LOCUS       DATIMD010000001         9692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1443866, whole genome shotgun sequence.
ACCESSION   DATIMD010000001 DATIMD010000000
VERSION     DATIMD010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9692
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1443866"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1325)
                     /locus_tag="VLI40_00005"
     CDS             complement(<1..1325)
                     /locus_tag="VLI40_00005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95575.1"
                     /translation="MSTFLRCPALAGLAGVAGLLLAGSNLQAQSRLSATAAGSAPPRP
                     VPAYAMPGPATVTVGASTPDSLAQLVLDRFATGTPAAFDSIYPDPFGRMVVASASGGK
                     TTREAGLHRVLYADGNRAVLLLTGTVQSGTGTGLGAGSDETNRVRRFSGLYEAVQSNG
                     VWMLTHQIPLDTANYIHTQTLHVALTPGKESRIVDTLSLTVGSPYGFAARINNATQIQ
                     ELRLDGRPVKYALGGGVLWIKAPARPRSQLVMKYTIAEDRDTASAKAKPAARDTTPAY
                     AAMNNTDAWHPFFNYDSGHDFGQLTVTATVPAEYRLSTTIPQTETVANGVRTVHGTSM
                     HPQFLLALVYDRDWKPVTSKIGNLTFETFLSPDYHFQHDTLASVVGRVYRVLVPRFGE
                     PQLPSHYLAVVEERALGHGGFAVRMNNAVISGDRATLMDESVIGPSYPFA"
     gene            1628..2314
                     /locus_tag="VLI40_00010"
     CDS             1628..2314
                     /locus_tag="VLI40_00010"
                     /inference="COORDINATES: protein motif:HMM:TIGR02985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-70 factor"
                     /protein_id="HSU95576.1"
                     /translation="MSPALNDGEVVLFAPLTPSGIPAMLPPVVSAAMPACTSAPLATS
                     ASASSVTRDADWLARIQRGDPVAHETLFRVYAPGLYAFLSRYVRSSAIAEDLVQDLFL
                     AIWAHRESLHIDGSIRTYLFTAARNRALNHLKHEKIADRFRVAMLDRVDASDPSAPGE
                     SDFLAAMEVQTAIDRLPPRCRLIFTMSRQQDMTYNQIACELGISVKTVEVQMGRALKS
                     LRAHHRESIA"
     gene            2483..2860
                     /locus_tag="VLI40_00015"
     CDS             2483..2860
                     /locus_tag="VLI40_00015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95577.1"
                     /translation="MTNDSEGSTKGSTEIDWNLIARYLANELSAEDRQKFERWVAEDD
                     QRLKEMAQLQLLWDHAGSLPSSSRMREIWNAVSREMEAGTGGTGGANAPPQNDENAGD
                     GSAGAGSAGDGSAGSRCNYQERK"
     gene            2864..5914
                     /locus_tag="VLI40_00020"
     CDS             2864..5914
                     /locus_tag="VLI40_00020"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSU95578.1"
                     /translation="MGIRVVFASMLFAGGAMLGTPLLAQQAGGTITGRVTEARSGAPL
                     TSATVTVQGTELGATTNQDGTYRIARVPAGSHTVVVRRIGYAPGTQAVTVSEGGAATA
                     DFALQVSAINLQQVVVTGTAGNQTRVAQGAVVATVDVSDVTAKAPVASVTDILSGRVA
                     GVSIASASGTVGASPRINIRGATSISLSNAPLVFVDGVRVSSGERNDLGQYHNLEGLG
                     GQSVTALNDINPDDIASIEVVKGPAASTLYGADASAGVIQIITKKGSLGAKRFAQSLT
                     TEWDQIQPNFTPRSVYGTCTARRVAPGGAALCQGKAVGDAVSINPLVRDDVFKNGSLA
                     SLEYNAQGGGDSFGYFVSGSANNETGTEPNNYYLRRTGRTSFNWVTNPKLSFDATVGL
                     SRNDYKVPQGDDANYGYLTQQYAFGNVFGVTVGPDGKQTGGLGTPVEGLSAISNELTT
                     VRYTPSAQVHYNPFNWLTNRLTVGADIASTQGSTFFPKNDQNWYNGDQANGYVENVQN
                     PVHIYTVDYLGDIRTKFHSDQISSDLSFGSQYINSTTNYLAGVGLGLATNSSNLVSSA
                     STTEGYQNYSQAKSLGFLAQEQLGFGETLFLQAGARVDRNSAFGKAYGSILLPKVSAS
                     YVISNSSFWTHLAPVVSTMRLRAAFGSTGRSPTPGASLRTYAPFTYITPSGAVGPGVV
                     QASPGNSNLKPERGTEFEGGFDAGFFHERAGIELTYYDKRTSDLLLQNPLPPSLAYQT
                     NPFINAGKVDNRGIEFTVHATPVSRKNLTWDATLTGSTLSNKLVSLGSIVIPPVSEIS
                     SDLTSRYVIGKPLGAWYSSRVLSVDTVGGFATITNTPQYVAPQLPKFQGNFSSTFTLF
                     HNLQLYGLLTSQSGGKLLNVTPLYLDLTQVSKGLNLPASKGGYTTAERLARCGPFKMQ
                     DGKPGPGLVLDSYLQPTDYVRLQELSATLTLPEAFARSFHTTNASLTVGGRNLHLWKS
                     KEFDGPDPEVASNTTVGGARQFESIEEFTVPPSRRWLVRLNLQF"
     gene            5925..7184
                     /locus_tag="VLI40_00025"
     CDS             5925..7184
                     /locus_tag="VLI40_00025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95579.1"
                     /translation="MTNILRSMRKPIFTSALVSVMVVGLAGCNMDVVNPSVIDASKFN
                     PNADGQTLSLSAQTNFFMAFQSVALYGGFVSEELWSGQTRFQQRNLAARTFAASDDIN
                     SSFFAPLSLAIASNENAVAALASGAGAASDVNLARSSMNLGFSLELMAETMCAGVIQG
                     GPSLTDAQLLDTAVARFTTAVTVATAAGSAGAAIVNQSNVGLARAYLQQGNYAKAAAT
                     AALVPSSFVTNVVTSSNVSTQGTLGNQIYGLTVLNDVIVPKRYRIGDPRMQSDSTVPG
                     KTQNGVALVIQSKFKGYADPIRLASGLEAQYISAEAALHGSNNTAPAISLINARRSAG
                     AQGPYAGGSDSTSVIAELLNQSARDFWMEGKKLGDLRRNPSVSLPAVLTDPAGAPFYA
                     SPPAQFGSNFCAPIPPQETNTNPNFTS"
     gene            7271..8020
                     /locus_tag="VLI40_00030"
     CDS             7271..8020
                     /locus_tag="VLI40_00030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95580.1"
                     /translation="MSDKSSPLSRFLGFRSYVATAATIAVGVSLLAFTKANQKPHFQE
                     IDAERINIVEPDGTLRMVISGRDRSQGPMFKGKPFGYPGGTRAGIIFFNDEGTEDGGL
                     TWNGKTVNGKHSAGAQLSFDQYNQDQIVTLQYADENGVRQQGLRIEDRANIPINELVD
                     RMTAIRKMPNGPARDSAMNKLVENNGDPIAAQRVFVGRDRSKTAVVNLSDALGKPWLR
                     LMVDSAGAAKIEFLDTKGKVTRTIAGDDGGK"
     gene            8035..>9692
                     /locus_tag="VLI40_00035"
     CDS             8035..>9692
                     /locus_tag="VLI40_00035"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSU95581.1"
                     /translation="MRLFRSSCSLQFVMLLCASVVTAQQQQPPVPQPSVQLTRAEALA
                     DTRAFLQMLQATHPDPYSNLGGKIAFERRAQRMMKDLPTNGLTVSDLAARLGMFVAPL
                     HDGHTNVTMYNAMWKSRKDPLPVQFQITADTFFVAASDLPALRGTRGYKVLGVDGHLM
                     TDLLERLSNHIGTENTYGLERTMANVLQKEDLIKLLVPSLAAATGVTYNLESPDGQRV
                     DRTVAFNNGAHSADPSKWAEKPVLWSGVDRPEDLFYYRMLDSGHTAYFRVSTMGGREA
                     VQTYRHINLGGPETLHEILVEYYQVLGRPLPANVDSAIAGIPSILEIGTRMLREMKKS
                     GARNLIIDVRGNGGGMTGVLYPLLYQIYGDGYFKQQLPDSSVTVMSKLYMKFFDVDST
                     KEAAKNPDFQVGWYQFGDSDEQPDSATGTPGSAEWAKSRRNRSLTQWKERGYSPSEMK
                     GLDALDGKPLYKPRHVAVLVDPVTFSAGFQIEFMLRQLGAALIGVPSGQSPNAFMQVT
                     PFTLPESHLTGSISNSTQEFLPDTPDVRVLKMDFPATYAVFRSYG"
BASE COUNT         1990 a         2804 c         2989 g         1909 t
ORIGIN      
        1 gcgaacggat atgacgggcc gattacggat tcatccatca gcgtcgcgcg gtcgccggag
       61 atcactgcgt tgttcatacg caccgcgaac ccgccgtgtc caagcgcgcg ctcctcgacc
      121 acggccagat agtgcgaggg aagctgcggc tcaccgaagc gcgggacgag tacgcgatac
      181 actctgccga cgacgctggc gagagtgtcg tgctggaaat gatagtccgg actcaggaaa
      241 gtctcgaagg tgagatttcc gatcttcgac gttacaggct tccaatccct gtcgtacacc
      301 agcgcgagca gaaactgcgg atgcatgctg gtgccgtgca ccgttcgcac gccgttggcg
      361 acagtctcgg tttgcggaat cgttgttgac aaccggtatt ccgcgggcac ggtcgccgtt
      421 accgtgagct gaccgaagtc gtggccgctg tcatagttga agaacggatg ccatgcgtcg
      481 gtgttgttca tcgctgcgta tgcgggcgtg gtatcccgcg cggctggctt tgctttcgcg
      541 ctcgccgtat cgcgatcttc ggcgatcgtg tacttcatta cgagttggga gcgcggacga
      601 gctggcgcct tgatccatag cacgccaccg ccgagtgcgt atttgactgg acgaccgtcg
      661 aggcgcagct cctggatctg cgtcgcgttg ttgatgcgtg cggcgaagcc gtatggactg
      721 ccgacggtga gcgaaagtgt gtcgacgatc cggctttcct tgccgggcgt gagggccaca
      781 tgcagagtct gggtgtggat gtagttggcc gtgtcgagcg ggatctgatg cgtgagcatc
      841 cagacgccgt tggactggac cgcttcgtac agtcccgaga agcggcgcac gcggtttgtt
      901 tcatcgctgc ccgctccgag gccggtgccg gtgccggatt gcaccgttcc cgtgagaaga
      961 aggacggcgc ggttaccgtc ggcgtacagg acccggtgca aacctgcctc gcgtgtcgtt
     1021 tttccacccg aggccgatgc cacgaccatg cggccgaagg gatcggggta gatgctgtcg
     1081 aatgccgccg gcgttccggt ggcgaatcgg tcaaggacca gttgtgcgag cgaatccggc
     1141 gtggatgcgc cgaccgtcac ggttgccggt cccggcatgg cgtaggctgg aacgggccgc
     1201 ggcggggccg atcctgcggc ggtcgccgag agccgcgatt gggcttgcag gttcgatccg
     1261 gccagcagaa ggccagcgac tccggccagt ccggccaggg ccgggcaccg cagaaatgtc
     1321 gacatccatg actccacttc ttccatgtat agaagaagaa aaaggtgccc gggctgcttt
     1381 acgtccttcc gccagcccga aaattactat accatttgtc cggactaata gtaatttgta
     1441 cgtaccaata gcgggataaa tatggcttgc cggcgctcga gtcgtagccg ggaaggcatg
     1501 gagtcccagc aggaagtcac ctctccaggc ggatctccat gagctttttg gaatcaacgt
     1561 cccaccgata cgcgtttggg ttcgcgtatt tccgcggcta tgtcgcggaa aaccgggcga
     1621 cggccagatg agtccagcgc tcaatgatgg agaggtggtt ctgtttgcgc cactgacgcc
     1681 gtcggggatt ccagcgatgc ttccgcccgt agtgagcgct gcaatgcctg catgcacatc
     1741 tgcaccgctg gcaacttccg catctgcgtc gtcagttacg cgcgatgcgg attggctggc
     1801 caggatacag cgtggcgatc cggtggcgca tgaaacgctg ttccgcgtgt acgcacctgg
     1861 cctgtacgct ttcctctccc ggtatgtgcg aagctccgcg atcgcggagg atctggtcca
     1921 ggatctcttt ctggccatct gggcccaccg tgagagcctg cacatcgatg gatccatccg
     1981 gacgtatctc ttcaccgctg cgcgaaaccg cgctctcaat catctgaagc acgagaagat
     2041 cgcggaccgc ttccgggtcg cgatgctgga ccgggtcgac gcatccgatc cttccgcccc
     2101 gggcgaatcc gactttctgg cggcgatgga agtgcagacc gcgatcgatc ggctcccgcc
     2161 gcgttgccgt ctcatcttca cgatgagtcg ccaacaggac atgacttaca atcagatcgc
     2221 gtgcgagctg ggcatctcgg tcaagacggt cgaggttcag atggggcggg ctctcaagag
     2281 tctgcgtgca caccaccgcg aatcgattgc gtgatgtgtg aatcagtcgg accgacgcct
     2341 gggggacgga aaatccagct ccagctgaat tgtttggacg catgtacggg tacgcgcagt
     2401 tctgaactgt ctcttagctc acagcaacac gtcttcagcc actggctacg acgcatccgg
     2461 atctgttgtg acgctccccg acttgacgaa cgactcagag ggttccacca agggttccac
     2521 cgagatcgac tggaacctga tagcgcggta cctggcgaac gagctctctg ccgaggatcg
     2581 gcagaagttc gagcgctggg ttgccgaaga cgaccaacgg ctgaaagaga tggcgcagct
     2641 tcagctgttg tgggaccacg cgggatcact cccgtcttca tcacgcatgc gtgaaatatg
     2701 gaatgcagtg tcgcgtgaaa tggaagcagg tacaggcggt acaggcggtg caaacgcgcc
     2761 gccgcagaac gacgagaatg ctggtgacgg gagtgctggt gccgggagtg ctggtgacgg
     2821 gagtgctggt tcacgatgca actaccaaga gaggaaatga acgatgggta ttcgtgtagt
     2881 gttcgcatca atgttgttcg cgggcggcgc gatgctcggg acgccgctgc tggcgcagca
     2941 agctggcggg acgatcaccg ggcgcgtgac tgaagcgcga tccggcgcgc cgctaacgtc
     3001 ggcgacggtg acagtacagg gtacggagct tggcgcgacg acgaaccagg acggtacgta
     3061 tcggatagct cgtgttccgg ccggcagcca tacggtcgtc gtccggcgca tcggttacgc
     3121 gccaggtact caggcggtaa cggtgtcgga aggcggcgcc gctactgcgg atttcgcgtt
     3181 acaggtatcc gcgatcaacc tgcaacaggt ggtcgtaacg ggtacggccg gtaaccagac
     3241 acgagtcgca cagggagcgg tcgttgccac tgtcgatgta tcggacgtga cggccaaggc
     3301 gcctgtcgct tccgtcaccg acattctgtc cgggcgcgta gcgggggtga gcatcgcgag
     3361 cgcatcggga accgtcggag cgtcgccccg gatcaacatt cgtggtgcga catcgatttc
     3421 gctttccaac gctccgctcg tctttgtcga cggtgtgcgc gtctccagcg gtgaacgcaa
     3481 tgacctcggt caataccaca atctcgaagg gctcggcggt caatcggtta ccgcactgaa
     3541 cgacatcaat ccggacgata tcgcgagcat cgaagtggtg aagggaccgg ctgcctccac
     3601 gctttacggc gcggatgcgt ctgcaggtgt gatccagatc atcaccaaga agggcagcct
     3661 cggcgcgaag cgttttgctc agagtctcac gacggaatgg gatcagatcc agccgaactt
     3721 cactccccgg tcggtatacg gcacgtgcac cgctcgccga gtggcgccgg gcggtgccgc
     3781 tctgtgccag ggcaaagcgg ttggagatgc cgtttcgata aatccgttgg tccgcgacga
     3841 cgtcttcaag aatggcagtc tggcatcact ggagtacaac gcacagggtg gcggcgacag
     3901 cttcggctac ttcgtctcgg gtagtgccaa caacgagaca ggtacggagc ccaacaatta
     3961 ctaccttcgc cgcaccgggc gcacgagctt caactgggtg accaatccga aattgagctt
     4021 tgatgctact gtcggtttga gtcgcaacga ctacaaggtg ccgcagggtg acgacgcgaa
     4081 ttacggatat ctcactcagc aatacgcctt cggaaacgtc ttcggcgtga ccgtgggacc
     4141 ggatggaaag cagaccggag gacttggcac acccgtcgag gggctttccg cgatcagcaa
     4201 cgagctgacc actgtgcgct acacgccgtc ggctcaggtg cactacaatc cgttcaactg
     4261 gctgaccaat agactgaccg tgggtgccga cattgcctcc actcaaggat ccacgttctt
     4321 ccccaagaac gatcagaact ggtataacgg cgatcaggcg aacggttacg tcgagaacgt
     4381 gcagaacccg gttcacatct acaccgtgga ctatctcggt gacatccgga ccaagttcca
     4441 cagcgatcag atatcgtccg atctctcgtt cggcagtcag tatatcaatt cgactaccaa
     4501 ctatctcgcc ggtgtcggat tgggactggc cacgaactcg tccaacctgg tgtcgtcggc
     4561 atcgaccact gaaggttacc agaattacag tcaggcgaaa tcactgggct tcctggctca
     4621 ggagcaattg ggtttcgggg agaccctgtt cctgcaggcg ggcgctcgtg tagatcgtaa
     4681 ttcggcgttc ggaaaggcat acggctcgat cctcctgccg aaggtgagcg cttcgtacgt
     4741 gatttccaac tcatcattct ggacacatct cgcgccggtc gtttctacga tgcgactgcg
     4801 cgctgctttt ggtagcaccg gccggtcacc aacgccgggt gcgtcgctgc gtacgtatgc
     4861 gccgttcaca tacattactc catcgggcgc ggtcgggccg ggcgtggtac aggccagtcc
     4921 ggggaactcc aatctcaagc cggagcgcgg caccgagttc gaaggtggct tcgacgccgg
     4981 gttcttccat gagcgtgcgg gaatcgagct cacgtattac gacaagcgta cctccgatct
     5041 gctactgcag aatccactgc caccgtcact ggcgtaccag accaacccgt tcatcaacgc
     5101 cggcaaggtg gacaaccgcg gaatcgagtt cacggttcat gcgacgcctg tatcacggaa
     5161 gaatctgacc tgggacgcaa cgctcactgg cagcactctg agcaacaaac tggtcagcct
     5221 gggctcgatc gtcataccgc ccgtcagtga gatcagctcc gatctgacgt cgcgctacgt
     5281 gatcggaaaa ccgctcggcg cgtggtattc cagcagggtg ctgagtgtag acaccgtggg
     5341 cggattcgcg acaatcacca atacaccgca gtacgttgct ccacagcttc ccaagttcca
     5401 ggggaacttc agcagcacct tcacgctgtt tcacaacctg cagctgtatg ggttgctcac
     5461 ttcgcagagt ggcggcaagc ttctcaacgt tacgccgctc tatctggact tgacccaagt
     5521 gagcaaggga ctgaacctgc cggcgagcaa gggcggttac acgacagcgg agcggcttgc
     5581 gcgatgcggc ccgttcaaga tgcaggatgg gaagccgggc ccgggtctcg tgctggattc
     5641 gtatctgcaa cctaccgact acgttcgcct gcaggagctg tctgcaacgc tgacgttgcc
     5701 ggaagcattt gccagaagct ttcacactac gaatgcgtcg ctcacggtgg gtgggcgtaa
     5761 cctgcatctc tggaagagca aggaattcga tgggccagat cctgaagtgg cttcgaacac
     5821 cacggtggga ggggcgaggc aattcgaaag catcgaggaa ttcacggtgc cgccatcgcg
     5881 tcgctggctc gtcagactca accttcagtt ctgaggaatc caccatgacc aatattcttc
     5941 gatcaatgcg gaagccgatc ttcacgagcg cgctcgtgag cgtgatggta gttgggctgg
     6001 ctgggtgtaa catggatgtc gtgaacccat cggtaatcga cgccagcaag ttcaatccta
     6061 acgctgacgg ccagacgttg tccctctcgg cgcagacgaa tttcttcatg gcgttccaga
     6121 gtgtcgcgct gtacggcggc ttcgtttcag aagagctgtg gagtggtcag actcgattcc
     6181 agcagagaaa cctcgcggct cgcaccttcg ctgcatcgga cgacatcaat tcgagtttct
     6241 ttgcgccact gagcctggcc atcgcgtcga atgaaaacgc ggtagctgcg ctggcatcgg
     6301 gggcgggggc ggcatctgat gtgaacctcg ctcgctcgtc catgaatctc gggttctcgc
     6361 tcgagctcat ggctgaaaca atgtgcgctg gcgtcattca gggcggacca tcactcaccg
     6421 atgcgcagtt gcttgacacc gctgtcgcca gattcactac ggcggttacg gtcgcaaccg
     6481 cggccggatc agctggcgca gccatagtca accaatccaa cgtcggactc gctcgggcct
     6541 acctgcagca gggtaattat gcgaaggccg ctgctactgc cgctcttgtg ccgagttcct
     6601 tcgttacgaa cgtagtgacg agctcgaacg tcagtacgca ggggacgctt ggaaatcaga
     6661 tatacggatt gacggtcctc aacgacgtta tcgtgccgaa acgctacagg atcggcgatc
     6721 cgcgcatgca gagcgacagt acggtgcccg gcaaaacgca gaatggtgtg gcgctggtca
     6781 tccagagcaa gttcaagggt tacgccgatc caatccgtct ggcgtcggga ctcgaagctc
     6841 agtacatctc ggccgaagca gcgctgcacg ggagtaacaa cacagctccg gcgatttctc
     6901 tgatcaatgc gcggcgcagt gcaggtgcac aggggccata cgccggtggg agcgacagta
     6961 cttccgtgat tgcggagctc ctgaatcaga gcgcacgcga tttctggatg gagggaaaga
     7021 agctgggcga tctgcggcgt aacccgtcgg tctcactgcc ggcggttctg accgatcccg
     7081 ctggagcgcc gttctacgcc agtccgccgg cgcagttcgg aagcaacttc tgtgcgccga
     7141 ttccaccgca agagaccaat accaatccga atttcacgtc gtaacctgat cgtcaaatgc
     7201 ggcggaccct ccggggtccg ccgcattgtc acatcacacc tcgaatccac cgaattcacc
     7261 aggaacaatc atgtccgata agtcttcgcc cctgtcgcgc ttccttggat tcaggagtta
     7321 cgtcgccaca gcggcaacga tcgcggtggg agtatcgctt cttgcattca ccaaggcgaa
     7381 tcagaagccg catttccagg agatcgacgc cgagcgaatc aacatcgtgg agccggatgg
     7441 tacgctccgc atggtgatct cgggcaggga ccggtcgcag ggaccgatgt tcaagggaaa
     7501 gccattcgga taccctggtg gaacgcgcgc cgggatcatc ttcttcaatg atgaaggaac
     7561 cgaagacggt ggtctcacat ggaacgggaa gaccgtgaat ggcaagcaca gcgcgggcgc
     7621 tcagctctcg ttcgatcagt acaaccagga tcagatcgtg acgctgcagt atgccgacga
     7681 gaatggtgtt cgccagcagg gactgcggat cgaggatcgc gcgaacattc ccatcaatga
     7741 gctggtcgac agaatgaccg cgatacgcaa gatgccgaac ggacctgcca gggactccgc
     7801 gatgaataag ctcgtcgaga acaacggtga tcccatcgca gcgcagcgtg tgtttgtcgg
     7861 acgcgaccgg agcaagacgg ctgtggtcaa cctctccgac gcgctcggca agccgtggct
     7921 cagactcatg gtggactctg ccggcgcggc gaagatcgag tttctcgata ccaaggggaa
     7981 agttacgcgc accatagccg gcgacgacgg cggtaaatag gagaaaatcc ggcgatgcga
     8041 ctttttcgat cgtcctgcag cctgcagttt gtcatgctgc tctgcgcatc cgtcgtgacc
     8101 gcgcagcaac agcaaccacc tgtgccgcaa ccatccgtgc agctcactcg cgccgaggcg
     8161 cttgctgaca cgcgggcgtt ccttcagatg ctgcaggcta cgcaccccga cccgtacagc
     8221 aatctcggcg gcaagatcgc attcgagcga cgggctcaac gcatgatgaa ggatcttccg
     8281 acaaacggac tgacggtcag cgatcttgcc gcgcgattgg ggatgttcgt cgcgccgttg
     8341 catgacggtc acaccaatgt gaccatgtac aacgcgatgt ggaagagcag gaaggatcca
     8401 ctgccggtgc agttccagat cactgccgac acgttcttcg tggcagcgtc ggatttgcca
     8461 gcgctgcgtg gtactcgggg ctacaaggtg ttgggcgtcg acggccacct catgacggac
     8521 ctgctcgagc gtctgtcgaa tcacatcggc accgaaaaca cgtacggcct cgagcggacc
     8581 atggccaacg tgcttcagaa ggaagatctc atcaagcttc tggtcccgag tctcgccgcg
     8641 gcgaccggtg tgacgtacaa tctggaatcc ccggacggac agcgtgtgga cagaaccgtc
     8701 gcattcaaca acggcgcgca cagcgcggat ccgagcaaat gggcggagaa gccagtgctg
     8761 tggtccggtg tggatcgacc cgaggatctg ttctattacc gcatgctcga tagcggacac
     8821 acagcgtatt tccgcgtcag tacgatgggc gggcgcgaag cggtgcagac gtatcgtcac
     8881 atcaacctcg gcggccccga gacgctgcac gagatactgg ttgagtatta ccaggtgctt
     8941 gggcgaccgc ttccggccaa tgtggacagt gccatagccg gaattccgtc gatcctcgag
     9001 atcggcacga ggatgcttcg tgagatgaag aaatccggcg cgcggaatct catcatcgat
     9061 gttcgtggca atggtggcgg aatgacgggg gttctgtatc cgctgttgta ccagatatac
     9121 ggcgacggct acttcaagca gcagcttccg gacagctcgg ttaccgtgat gtcgaagctg
     9181 tacatgaaat tcttcgacgt cgactccacg aaggaagccg caaagaatcc ggatttccag
     9241 gtgggatggt accagttcgg tgactctgac gagcagccgg actctgcgac cggaacgcct
     9301 ggcagtgcgg agtgggcaaa gtcgcgccgg aacaggagtc tcacacagtg gaaggagcgc
     9361 ggctattcgc catcggagat gaagggtctc gacgcgcttg acggcaagcc attgtacaag
     9421 ccgcggcacg tcgccgtact cgtcgaccca gtgacattca gcgccggatt ccagatcgag
     9481 ttcatgcttc gccaactggg cgctgcgctg atcggtgtgc catcgggaca gtctccgaac
     9541 gcattcatgc aggtcacacc attcacgcta ccggaatcgc atctgacggg cagcatctcg
     9601 aactcgactc aggaatttct accggacacg cctgatgttc gtgtgctgaa aatggatttc
     9661 ccggcgacgt atgcggtgtt caggagctac gg
//
LOCUS       DATIMD010000002         2889 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1445006, whole genome shotgun sequence.
ACCESSION   DATIMD010000002 DATIMD010000000
VERSION     DATIMD010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2889
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1445006"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1087)
                     /locus_tag="VLI40_00040"
     CDS             complement(<1..1087)
                     /locus_tag="VLI40_00040"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HSU95582.1"
                     /translation="MCDLNVESHMPMIMWVLAFVLGGLTAGYSLPWQISLGACGALAW
                     LAATDFVPAACVLYFAAACAIAGAGPRPRTGPGFAVKADSAALGEKLRLRASRAIDSA
                     FALDAPIARALLVADQSEIPRDVKRAYADAGIVHMLAISGLHVSIVAASLLLVLGIAR
                     VPGRIGSFITAVTIMGYVFMLGFPAPALRSAVMVCIATASHACQRHSSRWSILALGGI
                     VPLVKPETVLDVGYQLSMAGMAAVIAAGAVARRGRIATLAGWRRGVAQSLIVSGVATL
                     VTAPLVGCWFGRLSLVAPLTNLVADPVIAVVQPMLFLALVLAPWPAAARFVALAAHPL
                     LVSFEAIARFAASLPYAAVAVTISSLGV"
     gene            complement(1142..2470)
                     /gene="miaB"
                     /locus_tag="VLI40_00045"
     CDS             complement(1142..2470)
                     /gene="miaB"
                     /locus_tag="VLI40_00045"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HSU95583.1"
                     /translation="MTRPTVYIETYGCQMNVSDTELMLGKLAASGYDAVDSPDGADVI
                     LVNTCAIRDHAEQRVIGRLGELKRHMSPTAVMGVTGCMAQRLGPTLLERTPHVSIVIG
                     PDGYRALPTLIENARNGVRASATDFDMEEHYEDFKPRRFDKVKAWIPVQRGCDYRCTY
                     CIVPYTRGPERSRALADVVRETEAVVADGMSEVVLLGQTVNSYTDGTYDFADLLRAVG
                     NVDGVRRLRFTSPHPNDFSDRVIEAIATTPAVCEHVHLPMQSGSSRTLKRMLRRYTRE
                     SYFECAERLRAAVPGLALTTDIIVGFPGESDDEFAETLSAVREVGFDDAYTFKFSMRD
                     GTPATRLPAELAISDEVASDRLGQLIAVVREGSRARNMAKLGERREVLIEKEARRGGL
                     LQARTRDFKTVIVPGGPEMIGEYVDVELTGTTGSTFTGVVVRSREPLPMR"
     gene            complement(2475..>2889)
                     /locus_tag="VLI40_00050"
     CDS             complement(2475..>2889)
                     /locus_tag="VLI40_00050"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU95584.1"
                     /translation="TQEGASVVTSVSEDAATFEADKPLLKRVFSNILQNALTHSGRAI
                     ELRITARGEEDGVLFGIQDNGPGIPEEFHDLIFQKFGRVKAGHVPRVRSSGLGLAFCK
                     LVVEAHGGRIWVRSVTGEGSTFYVQLPTHPPKEPR"
BASE COUNT          557 a          954 c          889 g          489 t
ORIGIN      
        1 gcacgccaag ggatgaaatc gtcaccgcta ccgcggcata cggcagcgat gccgcgaacc
       61 gtgcgatcgc ctcgaagctt acgagcagcg ggtgcgccgc cagagcgacg aagcgcgccg
      121 cggcaggcca gggcgccagc accagtgcaa gaaagagcat gggctgcaca acagcaataa
      181 ccgggtcagc aacgaggttg gtgagcggtg ccaccaggct cagacgtccg aaccagcatc
      241 caacgagggg agcggtaacg agcgttgcca cgccggatac gatcagtgat tgagccactc
      301 cgcggcgcca gccggcaaga gttgcgattc ggccgcgcct ggccacggcg cccgctgcaa
      361 tgacagctgc catccccgcc atgctgagct ggtagccgac atccagtacc gtctcaggct
      421 tcacaagcgg aacgataccg cccagcgcga gaatactcca tcgtgatgaa tgccgctggc
      481 acgcgtgcga cgcggttgcg atgcacacca ttaccgccga gcgcaatgcg ggtgcgggaa
      541 accccagcat gaacacgtag cccattatcg tgaccgcggt gatgaacgaa ccgattcggc
      601 ccggcactcg cgcaattccg agcaccagca gcagcgacgc cgccacgatc gacacgtgca
      661 gtcccgagat cgcgagcatg tgaacgattc cggcatcggc gtacgcacgc ttgacgtcgc
      721 ggggaatctc gctctggtcc gcgacaagca atgccctggc gatcggtgca tccagagcga
      781 acgcggaatc gatcgcgcgg ctcgcgcgaa gtcgcaattt ttcgccgagt gcggcagagt
      841 ccgccttcac tgcgaacccg ggacctgtgc gcggcctggg gccggcgcca gcaatcgcgc
      901 acgctgcggc gaagtacaat acgcacgccg cggggacaaa atctgtcgcg gcgagccatg
      961 ctagcgcacc gcacgcgccg agcgagatct gccacgggag cgaatagccc gccgtgaggc
     1021 cgcccagcac gaacgcgagc acccacatta tcatcggcat gtgcgactcg acgttgagat
     1081 cgcacattgt acatccagaa tcggatgcgc gcggtagcat ccgcgcgcac gtcgcggcga
     1141 attaccgcat cgggagcggt tcgcgtgaac gcactaccac gccggtgaac gtcgagccgg
     1201 tggtcccggt cagctccaca tcgacgtact cgccgatcat ctccggtccg ccgggaacga
     1261 tgactgtctt gaagtcgcgc gtccgcgcct ggagcaagcc gccgcgccgt gcctccttct
     1321 cgatcagcac ctcgcgccgc tcaccaagtt tcgccatgtt gcgcgcgcga gatccttcgc
     1381 ggaccaccgc gatcagctgt ccgagcctgt cgctcgccac ttcgtcggag atcgccaatt
     1441 cggccggaag ccgcgtagcc ggagtaccgt cccgcatcga gaacttgaac gtgtatgcgt
     1501 cgtcgaagcc gacctcacgc actgcactca gggtctccgc gaactcatca tcgctctcgc
     1561 ccggaaagcc gacgatgatg tcggtcgtca atgcaaggcc gggaaccgcc gcgcgcaatc
     1621 tctccgcgca ttcgaagtac gattcgcgcg tgtaccgtcg cagcatgcgc ttgagcgtgc
     1681 gcgacgatcc cgactgcatc ggaagatgca cgtgctcaca caccgcgggt gtagttgcaa
     1741 tcgcctcgat aacgcgatca ctgaagtcgt tgggatgcgg gctcgtgaag cgaagacgac
     1801 gaactccatc gacgtttccg accgcacgga gcaggtcggc gaaatcgtac gtgccgtcgg
     1861 tgtacgaatt gacggtttgt ccaagcagca cgacctccga cattccatca gcgacgaccg
     1921 cctcggtctc gcgcacgacg tctgcaagcg cgcggctgcg ttccggcccg cgcgtgtaag
     1981 gcacgatgca atacgtgcag cggtaatcac aaccgcgctg cacgggaatc caggccttca
     2041 ccttgtcgaa ccggcgcggc ttgaaatcct cgtaatgctc ctccatgtcg aaatcggtcg
     2101 ccgatgccct gactccgttg cgcgcgttct cgatcagcgt cggcagcgcg cgatacccgt
     2161 ccggtccgat gacgatgctc acgtgcggcg tgcgctcgag aagtgtcggc ccgagccgtt
     2221 gggccatgca tccggtgaca cccatgaccg ccgtcggtga catgtgccgc ttgagctcgc
     2281 ccagacgtcc aatcacccgc tgctcagcgt gatcccgaat ggcgcatgtg ttgacgagaa
     2341 tgacgtcggc gccgtcggga ctgtcgaccg cgtcgtaacc cgaggccgcg agcttgccga
     2401 gcatcagctc ggtatcgctc acgttcatct ggcagccgta ggtctcgatg taaactgtgg
     2461 gtctggtcat gctcttaccg tggttccttt ggtgggtgcg tcggcagctg aacgtagaac
     2521 gtgcttccct cgcctgtcac gctgcgcacc cagatacgtc cgccgtgtgc ctcgactacg
     2581 agcttgcaga acgcgaggcc aagtccggag ctgcgaacgc gcggtacgtg gccggccttg
     2641 acgcggccga atttctggaa gatcaggtcg tgaaactctt ctggaatccc cgggccgttg
     2701 tcctgaattc cgaacagcac accatcttcc tcaccgcgcg cagtgattcg cagctcgatc
     2761 gcgcgcccgg aatgcgtcag cgcattctgg aggatgttgg agaacacgcg cttgaggagt
     2821 ggcttgtcgg cctcgaacgt tgcggcgtcc tcggagaccg acgttacgac ggaagcgccc
     2881 tcctgagtg
//
LOCUS       DATIMD010000003         2351 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1156342, whole genome shotgun sequence.
ACCESSION   DATIMD010000003 DATIMD010000000
VERSION     DATIMD010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2351
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1156342"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1123)
                     /locus_tag="VLI40_00055"
     CDS             complement(<1..1123)
                     /locus_tag="VLI40_00055"
                     /inference="COORDINATES: protein motif:HMM:NF024241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU95585.1"
                     /translation="MARSAALGRLTALIITAFVDMVGLLMIIPLMPYYARSFGASALM
                     VALLMSSFTAAQLLSAPFWGRVSDRYGRRPALLFGLGAAAIAYVVFAYATTIWLLLLS
                     RVVQGAGGGTTGVVQAYVADAVEPEERAKALGWISAATNVGVALGPPVGSFALKLFHV
                     HGPGLIAATLCLLNIAFAWRYLSESRDMVEAKHTQPKRGASFTAVKHVFTHTKEAAPR
                     LIWVYAIGIGAFQGITAILALFLDDKFGITADRIWVIFTFMGTVSVITRAGILGKAVD
                     RWGEVRLSRIGLIMLAAGLGAFPLMPTYITLYLAVTLIPLGTAFTFPCVTSMLSRVIS
                     RNERGLYMGVQQTFGGLARVIVPLFAGYTYDHLGHSIPFL"
     gene            complement(1475..>2351)
                     /locus_tag="VLI40_00060"
     CDS             complement(1475..>2351)
                     /locus_tag="VLI40_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU95586.1"
                     /translation="LQRWSDAMNTFAIVTQVLRIAVPYLFAAAGGVIAERSGIISLTL
                     EGYMLGGAFAAIVGTFYSGSPVVGALCGIGGGIVLALIHAVASIRYRADQVIVGIAIN
                     LFAIGITRFFLKLLFDSSSNSPRVTGFAPGYGDPLLWLGLLSTPVVAFILFRTTFGLR
                     VRATGEKPEAAASVGVSVHRVQYMAVLLSGALAALGGVYLALDQHQFTDQMTAGRGFI
                     AVAAVIFGRWSPLRAGAACLLFAAAETVQIHLQGNHVVASQFIEMIPYVLTIVALAGV
                     VGRAIAPAALGRAET"
BASE COUNT          506 a          729 c          733 g          383 t
ORIGIN      
        1 cgaggaacgg aattgaatga ccaagatggt cgtacgtgta accggcgaac agcggaacta
       61 tcacacgtgc aagtccaccg aatgtctgct gcacacccat gtaaagtccg cgctcatttc
      121 tgctgatgac gcgcgacagc atggacgtga cgcacggaaa cgtgaacgct gttccgagtg
      181 ggatcaacgt cacggcgaga tacagcgtga tgtaggtcgg catgagaggg aacgcgccga
      241 gtccggcggc gagcatgatg agaccgattc gcgacagcct cacctcgccc catcgatcaa
      301 cagccttgcc gagtattccg gcgcgcgtga tgaccgagac cgttcccatg aacgtgaaga
      361 tcacccagat gcgatcggcg gtgatcccga acttgtcatc gaggaagagc gccagaatcg
      421 cggtgattcc ctgaaatgcg ccgatgccga tggcgtacac ccagatgagc cgcggtgccg
      481 cttccttggt gtgcgtgaat acatgcttca ccgcggtgaa cgacgcgccg cgcttgggct
      541 gcgtgtgctt cgcctctacc atgtcgcgcg attccgacag gtagcgccac gcgaaagcga
      601 tattcagcag gcaaagcgtg gcagcgatca gtcctggtcc atgtacgtgg aacaacttga
      661 gcgcgaagga gccgaccggt gggccgagcg cgactccgac attcgtcgct gcggagatcc
      721 agccaagtgc cttggcgcgt tcctcaggct cgaccgcatc cgcgacatag gcctgcacca
      781 ctccagtcgt tccaccgccg gcgccctgca ccacgcgtga cagcagcagc agccatatgg
      841 tagttgcata ggcgaacacg acgtacgcga tcgccgccgc acccaatcca aagaggagcg
      901 caggccggcg tccgtagcga tccgaaaccc gtccccagaa cggcgcgctc agcagctgcg
      961 cggccgtgaa cgacgacatg agcagcgcga ccatgagcgc actcgcgccg aacgagcgcg
     1021 cgtagtacgg catgaggggg atgatcatga gcagccccac catgtcgacg aacgccgtga
     1081 tgatgagtgc cgtcaggcgt ccgagtgccg cgcttctggc cactagcgga tacgaggtgt
     1141 tgaagtgcgg caggccggga tcatgccggg agccggggtt gcgagctgat tggcgtgcag
     1201 ttgagcgatg tccctgcgct caccagggtt gaactgtgcc ggacgcatgg ggccggcgcc
     1261 gtgcagcgga ttttaaagtg acatcgcatc tggtgggaat ttagccgacg ggagggcggt
     1321 cggaatacgg gccgcccgga agcggtctcc catgcacaca aaggaatggc attgtaaact
     1381 ctcggcccac tgagacatcc gttcggggct tcctggctac cactcacggc atccgggccg
     1441 gcgcctccga cccgtagccg cgggatatcc gaggctacgt ctccgcccgt cccagcgccg
     1501 ccggcgcaat tgcgcgccct acgaccccgg ccagcgccac gatcgtcagc acgtaaggga
     1561 tcatctcaat aaactgggat gcgacgacat ggttgccctg gagatgtatc tgcaccgtct
     1621 ccgcagctgc gaacaacagg catgcggcac ccgcgcgcaa cgggctccat cttccaaata
     1681 tcaccgccgc gacggcgatg aatcctcggc ccgctgtcat ctggtcggtg aactgatgct
     1741 gatccagcgc gagatatacc ccgcccagcg cggccagtgc accagacagg agaactgcca
     1801 tgtactgaac tcgatgcacc gatacaccga cgctcgccgc ggcctccggt ttctcgccag
     1861 tcgctcgtac gcgcagtccg aacgtggtcc tgaacagaat gaaagcgacg acgggtgtag
     1921 agagcaatcc gagccagaga agcggatcgc cgtatccggg ggcgaatccc gtgacgcgcg
     1981 gtgaattgga agagctgtcg aacagaagct tgaggaagaa gcgcgtgatt ccgatcgcga
     2041 agagatttat cgcgattcct acgatcacct gatcggcccg atacctgatc gacgcgactg
     2101 cgtgaatcag tgcgagcaca atgccaccac cgataccgca aagcgcaccg acgactggac
     2161 tgccggaata gaacgtaccg acgatcgctg cgaatgcgcc gccgagcatg tagccttcca
     2221 gcgtgagcga gatgatgccg gaacgctcgg cgatcactcc gccggcggcg gcgaacagat
     2281 atggtaccgc gatgcggagg acctgcgtga cgattgcgaa cgtgttcatc gcgtcagacc
     2341 accgctgcag g
//
LOCUS       DATIMD010000004         6381 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4332720, whole genome shotgun sequence.
ACCESSION   DATIMD010000004 DATIMD010000000
VERSION     DATIMD010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6381
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4332720"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..663)
                     /locus_tag="VLI40_00065"
     CDS             complement(<1..663)
                     /locus_tag="VLI40_00065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_257790189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HSU95587.1"
                     /translation="MKNSDVLPALSSGEVLRYSRHLILDEVGMEGQRRIKNARVLLIG
                     AGGLGSPSALYLAAAGVGTLGLVDFDVVDASNLHRQILHGTSDVGRPKLDSARDRIAD
                     VNPHVHVEPFNTRLDAGNAIAIMQDFDIVVDGTDNFATRYLTNDAAALLGKPNAFGCI
                     FRFEGQASVFGAPNGPCYRCLFRDPPPAGLIPNCAEAGVLGVLPGLVGTIQAVETLKL
                     ILG"
     gene            complement(703..1692)
                     /gene="thrB"
                     /locus_tag="VLI40_00070"
     CDS             complement(703..1692)
                     /gene="thrB"
                     /locus_tag="VLI40_00070"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: protein motif:HMM:TIGR00191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HSU95588.1"
                     /translation="MTTRARESNVRELSVRELSVRVPASTSNLGSGFDAVGMAIDRWL
                     TVGARIHSNDSPVTVTREGTIARLTCAPAEDLIWRGFVAACTALGRTPPDGVEIFATS
                     DIPVARGLGSSAAAVVAGVLLANAVLGGDMDRAAIVDVAASLEGHPDNVAPSVLGGAV
                     LSVRTSAQHYRSAPITVHPSLRFVFVVPDFEVRTSVARAVLPATVPHDVAVNAAARGA
                     ALIVGLQTADAAILVPALDDLLHVPFRRALIRGYDAVTAAAVGAGAIGATLSGSGSAI
                     VAVVRRDAAAKVCDAVVSAWRSAGVNAEAFVTAAEPRGATIGDARLYKERLRT"
     gene            complement(1689..3347)
                     /locus_tag="VLI40_00075"
     CDS             complement(1689..3347)
                     /locus_tag="VLI40_00075"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: protein motif:HMM:NF006006.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HSU95589.1"
                     /translation="MTGSSSNDGVSSKLSRRAFVGVGIAGALAAATGASASPIVDTEL
                     THGETRPATFELDEVTISQLQAWMKSGRYTSQALCEMYLKRISEIDRTGPAIRSVLQL
                     NPDAIAIASALDAERKSGHVRGPMHGIPVLIKDNIGTHDRMTTAAGSLALAHSIPPRD
                     SFLAARLRAAGAVILGKTNLSEWANYRSTHSSSGWSGIGGQTHNPYALDRTPSGSSSG
                     SGAAAAASLCAIAVGTETDGSITSPSSVHSLVGLKPTVGLVSRSGIIPISHSQDTAGP
                     MARTVTDAAILLGALTGVDPADNATAPSAGHAHGDYTAFLDVNGLKGARIGIPRKRYF
                     GYSVATDAIVDEAIALMKSAGAIIIDPIEIGSSGDSEGDVLSYEFKADINAYLASLGP
                     SSPMKTLADLIAFNNAHRTEEMPYFGQEIFETAEARGPLTEKKYLDALASGHEHSRAQ
                     GIDAAVARYRLDAIAAPTQGPPGLIDLVKGDPRGGGSATGLPAVAGYPHITVPAGYSF
                     GLPVGLSFFGPAWSEPMLLKLAYAFEQKSKVRRAPRFLATAELT"
     gene            3332..3676
                     /locus_tag="VLI40_00080"
     CDS             3332..3676
                     /locus_tag="VLI40_00080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95590.1"
                     /translation="MMIQSLVGVEEAWARSSVQGTMDAFSDNTILPKLQGDAMADKDK
                     SGKVTQADSSKENRTDKVSGRSFGRGMTSPDSREAVLDASTGEVDPRAAGEGSLPPGE
                     SEPNRKNRKKNS"
     gene            complement(3827..4042)
                     /locus_tag="VLI40_00085"
     CDS             complement(3827..4042)
                     /locus_tag="VLI40_00085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95591.1"
                     /translation="MTPQHGGKMDKRQLEALVKKNAAKAASATSTRKGFGKKYDVNLA
                     DDPIDEASLKERERGEMFFKEMRKREF"
     gene            complement(4209..5381)
                     /locus_tag="VLI40_00090"
     CDS             complement(4209..5381)
                     /locus_tag="VLI40_00090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen-binding domain-containing protein"
                     /protein_id="HSU95592.1"
                     /translation="MRSCVHVAALLALHLLVALLAVAGAPLMLHAQSARQPAGHGVLF
                     DGDIASIKIDGYARASLTSLGSSLWGTNGRFSGIGTASLARFETGSTTGYGELHGSFA
                     LSSDRRNISAIRADAGAGAYRGETSSRYGEASLTLGRSSERGAVAGWLDAGVGRVDAV
                     SVRNTSHARLGASVQSASATLGGEIGTVASGSLRYSEAVMHAQLALLGSGPSGIPRLV
                     IGGDGGVRSADDLQGRHAWALGVATVRLGGPVSLIGYAGAQPPDPTRGTLGAAYASIG
                     LRIALGASGRDHAPAVISSTSRATSVSAAADDGRRMISVSLESARSVEIMGDFTGWLP
                     VTMVRSPTGKWQVRIPLEQGSHRAEVRADSGAWVPAPGLPVATDEFGGSVGILVVP"
     gene            complement(5429..6106)
                     /locus_tag="VLI40_00095"
     CDS             complement(5429..6106)
                     /locus_tag="VLI40_00095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95593.1"
                     /translation="MMKRFITIVAVIVAVVALAPGSSVANAQGTGALRQLDGRASASL
                     KAQVTAVADSIAHAGLPVAPLVDKTLEGISKGADDNRIMIAVRGVANDLGIARRALGP
                     SSDNELAAAVAALRAGSTPDGLTQLRKELPGRQLVVPLSVLASLIVDGAPAPSAIVAV
                     VANAKQQNDSGLLAYGRSVSHDIAGGVAPLTAITTMQMPAAAAPHALTAFTGKTVPLP
                     APPKPKP"
     gene            complement(6103..>6381)
                     /locus_tag="VLI40_00100"
     CDS             complement(6103..>6381)
                     /locus_tag="VLI40_00100"
                     /inference="COORDINATES: protein motif:HMM:NF027875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoamylase early set domain-containing protein"
                     /protein_id="HSU95594.1"
                     /translation="AVSNVRFTLVASGASAVAVAGSFNGWSTAATPLRRIDKNTWTAD
                     IPLGAGRYVYQFVIDGHRWVPDPKAPRDAGDDFGATNSVVTVAGSGSA"
BASE COUNT         1219 a         2047 c         1999 g         1116 t
ORIGIN      
        1 gccgaggatc agcttgagcg tctccaccgc ctgaatcgtt ccgacgagac ctggaagcac
       61 gccgagcaca cccgcttcag cacaattggg aatgagaccc gccggtggtg gatcgcggaa
      121 gagacagcga tagcacggcc cgttcggtgc gccaaagacg gacgcctgtc cctcgaagcg
      181 gaagatgcat ccgaacgcgt tgggcttgcc aagcagcgcc gcagcgtcgt tggtgagata
      241 acgcgtggcg aaattatcag ttccgtccac gacgatatcg aagtcctgca tgatcgcgat
      301 tgcattacca gcatcgagtc gtgtgttgaa cggctcgaca tgcacgtgtg gattcacatc
      361 tgcgatgcga tcgcgcgcag aatccagttt ggggcggccg acatcggatg tgccatgcag
      421 gatctgtcgg tgcaggttcg acgcgtcaac gacatcgaag tcgaccagtc cgagcgtgcc
      481 gacgccggcc gctgccagat acagcgcgct cggggaaccg agaccgccgg cgccgatcag
      541 caggacgcga gcattcttga tgcgccgctg gccttccatc ccgacctcat cgaggatgag
      601 atgacgcgaa tagcgtagga cctcgccaga gctgagcgcc ggaagtacgt cgctgttttt
      661 cattgccatg atgacagtgc gtcagtagtg attgtgtggt gatcaggtac gcaatcgctc
      721 tttgtacaat cgcgcgtcgc caattgttgc gccgcgcggc tccgccgcgg tcacgaacgc
      781 ttccgcattc acgccggcag atcgccaggc actcactacc gcatcgcaaa ccttcgccgc
      841 tgcatcgcga cgcacaacgg caacgatcgc cgagcccgac ccgctgagcg tcgcaccgat
      901 cgcacccgca ccgaccgcgg ccgcggtgac tgcatcgtat ccacggatca gcgcgcgtct
      961 gaacgggacg tgcagaagat cgtccagcgc cggcacgaga atggcagcgt cggccgtttg
     1021 aagcccgacg atcagggcag cgcctcgcgc ggcggcattg actgccacat cgtgaggaac
     1081 cgtggcggga agcaccgcgc gcgcaaccga cgtccgtact tcaaaatccg gcacgacaaa
     1141 cacgaagcgc agcgacggat gcacagtgat cggcgccgat cggtagtgct gcgcggacgt
     1201 acgcacgctg aggacggcgc cgccgagcac tgatggcgcg acgttgtccg gatgtccctc
     1261 cagcgatgcg gcgacgtcga cgatagcggc acgatccatg tcgccgccca gaactgcatt
     1321 cgcgagcaac acaccagcta ccaccgctgc ggcggaagat cccagtccgc gcgcgacggg
     1381 aatgtcggag gttgcgaata tctcgactcc atcgggcggt gtgcggccaa gcgcagtgca
     1441 tgccgcgacg aagccacgcc agatgagatc ttccgccggt gcgcacgtca accgcgcaat
     1501 ggtgccttca cgcgtgacgg tgacaggtga gtcatttgaa tggatacgcg cgccgacggt
     1561 cagccatctg tcgatggcca tgccgactgc gtcgaaacca gagccgagat tcgaagtcga
     1621 cgcgggaact cgcacgctca gttcgcgtac gctcaattcg cgtacgttcg attcgcgcgc
     1681 acgtgtcgtc acgtcagctc ggccgtagca agaaatcgcg gagcgcgccg taccttgctc
     1741 ttctgctcga atgcatatgc gagtttgagc agcatgggct cgctccacgc gggaccgaaa
     1801 aaggaaagcc ccaccggcag tccgaacgaa taaccggccg gcactgtgat gtgcgggtac
     1861 cccgcgaccg ccggcagtcc ggtcgcgctt ccgccaccgc gcggatcgcc cttcacgaga
     1921 tcgatgagac ctggcggtcc ctgagtaggc gcagcgatgg cgtcgagacg gtatctggcg
     1981 accgcggcgt cgatgccctg agcgcgcgaa tgctcgtgcc ccgatgcaag cgcgtccaga
     2041 tacttcttct ccgtcaatgg tccccgcgcc tccgcggtct cgaatatctc ctgtccgaaa
     2101 taaggcattt cctcggtgcg gtgcgcgttg ttgaacgcga tgagatccgc cagtgtcttc
     2161 atgggcgacg agggaccgag tgacgcgaga tacgcgttga tgtcggcctt gaattcgtac
     2221 gacagcacat caccctcgct gtcacccgaa ctaccgatct cgatcggatc tatgatgatc
     2281 gcaccggccg atttcatgag cgctattgcc tcgtcgacga tcgcgtccgt cgcgacgctg
     2341 tatccgaagt aacgcttgcg cggaatgccg attctcgcgc ccttgagtcc gttcacatcg
     2401 agaaatgcag tgtaatcgcc gtgcgcgtga cccgcgcttg gcgcagtcgc gttgtccgct
     2461 ggatccacgc cggtcagcgc gccgagtaga attgcggcgt cggtcaccgt gcgagccatt
     2521 ggtcccgcgg tgtcctgtga atgcgagatg ggaattattc cggagcgact gaccaggccc
     2581 accgtcggct tgagcccgac cagtgagtgc accgacgacg gcgacgttat cgacccatcc
     2641 gtctccgtgc cgaccgcgat ggcgcacaag cttgccgcag cggccgcacc ggagccggag
     2701 ctggatccgg acggcgtacg atcgagcgcg tacggattgt gagtctggcc gccgatgccg
     2761 ctccatccac tggacgaatg cgtggaacga taatttgccc attcgctcag attcgtcttg
     2821 ccaagtatca ccgcacccgc agcccggagt cgtgcagcca ggaaagagtc gcgtggcgga
     2881 atcgaatgcg cgagcgcgag cgagccggcc gcggtcgtca tgcggtcgtg cgttccgatg
     2941 ttgtccttga tgagaaccgg aatcccgtgc atgggcccgc gcacgtgtcc cgatttacgc
     3001 tccgcgtcga gcgcagacgc aattgcgata gcatccggat tgagctggag cacgctacgg
     3061 atcgccggtc cagtgcgatc gatctccgag atccgcttga gatacatctc gcacagcgcc
     3121 tgcgaagtgt atcggccgga tttcatccag gcctgtagct gcgagatcgt tacttcatcc
     3181 agctcgaacg tcgctggtcg agtttcgccg tgcgtgagtt ccgtgtcaac tatcggtgaa
     3241 gcgctcgcgc cagtggccgc ggcaagcgcg cccgcgattc cgacaccgac gaacgcccgc
     3301 cggctgagtt tggaggaaac gccgtcgttg gatgatgatc cagtcattgg tcggtgttga
     3361 ggaagcgtgg gcccgatcca gcgtgcaggg cacgatggat gcgttttcag ataatactat
     3421 tctgcccaaa cttcaggggg acgcaatggc ggacaaggac aaatcgggca aggtcacgca
     3481 ggccgactcg agcaaggaaa accggactga caaggtcagc ggtcgtagtt tcggccgcgg
     3541 aatgacctcg cccgattcac gagaagcggt actcgacgcc agtaccggag aggtcgatcc
     3601 gagagcggca ggcgagggct cgcttccgcc gggcgagagc gaaccgaatc gaaagaacag
     3661 aaagaagaac tcctagcgcg aatgcgaatc gcgtaatcgg aaaccgcaga gggagcgtac
     3721 ctgccgtcca cgtttgacga cagtcgtacg ctctccttgt atgcttgccg tgtacgcttg
     3781 ccgtgtacgc tctgcgctgg cccgcggcgt tcgcgctaca gcacggtcag aattcgcgct
     3841 tccgcatttc cttgaagaac atctcgccgc gctcgcgctc cttgagactc gcttcgtcga
     3901 tgggatcatc tgcgaggtta acatcgtact tcttgccgaa gcccttgcgc gtcgaagtgg
     3961 ctgatgctgc cttcgcagcg ttcttcttca ccagagcttc cagctgccgc ttgtccattt
     4021 tcccgccgtg ttgaggagtc atagatcgat caggtccatc gtcccatatg actcataaat
     4081 ctagacgcgc gcaacgcgca aggtagcgcc ggacgccgag gaaccgggca cgacccgggc
     4141 gcgacctgtg cggcgacgtg tgacccggac gggcgggcga agggtcgctg ttgcatgcgc
     4201 cgccgctgtc atggcacgac cagaattccc acgcttccgc cgaactcatc ggtcgcgacc
     4261 ggaaggccgg gtgcgggaac ccacgcgccc gaatcggccc gcacttcggc gcgatggctg
     4321 ccctgctcca gcggaatgcg gacctgccat tttccggtgg gcgaacggac catcgtgact
     4381 ggcagccaac cggtgaaatc gcccatgatc tccacggacc gggcgctctc gagcgacacg
     4441 ctgatcatcc gtcggccgtc gtctgccgcg gcacttaccg aggtagcgcg cgacgtgctc
     4501 gatatgacgg cgggcgcatg atctcttccc gacgccccga gcgcgattcg caatccgatg
     4561 gatgcgtatg ctgcgcccag cgttccgcgc gtcggatcgg gcggctgcgc accggcgtat
     4621 ccgatcagcg aaacgggccc gccgagccgc accgtcgcca ctcccagcgc ccacgcgtgt
     4681 cggccttgca agtcgtcggc cgagcgcacc cctccatcgc cgccaattac caatcgcgga
     4741 atgcccgatg gcccacttcc caacagcgca agctgcgcgt gcatcactgc ttcgctgtat
     4801 ctcagcgagc cgctggcaac ggtgccgatt tcgccaccga gcgttgcaga cgcggattgc
     4861 acagacgcgc cgagacgggc gtgcgacgtg ttacgcaccg aaaccgcatc gacccgtcca
     4921 acgccagcgt cgagccaacc ggccaccgct ccgcgctcgg aggatcgacc gagcgtcagc
     4981 gatgcctcgc cgtatcggga cgacgtttcg ccgcggtagg caccggcgcc cgcatccgcc
     5041 cggatcgccg agatgttacg gcggtcggac gacagcgcga acgagccgtg caactcgccg
     5101 tagccggtcg tgctacctgt ctcgaagcgg gcgagactgg ctgttccgat tccagagaac
     5161 cggccgttcg tcccccagag agacgaaccg agactggtga gtgacgcgcg cgcgtatcca
     5221 tcaattttta ttgatgcgat gtcgccgtcg aacagcacac catggccggc tggttgccga
     5281 gccgattgcg cgtggagcat caggggagcg ccggcaactg cgagcaatgc gacaagcaag
     5341 tgcagtgcaa gcagcgcagc cacgtgaacg cagctgcgca tccccgtccg gttacaccgg
     5401 acgaaaacag gccggatgac ttgatgctct atggcttcgg cttggggggc gcgggtagag
     5461 gcacggtttt gccagtgaac gccgtcaagg cgtgcggtgc ggcagcggct ggcatctgca
     5521 tggttgtaat tgccgtcaac ggtgcaacgc cgcccgcgat atcatgcgac acgctgcgtc
     5581 cgtatgcaag gagaccggaa tcattctgtt gcttcgcgtt ggccaccact gcgacgattg
     5641 ccgatggcgc aggcgccccg tcgacgatga gagaggccag gaccgaaagc ggaacaacga
     5701 gttgccgccc gggcagctcc ttgcgcaact gagtgagtcc gtccggcgtc gacccagccc
     5761 gcagggccgc aaccgccgca gcgagctcgt tgtcagacga gggaccaagt gcgcgtcggg
     5821 cgatgccgag atcgttggcg actccgcgta cggcaatcat gatccggtta tcgtcggcgc
     5881 ccttgctgat cccttcgagc gtcttgtcga ccaggggtgc gaccggcaag ccagcatgcg
     5941 caatggagtc ggcgactgca gtcacctgag ccttgagcga agccgacgcc cggccgtcca
     6001 gctgccgcaa tgcgccggtg ccctgggcgt tcgcgacact gctgccaggg gccagcgcca
     6061 cgaccgcgac gattacggcg actatggtga tgaatcgttt catcatgccg accccgatcc
     6121 ggctacggtc actaccgaat tggtcgcacc gaaatcatcg ccggcatcgc gcggggcctt
     6181 cggatccggg acccaacggt gcccatcaat tacaaactga tacacatatc gtccagcgcc
     6241 gagcggaatg tcggcggtcc aggtgttttt gtcgattcgg cgaagcggcg tcgctgccgt
     6301 gctccaacca ttgaagcttc cagcaaccgc aaccgcggac gcgcccgacg caaccagcgt
     6361 gaaccggacg ttgctgaccg c
//
LOCUS       DATIMD010000005         6072 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4621980, whole genome shotgun sequence.
ACCESSION   DATIMD010000005 DATIMD010000000
VERSION     DATIMD010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6072
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4621980"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..948)
                     /locus_tag="VLI40_00105"
     CDS             complement(118..948)
                     /locus_tag="VLI40_00105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95595.1"
                     /translation="MTSISLHPTPSSRTVATEEFRAVGLALRTEAIFFVAALVVFGVI
                     IVAAAVRFAHGDHSPNARMGFRYDSSGAIPMFLVGLLIPFGVWRSEDPARRSYHWSMP
                     VARGPHTVMKLLSGWGWLMIATILYLLFVIAVAYSVSMITGGEAWQRSTPAWEWAVAF
                     TAPTLGYLLTSIAVIGSDHPWRWIGGILIGYGVLLAVLKSFGMDDFVRALNAISDGRY
                     GLNAALFGTVTDGARGITVGVTRETMATMRMGTWVLAMPLWLIGSAIAVTIASYRHRE
                     "
     gene            complement(955..1878)
                     /locus_tag="VLI40_00110"
     CDS             complement(955..1878)
                     /locus_tag="VLI40_00110"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU95596.1"
                     /translation="MTSPLPTRLRDGELAVDTRGLTKRFGDQVALNDVTLQVPTGAVY
                     LLVGPNGAGKSTTLKVLLDLVRAEQGTAEVFGLDTRQRAPEVRANVGYVPERPDWGYG
                     WMRVGRLLEHHALYYPTWDASYAARLAQKFELRMERKMGVLSKGQARRVHLTMALAHR
                     PPLLLLDEPTDGLDPFMRDETLGVIADHLAESPTTVVLSTHHVEEVEGLADHIGVLRN
                     GELRAQMSRDDLNANLRRYRVEVPDGWSGVASLNGTVLRRVTAPREVQWTVWGPEAEI
                     VRKLSGSGGTVREVVPLSLIDATLALLNPND"
     gene            complement(1875..2261)
                     /locus_tag="VLI40_00115"
     CDS             complement(1875..2261)
                     /locus_tag="VLI40_00115"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HSU95597.1"
                     /translation="MLISLDPQDTRPIYIQIVDEVRRALVLGTLAPDGPLPSVRDLAV
                     KLRVNPNTVSQAYRELERQGLVYVRRGQGTYASPGQTDGTERRALAEGVAQRALHDAR
                     RNGLGVDELIDAIRNYEGQRKHEESL"
     gene            complement(2320..3030)
                     /locus_tag="VLI40_00120"
     CDS             complement(2320..3030)
                     /locus_tag="VLI40_00120"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HSU95598.1"
                     /translation="MQRATVKASAKLALLVVILVATFIVARHLGLSHGGMAKFAQRAR
                     ALRDAPYAVPLFLLIYAVAGTLGVPGSVLTLTGGAVFGFELGTLLNWIGASIAAIGGY
                     WLARLLGRDAVERLGGRKIYALEKLADAHAFSTVLRLRLIPVLPFNALNFACGLVGLD
                     FASYVAGTMIGDLPVTAAYTYFADALLSGVAGARRTALFHASVAGALLILLSFVPGLI
                     TRARDRRAREIRERESQA"
     gene            3298..4185
                     /locus_tag="VLI40_00125"
     CDS             3298..4185
                     /locus_tag="VLI40_00125"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSU95599.1"
                     /translation="MTSSRGSAKAATFIAQQMSAAGLVPAGDSGYFQRVPIALTRRAN
                     GQERLTLVTSFAALDTFPADLRKPGMNVVGMIRGSDPVLSKEVVLVDAHYDHLGIGKA
                     VSGDSIYNGADDDASGTTAVVEIARSIAAGPAPRRTILFVTTTGEEVGLLGTRWFIQH
                     PPVALTAIVSNLEIEMIGRPDSLAGGPGRAWLTGYNRSTMGPTFAAAGLPIGPDNRPD
                     QHFFERSDNIAYAEMGIPAHTMSSYNVHTDYHQPSDELSRVDFDHMTRVIQAGVKAVR
                     ILADGPVPHWNPGGQPALR"
     gene            complement(4211..5665)
                     /locus_tag="VLI40_00130"
     CDS             complement(4211..5665)
                     /locus_tag="VLI40_00130"
                     /inference="COORDINATES: protein motif:HMM:NF017722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004062 - aryl sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HSU95600.1"
                     /translation="MIRNLRLALASATMLAGVIGCSDRSAGSALTEPPEPLAVGTVNP
                     NPALADAAEISFTRGTADSVRAHYVSSDSSDVGVTPWLPAGQGTLSVVGLRAGTLYNL
                     SLEARRGQTSVLGPGTSYTSPPLPQALAGVSMTLLSGTPPTSGYTLTAISGIAGHGYL
                     LAFDGAGNIRWYHDCGPWDVQEGKQQSNGDLTVYVGNAIGSNAATGSFVEITAAGDSV
                     RSIAAKGSAYTDGHELLVQSDVNGKHVADYLFGYDIRSVDETAEGGSEGQLAGHQLLR
                     ISASGAVDTLMQSWGYWTRADRIDPPIADQSIDHPNSIDFDLDGGVIASFRNLGAVVK
                     IDPSTRKVLWQLGGARNQFTFINDPLNGFSGQHSVRVLPNGHFLIFDNGVSNTPGASR
                     AVEYAVDESAKTATMVWQYIPQPSLFNEFTGSVQRLSNGNTVVAWTNYGLIDEVAPSG
                     ALVNRMQLTLAGGVPATAAYRAIRIDNLYRYVRP"
     gene            complement(5758..>6072)
                     /locus_tag="VLI40_00135"
     CDS             complement(5758..>6072)
                     /locus_tag="VLI40_00135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95601.1"
                     /translation="VQWGKHGSLPYNVIESDLPRSRTLNLFYAAEFLLLPDIWLGKAS
                     HGGAWGFFHSYARYRDFARIIPLKSRLDGIVTTDDPRPTLDLVFGPRHADKLPWPDGR
                     SH"
BASE COUNT         1174 a         1863 c         1901 g         1134 t
ORIGIN      
        1 caccgctccg cgctcggatg tgatccagag tggtcccgtg cacgagggcg tcactgatga
       61 cgtcgatgcg gagctggacg cgctgttcac cgaactggtt gtgtagctac gtcgcgatta
      121 ctcgcggtgg cggtatgatg cgatggttac cgcgattgca gagccgatga gccagagcgg
      181 catagccaac acccacgtac ccattcgcat cgtcgccatc gtttcccgcg tcactcctac
      241 ggtgattccc cgcgcgccgt cggtgacggt cccgaatagc gcggcgttga gaccgtatct
      301 cccgtcgctg atcgcgttga gcgcgcggac gaagtcgtcc atgccgaacg acttgaggac
      361 cgcgagcaat acgccgtaac cgatgagaat gccgccaatc cagcgccacg gatggtcgct
      421 gccaatgact gcgatggagg tcagcagata gccaagcgtc ggtgcagtga atgcaactgc
      481 ccactcccaa gctggcgtcg agcgctgcca cgcctccccg ccagtgatca tcgagaccga
      541 atacgcgacg gcgatgacga aaaggagata tagtatcgtc gcgatcatca gccatcccca
      601 gcccgacaac agcttcatca ccgtatgcgg cccccgcgca acaggcatgg accagtgata
      661 ggagcggcgt gcaggatcct cgcttcgcca cacaccgaac gggatgagaa gcccgaccag
      721 aaacatcgga atggcgccgg agctatcgta cctgaatccc atgcgagcat ttggcgaatg
      781 atcgccgtgt gcaaacctta ccgctgcggc gacgatgatc acgccgaaga cgacaagcgc
      841 cgcgacaaaa aagatcgctt ctgttcgcaa tgccaagccc accgcacgaa attcttcggt
      901 cgccacggtc cgcgacgacg gcgttggatg caatgatatg gatgtcatcg tatgtcagtc
      961 gttcgggttg agaagagcga gcgttgcatc gatcaacgaa agtggcacga cttcgcgcac
     1021 cgtcccgccc gagccggaca gcttccgaac tatctcggct tccggtcccc atacagtcca
     1081 ctgcacctcg cgcggcgcag tgacacgacg aagcacggtg ccgttgagcg aggccacgcc
     1141 actccatcca tcaggtacct ccactcggta tcggcgcagg ttggcgttga gatcgtcgcg
     1201 cgacatctgc gcgcgcagct cgccgttgcg caggacaccg atgtgatccg ccagtccctc
     1261 gacttcttcg acgtgatgcg tcgagagtac gacggtagtc ggcgactcgg caaggtgatc
     1321 ggcgatcacg ccgagcgtct cgtcacgcat gaatggatcg aggccatcgg tcggctcatc
     1381 gagcaacagc agcggcggac gatgtgcgag cgccatcgtg agatgaacgc gacgcgcctg
     1441 tcccttggac aacacgccca tcttgcgctc catgcgcaac tcgaacttct gcgcgagtct
     1501 ggcagcgtag ctcgcgtccc acgttggata gtacagcgcg tgatgctcga gcagccggcc
     1561 gacgcgcatc catccatatc cccaatcggg acgctccggc acgtagccaa cgttcgcacg
     1621 tacttccggc gctcgctggc gcgtgtccaa tccaaacacc tcggcggtgc cctgctcggc
     1681 gcgcaccaga tccagcagca ctttgagcgt cgtactcttg cccgcaccgt tcggcccgac
     1741 gagcagatac acagcaccgg tcgggacctg gagcgtcacg tcgttcagcg cgacctgatc
     1801 gccgaatcgc ttggtgagtc ctcgtgtgtc gacggcaagc tcgccgtcgc ggagacgcgt
     1861 tggtaggggg ctcgtcatag cgattcctcg tgcttgcgtt ggccttcgta attccggatc
     1921 gcgtcgatga gctcgtccac gccgagcccg ttgcgtctcg cgtcatgcag agctcgctgg
     1981 gcgactccct cagccagtgc gcgacgctct gtcccatccg tctggccagg cgacgcatac
     2041 gtgccctggc ctcggcgcac gtaaaccagc ccctgccgct ccagctcccg ataggcctgg
     2101 ctcacggtat tcggattgac tcgcagcttc acggcgaggt cccggacgga tggaagcgga
     2161 ccgtcgggcg ccagcgtgcc tagcaccagc gcacgccgta cttcatccac gatctggatg
     2221 tagatgggtc tggtgtcttg tggatccagc gagattagca taacagtggt gttatggtgt
     2281 accagttgcc taatacacta tatctcgcct atcactctgt caagcttgac tttctcgctc
     2341 gcggatttct ctggcccggc gatcccgcgc ccgcgtgatg aggcccggga cgaatgagag
     2401 gaggatgaga agcgcgccgg caaccgatgc gtggaacagg gctgtgcggc gggcaccggc
     2461 cacaccggac agcaaggcat ccgcgaaata ggtataggcg gccgtaaccg gcagatcacc
     2521 gatcatggtt ccagccacgt atgacgcgaa atcgagcccg acgagcccgc aggcgaaatt
     2581 cagggcattg aacggcagca cggggatgag ccggaggcga aggacggtcg agaacgcgtg
     2641 cgcgtctgcc agcttctcca aggcgtagat cttccgtccg ccgagtcgct ctacggcgtc
     2701 ccggccgagt agccgcgcga gccagtagcc gccaatcgcg gcgatcgagg ctccaatcca
     2761 gttgaggagc gtgcccagct cgaatccgaa cacagctccg cccgtaagcg taaggactga
     2821 gccggggacg ccaagtgtcc ctgcaactgc atagatcaga aggaaaagcg gcacagcgta
     2881 cggggcatcg cgcagggccc gcgcccgctg ggcgaatttg gccatcccgc cgtgcgacag
     2941 cccaagatgg cgcgcgacaa tgaaagtcgc gaccaatatg acgacgagaa gcgcaagttt
     3001 ggcgctcgct ttgactgtag cacgttgcat tgatgaccaa tatgcacgac aatcccaccg
     3061 cgttcgtgac cggagccgtt ccgattacag cggaatttca ttcgagtgag acatcagtag
     3121 atgagtagaa tgataaaacg atgtttgggt atggctggcg tcacggccat tttgggggca
     3181 atcgcgtgtg cgtcggccgg cattccccgc caatcggcgc cggtcgatac gccggtcgcg
     3241 gaatcgcagg tgcggaccgt gatgtcagcg ctggccgacg actcgatgga gggtcgcatg
     3301 accagctcgc gggggtcggc gaaggccgcg acgttcatcg cgcagcagat gagcgcggcg
     3361 ggattggtcc ccgcgggcga cagcggctac ttccagcgtg tcccgatcgc gctcacacga
     3421 cgggcaaatg gccaggaacg actcactttg gtgaccagct ttgcggcgct ggacaccttt
     3481 ccggcggacc ttcgcaagcc cgggatgaac gtcgtcggga tgatcagggg cagcgacccg
     3541 gtgctgtcga aagaggtggt actggtcgat gcgcattacg atcatctggg catcggtaag
     3601 gcggtgagcg gcgattcgat ctacaacggt gctgacgacg acgcgtccgg tacgacagct
     3661 gtggtggaga tcgcacggtc gatcgcggct ggaccagccc cgcgccgcac gatcctcttc
     3721 gtcaccacga caggggagga agtcggccta ctcggcacac gctggttcat tcagcatccg
     3781 ccggtggcac tcactgcgat agtgtccaat ctcgagatcg agatgatcgg tcgtcccgat
     3841 tcgctggcgg gcgggcccgg ccgcgcatgg ctgacgggat acaaccggtc gacgatgggt
     3901 cccacgtttg ccgcagccgg cctgccgatt ggtcccgaca accgaccgga ccagcacttc
     3961 ttcgagcgca gcgacaatat cgcttatgcg gaaatgggta ttccggcgca cacgatgtcg
     4021 agctacaacg tgcacaccga ctatcaccag ccgtccgacg aattgtcgcg cgtcgatttc
     4081 gatcacatga cgcgtgtcat tcaggcggga gtgaaggcag tgcggattct ggcggatggc
     4141 ccggtgccgc actggaatcc cggcggtcaa ccagcactgc gttgacctga gagacactca
     4201 cgcgcgacac tcacggtctg acgtatcgat acagattgtc gatgcgaatt gcgcggtacg
     4261 ccgcggtcgc gggaacgccg ccagcaaggg tgagctgcat gcgattcacg agcgcgccgc
     4321 tcggcgctac ttcatcgatc aggccgtagt tagtccacgc gacgacggta tttccgttgg
     4381 atagccgttg caccgagcca gtgaactcgt tgaacagcga cggttgcggg atgtactgcc
     4441 ataccatcgt cgctgttttc gcggattcat cgaccgcgta ttcgacggcg cgcgacgcgc
     4501 ccggcgtgtt cgacacgccg ttgtcgaata tgaggaagtg gccatttggc agcacgcgca
     4561 ccgaatgctg tccgctgaaa ccgttgagcg gatcattgat gaacgtgaac tgattgcgcg
     4621 ctccaccaag ttgccagagc accttgcggg tcgagggatc gatcttgacg accgcgccga
     4681 ggttgcggaa tgacgcaatc actccgccgt cgaggtcgaa gtcgatcgag ttggggtggt
     4741 cgatggactg atcggcgatc ggcggatcaa ttctgtccgc gcgagtccag tagccccagc
     4801 tctgcatgag cgtgtcgacg gcgccgctcg cactgattcg aagcagctga tggcctgcga
     4861 gctgtccctc cgaaccgccc tccgccgtct cgtcgacgga gcggatatcg tacccgaata
     4921 aataatcggc aacgtgtttt ccgttcacgt cgctttgaac gagaagctcg tggccgtcgg
     4981 tgtatgcgct tccctttgcg gctatgcttc tgaccgagtc gccggcagcg gtgatctcca
     5041 cgaatgatcc ggttgcggca ttgctgccga tggcgttgcc gacgtacacc gtgagatcac
     5101 cgtttgactg ttgcttgcct tcctgcacgt cccacgggcc acagtcgtga taccaacgga
     5161 tgttgccggc cccgtcaaac gcgagcaggt acccatgacc tgctatgccc gagattgcag
     5221 taagcgtgta accggatgtc ggcggcgtgc ctgatagaag cgtcatgctc actcccgcca
     5281 gcgcctgcgg cagtggaggt gacgtgtatg aagtgccggg tccgaggacg gaagtctggc
     5341 cgcggcgtgc ttccaggctc aggttgtaca atgtaccggc gcgaaggccg accacagaaa
     5401 gcgttccctg cccggcaggg agccatggcg tgactccaac gtcgctgctg tcggacgaga
     5461 cgtagtgtgc acgcactgaa tcagcggttc cgcgcgtgaa gctgatctcg gcggcatccg
     5521 caagagccgg attggggttg accgtgccga ccgcgagcgg ttcgggcggc tctgtcaggg
     5581 cggaccccgc gcttctatca ctgcatccga tcacaccagc gagcatcgtt gcgctggcga
     5641 gtgccaggcg gaggtttcgt atcatgttta cagaggggtt cgttgacgtt ggaatccgca
     5701 cattcgacgt cagtacccgc cctgtattag ggctatttcc gaactgttta tgctttgtta
     5761 gtgcgaccgt ccatcgggcc acggcagctt gtcggcgtga cgtggtccga agaccagatc
     5821 cagcgttggc cttgggtcgt cggtcgtgac tatcccgtcg aggcgggact tgagcgggat
     5881 gatccgagcg aagtcgcggt atcgtgcgta gctatggaag aatccccacg caccgccatg
     5941 gcttgccttg cccagccaga tatccggtag cagcagaaac tcggcggcgt agaagaggtt
     6001 gagcgtgcga gagcgcggca agtcgctctc tatcacgttg tagggcaggc tgccgtgctt
     6061 gccccactga ac
//
LOCUS       DATIMD010000006         4300 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4333310, whole genome shotgun sequence.
ACCESSION   DATIMD010000006 DATIMD010000000
VERSION     DATIMD010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4300
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4333310"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2097)
                     /locus_tag="VLI40_00140"
     CDS             complement(<1..2097)
                     /locus_tag="VLI40_00140"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU95602.1"
                     /translation="MSVHQGQSEPMMEPVRTTESAARLGASLAARYRIDRELGSGGMA
                     TVYLAEDLKHHRKVAVKVLHAELSALLGPERFLKEIELTASLQHPHILPLFDSGNADG
                     FLYYVMPYVDGETLRGRLDRDKQLAIADAVRIASEAADALDYAHSRGIVHRDIKPENI
                     LLQNGHALVADFGIALAVEQAGGKRMTQTGLSLGTPQYMSPEQAMGEREIGPRSDIYS
                     LGAVTYEMLAGDPPFTGSTAQAIVAQVITSEPRSLTAQRKSVPAHVNDAVFTALEKLP
                     ADRFATATQFATALANNSSSMITGSTQRRDRSSTAWRARARDPLVFALGALAIALAVG
                     LVALSRRATGDPFALRVELPLPPGGAPSGSPALSPDGHTIVYAAQAPSGEGASPFLGP
                     VTGLYMRRLDQLTSHAIPNTNNAGLPAFSPDGKSIAVIVNRRKLIRVPLDGEPEVTLA
                     DVPDDGGVDWSSSGDIVVGGGAFEELKGLYRVKASGGALTPLTHVDMKRKEHSHEYPR
                     VLGDGRTVVFTIWYGTVDRAELAVTSLDDGSKVSPLGILAARALGVVSGQLVYVRADG
                     TVMAVPFDASRRRVSGTPVQVLDSVRMIGAETGYAAAYLTQSGGLVYATGALNRRLVW
                     VDQNGATHDAFSEPREFQFARLSPDGQRAAVGIGTGTGNNLWIVNFAAGTLTPLTTTG
                     RSRNPSWSSDGQKILFA"
     gene            complement(2072..>4300)
                     /locus_tag="VLI40_00145"
     CDS             complement(2072..>4300)
                     /locus_tag="VLI40_00145"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU95603.1"
                     /translation="QLQHPHIVPVITAGVMDVRPYYVMPFVAGESLRARLAGGTPLDL
                     SASVKVLSAVAQALDYAHRRGVVHRDIKPENILLSDGIAVVTDFGIAKAIDAAKTVAP
                     GSTLTQLGTSIGTPAYMAPEQAAGDPATDHRADIYAWGVVAYELLSGHHPFESRTSPQ
                     QLLAAHMSELPAPLRRAAPAVSPTLAALVMRCLEKDPSRRPDSAGALVDALSAPRTER
                     GPGRIAGVRRSVVAVAAILVICVAGSVAWRWRTNSVPGAQTPGAHTLAVLPFTNLSGD
                     TTQQYFADGLADELTTALGQTPGLRVTARSAAFAPALRSLDAMAAGRRLDVATVLEGA
                     VRRSGPRIRLSAELVGVHDGTVLWSDEFEHDGGDVFAAQDDLTHRVAAALHDRLAVAR
                     ATSFDRGTTDEVAYDLYLQARYLFARRGTANLLHAAALLAQAIHRDSTFARAMATLAM
                     VQVVLPEYTQLSASSATNDGQQTRDTMITAGLRNATRAIARDSTLADAYIARGYGLIA
                     RWDWNGSEASFRRALALEPLNPEAHHWHADLLYTRGDIDGALNEQRRAQQLDPTSAIV
                     VAEIANELYDKHLYAEAIATGHRASAMDPLLGFSYLNYAPAFIRMGYPDSAMDALAAA
                     QRLDGGGQDLQGAGMRAAIRAAALTRLNRNDEARQQVAIVEAMVKSGGSAYTAALARM
                     GIGDREGALRWLTRSIDAREEAPASWGVSCEPMFDPLKSDPRFGVLMARMNVHVCPPG
                     AE"
BASE COUNT          748 a         1378 c         1389 g          785 t
ORIGIN      
        1 ggcgaacagg atcttctgcc cgtcggacga ccagctcggg ttgcggcttc ggcccgttgt
       61 agtcagaggc gtgagcgtgc cagccgcaaa attcacgatc cagaggttgt tgcccgtccc
      121 cgtgccgatc cctactgcgg cgcgttgtcc atccggtgac agccgcgcga actggaattc
      181 gcgcggctcg ctgaatgcgt cgtgggtagc accgttctga tcaacccaga cgagacgccg
      241 gttcagcgca ccggttgcgt acacgagtcc gccggattgt gtcaggtatg ctgctgcgta
      301 tccggtttca gcgccgatca tccggactga atccagcacc tgcacgggtg tgccggaaac
      361 gcgtcgccga ctggcgtcga acggtaccgc catcactgtg ccgtcggcgc gcacatacac
      421 cagctgaccg ctcaccactc cgagtgccct tgcagcgagg atcccaagtg gcgatacctt
      481 gcttccatca tcgagcgacg ttacggcgag ctcggcgcga tcgacggtcc cgtaccagat
      541 cgtgaacacg acagtcctgc catcaccgag cacgcgcggg tactcgtggc tgtgttcctt
      601 gcgtttcata tcgacgtgcg tgagtggagt cagcgctcca ccgctggctt tcacgcgata
      661 gagtcccttg agctcctcga atgcgccacc gcccaccacg atgtcgccgc tggacgacca
      721 atcgaccccg ccatcgtcgg gaacgtctgc gagcgtaact tcaggctcac cgtcaagcgg
      781 gacccggatg agcttgcggc gattgacgat taccgcgatg gactttccgt cgggcgaaaa
      841 cgccggcagc ccagcgttgt tcgtgttggg aattgcgtgc gaggtgagct gatcgagcct
      901 gcgcatgtac agaccagtca cggggcccag gaacgggctc gctccctcac ccgacggagc
      961 ctgggcggca tatactatgg tgtgaccgtc cggcgaaagc gccggtgatc cggacggtgc
     1021 tccacctggt gggagcggca actcgacgcg tagcgcaaac ggatcgcctg tcgcgcgtcg
     1081 ggagagcgca acaagcccga ctgcgagagc tatagcgagc gcgccgagcg cgaaaacgag
     1141 cgggtcgcgc gcacgtgcgc gccaagccgt gctgcttcga tctcgtcgct gcgtcgagcc
     1201 cgtaatcatg gacgacgagt tgttcgcgag cgccgttgcg aactgtgtcg cggtcgcgaa
     1261 gcgatccgca gggagcttct cgagcgcggt gaacacggca tcgttgacgt gcgccggcac
     1321 gctcttgcgt tgtgccgtga gcgaccgggg ctcgctggtg atcacttgcg caacgatcgc
     1381 ctgtgcggtc gagccggtga acggtggatc accagcaagc atctcgtagg tgactgcgcc
     1441 gagcgagtag atgtcggagc gtggtccgat ctcgcgttcg cccatcgcct gctcggggct
     1501 catgtactgt ggagtgccga gcgagagccc tgtctgcgtc atgcgcttgc cgccagcttg
     1561 ctccactgcg agcgcgatgc cgaagtcggc gacgagtgcg tgtccgttct gcaggaggat
     1621 gttctccggc ttgatgtcgc ggtgcacgat cccgcggctg tgcgcatagt cgagcgcgtc
     1681 ggcggcttcg ctcgctatcc ggacggcgtc tgctatcgcg agctgcttgt cacgatccag
     1741 ccggccgcgc agcgtttcgc cgtcaacgta cggcatgacg tagtacaaaa agccatcggc
     1801 atttccgctg tcgaaaagcg ggaggatgtg cggatgctgg agactggcag tgagctcaat
     1861 ttccttcagg aaccgttccg gaccgagtaa cgcggacagc tcggcgtgca ggacctttac
     1921 tgcaacttta cggtgatgct tgagatcttc ggcgagatag accgtcgcca tgccgcccga
     1981 gccaagctca cgatcgatgc ggtaccgggc ggcgagcgaa gcgccaaggc gcgcagcgga
     2041 ctcggtcgtt cgcacaggtt ccatcatcgg ctcactctgc ccctggtgga cagacatgta
     2101 cgttcattcg cgccatgagt acaccgaagc gtggatcgga cttgagcggg tcgaacatcg
     2161 gctcgcagct cactccccag gacgcaggag cctcttctcg cgcgtcgatg ctgcgggtca
     2221 accatcgaag tgccccttca cgatctccga ttcccatccg tgccaacgct gcggtgtagg
     2281 ccgagccacc gctcttcacc atggcttcga caattgcaac ctgctggcgt gcctcatcat
     2341 tacgattcaa acgcgtgagc gcggcggcgc gtatggcggc tcgcatgccg gccccctgca
     2401 ggtcctgtcc accgccatcc aggcgctgcg ctgccgcaag tgcgtccatc gccgagtcgg
     2461 gatatcccat gcggatgaat gccggcgcgt agttgaggta cgagaatccg agcaggggat
     2521 ccattgcact tgcgcgatgc ccggtagcga tagcctcggc atataggtgt ttatcgtata
     2581 gttcattcgc gatctccgcg acgacgatag ccgacgttgg gtcgagttgc tgcgcgcgtc
     2641 gctgctcgtt cagcgcgccg tcgatgtcac cgcgtgtgta cagcaggtca gcgtgccagt
     2701 ggtgtgcctc cggattcaac ggttcaagtg cgagagcgcg gcggaagctt gcttcactcc
     2761 cattccaatc ccaccgtgcg atgagcccgt atccccgagc gatgtatgcg tcggcgagtg
     2821 tggagtcgcg tgcgatggcc cgcgtcgcgt tgcgcagacc ggcggtgatc atcgtatcgc
     2881 gagtctgctg tccgtcgttg gtcgcactcg atgcggacaa ttgcgtgtac tcggggagta
     2941 ccacctgcac catcgcaagt gtcgccatcg cgcgtgcgaa cgtgctgtct ctgtggatag
     3001 cctgggcgag cagcgctgca gcgtgcagga gattcgccgt tccgcgacgg gcgaacaaat
     3061 aacgcgcctg caggtacagg tcatacgcca cttcgtccgt cgtaccacga tcgaacgacg
     3121 tagcacgtgc tacggcaagg cgatcatgca gtgcggcggc cacgcggtgc gtgagatcgt
     3181 cctgcgccgc gaagacatca cccccatcgt gctcgaactc gtcactccac agcaccgtgc
     3241 catcgtgcac gccgacgagt tccgccgaaa gacgaatgcg cggcccggaa cggcgcactg
     3301 cgccctcgag taccgtcgcc acgtcgagcc gccggcccgc cgccatcgca tcgagactac
     3361 gcagcgcggg tgcgaaggcc gcgctgcgtg cggtgacgcg gagccccgga gtctgaccaa
     3421 gcgcggtcgt cagctcatcg gccagaccgt ctgcaaagta ttgctgcgtg gtgtcgccac
     3481 tgagattggt gaacgggagc accgcgagtg tatgcgcgcc cggtgtttgc gcacccggca
     3541 cagagttcgt gcgccatcgc cacgcgacgc ttccggccac gcagatcacg agtatcgcag
     3601 cgacggctac cacgcttcga cgtacacctg cgatgcgtcc aggcccgcgc tccgtgcgtg
     3661 gcgcgctcag cgcatcgacc aacgcgccgg ccgaatccgg gcgtcgcgac ggatcctttt
     3721 ccagacagcg catgacaaga gcggccagcg tgggcgacac agccggcgca gcgcggcgca
     3781 gcggtgcggg aagctccgac atgtgcgctg cgagcaactg ctgcggcgac gtgcggctct
     3841 cgaaagggtg gtgtcccgac agcagctcgt acgccaccac gccccacgca tagatatcgg
     3901 cgcggtggtc agtagcggga tcccccgccg cctgctccgg agccatgtac gccggcgtgc
     3961 cgatcgacgt tccgagctgc gtgagcgtgc ttcccggcgc aacggttttc gccgcgtcga
     4021 tggctttggc gatcccgaag tcggtcacta cggcgatgcc gtccgagagg agtatgttct
     4081 ccggtttgat gtcgcgatga accactccgc ggcgatgcgc gtaatcgaga gcttgcgcca
     4141 cagcggagag caccttcacc gatgcggaaa gatcgagcgg agtgccgccg gcaaggcgtg
     4201 cgcgcagcga ctcgccggcc acgaacggca tgacgtagta cggccgcacg tccatgactc
     4261 ccgcagtgat cacaggtacg atatgtggat gctgcaactg
//
LOCUS       DATIMD010000007        13534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2023265, whole genome shotgun sequence.
ACCESSION   DATIMD010000007 DATIMD010000000
VERSION     DATIMD010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 13534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13534
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2023265"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..902
                     /locus_tag="VLI40_00150"
     CDS             <1..902
                     /locus_tag="VLI40_00150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95604.1"
                     /translation="PHLAFRQSRSGRADFTFDLAQAQDTVGVDVLDASGTPIRTFKLR
                     ARAGLNRVPWDLRYDAAPQVVLRTVAPDNPHIFADPRFSGRSTRPVLHWGIEAPVRTG
                     PIASPGKYSVRLTVAGKSWTEPFEVIRDPAMPSSTADLLASTQTQVRIRNDMTDAVNM
                     INHIESMRKTIADERSANADKADVVAALDRLNNQMLGVELQLLTRSDMESDDKYYVEQ
                     FKVYMNLVWLSGEVGSGAGDVAGGADYRPTAASLEVLSGIEQALAAARTSYASLIRTE
                     IPAFNAAMRGRVPEIVPPPVANR"
     gene            919..1071
                     /locus_tag="VLI40_00155"
     CDS             919..1071
                     /locus_tag="VLI40_00155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95605.1"
                     /translation="MLPDEFAIEAANVGDFKGKLIGVRRVIGLRCGRRFAANSRIAAA
                     GGLAGS"
     gene            1191..1970
                     /locus_tag="VLI40_00160"
     CDS             1191..1970
                     /locus_tag="VLI40_00160"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HSU95606.1"
                     /translation="MGRSLGSSKKAVNVLNTVGKSSNETQMMVVPITRQTVTHQATEA
                     LRERILRGVYADDTPLRQDALAAELGVSRIPIREALRQLEAEGLVVFNPHRGAVVSSL
                     SVDEINELFELRAQIEGDLVRRAIMRTTVEHISRAREILKAYEAAFRGGEVAEWGKLN
                     WEFHSTLYAAADRPFTMAIIQRLHQQSDRYLRMQLVLTHGESRAIDEHRAILAAVAAQ
                     DVKQACALMRQHILGAGRQLARFVSAEREAEEGRPTKERRS"
     gene            1967..3421
                     /locus_tag="VLI40_00165"
     CDS             1967..3421
                     /locus_tag="VLI40_00165"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSU95607.1"
                     /translation="MTGSDSRRLQQFIDNGWRDSETDGWIDDVNPSDVRDVVALVPEG
                     SANDAHAAASAAARAFPAWRALTGPARAEHLYKWAAAIGDRAEELAQVMAREVGKPIG
                     EARGEVGRCVVILRYYAGEAVRQIGDVIPAQSPGALQFTLREPLGVVAMITPWNFPLA
                     IPLWKVAPALAFGNTVVLKPAESSSYLAALLAETASAAGIPAGVFNVLFGAGATVGAA
                     LLGAPEVRAVSFTGSGAVGARVAATAAARNIRYQTEMGGKNVVIVMPDADLAKAASLT
                     AAGAMRYAGQKCTATSRVVVARSVENEFLSQLRSQVESLPIGPVTDAKAAVGPVISRV
                     SHDSITRALKDANAESLFSVPIPTSAEFSNGNFFAPTVVRGGDPDGMLAQRELFGPVL
                     AAFTADDADHAIELANRTSYGLSASIFTRDLTTALHYIDRIHVGLVRVNGDTTGVDPH
                     APFGGMKGSSSGSREQGPAAREFYTEIKTVQVNP"
     gene            3418..4422
                     /locus_tag="VLI40_00170"
     CDS             3418..4422
                     /locus_tag="VLI40_00170"
                     /inference="COORDINATES: protein motif:HMM:NF017365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline racemase family protein"
                     /protein_id="HSU95608.1"
                     /translation="MTSGAATAEMDVIEDESSAFPDRIHVVDSHTEGEPTRVVLDGWP
                     QPRGATMAERSEDLRARFDHLRRAVVREPRGNDAIVGALLTPPVNPDSTTGVIFFNNG
                     TYLGMCGHGAIGVVRTLQYLGRVQPGRIRLDTPVGTVSAELGADGSVTIENVPSFCHA
                     RNVEVQVPGVGRVVGDVAWGGNWFFITHDTPIAVTAANAKELTRVTQAIQDAINAAGI
                     TGANGEPIDHIEISAAPTRADADCRNFVLCSGGEYDRSPCGTGTSAKLAVLYAKGEIT
                     LGTRWRQESITGSLFTGWLTTNERGELIPHIRGTAYVTAEATLLFDQADPFRGGVPSA
                     "
     gene            4403..5584
                     /locus_tag="VLI40_00175"
     CDS             4403..5584
                     /locus_tag="VLI40_00175"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSU95609.1"
                     /translation="MGFPRRDLHWFGAAHGWDAVTLHHDAVVVGAGIVGAACAEALAR
                     ADMSVLVLDASFAGSGTTAAGMGHLVVMDDSPAQLALTAYSARLWTALAPDLPRNVEH
                     EACGTLWVAEDDEQLDAVRAKQRVYAESGVETDILSPAQLAEAEPHLRPGLAGALRVP
                     GDAVIYPPNGARALLQRAIANGAKLREGVRVNAIGAHEVIAGNERISCDHVINAAGAL
                     VPDLTPGIPIVPRKGHLVITDRYPGFCRHQLVELGYLTSAHTMTTESVAFNVQPRATG
                     QLLIGSSRELVGWDASINRSIVRRMLDRALDFMPGLALTSAIRMWTGFRPATPDKLPL
                     IGPWYDTPGLWIAAGHEGLGITTSVGTGQLLADLITGREPAIDPAPFAPSRVLAGVGA
                     H"
     gene            5850..7196
                     /locus_tag="VLI40_00180"
     CDS             5850..7196
                     /locus_tag="VLI40_00180"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HSU95610.1"
                     /translation="MMALLAGTDMTLVVADVAVIGAGPAGIAAAVRAAESGLHVVVLD
                     RGLESGGQIWRHVSGGSIPRTAQHWLAQLARSGARVIHGTSVVDVLNDGAEFNILADS
                     SGSALHVRARTIILATGARELFIPFDGWTLPGVMGIGGTQALLKSGASFRGKRVIIAG
                     SGPLMLPVAASLAKSGAKLTLVAEQAPRSAVMRFGAGLWRAPALIAQAARYRARFLST
                     SYSTGTWVTAAHGTDRVESVTLTNGRRTWHEAVDVLCTGYGLVPSIELARLLGCETRD
                     GAIVVDAQQRTTVANVLAAGEATGIGGAPLSLIEGEIAGLAASPHARISDAFSRKRAS
                     LQAAAERMLGAFALRDELRALPSTDTVVCRCEDVSYGSVKNAACARQAKLYTRVGMGP
                     CQGRTCMPGLDFLLSWQPDTIRPPIEPALVSVLSSELADNATPSILFNSSVGEAYQ"
     gene            7193..8128
                     /gene="dapA"
                     /locus_tag="VLI40_00185"
     CDS             7193..8128
                     /gene="dapA"
                     /locus_tag="VLI40_00185"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HSU95611.1"
                     /translation="MKKAQWTGVFPAITTPFKQDLTVDHEFVARHVSWLVDHGCTGIV
                     ALGSLGESATLNFDEKVEILRTCVNSVGKRVPVVAGIAGLQTAECVALAKRAAQVGCE
                     GIMALPPYVYKGTWPEMRAHFSAVIEATDLSCMLYNNPIAYGTDVTPEQVEELTKHPN
                     LHAVKESSGDVRRVTAVVARVGDRLNVFAGLDDMIVESVVMGASGWIAGLVNAFPAES
                     VELVRLATAGRIKEAREIYNWFLPLLRLDTVPEFVQYIKFVQQEMGCGTASVRPPRLE
                     LSASAAAETRKLLADRLARRPVVKSTPMMATASAA"
     gene            8155..10446
                     /locus_tag="VLI40_00190"
     CDS             8155..10446
                     /locus_tag="VLI40_00190"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HSU95612.1"
                     /translation="MNLHPSCRRFGMLRHMAYIGVAAATASTVPAQLHAQLPAQVDSS
                     LHRIFDSRAYVGDRAAPARWRDDGTHYTTLEPSKDIAGGTDIVQYSAQTGARQVLVSA
                     RLLRPSPSAMPLQIDDYKWSQDGSHLLIFTNTQKVWRQNTRGDYWVLDTHSGALHRVG
                     ASTEPSTLMFAKFSPDGSHVAYVYKGDLYVEPTAGGAVTRLTSDATPTLVNGMSDWVY
                     EEEFDLRDGFRWSPDSRHIAFWQFDMSGVRNFTLINDTDSLYPVTKEIQYPKAGTTNS
                     AVRVGVVDARGGPVVWARLTGDPRNNYVPWMEWADTNNVVIQRMNRLQNTDNLVLASV
                     ATGDIHHLLTEKDTTWVDMREQDFQWLNGGKEFLWPSERDGWRHIYVGSRATGELRLV
                     TPGAYDVVSVAGVDQKRGWLYIVASPTNATQRYLYRVSYRSPGPPERVTPVNLTGTNS
                     YSISPNAQWAVHTYSTFDTPPVTDVVELPAHRSARTLVTNAALKTAVASLVQPPVEFF
                     QVHISDGATLDGWMLRPRNFDPGKKYPVLVQVYGEPAAQTVVDRWGGPGMLWHRMLAD
                     LGYIVVSFDTRGTPAPKGRAWRHVIYGAIGPLSSKEEADAVRTFARTRSYADSNRVAI
                     WGWSGGGSSTLNAMFRYPDVYKLGMAVAPVADQRLYDTIYEERYVGLPSTNAHGYDVG
                     SPINFAQGLRGKLLVVHGSGDDNVHYQGTERLVNRLVSLGKEFDMMVYPNRTHCICEG
                     AGTTLHVYSLLTRYLLTNLPPVK"
     gene            complement(10462..11883)
                     /locus_tag="VLI40_00195"
     CDS             complement(10462..11883)
                     /locus_tag="VLI40_00195"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSU95613.1"
                     /translation="MTTRRAAWWAPLAFVALVLAVLTATPVLVNYRVRRLRDQLTDGS
                     GAGRVIVNDLEVAFATQLLIHEGENAAGTPAASASGDSLSKLRERVDEVALDSVVRRV
                     GPDAVERFVELRTLAESWHDRMNSRVATSGIATARLTRGLSTTAQQVLNSAESLDNYF
                     QKLGLQQRGRIRSLERMNLISAVILAPLALAAALVLFWTGRRTLFFAQAAERDRAALA
                     RAMLSKATLVRGLTHDLKNPLGAAYGYAELLEDNLVGPVSTEQREMLGRIKGLVTLSV
                     TTVDDLLELYRDGSEGLQLQRVPTEMQSLARVVVTDFMAEAQQAKLDIAFDGDMRLES
                     DEPRAAVNASTLASTDPARVRQILGNLVSNAIKYTPAGGRVRVSVRGPSKSDPRIAID
                     VRDTGPGIPAPFQERIFEEFFRLPENEGVAGSGVGLAISRRFARLLGGDITVTDWFEG
                     GSVFTLWLPADQTGNHNAPVRVA"
     gene            complement(12151..>13534)
                     /locus_tag="VLI40_00200"
     CDS             complement(12151..>13534)
                     /locus_tag="VLI40_00200"
                     /inference="COORDINATES: protein motif:HMM:NF017262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="copper resistance protein CopC"
                     /protein_id="HSU95614.1"
                     /translation="AHAHLVRSAPAAGARLDVSPTLIKLWYSEAADATMTTISITGPD
                     GSRTSPGAVKVDPNNPLLLVATIDVPLPAGKYTVSWRTVAKDDGHPSNGSFTFTVVGA
                     APGTVGTTSPAATGSTRVTPSDSTRAVVPTTPPVHAMSVEAPSYVLARWLDFVALVTV
                     VGAAAFVLLVLPRVDAHNDEDRVGDFDARATRRAATLGLAAGIAFLIAAVWRLYAEHA
                     VVGGGVAMGAVLSSFWGNVWIAQFVIAVIVCVAFALARSSRRGGLVWLAVAVVAVVLA
                     ATPAFSGHAIAAPGNKGISIALDVIHVIAAGAWLGGLLTLTVAGVPAALSVGESGDAV
                     AGGDAGARGRISLVARLVNAFSPLALVFAGLVVASGVIAAWMRIGSFGALFHSTYGTV
                     LLIKVGLVILVLAGGAFNWLRMRGALAHHATGGSAVDTFRRSAWIELTAGVLVIAVTA
                     VLVATQPPVR"
BASE COUNT         2527 a         4256 c         4297 g         2454 t
ORIGIN      
        1 cgccgcatct ggcgtttcgc cagtcgcggt cggggcgcgc cgacttcacg ttcgatctgg
       61 cgcaggcgca ggacaccgtg ggcgtcgacg tgctggacgc atcaggcaca ccgattcgca
      121 cgttcaagct tcgagcgcgc gcgggactca atcgtgtgcc gtgggatctg cgctacgacg
      181 ctgcgccgca ggtcgtgttg cgcaccgttg ctccggacaa cccgcacatc ttcgccgatc
      241 cacgattcag cgggagatcg acgcgtcccg tgttgcactg gggaatcgaa gcgcccgtcc
      301 ggaccggccc gatcgcatcg cccggcaagt attcggtgcg gctgaccgtg gctggaaaga
      361 gctggaccga gccgttcgaa gtgattcgcg atcctgcgat gccatcgtcg acggcagatc
      421 ttctcgcgtc cacgcagacc caggtgcgga ttcgcaacga catgaccgat gcggtgaaca
      481 tgatcaatca catcgagtcc atgcgaaaga cgatcgccga tgagcgcagc gcaaatgctg
      541 acaaggcgga cgtcgttgcg gcactggatc gtctgaacaa tcagatgctc ggtgtcgagc
      601 tgcaattgtt gacgcgctcg gacatggaga gcgatgacaa gtattacgtg gagcagttca
      661 aggtatacat gaatcttgtc tggctctcgg gcgaggtcgg cagtggtgca ggggacgtgg
      721 ctggtggcgc ggattatcgg ccaacagcag cgtcgctcga agtgctgagc gggatcgagc
      781 aggcgctggc tgctgcccga accagctatg caagtctgat caggacggag atcccggcgt
      841 tcaacgccgc gatgcggggt cgcgtgccgg aaatcgttcc gccaccagta gcgaatcggt
      901 aatgatgtgg ggcagccgtt gctgcccgat gagtttgcca ttgaagccgc caatgttggc
      961 gacttcaagg gcaaactcat cggcgtgcgc cgggtgatcg ggctccggtg cggccggcgc
     1021 tttgcggcga acagccggat tgcggcggcc gggggccttg ccggatcgtg aaaaaaatgg
     1081 gatattgtat ccaatccacc gtggccggtg gcgagtcgcg gcaagtcggc ttatctctac
     1141 ggattgtttg gcccagaaac tccacattcc aactccggag aacatagcaa atgggtcgct
     1201 ccctcggttc atccaagaaa gccgtcaacg ttctcaacac cgtcggcaag agctccaacg
     1261 agacacagat gatggtagtg ccgatcacgc ggcaaactgt cacgcatcag gcgacggaag
     1321 cgttgcgtga gagaatcctg cgcggcgtgt acgccgacga tacaccgctc cgacaggacg
     1381 cgctggcagc cgagttgggt gtgagccgaa ttccaatccg cgaagcgctt cgccagctgg
     1441 aagcagaagg gctcgtggta ttcaatccgc atcgtggagc ggtggtctca tcgctctcgg
     1501 tggatgagat caacgagttg tttgaattgc gcgcgcagat cgagggcgac ctggttcgcc
     1561 gtgcgatcat gcggacaaca gtggaacaca tctcgcgcgc cagggagatt ctcaaggcct
     1621 acgaggctgc atttcgcggt ggcgaagtcg ccgagtgggg caagctcaac tgggaatttc
     1681 attcgacgct ctacgcggcg gctgaccgtc cgttcacgat ggccatcatc cagcggctgc
     1741 accagcagag tgaccggtac ctccgcatgc agctggtgct cacgcacggc gagtcgcgcg
     1801 cgatcgatga gcatcgcgcc attcttgcgg ctgtcgcggc gcaggatgta aagcaggcct
     1861 gcgcgctcat gcggcaacac atacttggcg ccggacgtca gctcgccagg tttgtcagcg
     1921 cggagcgcga ggctgaagaa ggtcgaccaa caaaggaacg aagatcatga caggtagtga
     1981 ttccaggcgg ttgcaacagt tcatcgataa tggctggcgt gacagtgaga cagatggatg
     2041 gatagatgat gtgaacccct ccgatgtgcg cgacgtcgtg gcgctcgtgc cggagggatc
     2101 agcgaacgat gcgcatgctg ccgcgagtgc ggcggccagg gcgttccccg catggcgcgc
     2161 actaactggc cctgcgcgcg cggagcatct ctacaagtgg gcggccgcga tcggtgaccg
     2221 ggccgaagag ctggcccagg tcatggctcg cgaagtcggc aagccgatcg gcgaggcgcg
     2281 cggcgaggtt ggccgctgcg tcgtcatcct gcgctactac gcgggcgagg cggtgcgtca
     2341 gatcggcgat gtgattccag cgcaatctcc aggcgcactt caattcactc tgcgcgagcc
     2401 actcggcgtc gtagcgatga taacgccgtg gaattttccg cttgccattc cgttatggaa
     2461 ggtcgctccg gcgctcgcat tcggtaatac cgtcgtgctc aagcccgccg agtcgtcgtc
     2521 gtatctggcg gcactactcg cggagaccgc gtccgcggct ggtatccccg ccggcgtatt
     2581 caatgtgttg ttcggcgccg gcgccacagt tggcgcggct ctactcgggg cgccggaagt
     2641 ccgggccgtg agcttcacgg gatctggcgc cgttggcgca cgggtcgctg ccaccgcggc
     2701 agcacgtaac atccgatatc agacggagat gggcggcaag aacgtcgtca tcgtcatgcc
     2761 cgatgccgac ctcgcgaagg ctgcgtcact cactgcggcg ggcgcaatgc gctacgcggg
     2821 ccagaagtgt acggcaacga gccgggtggt cgtcgcacgc agcgtcgaga acgaatttct
     2881 gagtcagctc cgctcgcagg tggaatcgct tcccatcggg ccggtcacgg atgcgaaggc
     2941 tgctgttggc ccggtgatca gtcgagtatc gcacgattcg ataacgcggg cactcaagga
     3001 tgccaacgcc gagtcgctgt tttcggtgcc gataccaacg tccgcggaat tcagcaacgg
     3061 caatttcttt gcgccgacgg tggtgcgtgg cggcgatcct gacggaatgc tggcgcagcg
     3121 cgaactgttc ggccctgtgc tcgcggcgtt cacagccgac gatgccgacc acgccataga
     3181 gctcgccaat cgtacttcgt atggactcag tgcatcgatc ttcacgcgcg atctgaccac
     3241 agctctgcat tacatcgatc gcattcacgt cggcctggtg cgcgtgaacg gtgataccac
     3301 cggtgtcgat ccgcacgcac cgtttggtgg aatgaagggc tcgagctccg gcagtcgcga
     3361 gcagggaccc gcggcgcgcg agttctacac cgagatcaag acagtgcagg tgaatccgtg
     3421 accagcggag cagccaccgc ggagatggat gtgatcgaag acgaatcatc ggcgtttccc
     3481 gacaggattc atgttgtcga ctcgcacacc gagggcgagc ccacacgcgt ggtgctggat
     3541 ggatggccac agccccgtgg cgcgacgatg gctgagcgga gcgaggatct gcgtgcgcgc
     3601 ttcgatcacc ttaggcgcgc agtggtgcgc gagcctcgtg gcaacgacgc gattgtcggc
     3661 gcgttgctga cgccgccagt gaaccccgat tcgacgaccg gagtgatttt tttcaacaac
     3721 ggcacgtacc tgggaatgtg cggacacggc gcgatcggcg tcgtgcgtac gctgcagtat
     3781 ctcggtcgcg tccagcctgg cagaatccgg ctcgacacac cggtcggaac ggtgtccgcg
     3841 gagctcggtg ccgacggaag tgtgacgatc gagaacgtcc cgtcattctg ccacgcgcgc
     3901 aacgtcgaag tccaggtgcc cggcgtgggt cgcgtggtgg gtgacgtcgc atggggtggc
     3961 aactggttct tcatcacgca cgacaccccc atcgccgtga ccgcggcgaa cgcaaaggaa
     4021 ttgactcgcg tcacgcaggc aatccaggac gccatcaatg cggccggcat cacgggagcg
     4081 aacggtgagc cgatcgatca catagagatc tccgctgcac ccacgcgcgc ggatgcggac
     4141 tgcaggaact tcgttctgtg ctcgggcggt gaatacgacc gctcgccctg tggcacgggc
     4201 acgtcggcaa agctcgcagt gctctacgcg aagggtgaga tcactctcgg cactcgctgg
     4261 cgccaggaga gcatcactgg aagcctcttc acaggctggc tcacgacgaa cgagcgtggc
     4321 gaactgatcc cgcatattcg cggcaccgca tacgtaacag cggaagcgac gcttctattc
     4381 gaccaggcgg acccgttccg cggtggggtt ccctcggcgt gacctgcact ggttcggtgc
     4441 cgcgcatgga tgggacgcgg tgactttgca ccacgacgcc gtggttgtcg gcgcgggaat
     4501 tgtcggtgcg gcatgcgcag aggcgctggc tcgcgcggac atgagtgtgc tggtactcga
     4561 cgcgagcttc gcaggcagcg gtacgactgc cgccggcatg ggccatctcg tagtgatgga
     4621 tgactcgccc gcacagctcg ctctcaccgc gtactccgcg cgattgtgga ccgcgctggc
     4681 gccagacctg ccgcgtaacg tcgagcacga agcgtgcggc acgctctggg tcgctgaaga
     4741 tgacgagcag ctcgatgcag tacgtgccaa gcagcgcgtc tatgcggaga gcggagtcga
     4801 gaccgacatc ctgtcaccag cgcaacttgc cgaagccgaa ccgcacttga gacccggcct
     4861 cgccggcgcg cttcgcgtgc ccggtgacgc agtcatctat ccgcccaatg gcgcgcgtgc
     4921 attgttgcag cgcgcaattg ccaacggcgc caagttgcgc gagggcgttc gcgtaaacgc
     4981 gatcggtgcg cacgaagtga ttgccgggaa cgaacggatc tcgtgcgatc acgttatcaa
     5041 tgcggctggc gcgctcgtgc cggacctcac tcccggaatt cccatcgtgc cgcgcaaggg
     5101 acatctcgtc atcaccgaca ggtacccggg cttttgccgc caccagctgg tcgagcttgg
     5161 atatctgacc agcgcgcaca ccatgacgac cgaatccgtc gcgttcaacg ttcagccacg
     5221 agctaccgga cagctgttga tcggttcatc gcgcgagctg gtcggatggg atgcgtcgat
     5281 caaccggtcg atagtgcgca ggatgctcga ccgcgcactc gacttcatgc cgggcctcgc
     5341 cctcacgtcc gcaatcagga tgtggacggg ctttcgccca gcgaccccgg acaagcttcc
     5401 tctcatcggt ccgtggtacg acacgccggg actgtggatc gcagcgggcc acgagggact
     5461 cggcatcacc acgtctgtcg gaacgggaca actgctcgcc gatctcatca cgggccgcga
     5521 gcccgcgatc gatcccgcgc cctttgcgcc gtcgcgcgta ctcgcaggcg tgggggctca
     5581 ttgatggcga gcaatggcgc taccaccgaa ctgaacatcg ttgtcgacga ccgtcgcatg
     5641 cgtgtcgccg cgggtactac tgtcgcggcc gcgctgttca atcttgggat cacggccttt
     5701 cgcagatctg tttccggaga gccgcgaggg cccgtgtgcg gcatgggcgt gtgcttcgag
     5761 tgcagggtga cgatcgacag caggccgcat cagcgcgcat gtctgattgc cgtcgccgat
     5821 ggcatgcata ttcggactgc gaccggaaca tgatggcgct gctcgcgggt acggatatga
     5881 cgctcgtcgt ggccgacgtt gcggtgatcg gtgcggggcc ggccggcatc gccgctgcgg
     5941 tgcgcgccgc cgagtcgggt ctgcacgtcg tcgtgctgga ccgcggactg gagtccggcg
     6001 gccagatctg gcgtcatgtg agcggtggct cgattccgcg cactgcgcaa cactggctcg
     6061 cccagctcgc gcgctcgggt gccagggtga ttcacggaac ttcggtagtg gatgtgctga
     6121 acgacggcgc cgaattcaat atcctggccg attcgtccgg tagcgcgctg cacgtgcgcg
     6181 cgcgcacgat catactagcg accggtgcgc gggaactgtt catcccgttc gacggatgga
     6241 cgcttcccgg cgtgatgggc atcggtggta cccaggcgct actcaagtcc ggcgcgtcgt
     6301 tccgcggcaa gcgcgtgatc attgccggct cgggtccgct catgctcccg gtcgcggcgt
     6361 cgctagcgaa atccggcgcg aagctgacgc tcgtcgcgga gcaggcgccg cggagcgcgg
     6421 taatgaggtt cggagcgggc ttgtggcgag cgccggcgct gatcgcgcag gcggcgcgct
     6481 atcgcgcgcg ctttctctcc acatcctatt caaccggtac gtgggtgacc gctgcacacg
     6541 gaacggatcg cgtggagagc gtaacactga ccaacggccg tcggacctgg catgaggcag
     6601 tggacgtgct gtgcacgggc tacggcctgg tgccgagcat cgagcttgca cgactgctcg
     6661 gctgcgagac gcgcgacggc gccatcgtgg tcgacgcgca acagcgcaca accgtcgcga
     6721 acgtgctggc tgcaggagag gcaacgggaa tcggcggtgc accgctctcg ctcatcgagg
     6781 gcgagattgc aggactggct gcctcgccgc acgctcgcat ctccgatgca ttctcacgaa
     6841 aacgtgcatc gctccaggcg gccgctgagc gcatgctcgg tgcattcgcg cttcgtgatg
     6901 agctgcgcgc gcttccttcc accgataccg tcgtgtgtcg gtgcgaggat gtgtcatacg
     6961 gctcagtgaa gaatgcggcc tgcgcgcgtc aggccaagtt gtacacacgt gtcggcatgg
     7021 gtccctgcca gggccgcacg tgcatgccag ggctggattt ccttctctcc tggcagccag
     7081 acacgattcg cccgccgatc gaaccggcgc tcgtgtcagt tctgtcgtcg gagctcgcgg
     7141 acaacgcgac tccgtcgatc cttttcaatt cctctgtcgg agaagcgtac caatgaagaa
     7201 ggcgcaatgg acgggtgtgt tccccgcgat cacaacgccg ttcaagcagg atctgactgt
     7261 cgatcacgaa ttcgtggcgc gccatgtttc gtggctcgta gatcacggct gcaccggcat
     7321 cgttgcgctc gggtcgcttg gtgaaagtgc aacgctcaac ttcgacgaaa aggtcgagat
     7381 cctgcgaacc tgtgtgaatt cagtcggcaa gcgggtcccg gtcgtcgcag gcatcgcggg
     7441 tcttcagacc gccgaatgcg ttgcactcgc caaacgcgcg gcgcaggtgg gatgcgaagg
     7501 catcatggcg cttccaccgt atgtctacaa gggtacctgg ccggagatgc gagcacactt
     7561 cagtgctgtg atcgaagcga cggatctctc gtgcatgctc tacaacaatc cgatcgcata
     7621 cggtacggac gttacccccg agcaggttga agaactgacg aagcatccga atctgcatgc
     7681 agtcaaggaa tccagcggcg acgtgcgacg cgtcactgcg gtcgttgcgc gtgtgggtga
     7741 tcggctcaac gtcttcgccg gtcttgacga catgatcgtc gagtcggtcg tcatgggcgc
     7801 cagcggatgg atcgccggcc tggtcaatgc gttccccgcc gaatccgtgg aactcgtaag
     7861 actggcgact gccggcagga tcaaggaggc acgcgagatc tacaactggt ttctcccact
     7921 gctgcgcctc gataccgtgc cggaattcgt ccagtacatc aagttcgtgc agcaggagat
     7981 gggttgtgga accgcgtctg ttcgcccgcc gcgcctcgag ctgtcggctt cggccgccgc
     8041 ggaaacgcgc aagctgctcg ccgatcgcct cgcacgtcgc cccgttgtca aatccacccc
     8101 gatgatggcc accgcgtctg ccgcctgatc ggtaacatcc tcacgacggt caacatgaat
     8161 cttcatccga gctgccgccg attcggcatg cttcgccaca tggcgtacat cggggtggcc
     8221 gcggccaccg cgtcgactgt tccggcacag ttgcacgcgc agcttcccgc gcaggttgat
     8281 tcgtcgctgc acaggatctt cgattccaga gcgtacgttg gcgatcgggc cgcccccgcc
     8341 cgctggcgtg atgatggcac gcactacacc acactcgagc cgtcaaagga tattgccggc
     8401 ggaacggaca tcgtgcagta ctcggcgcaa accggcgcga ggcaggttct ggtatcggcc
     8461 cgcctgcttc gcccgtcgcc gtcggcgatg ccgctgcaga tcgacgacta caagtggtcg
     8521 caggacggca gccatctgct catcttcacg aacacgcaga aggtatggcg tcagaacaca
     8581 cgtggagatt actgggtgct cgatacgcac tccggtgctc tgcaccgggt cggcgccagc
     8641 accgagccca gcacactcat gttcgccaag ttctcgccgg acggatcgca cgtcgcatat
     8701 gtctacaagg gcgacctgta cgtcgagccg accgcagggg gcgctgtaac gcgcctgacg
     8761 agcgacgcga cacctacgct cgtcaatgga atgagtgact gggtgtacga ggaggaattc
     8821 gatctgcgcg acggattccg atggagtcct gattcacggc acatcgcgtt ctggcagttc
     8881 gacatgtcgg gtgtccgcaa cttcacactc atcaacgata cggattcgct gtatcccgtc
     8941 acgaaggaga ttcagtaccc gaaagcggga acgacaaatt cggcggttcg tgtgggcgtg
     9001 gttgacgccc ggggcggccc ggtggtctgg gccaggctca ccggtgatcc acgcaacaac
     9061 tacgtgccgt ggatggaatg ggcggacacg aacaacgtcg tcatccaacg gatgaatcgt
     9121 ttgcagaaca cggataacct cgttcttgcg agcgttgcca cgggcgacat tcatcacctg
     9181 ctcacggaga aggataccac ctgggtcgac atgcgcgagc aggacttcca gtggctgaac
     9241 ggcggcaagg agtttctctg gccgagtgag cgcgacggat ggcgtcatat atatgtggga
     9301 agtcgcgcga caggcgagtt gcggctcgtt acccccggcg cgtacgacgt agtctctgtc
     9361 gccggcgtcg atcagaagcg cggctggctc tacattgttg cgtcgccgac caacgcgacg
     9421 cagcgatatc tgtatcgcgt atcctaccgg tcaccgggac cgcccgagcg cgtgactccg
     9481 gtaaatctca ccggcaccaa cagctattcg atctcaccca acgcgcagtg ggctgtccat
     9541 acgtattcga cgttcgacac gccgccggtc accgacgtcg tcgagctgcc tgcgcatcgc
     9601 tccgcccgca cactcgtcac caatgcggcg ttgaaaaccg ccgtcgcgtc actggtacag
     9661 ccgcccgtcg agttttttca ggtccatatc agtgacggcg ccacactcga cgggtggatg
     9721 ctgcgaccgc gcaacttcga tcccgggaaa aaatatccag tactcgtgca ggtatacggc
     9781 gagccggccg cgcagactgt ggtggaccgt tggggcggcc ctggaatgct gtggcatcgc
     9841 atgcttgccg acctcggcta catcgtcgtc agcttcgaca ctcgcggaac tcccgcgcca
     9901 aagggccgcg catggcgcca cgtgatttac ggcgccattg gaccgctttc aagcaaggaa
     9961 gaggcggatg cggtacgcac gttcgcgcgc accagatcgt acgccgacag caatcgcgtc
    10021 gccatatggg gttggagtgg cggcggatcg agcacgctca acgcgatgtt ccggtatccg
    10081 gacgtctaca agcttggcat ggcggtggcg ccggttgcgg atcaacggtt gtacgacacg
    10141 atttacgagg agcgctacgt ggggctgccg tccacgaatg cgcatggata cgacgttggc
    10201 tcgccgatca acttcgcgca gggattgcgc ggcaagttgc tggtggtaca cggatcaggt
    10261 gatgacaacg ttcactatca gggcacggag cgtctcgtca atcgcctcgt ctcactcggc
    10321 aaggagttcg acatgatggt gtaccccaac cgcactcact gcatatgtga aggcgcggga
    10381 acgacgctgc atgtgtattc gttgctgaca cggtatctgc tgacgaatct accgccggtc
    10441 aaatgatcgt catccccgct ttcatgcaac ccgcaccggc gcgttgtggt ttcccgtctg
    10501 gtccgccgga agccacaatg tgaataccga tccgccttcg aaccagtcgg tcaccgtgat
    10561 gtcgccaccc aacaggcgtg cgaaccgacg gctgattgca aggccgacac ccgatcctgc
    10621 aaccccctcg ttctcgggaa ggcggaaaaa ctcttcgaag atgcgctcct gaaacggcgc
    10681 gggaatcccc ggacccgtat cccgtacgtc gatcgcaatg cgcggatcgc tcttgctcgg
    10741 ccctcttacc gacactcgca cacgaccgcc ggccggtgtg tacttgatcg cgtttgaaac
    10801 gaggttgccg aggatctgcc gcacgcgtgc aggatcggtg ctcgcaagcg tcgatgcatt
    10861 gaccgccgct cgcggctcat ccgactccaa tcgcatgtcg ccatcgaacg cgatatccag
    10921 cttcgcctgc tgtgcctcag ccatgaagtc agtcacgaca acgcgtgcca ggctctgcat
    10981 ctctgtcgga actcgttgca gctgcaatcc ctccgagcca tcgcgataca gctcgagcag
    11041 gtcgtccacg gttgtcacgg acagcgtgac aagccccttg atcctgccaa gcatttcgcg
    11101 ctgctcggtg gaaaccggtc cgaccaggtt gtcctcgagc agctccgcgt atccgtacgc
    11161 ggcgccaagc ggattcttga ggtcgtgtgt cagtccgcga acgagcgtgg ctttggataa
    11221 catcgctcgc gcaagcgctg ccctgtcgcg ttcggcggcc tgcgcgaaga acagcgtgcg
    11281 ccgccctgtc cagaagagta ccagcgctgc ggcgagcgcc agcggcgcga gtatcactgc
    11341 cgaaatcagg ttcatccgct cgaggcttcg aatacgtcct cgctgttgca gccccagctt
    11401 ctggaaatag ttatccagcg actcggcgga attgagaact tgctgcgcgg tggtgctcag
    11461 acccctggta agccgcgccg tagcaatacc ggacgtcgca acacgtgaat tcatgcggtc
    11521 atgccatgac tccgccaatg tgcgtagctc cacgaagcgc tcgacggcgt ccggcccaac
    11581 ccgtcgcacg accgaatcga gcgccacttc gtctacccgc tcacgcaatt tggagagcga
    11641 gtcgcctgat gcactcgccg ccggcgttcc ggcggcattc tcgccttcgt gaatcagcag
    11701 ctgggtcgcg aacgctactt cgagatcgtt cacgatcact cgacctgcgc cgctgccatc
    11761 tgtaagctgg tcgcgcagtc ggcgcacgcg ataattcacc aacaccggcg tcgcggtcag
    11821 gacagcaagc acgagtgcga caaacgcgag aggcgcccac caggctgctc gccgtgtcgt
    11881 caaaatggaa tcgtcaacgc ttccggcgcg gagtcctcgc gccggcgtgg cccagcgcgt
    11941 caggctggat tggcttggcc cgcccgtcat gccgaatccc tcgatcgttg aagtcgcaaa
    12001 atgggcgctc gcgaccagcg tcagcgtccg gtcacgtcac caggagcgat atcataccca
    12061 ccgatcggta ccatggtcca ggctgccctg cggacagccg atcagctcag accgggtgcg
    12121 aacccgggtg cgaacagtga acgagttgta tcagcgcacg ggcggctgcg tcgccacaag
    12181 gacggccgtt acggcgatca ccaacacacc ggcggtaagc tcgatccatg ccgagcgccg
    12241 gaacgtatcg acagccgacc cgccagtcgc atggtgagcg agtgcaccac gcattcgcag
    12301 ccagttgaat gcgccgccgg caagcacgag tatcaccagc ccgaccttga tgagcagcac
    12361 cgttccatac gtcgagtgga atagcgcccc aaaagatccg atgcgcatcc atgcagcaat
    12421 cacgccgctg gcaacgacga gccccgcgaa gaccagcgcc agcgggctga acgcgttcac
    12481 caatcttgcg accagcgata ttctccctcg cgcaccggca tctccgccgg ccactgcatc
    12541 gccagattcg ccaaccgaga gcgccgccgg tactcccgcg acagtcagcg tgagcaaacc
    12601 accgagccac gcgccggcgg cgattacgtg gatgacgtcc agcgcgatgg agatcccctt
    12661 gtttccgggc gcagcgatcg cgtgtccgga gaacgccggc gtcgccgcca gcacaacggc
    12721 gacaaccgcc acagcaagcc agaccaatcc gccccggcgc gagctgcgag ccaacgcaaa
    12781 ggcaacgcac acgatcaccg cgatcacgaa ttgcgcaatc cagacattgc cccagaacga
    12841 gctcaggaca gcgcccatcg ccactcctcc tccgacgaca gcgtgttctg catacagtcg
    12901 ccacaccgcc gctatcagaa acgcgattcc cgcagccagc cccagtgtcg ccgctcgtct
    12961 ggtcgcgcga gcgtcgaagt caccgactct gtcctcgtca ttgtgcgcgt ccacccttgg
    13021 aagtaccagc aacacgaacg cagccgctcc cactaccgtt acaagcgcga cgaagtccag
    13081 ccagcgcgca agcacatagc tcggcgcttc cacgctcatg gcgtgcacgg gcggggtcgt
    13141 agggaccact gcgcgggtac tgtcgctcgg cgtcacgcgc gtcgatccgg ttgcggcagg
    13201 tgatgtggtg ccgacagttc ccggcgccgc gccgaccacg gtgaaggtga aacttccgtt
    13261 tgagggatgt ccatcgtcct tcgcgacagt gcgccagctc accgtgtatt tgccagccgg
    13321 aagaggcacg tcgatcgtcg cgaccagcag caacggattg ttcggatcga ccttcaccgc
    13381 cccgggcgac gtgcgactgc cgtcgggccc ggttatggag atcgtggtca tcgtcgcgtc
    13441 ggcggcttcg ctgtaccaga gcttgatgag cgtcggcgaa acgtccagac gagcgccagc
    13501 ggcgggcgcg ctcctgacga gatgtgcatg ggcc
//
LOCUS       DATIMD010000008         1762 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2889822, whole genome shotgun sequence.
ACCESSION   DATIMD010000008 DATIMD010000000
VERSION     DATIMD010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2889822"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1135)
                     /locus_tag="VLI40_00205"
     CDS             complement(<1..1135)
                     /locus_tag="VLI40_00205"
                     /inference="COORDINATES: protein motif:HMM:NF039904.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HSU95615.1"
                     /translation="MEIIRDPIWNNIRLDALALELVDTPVFQRLRYVRQLGLAYLVYP
                     GATHTRFEHALGAYHLCRIAIGLLRERGIADVPDEECTITTIAALLHDVGHYPFSHAL
                     EEIGAVHHEEVATALVTTGPVASILRTRIGENAPERIIALIRGEADSPLQGLVSGSLD
                     LDKIEYLKRDAHMCGVAYGEIDVDRLINSMVLVGDPVTGLQTVGVAEKGLSALESLLF
                     AKYQMYRNVYWHHAVRSATAMYKRVVEDACESGTLTQERLVGFTDEGLLYVLQDRAPS
                     PLLAALRSRHLYKRVAEWPASELDDGFGDWIGNDRPRTRAAEDAIGSMLGLRSGELLL
                     DYPEKTQMLGLDIAVLRRDATVETLTNRGISGAINLPRLSEELY"
     gene            complement(1191..>1762)
                     /locus_tag="VLI40_00210"
     CDS             complement(1191..>1762)
                     /locus_tag="VLI40_00210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HSU95616.1"
                     /translation="PKNVVLLTADAFGVLPPISRLTPEQAMYYFLSGYTAKVAGTERG
                     VTEPQATFSAAFGAVFLVWPAAKYADMLGELLRKHGSNVWLLNTGWSGGPYGVGKRMK
                     LSYTRAMVNALLSGALDKVPTTTDPIFGLNVPQSVPDVPKEILSARGTWEDKDAYDTQ
                     ARKLAGMFRENFAKFKGTSEAIRAAGPKG"
BASE COUNT          304 a          554 c          566 g          338 t
ORIGIN      
        1 gatacaactc ttcggaaagg cgcgggaggt tgatcgcgcc ggagatgccg cgattcgtga
       61 gtgtctcgac agttgcgtcg cggcgcagca ccgcgatgtc caacccgagc atctgcgtct
      121 tttcggggta gtcaagcaac agctcaccgc tgcgcagacc cagcatcgat ccgatcgcgt
      181 cttcggctgc gcgcgtgcgc gggcgatcgt tgccgatcca gtcgccgaat ccgtcatcca
      241 gctcggacgc cggccattcg gccacacgct tgtatagatg ccgcgagcgg agcgcggcga
      301 gtaacggaga cggcgcacgg tcctgcagga catagagcag gccttcgtcg gtaaaaccga
      361 cgagcctttc ctgcgtcagc gttccgctct cgcacgcgtc ttccaccaca cgcttgtaca
      421 tcgctgtcgc actgcgtacc gcgtgatgcc agtacacgtt gcggtacatc tggtacttgg
      481 cgaacagcag cgattccagc gcggacaatc ccttctcggc gacgccgaca gtttgcagtc
      541 cggtgacggg atcgccgacg agcaccatcg agttgatgag acggtcgacg tcgatctcgc
      601 catatgccac gccgcacatg tgcgcatcgc gcttcaggta ttcgatcttg tcgagatcga
      661 gcgatcccga taccagtcct tgaagcggtg agtcggcctc gccccggatg agcgcgatga
      721 tgcgctccgg cgcattctcg ccgatgcgcg tccggaggat cgacgcgacg ggtccggtgg
      781 tcacgagcgc tgtcgctact tcttcgtgat ggactgcgcc gatttcctcg agagcgtgcg
      841 agaacggata gtggccgaca tcgtgcagca gcgctgcgat cgtagtgatc gtgcactctt
      901 catcggggac gtcggcgatg ccgcgctcgc gcagcaggcc gatcgctatc cggcagaggt
      961 gatacgcgcc gagtgcgtgc tcgaagcgcg tgtgcgtggc gccgggatag acgagatacg
     1021 caagccccaa ctgccggacg taacgaaggc gctggaatac cggtgtgtcc accagttcca
     1081 gcgccaacgc gtcgaggcga atgttattcc agatggggtc gcggatgatt tccatgaccc
     1141 gaaagctaac tccgccgggg gtgcgcggcg ttagccggat tccccgttcg ttatcccttt
     1201 ggtccggcgg ccctgatcgc ctcggaggtg cccttgaact tcgcgaagtt ctcgcggaac
     1261 atgccagcga gcttgcgcgc ctgcgtgtcg tacgcgtcct tgtcttccca cgtgccacgc
     1321 gcgctcagga tctccttcgg tacgtccggc accgactgcg ggacgttgag gccgaagatc
     1381 ggatccgtcg tggtgggtac cttgtcgagc gcgccgctca acagtgcatt gaccatcgca
     1441 cgcgtgtagc tcagcttcat gcgcttgcca acgccgtacg ggccgccgct ccacccggtg
     1501 ttgaggagcc acacgttgga gccatgcttg cgcaggagct cgccgagcat gtctgcgtac
     1561 ttggccgccg gccagacgag gaacaccgcg ccgaatgcgg cactgaacgt agcctgtggc
     1621 tctgtcacgc cgcgctcggt gccggcgacc tttgcagtgt agccggacag gaagtaatac
     1681 atcgcctgtt cgggcgtgag cctggagatc ggtggcagca cgccgaacgc atcggcggtg
     1741 agcagcacga cgttcttggg at
//
LOCUS       DATIMD010000009         3555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2690, whole genome shotgun sequence.
ACCESSION   DATIMD010000009 DATIMD010000000
VERSION     DATIMD010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3555
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2690"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..1714)
                     /locus_tag="VLI40_00215"
     CDS             complement(86..1714)
                     /locus_tag="VLI40_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HSU95617.1"
                     /translation="MHDVSGRPSVSGREAESGRETPSGIPVQVVYRPDDAATDYDRDL
                     GDPGKYPFTRGVQASMYRGRLWTMRQYAGFGTAEETNRRFRLLLERGQTGLSVAFDLP
                     TQMGIDSDSPRALGEVGRAGVAIDTVEDMHALLADLPLETVSTSMTINATAATLLAMY
                     IVVAEERGISRAVLSGTIQNDLLKEYIARGTYIYPPGPSLDLIAEIFRFCADEVPRWN
                     PISISGYHIREAGATAVQELAFTFANAIEYVKRAISAGLEIDTFAPRLSFFFASHNDL
                     FEEVAKFRAARRMYARIMRDRFGARDASCRMRFHTQTGGVTLMAQQPLNNIVRVTVQA
                     LAATLGGTQSLHTNGYDEALALPTAEAATLALRTQQIIGYESGIANTVDPLAGSYYVE
                     ALTDQLESRAMDLIAKVDEIGGAERAVAAGFFQEAIARSAYEFQLRVEGGETAIVGVN
                     KFADDAEPPVIPSPDYSALEQEQVGKLARVRAGRDAGRVSEALAALRDAAGRIGEGNT
                     QLMPLIIDAVRARASVGEISETLAACWGTYNPAL"
     gene            complement(1730..2758)
                     /gene="fbp"
                     /locus_tag="VLI40_00220"
     CDS             complement(1730..2758)
                     /gene="fbp"
                     /locus_tag="VLI40_00220"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HSU95618.1"
                     /translation="MVKHTATSVVTIERYIIEQEHLYPEATGELSGLLYDIALAAKMI
                     ANKVRMAGLADIIGATENENVQGEIQQKLDVLANDMIIKALDHSGRLCAMASEEEPDI
                     IQIPDNFRCGKYCLLFDPLDGSSNIDVNVPVGTIFSVLRKITRGARGEMEDMLQPGRR
                     QVAAGYVIYGSSTMMVYTTGQGVHGFTLDPQIGEFLLSHPNIRIPEHGRYLSVNDSYE
                     QVWDEDVRSLMRRYRGLDGMRDPMSVRYVGSLVADFHRNLLGGGLFAYPANENNPRGK
                     LRLLYEANPLAFIVEQAGGLGSNGSIRILDVEPTELHQRTPLFIGSKHDVMTADLMLS
                     RPMLAEQA"
     gene            complement(3132..>3555)
                     /locus_tag="VLI40_00225"
     CDS             complement(3132..>3555)
                     /locus_tag="VLI40_00225"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HSU95619.1"
                     /translation="WRRGVAQSLIVSGVATLVTAPLVGCWFGRLSLVAPLTNLVADPV
                     IAVVQPMLFLALVLAPWPAAARFVALAAHPLLVSFEAIARFAASLPYAAVAVTISSIG
                     VLLSMIAAVAIVVACTSRFPGRSMAIAACATCLTVWLA"
BASE COUNT          714 a         1119 c         1084 g          638 t
ORIGIN      
        1 gcgagggagc gacgtttatg acatgttggt gcagtcgttc aatttacgag gcggcgtgcc
       61 ctacctcaac cgctgtacga ggagatcaca gcgcaggatt gtaggtgccc cagcacgcgg
      121 caagggtctc ggatatctcc ccaacgcttg cgcgggctct tacggcatcg atgatgaggg
      181 gcatgagctg cgtgtttccc tcgccaatcc ggcctgccgc gtcgcgcagg gcagcgaggg
      241 cttctgacac gcgaccagcg tcgcggcctg cacgcacgcg cgcaagcttc ccgacctgtt
      301 cctgctccaa cgcggaatag tccggcgatg gtatgaccgg cggctccgca tcgtcggcga
      361 atttattgac gccgacgatc gccgtttcac caccctcgac gcgaagttga aactcgtacg
      421 cacttcgcgc gatcgcttcc tgaaaaaatc ccgccgcgac tgcgcgttca gcaccgccga
      481 tctcgtcgac cttcgcaatg agatccatcg cgcggctctc cagctgatcg gtgagcgcct
      541 cgacgtaata gctgccggca agcggatcga cagtgttcgc gattccggac tcatagccga
      601 ttatctgttg cgttcgcaac gccagcgtcg cagcctcggc ggttggaagc gcaagcgcct
      661 cgtcgtaacc attggtatgc agcgattgcg taccgccgag cgtggccgcc aacgcctgca
      721 ccgtaacgcg cacgatgttg ttgagcggct gttgggccat cagcgtcacg ccgcccgtct
      781 gcgtgtggaa acgcatcctg caacttgcat cgcgcgcgcc gaacctgtcc cgcatgatcc
      841 gggcgtacat gcgccgcgcg gcgcgaaatt tggcgacttc ctcgaacaga tcgttatgtg
      901 acgcgaagaa gaatgacagg cgcggtgcga acgtgtcgat ctcgaggccg gccgagatcg
      961 cacgcttcac gtactcgatt gcgttggcga atgtgaacgc gagctcctgc acggctgtcg
     1021 caccggcttc acggatgtga tagccggaga tggagatcgg attccagcga ggcacttcat
     1081 cagcgcagaa gcggaagatc tccgcgatca gatcgagact gggccccggc ggatagatgt
     1141 acgtcccgcg cgcgatgtat tccttgagca gatcgttctg gatcgtaccg ctcaacactg
     1201 cacgcgaaat tccccgctct tcagcgacga cgatgtacat cgcgagcagt gtcgcagctg
     1261 tcgcgttgat ggtcatcgac gtcgacacgg tctccagcgg cagatccgca agcagcgcgt
     1321 gcatgtcctc gacagtgtcg atggctacgc ctgcgcggcc gacctcgcca agcgcgcgcg
     1381 gcgagtcgga gtcgataccc atctgcgtcg gaaggtcgaa tgcgaccgac agaccggtct
     1441 ggccgcgctc gagcaataat cgaaagcgcc ggttggtctc ttccgcggtc ccgaagccag
     1501 cgtactgccg catcgtccac aggcgaccgc gatacatgct cgcctgtaca ccgcgtgtga
     1561 acggatactt gccgggatcg ccgaggtcgc gatcgtaatc ggtcgctgcg tcgtccggac
     1621 ggtacactac ctgaaccgga atcccggacg gagtctcgcg cccggactcg gcttccctgc
     1681 cgctcactga cggccgtccg gaaacgtcat gcaacagcca ggctcgatac tacgcctgct
     1741 cagcgagcat cgggcgcgac aacatcaggt cggccgtcat cacatcgtgc ttgctgccga
     1801 tgaacaacgg tgtgcgctga tgcagctcgg tcggctcgac gtcgagaatg cgaatcgatc
     1861 cgttgctgcc gagtccgccg gcctgctcga ctatgaaagc gagcgggttc gcttcgtaga
     1921 gcaggcgcag cttgccacgc gggttgttct cgttcgcggg atatgcgaac agaccaccgc
     1981 ccagcagatt gcgatggaaa tcggcgacga gcgatcccac gtatcgcacg ctcatgggat
     2041 cacgcatgcc gtcgaggccg cgataccgac gcatcagcga gcggacatcc tcatcccaga
     2101 cctgctcgta tgaatcgttg acggacagat agcggccgtg ctcgggaatt ctgatgttgg
     2161 gatgcgacag caggaattcg ccgatctggg ggtccagtgt aaagccgtgc acaccctggc
     2221 cggtggtata gaccatcatc gtgctggatc cgtaaatcac ataaccggcc gcgacctggc
     2281 ggcggcctgg ctgcagcata tcctccatct cgccgcgagc gccgcgcgtg atcttgcgca
     2341 gcacggagaa gatggttccg accgggacgt tcacgtcgat gttggaagac ccgtccagtg
     2401 gatcgaagag gaggcagtac ttgccacagc ggaaattgtc cggaatctga atgatgtccg
     2461 gctcttcttc cgacgccatc gcacagaggc ggccgctatg atccagcgcc ttgatgatca
     2521 tgtcgttggc gagcacatcc agcttctgct ggatctctcc ctgtacattc tcgttttcgg
     2581 tggcgccgat gatatccgcc aggccggcca tccggacctt gttggcgatc attttcgccg
     2641 cgagcgcgat gtcgtacagc agcccggaca gctcgccggt cgcttcagga tacaggtgtt
     2701 cctgctcgat gatgtaccgc tcgattgtta cgacggacgt cgctgtgtgc ttgaccataa
     2761 cacctcctcg gcgaactgat cggcctctac ttcgaaacgg ttccgcgaat agccacggca
     2821 cacggattcc caaaggtaac gtatggcaaa tgttttgtcc cgccggtact gcctgacgtg
     2881 acccaattca tgcaggagga gccgaaccga cggagggtgc gcagccgaca gaaaaacggt
     2941 cccgccaaac gttatgcctg ccaccgagcc gcggccgagc agccacccac cgacgcgcag
     3001 cggaaagccg ccgctccgcc atgaaaccga cgccagttcc gggaacgcgg agatgacatc
     3061 ctgcggaagc gcaaatggcg taccgatagt ttcccgaagc agcgcgcgca gtgctgccat
     3121 gattgggcgc gtcacgccag ccacacggtc aaacacgttg cgcatgcggc gatggccatc
     3181 gaccggccgg gaaagcgact ggtgcatgca acaacaatgg cgactgcggc gatcatcgac
     3241 aacagcacgc caatggatga aatcgtaacc gctaccgcgg catacggcag cgatgccgcg
     3301 aaccgtgcga tcgcctcgaa gcttacgagc agcgggtgcg ccgccagagc gacgaagcgt
     3361 gccgcggcag gccacggcgc cagcaccagt gcaagaaaga gcatgggctg cacaacagca
     3421 ataaccgggt cagcaacgag gttggtgagc ggtgccacca gactcagacg tccgaaccag
     3481 cacccaacga ggggagcggt aacgagcgtt gccacgccgg agacgatcag tgattgagcc
     3541 actccgcggc gccag
//
LOCUS       DATIMD010000010         2324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1735404, whole genome shotgun sequence.
ACCESSION   DATIMD010000010 DATIMD010000000
VERSION     DATIMD010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1735404"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..792)
                     /locus_tag="VLI40_00230"
     CDS             complement(<1..792)
                     /locus_tag="VLI40_00230"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HSU95620.1"
                     /translation="MRTHSVLTLVGIVASVGTGGTAPPAVIPLVQPNPNIDRAGVLHD
                     GVLAVTLEAKESAFLIDGAHRPPMTVAAFSEPGKVPLMPGPFVRVPRGTQLRFSIRNS
                     LGTPLTFFVPAALQGGQDRLGADDSVVVPAGDVKTVTTTATVPGNYVYRATTARGASR
                     RALMEGLLAGAIVIDTTSTSEPPRDRVFVIMQTLDSAFAAYEDTAHAPIAQAPREAGR
                     VVFTINGRSWPNTDRIHATVGDSVHWRVINASSEIHPMHLHGFYFR"
     gene            1081..>2324
                     /locus_tag="VLI40_00235"
     CDS             1081..>2324
                     /locus_tag="VLI40_00235"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSU95621.1"
                     /translation="MRLISLPLVISLTALAAVPATPVTLAPSGDILGFTPASSRAEQE
                     WETKFRAMPSPARMRADMKRLTAFPHHVGSPYDKNNAEWLLAQFKDAGWDAHIEQFDV
                     LFPTPKERKLEMISPTRFVAKLAEPPVPGDPTSYQTSQQLPPYNAYSIDGDVTGPLVY
                     VNYGIPSDYDELARRGISVKGAIVIARYGRSWRGVKPKIAGEHGAIGCIIYSDPEDDG
                     YTQDDTFPVGPARAPYSVQRGSVMEMTLYQGDPLTPGVGATKDAKRLALKDVKVFTKI
                     PVLPIGYADAKPLLAAITGDVAPRDWRGALPITYKIGPGAARVHLVVKSNWDIKPVYD
                     VIGRITGSTQPDQLVIRANHHDAWVNGADDPVAGLVAELEEMRALGALKKQGWSPKRT
                     IIYAAWDGEEPAVLGSAEWAET"
BASE COUNT          473 a          739 c          706 g          406 t
ORIGIN      
        1 acggaaatag aaaccatgga ggtgcatcgg atggatctcg ctggatgcgt tgatgactcg
       61 ccagtgaacc gagtcaccta ctgtcgcgtg tatccgatcg gtgttcggcc atgagcgacc
      121 gttgatcgtg aacaccacgc gcccagcttc ccgcggtgct tgtgcaatcg gtgcgtgcgc
      181 ggtgtcttca tacgcggcga acgccgagtc gagggtctgc atgatcacga acacgcggtc
      241 acgcggcggc tcgctcgtcg atgtcgtgtc gatcacgatc gcgccggcga gaagtccttc
      301 catcagagcc cttctgctcg caccgcgcgc ggtcgtggca cgatacacat agttccccgg
      361 cacggtagcg gtcgtcgtga ccgttttcac gtcgccagcg ggaacgacga cggaatcgtc
      421 ggcgccgagc cgatcctgcc caccctggag cgcagcgggc acgaagaacg tgagcggagt
      481 cccgagcgag ttgcggatcg agaaccgaag ctgagttccg cgcggcacgc gtacgaacgg
      541 cccgggcatg agcggcacct ttcccggttc ggaaaaggcc gcgacggtca tcggcggccg
      601 gtgtgcgccg tcgatgagaa atgcactctc tttcgcttcg agcgtgaccg caagtacgcc
      661 gtcgtgcagc acaccggctc gatcgatgtt cggattgggt tggacgagcg gtatcacggc
      721 tggcggcgcg gtgccgccgg tgccgacaga tgcaacgatt ccgaccagcg tgagaactga
      781 atgcgtgcgc atcgcacccc cagcggtgat cctacaaacc tgccatggca gaatccgcaa
      841 ctgaacgagg tcttgcacgt cgcattgtcc gcggagaacg aattgccgtg ccttgcgtcg
      901 tgcaacgtcg agcgaatgta tgagtgtctg tcggccgccg caagctaccg gcggcgggta
      961 ggcgacgaac ggcaatcgac cagcacgtca cgtcgctacc tgtatattct gcaccgcacc
     1021 catatccagt actcttcggt accactgagt accaagccca cagcagccac cacgatctcg
     1081 atgcgactaa tttcccttcc gctcgtcatc tcgctcaccg cgctcgcagc cgttcctgcg
     1141 actccggtca cgctcgcacc atccggcgac atacttggct tcacaccggc ctcgtcgcgc
     1201 gcggagcagg aatgggagac gaagtttcgc gcaatgccaa gtccggcgcg aatgcgagcc
     1261 gacatgaagc gcctgaccgc atttccgcat cacgtcggat cgccatacga taaaaacaac
     1321 gccgagtggc tgctcgcgca gttcaaggat gcgggatggg atgcgcacat cgagcagttc
     1381 gatgtgctct ttccgactcc aaaggaacgc aagctggaga tgatctcgcc gacacgcttc
     1441 gtcgcgaagc tggcggagcc gcccgtgccc ggagatccga cgtcatacca gacgtcgcaa
     1501 caactgccgc cgtacaacgc ctactcgatc gatggtgacg tcaccggtcc gctcgtttac
     1561 gtcaattatg gaattccgtc cgattacgat gagctcgcgc gacgcggaat ctcggtaaag
     1621 ggcgcaatcg tcatcgcgcg ctacggcaga tcgtggcgcg gcgtgaagcc gaagatcgcc
     1681 ggtgagcacg gcgccatcgg ttgcatcatc tattcggatc ccgaagatga cggctacacc
     1741 caggatgaca cattccccgt cggaccggcc cgcgcgccgt acagcgtgca acgcggcagc
     1801 gtgatggaga tgacgctcta tcagggggat ccgttgactc ccggtgtcgg tgctacgaaa
     1861 gacgcgaagc gacttgcgct caaggacgtc aaggttttca cgaagatccc cgtgcttccc
     1921 atcggatacg ccgatgcaaa gccactgctc gctgcgatca ccggcgatgt tgcaccacgc
     1981 gactggcgcg gcgcgctgcc gatcacgtac aagatcggac ccggcgccgc gcgcgttcat
     2041 ctcgtcgtca aatcaaactg ggacatcaag ccggtttatg acgtaatagg tcgtatcaca
     2101 ggcagcacac aaccggatca gctggtgatc cgcgccaacc accacgacgc atgggtcaac
     2161 ggcgcggacg atcctgtcgc tggcctcgtc gccgagctcg aagagatgcg cgcactcggc
     2221 gcactcaaaa aacagggatg gagccccaag cgcacgatca tctacgcagc ctgggacggc
     2281 gaggagcccg cagtactcgg ctccgcggaa tgggccgaga cgca
//
LOCUS       DATIMD010000011         2680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2891917, whole genome shotgun sequence.
ACCESSION   DATIMD010000011 DATIMD010000000
VERSION     DATIMD010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2891917"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..273)
                     /locus_tag="VLI40_00240"
     CDS             complement(<1..273)
                     /locus_tag="VLI40_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU95622.1"
                     /translation="MPNPDREAPKSGRTAHIAHVGIAVESLSAILPFFRDVLQMPEVP
                     LADSDGARIAAVESGESLIEFLEPVAPDTPIGKYLARRGSGIHHICI"
     gene            360..686
                     /gene="trxA"
                     /locus_tag="VLI40_00245"
     CDS             360..686
                     /gene="trxA"
                     /locus_tag="VLI40_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HSU95623.1"
                     /translation="MSNSVELTDATFSSEIEKHDGLAVVDFWAPWCGPCRMVGPVLEE
                     LAGEYAGKAKVAKVDVDQNQSLAQRFGVRSIPLILFFKDGKVVDQVLGAVPKAQLAAK
                     FQQHAA"
     gene            788..1651
                     /gene="rsmI"
                     /locus_tag="VLI40_00250"
     CDS             788..1651
                     /gene="rsmI"
                     /locus_tag="VLI40_00250"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: protein motif:HMM:TIGR00096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HSU95624.1"
                     /translation="MNAPSASQGMLYVVATPIGNLGDITLRAIEVLKSVNLIVAEDTR
                     HSRTLMNHLGIATPMTAYHEHNEARESPRLVRRMTEGESIALISDAGTPLLSDPGARL
                     VAAALAADLRVVPIPGASALLSALVVSGISAEQFTFLGFLPRKGGEREAMLRAMLRSP
                     FTTIVYESPQRIAATLADLVEAGCGDRAAALARELTKRFEEVRRGTVASLNETIGEGE
                     GLKGEMVLVVAGAAERAPTEAEARDTVSRMRSEGASSRDIIERLTGELGVPRNVAYKL
                     AHSPPDSTPAG"
     gene            1687..>2680
                     /locus_tag="VLI40_00255"
     CDS             1687..>2680
                     /locus_tag="VLI40_00255"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HSU95625.1"
                     /translation="MIAPLDLVAEATRMVLDEYAETEIPAVATGNTRELRVLDPSVVS
                     ADLGPHGPVARAMRQFTQRFEDRPTQRAMAEAVVGLYNTGGVGLLEAGTGVGKSLGYL
                     IPALRWAAANGERTVVSTNTINLQEQLVRKDLPFLHDALASEQNVRFALLKGWRNYLC
                     KLRLAQATLLGPSLVDDEASEALEEIRSWSETTEDGSLSDLPTPPRGEVWDEVAAEPD
                     LCTRNACPHFQDCFLFKARREAAQADVVVVNHHLLMSDVAVRRAAGNWEDAAVIPPYT
                     RLVIDEGHHLEDAASAHLGVTTSRRTLQRLFNRLDRRGRGLVTTLVERLSASRDL"
BASE COUNT          494 a          823 c          865 g          498 t
ORIGIN      
        1 gatacaaatg tgatgtatgc ccgatccacg gcgcgccagg tacttgccga tcggcgtgtc
       61 cggcgcaact ggctccagga attcgatcag cgactcgccg ctctcgaccg ccgctatccg
      121 cgccccgtcg gaatctgcca gcggcacctc cggcatctgc aacacatcgc ggaaaaaggg
      181 cagaatggcc gacagcgatt ccactgcgat tccaacgtgt gctatgtggg cggtcctgcc
      241 ggatttcggg gcttcgcggt cggggttggg cattgcttgt gcgattagat tagaaggtga
      301 gcacgtgaac gcgttttgca ctcacgataa gcggcctggt tgccgcggag aaagataaga
      361 tgtcgaattc agtggagctt acggacgcca ccttctcaag cgagatcgag aagcatgacg
      421 gcctcgcagt ggtggatttc tgggctccgt ggtgtgggcc gtgccgcatg gtcggtccgg
      481 ttctggagga gctcgctggc gagtatgccg gcaaggcaaa agttgcaaag gttgacgtcg
      541 atcagaatca gagcctcgca cagcgcttcg gcgttcgctc gatccccctg atcctcttct
      601 tcaaggacgg aaaggtcgtc gatcaggtgc tgggtgcggt tcccaaggct cagctcgcgg
      661 cgaagttcca gcagcacgcg gcgtaaccgc aacacagccg cgcgcaacgc gcccgcgttg
      721 caaccgtggt gtcgcacagt agaggggcgt tcgttcaatt tgaccatgac cttgtcgtgg
      781 tgattggatg aacgctcctt ctgcgtctca gggcatgctc tacgtcgtcg ccactcccat
      841 cgggaacctc ggcgacatca cgctgcgcgc gatcgaagtg ctcaagtcgg tcaacctgat
      901 cgtcgccgaa gacacgcggc actcgcggac gctgatgaat cacctcggca tcgcgacgcc
      961 aatgactgct tatcacgagc acaacgaggc gcgtgaatct ccacgtctcg tcaggcgtat
     1021 gaccgagggc gaatcgatcg ccctgatctc cgacgccggc actccgctgc tttcggatcc
     1081 cggcgcgcga ctggtcgcgg ctgcgcttgc agcggatttg cgcgtggtcc cgatccccgg
     1141 agcgtccgcg ctgctatcgg cactcgttgt atccggaatc tccgccgagc agttcacatt
     1201 cctcgggttc ctcccacgca agggcggcga gcgtgaggcg atgctgcgcg cgatgctgcg
     1261 ctctccattc accacgatcg tgtacgaatc accgcagcgt attgcagcca cgctggcgga
     1321 tctcgtcgag gcgggttgtg gcgacagggc ggcagcgctc gcacgcgagc ttaccaagcg
     1381 gttcgaggaa gtgcgtcgcg gtaccgtggc gtcgctcaac gagacgatcg gcgagggaga
     1441 ggggctcaag ggcgaaatgg tgctggtggt cgcgggcgcc gcggagcgtg ctccaacgga
     1501 ggcggaggcg cgggatacgg tttcgcgcat gcgctccgag ggagcgtcat cgcgcgacat
     1561 aatcgagcgc ctcacaggcg agctcggcgt gccgagaaac gttgcctaca agctggccca
     1621 ttctccgccg gattcgacgc cggctggtta agttccctgg gtggctctga acccgaaaaa
     1681 agaccgatga tcgccccgct ggatctcgtc gccgaagcga cgcggatggt gctggacgaa
     1741 tacgcagaaa ctgaaatccc ggcggtagcc actggcaaca cgcgtgagct tcgtgtgctg
     1801 gatccgtcgg tggtatccgc cgacctcggt ccgcacggac cggtcgcgcg tgccatgcgg
     1861 caattcacgc agcgattcga ggaccgtccg actcagcgcg cgatggcgga agccgtcgtc
     1921 ggactctaca acaccggcgg cgtcggattg ttggaagcag ggaccggtgt cggcaaatcg
     1981 ctcgggtatc tcatccccgc gcttcgctgg gctgcggcga atggcgagcg cactgtcgtc
     2041 tcgaccaata cgatcaatct gcaggaacag cttgtccgga aggatctgcc atttctgcac
     2101 gacgctctcg cgtccgagca gaatgtgcgc ttcgccctgc tcaagggatg gcgcaactat
     2161 ctgtgcaagc tccgcctcgc gcaggcaacg ctgctcggcc cgagtctcgt cgatgacgag
     2221 gcgagcgagg cgttggagga aatccggagc tggagcgaga caaccgaaga cggatcgctc
     2281 agcgatctcc cgaccccgcc gcgcggtgag gtctgggacg aagtcgcagc agagccggat
     2341 ctgtgcacac gcaacgcgtg cccgcatttt caggattgct tcctgttcaa ggcgcgacgc
     2401 gaggctgctc aggccgacgt cgtcgtggtg aatcatcacc tgctgatgtc ggacgtcgct
     2461 gtacgtcgcg ccgccggcaa ctgggaagac gccgcagtga ttccgccgta caccagactg
     2521 gtcatagacg aaggacatca cctcgaagac gctgcatcgg cgcaccttgg cgtcacgaca
     2581 tcgcgccgta cgttgcaacg actcttcaac aggctcgatc gtcgtggtcg cggactcgtc
     2641 acgacgctgg tcgagcgact ttcggcatcg cgcgatctgc
//
LOCUS       DATIMD010000012         2755 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1448203, whole genome shotgun sequence.
ACCESSION   DATIMD010000012 DATIMD010000000
VERSION     DATIMD010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2755
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1448203"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..188)
                     /locus_tag="VLI40_00260"
     CDS             complement(<1..188)
                     /locus_tag="VLI40_00260"
                     /inference="COORDINATES: protein motif:HMM:NF013691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HSU95626.1"
                     /translation="MVTVPENVAQKLQHLPDGPGVYLWKGADGTVLYVGKAKRLRSRV
                     RSYFASDHPFSLKTQHLVR"
     gene            complement(195..1850)
                     /gene="murJ"
                     /locus_tag="VLI40_00265"
     CDS             complement(195..1850)
                     /gene="murJ"
                     /locus_tag="VLI40_00265"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015648 - lipid-linked peptidoglycan
                     transporter activity [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HSU95627.1"
                     /translation="MAEEQTGRAAFLVGSGIFASKLAGLIRQRVFAHYLGASLANDAF
                     QGAFRIPNMLQNLFGEGVLSASFIPEYAGTLARGEKREAAELAGAVFTALALVASLIV
                     LLGVLAAPQLVGILAGGGSTLSDLAQPFARFLPASFMQWLAVTGATPAEDALTTTLVR
                     ILFPGAGLLVFSAWCLGVLNAHRKFLLSYMAPLAWNAVIIGALIIYGSHRTPPRLVVA
                     VAWASVIGSAAQFLVQVPTLRRVAPGIVPNFRFGMPGVRRVFRQFTSAFLSRGVVQIS
                     AFIDLALAYHLPIGTVSSLAYAQTLYILPGSLFGMSVSAAELPAMSSALGTPEEIAAQ
                     LRVRLNAGMERIAFFIVPCVIAFLALGDIVTGAFLQTGAFKRANTVWVWEILIGSTVG
                     LLASTLGRLDSSTYYALRDTRTPLKFAIIRIALTTVLGVIFAFQLPGWLGLDPKLGAA
                     GLTASAGIAGWVEFILLRRGLTKRIGRTGLSVRYVVKLWIAGLGAAALGTVGRFLVPT
                     SRPLILAAISLSAFAIGYAVFTIGLRIPEALMLASKLRRRSGV"
     gene            complement(1843..>2755)
                     /gene="bshC"
                     /locus_tag="VLI40_00270"
     CDS             complement(1843..>2755)
                     /gene="bshC"
                     /locus_tag="VLI40_00270"
                     /inference="COORDINATES: protein motif:HMM:NF021586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bacillithiol biosynthesis BshC"
                     /protein_id="HSU95628.1"
                     /translation="RALLAPLGVAVLDASHAAVRNAGHGVVVRALGRADEVAAALRTR
                     TRAIIDAGFHPQVADVPNLSLVFETLDDGTRRRVPLRAAQQIANGGSAGRLGPNVLLR
                     PIMERQILPTVTYVGGPGEVAYFAQVSAVADALEMAAPRISPRWSGTLLEEHIESMLT
                     RLGASIDDFADPHAVESRVAREAISPRVREAIDSLRGALDASSDAMRQDAQTNDALSR
                     SVGTMHAGVEHRLERLERRYAAAIKQAGSEKLRDVATVRATLFPDGAPQERVLSFIPF
                     LARYGSAAVDVVREQARLHVASMIHGG"
BASE COUNT          562 a          895 c          868 g          430 t
ORIGIN      
        1 cgcacgagat gctgcgtctt gaggctgaac ggatggtcgc tggcgaagta gctgcgcacg
       61 cgcgagcgca gccgcttggc ctttccgaca tacagtaccg ttccatcggc gcccttccag
      121 agatacactc cggggccatc cggaagatgc tgcagcttct gcgctacgtt ttcgggaacc
      181 gtcaccatcg aaagttatac gcctgagcgc cgccgcagtt tcgaggcaag catcagcgct
      241 tcgggaatcc ggagaccgat cgtgaagact gcgtatccga tcgcgaacgc cgagagcgaa
      301 atagcggcca gtatcagagg acgcgatgtc ggcacgagga agcgaccaac agtgccaagt
      361 gcagccgcgc cgagccccgc gatccagagc ttcacgacgt agcgcaccga gagtccggtc
      421 cgcccgatcc gctttgtaag tccgcgccgc aacaggatga actccaccca gccagcgatc
      481 cccgccgagg cggtaagacc ggccgcacca agcttgggat cgaggcccag ccagcccgga
      541 agctgaaagg cgaagatgac gcccagcacg gtcgttagcg cgatccggat gatcgcgaac
      601 ttgagtggtg tcctggtgtc gcggagcgcg tagtacgtgg aggagtccag acgcccgagc
      661 gtggatgcta gcagcccgac ggtcgagccg atgagaatct cccagaccca tacggtgttg
      721 gcgcgcttga acgcaccggt ctggaggaac gctcccgtca cgatgtcgcc gagcgccaga
      781 aacgcgatga cgcacggaac gatgaaaaag gcgatgcgct ccatccccgc attcagtcgc
      841 actcgaagct gcgctgctat ctcttccggt gtgccgagcg cgctcgacat cgccggcagc
      901 tccgcggcgg ataccgacat tccgaaaaga cttcctggca ggatgtacag cgtttgcgcg
      961 taggccagcg acgaaaccgt tccgatcggg aggtggtacg cgagcgcgag gtcgatgaat
     1021 gcgctgatct gcacgacgcc gcggctcaga aaggccgacg tgaattgcct gaagacgcgc
     1081 cggacgcccg gcattccgaa tctgaaattc gggacgatcc cgggagcgac gcgtcgcaac
     1141 gtcgggacct gaaccaggaa ctgcgcagcg ctgccgatta ccgacgccca cgcaactgca
     1201 acgacgagac gcggcggagt gcgatgcgag ccgtagatga tcagcgcgcc gattatcacc
     1261 gcattccacg ccagcggcgc catgtacgag agcagaaact tgcggtgcgc gttgagaacg
     1321 ccgaggcacc acgccgagaa cacaagcaga ccggcgccgg gaaacagaat ccggaccagc
     1381 gtggtcgtga gcgcgtcttc cgccggcgtg gcaccggtaa cggccagcca ctgcatgaat
     1441 gacgcaggga gaaaccgcgc aaacggctgg gcgagatcgc tgagcgtgct gcctccgccc
     1501 gccaggatcc cgacaagctg cggcgccgcc agaaccccga ggagaactat gagcgatgca
     1561 acgagcgcga gcgctgtgaa cactgcgccg gccagctctg cggcctcgcg cttttctccc
     1621 cgggcaagcg tgccggcata ttcggggatg aacgacgccg acagcacgcc ttcgccaaac
     1681 aggttctgaa gcatgttcgg gatgcggaac gctccctgaa atgcatcgtt cgcgagcgac
     1741 gcaccgagat agtgcgcgaa tacgcgttgc cgaatgagac cggcgagctt gctcgcgaag
     1801 ataccggacc caacgaggaa cgctgcccgc ccggtttgct cctcagccac cgtgtatcat
     1861 gcttgcaaca tggagccgcg cctgttcccg taccacgtcg acagcagcgc ttccgtaacg
     1921 cgcaagaaac gggatgaagc tcagaacacg ttcctgcggg gcgccgtcgg gaaacagcgt
     1981 agcacgaacg gttgcgacat cacggagttt ctcggatccc gcctgcttga tcgctgccgc
     2041 atagcgccgc tcaagccgct cgagccggtg ctccactccg gcatgcattg tccctaccga
     2101 ccgtgacagc gcgtcgttgg tctgcgcgtc ctggcgcata gcgtcgctgc tggcatcgag
     2161 tgcgccccgc aatgaatcga tcgcctcacg gactcgtggc gaaatcgctt cgcgtgcgac
     2221 ccggctttcg acggcatgcg gatccgcgaa atcatcgatg cttgcgccga gacgcgtgag
     2281 catgctctcg atatgctcct ccagcagcgt cccgctccac cgcggcgaga ttcgcggcgc
     2341 tgccatttcg agagcatctg cgacggctga tacctgcgca aagtacgcaa cctcgcccgg
     2401 acctccgacg tacgtcacgg tcggaagtat ctgtcgctcc atgatgggtc gaagcaacac
     2461 gttcggaccg aggcgaccag cactcccgcc attggcaatc tgctgcgccg cgcggagagg
     2521 cacgcgccgt cgcgtgccgt cgtcgagcgt ttcaaagacg agcgacagat tggggacgtc
     2581 agctacctgc ggatggaatc cggcatcgat tatcgccctt gtgcgcgtgc gcagtgcggc
     2641 cgcgacttca tccgcgcgtc cgagcgcgcg gacaacgaca ccgtggccgg catttcgcac
     2701 tgctgcgtgg gacgcgtcca gaaccgcgac gccaagtggc gcgagcaacg cacgc
//
LOCUS       DATIMD010000013         9290 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5144, whole genome shotgun sequence.
ACCESSION   DATIMD010000013 DATIMD010000000
VERSION     DATIMD010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9290
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5144"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2033
                     /locus_tag="VLI40_00275"
     CDS             <1..2033
                     /locus_tag="VLI40_00275"
                     /inference="COORDINATES: protein motif:HMM:NF016260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HSU95629.1"
                     /translation="RVYNATAQFRLDKDRDDLMLNQLRLRFDTTVYASTGPSTIHFDS
                     AETSIEHFEIKSASGGRVYVNGRIPTHGDSDLELHITQFEISNVTALLQSDVNARGLV
                     SVDAHLRGTRAAPAITGAFGLERLAYQGRAAPEVHGRVAYADETLRANVVAGREGMAP
                     ILIARGTVPINLALTSVTGSRIPHDRVIDATIDADSLPLDSIPTITDAIANLKGRALA
                     KFTVGGTVDHPDVNGRITLWNGNARLVPLGVTASYMAGNIRLVHDTVIVDSLVAHSDG
                     VVRLTGGIGIKSLAEPSFALKLTANNARVIDNDTGNLFVNANVSVNGPFNNVDVTGFA
                     HVLRGVIYIPEPTGKTLVGAGDPALYAVADTNNPSVRELFPTQSPLLANLRMNVALMV
                     DRDVFVRSNEANVEVYTDNPLRVGVNRAKQTFLVDGVLLSDRGEYRFQSRRFQIRQGS
                     ATFINSPQLNPTLQVTGEYDVQLPTREAIAIRIVISGTLDNPKISLESDAQPPISQTD
                     LLSYLAFGRTSSSLLQQEGGGLTTGGSGSSNIVGAGAAFAAKQVGAAALGALTDQAAS
                     SAARSLGADFFNITPADVSLDAGSFLRATQVEFAKYVQRNTFLQLQVRPDPASLQRPG
                     FQITHRFNTRSGYQIDASFEPRYLLSQPSLSPDQTPQTTSAFGLFLVREWRY"
     gene            complement(2034..2558)
                     /locus_tag="VLI40_00280"
     CDS             complement(2034..2558)
                     /locus_tag="VLI40_00280"
                     /inference="COORDINATES: protein motif:HMM:NF021505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2231 domain-containing protein"
                     /protein_id="HSU95630.1"
                     /translation="MESKTKLLGHPAHQIVVSFPMGLLTTAALFDAVYVVHGGQMWAM
                     VAFYMIGAGVVGGLIAAIFGLIDYVAIPSGTRAKRIGGFHGLCSVTLVTLFGVSWLLR
                     QGAPATPEPRALLFSFTGVVLLGLAGWLGGELLNRMGVGIDDGAHLNAPSSLNGPAAL
                     GVPLRGPESAHLDH"
     gene            complement(2582..2971)
                     /locus_tag="VLI40_00285"
     CDS             complement(2582..2971)
                     /locus_tag="VLI40_00285"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HSU95631.1"
                     /translation="MNIISSVAIAVVIMAASGCGGAGGYGTSPTSPSNPGNPGATCTP
                     GNGTVCLVTSNAFDPSQVTIAAGSSITFNNTSGTTHNVTFTTAGAPSNVTDFASGTRI
                     VAFPTAGTYNYHCTIHGLAMSGVVTVQ"
     gene            complement(3081..3854)
                     /locus_tag="VLI40_00290"
     CDS             complement(3081..3854)
                     /locus_tag="VLI40_00290"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSU95632.1"
                     /translation="MSRAAVQVLIVDDEPLARRHLRTILEADGEVVIAGEASNGREAV
                     QMIARLAPDLVLLDVQMPEIDGFSVVSQLDPAHVPMIIFVTAHDTYALKAFDVHAVDY
                     VLKPVARDRLMQAVARAKTRLSSSDDSTRAEHLRKFIEEMKVSRDLERLAIRLDGKHV
                     LLPTESIDWIEAVDDYVRIHMGKASHLVRGTLVSFQDRLPSLFMRIHRSAIVNTTRIK
                     EVFPNEQGDYRIILQDGTRLPSGRSYRTAVAEFLRSLTV"
     gene            complement(3851..5158)
                     /locus_tag="VLI40_00295"
     CDS             complement(3851..5158)
                     /locus_tag="VLI40_00295"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSU95633.1"
                     /translation="MTADRRSSVLDEERDRAERKLNTVRGVVLVVLAIAAAAYAPVLP
                     FSLNIVNAALLIPMLVWTVGQAWLFYSRPVLPSWLSVLNPIVDVVAVTVTMGAYGIVA
                     TPTLGLKSPMVLAYFAILAARPILSSARRAAIVAVFILVAYASLDFLFLVVYGVAIGD
                     PIAASGTASVALMDECAKLTLLAAAGGIATYATWWHEALARRYAAQAQEQTVLQMRLA
                     SSRLDSLRQQLRPHFLFNALNAITALVDADPRAAQRMISGLGELMRVSLDAGGAEEVP
                     LRDELRILDHYTAIQRIRFEDRLTIVTDVDDSVGDSLVPTLILQPLVENSIHYGLAQW
                     STRTRIEIRAWRDADTLALDVSDDGPGLKGQSADTVVEHIGIGNARARLMYLYGDAHT
                     FSIESPDRGGFRVSMRIPYHVSPADRGDLRGDLHEFQSSVRDQ"
     gene            5422..6174
                     /locus_tag="VLI40_00300"
     CDS             5422..6174
                     /locus_tag="VLI40_00300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95634.1"
                     /translation="MLALYSVPIVFSSDPASLSLPSGVFRLSGEAAYIPKASAALQHT
                     SFCYAARSQNTGLISVFGRPRLAVGLPHGFGVEVSYLPPITVANATPDLGSAAFWFTR
                     GVSSRVQLTARVHGTLGIVKGPITCSRDALQLTDPSAPCYGTKPSIDEFRPNMAGAEI
                     VASTRPATSTRFGFFGGLGVNQLDPRFRVGFTNLLGQVDHTRIVVDLTRVTALAGATM
                     QLGHRCDASAQAYTSFSDATTVRATLGCLLNR"
     gene            complement(6177..7565)
                     /locus_tag="VLI40_00305"
     CDS             complement(6177..7565)
                     /locus_tag="VLI40_00305"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HSU95635.1"
                     /translation="MPKIANDLDTFLTQHQSRIEEELFDFLRIPSVSAQPAHNADTRA
                     AAEWVKRSLEQAGLSAAIHETPGHPVVVGEWRGAGPDAPTVLIYGHYDVQPAEPLDLW
                     TSPPFEPEVREGRIYARGSVDDKGQLFLHIKALEAHLQTRRVLPCNVVVIAEGEEEVG
                     SENLEAFVERKRDLLAADAVVISDSSMFAEGIPSILSSLRGLSYFQIDVQGPSGDLHS
                     GMYGGAVVNPATALARIIASMHDENGHIAIDGFYDDVSPFPDKVLAAMRDLSHTDAEF
                     RREIGVTSLGGEKGFTTLEKLWTRPTCEVNGLLSGYTGDGAKTVLPARAMAKVSCRLV
                     PNQDPAKIARLFEAHVKKFTPAGVTVKVSYLHGGRPWRADLSGPIFDAARRALKAAFG
                     RDPVIVGEGGSIPVVGDFQRILDAPVLLVGFGLPGENAHAPDEWMSVENFRLGARAMA
                     ALWDEYAGKSRA"
     gene            7634..>9290
                     /locus_tag="VLI40_00310"
     CDS             7634..>9290
                     /locus_tag="VLI40_00310"
                     /inference="COORDINATES: protein motif:HMM:NF015168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HSU95636.1"
                     /translation="MPNRLAGETSPYLLQHADNPVDWYPWGEDALDRARRLNRPILLS
                     IGYAACHWCHVMAHESFEDAATAELMNDNFVCIKVDREERPDVDAIYMQAVQSMTGHG
                     GWPMTVFLNPAGEPFYGGTYFPPVDRHGMPSFRRVLEAVADTYRNHPDRVAASAESMR
                     RIYEASAVSNGYAGSIDSAFLEQAFHAIASGYDPRFGGFAGAPKFPPTMVLDFMLRHW
                     SRTGEAAALDMAAATFVKMARGGIYDQIGGGFARYSVDAEWLVPHFEKMLYDNALLFR
                     LGAHLYEATKNDEIRVATEKAGDWLAREMTSPEGGFYSSLDADSEGEEGKFYVWQSSE
                     LDSVLGADSPLVKAYYGVTTGGNFEGSNILHVPADPSEIARRFDLDVATLSTAIARAD
                     QSLMQRRSQRVRPGLDDTILAAWNGLALRGIVEAARAFDRADFREMATRNAEFLLGRM
                     VVDGRVMRSYKDGTARITGFLGDQAAVALGLLAMFEQSLDAKWLDAARHLTRVMLDEF
                     WDADTTTFYDTSHNAEKLVSRPHDPTDNATPSGTSLAVDLLLRL"
BASE COUNT         1828 a         2955 c         2785 g         1722 t
ORIGIN      
        1 acagagttta caatgcgacc gctcagttca ggctcgacaa ggatcgtgac gatctgatgc
       61 tcaaccagtt gcgtctcagg ttcgacacca ctgtgtatgc cagcacgggc ccctcgacca
      121 tccactttga ttccgcggag acgtcgatcg agcacttcga gatcaagagt gcatctggcg
      181 gacgggtgta tgtgaacggc aggatcccga cgcacggtga cagcgacctc gagcttcaca
      241 taacgcaatt cgagatcagc aatgtcaccg ccctgctgca gagcgacgtg aatgcgcggg
      301 gtctggtatc cgtcgacgca catctgcgcg gaacgcgcgc tgcccccgcc atcacgggcg
      361 cgttcggtct cgagcgtctg gcataccagg gccgcgcggc accggaagta cacggacgcg
      421 tggcatatgc ggacgagacg ctgcgggcaa acgtggtcgc tggccgcgaa ggaatggcgc
      481 caatcctgat cgcgcgcgga acggtaccga tcaacctcgc gctcacgagt gtgacgggct
      541 cgcggatacc gcatgaccgc gtgatcgacg ctaccatcga cgccgactcg cttcccctcg
      601 actccattcc gacgatcacc gacgccatag cgaatctcaa gggacgcgcg cttgcgaaat
      661 tcaccgtcgg tggtacagtc gaccaccccg atgtcaacgg ccggatcacg ctctggaacg
      721 gcaacgcccg tctcgtgccg ctcggcgtga cggcgagcta catggctggc aacatccggc
      781 tcgtgcatga taccgttatc gtcgattcac tcgtagcgca cagcgatgga gtggtcagac
      841 tcacgggcgg gatcgggatc aagtcgctgg ccgagccatc cttcgctctc aagcttacgg
      901 cgaacaacgc acgcgtaatc gacaatgaca ccggcaacct cttcgtcaat gccaacgtga
      961 gcgtgaatgg accgttcaac aacgtcgatg tcaccgggtt tgcgcacgta cttcgcggcg
     1021 tgatctacat acctgaaccg acaggtaaaa cgctcgtcgg ggcgggcgat ccggcgctgt
     1081 acgccgtggc cgacacgaac aacccgagcg tccgtgagct gtttccaacc cagtcgccac
     1141 tcctggcaaa tctgcggatg aacgtcgcgc tcatggtgga ccgggacgtg ttcgtacgct
     1201 cgaatgaggc gaacgtcgag gtatatacgg ataatccgct ccgggtgggc gtgaatcgcg
     1261 ccaagcagac ctttcttgtc gatggcgtgc tgctgagcga ccggggcgag tatcgcttcc
     1321 agagccgccg atttcagatc cgtcagggct ccgcaacatt catcaacagt ccccagctga
     1381 acccgactct tcaggtaacc ggagagtatg acgtgcagct tccgacacgc gaggcgatcg
     1441 cgatccggat cgtcatttcg gggacgctgg acaacccgaa gatatcgctc gagagcgatg
     1501 cgcagcctcc gatctcgcag actgatctgc tgagctatct ggcgttcgga cggacgtcgt
     1561 catcactgct gcagcaggaa ggtggcgggc tgacgaccgg cggaagtggc agcagcaaca
     1621 tcgttggagc gggcgctgcc ttcgccgcca agcaggtagg ggcggccgcg ctcggcgccc
     1681 tgacggatca ggcggccagc agcgctgcgc gatcgctcgg cgctgacttc ttcaacatca
     1741 cgcccgccga cgtatcgctc gatgcaggca gcttccttcg cgcgacgcag gtggagttcg
     1801 cgaagtatgt tcagcgaaat acattcctgc agctgcaggt gcggcccgat cctgcatcgt
     1861 tgcagcgacc ggggttccag atcacgcatc gattcaacac gcgatccggc tatcagatcg
     1921 atgccagctt cgagccgcgg tacctgctca gccagccctc cctgtcccct gatcagacgc
     1981 cacaaacaac gagcgcgttc gggttgttcc tcgtgcgcga gtggcggtac tgatcagtga
     2041 tccagatgag ctgattcagg gccacgcagc ggcacgccga gcgcggccgg gccattgagc
     2101 gagcttggcg cgttgaggtg tgccccgtcg tcgatcccca cacccatgcg gttgagcagc
     2161 tcaccgccaa gccagccggc aagccccagg agcaccacgc cagtgaagga aaaaagcagc
     2221 gcacgcggct ccggcgtggc gggcgcgccc tgccgtagca gccagctcac tccgaacaac
     2281 gtaacgaggg taacactgca cagaccgtga aacccgccga tgcgcttggc tctggtcccg
     2341 gacgggatcg caacgtaatc aatcagtccg aatatcgcag cgatcagtcc tccgacaacg
     2401 cccgcgccaa tcatgtagaa cgcgaccatc gcccacatct gtccgccgtg aaccacgtaa
     2461 accgcgtcga acagtgccgc cgtggtgagc aagcccatcg ggaaggacac aacgatctgg
     2521 tgcgcgggat ggccaagcag tttggtcttg ctttccactc aacattcctt gtgtgaacgc
     2581 gtcactgaac ggtcacgacg ccgctcatgg ccagaccatg aatggtgcag tgatagttgt
     2641 aggttccggc tgtaggaaat gccacgatac gcgtgccgga cgcaaaatcc gtaacgttgg
     2701 atggagcgcc agctgtcgtg aacgtgacat tgtgcgtggt gcccgaagtg ttgttgaacg
     2761 tgatgctgct tccggcggcg atcgtgacct gcgacgggtc gaacgcgttg ctggtcacga
     2821 gacagaccgt gccgttgccc ggcgtgcacg tcgctccagg gtttccagga ttgctcggag
     2881 aggtgggcga cgtgccgtac ccgccggcgc caccgcagcc cgatgccgcc atgataacga
     2941 ctgcgatcgc gacggaagag atgatgttca tgagtgtgcg acagataggg ggatgttcat
     3001 gaccataatg tcgctgcacg aaggcaaccc gcgcacgagg cttgcggcga agcgcagtgt
     3061 tcaagcggtg gaggccgcca tcacacggtc agcgaccgca agaattcggc gactgcggtc
     3121 cggtaacttc gccccgacgg gagtcgggtt ccgtcctgga gaatgatccg atagtcgccc
     3181 tgctcgttcg ggaatacttc cttgatgcgc gtcgtgttca cgatcgcaga ccggtgaatg
     3241 cgcatgaaca gcgacggaag ccgatcctgg aacgagacga gtgtgccgcg gaccagatgc
     3301 gaagccttgc ccatgtggat tctcacgtag tcgtccacgg cctcgatcca gtcgatggat
     3361 tcggtaggca gaagcacgtg cttgccatcg agacggatcg cgagccgctc cagatcccgc
     3421 gacactttca tttcctcgat gaacttccgg agatgctccg cgcgagtcga gtcgtcggat
     3481 gaagacagcc gcgtcttggc gcgagcgacc gcctgcatca gccggtcccg ggcgacgggc
     3541 ttgagtacgt aatccaccgc atgcacgtcg aacgccttga gtgcgtacgt gtcatgcgca
     3601 gttacaaaga tgatcatcgg tacgtgcgcc gggtcgagct gcgacaccac gctgaatccg
     3661 tcgatctccg gcatctgtac atccaggaga acgaggtccg gtgccagtcg cgcaatcatc
     3721 tgcactgcct cgcgcccgtt cgacgcctcg cccgcgatga cgacttcgcc atcggcttcg
     3781 agaatggtgc gcaggtgacg gcgcgcaagc ggctcgtcat ccacgatcag tacctgaaca
     3841 gcggctcgac tcattggtcc ctcactgagg attggaattc atgcagatca ccgcgtagat
     3901 caccacgatc cgcggggctg acgtgatatg gtatccgcat ggatacgcgg aatccgcccc
     3961 gatccggact ctcgatggag aacgtgtgtg cgtcgccgta caaatacatc aatcgagccc
     4021 gcgcgtttcc gattccgata tgctcgacta ccgtgtcagc ggactgcccc ttgaggcccg
     4081 gtccgtcgtc gctcacgtcc agcgccaggg tatccgcgtc acgccacgca cgaatctcga
     4141 ttcgggtccg cgtcgaccac tgcgcgagtc cgtaatgaat cgaattctcc acaagcggtt
     4201 gcagaatgag cgtcgggacc agtgaatcgc caaccgaatc atcgacgtcg gttacgatcg
     4261 tgagtcggtc ttcgaacctg atgcgttgaa tcgcagtgta atggtcgagg atgcgcaact
     4321 catcccgcaa cggcacctcc tccgccccgc cagcatccaa tgaaacgcgc atcaactcgc
     4381 ctaaccccga gatcatgcgc tgcgccgccc gcggatcggc gtcgacgagc gccgtgatcg
     4441 cgttgagcgc attgaagaga aagtgcggac gaagttgctg gcgcaggctg tcgagccgcg
     4501 atgacgcgag tcgcatctgc aggacggtct gctcctgcgc ctgcgcggca taccggcgcg
     4561 cgagcgcctc gtgccaccag gttgcgtacg ttgcaatccc gccggcagcc gcgagcagcg
     4621 tgagctttgc acattcgtcc atcaaggcca cggacgccgt tccactggcc gcgatggggt
     4681 cgccgatcgc aaccccgtat acgacgagga acaggaaatc cagcgatgca taggccacga
     4741 ggatgaacac cgcgacaatt gcggcgcgcc gggcagacga gagaatcggt cgcgcagcaa
     4801 gtatcgcgaa atacgcgagc accattggcg acttgaggcc gagcgtcggc gttgcaacga
     4861 tgccataagc gcccatcgtg accgtcactg caacgacgtc cacgatcggg ttcaacacag
     4921 acagccagga cggtagcacg ggacgtgagt aaaagagcca cgcctgaccc acggtccata
     4981 ccagcatcgg tatgagtagc gccgcgttca caatgttgag actgaacggt aaaacaggcg
     5041 catatgcagc ggccgctatc gcaagcacga ccaggacaac acctcgtacg gtattcaact
     5101 tccgctcggc gcgatcccgc tcctcgtcga gtacgctcga tcgcctgtca gcggtcatgt
     5161 gcattcctct aacatatatc cccacacagg tggcgccaga gagcgaacga cggcgcgacg
     5221 gtaacccgcc ggatatgtca tctcaccgtg atcttcatgc atttcaccgc taacgtgact
     5281 ccggacattg acagtctcgt acgtttcggg atgcgaagcc gactgatacc gcgagctaca
     5341 ttgcttggcg cactcacctg tctgtgcgcc tcacaagcct tctctcagtg ccgaccgccg
     5401 cgtgggagca acgaggcgcg cttgctcgct ctttactctg ttcccatagt attcagcagc
     5461 gatcccgcgt cactctcgct tccatccggc gtgttcagac tctccggcga agccgcctac
     5521 ataccaaagg catctgccgc gttgcagcat accagcttct gttatgccgc acgcagccag
     5581 aacaccggcc ttatcagcgt gttcggccga ccccggctcg cggtcggcct cccccacggt
     5641 ttcggtgtgg aagtgagcta tctgccgccg attacggtgg cgaacgccac gccggatctg
     5701 ggtagcgccg ctttctggtt cacacgcggt gtcagctcga gagtgcaatt gaccgcacgg
     5761 gtgcacggca cacttggtat cgtcaaggga cccatcacct gctcgcgcga tgcactgcag
     5821 ctcacggatc cctctgcccc gtgctacgga acgaaaccat ccatcgatga atttcggccg
     5881 aacatggccg gcgccgagat cgtcgcgtcc accaggcccg caacgtcgac acgtttcgga
     5941 ttcttcggcg gcctcggagt caatcagctg gacccgcggt tcagagtggg cttcacaaat
     6001 ctgctgggtc aggtcgacca cacgcggatc gtcgtcgatc tcacgcgcgt caccgcgctt
     6061 gccggcgcga ccatgcagtt gggacatcgc tgcgatgcgt cggctcaggc gtacacgtca
     6121 ttctccgacg cgacgaccgt gcgcgcgacc ctgggctgcc tgttgaatcg atagcgtcag
     6181 gcccggctct tcccggcata ctcgtcccac agcgcagcca tcgccctcgc accgagacgg
     6241 aagttctcga cgctcatcca ctcgtctggc gcgtgcgcgt tctcgcccgg tagtccgaag
     6301 ccaacgagca acaccggagc gtccaggatt cgctgaaagt caccgactac cgggatcgat
     6361 ccaccctccc cgacgatcac cggatcccgg ccgaaggccg ccttcagcgc gcgacgcgcg
     6421 gcatcgaaga tcggaccgct gagatcagca cgccacggac gtccgccgtg caagtagctc
     6481 accttcacag tgactccggc aggcgtgaat ttcttcacgt gcgcctcgaa gagacgggcg
     6541 atcttcgccg gatcctgatt cggcaccaat ctgcagctca ccttcgccat tgccctggcc
     6601 ggaagaaccg tcttcgcacc gtctcccgtg tagccggata gcaatccgtt cacttcgcag
     6661 gttggacgcg tccacaactt ctcgagcgtc gtgaagccct tctcgcctcc gaggctcgtc
     6721 actccgatct cgcgcctgaa ttcggcgtcg gtgtgcgaca ggtcgcgcat cgcggcaagt
     6781 accttatccg gaaacggact cacgtcgtcg tagaaaccat cgatcgcgat gtgtccgttt
     6841 tcatcatgca tcgaggcgat gattcgcgcg agcgcggtcg ccggattgac cacagcaccg
     6901 ccgtacattc cggagtgaag gtcaccggac ggtccctgca catcgatctg gaagtacgac
     6961 agcccgcgca gcgacgacag tatcgacgga atgccctcgg cgaacatcga cgagtccgag
     7021 atcacgactg catctgctgc gagcagatcg cgcttgcgct cgacgaacgc ttccagattc
     7081 tcacttccaa cttcttcctc accttccgca atgacaacaa cgttgcacgg aaggacgcgt
     7141 cgtgtctgca gatgcgcttc gagcgccttg atgtggagaa agagctgtcc cttgtcgtca
     7201 acggatccgc gagcgtagat gcgaccttcg cgcacttccg gctcgaacgg tggtgaagtc
     7261 cagagatcga gcggctcggc gggctgcacg tcgtagtgac cgtatatcag caccgtcggt
     7321 gcatctggcc ccgcaccgcg ccattcgccc accacgaccg ggtgtcccgg cgtttcgtgg
     7381 atcgcggcgc tgaggccagc ctgctccagc gaccgcttca cccattcggc agcggcacga
     7441 gtgtccgcat tatgcgcggg ctgcgcactg acgctgggga tacgcaggaa atcaaaaagc
     7501 tcttcctcga tccgcgactg gtgttgcgtg aggaatgtat cgaggtcgtt cgcgatcttc
     7561 ggcatggatg caatttaacg gcgcaatttg gccccgttta gcctcgcaac gcgggtccgg
     7621 gctatcttac gggatgccga accgcctggc tggcgagacg tcgccctacc tgctccagca
     7681 cgccgacaac cccgtcgact ggtatccctg gggcgaagat gcgctggacc gggcgcgccg
     7741 gctcaaccgg cccattctgc tctcgatcgg ttacgccgcg tgccactggt gccacgtcat
     7801 ggcgcacgaa tcgttcgagg atgccgcgac cgccgagctc atgaacgaca actttgtgtg
     7861 catcaaggtc gatcgcgagg agcgtccgga cgtcgacgcg atctacatgc aggcggttca
     7921 gtccatgacc ggtcacggcg gctggccgat gacggtcttc ctgaatcctg ccggcgagcc
     7981 gttctacggc gggacctact ttccgccggt agaccggcac ggaatgccgt cgttcaggcg
     8041 ggtgctggag gctgtcgccg atacgtacag gaaccatcct gaccgcgtcg ccgccagcgc
     8101 agagtcgatg cggcggatat acgaggcatc ggctgtaagc aatggatacg ccggcagtat
     8161 tgattccgcg tttctggagc aggcgtttca cgcgatcgcg tccggctacg atccacgctt
     8221 cggcggattc gcaggcgcac cgaaatttcc gccgacgatg gtactcgact tcatgttgcg
     8281 ccactggtcc cgcaccggcg aggctgcggc cctcgacatg gccgcagcga cgttcgtgaa
     8341 gatggcgcgc ggcggaatct acgatcagat cggcggcgga ttcgcgcgtt attcggtgga
     8401 tgcagagtgg ctcgttccgc atttcgagaa gatgctgtac gacaacgccc tgctcttccg
     8461 cctcggcgcg cacctttatg aagcgactaa gaatgacgag atccgcgttg ctactgaaaa
     8521 agcaggagat tggctcgcgc gcgagatgac gtcgccggaa ggcggctttt actcgtcact
     8581 ggacgcggat tcggagggcg aggaggggaa attctacgtc tggcaatcgt cggagctgga
     8641 ctcggtgctt ggcgcggact cgcctctcgt caaggcgtac tacggtgtga cgacgggcgg
     8701 taatttcgaa ggaagcaaca tcctgcacgt acccgcagat ccgtccgaga tcgcgcgccg
     8761 tttcgatctc gacgttgcaa cgctatcgac tgccatcgca cgcgcagatc aaagcctcat
     8821 gcaacgccgc tcgcaacgcg ttcggcccgg cctggacgac acgattctcg cagcttggaa
     8881 cggtctggct ctacgcggca tcgtcgaagc cgcgcgcgca ttcgatcgcg cggatttccg
     8941 cgagatggca acacgcaacg ccgaatttct tctcggacgg atggttgtcg acggccgagt
     9001 aatgcgcagt tacaaggacg gcacagcgcg catcaccggt ttcctcgggg atcaggccgc
     9061 ggttgcactc ggcttgctcg cgatgttcga gcagtcactc gacgcgaaat ggctggatgc
     9121 ggcgcgccat ttgacgcgag tgatgctgga cgaattctgg gatgcggata caacgacgtt
     9181 ctacgataca tcgcacaacg cggagaagct cgtgtcgcgt ccgcacgatc ccaccgataa
     9241 tgcgacaccg tccggaacct cgcttgcggt cgacctgctg cttaggctcg
//
LOCUS       DATIMD010000014         2009 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5403, whole genome shotgun sequence.
ACCESSION   DATIMD010000014 DATIMD010000000
VERSION     DATIMD010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5403"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1425
                     /locus_tag="VLI40_00315"
     CDS             <1..1425
                     /locus_tag="VLI40_00315"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HSU95637.1"
                     /translation="AELDALQERATAAARAGRDEAWRAYQSPINVEKDELHALIADAA
                     ANAGDTVATTLGTIAKDLAARSTPLRREIAAAAHEAIVALRDNPSLAAPLLEWKRAQE
                     ALMSARYHAELYSESSESALAVPVEAPNYPDDAPDIDGYMVLNACFDAALKRDPRVIA
                     FGEDVGKLGDVNQGFVDLQARYGELRVGDTGIRECTIIGQAIGMAMRGLRPIAEIQYL
                     DYLLYALQVMSDDLATLRYRTRGGQKAPVIVRTRGHRLVGVWHSGSPMAMMLGALRGM
                     YILVPRDMTRAAGFYNTLLQGDDPAIVVEVLNAYRVKEKLPSNIGTFTVPLGVPEILR
                     EGSDVTVVTYGACCKIALDAARLLQDNVGVSVEVIDVQSLLPFDINGVIVESLKKTNK
                     VLFLDEDVPGGATAYMMQEVLERQGGFYWLDAAPRTLAASAHRAAYGRDGDYWSKPNV
                     ETVFDAVYEIVRETDVARFPALGL"
     gene            complement(1465..>2009)
                     /gene="rodA"
                     /locus_tag="VLI40_00320"
     CDS             complement(1465..>2009)
                     /gene="rodA"
                     /locus_tag="VLI40_00320"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HSU95638.1"
                     /translation="GVIAPILWEKLAPYQQNRLKVFLDPSADPRASGYHVLQSKIAIG
                     SGGLFGNGFTLGTQKRSGFLPEQHTDFIFAVVGEELGFIGVALALALFLALLLRATRI
                     ASRANDSFGSLAAFGLMSCWLVHVVVNIGMTLNLMPITGIPLPFFSYGGSFMLASWLG
                     VGVLLRISGEGRGHAGALLS"
BASE COUNT          411 a          612 c          646 g          340 t
ORIGIN      
        1 gcagagttgg acgcattgca ggagcgcgcg acggccgcgg cacgcgcggg gcgggatgag
       61 gcatggcgcg cataccagtc accgatcaac gtggagaagg acgagctcca cgcactgatc
      121 gcggatgccg cggccaacgc cggtgacacg gtcgcgacga cgctcggcac gatcgcgaag
      181 gaccttgcag ctcgctcgac cccgctgcgg cgcgagatcg cggcggcggc gcatgaagcg
      241 atcgtcgcat tgcgagacaa cccgtcgctc gccgcgccgc tgctggaatg gaagcgtgcg
      301 caggaagcgc tgatgagcgc tcgctaccat gcagagctgt attcggaatc gagcgaatcc
      361 gcactggccg tgccggtcga agcgccgaac tatccggacg acgcgcctga tatcgacggc
      421 tacatggtgc tcaacgcctg cttcgatgca gcactcaagc gcgaccctcg cgtgattgcg
      481 tttggcgagg acgttggcaa gctgggcgac gtgaatcagg gcttcgtgga cctgcaggct
      541 cgttacggcg agctgcgtgt gggcgacacc ggaatccgcg agtgcacgat aatcggccag
      601 gcgataggga tggcgatgcg cggtctgcgc ccgatcgcgg agatacagta cctcgactat
      661 ctgctgtacg cgctacaggt gatgtcggac gatctggcga cgctgcgcta ccgtacgcgc
      721 ggtggccaga aagctcccgt catcgtacgc acgcgcggac atcgtctcgt aggcgtctgg
      781 cactccggat cgccgatggc gatgatgctt ggtgcgcttc gcggcatgta cattctcgtt
      841 ccgcgcgaca tgacacgcgc tgccggcttc tacaacacgc tgctgcaggg agacgatccg
      901 gcaatcgtag tcgaagtgct caacgcatac cgggtgaagg aaaaacttcc gtccaatatc
      961 ggaacgttca cggttccact cggcgtgccg gaaatattgc gcgaaggttc ggacgtaact
     1021 gtcgtgacct acggtgcgtg ctgcaagatc gcgctggacg ccgcgcgtct gctccaggac
     1081 aacgtgggcg tgagcgtgga agtgatcgac gtgcaatcgc tgcttccgtt cgacatcaac
     1141 ggcgtgatcg tcgagtcact gaagaagacc aacaaggtgc tcttcctgga cgaggacgtt
     1201 ccaggcggcg cgaccgcgta catgatgcag gaagttctgg agcgtcaggg cggcttctac
     1261 tggctggacg ccgcgccgcg cacactggcg gcgtcagccc atcgcgccgc atacgggcgt
     1321 gatggcgact actggtccaa gccgaacgtc gagacggttt tcgacgcggt atacgaaatc
     1381 gtgcgagaga cggatgtggc gaggtttcca gcactggggc tgtgattgca acgccgacaa
     1441 tgacgacgtt cggcaatcat cgcgctacga cagcagcgcc cccgcgtgtc ccctgccctc
     1501 gccggatatc cgcagcaaca ctccaacgcc gagccagctc gcaagcatga atgagccacc
     1561 gtagctgaag aacggcagtg ggattccggt gatcggcatc aggttgagcg tcatgccgat
     1621 gttcaccacc acgtgcacca accagcacga catcaacccg aacgcggcca ggctgccgaa
     1681 cgaatcgttc gcgcgcgacg cgatccgtgt ggcgcgaagc aacagtgcga gaaagagcgc
     1741 gagcgcaagc gcaactccga tgaatcccag ctcctcgcct acaaccgcga aaatgaagtc
     1801 ggtgtgctgc tcaggtaaaa acccgcttcg cttctgcgtg ccgagcgtga acccgttacc
     1861 gaacagtccg cccgagccga ttgcaatctt cgattgcaga acgtgataac ccgaagcgcg
     1921 cgggtcggcc gacggatcca ggaaaacctt gagccggttc tgttgatacg gcgcaagctt
     1981 ctcccagagt atgggcgcga ttacacctg
//
LOCUS       DATIMD010000015         4537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3759879, whole genome shotgun sequence.
ACCESSION   DATIMD010000015 DATIMD010000000
VERSION     DATIMD010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4537
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3759879"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(79..1362)
                     /locus_tag="VLI40_00325"
     CDS             complement(79..1362)
                     /locus_tag="VLI40_00325"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSU95639.1"
                     /translation="MKAWAFLSIALLCTAVACNNLLDVKSPDAINATSLDNPLIAEQT
                     VNASIGDFDCALSSYVVAAGLMSGELTDATLTASRWSYDRRDIDPNESAYSTNDCLES
                     DLGTYTPISTARFTADRILALLEGWTDDSVPNRSFLISEAASFGGYTRILLGEGFCNA
                     AIAGGPSLTSAQVFALATGKFDTAVTAAQAALDAAVSAHDTTAAGQDSSALYLALVGR
                     ARSSLDAGQNAQAIADASLVPPGFVYNATYDAGTDNRTNHVYTENNADQTVSVAPPYE
                     NLNDPRVPVTNKNKTASDEKTPLFTQGKYADGSAPIPIASYVEAQLILAEATGGSGAI
                     TILNNLRSSAGLGALASSSDPAVITADIASERARWLWLQGQHLYDVRRLGLPLVPAAG
                     SSYSIYYHKGGSYGSETCMPIPAVETNNNPNAGGG"
     gene            complement(1435..4383)
                     /locus_tag="VLI40_00330"
     CDS             complement(1435..4383)
                     /locus_tag="VLI40_00330"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSU95640.1"
                     /translation="MTAALCSAVSATAFAQSASISGTVTDQASAPIVAAQVSIAGTRL
                     ATATDANGRFRLTGMTDPVGTPVSLVARRIGYSSSTMQVHVGDENVAIKLTQAAISLN
                     EVVVTGTPGSTQRRALGVDVAQIDASTLVRKAPITDVQSMLNGRAPGVTLLANSGVVG
                     AGSTVRIRGVSSFSLTNQPLIYIDGVRVDNSQSTGVQNQSFGAATTSRWNDFNPDDIE
                     SIEIVKGPAATTLYGTEAANGVIQIITKKGAIGKTTWDFSTRQGANWFHNPQGRLWTN
                     FDTDNDSLSPTFGDTLSINYTQLEKNLAAAGEGKIFQTGYRQSYNIGLGGGSPLLRYH
                     VSGGYENNNGVESSNNDHLYTGRASLGVFPNDKLDIAVDAGFTVNKTNLSAEAGYGGT
                     TWTTYFADPANIGTDHLGFLSGLPSSYHEQYQLFQAVNRFTGSVAVNHRPISWFNQRL
                     VLGIDNGYEDGEELSGVHHDLSNFFGTDADSGFKNVVTRDNRVFTASYVGNLVLPVTS
                     SIRSTTSLGGDVIKRDGKYVNGSGSDFPAPGLSSLSSTTAARTSTESDTLDNTVGVFA
                     QEEFAWRDRVFITGGVRLDNNSSFGAKFRNVYYPKVSGAWVLSEEPFFHIPTVTTLKL
                     RAAYGESGQAPLPYSSDSTFCPAAGPFGAAFTPCHYGNPNLGPERGYETELGFDAGLF
                     HDRAGIEFTYYFGGTKDAILEEQIAPSLGYPGTKLVNAGALTKHGFEVALHGTPYQTK
                     NTEWTLGLNLSTADNKVTNLNGAAYLQASTNVRHVVGFPVGAWWVKKVTGSTLNPDGS
                     VTDVTCDDGTGANVSCANAPVLFAGRTLPNFEGSATSTLRFLKNFQFFVMVDSKRGYK
                     KLDGNARVRCHIFDECQSNWYPQGFDPALLGAETSSSFYSDIINDASFVKLREVSLSY
                     TLPESWASTFRASGATISVAGRNLHTWTKYPGLDPEGSFQGGSRGFGQWEQDVTPQLM
                     QFVTTIHLTF"
BASE COUNT          828 a         1350 c         1455 g          904 t
ORIGIN      
        1 tcggtgtagc acgcgaaacg gggaggcgca gatcgcgcct ccccgttttt cgtcaacgca
       61 ggcgagcaat ttcgacgatc agcccccgcc cgcattcgga ttgttgttcg tctccaccgc
      121 gggaatcggc atgcaggttt cgctgccgta ggatccgccc ttgtgataat agatcgagta
      181 gctcgagcca gctgcaggta cgagcggcag cccgagccgg cgaacatcat acagatgctg
      241 gccctgcagc cacagccacc gcgcacgttc ggatgcgatg tctgccgtga tgacagccgg
      301 atcgctggag gaagcgagtg cgccaagacc agcggatgag cggagattgt tgagaatcgt
      361 gatcgccccc gagccgcccg tcgcctcggc caggatcagc tgcgcctcga cgtagctcgc
      421 gatcgggatt ggcgccgagc catccgcata cttgccctgc gtgaagagcg gcgtcttctc
      481 gtccgatgct gttttgttct tgttcgtcac gggaacgcgc gggtcgttga gattttcgta
      541 aggaggtgcg accgataccg tctgatccgc attgttctcg gtgtagacgt gattggttcg
      601 attgtcggtg ccggcgtcgt aggtcgcatt gtacacaaaa ccggggggca ccagcgaagc
      661 gtccgcaatc gcctgcgcat tctgccccgc gtccagcgag gagcgtgccc tgccgaccaa
      721 cgcgagatag agcgcgctcg agtcctgccc tgcggccgtg gtatcgtggg cactgaccgc
      781 agcatcgagc gccgcctgtg ccgcggtgac cgcagtgtcg aacttgcccg tcgcaagcgc
      841 gaatacctgc gccgaggtca gagatggacc gccagcgatt gccgcgttgc agaagccctc
      901 gccgagcaga atgcgagtat agccgccgaa ggaagcagcc tccgagatca ggaatgagcg
      961 attgggtacc gaatcgtccg tccagccttc gagcaacgca agaatgcggt ccgcggtgaa
     1021 ccgagcggtg gagatcggcg tgtaagttcc aagatccgat tccagacagt cgttcgtcga
     1081 atacgcggat tcgtttggat cgatgtcgcg gcgatcgtat gaccaccgcg atgcggtgag
     1141 tgtagcatcg gtgagctcgc cgctcatcag ccccgccgca acgacgtagg acgacagtgc
     1201 gcagtcgaaa tctccgatgc tcgcgttcac cgtttgttcc gcgatgagcg gattgtccag
     1261 cgaagtcgcg ttgatggcgt cgggtgattt cacgtcgagc aggttgttgc acgcgaccgc
     1321 cgtgcagagc aacgcgatcg acaggaatgc ccaagccttc atgcgcgagg gtcgagccga
     1381 atgtttctgc atgtgtgttg gcctgtgatt gtcgggtgac atcgtgggat tcctctaaaa
     1441 ggtcagatga atggtcgtga cgaactgcat gagctgcgga gtcacgtcct gctcccactg
     1501 tccgaatccg cgcgagcctc cctggaacga tccttccgga tcgagcccgg gatacttcgt
     1561 ccacgtgtgc agattgcgtc cggcaacgga gatcgtcgcg cctgatgcgc ggaaggtcga
     1621 tgcccagctt tccggaagcg tgtacgaaag cgagacctcg cgaagcttca cgaagctcgc
     1681 atcgttgatg atgtcgctgt agaacgagct gctggtctcc gcgccgagca atgcgggatc
     1741 gaagccctgc gggtaccagt tggactggca ctcgtcgaag atgtgacagc gaacgcgtgc
     1801 gttaccatcg agcttcttgt aaccccgctt gctgtcgacc atgacgaaaa actggaaatt
     1861 cttgaggaac cgcagggtcg atgtggccga tccctcgaag ttcggaaggg tccgtccggc
     1921 gaatagcacc ggcgcattcg cgcaactgac gttcgcgccg gtcccgtcat cgcacgtgac
     1981 gtccgtcacg ctgccgtcgg ggttgagcgt ggagcccgtc accttcttta cccaccacgc
     2041 gcccacggga aacccgacga cgtgtcgtac gttcgtggac gcctgcaggt aagccgcgcc
     2101 attcagattc gtcaccttgt tgtcggccgt cgagaggttc agcccgaggg tccactcggt
     2161 gttcttggtc tgatagggtg tcccgtgcag cgcaacctcg aacccgtgtt tggtgagcgc
     2221 gcccgcattg acgagcttcg tacccggata gccgagtgaa ggagcgattt gctcctcgag
     2281 gatcgcgtcc ttcgtaccac cgaaatagta cgtgaactcg atcccggcac gatcgtgaaa
     2341 cagccctgca tcgaagccca gctcggtctc gtacccgcgc tcggggccga gattcggatt
     2401 tccgtaatgg cacggagtga aggcggctcc gaacggaccg gcggcggggc agaacgtgct
     2461 gtcggacgaa tacggaagcg gggcctgccc ggactcgccg tacgcggcgc gcaacttcag
     2521 cgtcgtcacg gtgggaatat ggaagaaggg ctcctcactc agcacccacg cgccactcac
     2581 cttcggataa tacacgttcc tgaacttcgc tccgaaggag ctgttgttgt cgaggcgcac
     2641 gccgccggtt atgaacacgc ggtcgcgcca cgcaaattct tcctgggcga acaccccgac
     2701 cgtgttgtcg agcgtgtcgc tttcggtgct ggtacgggcc gccgtggtcg acgatagcga
     2761 cgacaagccc ggggcgggaa aatcggaccc agacccgttc acatactttc catcgcgctt
     2821 gatgacgtcg ccgcccaggg atgtggtcga cctgatgctg ctcgtaacgg gcagcacgag
     2881 gttaccgacg taactcgcgg tgaacacacg gttgtcccgc gtcaccacgt tcttgaaacc
     2941 cgagtctgca tcagtgccga agaaattgga cagatcgtga tggacgccgc tcagctcttc
     3001 accgtcctcg tatccattgt cgattccgag cacgagccgc tgattgaacc acgagatcgg
     3061 gcgatggttc accgcaacgc taccggtgaa tctgttcacc gcctgaaaga gctgatactg
     3121 ctcgtgatag gacgagggca gcccggagag gaagccgaga tgatcggttc ctatgttggc
     3181 gggatctgcg aaatacgtcg tccaggtggt gccgccatat cctgcttcgg cggacaggtt
     3241 ggttttgttg acggtaaatc cggcatccac ggcgatgtcg agcttgtcgt tcgggaagac
     3301 cccgaggctg gcgcgtcccg tgtacagatg gtcgttgttc gacgactcga ctccgttgtt
     3361 gttctcgtac cctccagaga cgtggtagcg cagcaatggt gagccaccgc ccaggccgat
     3421 gttgtagctc tggcgataac ccgtctggaa aatcttacct tcacccgcgg ccgcgagatt
     3481 cttctcgagc tgagtgtagt tgatgctgag ggtgtcgccg aatgtggggc tgaggctgtc
     3541 gttgtccgta tcgaagttcg tccacaaccg tccctgcgga ttgtggaacc agttcgcgcc
     3601 ctggcgcgtg ctgaaatccc acgtcgtctt tccgatcgcg cccttcttgg tgatgatctg
     3661 gatgacgccg ttggcggcct cggttccgta gagcgtcgtc gcagccggac ccttcacgat
     3721 ctcgatgctc tcgatgtcat cgggattgaa gtcgttccag cgcgacgttg tcgcggcacc
     3781 gaagctctgg ttctgcacgc ccgtcgattg cgagttgtcg acgcgcaccc cgtcgatgta
     3841 gatcagcggc tgattcgtga gcgaaaagct cgagacgccg cggatacgca ccgtggagcc
     3901 ggcaccgacg acgcctgagt tcgcgaggag cgtcacgccg ggcgctcgtc cgttcagcat
     3961 cgactgcaca tcggtgatcg gcgccttccg gacgagagtc gacgcatcga tctgcgccac
     4021 gtccacgccc agcgcgcgcc gttgggtgct gcccggcgtg cccgtgacga cgacttcgtt
     4081 gagggagatc gccgcctgcg tcagcttgat ggcgacattc tcatcaccga cgtgcacctg
     4141 catggtcgac gacgagtagc cgatgcggcg agcgacgagg ctcaccgggg ttccgacagg
     4201 atccgtcatg ccggtgaggc gaaagcggcc gttggcatcg gtggccgtag ccagccgcgt
     4261 tccggcgatc gagacctggg ccgcaacgat cggcgcgctc gcctgatctg tgacggtgcc
     4321 ggaaatggac gcgctttgcg cgaatgcggt ggcggagact gcggagcaga gcgccgctgt
     4381 catcgcgagc gtcgagagcc atcgacgtcg ggatggttgg cgtgcgcgcg tgctcgattc
     4441 tgactggtgg cgcaatgcac accgggggag tgtcatgagc cgtcctccga ggggggaaga
     4501 tgatgcggat cttcgtcgtg aagatcgttg ccgcgga
//
LOCUS       DATIMD010000016         5070 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_583668, whole genome shotgun sequence.
ACCESSION   DATIMD010000016 DATIMD010000000
VERSION     DATIMD010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5070
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_583668"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..930)
                     /locus_tag="VLI40_00335"
     CDS             complement(<1..930)
                     /locus_tag="VLI40_00335"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU95641.1"
                     /translation="MTPVTASVAQTSDQAVPPAARTFFDSLTAARAADSASPAPQSMV
                     SQGEAPQKPIGAPTVLQLDPAHNLTWLEIVRDSTLASLINTAVNNNRDLRVAQARIRE
                     YRALRGAAVGPFFPQITANGAASRNKIALAGGAPIKYDAISATANVAWELDFWGRIRR
                     GAQAANFDLLSQQEDARATELTLVSDVATEYLQLRELDESMRIAEATRAAGQAVLELA
                     RSRFAQGQISELDVRQFEAQVADPAARLAQFALQRRQQENALSLLLGQAPGSIPRGGP
                     LQDVIQAVTVPDSLPGALIARRPDVMRAQRDMQA"
     gene            complement(1026..4247)
                     /locus_tag="VLI40_00340"
     CDS             complement(1026..4247)
                     /locus_tag="VLI40_00340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0042908 - xenobiotic transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HSU95642.1"
                     /translation="MSAVKPDPAESAQDEKTPQYFFVQRPVLAGVISIVIALLGVLAM
                     LSLPVNRYPQITPPSVRVTAVYPGASAEDVANSVAAPIEQQLSGLDGLLYYKSSNASD
                     GTMNLALTFDISRDQDLAAVDVQNAINLALPQLPASVRQLGVTITKANPDILLVATLT
                     SKDPRYDASYLSNYSKLYLEDEIKRVPGVGSATTFGSLDFAMLLSLNPEKMAQLGITV
                     DDVAAAVQAQNSTKPAGRLGREPAPSGTELTLPVTTAGRLTTPAEFASIIVRARPDGS
                     IVHLGDISNVHLGSQGYDAGGRLNGSPTALMVVYARPGANNLDVKNAVAARLKELSKN
                     MPAGVEAKIPFDTTPFITESIKEVVITLAEAMVLVTLVVFIFLQSWRATLIPVLAVPV
                     SIIGTFLGLQFLGFTINTLTLFAMVLAIGIVVDDAIVVIENVERIMAAEHVSARVAAN
                     KAMHQVSGALIAIVLVLCSVFIPVALVGGITGTMYKQFAITIVISVVLSGFVALTLTP
                     ALCGVLLKKPPEETDNRFYNWFNHGFGNMTRRYVGAAGRIIDRPSLWLGVFVALVLGL
                     VVLWKVVPGSFLPSEDKGYFAIAVQLPDAASLQRTTATVKQIEDMVRKEPAVANVVVL
                     VGLDLLSQSTQTNAATMFVSLKPWAERGSSESVDAVLQRVNGQLFGMKNAIAFGFNLP
                     EIPGLGTTAGLELNLQQRTGTDYAAFANSVRSFVSDLQKVPSLQNPNVNIRTDVPQVY
                     VHVDEAAAESRGVTSASIFSTLQTMLSNLYINDFNLYGRTYRVQAEAQTQFRQRPEDI
                     GRFYVRSTTGEMVPLSALTTTEMRGAPGLLTRFNGFPSATITAAVAPGHSSGEGLDAV
                     EKLVADKYASQGIGYAYSGESYQERASAGQGGLVLALALVLVFLVLAAQYESWSIPFA
                     VILALPFGVLGAYLGIWARGLSSDIYFQVALLAVLGLAAKNAILIVEFATELRRSGMS
                     IRDAALEAARERFRPILMTSFAFILGVAPLVIAGGAGAASRHSLGTGVFAGMLVATTV
                     GVFFIPLFFAVIEKRIHRQELASGHDTPPIGGAAASAHSVHKS"
     gene            complement(4244..>5070)
                     /locus_tag="VLI40_00345"
     CDS             complement(4244..>5070)
                     /locus_tag="VLI40_00345"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSU95643.1"
                     /translation="GNAVAKQDVDNAEAQVKSASAAVDDARGSVDAAQKNLSETTVRA
                     QIAGRIERTLLDVGARVTGPADLLTTIDVLDPIYVTFRPSTDQQAQWRSDPVYARAIA
                     PGGSARVQVTLPDGSLFPTEGRIGYIDPVVDPQTGTQEYRAQFANPRRIMLPGQFVHV
                     ALRGLSRTNAIVIPQRAVLQQMGRQSVYVVGPDNKVAAREVKATTWTGNDWLIESGLA
                     AGDRVVVDGVQKIGPGAPVQPTPYVDSASTARADSGSKPAGARTATPSAPVKDSAR"
BASE COUNT          945 a         1629 c         1571 g          925 t
ORIGIN      
        1 tgcctgcatg tcgcgctggg cgcgcatcac atccggacgt cgcgcgatca gcgcgcccgg
       61 aagcgaatcg ggaaccgtga ccgcctggat cacgtcctgc aatgggccac cgcgcggaat
      121 cgatcccggc gcttgaccca gcagcagcga cagcgcgttc tcctgctgcc gcctctgcaa
      181 tgcgaattgc gcgagtcgcg cggccggatc ggcaacttgc gcctcgaact ggcgcacgtc
      241 cagctcggag atctgaccct gcgcgaatct gctgcgcgca agctcgagta ccgcctgccc
      301 cgctgctctc gtcgcctcgg cgatgcgcat gctctcgtcg agctcacgca actgcagata
      361 ctccgttgcc acgtcgctca cgagcgtcag ctcggtggcg cgcgcgtctt cctgctggct
      421 caggagatcg aagttcgcag cctgggcgcc gcggcggatc ctgccccaga agtccagctc
      481 ccatgcgaca ttggcggtcg cgctgatcgc atcgtacttg atcggtgcgc cgccggcgag
      541 cgcgatcttg ttgcggctcg ccgcgccatt cgccgttatc tggggaaaga aggggccgac
      601 cgcagcaccg cgaagtgcgc ggtactcgcg tatgcgcgcc tgagcgacgc gcagatcgcg
      661 gttgttgttg accgcggtat tgatgagtga cgcgagtgtg ctgtcgcgca caatctcgag
      721 ccacgtgaga ttgtgcgctg gatcgagctg caacacagtc ggtgcgccga tcggcttctg
      781 cggcgcctcg ccctgactca ccatcgattg cggcgcggga gaagccgagt cggccgctct
      841 ggcggcggta agagaatcga aaaacgtgcg tgccgcaggc ggcacggcct gatcgctggt
      901 ctgcgcgacc gaagccgtta ccggagtcac cgccgtcgat ggacccacgg cgcaggctgc
      961 gagcaggcaa acagccgtaa gaactgcaaa cgcaccaggc gtgcgcggta tttgattgat
     1021 tgacgtcacg acttgtgtac cgaatgggcg gacgcggcgg caccgccaat tggcggcgtg
     1081 tcgtgcccgc tcgcgagctc ctgccggtga atccgcttct cgatcacggc aaagaacaga
     1141 ggaatgaaga agactccaac cgtcgtagcg acgagcattc cggcaaacac gccggtaccg
     1201 agcgaatgtc tgctcgcagc gccggcaccg cccgcgatca caagcggggc gacaccaagg
     1261 atgaatgcga acgacgtcat gagaattgga cggaatcgct cacgcgccgc ctccagcgcc
     1321 gcatcgcgaa tggacatgcc ggatcgcctg agctctgtcg cgaattcgac gatgaggatc
     1381 gcgttcttgg ccgcgagtcc gagcactgcc agaagcgcaa cctgaaagta gatgtcgctc
     1441 gagagcccgc gcgcccatat gccgaggtat gcaccgagca caccgaacgg cagcgcgaga
     1501 attaccgcga atggaatcga ccagctctcg tactgcgccg cgagcaccag gaacacaagc
     1561 acgagcgcga gcgcgagcac cagtccaccc tgccccgccg acgcgcgctc ctggtacgat
     1621 tcaccgctat acgcatagcc gatcccctgc gacgcatact tgtccgcgac gagcttctcg
     1681 acggcgtcga gcccttcacc cgagctgtga cccggcgcca ccgccgcggt aatggtggct
     1741 gatggaaatc cattgaatcg cgtgagcagt ccgggagcgc cgcgcatctc cgttgtcgta
     1801 agcgctgaca aggggaccat ctcgccagta gtgctgcgca cgtagaaccg cccgatgtct
     1861 tcgggccgtt gccggaactg cgtctgcgct tcggcctgga cacgatacgt gcggccgtag
     1921 aggttgaagt cgttgatgta aagattggac agcatcgtct gcaatgtcga gaagatgctg
     1981 gcactggtca cgccgcgtga ttcagcggcc gcctcgtcga cgtgcacgta cacctgcggc
     2041 acatcggtgc ggatgttgac gttggggttc tgcagcgacg ggaccttctg cagatccgac
     2101 acgaagctcc gcacgctgtt cgcgaacgcg gcgtaatccg ttccggtacg ctgctgcaga
     2161 ttcaactcca gtcctgcagt cgtacccagt cccggaatct ccggcaggtt gaagccgaac
     2221 gcgatcgcgt tcttcattcc gaacagctgg ccgttcacgc gttgcagaac cgcgtcaaca
     2281 ctctcggacg agccccgctc ggcccacggc ttgagactta cgaacatcgt cgctgcattc
     2341 gtctgcgtcg attgtgacag aagatcgagt ccaacgagca ccacgacatt cgcgacggcg
     2401 ggctccttcc tgaccatgtc ctcgatctgc ttgacggtcg cagtcgtacg ctggagcgac
     2461 gcggcgtcag gcaactgcac ggcgatcgcg aaatagccct tgtcctcgct cggcaggaag
     2521 ctgcccggga ccactttcca gagcacgacg agccccagca cgagcgcgac gaacacgccc
     2581 agccacagac tcggccggtc gatgatgcgg ccagccgcgc ctacgtagcg cctcgtcatg
     2641 ttgccgaaac cgtgattgaa ccagttgtag aagcggttgt cggtttcttc gggtggcttc
     2701 ttgagcagca cgccgcacag tgccggtgtc agtgtcagcg caacgaaacc ggatagcacg
     2761 acagagatca cgatggtgat cgcgaactgc ttgtacatcg taccggtgat accgcccacg
     2821 agcgcaacgg gaatgaacac ggagcacagt acgagcacga tcgcgatcag cgcaccgctg
     2881 acctgatgca ttgccttgtt agcggcgact cgcgccgaga catgctcggc cgccattatt
     2941 cgctcgacgt tctcgatcac gacgatcgcg tcgtccacca cgattccgat cgcgagcacc
     3001 atcgcgaaca gcgtcagcgt gttgatcgtg aagcccagga actgcaatcc gagaaaggtt
     3061 ccgatgatac tcaccggcac cgccagcacg ggaatcagcg tcgcacgcca gctctggaga
     3121 aagatgaaca ccaccagcgt cacgagtacc attgcctcgg cgagggtgat caccacttcc
     3181 ttgatggatt cggtaatgaa tggtgtcgtg tcgaacggga tcttcgcctc gacgccagca
     3241 ggcatgtttt tcgagagttc cttcaatcgc gcggcgaccg cgttcttcac atccagattg
     3301 tttgcgccgg gacgcgcata aacgaccatg agcgcagttg gcgagccgtt gagccgtcca
     3361 cccgcgtcgt aaccctgcga tccgaggtgc acgttggaga tgtcgccaag gtgcacgatc
     3421 gatccgtcgg ggcgagcgcg tactatgatg ctcgcgaatt ccgcaggagt cgtgagacgt
     3481 ccggcggtcg tcacgggtaa tgtgagctcc gttccggatg gtgccggctc cctgcccaga
     3541 cgccctgcgg gcttggtcga gttctgagcc tggaccgccg ccgctacgtc gtcgacagtg
     3601 ataccgagct gcgccatctt ctcgggattc aggctcagca acatcgcgaa atccagactg
     3661 ccgaacgtcg tcgccgatcc aacgccgggc acgcgcttga tctcgtcttc gaggtaaagc
     3721 ttggagtaat tactcaggta cgacgcgtcg tagcgcggat ccttggacgt gagcgtcgcg
     3781 accaggagaa tgtcaggatt cgccttggtg atcgtgacgc cgagttgccg cacggaagcc
     3841 ggcaactgcg gcagtgcgag gttgatcgcg ttctgcacat cgaccgccgc gagatcctga
     3901 tctcgcgaga tgtcgaaagt cagcgcgagg ttcatcgttc cgtcgcttgc gttcgacgac
     3961 ttgtagtaca gcagaccatc gaggcccgac agctgttgct cgatcggagc agcgacggag
     4021 ttcgcgacgt cctctgcact cgcgccggga tagaccgcag ttacgcgaac gcttggcggt
     4081 gtgatctgcg gataacggtt cactggcagc gacagcatgg cgagaacgcc gagcagcgca
     4141 atgacgatcg atattacgcc ggcgagaacc ggacgctgta caaaaaaata ctgcggggtc
     4201 ttttcgtcct gcgcggattc cgcaggatcg ggcttgacag cgctcatcgc gctgagtcct
     4261 tgaccggtgc gctcggtgtc gctgtccttg ctccagctgg cttcgatccc gaatccgccc
     4321 tggctgtgct ggcggagtcg acatagggag tcggctgcac cggcgcgccc gggccgatct
     4381 tctgcacgcc atccactacg acacgatcgc cagcggcgag gccgctctcg atcaaccagt
     4441 cgttaccagt ccacgtcgtc gccttcactt cgcgcgccgc gaccttgttg tccggcccga
     4501 cgacatacac cgactgccgt cccatctgtt gcagcaccgc gcgctgcggg atcacgatgg
     4561 cattcgtgcg cgacagcccg cgtagcgcga cgtggacgaa ctggcctgga agcatgatgc
     4621 gtcgcggatt ggcgaactgc gcccggtact cctgcgttcc cgtctgcgga tcgactacgg
     4681 gatcgatgta tccgatgcgt ccttccgttg gaaacagact tccatcaggc agcgtcacct
     4741 gaacgcgagc agatccaccg ggcgcgatcg cgcgagcgta aaccggatcg ctgcgccact
     4801 gcgcctgctg gtcggtcgac ggcctgaacg tcacgtagat cggatccagt acgtcgatcg
     4861 tggtgaggag gtcggcaggg cccgtcacgc gtgcaccgac gtcgagcagc gtacgctcga
     4921 tacgacccgc gatctgcgcc cgaaccgtcg tctcgctcag gttcttctgg gctgcgtcga
     4981 cgctgccgcg cgcgtcgtcc accgcggcgc tcgcggattt cacctgcgct tcggcgttgt
     5041 ccacgtcctg cttggcgacg gcgttgccgg
//
LOCUS       DATIMD010000017         2919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_6022, whole genome shotgun sequence.
ACCESSION   DATIMD010000017 DATIMD010000000
VERSION     DATIMD010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6022"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..688
                     /locus_tag="VLI40_00350"
     CDS             <1..688
                     /locus_tag="VLI40_00350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95644.1"
                     /translation="IGNTIHGVQTHPSGHWRTGFTYGAPVVTPLFLMALLIPFGVWRA
                     EDPSRRAYHWSMPVARGPHTIAKVFAGWVWLMIAAAVYLLFVIALALIVPGITGEVSR
                     LGDAGAWEWIAAFTAPTLGYLLTSIAVIGSDHAWRWIGGLFLGYWVLIGSLSAFGMQD
                     AAQTVRAITAGAYGLNAAMIGAARDAASASSGHMVVRELSMSNWLVAMPLWIIASAIA
                     VTIVSYRHRE"
     gene            complement(700..1092)
                     /locus_tag="VLI40_00355"
     CDS             complement(700..1092)
                     /locus_tag="VLI40_00355"
                     /inference="COORDINATES: protein motif:HMM:NF022681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3037 domain-containing protein"
                     /protein_id="HSU95645.1"
                     /translation="MKTPARTIPYNFAVLRVVPHVHIGSAVPVGVILHAPTVQFIGMR
                     VLTERAALSARAPHVDVELLMRYLTTYRAVCNSEGEGGSLAFGSPSERFHWLTAPRSD
                     VIQSGPVHEGVTDDVDAELDTLFTELVV"
     gene            complement(1100..1942)
                     /locus_tag="VLI40_00360"
     CDS             complement(1100..1942)
                     /locus_tag="VLI40_00360"
                     /inference="COORDINATES: protein motif:HMM:NF042851.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA family kinase"
                     /protein_id="HSU95646.1"
                     /translation="MPSQNSLPTLAARRYVQPLREGGSLPAVVDTDDGMFVVKFRGAG
                     QGAKALVAELIGGMVAQTLGLPVPSLALVHVSETFGRSEPDPEISEVLRKSHGINVGL
                     RYLDGAFNFDATAAGELIPVPLATRIVWLDAFLTNPDRTARNTNLMIWERSPWLIDHG
                     AALYAHHDWPSVDTARMQSPFPLIRDHVLLTHAAEASTVDTEMAAMLGGDVLREIIAR
                     IPDGLLEDDAYRADGDTPATARARYVGYLTTRLAAPRAFAETASRMRAERLTDVPRQR
                     TARR"
     gene            complement(1999..>2919)
                     /locus_tag="VLI40_00365"
     CDS             complement(1999..>2919)
                     /locus_tag="VLI40_00365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HSU95647.1"
                     /translation="INAPSLDAWSTAAALVAVTSTLEVMVAVRPSFHPPALLAKQAAT
                     IDRISNGRLSLNVVSAWWKDEARRYGVAFDEHDDRYARTSEWLDIVSSAWSEEKLDYS
                     GKYYTVDELILEPKPVASTERPRPTIYAGGESDAAKRMITRQCDAYVMHGDPPERIAP
                     KIADMRRLRDQASEALGVELPPLQFGVAGYAIVRDSESEVRDEITRITTVSPDSPGYG
                     NYADWIANTKLEQRVSIEDYSVSNRGLRAGLTGTPEQVAARVEEFADAGVDLLLLQCS
                     PQLEEMERFSAQVITSGASGAAHRSSGVAA"
BASE COUNT          544 a          902 c          893 g          580 t
ORIGIN      
        1 aatcggcaac acgatccacg gcgtacagac tcatccgtct ggacattggc gtacgggctt
       61 cacgtatggt gcgccggtcg tgacgccttt atttctgatg gcgctgctca ttccgttcgg
      121 agtctggcgg gcagaggatc catcacgccg cgcgtatcac tggtcaatgc cggtggcaag
      181 gggtccgcac accatcgcga aagtatttgc gggctgggta tggctgatga tcgcagcggc
      241 ggtatatctc ctcttcgtca ttgcactcgc cctgatcgtt ccaggaatca caggagaagt
      301 gtccaggctc ggagatgctg gtgcgtggga atggatcgca gcgtttactg ctccgacact
      361 cggatatctg ctcacatcga tcgccgtcat tggcagcgac cacgcgtggc ggtggatcgg
      421 cggcctgttt ctcggttact gggttctgat tggttctcta agcgcattcg gcatgcagga
      481 cgccgctcaa acggtacggg cgatcactgc cggagcctac ggtctgaacg ccgcaatgat
      541 cggtgccgcg cgtgacgcgg cgagtgcgtc gtccggacac atggtggtcc gtgagttgag
      601 catgagcaac tggttggttg cgatgccgct gtggatcatt gcctcagcca tcgcggtgac
      661 gatcgtgtcg taccggcacc gtgagtaatc gcgacgtagc tacacaacca gttcggtgaa
      721 cagcgtgtcc agttctgcat cgacgtcgtc agtgacgccc tcgtgcacgg gaccactctg
      781 gatcacatcg gagcgcggag cggtgagcca gtggaaccgc tcggatggtg atccgaaggc
      841 gagcgagcct ccctcgcctt cggagttgca cacggccctg tacgtcgtca ggtagcgcat
      901 caataactcg acgtccacgt gtggcgctcg tgcagagagt gcagcgcgct ccgtgagcac
      961 acgcatcccg atgaactgaa cggtcggcgc atgcagtatg acgccgaccg gcacagccga
     1021 tccaatgtga acgtgcggca cgacccggag cacggcaaaa ttgtacggaa tggtgcgggc
     1081 gggtgtcttc atggtgtcgt cacctgcgtg cagtgcgttg acgcggaaca tccgtgagcc
     1141 gctccgcgcg cattctactc gcagtctcgg caaatgcgcg cggtgccgcg agacgtgtcg
     1201 tgagatatcc gacataccgt gcgcgcgccg tcgcgggcgt atcgccgtca gccctgtacg
     1261 catcgtcttc cagcaaaccg tcaggaatgc gagcgatgat ttctctcagt acgtctccgc
     1321 cgagcatcgc tgccatctct gtatccaccg tgctcgcttc ggccgcgtgc gtcagcagca
     1381 cgtgatcgcg tatcagcggg aatggcgact gcatgcgcgc cgtgtccacg gagggccagt
     1441 catggtgggc gtacagcgcg gcaccgtgat ctatgagcca cggactgcgc tcccagatca
     1501 tgagattggt gttgcgcgcg gtgcgatcgg ggttcgtcag aaatgcatcg agccacacga
     1561 tccgcgttgc gagaggaacg ggtatgagct cccctgccgc cgtggcgtcg aagttgaacg
     1621 cgccgtccag ataacgaaga ccgacgttga tgccatgact cttccgcagt acctcgctta
     1681 tctccggatc gggttcactg cggccgaacg tctcggagac gtgcacgagt gcaagcgatg
     1741 gcaccggaag accgagggtc tgagctacca tcccgccgat gagctcggcg acaagcgcct
     1801 tcgcaccctg ccctgccccg cggaatttga ccacgaacat gccgtcatca gtatcgacga
     1861 cggccggaag cgatccaccc tcgcgtaacg gctggacgta cctccttgca gcgagagtgg
     1921 gtagcgaatt ctggctcggc attgatgaga atatagcgcg ccgcgtaatt ccggcgcacc
     1981 atattctcac ccgtgtcgct acgcggcgac tccgctggaa cggtgagcgg cgccagacgc
     2041 gccagacgtt atcacctgcg cagaaaaccg ttccatctct tccagctgtg gactgcactg
     2101 gagcagaaga agatcgacgc cagcgtccgc gaactcttcg acgcgcgcag cgacctgctc
     2161 gggcgtgcca gtcaacccgg cgcgaagacc gcgattcgat accgagtagt cttcgatgct
     2221 gacacgctgc tccagcttgg tattcgcgat ccagtcggca tagtttccgt agcccgggct
     2281 atccggcgat accgtcgtga tgcgcgtgat ttcatcgcgc acttcggatt cgctgtcgcg
     2341 tacgatcgca taacctgcaa cgccaaattg caacggtgga agctcgacac cgagcgcttc
     2401 actggcctga tcccgcaagc gacgcatgtc agcgatctta ggcgcgattc gctcgggcgg
     2461 atctccatgc atcacgtacg catcgcactg gcgtgtgatc atgcgcttcg ccgcatcgga
     2521 ctcgccaccg gcgtagatcg tgggacgcgg acgctccgtg ctcgcaaccg gcttgggctc
     2581 gagaatcagc tcgtcgaccg tatagtactt cccgctgtaa tcgagcttct cctcgctcca
     2641 ggcggagctc actatgtcga gccattccga cgtacgggcg tacctgtcgt cgtgctcgtc
     2701 gaatgcaacg ccataacgtc gcgcctcgtc cttccaccac gcggaaacca cgttgagcga
     2761 cagccgtccg ttcgagatgc gatcgatcgt cgcggcctgc tttgcgagca atgcaggcgg
     2821 atgaaacgac ggtcgaaccg cgaccatcac ttccagtgta ctagtcaccg ccacgagcgc
     2881 agcagcggtg ctccatgcgt ccagcgacgg cgcgttgat
//
LOCUS       DATIMD010000018         3773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3760117, whole genome shotgun sequence.
ACCESSION   DATIMD010000018 DATIMD010000000
VERSION     DATIMD010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3773
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3760117"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /locus_tag="VLI40_00370"
     CDS             complement(<1..324)
                     /locus_tag="VLI40_00370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95648.1"
                     /translation="MPPATSTRHHYVLGITAALAAGYIAIALFRHTAPIQRLRRLGGD
                     RTAAIVPRLLAILTFVAGALLLFSGAVPALAGRLRWLSMWIPLPVVELSHFMDNLAGV
                     MLLILA"
     gene            370..1518
                     /locus_tag="VLI40_00375"
     CDS             370..1518
                     /locus_tag="VLI40_00375"
                     /inference="COORDINATES: protein motif:HMM:NF013347.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HSU95649.1"
                     /translation="MTDSSSDLYLVTAPGLERITASELLALGITSGSVTHGGIAWRGS
                     MRDLYRANLWLRTATRVLIRASKFHAGSFAELERRAKTVPWGRVVRARDRVRFRVTCH
                     KSALYHSDAVAQRLGESVAAATGCTFAGDSESEDQEPTATVGEQLFIVRIDHDTVTVS
                     ADSSGNVLYKRGYRQATAKAPMRETLAAAMLLSSGWLHGEPLLDPLCGAGTIPIEAAL
                     IARNMAPGIDREFRFERWPGFDRTGWGALREAALAGATDSAPASIIASDRDAGAIEAA
                     MSNAVRAGVGGDVQITQQPLSAASPSDGRTGWLITNPPYGVRVGTDVRNLYARIGSMM
                     RTSFAGWNLGLLSASADLDRQLGLPLEQVFESKNGGIAIRFLTFRGAD"
     gene            1748..2188
                     /locus_tag="VLI40_00380"
     CDS             1748..2188
                     /locus_tag="VLI40_00380"
                     /inference="COORDINATES: protein motif:HMM:NF024833.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YMGG-like glycine zipper-containing protein"
                     /protein_id="HSU95650.1"
                     /translation="MPLVVLAFGCKGNDSKKVDDALNSDLSLASQANPVTPADSVSAL
                     ERARANSLAPQRSTTAPAPVAQRTVVHHVYERSGSGATRAPATHVEKNTKRDAAIGAG
                     AGAILGAVTSRNKVKGGVIGAAAGGILGAVIGNNVDKKTVPNRP"
     gene            2351..2788
                     /locus_tag="VLI40_00385"
     CDS             2351..2788
                     /locus_tag="VLI40_00385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95651.1"
                     /translation="MSPLYVVCVARHEYLASHIARFFENDEVCTVGVVGVQGAVESTR
                     SCAPDVVVCEYELLTTQPLDEWECDEVLRNTPIVAVSLTRRSNELVPLDCNGIAGFLY
                     LPTLDSANARKLVRAAASRPRFTPGAPTFTGIRSESLSADAPL"
     gene            2836..>3773
                     /locus_tag="VLI40_00390"
     CDS             2836..>3773
                     /locus_tag="VLI40_00390"
                     /inference="COORDINATES: protein motif:HMM:NF027404.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95652.1"
                     /translation="MSSEAITSVFNDGYIAEVYDAYKRDPASVDESWRQFFRFAEGLG
                     GTGSIGQTAVGSDALRAAAGAAALLDAIRAYGHLAVAIDPLGSAPPGSPELSPESHGV
                     TEALLASIPGSVVGMPDATAAAATARLRALYSSTTGFEFEHLGSFKERQWLRDSVEGG
                     TYHQDLTADEKKAILARLTEVDALERFLGRAYQGYKRFSIEGSDALVVMLDEIIALSA
                     LGGSREVAMSMAHRGRINVLTHVLGKSYATIFDEFEDKHPGGAVDTSGDVKYHQGAEG
                     TREIGGREIALTLVPNPSHLEFVNAVLEGVARAKQRG"
BASE COUNT          730 a         1082 c         1242 g          719 t
ORIGIN      
        1 cgcgagaatg agcagcatca cgcccgcgag gttgtccatg aagtgggaca gctcgacgac
       61 cgggagcgga atccacatgc tcaaccatct cagtcgtccg gcgagtgccg gcacggcgcc
      121 ggagaacaac aggagcgcgc ccgcgacaaa cgtaagtatc gcgagcaagc gcggaacgat
      181 tgccgccgta cgatcaccgc ccagccgccg caggcgctga atcggagctg tgtgccggaa
      241 cagcgcgatg gctatatagc ccgccgcaag agccgccgtg atgccaagta cgtaatgatg
      301 gcgcgtggaa gttgctggtg gcactgttac tcgcaggcgg ggatgcgtaa tgtcacgaag
      361 cgaaaatata tgactgattc atcttctgat ctctatttag tcaccgcgcc gggtctggag
      421 cgcataactg cgtcggagct ccttgccctc ggcatcactt ccggaagcgt cacgcatggc
      481 ggtattgcat ggcgtggctc gatgcgggat ctgtaccgtg ccaatctgtg gctgcgtaca
      541 gctacgcggg tactgatacg cgcatcaaaa tttcatgccg gatcgttcgc agaactggag
      601 cggcgggcaa agacggtgcc gtggggccgt gttgttcgcg cgcgagatcg cgtccgcttc
      661 agggtcacat gtcacaagtc ggcgctgtat cacagcgatg ctgtggctca aagactgggt
      721 gagagcgtcg cggcggccac tggatgcacg tttgccggag actcggaatc cgaggatcag
      781 gagccgacag cgacggttgg cgagcaactg ttcatcgtgc gtatcgacca cgatactgtc
      841 acagtgagcg ccgatagctc ggggaacgtg ctgtacaagc gtggctaccg gcaggcgaca
      901 gccaaggcgc cgatgcggga aacgctggcg gccgcgatgc tgctgtcgag cggatggctt
      961 cacggggagc cgctgctcga tccgctgtgc ggtgcaggaa cgattccgat cgaggccgct
     1021 cttattgcgc gaaacatggc acctgggatc gaccgtgaat tcaggtttga gcggtggccc
     1081 ggcttcgatc gcacgggatg gggcgcattg cgcgaggctg cgctcgctgg cgcgacggat
     1141 tctgcaccgg cgagcataat tgcctccgat cgggacgcgg gcgccataga agcggccatg
     1201 tcgaacgccg tacgagccgg ggttggcggg gacgtccaga tcacgcagca gccgctgtcg
     1261 gccgcaagcc cgagcgacgg ccggacgggc tggctgatta ccaatcctcc gtacggcgta
     1321 cgtgttggaa cagacgttcg gaacctgtat gcgcgaatcg gctcgatgat gcggacatcg
     1381 ttcgcaggct ggaatttggg gcttctgtcg gcttccgcag atctcgaccg gcagttggga
     1441 ttaccattgg aacaagtgtt cgaatcaaag aacggcggta tcgccattcg gtttttgacg
     1501 ttccggggag ccgattgagc aaggatcgtt gccagatgtt tctagcgaac cgctcagaaa
     1561 acgaaccccg actggagccg agtgtatggt aaggttatgg tcggggaccg attaggtttg
     1621 ggaacctggt ggtgattgtc ccggcccggg tggcacagtc tctgcccttt ttggacgcgt
     1681 tcggcaatcc tgccgccgca aatgctggag tcagaatctt atgaagcctt tttatcgttt
     1741 agcaattttg ccgctggtcg tcctcgcctt cgggtgcaag ggcaacgact ccaagaaagt
     1801 cgacgacgcc ctgaacagcg atctgtcgct cgcctcgcag gccaatcccg tgactccggc
     1861 cgacagcgtt tcggcgctcg agcgcgctcg cgccaattct ctcgctccac aacggagcac
     1921 cacggcaccc gctcctgtag cacagcgaac ggtggtacat cacgtttatg agagaagcgg
     1981 ctcaggtgct acgcgggcac cggccacgca tgtggaaaag aataccaagc gtgacgccgc
     2041 gatcggcgct ggcgctggcg caatactcgg cgcggtgacg agcaggaaca aggtgaaggg
     2101 cggagtcatc ggcgcggccg ccggcggtat cctcggcgcg gtgatcggga acaacgtgga
     2161 caagaagacg gtaccaaacc ggccgtaacg cggtatttca ttacgggctt cgaccggatg
     2221 aagggcggct ctgcgccgcc ctttttcttg tccgtgggac aacttttttt accattgcgg
     2281 tggcgcggcc actttccaag ttggcgccgg cgccgcatca ttctgtagat tgagtacaga
     2341 ggccgaaatc ttgagtccat tgtacgtcgt ctgtgtagcg cgccacgaat atctcgcaag
     2401 ccacatcgct cgattcttcg agaacgatga agtctgcacg gtcggtgttg taggagtgca
     2461 gggagcggtg gaatcgacgc gctcatgcgc accggacgtc gtcgtgtgcg agtatgaatt
     2521 gttgacgacg cagccgcttg acgagtggga atgcgacgaa gtgctgcgca acacgccgat
     2581 cgtcgccgtg agcctcacgc gcagatccaa cgagctcgtg ccgctcgact gtaacggaat
     2641 cgcgggattt ctgtatcttc caacgctgga ttcggcgaac gcgcgcaagc tggtacgcgc
     2701 ggcggcgtcg cgtccacgct tcacaccggg tgcgccgacc ttcaccggca tccgttccga
     2761 atccctttcg gcagacgctc ccctctgagg cggagtgcgc gaaaagcgct gcaagaaagg
     2821 gttaaattga gagccatgag tagcgaagcc ataacgagcg tcttcaacga cggttacatc
     2881 gccgaagttt acgacgcata caagcgcgat cctgcgtcgg tagatgagtc ctggcgccaa
     2941 ttcttccgtt tcgccgaggg gcttggcgga acgggctcca tcggtcagac ggcggtcggc
     3001 tcggacgcac tccgtgcggc ggctggcgct gcggcgctgc tcgacgcaat tcgtgcgtat
     3061 ggccatctcg cggttgcgat agatccgctt ggaagcgcac cgcccggatc tccggagctt
     3121 agtccggaga gccatggcgt aacggaggcg ctgctcgcat cgattcctgg cagtgtcgta
     3181 ggaatgccgg acgctactgc cgctgccgcc actgcgcggc tgcgcgccct gtactcgtcg
     3241 acgaccggat tcgaattcga gcacttgggc tcgttcaagg agcgccagtg gctgcgtgac
     3301 tcggtcgaag gcggcacgta ccatcaggat ctcacggctg acgagaaaaa ggcaatcctc
     3361 gcgcgactca cggaagtcga tgcgctcgag cgcttcctgg gacgcgcgta ccagggctac
     3421 aagcgtttct cgatcgaggg aagcgatgcg cttgtggtga tgctggacga gatcatcgcg
     3481 ctttccgcgc tgggtggctc gcgcgaggtc gcgatgtcca tggcgcatcg cggacgcatc
     3541 aacgtgctca cgcacgtgct tggcaagtcc tatgcgacga tcttcgacga gttcgaggac
     3601 aagcatcctg gcggcgcggt cgatacgagc ggggatgtga agtaccatca gggggcggaa
     3661 ggcacacgcg agatcggcgg gcgcgagatc gcgcttacgc tcgtcccgaa tccgagccac
     3721 ctcgagttcg tgaatgcggt gctcgaaggt gttgcgcgcg ccaagcagcg cgg
//
LOCUS       DATIMD010000019         8211 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_295581, whole genome shotgun sequence.
ACCESSION   DATIMD010000019 DATIMD010000000
VERSION     DATIMD010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8211
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295581"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            722..3301
                     /locus_tag="VLI40_00395"
     CDS             722..3301
                     /locus_tag="VLI40_00395"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSU95653.1"
                     /translation="MEPAATGAQLTQSPAGPTHVGPYRIVRLLGEGGMGVVYLAEQDE
                     PVRRQVALKILRTGLNTNEVVARFHAEQQTLAMMEHTNITRVYDAGVTESGLPYFVME
                     YVVGHTITEYAATHRLSIRERINVFIQICRAVQHAHQKGIIHRDIKPSNVIVTDTDGE
                     PVCKVIDFGIAKAIAPSLESERLTMTGMALGTPAYMSPEQFLSDGTDIDTRADIYALG
                     AMLYELLAGVLPFDPAKFSGMAALLAQHVTNDPPPPSVQFGGLPAERRAMLAAERRTD
                     AATLRHTLAGDLDAVILDALERDRERRYATANAFALDLENYLENKPVAAHTSSVAYRA
                     GKFTRRHRVGVAFAATVLVLLAAAAIGATVQARRLARARAVAVVRQGQAEDLIGFMLG
                     DLRDKLTVMGRLDVLDSVGAKALVYFAAVPASQLSDEESFRRAQALQQLGEVRMAQGK
                     LPDAAQLMGQSLAISQRLALRDSLNGRWQVGLAHSHFWAGNVDWELGSIDSALNHFVP
                     FVTISRRLIAHYPDSLDYRVELAYALNNIGFAKEATGDIRGALASYMASLGINQSLVD
                     LDPKKLDWQVSLAAEHNAAAVAQRKLGDLSGALASHNSELAIKQSLLARDSTNVEYEH
                     YVGIAHAYRGELRMLTGDEQGALDDALITRALYARIVAHDTTNASMQWSLAKTDRQIA
                     QIHLEEGKPEDALAELSAGQAIIGRLLLKTPGNLRAAAEQVLSGTVQAQGLLATGRAR
                     DALRVAQRAASDADAAVAAKSKDIERRRAAAEANLAVGDAQSLAGNAAGARSAWSHGL
                     ALIDSTAAATGETELLAVQATALLELGRADDAAPIMSELDRRGYRRPSFLRLAREHRR
                     SVA"
     gene            3392..3718
                     /locus_tag="VLI40_00400"
     CDS             3392..3718
                     /locus_tag="VLI40_00400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95654.1"
                     /translation="MPDITVEVTFTDPDTFTFNPPTATLNAAGKVILKASPANAAWTF
                     VSVNNLPTSEFTWSLKGNNTEIHIDDAFTANGEFGYTVTVHDGSGDHTSGPTTAATVP
                     PMIMNQ"
     gene            3883..6357
                     /locus_tag="VLI40_00405"
     CDS             3883..6357
                     /locus_tag="VLI40_00405"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSU95655.1"
                     /translation="MTPYPHVATAPGARSATAAVGRTGESFTPAAALAPIYRQADRWM
                     AVFISAHLLFAVAIAPVYGTWNAVVFVGGGLSLSFVLSAWRWPGSFWTRCVAGVALQG
                     FAALHIYQMHGMAEMHFFIFTAVTMMIAYQDVVALWPGVVGIVAQHTLFAYWHNAGTP
                     IGGVPFFEHHHAGSMQLGFHFGIAVVEVVIASFWTYALRQRTLRNAKQRAALADANAA
                     LAEREADTARSLALVEATLEATADGILVLDAADRVTDYNKRVAEMWAISPALLAEGDG
                     TAVRNRLLAQVCDPIALSSHYAVTGNEPVYQRLDQVELTDGRVFECHVRPQHVGARAV
                     GRVLSFHDVTERVSLERELAHQALTDALTGLANRVLFRDRVAHALARSSRNPGSVAVL
                     LVDLDGFKLVNDGLGHGVGDAVLCRVAECFQHAVRDGDTVARLGGDEFAILLEDVRTV
                     EEADAAAARLYGALMLPVTVALPQPGAMPSAGSDADGQSGESGAAHEREIFVKASIGI
                     ALATPGEDPEALLRNADVAMYAAKARGKGQAMHFERSMHEEALTRLRLEEDLRVAVAE
                     LVQGGDSAFAVVFQPIVALDTQRVVSAEALVRWNHPRRGIISPEEFIPVAEDTGLIVP
                     LGLWVLHQACAAAASWPVSSDDSDIGVSVNLSGRQLQDASIIDDVRAVLESTGLAPGR
                     LTLEITESVVMRDTPQTLAQLTALKTLGLRLAVDDFGTGYSSLSYLRQFPVDVLKIDK
                     SFIDGIARGGDGAALARTIVALADTLQLRTVAEGIEDGAQHTALRALGCTLGQGFLFA
                     RPMTQLELLRCIAGNTHPVAQTGVRE"
     gene            complement(6390..6914)
                     /locus_tag="VLI40_00410"
     CDS             complement(6390..6914)
                     /locus_tag="VLI40_00410"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HSU95656.1"
                     /translation="MSVTHTVIDSPIGELTLVARDGVLTGVYFPGHTRLPNPAAFGQR
                     VDTGFEASVQQLGEYFRGERTQFDLPLAPHGSEFQLRVWSLLREIPYGETRSYGQLAK
                     ELGNPLLAREVGGANARNPLSIVVPCHRVVGADGRLVGYAGGLERKQFLLDLEAPAAR
                     GQLLIGGLIQQTGA"
     gene            7239..7715
                     /locus_tag="VLI40_00415"
     CDS             7239..7715
                     /locus_tag="VLI40_00415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95657.1"
                     /translation="MRLPAFTIACYVVAVFVVAGCKPAPERPHTLAVMDGRHSRCDNP
                     ILVTMPDVGDYEFNGGFVHRDSVPTLLHAAYDSRHGPCRVLFLSVNPRRAWEDVEFLE
                     REAAKIQVPLYDARLSHVIRTGPKMTCRTDVSERGVWRMCASDWNAVDSEARHAHQ"
     gene            complement(7770..>8211)
                     /locus_tag="VLI40_00420"
     CDS             complement(7770..>8211)
                     /locus_tag="VLI40_00420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95658.1"
                     /translation="GARPAAARVDARRPPLMERCVFLVTCVVLLTIMACSGSTPTGVA
                     CTAIYVYGISLKVQNAATGAPITDSATVRITDGSYVESYNFLGPAGQPTSGTLSAAGE
                     RAGTYSISIRKAGFAPYDTSGVRVTKDVCHVHPVEVIAKLQPTT"
BASE COUNT         1527 a         2536 c         2594 g         1554 t
ORIGIN      
        1 gcaacaggtt acggcaatca acttcgtgtt cgacacattg ctcttcgccg ggacactgct
       61 catgataagc cgagcgatct ccggcgcggt gagcgtccct cgcgctgcac gcgctgacct
      121 ggcaggtgag ccggcctcgt agtcgcactg cgctgataac aggcagatct cgtgtaaacg
      181 ttccagaggc tgcggttcaa cgcccggggt tcggtatgaa ccccgggcgt tctgtcgtca
      241 tgcacacaat gttcacgcct gagtgcagca gcgcggcgcg tgacttcacg gcattcgccg
      301 gtccgccgac gcaggccgac caacccggcg agcccggaac cgacgagcca gagtgtgccg
      361 ggttccggcg ttgtcgtggt ggtcacggcc gccgtgaacg ggcgtgacct gaaccttatc
      421 atgatccgct cctgtgcttc cagtaaacgg tgatcctcac agccaatgga cgctgagcgc
      481 cggcacgaga cattccagcg atgtggattc tgctgcaatg gaccgcgcca ttcctgcgct
      541 ggccgcgaac tagccgctat gcccgacaat tgctctattg cgggacgaat cgcgccaacc
      601 cataattgag gcgtcgccgg agagcgaact cccgcgcacg aaggccgagt cgcgacctct
      661 tcactcatga tgagcgaggt gcagcgtggt gccgtccgag cccattggta caagctcctc
      721 tgtggagccg gcagcaaccg gcgcacaatt gactcaatct ccggccggtc ccacgcatgt
      781 tggaccgtac cgcatcgttc gcctcctcgg cgagggcggc atgggcgtcg tttacctcgc
      841 ggagcaggac gagcccgttc gtcgccaggt cgcgctcaag attctccgca ctggcctcaa
      901 cactaacgag gtagtggcgc gcttccacgc cgagcagcag acgctggcga tgatggagca
      961 cacgaacatc acacgcgttt atgacgctgg tgtcacggag tcgggactgc cttatttcgt
     1021 gatggaatac gtggttggac acaccatcac cgaatacgcc gcaacacatc ggctgagcat
     1081 acgcgaacgc atcaatgtgt tcatccagat ttgccgagcg gtgcagcacg cgcatcagaa
     1141 gggaatcatc catcgcgaca tcaagccgtc gaatgtcatc gtcacggata ccgacggtga
     1201 gcctgtgtgc aaggtgatcg attttggaat cgcgaaggct atcgcgccgt ctctcgaaag
     1261 cgagcggctg acgatgactg gcatggctct tggcacaccc gcgtacatga gtccggaaca
     1321 gttcctctca gacggcaccg acatcgacac gcgagcggac atatacgcgc ttggggccat
     1381 gctgtacgag ctgctcgcgg gagtcctgcc gttcgatccc gcgaagttct ccggaatggc
     1441 ggcgttgctg gcgcagcacg taacgaacga tccgccgccg ccgagcgtgc agttcggtgg
     1501 actgccagcc gagcggcgtg caatgcttgc tgcggagcgt cggaccgacg ccgcgacgct
     1561 ccggcacact cttgcgggcg atctggatgc cgtaattctc gacgctctcg agcgagatcg
     1621 cgagcgacgc tatgcgaccg ccaacgcttt tgcgcttgat ctcgagaact acctggagaa
     1681 caagccggtc gccgcgcata cgtcgagcgt cgcttatcgt gccggaaagt tcactcggcg
     1741 gcaccgcgtc ggcgtggcgt tcgcggcgac ggtgcttgtt cttctggctg ctgccgccat
     1801 cggtgccact gtccaggccc gacggctcgc gcgcgcgcgc gccgtcgccg ttgtgcggca
     1861 gggtcaggcg gaggatctga ttggattcat gctcggtgat ctgcgtgaca agctcacagt
     1921 gatgggacga ctcgacgtgc tggattccgt cggtgcgaag gcgctcgtct atttcgcggc
     1981 cgtacccgct tcacagctca gcgatgagga gtcgttccgt cgcgcgcagg cactgcagca
     2041 acttggcgag gtgcgcatgg cgcagggaaa gctgcctgac gccgcccagc tgatgggaca
     2101 gtctcttgca atctctcagc ggttggccct gcgcgattca ctgaacgggc gatggcaggt
     2161 tgggctcgct cacagccact tctgggctgg caacgtcgat tgggagctgg gaagcatcga
     2221 ctcggccctg aaccacttcg tacccttcgt cacgatcagc cggcggctga tcgcgcatta
     2281 cccggacagt ctggattatc gcgtcgagct cgcatacgca ctgaacaaca tcggcttcgc
     2341 gaaggaggcg accggtgata ttcgcggtgc tctcgcatca tacatggcga gcctcggcat
     2401 aaatcagagc ctcgtggacc tcgatcccaa gaagctggat tggcaggtca gtctcgcggc
     2461 ggagcacaat gcagcagccg ttgcacagcg caagctcggc gatctctccg gtgcactcgc
     2521 gagccacaac agcgaactgg caataaagca gtcgcttctc gcgcgcgatt caaccaacgt
     2581 tgaatatgag cactacgtcg gcattgctca cgcataccgc ggtgagctcc gcatgctgac
     2641 gggcgacgag cagggagcgc ttgacgatgc actgatcacg cgtgcgctgt atgcgaggat
     2701 cgttgcacac gacacgacca acgcatcgat gcagtggagt cttgcgaaaa ctgatcggca
     2761 gatcgcgcag attcatctcg aggaaggaaa gccggaggac gcgctcgctg aactgagcgc
     2821 tggccaggca atcatcggtc ggctgctgct caagacaccg gggaatcttc gtgccgcggc
     2881 agagcaggtg ttgtcgggta cggtgcaggc gcagggtctt ctggcgactg gccgtgcaag
     2941 ggacgcgctg agagtggcgc agcgcgcggc atccgacgct gatgccgccg tcgccgcgaa
     3001 atcgaaggac atcgaacgtc gtcgcgcggc ggcggaggcg aatctcgcag taggcgatgc
     3061 gcaatcgctg gctggcaatg cggctggtgc gcgctccgcc tggtcgcatg gtctcgcgct
     3121 cattgattcg acggcagctg cgaccgggga aacggagctg ctcgccgtgc aggcaaccgc
     3181 gctgctcgag ctcgggcgcg cggacgacgc agcaccaatc atgagcgagc tcgatcggcg
     3241 cggctatcgt agaccttcgt tcctgcggtt ggcgcgcgag catcgccgtt ccgtggcgtg
     3301 atgtttgtgt acaagaaggg cgaagtgtgc agcatcgtcc gcggacattc cgtccgcggt
     3361 caggggatta accactatgg agattcgtcg catgccggac atcacagttg aagtaacatt
     3421 tactgaccct gacacgttta cgttcaatcc cccaaccgcg acgttgaacg ctgcggggaa
     3481 agtcatactc aaggcttcac cggccaacgc cgcctggacg tttgtgagcg taaataatct
     3541 cccgacttcc gagttcacgt ggagtctcaa ggggaacaat accgagatcc atattgatga
     3601 tgcatttact gccaacgggg aatttggata tacggttacg gtgcacgatg gcagcggtga
     3661 tcatacgagc gggccaacta ccgcagcgac cgtgccgccg atgattatga accagtaacg
     3721 gcgacacccc gcagctcgtg tgcgacccgc tggggcgtcg agccctttcc gggcctgccc
     3781 acggccaatg ggttgaggta acagggccga tccagcagcc ccgcagcggt tagccatcgc
     3841 cgggagtgtg tctgcggcac cgtgcggccg atacttctgc agatgacgcc gtatccacac
     3901 gttgccaccg ctcccggcgc gcggagcgcg accgctgccg ttggcaggac cggcgaatcc
     3961 ttcacgccgg ccgccgcgct cgcacccatc taccgccagg cggaccgctg gatggcggtg
     4021 ttcatatccg ctcatctcct cttcgcggtt gccatcgcac cggtgtacgg aacctggaac
     4081 gccgtcgtgt tcgttggcgg tggattgtcc ctgtcgttcg tcctcagcgc ctggcgctgg
     4141 ccgggctcgt tctggacccg ctgcgtagcg ggcgtcgcac ttcagggatt tgccgccctg
     4201 cacatatacc agatgcacgg catggcggag atgcacttct tcatcttcac ggctgtgacg
     4261 atgatgattg cctaccagga tgtcgtggcg ctctggcctg gcgtggtggg tatcgtagcg
     4321 cagcacacgc tgttcgcgta ctggcacaac gcgggaaccc cgatcggcgg tgttccgttc
     4381 ttcgagcatc atcacgccgg atcgatgcag ctcggctttc acttcggaat cgccgttgtg
     4441 gaggtcgtga tagcgtcgtt ctggacatac gcgctccggc agcggacact ccgcaacgcg
     4501 aagcagcgag ctgccctggc agatgcgaat gcggcactcg cagagcggga ggcagatacc
     4561 gcgcgctctc tcgcgcttgt cgaagcgaca ctcgaagcga ctgctgatgg tattctcgta
     4621 ctggacgccg ccgacagggt cacggattac aacaagcgtg ttgcggaaat gtgggcgatc
     4681 tcgccggcgc tgctcgccga aggcgatggc actgctgtcc ggaaccgtct cctcgcacag
     4741 gtttgcgacc ccatcgcgct gagctcacac tacgccgtga cgggcaatga gccggtgtac
     4801 cagcggctcg atcaggtgga gttgaccgat gggcgtgtgt tcgagtgtca cgtgcgcccg
     4861 cagcatgtcg gcgcgcgcgc ggtcggacgc gtgctcagct tccacgatgt aaccgagcgc
     4921 gtcagcctcg aacgtgagct tgcacatcag gcgctcactg acgcattgac gggactcgcc
     4981 aatcgggtcc tgttccgcga tcgcgtggcg catgcgctcg cacggagcag ccggaatccg
     5041 ggtagcgtgg cagtcctgct cgtggatctg gacgggttca agctggtcaa cgatgggttg
     5101 ggccatgggg ttggtgacgc agtgctgtgc agggtcgccg agtgtttcca gcacgccgtt
     5161 cgcgatggcg acactgtcgc gcgactcggc ggagacgaat ttgccatcct gctcgaggac
     5221 gtccggaccg ttgaggaagc cgacgcggcc gctgcacgat tgtatggtgc gctgatgctg
     5281 cccgtgaccg tggcgctgcc acagcccggc gcaatgccat ccgccgggtc ggatgcggac
     5341 gggcagagtg gtgagagcgg tgccgcgcac gagcgcgaga tcttcgtcaa ggcaagcatc
     5401 ggaattgcac tcgctacacc tggcgaggat ccggaagcgc tgttgcgtaa tgcggatgtg
     5461 gcgatgtacg ccgcgaaagc gcgcggcaag ggtcaggcga tgcacttcga gcgatcgatg
     5521 cacgaggagg ctctcacacg tctgcgactc gaggaggatc tgcgcgtagc agttgcggaa
     5581 ctggtgcagg gcggcgacag tgcgttcgcc gtggtcttcc agccgatcgt cgcactggac
     5641 acgcaacggg tggtcagcgc ggaggcactg gtgcgctgga atcatccgcg tcgcggaata
     5701 atctctcccg aagagttcat tccagtagcc gaggatacgg ggctcatagt cccactcggc
     5761 ctctgggtgc ttcatcaggc gtgcgctgcg gccgcgagct ggccggtttc atccgacgac
     5821 agtgacatcg gtgtatcggt caacctctcg ggacgacagc tccaggatgc gtccatcatc
     5881 gacgatgtcc gggcggtgct cgaatcgacc ggcctcgcac caggacggct gacgctcgag
     5941 atcaccgaaa gcgtcgtcat gcgtgacacg ccgcagacgc tcgcgcagct cacggcactc
     6001 aagacgctcg gactccgcct ggctgtcgac gatttcggaa ccggatactc atctctcagt
     6061 tacctcaggc agtttccagt ggacgtgctc aagatcgaca agagcttcat cgatggaatc
     6121 gcgcgcggtg gtgatggcgc cgcactggca cgcaccatcg tggcgctcgc agacacgctc
     6181 cagctccgga cggtcgccga aggtatcgag gacggtgcgc agcacactgc ccttcgtgca
     6241 ctcggctgca cactcggtca ggggttcctg ttcgcccgac cgatgacgca gttggaactc
     6301 cttcgctgca tcgctgggaa tacacatccc gtcgcccaga ccggagtgcg tgagtagttg
     6361 atcggctgtt ggaccgggcg ttgacccggt tatgctccgg tttgctgaat cagaccaccg
     6421 atgagtagct gtccgcgagc cgctggcgcc tcgagatcca gcaggaactg tttccgctcg
     6481 agtccgccgg cgtaaccaac cagccgtcca tcagcgccaa ctactctatg gcacggcacc
     6541 actatgctca gcgggttgcg agcgttcgcg cctccaacct cgcgcgcgag caacggattg
     6601 ccaagctcct tcgccaactg accatacgag cgcgtctcac catagggaat ctcgcgcaac
     6661 agactccata cgcgcagctg gaattcgctg ccgtgcggcg cgagcgggag atcgaactgc
     6721 gtgcgctcgc cccggaagta ttcgccaagc tgctgcactg atgcttcgaa tccagtgtca
     6781 acgcgttgac cgaatgcggc aggattgggg aggcgcgtat gtccggggaa gtatacgccc
     6841 gtcagcacgc cgtcgcgtgc gaccagggtc agctcgccga ttggtgaatc aatgactgta
     6901 tgagtgacgc tcatctcttc ctccatttca ccgaaagcta gtcctttccg gcgatcacgc
     6961 tcgccacttt cggacatgga tacgagcaca acacgcgagg aatgacgtgg tccggcaacg
     7021 ccgccgtaat ggaattccac catgtccgaa agtggcgatg tctggacgca agcgccgaat
     7081 gcgctccatg cccgctccag cggctccgcg agtcttaccg gcgacgttcg ccggccagtc
     7141 ttgtccgcag ggaatacgcc ggaggataaa ttatcaccgc gccacgattt gcacgcacga
     7201 tcgcctttcc gctgtcgtac tgccagatac ctagaaaaat gcgcctgcct gcattcacca
     7261 tcgcgtgtta cgtcgtcgca gtgtttgtgg tggctgggtg caagccggca ccggagcggc
     7321 cgcacactct cgcggtaatg gacgggaggc attcgcgctg cgacaatccg atactggtca
     7381 cgatgcccga cgttggcgat tacgagttca acggcgggtt cgtgcacagg gattccgttc
     7441 cgacgttgct gcatgcggcc tacgattccc gccatggtcc gtgcagagtg ctgttcctca
     7501 gtgtgaaccc acgtcgcgca tgggaagacg tcgagttcct cgaacgtgag gccgccaaga
     7561 ttcaggtccc gctatacgat gcgcgactga gccatgtgat acgcacgggc cccaaaatga
     7621 cttgtcgcac cgacgtcagc gagcgcgggg tgtggcgcat gtgcgccagt gattggaacg
     7681 ccgtcgactc ggaagcgcga cacgctcacc aatgagctcg ccgcgtcgat gacaccggca
     7741 actctcaggc ggtagcgaat tacccgaaat cacgtggtcg gctgcagctt cgcgatcacc
     7801 tcgaccgggt gtacgtggca cacgtctttc gtcaccctta caccacttgt gtcgtacggg
     7861 gcgaatccgg ctttccgaat cgatatgctg tacgtacctg cacgctcgcc ggcggcagat
     7921 agcgttccac tcgttggctg gccggccggg ccgaggaaat tgtaggactc gacgtagctg
     7981 ccatccgtga ttcgcactgt cgcactgtcg gtaatcggtg cgccagttgc ggcgttctgc
     8041 accttgagcg agatgccata aacgtaaatc gcggtgcacg cgacacctgt cggcgtcgag
     8101 cccgagcacg ccataatagt gagtagcaca acgcacgtca cgagaaaaac gcaccgctcc
     8161 atcaacggtg gccgtcgggc gtcgacgcgc gcggcagctg gccgggctcc g
//
LOCUS       DATIMD010000020         1798 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2894706, whole genome shotgun sequence.
ACCESSION   DATIMD010000020 DATIMD010000000
VERSION     DATIMD010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2894706"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..639
                     /locus_tag="VLI40_00425"
     CDS             <1..639
                     /locus_tag="VLI40_00425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95659.1"
                     /translation="VRWLAIMMLAICVSGGVSAAQSAHVDIVLPARPDLATQPPAVRT
                     IGVLAAGRTAELIRNGFPARLHYKLERWAAGTFVNDVKATAEWEMIAQYDPLAKTYKL
                     IRATTKNAVVVGEYTELSDADAKLADPFPAPISPPRSGEKSYYALTLNVEAMSLGDLD
                     EVQRWLRGELRPAVRGHRNPGVAVSSGVRTLVVRILGGERIVYQASTGVFKP"
     gene            complement(636..>1798)
                     /locus_tag="VLI40_00430"
     CDS             complement(636..>1798)
                     /locus_tag="VLI40_00430"
                     /inference="COORDINATES: protein motif:HMM:NF025042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4147 domain-containing protein"
                     /protein_id="HSU95660.1"
                     /translation="LVAVGKAAGAMASAALDVVGPSIRRGVVISPDPVTISAGGVSCF
                     VGGHPIPNERGAQGARMIVEIAGSLRERETLLCLISGGASALTTLPSAGLSVSDVASA
                     TTLLLRAGATIGELNCVRKHVDQLKGGRLAALAFPARVVALVLSDVVGDSLATIASGP
                     TVADPTTIADAIAVCQSRGVWGRMPASIRSHLESGIDESPKADDPRLRNAETSVIGSN
                     ITAAEAACSQATAFGYAARIVTTSLTGEARDAGREIVKAARDECARVGGRIALVYGGE
                     TTVTVRGTGTGGRNQELALGAAIAMDGIPGMAVVSLGTDGVDGPTDAAGAVADGDSIS
                     KARAHGIDASSVLAANDSYTFWKSIGGLVRTGPTGTNVMDIIVALAAPDGAS"
BASE COUNT          333 a          588 c          572 g          305 t
ORIGIN      
        1 gtgcgctggc tcgcgatcat gatgctcgcg atatgcgtct ctggcggcgt gagcgcagcg
       61 caatcggcgc acgtcgacat cgtacttccg gcgcgacccg atctcgcgac gcaaccgccc
      121 gcggtgcgca cgatcggcgt actcgccgcg ggcagaactg cggagctgat acgcaacggc
      181 tttccggcac gactgcacta caagctcgaa cgctgggcgg caggaacatt cgtaaatgat
      241 gtaaaggcaa ccgccgagtg ggagatgatc gcgcaatacg atcccctcgc gaaaacgtac
      301 aagctgatcc gcgcgacaac gaagaacgcc gtcgtagtgg gcgaatacac ggagctgagc
      361 gacgctgatg cgaagctggc cgaccccttc cccgcgccta tctcaccgcc gcgatcgggc
      421 gagaagagct attacgcgct gacgttgaac gtcgaggcga tgtcactggg cgacctcgac
      481 gaagtgcagc gctggctgcg cggtgagctg cgtccggcgg tacggggtca tcgcaatccc
      541 ggagtcgcgg taagctccgg tgtgcgaacg ctcgtcgtgc gaatccttgg cggcgagcgg
      601 attgtatatc aggccagcac cggcgtgttc aagccttagc tggcaccgtc cggcgcagcg
      661 agcgcgacga tgatgtccat cacgttcgta ccggtgggtc cggttcgtac gagcccgcca
      721 atggatttcc agaatgtgta gctgtcgttc gcggcgagca ctgagctcgc atcgatacca
      781 tgagcgcgtg ccttgctgat cgaatcgccg tcagccacag cgccggcagc atcagtcggc
      841 ccgtcgacgc cgtccgttcc cagcgatacg acggccattc cgggaatgcc gtccatcgcg
      901 atcgcggcac ccagagcgag ctcctggttg cgtccgcccg tacccgtgcc acgcaccgtg
      961 accgtggtct cgccgccata aaccaacgca atcctgccgc cgactcgcgc gcattcgtct
     1021 cgtgccgcct tcacgatctc gcggcccgca tcgcgtgcct cgcctgtgag tgacgtcgtg
     1081 acgatccgtg cagcgtaacc aaacgcggtt gcctgcgagc acgccgcttc ggctgcggtg
     1141 atgttacttc cgatgacgga ggtctcggcg tttcgcaggc gcggatcatc cgccttgggc
     1201 gattcgtcga tgccgctctc cagatgcgaa cggatcgacg caggcatcct gccccacaca
     1261 ccacgcgact ggcacacagc gattgcgtct gcgatcgtcg tggggtcggc gacagtcgga
     1321 ccagatgcga tggtcgcgag cgagtcgcca acgacgtccg acaatacgag tgcgacaacg
     1381 cgggctggaa atgcgagcgc agccagacgt ccacccttga gctggtcgac gtgctttcga
     1441 acgcaattca actctccaat cgttgcgccg gcgcgaagga gcagcgtagt ggcgctcgcg
     1501 acgtcactga cggacagccc tgccgacggg agtgtagtca gcgccgacgc tccgccggag
     1561 atgagacaca ggagtgtttc gcgctcacgg agcgatccgg cgatttcgac tatcatgcgc
     1621 gcgccttgcg cgccacgctc gttggggatg ggatgaccgc caacgaagca gctgacgcca
     1681 cccgcggata ttgtcaccgg atccggtgaa atgacgacgc cgcgccggat ggagggcccg
     1741 accacatcca acgcggctga cgccatggct ccggctgcct ttccaacagc gacgagcg
//
LOCUS       DATIMD010000021         3156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2895151, whole genome shotgun sequence.
ACCESSION   DATIMD010000021 DATIMD010000000
VERSION     DATIMD010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3156
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2895151"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(218..685)
                     /locus_tag="VLI40_00435"
     CDS             complement(218..685)
                     /locus_tag="VLI40_00435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95661.1"
                     /translation="MQRTVSSPHSGAREVSGRPRPALRYTIDVAAGIVFVDLLNVRYP
                     GAVVAALRAIQDDPAYRQDFGILVECGYLVSPTAEGIRELARACFRDRAELAGAVAVV
                     AAGQAVNAGARFFAMLTAAPRDRLRVFEVFGEAHAWLCLRCFNARSMRQSTPQ"
     gene            complement(836..1075)
                     /locus_tag="VLI40_00440"
     CDS             complement(836..1075)
                     /locus_tag="VLI40_00440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95662.1"
                     /translation="MTIPFPTPDDPVIVTVFDRTFFVCWIDVRVDAPSGAMWFAQTSD
                     GRIRSVGAYGRENTLEQIRQRVDAWWRELLASTTQ"
     gene            complement(1072..1284)
                     /locus_tag="VLI40_00445"
     CDS             complement(1072..1284)
                     /locus_tag="VLI40_00445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95663.1"
                     /translation="MVRVRAHDRNVAHDVDCAVCGKYRISVAEEDRVARLGPAIATLA
                     PAIKRVNARGFRLSIPEQMLIPLEHE"
     gene            complement(1677..2108)
                     /gene="merB"
                     /locus_tag="VLI40_00450"
     CDS             complement(1677..2108)
                     /gene="merB"
                     /locus_tag="VLI40_00450"
                     /EC_number="4.99.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF015216.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018836 - alkylmercury lyase activity
                     [Evidence IEA];
                     GO_process: GO:0046413 - organomercury catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="organomercurial lyase"
                     /protein_id="HSU95664.1"
                     /translation="MFNLRGFIYDHLLAHGLPPSLKVIGDHFSWTTSQAREIVASMKI
                     GKAVVPHPRTGEIWMAGPFAGHRTTFEVHAGNVTWYANCAWDVLGVAAIVGRPAHLRA
                     TCGDCGDILDATVSGTQVEPRDYVAHFLLPAREWYQDLAFT"
     gene            2238..>3156
                     /locus_tag="VLI40_00455"
     CDS             2238..>3156
                     /locus_tag="VLI40_00455"
                     /inference="COORDINATES: protein motif:HMM:NF017081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MASE1 domain-containing protein"
                     /protein_id="HSU95665.1"
                     /translation="MDESSAQWQSNSERSAFPLAWGLLLYVPLVLAGSLIGAMLRYPD
                     LGSAILFPPYAVLTAALIAAPRRDWIWYILLASLTHLIAGVAHWPALFLLLADVANVS
                     RAVIAALLLQRLLGRQPRLDSVPSLLLFVAAAGIVAPTVGAAIGAADVVLFQPSRHYL
                     ETWNAWFISNALTALTMLPFLLSVMRPPTAWRRFSVDPRRLMEGTILGLCLIAVCAFV
                     LVSFKGDRFSLSVALYTPIPLLIWAALRFGPAGVGLALTLATFAAIVGTDRQALATLD
                     ASPDSRVLHLQVFVLLTAGPVMCITVVATA"
BASE COUNT          551 a         1024 c          981 g          600 t
ORIGIN      
        1 acacacgagc agaacacgtc ccaacgttcg tcgctggacc gcgaggtcca gtggctgaag
       61 acgagcatct cgatcgttcg ttgtcgtcat ttgggcctcg agatttccgc acttgtccat
      121 ggagggtcgg ctccatgaac cgtgcgatgc gaggctttgg acgtcagccg gacgaagggc
      181 acgagtgtgt cagggcgcaa gagcgattgc ccaggcatca ctgcggcgtc gactgcctca
      241 tcgatctggc gttgaagcac cgaagacaga gccaggcgtg cgcttcgccg aagacctcga
      301 agacgcgcag ccgatcccgc ggcgccgcgg tgagcatcgc gaagaatcgc gcgccggcat
      361 tcacagcttg tccggccgcg acgacagcca ctgcgcccgc gagctctgcg cggtcccgaa
      421 agcacgcccg tgcgagctct cgaatgcctt cggccgtggg ggagacgaga tacccacact
      481 ccaccaggat gccgaaatcc tgtcggtagg cgggatcgtc ctgaatcgcg cgcaaggcgg
      541 cgacgaccgc gcccggatac cgcacgttga ggagatccac gaacacgatc ccggccgcga
      601 cgtcgatcgt gtagcgcagg gccggacgcg ggcggcccga gacttcacgt gcgccgctgt
      661 gcggcgagga cacggtccgt tgcattgaag ctcccgagcg gtgcggcaga aatgacccgt
      721 tcaggcgacg gcgccttgtg ggtctaggta tcggcggaca cgcaggcaac ttgagcagca
      781 acaatgtttc gagacgaata atgcgagaac tttgtcgagc gttgtcattg cgttctcatt
      841 gtgtcgtcga ggcgagcagc tcacgccacc aggcatccac tcgctggcgg atttgctcga
      901 gcgtgttctc gcggccgtac gcgccaacac tgcggatccg gccatcgctt gtctgcgcga
      961 accacattgc tccactcggc gcgtcgacgc gcacgtcgat ccaacagacg aagaacgtcc
     1021 ggtcgaacac ggtgacgatg acgggatcgt ccggcgtcgg aaagggaatc gtcattcgtg
     1081 ctcgagcgga atgagcatct gctcgggaat ggagagtcgg aagccacgcg cgttcacccg
     1141 cttgatcgcc ggcgcgagcg tcgcgatcgc gggtcccaac ctggcaacgc ggtcctcttc
     1201 agcaacggaa atccggtatt tcccgcacac cgcgcaatcg acgtcgtgtg ccacgtttct
     1261 gtcgtgcgcc cggacgcgaa ccacagcgcg tccacagaac acgcaaacca actctcgctg
     1321 cgccgccatc ggtgcatgat ggcgtctcga ggcctgcatc cgacaggcgc aaagtgcagc
     1381 gacggtgcgg cgatccgtta cagcaaaagg aattgcggat ggaattagag aatcggcata
     1441 cggccgccct cctaggccgg caattcccag aactctcccg tcagcccggc gcgagccagc
     1501 accgcttgac tctcgtcccg cgttcgcgga cgccaatcct cggcgcgcgg atcggagtac
     1561 cacagcttcg ccaactcgga tagctggctc cagccaatca cggcgccgcg ccgccataga
     1621 cgattcgcga cccatcgatc gacatgctct tccgaccgga agaggcagat tgtgtctcac
     1681 gtgaaggcga ggtcctgata ccactcacgc gcggggagca gaaagtgcgc gacgtaatcg
     1741 cgcggctcga cctgcgtccc gctgaccgtc gcgtcgagta tgtcgccgca atcaccgcac
     1801 gttgcgcgga ggtgggccgg gcggcccaca atggcggcta cacccagcac gtcccaggca
     1861 caattcgcgt accaggtgac attaccggcg tgcacttcga atgtcgtgcg atggcctgcg
     1921 aatggacccg ccatccagat ctcgcccgtc cgtggatgtg ggaccactgc ctttccgatc
     1981 ttcatcgacg ctacgatttc gcgggcttgg ctggtggtcc agctgaagtg gtccccgatg
     2041 accttgagtg acggcgggag tccatgcgcg agcaggtgat cgtaaatgaa gccacgtaga
     2101 ttgaacacac gctctgcggc tgaaggtgtc agaagaaggt gtcagaatgg cccggtgtcg
     2161 aaccgactcg ccgtctcgct cctcggcccc gggcgcgata gtatagatcc tgtcgcctgc
     2221 atacataagg aagggtagtg gacgaatcgt cggcgcagtg gcagtcgaat tccgagcgta
     2281 gcgcgttccc cctcgcgtgg gggctgttgc tatacgttcc gctggtcctc gcgggcagtc
     2341 tcatcggcgc gatgttgcgg tatccggacc tcggctcggc gattctgttc ccgccatacg
     2401 cggtactcac cgccgcgttg attgctgcgc cacggcgcga ttggatctgg tacatcctgc
     2461 tcgcatcgtt gacccacttg attgcgggtg tggcgcattg gcccgcgctc ttcttgctac
     2521 tcgccgatgt cgccaacgtc agccgcgctg tcatcgccgc gctcctgctc cagcgactcc
     2581 tcggacgcca gccgcggctc gacagcgttc catctctcct gttgttcgtt gccgccgccg
     2641 gcatcgtcgc gccgaccgtc ggcgcggcga tcggcgcggc ggacgtcgtg ctgttccagc
     2701 catcacgaca ctatctcgag acatggaacg cctggttcat ctcgaatgcg ctgaccgcgc
     2761 tcacgatgct tccgttcctg ctttccgtga tgcggccgcc cacggcatgg cgtcgattct
     2821 cggtggatcc acgccgcctg atggaaggca ccatcctcgg gctctgcctg attgcggtct
     2881 gcgcgttcgt gcttgtgtcg ttcaaaggtg accggtttag tctttcggtc gcgctgtata
     2941 cccccattcc acttctcata tgggccgcgc tgcgattcgg tccagcggga gtcggcctcg
     3001 cgttgaccct cgcgacgttc gcggcaatcg tcggaaccga caggcaggcc ttggcgacgc
     3061 tcgatgcgtc tccggatagc cgcgtgctgc accttcaggt cttcgtgctg ctcactgccg
     3121 gtcctgtgat gtgcattacg gttgttgcca ccgcgc
//
LOCUS       DATIMD010000022         5115 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4628290, whole genome shotgun sequence.
ACCESSION   DATIMD010000022 DATIMD010000000
VERSION     DATIMD010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5115
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4628290"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..733
                     /locus_tag="VLI40_00460"
     CDS             <1..733
                     /locus_tag="VLI40_00460"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU95666.1"
                     /translation="PNTGSTMAAYATAVIAGYQAEIGATGQTIRIVPELRMRFNPTLE
                     SVNLFVPGLIALVLTLITALMTAISLSREKERGTLEILLVSPLHPWQIILGKVMPYLL
                     LALGNVVTALLAAWVVFHVPFRGSLTLLLLSSVLYSMVGLALGVLIAAVTSSQRAAML
                     GALVGTMLPNALLSGMIFPITSLPGWLRAVTYIVPARWFIVISRGIMLKGVGFVYLWK
                     ELAVLTIMLTLLLIAAVRSFKPRLA"
     gene            730..1890
                     /locus_tag="VLI40_00465"
     CDS             730..1890
                     /locus_tag="VLI40_00465"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU95667.1"
                     /translation="MKLRALRFLLRKEFLQIVRDRTILGMLFIMPVIQLLVLANAVTF
                     EVKSARMYVIDKDHSDMSRGVVTRLAASGRFVPTESSPSMTEGDAAMLDRRVDMIVVI
                     PEGFERGIVRDRRAPLQLVFNAEDGAAAGVMQSYANAILTSYAGELGANAGPVLARYV
                     TAGDDPAPVRGHPVIELRRRGWYNSELNYREYMVPGILVVLVTMIGTLLTAMNIVREK
                     EAGTLDQLNVTPIARSTFIAAKLIPLWTFAMIDLAIGLVVARFVFHVPMLGSLVLVFF
                     AATIYLVGALGIGLWISTVADTQQQAMFVTFSLLMVYLLMSGLFTPVRGMPVWAQWTT
                     EINPIAHFVALMRAVLLKGAGMRDVASHLVALAAISSVVLSVAVRQYHKRSA"
     gene            complement(1950..2168)
                     /locus_tag="VLI40_00470"
     CDS             complement(1950..2168)
                     /locus_tag="VLI40_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95668.1"
                     /translation="MSGSMEVLRGVLVRGAVATAHMSALEAQTQVYPPAVHLETFFAP
                     VRRARLYVAHLAEVSAGLRSHGDDLGRR"
     gene            2263..3207
                     /locus_tag="VLI40_00475"
     CDS             2263..3207
                     /locus_tag="VLI40_00475"
                     /inference="COORDINATES: protein motif:HMM:NF039315.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HSU95669.1"
                     /translation="MTAEQKTGAVQADDLWPELKLASWQDSYSTLHMLTQIVGKTRLA
                     LAPMENHWWQVPLYVTERGLTTSAMPYGGNVATVDFDFIYHNVGIRTSAGQTRVIPLV
                     QRPVREFYIEYLDVLAALGIGARIRGVPVEVETAIPFAEDTQHASYDPEAVNRWWRAM
                     VQVDRVLKQFRGRFEGKASPVHFFWGSFDIAATRFSGRGAPLHPGGAPNCPDYVMQEA
                     YSRECSSAGFWPGGGTQEAAFYSYAYPEPDGYRDFHVGPDEAYYDTNMREFILPYDVV
                     RTAPSPDETLLAFLESTYEAAASRAAWDRNSLERRVKQ"
     gene            3204..3761
                     /locus_tag="VLI40_00480"
     CDS             3204..3761
                     /locus_tag="VLI40_00480"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HSU95670.1"
                     /translation="MTDFHTEPSNESPYSGTHRAGDAARAQSSGQLNVTVRELSRDES
                     IAILARHHLGRVGITFHDHLRVKLCNYLYSEHWIYARAELGDDLVMAEHHPWAAFEVD
                     EIDGILDWRSVEVRGAIEFLSSDLHSPDWFEFENAVRLLRSAVPEILRAGDPMPQSIH
                     LVRIHVDEIAGRESRVGNPRPLPQP"
     gene            3810..>5115
                     /locus_tag="VLI40_00485"
     CDS             3810..>5115
                     /locus_tag="VLI40_00485"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HSU95671.1"
                     /translation="MHTDVAPPRHARAHVRHDPDAGRSIMDQAISRAAGARRIDGNSV
                     RLLRDAAENYPAWLDAIASAERYVYFEAYIMRDDVSGRRFAEALIDKARAGVTVRLMY
                     DWMGAFAKTPSHFWESLRAAGIEVRCFNPFTFASPLGWVHRDHRKSVVVDGRVGYITG
                     LCVGDAWVGDPERGIAPWRDTGVEVRGPAVAEIAGAFSRVWAVVGAPIPPDELTDREA
                     IAIAGDTSVRVVASEPWRARLLRLDELVAGAARETLWLTDAYYAGMPTHVQALRAAAK
                     DGVDVRLLVPGGTDIPLLRPLSQAGYRPLLEAGVRVFEWNGPMMHAKTSVADGRLARV
                     GSSNLNIASWLGNYELDAVIEDTVFAECMVQSYLDDLSHATEVVLRGRRRSAASPDAL
                     PGAPPKRTRERRKGSGSAGRGVAGAIRLGNTVTAAVTDRRVLA"
BASE COUNT          907 a         1517 c         1662 g         1029 t
ORIGIN      
        1 tccgaatacc ggaagcacca tggccgcata cgcgactgcc gtaatcgcgg gttatcaggc
       61 cgaaatcggt gccacgggac agacaatccg gatcgttccc gagctgcgaa tgcgattcaa
      121 tcccacgctg gagagcgtga atctgttcgt gcccgggctc atcgcacttg tactgacgct
      181 cataacggca ctcatgaccg cgatctcgct atcgcgcgag aaggagcgcg gcacgctcga
      241 gatattgctg gtgtcgccgc tccatccctg gcagatcata ctcggcaagg tcatgccgta
      301 tttactgctg gctcttggca acgtagttac ggcgctgctc gccgcctggg tcgtattcca
      361 cgtaccgttt cgcgggagtc tcacgctact gctgttatcg agcgtgctgt actcgatggt
      421 agggctcgca ctcggagtac tgatcgcggc cgtgacgtcg tcgcagcgcg cggcgatgct
      481 tggcgcgctc gttggtacca tgttgccgaa tgcactgcta tccggaatga tattcccgat
      541 caccagcctg cccggttggc tgcgtgcggt gacgtatatc gttccggcgc gctggttcat
      601 cgtgatctct cgcgggatca tgctcaaggg cgtgggcttt gtctacctgt ggaaggaact
      661 ggcagtgctc accatcatgc tcacgctgct gttgatcgct gcggtgagaa gcttcaagcc
      721 gaggcttgcg tgaagttgcg agcgctgcgc tttctgctgc gcaaggagtt tctgcagatc
      781 gtgcgtgacc gcacgatact cggcatgctg ttcatcatgc cggtgataca gctcctggtg
      841 ctcgcgaacg cggtgacctt cgaggtgaag agtgcgcgca tgtatgtaat cgacaaggat
      901 cacagcgaca tgtcgcgcgg tgtggttacg cggctggctg cgtccggacg gttcgtgccg
      961 acggaatcat cgccatccat gaccgagggg gacgcggcga tgctggatcg cagggtcgac
     1021 atgatcgtcg tgattccgga ggggttcgag cgtggaatcg tgcgcgatcg tcgtgcgccg
     1081 ctgcaactcg tgttcaacgc cgaggatggc gcggcggccg gtgtgatgca gtcgtatgcg
     1141 aacgcgatcc tgacgagtta cgcgggtgag cttggtgcga acgcgggtcc agtgctcgcg
     1201 agatacgtaa ccgcgggcga tgatccggca cccgtgcgcg ggcatccagt gatcgagctg
     1261 cgccgacgcg ggtggtacaa ctccgagctg aattatcgcg aatacatggt gcccggaatt
     1321 ctcgtcgtgc tcgtcacgat gatcgggaca ctgttgacag ccatgaacat cgtgcgcgag
     1381 aaggaagccg gcaccctcga tcagctcaat gtcaccccca tcgcccgatc gaccttcatt
     1441 gcggcgaagc tgataccgct gtggaccttc gcgatgatcg atcttgcgat cggtctcgtg
     1501 gtggcacggt tcgtctttca cgtgccgatg ctcggcagcc tcgttctggt tttcttcgcg
     1561 gcgacgatct acctcgttgg cgcgcttggc atcggactct ggatttcgac ggttgcggac
     1621 acccagcagc aggcgatgtt cgtgacgttc tcgctattga tggtctatct cctgatgagc
     1681 ggtctgttca cgccggtgcg ggggatgccg gtatgggcgc aatggaccac cgagatcaac
     1741 cccatcgcgc acttcgtggc actgatgcgc gcggtgctgc tcaagggtgc cgggatgcgc
     1801 gacgtcgcct cgcatctcgt cgccctcgct gcgatcagct cggtggtact cagcgtcgcc
     1861 gtacgccagt atcacaagcg ctcggcctga attccggcgg gcgcgcgtct tgctccagtt
     1921 cgagccgccg gctgtatatt gagaaagtac tatctgcgac cgaggtcgtc tccatggctt
     1981 ctcagacctg cactcacctc ggccaggtgc gcgacgtaga gccgcgcacg ccgaacgggt
     2041 gcgaagaatg tctcaagatg cacagcgggt gggtacacct gcgtctgtgc ctcgagtgcg
     2101 gacatgtggg ctgttgcgac agctccccga acaagcacgc cacgaagcac ttccatgcta
     2161 ccggacatcc gatcatccgc tctttcgagc ccggtgagga ttggggctgg tgttacgtcg
     2221 acgagacgat gttcgagcct gcgccgcacg cgcagtgata ccgtgacggc ggagcagaag
     2281 acaggggcgg tacaggcgga tgacctgtgg ccggagctga agctggcgtc gtggcaggac
     2341 agctattcaa ctctccacat gctgacgcag attgtcggca agacgcggct cgcccttgca
     2401 ccgatggaga accactggtg gcaggtcccg ctctatgtaa cggagcgtgg actcacgacc
     2461 agcgcgatgc cgtacggcgg aaacgtcgct acggtggatt tcgacttcat ctatcacaac
     2521 gtcggaataa ggacgagcgc ggggcagaca cgcgtaattc cgctcgtgca acgccccgtg
     2581 cgcgaattct acatcgagta tctcgacgtc ctcgccgcac ttggcattgg ggcaaggatc
     2641 agaggggttc ctgtcgaggt tgaaaccgcg attccgttcg cggaggatac gcagcacgcg
     2701 tcatacgatc cggaagccgt gaatcgatgg tggcgtgcaa tggtccaggt ggaccgcgtg
     2761 ctcaagcaat tccgtgggcg tttcgaggga aaggctagcc ccgtgcactt cttctgggga
     2821 agcttcgaca tcgccgcaac caggttttcg ggacgcggcg cgccgctgca tccgggcggt
     2881 gctcccaact gtcccgatta cgtgatgcag gaggcgtact ccagggagtg cagcagcgcc
     2941 gggttctggc ccggaggtgg tacccaggaa gcggcgttct attcgtatgc gtatcccgag
     3001 ccggatggct acagagattt ccacgtaggg cccgacgagg cttactacga tacgaacatg
     3061 cgagaattca tcctgccgta cgacgtggta cgtaccgcgc cgtcacccga cgaaacgttg
     3121 ctcgcgtttc tcgagagtac ctacgaggca gcggcaagtc gtgccgcatg ggatcgcaac
     3181 tcactggaac gaagggtcaa gcaatgacag acttccatac tgaaccatcg aatgagtcgc
     3241 cgtattccgg cacacatcgc gccggtgatg cggcgcgagc gcagagctcc ggccaattga
     3301 acgtcaccgt tcgtgagttg tcgcgcgacg agtccatcgc aatcctcgcc cggcatcacc
     3361 tgggtcgcgt gggcatcacc ttccacgacc atctccgtgt caagctatgc aactacctgt
     3421 attccgaaca ctggatatac gcgcgcgcgg agctcgggga cgacctggtg atggccgaac
     3481 atcatccgtg ggcggcgttc gaggtggacg agatcgacgg catccttgat tggcgctccg
     3541 tcgaggtcag gggtgcgatc gagtttctct catccgacct gcattcgccc gactggttcg
     3601 aattcgaaaa tgcggttcgc cttctcagat ccgctgttcc ggagatactc agagcaggcg
     3661 atccgatgcc gcagagcatt cacctggttc gtatacacgt ggacgagatc gccggtcgcg
     3721 agtcgcgggt cggaaatcca agaccgctcc cgcaaccctg actgcgatga agcgcatcgc
     3781 agccgttgca cggtcgtgag acgctaggaa tgcacaccga cgtcgcaccg ccgcgccacg
     3841 cgcgtgcaca tgttcgtcat gaccctgatg cgggccggtc gatcatggat caggcgatct
     3901 cgcgcgcagc gggtgcgcgg cggatagatg gcaacagcgt ccggctcctg cgtgacgcgg
     3961 ccgagaatta tcctgcgtgg ctcgatgcga tagcatccgc cgagcggtac gtgtatttcg
     4021 aagcgtacat catgcgcgat gacgtgtcgg gccggcgctt cgccgaagcg ctcatcgaca
     4081 aggcgcgtgc aggtgtaacc gtgcgactga tgtacgactg gatgggcgcc ttcgccaaga
     4141 cgccgtcgca tttctgggaa tcgctgcgcg ccgccggcat cgaggtccgc tgcttcaatc
     4201 ccttcacttt cgcgagtccg ctcggctggg tccatcgcga tcacagaaag agcgtcgtcg
     4261 tcgatgggcg agtcggatac atcacaggtc tctgtgttgg cgatgcgtgg gtcggtgatc
     4321 cggagcgtgg cattgcaccc tggcgtgata cgggtgtcga ggtccgcggt cccgcggtcg
     4381 ccgagatcgc gggcgcattc agccgcgtat gggccgtggt cggcgcgccg attccacccg
     4441 atgagctgac cgatcgcgag gccatcgcga tcgcaggtga cacgtcggtg cgtgttgtgg
     4501 cgagcgaacc ctggcgcgcc cggttgctgc ggctcgacga gctcgttgcc ggagccgcgc
     4561 gcgagacgct ctggctgacc gatgcatact acgcaggcat gccgacgcac gtgcaggcgc
     4621 ttcgcgccgc ggcaaaggat ggcgtcgatg tgcgtctgct ggtccccggt ggcactgaca
     4681 tcccgctact gcgtccgctg tcgcaggcgg gttacaggcc attgctcgag gctggagtgc
     4741 gcgttttcga gtggaatggt ccgatgatgc acgccaagac gtcggtcgcg gacggtcgcc
     4801 ttgcacgtgt cgggtcgagc aacctcaaca tcgcgagctg gctcgggaat tacgagctcg
     4861 atgcggtgat cgaggacacc gtgtttgcgg aatgcatggt gcagtcgtac ctggacgatc
     4921 tttcgcacgc gactgaagtt gtcctgcgcg gacggcgccg cagcgccgct tcacccgatg
     4981 cgttgccggg tgcgccgccc aagcgtacgc gtgagcggag aaaggggtcg ggtagtgcag
     5041 gccgcggcgt cgccggcgct attcgactcg gcaacacggt taccgcagcg gtgactgaca
     5101 gacgtgtgct cgcct
//
LOCUS       DATIMD010000023         3543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4339755, whole genome shotgun sequence.
ACCESSION   DATIMD010000023 DATIMD010000000
VERSION     DATIMD010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3543
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4339755"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            542..2542
                     /locus_tag="VLI40_00490"
     CDS             542..2542
                     /locus_tag="VLI40_00490"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HSU95672.1"
                     /translation="MFAVPLLLIVMLASPIASAQASFDVMEATIDDIQNAIRSRRITA
                     TELVNLYLQRIKAYNGVCVNQPQGILGPISTIPHAGKVNALITLNLRPATREALGFDA
                     RKARSMTDLVDNSPNVPDALETAAALDAQFAATGTFAGPLHGVVLAIKDQYDTYDMRS
                     TAGADAAYANDRPPKDATFVTRLRAAGAIILAKANMGEYASGGVPGTRSSFGGTLCNP
                     YDTERDPGVSSGGSGISVSTNMVTCAIGEESGTSVRMPAKNNSAVGLAPTRELVSAQG
                     MIQRGIVTRVGPICRTVKDVARILDVYAGFDPGDELTGFSRDRLPPQPYSAYADATRL
                     DGMRIGVIREYMRKDLFTAADYESIDLVDKAIQDLQALGATVIDPGPTGALFQGCVDK
                     AVPAWRNRYFTAQFPLLFPANTDLIPVLAAMYLNPAIVPHTSTGQPSIRNLGPTAGDA
                     GDAKYNLDVYLAQRGDPNIRNITDILTKSNFWTDPVIPNLQGSLTSSNADLVFANQGA
                     LQTRFAMQVAVFKCFADMKLDAVVYPTSSVPPAILTAPREPTVNDRPSTVWTQINSRG
                     FPAMTVPAGFTTSVYDRDANSNLVGPIPARLPVGIDILGLPFSEPKLFQIASAYEAAT
                     HHRVPPPDFSALGVQPKRATAPRPMPAPRTLRPDELREIKPN"
     gene            2687..>3543
                     /locus_tag="VLI40_00495"
     CDS             2687..>3543
                     /locus_tag="VLI40_00495"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HSU95673.1"
                     /translation="MAFLTSIFLCLSAFGATAETAAPDVANFQVVEATINDIQQALLS
                     RQLTSVQLVNLYLQRIKAYNGTCVNEPQGILGPVTTIPHAGQINALMTLNLRPARRIA
                     LGFDMHHARSQTDLSDDDGAMLDALEFASKLDRFVAMTGRLVGPLHGVVFAIKDQYDT
                     YDMRTTSGATAFYANDRPPTDATVVQRLRAAGAIILAKANMGEYASGGRSGWGGTNCN
                     VYDTQRASGGSSAGSGTAVSANLVTCAIGEETGGSILNPSRNNGIVGIPPTRELVSAS
                     GMIQQGLNTR"
BASE COUNT          697 a         1176 c         1036 g          634 t
ORIGIN      
        1 aaagtgaacg taccagtgat atcgcggccc ttgtgtccct gcgtggggac gacctgtcct
       61 tttgcagcct agccgacacc gcgcgatctc ggaaatgtcg ccgcaacgcc atcgtcttgc
      121 acagcctgtt ccgcgaacag attaggcggt aagcatccta agtcaacggg agttggagcg
      181 ctggtaagac gtaggtacga cctcgcatgc gcattgcgcc gcgaactcag tgcgcaccaa
      241 ttcgacacga atcgacaggc gaacgtccca tgttgatgcg gcgcgcacgg gcaagactcg
      301 aggtcggtcg cgcataacca tgtcttaggt ttgttgttat caaccactta tgcattcttg
      361 gatctgcttg gcccgatgct tgcattgtag cccgcagagt tgcctcgagt gctgcaacct
      421 cgcgcttcca gtctcaccag tgctctcatc tcatcacacc caatcaggta ggcagtgata
      481 catgactaat tacgttcatg gcggaagaca agtgcggcgg cggagccgat gcgttgccat
      541 cttgttcgcg gtacccctgt tgctgatcgt gatgctcgca tcaccgattg cctctgcgca
      601 ggcgagcttc gacgtcatgg aagcgaccat cgacgatatc cagaatgcca tccggtcacg
      661 aaggatcacg gcgacggagc tcgtcaacct ttatcttcag cgcatcaagg cctacaacgg
      721 tgtgtgcgtc aatcagcccc agggcatcct cgggccgatc tcgaccattc cccacgccgg
      781 caaggtcaac gcgctcatca cgttgaacct gcgtccggcg acgcgagaag ctttgggctt
      841 cgacgcgcgc aaggcgcgaa gcatgacgga cctggtcgac aatagcccca acgtgccaga
      901 cgcgctcgag accgcagcgg cgctcgacgc gcaattcgct gcgaccggca cgttcgcagg
      961 accgctccac ggggttgtcc tggcgatcaa ggaccagtac gacacctacg acatgcgtag
     1021 caccgccggc gcggacgccg cctatgcgaa tgaccgaccg cccaaggatg cgaccttcgt
     1081 gacgcgtctg cgcgcagccg gggcgatcat cctggcgaag gcgaacatgg gtgagtacgc
     1141 atcgggcgga gtgccgggca cgcgcagctc gttcggcgga accctctgca atccctacga
     1201 caccgagcgt gatcccggtg tatcgagcgg tggctcgggc atatccgtgt cgaccaacat
     1261 ggtgacctgc gcaatcggcg aggaatccgg cacgtccgtg cgcatgcctg ccaagaacaa
     1321 cagcgcggtc gggctcgcgc cgacgcgcga actcgtcagc gcgcaaggga tgatccagcg
     1381 gggcatcgtc acgcgcgtcg gtccgatctg ccgaacggtg aaggacgtgg cgcgcattct
     1441 cgacgtgtat gcgggcttcg accccggcga cgagctcaca ggcttcagcc gcgaccggct
     1501 gccgccgcag ccctactccg cgtatgccga tgcaacccgc ctcgacggca tgcgcatcgg
     1561 cgtcattcgc gagtacatgc gcaaggacct gttcaccgcg gcggactacg agagcatcga
     1621 tctcgtcgac aaagccattc aggacctgca ggcgcttggc gctaccgtca tcgatccagg
     1681 tccgaccggc gcactgttcc agggctgtgt cgacaaggcg gtacctgcgt ggcgtaaccg
     1741 ctatttcacc gcgcagtttc ccctgttgtt cccggcgaat acagatctca ttccggtgct
     1801 cgccgccatg tacctcaatc cggcaatcgt tccacatacc agcacggggc agccgagcat
     1861 ccgcaacctc gggccgacag cgggcgacgc aggcgatgcc aaatacaacc tcgatgtgta
     1921 tctcgcgcag cgcggagatc cgaacatccg gaacatcacc gacatcctca ccaagtcgaa
     1981 tttctggaca gatccggtga tcccgaacct gcagggttcg ctcacgtcgt cgaacgcgga
     2041 tcttgtcttt gccaatcagg gtgcgctcca gactcgcttc gccatgcagg tcgcggtctt
     2101 caagtgcttc gccgacatga agctcgatgc cgtggtgtat cccaccagca gcgtgccgcc
     2161 ggcgatcctg acggctccgc gcgaacccac cgtcaacgac cggccctcca ccgtctggac
     2221 gcagatcaac agcaggggat tccccgcgat gacggtaccc gccggattca cgacttcggt
     2281 ctacgatcgt gatgcgaact ccaatctcgt agggccgatc cctgccaggt tgcccgtggg
     2341 catcgacatt ctcggcctgc ccttcagcga gccgaagctg ttccagattg catccgccta
     2401 tgaggcggcc acccatcacc gcgtgccgcc gcccgatttc agcgccctgg gtgtccagcc
     2461 caagcgcgca acagcgccgc gtccaatgcc ggcaccgcgc acattgaggc cggatgaact
     2521 gcgcgagatc aagccgaact gaggtccgct gcccagcgag tagatcaaag ccagcgtaca
     2581 catcggctct cccactcacc gtatataccg tcaaaccgtg caaagcagga ggttgtccgt
     2641 gctgcatccc tacaaagcca aacttcgtgc acgccacatt caaggcgtgg cgtttctcac
     2701 ctcgatcttt ttgtgtctct cggcgttcgg cgcaaccgcc gaaacggccg ctcccgacgt
     2761 ggcgaacttc caggtcgtgg aggcaacgat caacgatatc cagcaggcgc ttctctcgcg
     2821 ccagctcacg tcggtgcaat tggtcaacct ctatctccaa cgcatcaagg cgtacaacgg
     2881 aacgtgcgtg aacgagccgc aagggattct cggccccgtc acgacgattc cgcacgcagg
     2941 acagatcaac gcgctgatga ccttgaacct gcggccggcg aggcgcatcg cgttgggttt
     3001 cgacatgcat cacgcgcgta gccagacgga tctctccgat gacgatgggg ccatgctcga
     3061 tgcgctcgag ttcgcctcca agctggatcg gtttgtcgcg atgacgggac gccttgtcgg
     3121 tcctctccac ggcgtcgtct tcgccatcaa ggaccagtac gacacctacg acatgcgcac
     3181 gacgtcgggc gcaaccgcgt tctacgccaa cgaccggccg ccgacggacg cgaccgtcgt
     3241 ccagcggctg cgtgccgcag gcgcgatcat tctggccaag gcgaacatgg gtgaatacgc
     3301 gtcgggcgga cgcagcggct ggggcggtac caactgcaat gtctacgaca cgcaacgcgc
     3361 gtcaggcgga tccagcgccg gctccgggac ggcggtttcg gcaaacctcg tgacgtgcgc
     3421 aatcggcgag gagaccggcg gttcgattct caatccctcc cgcaacaacg gcatcgtcgg
     3481 catcccgccg acgcgcgaat tggtgagcgc gagcggcatg atccagcagg gcctcaacac
     3541 acg
//
LOCUS       DATIMD010000024         4853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4628857, whole genome shotgun sequence.
ACCESSION   DATIMD010000024 DATIMD010000000
VERSION     DATIMD010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4853
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4628857"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..224
                     /locus_tag="VLI40_00500"
     CDS             <1..224
                     /locus_tag="VLI40_00500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95674.1"
                     /translation="SVVLGLLSYFNRIRSERVKAVTMAVLAVGALVVYATVVRAHGIP
                     QDTVVISSQTLNGIIQTVAETIPLGSSTI"
     gene            266..562
                     /locus_tag="VLI40_00505"
     CDS             266..562
                     /locus_tag="VLI40_00505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95675.1"
                     /translation="MSLLYFRWLLLALSGLALLTGVAMHGLVRRLMLPRIVDASQSQN
                     GIPSHALRLFSVMIGRAWVFRIYHLCFAVLFLAAWWYFGTTAGNVAWTQLITHS"
     gene            567..1871
                     /locus_tag="VLI40_00510"
     CDS             567..1871
                     /locus_tag="VLI40_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95676.1"
                     /translation="MTYRDVSRSRSGTDSMMRIVRLFVFLAAVMAPHVATAQSSYLFV
                     WAGGSGPAASDFVATIDANPASRSYGRVVASVPTGSLGMPHHTEQELGPNGHLLANDF
                     PAGRTWLFDLHDPLKPRIITSFGDVAGFSHPHTFSRLANGHVLTTFQYRADATTEKQM
                     RSPTGGMAGMTSSLPNVTGGLVEMDERGKPLMSASAADPSIKDHFIYPYSVLPMPGID
                     RAVSTTTDMNPGDTVATSQWVQIWRLSDLKLLRTIALPPGSGTHIKANEFTGEPRLLA
                     DGRSVYIHTFNCGLYLLSNVAGSAPAAKLVHAFDGSDCGVPVLTSHYWIQTVPADHGL
                     VTLDVSDPEHPREVSRVSVGADEQPHWIAIDHTGRRIVLNSGGKGNRLFIINFDPANG
                     RMAVDSAFRDSGNTKPGISLAGANWPRGFNGNVVPHGVVFSR"
     gene            complement(1872..2801)
                     /locus_tag="VLI40_00515"
     CDS             complement(1872..2801)
                     /locus_tag="VLI40_00515"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSU95677.1"
                     /translation="MKIFVTGATGVVGRRAVPLMIAAGHNVTAAGRSREKLAALERTG
                     ASVVALDLFDAQAVERAVEGHDTIVNLATHMPSSPFRMILPWSWKENDHVRREGSRVL
                     VDAALRVGATRFIQESFAPLYPDSGDRWIEEATPLQPTPYNRTVVDAEQSAERFTSGG
                     GTGIVLRFAGLYGPDALTQQMIDTVKKGWSPLPGSPAAYFSSVAQSDAASAVVASLDV
                     PTGVYNVVDDEPLSRRDICGSLASYLGVRQPRFLPTWLTRHMGSIVECMSRSQRISNR
                     KIRAATNWRPQYVSIRDGWRAVLEELKIGASAS"
     gene            2972..3832
                     /locus_tag="VLI40_00520"
     CDS             2972..3832
                     /locus_tag="VLI40_00520"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HSU95678.1"
                     /translation="MRHLLASSIVVAAICAAGLGAQSAAPVAVISLEPYQDNPEFLTV
                     RASVKGHDRTFAFDSGEGVSMISPELAQAIGCKPWGQVTGFRMNGERIDAPHCDDVTF
                     DAAGQHFAAPSVIVFDLMKFFKPGQPRLDGSLGFDLFAGHAITFAFSSRSIVVESPAS
                     LAARVANGTEVPIRIVRDAEGLALTVDVGVPTPDGMAWMELDSGGGSSIIIGKHVASL
                     FKMDPDSKAMQQVSFTLAGKIPVTAPARVMDHMIMDGNINVPFLKKWDVTLDFARGRA
                     WVAPAEADQH"
     gene            complement(3854..4450)
                     /locus_tag="VLI40_00525"
     CDS             complement(3854..4450)
                     /locus_tag="VLI40_00525"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HSU95679.1"
                     /translation="MNHAPAVAAVILAAGAATRFGAPKQLAMYRGELLLARAIRHARE
                     ARVSHTIVVLGAYAETILPAIGDLDNVVIVINDDWHSGIASSLRTGIAEAMTRSIDGV
                     LFMTIDQPLVDASVLSRLIDAFRTGRAIAAAEYDGVTGVPALIGREHLTDLARTVTGD
                     RGAAGWLRSHDSSVTRVSLVREGIDVDTTEALRAIEQV"
     gene            complement(4455..>4853)
                     /locus_tag="VLI40_00530"
     CDS             complement(4455..>4853)
                     /locus_tag="VLI40_00530"
                     /inference="COORDINATES: protein motif:HMM:NF024869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HSU95680.1"
                     /translation="LVAECASPEHLADSVALTERSAIVVMSHNYARDIEYMNAALQSP
                     APYVGMLGPRRRTERMFDDLNARGEPVEDAALARLHAPIGLDIGGDSPEAIALSITAE
                     ISAVMNARNGGMLRDRRAPIHDSAAVPSLL"
BASE COUNT          968 a         1434 c         1439 g         1012 t
ORIGIN      
        1 tgtcggtagt gctcggattg ctatcgtatt tcaatcgaat tcggtcggaa cgagtgaagg
       61 cagtcaccat ggcggtgctt gcagttggcg cgctcgtcgt gtacgccacg gttgtgcgcg
      121 ctcatggaat tcctcaggac acggtagtca tttcctcgca gacactcaat ggcatcatcc
      181 agactgtggc ggagacgata ccacttggga gctcgacgat ctgatggtga gcactcatcg
      241 atatctctga tctgatatca agtcagtgtc tctcctgtac tttcgatggc tcctgcttgc
      301 gctatccggt cttgccctgc tgaccggtgt cgcgatgcac gggttggtgc gccgcttaat
      361 gctgccgcgc atcgtggatg catcacaatc gcagaacgga attccgtcac atgcgttgcg
      421 gctgttcagc gtaatgatcg gtcgtgcatg ggtttttcgt atctaccatc tgtgtttcgc
      481 agtcctgttc ctggctgcat ggtggtattt cggcactacg gctgggaatg ttgcgtggac
      541 acagctcatc acccattcat aaaaacatga cataccgtga cgtcagtaga agcagatccg
      601 gcaccgactc catgatgaga atcgtgcgac tgttcgtgtt cctcgccgct gtcatggccc
      661 cgcatgttgc cacggcgcag tcctcctatc tattcgtgtg ggccggcgga agcggaccgg
      721 ccgccagcga cttcgtcgcg acgatcgacg ccaatcccgc atcgcggagt tacgggcgcg
      781 tggtcgcaag tgtgccgacc ggcagtctcg gaatgccgca tcacacggag caggagcttg
      841 gaccaaacgg ccaccttctc gcgaatgact ttcctgccgg acgtacgtgg ctgttcgacc
      901 tgcacgaccc actgaagccg cggataataa cgtcgttcgg tgacgtggct ggtttcagtc
      961 atccgcacac gttcagccga ctcgcgaacg ggcacgtact gacgacgttt cagtatcgcg
     1021 ccgacgctac taccgagaag cagatgcgaa gccccaccgg tggcatggcc ggcatgacga
     1081 gctcgctgcc gaatgtgaca ggtggtctgg tagagatgga tgagagggga aaaccgctca
     1141 tgtctgcgag cgccgcagat ccgtcgatca aggatcactt catctaccca tatagcgtgt
     1201 tgccaatgcc cggcatcgat cgcgccgtgt cgacgaccac cgacatgaac cccggcgaca
     1261 cggtggcaac gtcgcaatgg gtgcagatct ggcgtctgtc cgatctcaaa ctattgcgca
     1321 ccatcgcact tccgccgggt tccggcacgc acatcaaggc aaacgagttt acgggtgagc
     1381 cgaggctgtt ggccgatggc cggagcgtat acatccacac attcaattgc ggattgtacc
     1441 tgctcagcaa cgtggcaggc tcggcgccag cagcaaagct cgtgcacgcg ttcgacggaa
     1501 gcgactgcgg tgttccggtt ctcacgtcgc actactggat ccagaccgtg ccggcagacc
     1561 acggactcgt cacactcgat gtaagcgatc ctgagcatcc gcgtgaagtc tcacgcgtga
     1621 gcgtcggcgc tgacgagcaa ccgcactgga tcgcgatcga tcacacaggc agaagaatcg
     1681 tgttgaattc aggcgggaag gggaaccgac tgttcatcat caacttcgat cccgcaaacg
     1741 gacgcatggc agtcgacagt gcattccgtg attccgggaa caccaagcct ggaatcagcc
     1801 tggctggtgc aaactggccg cgcggcttca acggaaatgt agtgccgcac ggggtggtgt
     1861 tctcccggta gtcaggaagc gctggcgccg atcttcaact cctccaacac tgcgcgccat
     1921 ccgtcacgta tgctcacgta ctgaggtcgc cagtttgtag cggcgcgtat ctttcggttg
     1981 gatatacgct gtgatcggct catgcattcc acaatcgatc ccatgtgtct ggtcagccag
     2041 gtgggaagga atcgcggctg cctgactcct agatacgacg cgagcgagcc gcagatgtct
     2101 cgacgcgaaa gcggttcgtc gtccactacg ttgtagacac cggtcggaac gtcaagcgat
     2161 gcaacaacag cggatgcggc atcgctctgc gcaacggatg agaagtacgc tgcgggactt
     2221 cccggaagtg gcgaccatcc ctttttcacc gtgtcgatca tctgctgtgt gagcgcgtcc
     2281 ggcccataca gtccagcaaa tcggagcacg attccagtcc cgccacccga tgtgaagcgt
     2341 tccgccgact gctcggcgtc aactactgtg cgattgtatg gcgtaggttg cagcggcgtc
     2401 gcctcctcga tccagcgatc gccggaatcc ggatatagcg gcgcgaacga ttcctgaatg
     2461 aaacgtgttg cgccgacgcg tagggcggca tcgacgagaa ccctggaacc ttcgcgccga
     2521 acatggtcgt tctccttcca tgaccacgga aggatcatcc tgaaggggga cgacggcatg
     2581 tgcgtcgcga gattcacgat cgtatcgtga ccctccactg cccgctcgac agcttgcgcg
     2641 tcgaagagat cgagtgcgac gacagatgcg ccagttcgct cgagtgcagc gagcttttcc
     2701 cgtgagcggc cggcggcggt gacgttgtgt ccggcggcga tcatcaatgg aaccgcgcgc
     2761 cgtccgacga ctccggtagc tccagtaacg aatatcttca taatccgatt cgtcagcgat
     2821 atgccattac ataatcggaa tatctaacag cccgggattg aatggtagtg ccgccgatgc
     2881 acaaccttcc gtggcattct gctgtccaag agagagagca ccgattcatt atcggtgtgt
     2941 caacgtgaaa acaatcacag ttcgattgaa catgagacat ctgcttgcat cttccatagt
     3001 tgttgcagcc atctgtgctg ctggccttgg cgctcagtct gccgctccgg tggccgtaat
     3061 cagtctcgag ccatatcagg acaatcccga gttcctgacc gtgcgcgcga gcgtgaaagg
     3121 tcacgaccgc acgttcgcat tcgacagtgg cgaaggcgtc tcgatgatca gccccgaact
     3181 tgcgcaggcg atcgggtgca agccgtgggg acaggtcacc ggctttcgca tgaatggtga
     3241 gcgaatcgac gctccgcatt gcgacgacgt caccttcgac gctgccggtc agcactttgc
     3301 ggcaccgagt gtgatcgttt tcgacctgat gaaattcttc aagccgggcc agccacgtct
     3361 ggatggatca ctggggttcg atctgttcgc gggacacgca attacattcg cattttcaag
     3421 caggtcgatc gttgtcgaga gtccggcaag cctcgccgct cgcgtcgcga acggaacgga
     3481 agtgccgatt cgcatcgtcc gtgacgccga aggcctcgcg cttaccgtgg acgtcggtgt
     3541 gccaactccg gatggaatgg cgtggatgga gcttgactcg ggcggcggca gttcgatcat
     3601 aatcggaaag catgtcgcct cgctcttcaa gatggatccg gactcaaagg ccatgcagca
     3661 ggtgagcttt acacttgccg gaaagattcc tgtgacggct ccggctcgcg tgatggatca
     3721 catgatcatg gatggaaaca tcaacgttcc gtttctcaag aaatgggacg tcacgctcga
     3781 tttcgccagg ggacgcgcgt gggtcgcgcc tgcagaagct gatcagcact gaactctgtc
     3841 gtacggccgg attctacact tgctcgatcg cacgcagcgc ttctgtagta tccacgtcga
     3901 ttccttctcg cacgagcgat actcttgtca cactggagtc gtgcgagcgc agccaccccg
     3961 ccgcgccacg gtcaccggtg acggtgcgtg cgagatcggt gagatgctcc ctgccgatca
     4021 atgccggaac tccggtcact ccatcgtatt cggcggctgc gatcgctcga cccgtgcgga
     4081 atgcgtcgat caagcgagag agcacgctcg catcgacaag cggttggtcg atcgtcatga
     4141 acaggactcc atcgatcgaa cgcgtcatcg cctcggcgat tccagtgcgc agtgatgatg
     4201 cgattccaga gtgccagtcg tcgttgatga caatcacaac gttgtcgaga tcgccgatcg
     4261 ccggtaaaat cgtctctgca tacgcgccga gcacgacgat ggtgtgcgat acccgcgcct
     4321 cgcgcgcatg acggatcgcg cgagcaagta gcagctcgcc gcggtacatc gcgagctgct
     4381 ttggcgcgcc gaagcgcgtc gccgcgccgg ccgcgagtat gacagctgcg accgctggcg
     4441 cgtgattcat ataatcacaa aagtgatggt acggctgcgg agtcgtgaat cggcgcacgc
     4501 cggtcgcgca gcatgccgcc atttctggca ttcatcaccg ccgaaatctc tgccgtaatg
     4561 gacagggcga tcgcttcggg gctgtcgcca ccgatatcca ggccgatggg agcatgcaat
     4621 cgcgcgagag cggcatcttc taccggttcg cccctggcgt tcaggtcgtc gaacattcgt
     4681 tcggtacgcc gtcgcgggcc aagcatgccg acataaggcg ccggcgactg cagcgccgcg
     4741 ttcatgtatt cgatgtcgcg cgcgtagttg tgcgacatca cgacaatcgc gctgcgttcg
     4801 gtcagcgcca cgctgtcagc caggtgctcc ggactggcgc attcggccac gag
//
LOCUS       DATIMD010000025         6116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3473625, whole genome shotgun sequence.
ACCESSION   DATIMD010000025 DATIMD010000000
VERSION     DATIMD010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6116
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3473625"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(222..959)
                     /locus_tag="VLI40_00535"
     CDS             complement(222..959)
                     /locus_tag="VLI40_00535"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSU95681.1"
                     /translation="MTPVYVTILVLAVLFLATLIRSAFGFGEALIAVPLLALLLPVTV
                     AAPVAVLTSITVAAIVLIQDWSEVHMRSAGWLVLSTFFGIPLGLLLLTRVPEPVVKTA
                     LAIVIIAFSTYSLSSARKFVLRSDRSAWLFGFVAGILGGAYGMNGPPLVVYGTLRAWS
                     PRHFRATLQGYFLPASVMVMIGYWVAGLWTPTVTHYYVLSLPAVLIAIFAGRYLNRRM
                     HGPQFLLYVHAGLVVIGATLAIQALRA"
     gene            1073..2260
                     /locus_tag="VLI40_00540"
     CDS             1073..2260
                     /locus_tag="VLI40_00540"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU95682.1"
                     /translation="MTVSVETESHSPEAQSGQAKKLDAVGRLASRVAHDFNNILTVIH
                     GCSDFLAASLTEDDPRRADAVMIREASARAAGLTAQLLSFATNQAAESAVVDLNACIT
                     ALQPRVIREVGDAIVLTIDLAPDIGRVSVDPGRLECAILDMAANARDAMPNGGGLLLT
                     TRSYFVTEADIRRHPEATPGPHVRLSISDTGRGMDDATLARIFEPFFTTKEPRGLGLA
                     LATVYGMTRQASGHMSVKSAPGAGTKFDILLPVVEGAANTSPGPAADGRPGQGREVIL
                     IVEDDAGVLSLASRMLTDDGYAVIEAANGAEALSTVRAWGGNVDLVITDAMMPVMNGG
                     ELADALAAEYPRVKVLFMSLYTGDDIVRRGPDSRRAFMPKPFTATGLMRKVREVLDAG
                     ESS"
     gene            2257..3468
                     /locus_tag="VLI40_00545"
     CDS             2257..3468
                     /locus_tag="VLI40_00545"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HSU95683.1"
                     /translation="MTAAYEVAVDQSSSCGVPRVLCVDDDQFVLAGMQRMLHAKFEVH
                     VASGPIAALKLIDESVSSPFSVIVSDLAMPGVNGIALLKRVREMAPDTVRVLLTGHAN
                     IDSAISAVNDGAVFRFLTKPCGASALIGAVSSAAEHYRLVRSERLLLEKTLHGSIKAL
                     IDILTLVNPSAFARGTRLKRYVALVAAPLGVDNQWEIEIAALLSRLGSVSLPAALVDK
                     LHTGKELTAEEQLMADSVPAMSASFIAEIPRLDGVREILAYKNTGFDGTNSPRRGVRG
                     ESIPLGARILKVATDLDALEASGMVAEVAIGALSARADTYDPRVVAAFVGAIESDTAP
                     VHVRYVRLGEVIPGMVFAADVTGPNGLLLAARGQEVGRALTERLRYSMPEALLDQEVV
                     VIVPDARAQDR"
     gene            3476..>6116
                     /locus_tag="VLI40_00550"
     CDS             3476..>6116
                     /locus_tag="VLI40_00550"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HSU95684.1"
                     /translation="MTYRAAAGAAVIAILVALGVARRNALHRAAIGEWNRRSSSAVQI
                     ASGSAHAWIAERAAAVRMVGASGTRSPALFNRPANAGSPLADTALTHRLAIALKRVNQ
                     ASAAADAPFSDLWLLDRAGAFMGSATQSTPPAAVVAAMRAGAADSLIVVGPFPSSDNE
                     LYAVFLQPVLSSEDESARATGHATTIGAVAMAARLDATSLRRLGVAPPGRTSQHTALV
                     ARVGDSVYAYTLSKGGRGFRVHAIGVSQAGSLILRSLRAPGTVQSPDGRVPAVAAHID
                     GMPWGLVLRANRAALVHAADADFVHEVSTVLIILTFVSWLAFARGHRERARHLRGLAA
                     SEARYRLLADHSTDIIARFAPDGRVLYVSPAIRTVLGYEPQAVVNTYPFALRHDDDAD
                     VTRTAIHRVLSLREAVRTEHRFRHADGHFVWLETVGTAVRDPETGEVTEVITTSRDIV
                     DAKASEEALKTSEEQYRLLFETNPMPMWAFDAEDGRFLAVNNAAVEHYGYSRDEFQQM
                     TILDVRPQEYVHEVLTTEERMMGVAGELRGRHHRKKDGTIIDVDLMVHPLPSGDRITR
                     LVLINDVTQKNEIEAAFRESSQFVRAILGSSPVAIIATDLELRVVQWNRASEQLFGWR
                     ADEVIGKQSPIAVPATDGAADGASVAELRQALLDAGQLAGREEELARKDGTRVKVDVS
                     VAVIHNGAGVPAGFVTLAVDLTERTRLEAQLLQAQKMEAVGQFAGGIAHDFNNLLTVI
                     TAYAELLIADVDETAPKRADLQEIKGAASRAAALVRQLLAFSRRQVLVPSLIDLNAVV
                     IEMEQMLKRVFPPTVTIVTSLDPDLRAVFADTGQVEQVLMNLVVNARDAMADGGTLTI
                     ATANAATDSTGRAMDADTASTPDV"
BASE COUNT         1191 a         1773 c         1990 g         1162 t
ORIGIN      
        1 atgagactgc gcggcgcgct ccatgatcca caaacgaaaa tgcccggacg gtgagccgcc
       61 gggcagattg cgttttagca ctttgtttta cgtggcggca ataggcagca aatgaccacg
      121 aaacttcgat tgtgaccgga acatataaca ccagaagccg gcagtcaata ccgaggcgtg
      181 agccgtcaca tgtgggaccg cgccatgctg ggcatgcgcc gctacgcccg caacgcctga
      241 attgcgaggg tcgccccgat cactacgagg ccggcgtgga catagagcag gaactgcggt
      301 ccgtgcatcc ggcgattgag gtagcgtccc gcgaagatcg cgatcaatac cgccggaagc
      361 gataacacgt agtagtgagt tacggtcggc gtccagagac cggcgaccca gtaaccgatc
      421 atcaccatca cgctggccgg aagaaagtat ccctgcaggg tggcgcggaa gtggcgcggc
      481 gaccatgccc gcagcgtgcc gtagacgacg agcggcggcc cgttcatgcc gtatgcgccg
      541 ccgagtattc ctgcgacgaa gccgaacagc caggcggagc ggtcgctcct gagcacgaac
      601 ttccgagcac tcgacagcga ataggttgaa aaggcgatga tcacaattgc gagcgccgtc
      661 ttgaccacgg gctccgggac tcgtgtgagg agcaacagac cgagcggaat tccgaagaac
      721 gtcgagagga cgagccagcc cgcactgcgc atgtgtactt cggaccagtc ctgaatgagg
      781 actattgcgg cgaccgttat cgaggtaagg acggcgaccg gtgccgcaac ggttaccggg
      841 aggagcagtg ccagcagtgg taccgcgatg agagcctcgc cgaatccgaa cgccgagcgg
      901 atgagagttg cgaggaagag gactgccagt acgaggatgg ttacgtagac aggggtcaaa
      961 tcggagtcca ggattctcga tcccgatcta tcggcaatcg ggatgtggtt gcgggagtgg
     1021 cgctcatgcg tcattcaggg atgcacgtta caccattgtc caacgccatg aaatgaccgt
     1081 ttccgtcgaa acggagagcc attctccgga agcccaatcc ggtcaggcaa aaaaattgga
     1141 cgccgtcggt cgcctcgcga gcagggtagc gcacgatttc aataatattc tgaccgttat
     1201 ccatggttgc tcggattttc tcgcggcaag cctgaccgag gacgatccgc gccgcgcaga
     1261 cgcagtgatg atccgtgagg cgtcagcgcg tgcggcaggg cttactgccc aactactttc
     1321 attcgcgaca aatcaggcgg cggagtctgc cgtcgttgat ctgaatgctt gtatcactgc
     1381 tctccagccg cgtgtaattc gcgaagttgg cgatgcaatc gtgctcacga tcgatcttgc
     1441 gccggatatc gggcgcgtct cggtcgatcc gggtcggctg gaatgcgcca tcctggacat
     1501 ggccgcgaat gcgcgcgatg cgatgcccaa cggcggtgga ttgctactta cgacgcgcag
     1561 ctatttcgtg acggaggctg acatacgacg ccaccccgag gcaacgcccg ggcctcacgt
     1621 tcggttgtcg atctccgata ccggccgtgg aatggacgac gcgaccctcg cccggatatt
     1681 cgagccgttt ttcacgacga aagagcctcg cggcctgggg ctcgcgctcg cgactgtgta
     1741 tggaatgact cgacaggcgt ccggtcacat gtcggtcaaa tccgcaccag gtgcaggaac
     1801 gaagttcgat attctgcttc ccgtggtcga gggagcggcg aatacctcac cggggcctgc
     1861 tgccgacggc cggccgggac agggcaggga agtcatcctg atcgtagagg acgacgctgg
     1921 tgtgctgtcg ctcgcgtcgc gcatgctcac cgacgacggc tatgcagtaa tcgaagctgc
     1981 gaatggcgct gaagcgctga gtaccgttcg cgcatgggga ggcaacgtcg atctcgtcat
     2041 taccgatgcc atgatgccgg tgatgaatgg tggcgagctc gctgatgcgc ttgctgcaga
     2101 gtacccgcgc gtcaaggtgc ttttcatgtc gctctatacc ggtgacgaca tcgtcaggcg
     2161 cggaccggac tccaggcgcg cattcatgcc gaagccgttc acggcaactg gtctcatgcg
     2221 gaaggtgcgt gaagttctcg atgcgggcga gagctcatga ccgctgcgta cgaggtggca
     2281 gtggatcaga gtagctcgtg cggggttccc cgcgttctct gtgtggacga cgatcagttt
     2341 gtgctggcgg ggatgcagcg gatgttgcat gcgaagttcg aagtccacgt tgcctccgga
     2401 cccatagcgg ccctcaagct catcgacgag tcagtgtcgt cgccgttttc ggtaattgta
     2461 tcggatctgg caatgcctgg cgtaaatgga atcgcgttgc tcaagcgtgt tcgtgagatg
     2521 gcgccggaca ccgttcgcgt tctgcttacc gggcatgcga acatcgacag tgcgatctcg
     2581 gcggtgaatg acggagcggt gttccgattt ctgaccaaac catgcggtgc gagcgccttg
     2641 atcggcgctg tgtcatccgc tgcggagcat tatcggcttg taagatcgga acgcctgtta
     2701 ctcgaaaaaa cgctacacgg ctccatcaag gcgctcatcg acatcctgac gctggtcaac
     2761 ccttcggcgt tcgcgcgcgg aacgcggctc aagcgttacg tcgctctcgt cgcggcgccg
     2821 ctcggcgtgg acaatcagtg ggaaatcgaa atcgccgcgc tcctttcacg gcttgggtcg
     2881 gtgtcgttgc ctgcagcgct cgtcgacaag ttgcacacgg gcaaggagct aaccgcagaa
     2941 gagcaactca tggcagacag tgtaccggcg atgtctgcgt cattcattgc ggaaataccg
     3001 aggcttgatg gcgtgcgcga gattctcgcg tacaagaaca ccggattcga cggcacgaac
     3061 tctccgcgtc gtggcgtgcg gggcgagagt atcccgctcg gtgcgcgtat cctgaaggtt
     3121 gcgacggatc tcgacgcgct ggaggccagc ggcatggtcg ccgaagtcgc gatcggtgcg
     3181 ttgtccgctc gcgcggatac atacgacccg cgcgttgtag cggccttcgt gggtgcgatc
     3241 gaatcagata cagccccggt acacgtgaga tatgtgcgac tgggagaggt tattccgggg
     3301 atggtcttcg ccgcagatgt caccgggccg aacggattgc tgcttgcagc tcgcgggcag
     3361 gaagtgggca gggcgcttac ggagcgcctc cgctactcca tgccggaagc gcttctggat
     3421 caggaggtcg tggtgatcgt gcccgacgcg cgtgctcagg accgttaacc gccgtgtgac
     3481 ctatcgcgct gcagccggcg cggcggtcat cgcaattctg gtcgcgttgg gcgtggctcg
     3541 tcgcaatgcg ctgcatcgtg cagcaatcgg agagtggaac cgacgatcgt cgtcagctgt
     3601 ccagattgca agtggatcgg cgcacgcgtg gatcgccgag cgcgcagcgg ccgtgcggat
     3661 ggttggtgcc agcggtactc gcagtcccgc actcttcaac cgaccggcaa acgcagggtc
     3721 tccgctggcc gacaccgcgt tgacacaccg gctcgcgatc gcactgaagc gcgtcaatca
     3781 ggcatccgcc gcggccgacg cgccattctc ggatctgtgg ttgctggatc gggcgggcgc
     3841 gttcatgggc tccgcgacgc aaagcacgcc gccagccgct gtcgtcgccg cgatgcgcgc
     3901 cggtgcagcg gattcgctga ttgtggtcgg cccgtttccg tcgagcgaca acgagctgta
     3961 cgccgtgttc ctccaacccg tcctttcgag cgaagacgag agcgcgcgag ctaccggtca
     4021 cgcgacgacg attggagccg ttgcaatggc agccagactc gatgcgacgt cgctacgccg
     4081 cctgggagtc gcaccgccgg gccggacgtc gcaacacacg gctctcgtcg cacgtgtggg
     4141 tgattcggtg tacgcatata cgctttcgaa gggcgggcgt gggtttcgcg tgcacgcaat
     4201 cggtgtgtca caggcgggct cgctcatact caggtctctc cgcgccccag gaaccgtaca
     4261 atctcccgat ggccgcgtgc ccgctgtagc ggcacatatc gacggcatgc cgtggggact
     4321 ggtgcttcgt gcgaatcgcg cagcgctcgt tcatgccgcc gatgcggatt ttgtacacga
     4381 ggtttcgacg gtcctcataa tcctgacatt cgtcagctgg ctggcgttcg ctcgcggtca
     4441 tcgggagcga gctcgtcacc ttcgtggact ggcggcgtcg gaggcacgct atcggctcct
     4501 ggcggatcac tccacggaca tcatcgcgcg attcgcacca gacggtcggg tgttgtacgt
     4561 gtcaccagcg ataaggacag tgctcggtta cgagccgcag gcggttgtga acacttaccc
     4621 gttcgcgctg cgtcacgacg acgatgccga tgtcacgcgc accgcgattc atcgcgtgct
     4681 atcgctcagg gaagcggtac gtacggagca tcggtttcgg catgcagatg gccacttcgt
     4741 ctggctcgag accgtgggca ccgcggttcg cgatccggaa acgggcgagg tgaccgaggt
     4801 catcacgacg agccgcgaca tcgtcgacgc caaggcgtcg gaggaagcgc tcaagacatc
     4861 cgaagaacag taccggcttc tgttcgagac gaacccgatg cccatgtggg cattcgatgc
     4921 ggaagacggg cggtttctgg cggtcaacaa tgcggcggtc gagcactacg gctattcgcg
     4981 cgacgaattt cagcagatga caatcctcga cgtgcggccg caggaatatg tgcatgaggt
     5041 tcttaccacc gaagagcgga tgatgggtgt agcgggtgaa cttcgagggc gtcaccatcg
     5101 caaaaaggac ggtacgatca tcgacgtcga tctcatggtt catccgcttc cgtcgggaga
     5161 tcgcataacg cggctggtgc tcatcaacga cgtgactcag aagaacgaaa tagaagctgc
     5221 gttccgcgag tcgagccagt tcgttcgcgc gatcctgggg agttctccag tcgcgatcat
     5281 agcgaccgat ctggaactgc gcgtggtgca atggaatcgc gcgtcggaac agctctttgg
     5341 ctggcgcgcg gacgaagtca tcggcaagca aagcccgatc gcagtacctg ccacggacgg
     5401 tgctgcggac ggtgccagtg ttgctgaatt gcgccaggcg ctgctcgacg ccggccaatt
     5461 ggccgggcgc gaggaggaac tggcgcggaa ggacggcacg cgcgtcaagg tggatgtctc
     5521 ggttgcggta atccacaatg gtgcaggcgt gcccgctggc ttcgtaactc tcgcggtgga
     5581 tctcactgaa cgtacgcgac tggaagcgca attgctccag gcgcaaaaga tggaagccgt
     5641 cggacagttt gccggcggca tcgcgcacga cttcaacaac ttgctgacgg tgattacagc
     5701 ttacgccgag ttgctgattg cggatgtcga cgagactgcg ccgaaacgtg ccgatctaca
     5761 ggagatcaaa ggagccgcgt cacgcgcagc cgcactggta cgacagcttc tggcattcag
     5821 ccgccgacag gtgctggtgc cgagtctcat cgatctcaac gcggttgtga tcgagatgga
     5881 gcagatgctc aagcgtgtat ttcctccaac ggtcactatc gtgacgtcgc tcgatccgga
     5941 ccttcgcgca gtcttcgctg acacgggtca ggtcgaacag gtgttgatga acctcgtggt
     6001 caatgcgcgc gacgcgatgg ctgatggcgg aacgcttaca atcgcaactg cgaacgcggc
     6061 cacggattcg acaggccgcg cgatggatgc cgacacagca tccacaccgg acgtcg
//
LOCUS       DATIMD010000026         2748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2607769, whole genome shotgun sequence.
ACCESSION   DATIMD010000026 DATIMD010000000
VERSION     DATIMD010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2748
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2607769"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2459)
                     /locus_tag="VLI40_00555"
     CDS             complement(<1..2459)
                     /locus_tag="VLI40_00555"
                     /inference="COORDINATES: protein motif:HMM:NF021126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HSU95685.1"
                     /translation="MARTSDVSAAQPKLPELAAPRYASAWASLVYAVSTMLLAYPALA
                     GKFLINARSDQYLAGYAFREFAAQSLRSGHGFPQWNPFLQGGLPYIAAMHGDIFYPTF
                     ILRWLLPTDVAMTWEFIIHLFLAGLFTYFFLRAWNLSFWASLVGGLAYMLGGSIAGFA
                     SPGHDGKLFVSTLTPLGLLLITRSVRDGRRWAWGALAVAVGLAFLSPHPQLFQYFLLL
                     AGSFSLYVAFADHPGVGKLPRDVAIRRLAFALGAVVLGIIIGAVQYWPALIEYKPWSP
                     RAGGHDWAIATSYSFPIEETLNAYWPQFTGILDNYWGRNGIHLHSDYFGAVVLVLAGA
                     AFGRTNRVGFRRFWWIAGLVSLIWALGGYTPVYHLIMLIPYTKYLRAPSTMIFVTALC
                     VSVLAALGTDRVIGRVVSRKYAVGWIVAAAVFALLMTVGGYTALANAVAGSIANGLGY
                     PPEAHSQIVDQIMSKAQPNTAAAIIGVWRSFLFAGLAAAFIWGLLTDRVSRRNVAIAL
                     VVLVIADLWSVEREYWIFSPPASTIFASDPAIDAIKADIAKSGEPGRVFNPPAGSGMV
                     RELGREDRYFSGDKLMVHGIRVPAGYHGNELGMYQRMMALQIDSLPIDFSPQFWRHEN
                     VRYLYTAFTDEEIAQVVPRIKAPPLTKLAGPVRNSSGSMVSAYKVGAENSFAHIASAM
                     AKAPQDQALSTVLDPRFDPQTVAIVDTLAKDINPPALAALPSPSTVHPKVTRYEPGLI
                     DLSLDQPSVQGQALVVSENYFPGWHATVDGKLAPVALMNYNLIGVPLPAGARAIELRF
                     DDAAYEKGKSVTLVALVLAIV"
     gene            complement(2443..>2748)
                     /locus_tag="VLI40_00560"
     CDS             complement(2443..>2748)
                     /locus_tag="VLI40_00560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95686.1"
                     /translation="LFVQGVIGRAPGTFPDYVTAYAWPYILGYLAILLPGGLGVRDSA
                     LAVALAALKLTTPQQAVVVTVTSRLWLTVLELVPGFIYLARGLRRRSATTLRNGSNL"
BASE COUNT          606 a          817 c          881 g          444 t
ORIGIN      
        1 aagacgattg ccagcacgag tgctacgagt gttacgctct ttcccttctc atacgctgca
       61 tcgtcgaaac ggagctcaat ggctcgcgcc ccggccggaa gcggcacgcc gataaggttg
      121 tagttcatca gagcaactgg cgcgagcttg ccgtcgacgg tcgcgtgcca gcccggaaag
      181 taattctccg acaccacgag cgcctgcccc tgcacgctcg gctgatcaag tgaaagatcg
      241 atcagaccgg gctcgtagcg agttaccttc gggtgcacgg tcgatgggct cgggagcgcg
      301 gcgagcgcag gagggttgat gtccttcgca agcgtatcga cgattgcgac ggtctgcgga
      361 tcgaagcgtg gatcgaggac ggtgctgagc gcctgatcct gcggcgcctt cgccatcgcg
      421 ctcgcgatgt gcgcgaagct attctcggcg ccgaccttgt aggcggacac catcgagcct
      481 gatgaatttc gcaccgggcc ggcgagcttg gtgagcggcg gcgctttgat acgaggcacg
      541 acctgcgcga tttcctcgtc ggtgaacgcc gtatacagat agcgcacatt ctcgtgtcgc
      601 caaaactgtg gcgagaaatc gatcggcaga ctgtcgatct gaagagccat catgcgctga
      661 tacatgccaa gctcattacc atgatagccg gcgggaacgc gaatgccgtg gaccatgagt
      721 ttgtcgccgc tgaaatagcg atcctccctg cctagttccc ggaccatgcc ggaaccggcg
      781 ggcgggttga agacgcgtcc aggctcaccg gatttcgcga tgtcggcctt gattgcgtcg
      841 atcgctgggt cgctggcgaa gatcgtcgaa gcggggggcg aaaagatcca gtactcgcgc
      901 tcgacggacc aaagatcagc gatgacaagt acgactagcg caattgccac gttccggcgc
      961 gagacacgat cagtgagcag gccccagatg aacgctgcgg cgaggccggc gaagaggaac
     1021 gatcgccaca caccgatgat cgcggccgcg gtatttggct gtgccttgct catgatttga
     1081 tcgacgatct ggctatgcgc ttcgggtgga tagccgagcc cattggcgat ggagccagcc
     1141 acggcgttgg cgagtgcggt gtacccgcca acagtcatga gcaacgcgaa cacagcggcg
     1201 gcaacgatcc acccaaccgc gtacttccgc gacacgacgc gcccgatgac tcggtccgta
     1261 ccaagggcgg caagtaccga gacgcacagc gcggtcacga agatcatcgt gctcggagcc
     1321 cgcaaatact tggtgtacgg gatgagcatg atcaggtgat acactggcgt gtaaccaccg
     1381 agggcccaga tcagcgaaac gagtcctgcg atccaccaaa accgacggaa ccccacccgg
     1441 tttgtccggc cgaatgccgc acccgcaagc acgagcacca ccgcgccgaa gtaatcgctg
     1501 tggaggtgga tcccgttccg gccccaatag ttgtcgagta tcccggtgaa ctggggccag
     1561 tacgcgttga gcgtctcctc aataggaaac gagtaactcg tggcgatagc ccagtcgtgg
     1621 ccgccggcgc gtggcgacca gggcttgtac tcgatcaatg ccggccaata ctgaaccgcc
     1681 ccaatgatga tcccgagaac gaccgcaccg agcgcgaacg cgagtcggcg aatcgcgacg
     1741 tcacgcggta gcttgccgac accgggatgg tctgcgaagg ccacatacag cgagaacgat
     1801 cctgcgagca gcaggaaata ctgaaagagc tgtgggtgcg gcgagagaaa cgcgaggccc
     1861 acggcgactg caagggcgcc ccatgcccac cttcggccgt cacgcacgct gcgcgtaatc
     1921 agtagcagcc cgagaggagt gagcgtgctc acgaacagtt tgccgtcgtg ccccggcgat
     1981 gcgaaacccg cgatcgatcc gccgagcatg tatgcgaggc caccaacgag cgatgcccag
     2041 aagctgagat tccaggcccg cagaaagaaa taggtgaaga gaccggcgag aaagagatgg
     2101 atgatgaact cccatgtcat cgcgacgtcg gtcgggagca accatcgcag aatgaacgtg
     2161 ggataaaaaa tgtccccgtg catggcggcg atgtacggca agccgccttg caagaacgga
     2221 ttccactgcg gaaagccgtg acccgacctc agggattgcg cggcgaactc acggaaggcg
     2281 tagccggcga ggtactgatc gctccgcgcg ttgatgagaa acttccccgc gagcgcggga
     2341 taggcgagga gcattgtcga tacggcatat acgagcgacg cccacgccga cgcgtagcga
     2401 ggcgcggcaa gctcgggcaa tttcggttgt gccgcgctta cgtcagaggt tcgagccatt
     2461 gcgcagtgtc gtagcggatc gtcggcgcag tccgcgcgcc aagtaaatga aaccggggac
     2521 gagctccaac acggtcaacc acaatcggga tgtcaccgtg acgacgacgg cctgctgtgg
     2581 cgttgtcagc ttcaaggctg cgagtgcgac ggcgagcgca gagtcgcgca cgcccaatcc
     2641 cccgggaaga aggatagcaa gataacccag gatgtacggc catgcgtacg ccgtcacgta
     2701 gtccgggaag gtgcccgggg cgcggccgat gacgccctgc acgaacag
//
LOCUS       DATIMD010000027         3584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4340576, whole genome shotgun sequence.
ACCESSION   DATIMD010000027 DATIMD010000000
VERSION     DATIMD010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3584
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4340576"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..412)
                     /locus_tag="VLI40_00565"
     CDS             complement(<1..412)
                     /locus_tag="VLI40_00565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95687.1"
                     /translation="MKSRIAKRSFVFAALVALVACGGDSGTTPEPVNPNSASIAGVWH
                     LRSYAGSPLPYVVQNGGTTTSLNKLTFTITEDGKWSSTREGNLTMPGAPFPSGTASTA
                     QGDWSRAGTSITLVANENGLGGAPSFYVFDGTSLT"
     gene            1055..1723
                     /gene="radC"
                     /locus_tag="VLI40_00570"
     CDS             1055..1723
                     /gene="radC"
                     /locus_tag="VLI40_00570"
                     /inference="COORDINATES: protein motif:HMM:TIGR00608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HSU95688.1"
                     /translation="MTNALRISAHPAHRLRHLGAAALSTPELLAVVLGQPDALTRAGK
                     LLTASRFSLRKLAQLERGALSQFHDVKLSAERHARLAAALELGRRLSAETAEEGAPVR
                     APRDVARLYAPVLEDLQHEEFHVAVLDAQHRPKIDVCVTKGILTSSLVHPREVFARAI
                     TERAAAIILVHNHPSGDPTPSDDDRAITDQLVSAGKMLDIPVHDHVIIGRGRYTSFAE
                     AGLL"
     gene            1961..2653
                     /locus_tag="VLI40_00575"
     CDS             1961..2653
                     /locus_tag="VLI40_00575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95689.1"
                     /translation="MRTVKALSLACCLAFPLQPAYAQATRISAPNGHLLQIAQTAAAA
                     SPLGSLVSRRMASDDVELRVWDGFGVTGTLGVILRRAGGRWYAWRATLVHCDLYVAMP
                     IGDTASAATESLFVARARRECGASVGDTQGGSRVYSTDTLALERISVTDPETLWSRIV
                     AAGGLRLPPRRPMLNMRDGNLEVVEIRRGESYRASVFEAVGDATGDADGVARFLFDAV
                     VAGTRSSAKWKR"
     gene            complement(2768..3493)
                     /locus_tag="VLI40_00580"
     CDS             complement(2768..3493)
                     /locus_tag="VLI40_00580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95690.1"
                     /translation="METRRPTPSASREGVMTTEVWASAGALLSLGALHGLNPGMGWLF
                     AVALGVQRGERRVVWRALGPLALGHALAIAAAVSLALAFELALPSAGVRWGAATLLVG
                     LGGWQLRGHRHVGLGRWRFGGLRASGRELVAWSFVVATAHGAGLMAAPFALRAARSGV
                     MDHATGHASHSSAALASMVSVDWPTLWATTVHTVGYLLVMGLLAVVVYERAALHLVRR
                     AWINFDLVWGAALVLTGVAVAVV"
BASE COUNT          611 a         1218 c         1175 g          580 t
ORIGIN      
        1 tcgtcagcga ggtgccgtcg aacacgtaga atgatggcgc gccgccaagg ccgttctcgt
       61 tggccaccag tgtgatggat gtgcccgcgc gcgaccaatc gccctgcgcg gtgctggctg
      121 ttccgctcgg aaacggtgca ccaggcatgg tcaggttgcc ttccctggtg ctcgaccact
      181 tgccgtcctc agtgatcgtg aaggtcagct tgttcaggga ggttgtggta ccgccgtttt
      241 gaacgacgta gggcaatggc gaccccgcat agctgcggag gtgccagaca ccagcgatgg
      301 acgcgctgtt ggggttcacc ggctccggcg tcgtgcccga atccccgccg cacgcgacga
      361 gtgcgaccag cgcggcaaag acgaatgacc gtttcgcgat tctgcttttc atgctccccc
      421 acacaggtga atggacttca gatgaggcgg ccgcggcgtg acacggaagg aatcgccacc
      481 cgcccggctc gcagccgcgg ggcattccac cggaatggcc ggcgcaaagt cctgccgtat
      541 gtctcggggt ccctagcctc gggcgtgtct cgccgaaagt tgaacgtgat gtcgacatcg
      601 gtgcgcatgt gtcgtccggt cagcgtatcc gcgggagcgt ggccagccgc acgtctgatg
      661 agggtgagag tcttgcgccc aacgaacgga tccagcacct tcgctatgta gtatcggcat
      721 cagtgccgac ctgcatgaag agaacgggta gagaatcggc tctgtgaccc gtcgccaatc
      781 cgtttcctcg agcgaggact cacggtggct cagccgaccg acgcgaatgc tcgcgttgga
      841 gccatgtgcg atgaggattc tctctcgaaa cggagcacag catgagtcca cacggaaacg
      901 gcgtgcgttg ttcacgcgct gaccacggcg cgcagcaact gccgacgctc gtcacattcg
      961 gctccgccgc aaatgatggc ccgtgcccgc taccgctagg tggggcagtt agctcttgct
     1021 gggttcatcg ccttcagtgg gaggcgcgct agccatgacc aatgcactgc gcatctccgc
     1081 gcatcccgca caccggctgc gccacctggg cgccgctgcg ctctccacgc ccgagctgct
     1141 tgcggtagtg ctcggccagc ccgacgctct cacacgcgcg ggcaagctgc tcaccgcgtc
     1201 gcggttcagc ctgcgcaagc tcgcgcagct ggagcgcggc gcgctgtcgc agttccacga
     1261 cgtgaagctg tcggctgagc ggcacgcgcg tctcgctgcc gcgctggagc tggggcgccg
     1321 cctctcggcc gagaccgcag aggaaggcgc accggtgcgc gcgccgcgcg acgtggcgcg
     1381 gctctacgcg cccgtgctcg aagacctcca gcacgaagag tttcacgtcg ccgtgctcga
     1441 tgcccagcac cggcccaaga ttgacgtgtg cgtgacgaag ggcatcctga cctcatccct
     1501 ggtgcacccg cgcgaagtct tcgctcgtgc gatcactgag cgcgcggcgg cgattatcct
     1561 cgtgcacaat cacccgagcg gtgatccgac gccgagcgac gacgaccgcg ccatcaccga
     1621 ccagctcgtg agcgcgggca agatgctcga cattcctgtg cacgatcacg tcatcatcgg
     1681 acgcggtcgg tacacgtcat tcgcagaggc ggggctgctc tgaaaccggc gtgacttcac
     1741 acacgacaca gcctgcggcc tgaatgcgcg cggacttccc acctcgcgag gcggtgcatg
     1801 gacagccgtc caagttcagc gtttactcgc gcaaatcggc gcgtgagggt tgcattgcgc
     1861 gtgaggagtt acgtcgtccc cgcgcgcgcg tagccgcgcc gacctattgc gcggacttca
     1921 cgccacggaa agaggcgcga cgtccaaggg agggaggact gtgaggactg taaaggcgct
     1981 ctctctcgca tgctgcctcg cattcccgtt gcagcctgcc tacgctcagg cgacgcgcat
     2041 cagcgccccg aacggccacc tgctccagat cgcgcagact gcggccgctg cctctccgct
     2101 cggctcactc gtgtcgcgca ggatggcgtc tgacgatgtg gagttgcgag tatgggatgg
     2161 gttcggcgtg acggggacgc ttggagtcat cctgcgtcgc gctggcggtc ggtggtatgc
     2221 ctggcgtgcg accctggttc actgcgacct gtacgtcgcg atgcccattg gagacaccgc
     2281 gtcggctgca acggaatcgc tctttgtcgc gcgagcccgc cgagagtgtg gagcgtcagt
     2341 tggcgataca cagggcgggt cacgcgtcta tagcaccgac acgttggctc tcgagcgcat
     2401 ctcggtgacg gatcctgaaa cgctttggtc gcgcattgtg gccgctggtg ggctgcggtt
     2461 gccgcctcga cgtcccatgc tgaacatgcg agatggcaat ctagaggtgg tagagattcg
     2521 acgaggagaa tcgtatcgcg cgtcggtatt cgaggcggtc ggagatgcca cgggagacgc
     2581 cgatggcgtc gcgaggttcc tctttgacgc agtcgttgcc gggacgcggt cttccgcaaa
     2641 gtggaagcgt tagtcggcag ttacctcatc gtcgccagcg ctggtgatcg gccgctccgc
     2701 tcggcctccg cgaccggagc gcgacgggaa gagcgctccg gcggcggcag tagcaacgaa
     2761 gccgccctca caccaccgca accgctaccc cggtcagcac gagcgccgcg ccccagacca
     2821 gatcgaagtt gatccaggcg cgccgcacca gatggagcgc cgcacgctcg tacaccacca
     2881 ccgccagcag ccccatgacg agcaggtagc cgacggtgtg cacggtcgtc gcccacagcg
     2941 tgggccaatc caccgacacc atgctcgcga gcgcggcgga cgaatggctc gcgtgaccgg
     3001 tcgcgtgatc catcacgccc gaccgcgcgg cgcgcagtgc gaagggcgcg gccatcaggc
     3061 ccgccccgtg cgcagtggcg acgacgaacg accacgcgac gagctcgcgc ccactcgcgc
     3121 gcagcccgcc gaagcgccag cgtccgagcc ccacgtgccg atgtccgcgc agctgccaac
     3181 caccgagtcc aacgagcagc gtcgcggctc cccatcggac accggcgctc ggcaacgcga
     3241 gctcgaacgc gagcgcgagc gacaccgccg cggcgatggc gagcgcatga ccgagggcga
     3301 gtggacccag cgcgcgccac acgacccgcc gttccccgcg ctgcacgccg agtgcgacgg
     3361 cgaacagcca acccatgccc gggttcagtc cgtggagggc gcccagcgac agcagcgccc
     3421 ccgccgacgc ccacacttcc gtcgtcatca cgccctcacg agaagcagaa ggagtcggac
     3481 gacgcgtctc caccctgcag tcgcacctgg tgcggacgga ttccctcgtc gaactgcacg
     3541 aagaagctcg ggtccagcgc catgtcgccg gtgctgtcgg tgtc
//
LOCUS       DATIMD010000028         7148 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2030556, whole genome shotgun sequence.
ACCESSION   DATIMD010000028 DATIMD010000000
VERSION     DATIMD010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7148
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2030556"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1785
                     /locus_tag="VLI40_00585"
     CDS             <1..1785
                     /locus_tag="VLI40_00585"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSU95691.1"
                     /translation="NQRLLEAILDRRSFFFRPPYFGDAEPTTTDELVPVDIASKRGYV
                     TVGLHIDAEDWQPISASQIVKNVLDQRYYGGVVTAGGLRSGGNVILLHDGGGNRAQTV
                     KALGPIIDSLRAHGDTVVPLSQLAGISEQEAIPGLPPRSAFTRAIELATFSFVSGLEW
                     TLYWLFFIAVVVGAIRLVVIIILATYQRYHSRKPTPDYTPSVTIIVPAYNEERVIVST
                     VRSLLHQEYGGELNILVVDDGSPDETFNVAQREFGDDTRVLVLRKENGGKASALNFGI
                     ARARGEIIVCLDADTQFTPTTVARLVAPMSDHKVGAVAGNAKVGNRHNMVTRWQALEY
                     VTSQNLERRAFAVLNAITIVPGAVGAWRKSYVQAVGGFSDDTLAEDQDLTWALGEEGV
                     RVTYADDAIAYTEAPDTLRTLIRQRFRWSFGTLQSVWKHKKITFRPKYGSLGMIAMPN
                     VWIFQLFYTAISPLADILFAWSLFSVLIARYQHGDRYALSNLEDVLKLYVIFLVVDWL
                     AAVVAFLMEPGEEKALTWLVLIQRFVFRQTMYWVVVKSIAAALRGHVVGWGKLERKGM
                     NLLPTTAHASSHAPVQPSVQPAPPGSSA"
     gene            1782..3845
                     /locus_tag="VLI40_00590"
     CDS             1782..3845
                     /locus_tag="VLI40_00590"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU95692.1"
                     /translation="MKQPPIESMLQIPGLSRALIEQSPLSTVIFDAKGHPVFTNAATR
                     NLWGTSIDDTPADYSILNDPQLEAQGLSGLVDRAFNGETVLMPRLRYDAGVIAPGGRT
                     VWTKGHFYPLIASDGTLHGVALVSVDLTARVEAEEALRHSEQRLRTALDAGQMGAWEW
                     ILDEGTVRWSETLEQIHGLEPGTFGGTFEAYEQDIHPDDRERVFQTVGQTISGRDHHL
                     SYRIIRPDGAVRWVEAHGRLVRDENERPTRVVGVCTDVTEKHRADEIARFLIDASEVL
                     ASSLDYDVTLSNVARLAVPTLADYCIIDLLEPDTETGIRRVATAHADPATDVLLAGVR
                     QFPPELDSDGIVARAIRTGKVQIASPITDVVREAAASDRIAHQRILRALHPYSILCAP
                     LTVQENILGTILLAFADSGRAYTADDIPLVTELARRAAMAVNGAHLLRATVLARSAAE
                     RAAEEATAANRAKSDFLAVMSHELRTPLNAIGGYAELLMLGIHGPVTAEQVDDLERIK
                     RSQRHLLSLINDLLNYAKLESGHVMYQMEDVVVQDVLTGIEPLVAPLFVTKGVRYVFH
                     QTDCDVKARADAEKMRQILVNLLSNAVKFTAAGGTVGVSAAVAGTAVCIAVSDTGVGI
                     PDTKLEIIFEPFVQLSRDLSHNLDGTGLGLAISRDLARAMGGDLSASSRVGQGSVFTL
                     TLPRA"
     gene            3995..5407
                     /locus_tag="VLI40_00595"
     CDS             3995..5407
                     /locus_tag="VLI40_00595"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSU95693.1"
                     /translation="MTSSIREIMRAELGDAYVIERELDGGMSCVFVAEDRDLARRVVI
                     KVLHPHLAASVSVERFRREILTIAGLQHPHIVGVLRTGMAAGLPYFIMPYVDGESLAK
                     RLTAGPMAVRDAVAILKDVARALAFAHERGVVHRDIKPGNILLAGGSAMVTDFGVAKA
                     LSSARRTDPDAVGHALTTDGTSIGTLLYMAPEQAAADPDIDGRADIYSLGVTAYEMLT
                     GSPPFAGLSARAMLAARMSTLPPAVSEVRTDVPAELNDLIMRCLATDPADRPGNAQDV
                     VDALEQPGVVSGEFVKAMRPRIIRRGGLAGIAAGLALIAIVGAGVATSRGNAGGNASL
                     RAAAMTTPLGEIAVVPFVDLGSDAADSSVAIGITNAVADNLTRSAHIKVISPTASAAL
                     VRDIRAGTTSVSKAPPKLLLEGTVQREGSKLRVTARLSNASDGVMRWADVYDRDGRDL
                     FKVTDDIAAAIVASIKHPSA"
     gene            5636..7129
                     /locus_tag="VLI40_00600"
     CDS             5636..7129
                     /locus_tag="VLI40_00600"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU95694.1"
                     /translation="MPLSCRLRTSALIIATLCLGACAYGPPSVNGVPGAPASPSTTWT
                     RPSHGLAPEPPQTVSALPPDILERASRLTLGDVIDVALRNNPVTRVSWAQARAAAAEY
                     GATRGSFLPTITGSATVSRTKSVPVNGGESIERTQVNPAVTLSYLLLDFGGRSGTIDA
                     ARQNLFAADLTHNATIQNVVLQVETAYFTYMANNALLGAERSAIAEAQANLSSAQQRD
                     SVGLATIADVLQARTALSQEQLNLESIQGSLQTARGNLAAAMGIPANVSYDLGPLSGA
                     VPVRAVSVTVDSLIADALARRPDLAAARAQAAAASADIRVAKSAALPALTFGSTAGRT
                     YADPARFGGGSYGLTLGVSVPIFSGFSQQYDIVAARARADAATAQADILRQEVTTQVF
                     TSYYTLQTAGQRVITADALLASAVQSEQVAAGRYREGVGSIIDLLTAQSALANARAQQ
                     VQSRWQWYTALAQLAHDAGVLGTRGETPFPFVPSPDTTPTSQTAPHP"
BASE COUNT         1323 a         2212 c         2251 g         1362 t
ORIGIN      
        1 aatcagcgat tgctcgaagc gattctggat cgccgttcgt tcttctttcg accgccgtac
       61 ttcggcgacg cggagccgac gacaaccgac gaactggtgc ccgtcgatat tgcgagcaag
      121 cgcggctatg tgacggttgg cctgcacatc gacgccgagg actggcaacc gatatcggca
      181 agtcagatcg tcaagaacgt cctggatcag cggtactacg gcggcgtcgt gacagccggc
      241 ggcctgcgtt ccggcggcaa cgtgatactg ctgcacgacg gcggcggaaa tcgcgcgcag
      301 acggtcaagg cgctcggacc gatcatcgat tcgttgcgtg cgcacggcga taccgtagta
      361 ccgttgtcgc agctcgcggg catttcggag caggaggcga ttccggggct tccgcctcgc
      421 agcgcgttca cgcgcgcgat tgagctggcg acgttctcct tcgtcagcgg cctcgaatgg
      481 acgctctact ggctgttctt catcgccgtc gtggtgggtg cgatacggct ggtcgtcatc
      541 atcatactgg cgacgtatca acgttaccac tcgcgaaagc cgacccctga ttacacgccg
      601 tccgtgacga tcattgtgcc agcgtacaat gaagagcgtg taatagtttc caccgttcgg
      661 agcctgctcc accaggagta cggcggcgag ctcaacattc tcgtggtcga cgacgggtcg
      721 cctgacgaga cgttcaatgt cgcgcaacgc gagtttggcg acgatacgcg cgttcttgta
      781 ttgcgtaagg agaacggcgg aaaggcgagc gcgctgaatt tcgggatagc acgcgcgcgc
      841 ggtgagatca tcgtgtgtct cgacgcggac acccagttca cgccaacgac cgtcgcgcgg
      901 ctggtagcgc cgatgagcga tcacaaggtc ggcgctgtcg ctggaaatgc gaaggtcggc
      961 aaccggcaca acatggtcac gcgctggcag gcgctcgagt acgtcacgag ccagaatctg
     1021 gagcggcgtg cgtttgcggt cctcaacgcg ataaccatcg ttccgggcgc ggtgggtgcg
     1081 tggcgcaagt cctatgtgca ggcggttggc gggttcagcg acgacacact tgccgaggac
     1141 caggatctca cctgggcact cggcgaggag ggcgtgcgag ttacgtacgc ggacgacgcg
     1201 attgcgtaca ccgaagcgcc cgacacgctc aggacgctca tcagacagcg tttcaggtgg
     1261 tcgttcggga cgcttcagtc ggtgtggaag cacaagaaga tcacgttccg acccaagtat
     1321 ggctcgctcg gcatgatcgc gatgccgaat gtctggatct tccagctgtt ctacaccgcg
     1381 atatcgccgc tcgccgacat actgttcgcg tggagcctgt tctcggtgct gatcgcgcga
     1441 tatcagcatg gcgacagata tgcgctgagc aacctcgaag acgtactgaa gttgtacgtc
     1501 atattcctcg tcgtcgactg gctcgctgcc gtcgttgcct tcctcatgga acccggggaa
     1561 gagaaggcgc tcacgtggct tgtgctgatc caacgcttcg tgttccgcca gacgatgtac
     1621 tgggtcgtcg tcaagtcgat cgcggcggcg ttgcgcggac acgtcgtagg gtggggcaaa
     1681 ctggagcgca agggaatgaa tctccttccg accacggcgc acgcatcgag tcatgcaccc
     1741 gttcagccgt cggtacagcc ggcgccacca ggatccagcg cgtgaagcag ccgcccatcg
     1801 aatccatgct ccagattcca gggctgtcgc gcgcgctgat cgaacagtca ccgctcagca
     1861 ctgtcatctt cgacgcgaag gggcatcccg tattcaccaa tgcggcgaca aggaatctgt
     1921 ggggcacgag tatcgatgat acgccggcgg attattcaat actgaatgat cctcagctcg
     1981 aagcgcaggg gctgtccggc cttgtagatc gggccttcaa cggcgagacg gtgctgatgc
     2041 cgcggctgcg ctacgatgca ggggtgatcg cacccggtgg acgaaccgtg tggacaaagg
     2101 gacacttcta tccactgatc gcttccgacg ggactcttca tggcgtcgcg ctcgtcagcg
     2161 tggatctgac cgcgcgcgtg gaagcagagg aggcgttgcg acacagcgag cagcggctgc
     2221 gcaccgcact cgacgcggga cagatgggtg cgtgggaatg gatcctggac gaaggcactg
     2281 tccgctggtc cgagactctc gagcagattc acggactgga acctggaaca ttcggcggaa
     2341 cgttcgaggc atacgagcag gacattcatc ccgacgaccg cgagcgcgtg ttccagaccg
     2401 tcgggcagac catctccggt cgggatcacc atctttcgta tcgcatcata cgtccggatg
     2461 gcgccgtcag atgggtggag gcgcatggtc gtctcgttcg cgacgagaat gaaaggccca
     2521 cgcgcgtagt cggcgtgtgc acggacgtca cggagaaaca tcgcgctgac gagatcgccc
     2581 ggtttctcat agatgcgagc gaggtgctcg cgtcgtcgct ggactacgac gtcacactgt
     2641 ccaacgtcgc gagactcgct gtaccgaccc tcgccgatta ctgcatcatc gatcttctcg
     2701 agccggatac tgaaactggc atccgccgcg ttgctaccgc gcatgctgat ccggcgaccg
     2761 atgttctgct tgctggcgtg cgccagtttc cgcccgagct cgattcggat ggcatagtcg
     2821 cgcgcgcaat tcggaccggg aaggttcaga tcgcgagtcc aatcaccgat gtcgtgcgcg
     2881 aagctgcagc gtccgaccgg atcgcgcatc agcgtattct gcgtgcgctt cacccatact
     2941 cgatactgtg cgcgccgctg acagtgcagg agaacatact cggtacgatc ctgctcgcgt
     3001 tcgccgattc cgggcgcgcg tacacagcgg acgacattcc gctggtgact gagctcgcgc
     3061 ggcgtgcagc gatggctgtg aatggtgcac accttctgcg cgccaccgtt ctcgcgcgct
     3121 cggcggcgga gcgcgctgcg gaagaggcaa ccgcggccaa tcgcgcgaaa tccgacttcc
     3181 tcgccgtgat gagtcacgag ctgcgtactc ccctcaacgc gatcggcggc tacgcagagc
     3241 tgctgatgct gggaattcac ggaccggtca ccgcggagca ggtcgacgac ctcgagcgaa
     3301 tcaagcgcag ccagcgtcat ctgctgtcgc tgatcaacga tcttctcaat tatgcgaagc
     3361 tcgagtcagg tcacgtcatg tatcagatgg aggacgtcgt ggtgcaggac gtcctcaccg
     3421 gtatcgagcc gctggttgca ccactgttcg tcaccaaggg cgtgcgatac gtgtttcatc
     3481 agaccgattg cgatgtgaag gcgcgagcgg acgcggagaa gatgcgacag atcctggtca
     3541 acctgctgtc caatgcggtg aaattcacag ccgccggtgg tacggtcggc gtctcggcgg
     3601 ccgttgccgg aacagctgta tgtattgctg tgtccgacac cggcgtcggg ataccggata
     3661 caaagttgga gatcatcttc gagccatttg ttcagctatc tcgcgatctc agccacaacc
     3721 tcgacggaac cggtctcgga ctggccatca gccgcgacct cgcacgtgcc atgggtggcg
     3781 atctgagtgc gtcgagccga gtgggacagg gctccgtctt cacacttacg ctgcctcgcg
     3841 cgtagcatgg atatggcagc aaggatgtga gagaacgacg ctgactcgtt aacgcgagtc
     3901 aggggtattc gtctcagggt tcgacacgct gcgcaaccat tttcgtttcg gcgccgtcta
     3961 atcagcaacc acatcgatta aagacaacag accagtgacc tcctccatcc gggaaatcat
     4021 gcgcgcagag cttggcgacg cgtatgtaat cgagcgagag ctcgatggag gaatgtcatg
     4081 cgtcttcgtc gcggaggatc gcgacctggc tcgccgcgtc gtcatcaagg tgctgcaccc
     4141 gcatcttgcg gcatctgttt ccgtggagcg gttcaggcgc gagatcctca ccatcgcagg
     4201 tctgcagcac ccgcatatcg ttggtgttct gcgcacgggc atggcggccg ggctgccgta
     4261 tttcatcatg ccgtacgtcg atggtgaatc gctggcgaag cgcctcaccg ccggccccat
     4321 ggctgtacgc gacgcggtcg cgatactcaa ggacgtcgcg cgggcgcttg cgttcgccca
     4381 tgagcgcggc gtcgtgcacc gtgacatcaa gccgggcaat atccttctcg ccggtggctc
     4441 cgccatggtc accgatttcg gcgttgccaa agcgctctcg tctgcacgtc gcactgaccc
     4501 ggacgccgtg gggcacgcgc tgacgactga cggtacttcg atcgggacac tgctctacat
     4561 ggctcccgag caggcagcgg ccgatcccga tatcgacggg cgagccgaca tctattcgct
     4621 gggcgtcacg gcatacgaga tgttgactgg ctcgccgccg ttcgcgggtc tctccgcacg
     4681 tgcaatgctc gctgcgagaa tgagcaccct gcctccggcg gtctcggaag tacggaccga
     4741 tgtgcccgcc gagctgaacg atctgattat gcggtgcctc gcgacagacc ccgccgatcg
     4801 gcccgggaac gcgcaggacg tcgtggatgc cctggaacag cccggtgttg tcagcggaga
     4861 attcgtcaag gcgatgcgcc cgcgtatcat ccgccgcggc ggattggctg gcattgccgc
     4921 tggtctcgca ctcatcgcaa tagtcggcgc cggagttgcc accagccgtg gcaatgctgg
     4981 tggaaacgcc agcctccgcg ctgctgcgat gactacgcca ctgggagaga tcgccgttgt
     5041 cccgttcgtc gacctgggct ctgatgcggc tgattcgagc gtggccatcg gcatcacgaa
     5101 cgctgttgcc gacaacctca caaggtccgc gcacatcaag gtgatctcgc cgacggcgtc
     5161 cgccgcgctc gtccgcgaca ttcgcgccgg aacgacgtcg gtcagcaagg cgcctccaaa
     5221 gctgcttctc gagggaaccg tgcagcgcga aggatcgaag ctgcgcgtta cagctcgctt
     5281 gagcaacgcg tcggacggcg tgatgcgctg ggccgatgtg tacgatcgcg acggtcgcga
     5341 tctcttcaag gtgacagacg atattgcggc tgcgatcgtc gcgtcgatca agcatccttc
     5401 ggcgtagcgc cttcggcata gcgctatccg gagcgcgcta acgcgagccg gatgttgatc
     5461 acggacaaat gttgatgaat tcttagcgtc gacggtcgtc aatcgccggc gcactggcgt
     5521 gcacatcgcc acagcgacgt ttgcgatgca acggtgtacg ctttcctgtc aaatcttacc
     5581 tattctgtcg tgcttcggtc acagcgagtg acgctgttca aacgtaccga aatcgatgcc
     5641 actttcctgc cgattgcgga cttccgctct tattatcgca accctgtgtc tcggcgcgtg
     5701 tgcttatggg ccgccgagcg tcaacggcgt cccaggagca cctgcgtcgc caagcacgac
     5761 gtggacgcgg ccgagccacg gcctcgctcc cgagccgccg cagactgtct ccgcacttcc
     5821 tcccgacata ctcgagcgcg cgagtcgcct taccctcggc gatgtgatcg acgtcgcgtt
     5881 gcgcaacaac ccggtgacgc gcgtgtcgtg ggcacaggcg cgtgcggcag ccgcggaata
     5941 tggcgcgaca cgcggatcgt ttcttccgac gatcaccggg tccgcgactg tttccagaac
     6001 caaatccgtg ccggtgaacg gcggcgagtc gatcgagcgc actcaggtca atccggctgt
     6061 cactctgagt tacctgctgc tcgacttcgg cggccgcagc ggcacgatcg acgccgcgcg
     6121 acagaatctc ttcgcggccg atctcacgca caacgccacg attcagaacg tggtcctgca
     6181 ggtcgagacc gcatatttca cctacatggc gaacaacgcg ttgctgggcg ccgagcgctc
     6241 ggcgatcgct gaagcacagg cgaatctgtc gtccgcgcaa cagcgcgaca gcgttggtct
     6301 ggcgacgatc gctgatgtgc ttcaggcgcg aactgcgctg tcgcaggaac agctcaatct
     6361 cgaatcgatt cagggcagcc tgcagaccgc gcgcggaaac ctcgctgcgg ccatgggcat
     6421 tcccgcgaac gtgtcgtatg acctcggtcc gctctctggc gccgtgcccg tccgcgcggt
     6481 ttcggtgacg gtggacagtc tgatagcaga cgcgcttgcg cgccggcccg atctcgcggc
     6541 ggcgcgcgcc caggcggctg cagcctcggc agatatcaga gtggcgaaat ccgcggcgtt
     6601 gcccgcgctg actttcggta gcactgcggg caggacgtac gccgatccgg ccagattcgg
     6661 cggcggctcg tacggactca cgcttggtgt gtcggtaccc atcttcagtg gattctcgca
     6721 gcagtacgac atcgtggctg cacgcgcgcg cgctgatgcg gcgacggctc aggcagacat
     6781 cctgcgacag gaagtaacga cgcaggtgtt cacgtcgtac tacacgctcc agacagcagg
     6841 acagagagtg atcacggctg atgcgctgct cgccagtgca gtccagtccg aacaggttgc
     6901 ggcgggacgg tatcgtgagg gagtcggtag catcatcgac ctgctcacag ctcagtccgc
     6961 cctggccaat gcgcgcgcgc agcaggtcca gtcgcgctgg cagtggtaca cagcactggc
     7021 gcaactcgct cacgatgccg gagtgctcgg tacgcgcggc gagacgccat tcccattcgt
     7081 gccgagcccc gacacgactc ccacgtcgca gaccgcaccg cacccatgag ttatagaccg
     7141 aagacgtt
//
LOCUS       DATIMD010000029        19653 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4918561, whole genome shotgun sequence.
ACCESSION   DATIMD010000029 DATIMD010000000
VERSION     DATIMD010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 19653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19653
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4918561"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VLI40_00605"
     CDS             <1..199
                     /locus_tag="VLI40_00605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95695.1"
                     /translation="SSVNHYKLNCNAGTTSVGPGAFYDAAGSPIMSMSNGYTPLQQPS
                     SGTPAEQILTRVCAVLRARQR"
     gene            complement(274..1923)
                     /locus_tag="VLI40_00610"
     CDS             complement(274..1923)
                     /locus_tag="VLI40_00610"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSU95696.1"
                     /translation="MNRTTPIPTVDFDATGAGTDDARVHLERTLGLRYRIQQQLGRGQ
                     FSTVYHAVGIEIPGAVALKLLDLDTSVNSELAQRLEDDVRLSASVAVDGILAPLGIEQ
                     HDSSIILVMPLMRAGNLAALLHARGPIPLDEVQRLVLVLASTLDRLHARGITHRGLTP
                     ENILFDAAGHPLISDVGVTDTLLTAKGIHGTRASRAAAYAAPEQRRSQKVDGRADQYA
                     LAAIAYELLTGERRVGDDLHVGIHTVPPIEVHAHTALRKDIPLYVNAALRQALSANAS
                     NRFATTTQFAEALAGVGPNRGRGLPTTRHRFVLKRRHRVAGIIAAVFAVFAVATAVDP
                     TVRYHVREAWNAVARRTSLPEVKLGLPTDRVTSPSTKSAVGSSATPSAAASNVSSASP
                     SSPPARAGESRLPSTRASQPVTIGSSNPVDGNPAIIHLRSSIPDGSRLPDAPDGSKAV
                     SESRAALRGSWSWVTNAFSRWFGKNASQAAIIQVSADPGPALVTIDGIPRGLAPLTVS
                     VSPGHHTISVSGSVGYVAAARDVNSQSGETISLSFHKLTKP"
     gene            complement(1916..2386)
                     /locus_tag="VLI40_00615"
     CDS             complement(1916..2386)
                     /locus_tag="VLI40_00615"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HSU95697.1"
                     /translation="MPRLISYVATFFLPLFIWIAIRWIPSFFTITQSPLLRTAGASFW
                     LFGTVLSFWPIWYMRRSFSIEPAARELATKGPYRIARHPIYATQLLEYLGIWMLHATV
                     AFAAALVGWLIIVRVRMRYEEQVLRDVFPEYASYQQRVGAFGPRLRPVLAMSGE"
     gene            complement(2620..3687)
                     /locus_tag="VLI40_00620"
     CDS             complement(2620..3687)
                     /locus_tag="VLI40_00620"
                     /inference="COORDINATES: protein motif:HMM:NF021493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein TadG-related protein"
                     /protein_id="HSU95698.1"
                     /translation="MPTLRSKRGATLVLVAIMMTVLIGFAGIAVDASRLYVMRAELQT
                     AADAAAIAGIVEVKDKRPANATTIAIQYATNNVVEHTAPTVAASDVEPGTWNFATNAF
                     TTLGTWTDPALNAVRATAHYPGSYTFARVFGGTGQTVHARAIGAIGYVSTTDCLKPWA
                     VSYQTLLDALYPPAGTKNISYNLTAQDIQTLSGMAAPANQVTLLNGTTNQLTPGNIAQ
                     VVVGSPWNGNNAYKNAITGACPNLEIGPGTILNGDPGAGSGQTAQAIQTLCGVNGNPK
                     TFACPGVKVKLAIWDQNNGATGANLTVRVKYVGVFGITQFTAGSGSAADQITGFFSTM
                     ATTGSFSATPGPTTGAIALVQ"
     gene            complement(3763..4683)
                     /locus_tag="VLI40_00625"
     CDS             complement(3763..4683)
                     /locus_tag="VLI40_00625"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HSU95699.1"
                     /translation="MPLIPAPLIALIGVLVLAVGVAAYAILRDRERRRLMDRAGIQFA
                     DDSILLKSTEESIGGRIAKWLVAKVPESFSQNYAVDKLLHAGFESPAAPVIFFMTRLA
                     CALAVPLLAFLLVPRKSALIFVAVMAISVLIGLVLPPAYIDRRGRHRQELLRRAIPDS
                     LDLLVVCVEAGVSLDAAIMRVAREMATLHPDLAAELLIVHRRVNAGIPREQALRGLWE
                     RTGVEDLRGLAANMIQCEKWGTSIATVLRVYAESLRRKRKQLAEKRAATAPLKMTFPL
                     AVFIFPAIFVVLLGPAMMSIAAMFRGIAQR"
     gene            complement(4692..5639)
                     /locus_tag="VLI40_00630"
     CDS             complement(4692..5639)
                     /locus_tag="VLI40_00630"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HSU95700.1"
                     /translation="MLLVLAGVFLGTILLIIAGYVLVNRRQLVAAEAFRARLAPAPAI
                     GATSSILKEEKASDIGTLNRMLAGRDFTATISAQIYKAGSKLSVGEFVLLSLLWAGIG
                     FFIGRRIGILAAPFMALAFGYLPFLNLKRKAAARLKEFQAQLPESIDMLVNAMKSGYS
                     IQAAIKFVGDEMPQPLGPEFARVYDEQRLGMELRNALLLLQERVDTLDCKMFVTALLL
                     QRETGGNLAEVLTNLATLMRERVGLRGQIDTLTAEPRMSAIVLAMLPIVLFIIVTMAN
                     RNYMSPLWTAPMGKLLLLYAVVSIILGYIVLRKIGQIDI"
     gene            complement(5642..7069)
                     /locus_tag="VLI40_00635"
     CDS             complement(5642..7069)
                     /locus_tag="VLI40_00635"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HSU95701.1"
                     /translation="MAPTLRDRLLGRTVPTPIHTPSISSSNGGASGAAAVDSAGPSSG
                     MYSGLRSDEATLTAVEQLKVELHRRLIERLDLEALEKISDEAVIVQQIRNAVSELLRG
                     ESTPFSQAEREEVVEQIVYEVIGLGPIEPLFRDRTVTDILVNGAKEIYVERNGKLSRA
                     LTSFRDDTHLLSIIDRIVSRVGRRVDESSPMVDARLPDGSRVNAIIPPLAIDGPVLSI
                     RRFGAEITIQNLIEFGALTDDMVNLLAGCVRARLNVLISGGTGAGKTTLLNALSSFIP
                     SSERVITIEDAAELRMQQEHVVRLETRPPNSEGRGEVLARDLVKNALRMRPDRIIVGE
                     VRSAEALDMLQAMNTGHEGSLTTIHANTPRDALARLETMILFAGTNLPNRAMREQIAS
                     ALDLIIQVSRLTDGSRRVTSVTEVTSMEGEIITMQEIYRFRRRGVSAEGRVIGQFEAT
                     GVRPAFVERLQLAGVELPPHLFAER"
     gene            complement(7069..8247)
                     /locus_tag="VLI40_00640"
     CDS             complement(7069..8247)
                     /locus_tag="VLI40_00640"
                     /inference="COORDINATES: protein motif:HMM:NF022077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HSU95702.1"
                     /translation="MARKALIVSGAAGPQDIANAVLHRFGFAPAESALSLNDATARLR
                     AERFDLVVLPLQGLGSIELSALDRETRRVGTFVIGTAVQSDSELILRAMRSGINEFLL
                     YPPDPKEFSGAVDRLMRRTHTDNKSGGAIAIYSAKGGLGCTSVAVNLAFALAKAHPEG
                     HVALVDLVGGGGDLRAMLDLRPQYDMSDLLGKIDRLDSELLRSLLTPVSGGVWVLPSS
                     ESPESADAFDATSVTTLIEQLRQHHSFTVIDCEHALSDRTLTALDSADRVILVTQLNV
                     PALRSTQRTLALFQRLGYEADKVNVVVNRHQASDAVSLADASEVLGREIFFKLPNDYR
                     TLSGALSKGVPVADFDASSHLSWSFDGLAGRMNGGTPAKGIATQSGSRLGRLFRRGRK
                     "
     gene            complement(8257..9402)
                     /locus_tag="VLI40_00645"
     CDS             complement(8257..9402)
                     /locus_tag="VLI40_00645"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein N-terminal
                     domain-containing protein"
                     /protein_id="HSU95703.1"
                     /translation="MARIAVLAAACCGVLLCATAVAAQTPDTAVLRVDLPAGRSYPIT
                     TASNITQVSVASPDVADVLVMGSRALVINGRGSGESDVILWLADAPLRHYRVSVHAPP
                     DRQQVVLAVKFAEVRRDFLRNLGLSGLYRGNHARVGTGQFNTDNGFNGNTGSFTLPNA
                     AGFGTVLTDFGTSTLLGLLDADEQTGTARILAEPTLMAGNKDTASFLAGGEIPIPVAQ
                     NSASGIPTITILWREFGIKLNFVAEVVSDSVIRLHLRPEVSSLDFNNALTISGFKVPA
                     LRSRHIESTVDVRRDQSLIISGMMDDERQKTKDGIPFLKDIPILGSLFSSTTWQRNET
                     ELLIIVTPTVTDPMHPRPQDVMHFSPDSVLPAHEALEPRLPSSLAKP"
     gene            complement(9501..10409)
                     /gene="cpaB"
                     /locus_tag="VLI40_00650"
     CDS             complement(9501..10409)
                     /gene="cpaB"
                     /locus_tag="VLI40_00650"
                     /inference="COORDINATES: protein motif:HMM:TIGR03177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly protein CpaB"
                     /protein_id="HSU95704.1"
                     /translation="MAERRYNLVLFAAILTALVATFGVYRYLQQAKLSSQVQMQSVVV
                     AARDLSEGEKLERLALSTTQWPVGTAPESAFANIDSAIGRVARVAVFKGEPIVPGRLA
                     PAGTGPGLEVKIAPGKRAMAVKINDVAGLSGLIQPNSRVDVLVTLQANQTQNTKEQAK
                     MFMNNMRVLSVGTQVERGEDGKPIQATTATLEVTPQQAEQLAVAMNEGMIQLVLRGYG
                     DPDSVTTAGATSTDVLAQLRSRAMVTEPASKPERRHVRERPAPVMPAPEPVRTVVADP
                     RRDSVVVRVYRGDKLSQQKFEQKDST"
     gene            complement(10472..10948)
                     /locus_tag="VLI40_00655"
     CDS             complement(10472..10948)
                     /locus_tag="VLI40_00655"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE family protein"
                     /protein_id="HSU95705.1"
                     /translation="MVSTPNLPVRGFTMRLRIFADSDDAAALVEFAIVLPILLLIVFG
                     IVDFGRALYTANNLTSAVREGARLASTQISPDPTIAASKTAVTNAVTAYTTAIDVNAP
                     APTVTETFAGAPPNMQSITVKITAYPFTPITPLAGIFGLGTITMSPSATFRWEGAP"
     gene            complement(10921..11484)
                     /locus_tag="VLI40_00660"
     CDS             complement(10921..11484)
                     /locus_tag="VLI40_00660"
                     /EC_number="3.4.23.43"
                     /inference="COORDINATES: protein motif:HMM:NF013632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HSU95706.1"
                     /translation="MFAATLPRSEAELPILVTFTILVGIAAAMDLRFRRIPNSFALTI
                     VLIGSVVAVLTMGPAKALPRILEGSAAGLIMWFPFWALRMLGAGDVKFFAAAAAWLGP
                     WLAFEAALASAVFGGVIALLWLLWSSRPAVGVSQPFDAATASASNVNDELAVERHAPK
                     DRISLPYGVAMAAGLVVTAWFPHLIYR"
     gene            complement(11558..11734)
                     /locus_tag="VLI40_00665"
     CDS             complement(11558..11734)
                     /locus_tag="VLI40_00665"
                     /inference="COORDINATES: protein motif:HMM:NF016828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HSU95707.1"
                     /translation="MTRINKLVRHFAKNEEAATMVEYALMLSLIAVVCIIAVTLIGTN
                     ANTIFNNIATNLPA"
     gene            complement(11874..12050)
                     /locus_tag="VLI40_00670"
     CDS             complement(11874..12050)
                     /locus_tag="VLI40_00670"
                     /inference="COORDINATES: protein motif:HMM:NF016828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HSU95708.1"
                     /translation="MTHTGKLIRSFMRREDAATMVEYALMLSLIAVVCIIAVTLIGTN
                     ANTIFNNIATNLPA"
     gene            complement(12529..13845)
                     /locus_tag="VLI40_00675"
     CDS             complement(12529..13845)
                     /locus_tag="VLI40_00675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95709.1"
                     /translation="MEPFAWTRSGAPYYAYSWLPELLYYLLYAHVGALGLRVFHGLTF
                     VAGGASVLWLARVAGWRAWSALYLIFLSLLPTILIAAYLRPQALLFPLVVLAWAAGLR
                     VLDSKNPARWIAALIVIASLAANSHLLFPLTALPAAIALTRAPTPWKRGGMIAVALLA
                     GWAISPYALSWPSVFHLYFQRNAMLDFPSGIQEFTPGFTFARVSPICFILVILLAAVP
                     WVLRDADTTPRERLIFGLMWFAGMFAFALVGRALLVWWFASLPALVHLIRRIPQLQRG
                     FQRRLALAAMASLPLVMSFGLAWHSDSFGGDLSTPARRSVESLVTWLDTHAHPSGHPK
                     VLTVFNYGSYLTWRLPAYSMSVDGRAIFPDSAAAPDAYRVAKDGPFPLGPWRFADVAI
                     VPLSYPVARVLDSAPDWERVDSAPASPLSKSGSGLWVRRSWRMNSR"
     gene            complement(14058..15224)
                     /locus_tag="VLI40_00680"
     CDS             complement(14058..15224)
                     /locus_tag="VLI40_00680"
                     /inference="COORDINATES: protein motif:HMM:NF025736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HSU95710.1"
                     /translation="MRASPLFTLTDPYVGPAAFGALAVHGILCPSARRRIFVLRAGVL
                     LEILRFALLVHRQIALDVIVFSTGYGFLTAALADFVVHKDWRPAALAALVPVGMASAR
                     LGLGDVVQRLTPLTYDGVLFALDATLRVPFSRLAGGLFASVPLIAALSLIVYAALPGA
                     IATGLAYEEYANERGLRRGVGTNLLLAYMVSGTLAALLYVLCPATGPSHAFANSFPGS
                     LPDPANVPLYLAPLAPASPRNAMPSLHVAWAILLARSAAGARVSVRAAAWIFAAVTIL
                     ATLGSGEHYVFDLIAVAPFLVVLEAATAHRFISFRSRIPALVCGVVLYALLMVVIKHG
                     TTSIPVLFGAPSLAWMLVAITVAVPGMFALRPVKSIASDVLHDDRVTGAVLADL"
     gene            15814..16536
                     /locus_tag="VLI40_00685"
     CDS             15814..16536
                     /locus_tag="VLI40_00685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95711.1"
                     /translation="MTRAHTLALALLASIGSASILQAQALPAGSVDLDSRVYAKVYIS
                     VGDALAPPYPIQGIPILLVSATNDTIRLATDGAGATRVYLPRGSYHLLTADMVRAGGK
                     DYRWNIPIIIAPGMRDVVLTAQNSAQLGSPTFAVSSGEVGTASTGAKIAVAPPKRPPV
                     EYAARRRVVDSSGFVWDVFEQEFNRGAVWGTSLALPDSESLLVFNRDEETRQIAQFPK
                     NWHSLPNDELAQLLEKAKRVRP"
     gene            complement(16678..18186)
                     /locus_tag="VLI40_00690"
     CDS             complement(16678..18186)
                     /locus_tag="VLI40_00690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95712.1"
                     /translation="MTDSRTKSWRALLFALAMLFITGTLAPLADADLPMHLALGEWII
                     RHGALPHTEPFAWTRTGAPYFAYSWLAEVTFYELLEHGGPVALRMLNGAIFSGAFLAM
                     FEAARAMRASREACWLAGALNVLVLLAISAFLRPQALLFILLPLAWTTIVRAIERPHA
                     RGPLVALLLVAALTANTHILFPLVAVPLVLCGLRPVSRTRGAALVSVVIAGMLLSPYG
                     LNWGSVFLLNFRPNALFGPRTLIAEYRPGFSGGLLIGVILASLPLIVAPTLSINERKI
                     YGALWLVGLVAFALRAKALIVWWFVSLPMVVTGCMLVLAGASRAFRKFPMLLTVALAF
                     SGSYRLVVGGAAGTPSLQDAWRAEHREPRRSLSSPAAMATEPLLAQLARLDVPVRLLT
                     VFDLGSYVPWRAPLVSESIDGRTIFPDSAALPDAVLMPLERAHALGPWQSANAAMVPL
                     AYPVAAVLDSASGWLRLATSAQEPMGAIGLWVRRDWYAGACKPSCPALDIAR"
     gene            complement(18642..19232)
                     /locus_tag="VLI40_00695"
     CDS             complement(18642..19232)
                     /locus_tag="VLI40_00695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95713.1"
                     /translation="MHVANRRASALRSYQVRVKLEMEDEMTGIRTGEVDTFAYAAPPV
                     ARPRATVSLRARLRRGFAMLVYSTGYPMLALALWIGARDGNWVRASVLVALGVIMSFI
                     GWALLSIYREGTSGGASPRYKRGEAVTSVFLVLYNRAGALVVIIGSYAVAAASNGWPM
                     PRSFMGWFFLVSIPLFVSLAIPLASATPRKDPDIYL"
BASE COUNT         4396 a         5875 c         5767 g         3615 t
ORIGIN      
        1 cagctcggtg aaccactaca aactgaattg caatgccgga acgacgagtg tcgggcccgg
       61 cgcgttctac gacgccgcag gatcaccgat catgtccatg tcgaacggct acacgccgct
      121 gcagcagccg agtagtggaa ccccggctga gcagattctg acgcgtgtgt gtgcggtgct
      181 tcgagcgcgg cagcgatagc acgcggacat tcaaatgcgt gcaggatccg ctttgcgccg
      241 attggtacgg tcttcgatgc tgattacgaa tctctacggc ttcgtcaact tgtgaaacga
      301 aaggctgatc gtttcgccag actgcgaatt gacatctctc gcggcagcta cgtaaccgac
      361 ggagccactc accgaaatcg tgtgatgacc tgggctgacc gaaaccgtaa gaggtgcgag
      421 cccacgtgga atcccatcaa tcgtgactaa cgcggggccc ggatccgccg agacctgaat
      481 gatggctgcc tgggatgcgt tcttaccaaa ccagcgcgag aacgcgtttg tgacccacga
      541 ccaactgccg cgaagtgcgg ccctgctctc agacacagct tttgagccgt ccggcgcgtc
      601 cggcagtcgg cttccatccg gtatgctcga acgcagatga atgatcgcgg ggttgccatc
      661 tactggattg gacgatccaa tggtaaccgg ctggcttgcg cgtgttgatg gaagtcggct
      721 ttcacccgct cgcgcgggag gtgagctggg gcttgcggag ctgacgttgc tcgctgctgc
      781 tgatggcgtg gcggaggagc ccaccgcgga tttcgtgctg ggggaagtca cgcgatcggt
      841 gggtaaaccc agctttactt ccggaagtga tgtgcgcctg gctactgcgt tccacgcctc
      901 gcgaacatgg tatcgcaccg tggggtcgac cgccgtcgcg acggcaaaga ccgcgaacac
      961 tgcagcgatg atgccggcaa cccggtggcg ccgcttgagg acgaaccgat ggcgtgtggt
     1021 tggcaagcca cggccgcgat ttggacccac gccggctaac gcttcggcga attgagtagt
     1081 tgtagcgaac cgattcgaag cgttcgcgct caacgcctgt ctcaacgcag cgttcacgta
     1141 gagggggata tcctttcgaa gtgcagtgtg ggcgtgtacc tcgattgggg gcacggtatg
     1201 aatacccacg tgcagatcgt cgcccacgcg ccgctcacca gtgaggagct cgtaggctat
     1261 cgccgcaagt gcgtactgat cggcgcgtcc atcaaccttc tgcgagcgcc gctgctcggg
     1321 cgccgcgtag gccgccgcgc gcgaggcgcg cgtgccatga attccttttg cggtgagcag
     1381 cgtatcggtt acgccgacgt cgctgatgag cggatggccg gccgcatcga atagaatatt
     1441 ttcgggcgtg aggccgcgat gagtgatacc acgcgcgtgc aaacggtcca gtgtcgacgc
     1501 aagcacgagg acgagccttt gcacctcgtc gagtggaatg gggccccgcg cgtgtagcag
     1561 cgcagccaga ttgcccgcgc gcatgagcgg catgacgaga atgatgctcg agtcgtgctg
     1621 ctcgattccg agtggcgcga gtattccatc cacggcaact gacgcgctga ggcgaacgtc
     1681 atcttcgagt cgttgggcca gctcggaatt tacggaggtg tcgagatcga gcagcttgag
     1741 cgctaccgcg ccaggtattt cgataccaac tgcgtgatag acggtgctga attgaccgcg
     1801 cccaagctgc tgctggattc gatagcgcaa gcctagcgtc ctctcgagat gcacacgtgc
     1861 atcatcggtg ccggcgcctg tggcatcgaa atcgacggtt ggaattggag tggtcctatt
     1921 caccgctcat tgccaaaacg ggacggagcc gcggcccaaa agcgccgacg cgctgctgat
     1981 acgatgcgta ttctggaaac acgtcacgga gtacctgctc ctcataacgc attctcacac
     2041 gaacgatgat cagccatcct accagtgcag cggcaaacgc aacagtcgcg tgcagcatcc
     2101 agattccgag atactcgaga agctgggttg cgtagatcgg gtgcctcgca atgcgataag
     2161 gccctttcgt cgcgagctcg cgtgcggcgg gctcgatgct gaaggatcgc cgcatgtacc
     2221 agatcggcca gaaggagagc accgtgccga acaaccaaaa cgaggctccc gccgtccgca
     2281 gcagaggtga ttgcgtgatt gtgaagaagc tcggaatcca gcgaatcgct atccagatga
     2341 agagcggaag aaaaaaggtc gccacgtacg agatcaggcg cggcataagt ccttgcagtg
     2401 atcggcgagc gcgattccgt aagaggaatg ttgcagcaac cgccacttca taaagcatgg
     2461 gcggaaggag caagagaccg gagcttcccg acgtgagcgg aatcgtgatc gcgaacgcac
     2521 agaaaaacag gcagcctgcc cagtcggcag tcgtgcgcga tgttcgcttg agcgtggata
     2581 ataccaactc attggtctcg cccacgattc ctactcccgc tattgcacta gtgcgatggc
     2641 gccagtagtc ggacccggtg tcgcgctgaa gctcccggtc gtagccatgg ttgagaaaaa
     2701 tccggtgatc tgatcggcgg cgctgccact tcccgccgta aattgcgtta ttccgaacac
     2761 gccaacgtac ttcacccgaa cagtgaggtt ggctcccgtg gctccgttgt tctgatccca
     2821 aattgccagt ttgaccttca ccccagggca tgcgaaggtt tttggattgc cgttcacacc
     2881 gcagagtgtc tgtatggctt gagcggtttg gccacttccc gcgcccggat caccattgag
     2941 aatggttccg ggtccgatct cgaggttcgg gcatgctcca gtgatggcgt tcttgtaggc
     3001 gttgtttcca ttccacggac tgcctaccac cacctgcgca atatttcccg gcgtgagttg
     3061 gttggtagtg ccgttcagta atgtcacctg atttgccggt gcggccatgc cactgagcgt
     3121 ctgaatgtct tgcgcggtga gattgtaact gatgttcttg gtacccgccg gcgggtaaag
     3181 cgcgtcgagt aaagtctgat agctaacggc ccatggcttc agacagtcgg ttgtgcttac
     3241 gtagccgatc gccccaatag cgcgagcatg aacagtctga cccgtaccgc cgaagacccg
     3301 agcgaaggta tacgatcccg gataatgtgc ggtggcccgc accgcattca gcgcgggatc
     3361 ggtccacgta ccaagcgtgg tgaaagcatt cgtggcaaag ttccacgtgc ccggttccac
     3421 atccgacgca gccaccgtcg gagccgtatg ctctacgaca ttattggtcg cgtattgaat
     3481 cgcgatcgta gtcgcgttcg ccggacgctt gtctttgact tccactatcc ccgcaatcgc
     3541 ggctgcatcc gccgctgtct gcaactcggc gcgcatcacg tataaacgcg atgcgtcaac
     3601 cgcaatgccc gcgaatccaa tgagtacggt catcatgatc gccacgagca caagcgtcgc
     3661 tcccctcttg ctgcgcaaag tcggcattcc gccctcccag ttcgaggcga cgcagatgcg
     3721 ccgtcttcgt tcgctaccct gttcccgagt tctcaagaaa gctcaacgct gtgcgatacc
     3781 tctgaacatt gcagcaatgc tcatcattgc gggtccgagc aggacgacga agattgccgg
     3841 aaagatgaac accgcaaggg ggaacgtcat tttcagcggc gccgttgccg cccgcttctc
     3901 cgccaattgc tttcgttttc gccgcagtga ctctgcataa acgcgtagga ccgtcgcgat
     3961 ggaagtgccc cacttctcgc attgaatcat gttcgccgca aggcctcgca gatcctccac
     4021 tcccgttcgc tcccacagac cgcgaagtgc ctgctctcgc gggataccag cgttcacacg
     4081 acgatggacg atcagcaact cggccgcaag atctgggtgc aacgttgcca tctccctggc
     4141 cacgcgcatg attgccgcgt ccaggctgac gccggcctcc acacagacga cgaggagatc
     4201 gagcgagtcc gggatagccc ggcgaagaag ctcctgccga tggcggcctc gacgatcaat
     4261 gtacgccggc ggaagcacca acccgatcag cacggagatc gccatcacgg ctacgaatat
     4321 caacgcgctc tttctcggga cgagaagaaa cgctagcaat ggtaccgcta gggcgcatgc
     4381 caagcgtgtc atgaaaaaaa tcactggagc ggcaggtgac tcgaaccccg catgcagcag
     4441 cttgtccacg gcatagttct gcgaaaacga ttcggggact ttcgcgacga gccacttcgc
     4501 tatccggccg ccaatggatt cttccgttga ctttagaaga atggaatcat cagcgaattg
     4561 aattccggcg cgatccatca gtcgtcggcg ctcgcgatct cgcaagatcg cgtatgccgc
     4621 cacacccacc gccagcacga gcacgccgat gagcgcaatg agaggagcag gaataagggg
     4681 catgattgtc ctcagatatc gatctgtccg atctttctca gtacgatgta gccgagaatg
     4741 atcgaaacca ctgcgtacag gagaagcagc ttgcccattg gcgcggtcca taacggcgac
     4801 atgtagttgc gattcgccat cgtcacaatg atgaagagca cgatgggaag catcgccagt
     4861 acgatcgccg acatcctcgg ctccgccgtg agggtgtcga tctgacctcg caggccgacg
     4921 cgctctcgca tgagtgtcgc cagattagtc agcacttccg cgaggttgcc cccagtttcg
     4981 cgttgaagca ggagtgccgt cacgaacatc ttgcaatcga gcgtgtccac gcgctcctgc
     5041 agcaacagga gcgcatttcg aagctccatt cccagtcgct gctcgtcata cacgcgcgcg
     5101 aattcgggtc cgagcggttg gggcatttcg tccccaacga acttgatcgc cgcctgaatc
     5161 gagtagccgg atttcatggc attcacgagc atatcgatcg actcgggaag ttgcgcctgg
     5221 aattccttga gccgggcagc cgccttccgc ttgagattca gaaatggaag gtatccgaat
     5281 gcgagggcca tgaagggcgc tgcaagtatt ccgatacgac gaccgatgaa aaatccgatg
     5341 ccagcccaca gaagcgacag caagacgaat tcgccgacgc tcagcttgga cccggcctta
     5401 tagatctgtg cggatatcgt ggccgtaaaa tctcgaccgg caagcattcg attcagcgtg
     5461 ccgatgtcgc tcgccttctc ctcctttaga atgctcgagg tcgcaccgat ggcaggagcc
     5521 ggcgcgaggc gtgcgcgaaa cgcttccgcg gcgaccagtt gtcgccgatt cacgagcaca
     5581 tagccagcta tgatgagcag gatggtgccc agaaagacgc cggcaagcac taacaacatg
     5641 atcagcgctc cgcgaacaag tgcggtggaa gctcgacccc cgcgagctgc aagcgctcta
     5701 caaacgcggg acgcaccccg gtggcttcga actgtccgat cactcgtcct tccgcagaaa
     5761 cgccacggcg gcggaaacga tagatctcct gcatcgtgat gatctctccc tccatgctcg
     5821 tgacttccgt gacacttgta acgcggcgag acccgtcggt caggcgagac acctggatga
     5881 tgagatccag cgccgaagcg atctgctcgc gcatcgctcg attcggcaga tttgtgccgg
     5941 caaacaggat catcgtctcg agacgcgcca gcgcatcacg aggcgtgttc gcgtgaatcg
     6001 tggtgagcga tccctcgtgt ccggtgttca tcgcctgcag catatcgagg gcctcggccg
     6061 atcgcacttc accaacgata attctgtccg gacgcatacg cagcgcgttc ttgacgagat
     6121 cgcgcgcgag aacctccccc cggccttccg agttcggagg gcgcgtttcg agacgaacga
     6181 cgtgctcctg ctgcattcgg agctccgccg cgtcctcgat ggtgatgaca cgctcactgc
     6241 tgggaatgaa cgagctgagc gcattcagga gcgtcgtttt cccagcaccc gttccaccgg
     6301 agatcaggac attcagtctg gcacgcacac aaccggcgag aagattcacc atgtcatcgg
     6361 tgagcgcgcc gaactcgatc aggttctgta tcgtgatttc tgcgccaaaa cgccggatgg
     6421 acagtacagg tccatcaatc gccaatggtg gaatgatcgc gttgacgcga gaaccgtcag
     6481 gaagtctcgc atccaccatg ggtgaggact cgtcaacacg gcggcccaca cgactcacga
     6541 tacggtcgat gatcgataaa agatgcgtgt catcgcggaa cgaggtcagc gcgcgggaca
     6601 gctttccgtt ccgctcgaca taaatctcct tcgctccatt caccaaaatg tccgtgactg
     6661 tacgatcgcg aaacagcggc tcgatcggtc caagtccgat cacctcataa acgatttgct
     6721 cgacaacctc ttcacgttcc gcttgactga aaggcgttga ctcacctcgc aacagttccg
     6781 agacagcgtt gcgaatttgt tggacgatca cggcttcatc cgagatcttc tccaatgctt
     6841 ccagatcgag tctttcgatg aggcgtcgat gaagctcgac cttgagctgc tcgacagctg
     6901 tcagcgtggc ctcatccgag cgaagaccag agtacatacc cgaggatggg ccagcactat
     6961 cgacggcggc tgcccccgag gctcctccgt tcgacgatga tatggacgga gtgtgaatcg
     7021 gggtcggtac ggtgcgacca agcagtcggt cgcgaagagt cggtgccatt atttcctccc
     7081 acgccggaaa agtcgtccca atcgcgaccc gctctgcgta gcgatcccct tagccggtgt
     7141 tccgccattc atgcgaccgg ccaatccgtc gaagctccaa ctgagatgcg aggatgcgtc
     7201 gaaatccgcc accggcacac cctttgagag tgcacccgag agcgtacgat aatcgttggg
     7261 gagtttgaaa aatatctcac ggccaagaac ttcactcgcg tcggcgagac tcacggcatc
     7321 cgacgcctga tgtcgattga cgaccacatt aaccttgtcg gcttcatagc cgagtcgttg
     7381 aaagagtgcg agtgtgcgct gcgtgcttcg aagcgccggc acattgagct gcgtcacgag
     7441 gatgacgcga tccgccgagt ccagtgccgt cagcgtacga tcgctcagcg catgctcaca
     7501 gtcgatgacc gtgaaggaat ggtgctgtcg aagctgttcg atcagtgtgg tgacggaggt
     7561 tgcgtcgaac gcatcggcgg actcaggact ttccgacgat ggcaaaaccc atactccgcc
     7621 agagaccggc gtcagcagcg atcgtaggag ctccgaatcc agccgatcga tctttcccag
     7681 cagatcactc atgtcgtact gaggcctgag atcgagcatg gcccgaagat ccccgcctcc
     7741 gccaaccagg tcgacaagag cgacgtgccc ttccggatgt gcctttgcca gtgcgaaggc
     7801 cagattaacg gctacgctgg tgcaacccag tccgcctttc gcactgtaaa tcgcgatcgc
     7861 gcctcccgac ttgttatcgg tatgcgttcg ccgcatgagt cggtcgaccg cgcccgaaaa
     7921 ttcctttgga tcaggtggat acaataagaa ctcgttgatt cccgaccgca tggcgcgaag
     7981 aatcagctcg gaatcggact gtactgccgt cccgatcacg aatgtgccaa cacggcgcgt
     8041 ctcgcgatcc aatgcggaga gctcgatgct ccccagccct tgaagaggca gaacgacgag
     8101 atcgaaacgc tcggcgcgca aacgtgccgt cgcatcgttc agactcagcg ccgattcagc
     8161 tggcgcgaat ccgaatcgat gcaacaccgc gttggcgatg tcctgcggtc cggctgcgcc
     8221 ggaaacgatg agagcctttc gagccattgt tctctcctac ggcttcgcta gcgacgaagg
     8281 aaggcgcggt tccagcgcct cgtgcgcagg caacaccgaa tcgggcgaaa agtgcatcac
     8341 atcctgtggc cgaggatgca tggggtccgt aactgtaggt gtcacaatga tgagaagttc
     8401 agtttcattt cgctgccaag tcgtgctcga gaagaggctt ccgaggatcg ggatgtcctt
     8461 gagaaatgga atcccatcct tcgttttttg ccgttcatca tccatcatgc cggaaatgat
     8521 gaggctctga tcgcgacgaa cgtccaccgt gctctcgatg tggcgcgagc ggagagcagg
     8581 caccttgaaa ccggaaatcg tcaaggcatt gttgaaatcg aggctggata cttccggtcg
     8641 caggtgaagt ctgatcacac tgtcgctcac gacctcggcg acgaaattca gcttgatgcc
     8701 gaattccctc cacaggatcg taatcgtagg tataccgctc gcgctgtttt gagcgacagg
     8761 aatggggatc tcaccgcctg ccagaaaact cgccgtatcc ttgttgccag ccatgagtgt
     8821 gggctcggca aggattcgcg cagttcccgt ctgctcgtcg gcgtcgagaa gcccaagaag
     8881 cgtactcgta ccgaaatccg tcaacacggt cccgaaaccc gcggcgttcg ggagcgtgaa
     8941 gctaccagtg tttccattga atccgttatc cgtgttgaac tgtccggtgc caacgcgcgc
     9001 atggttgcct cgatacaatc ccgacaaacc aaggttgcga aggaaatctc ggcgcacctc
     9061 cgcaaatttc acggcgagca cgacctgctg ccgatccggc ggggcgtgaa cggagacgcg
     9121 atagtgacgg agcggcgcat cggcgagcca gagaatgaca tcagattcac cggatccgcg
     9181 gccattgatg acaagagcgc gcgaccccat gacgagcaca tcggccacgt ccggacttgc
     9241 gactgagacc tgagtgatgt tgctcgcagt cgtgatggga tacgaacggc ctgcaggcag
     9301 atcgacgcgc agcaccgcag tgtcgggcgt ctgcgcagcg accgccgtgg cgcacaacaa
     9361 caccccacag cacgccgcag ccaacacagc gattcgcgcc atccgtcggt gtccagtcaa
     9421 cgagccggtc ctccagctag agaaaacatt gcgccgaccg aaacacgggt gatcgcttgc
     9481 aatgccgaaa gtcacagggc tcatgtggag tccttctgct cgaacttctg ctgcgacagc
     9541 ttgtcgccac gatagactcg aacaacgacc gaatcgcgcc tgggatccgc gaccaccgtt
     9601 cgcacgggct caggcgccgg catcacgggg gcgggacgct cacgaacgtg gcgccgctcg
     9661 ggtttggatg ctggctccgt taccatcgca cgggatcgca attgggccaa cacatccgtc
     9721 gaagtggcac cggcagtcgt gacggagtcc ggatcgccat agccgcgcaa cacgagctga
     9781 atcattccct cgttcatggc gacggcaagc tgctccgcct gttgaggcgt gacttcgagc
     9841 gtggccgttg tcgcctggat cggtttcccg tcttcacccc gttcaacctg cgtgccgacg
     9901 gacaacacac gcatgttgtt catgaacatc ttggcttgct ccttcgtatt ctgcgtctgg
     9961 ttcgcctgca gagtcacgag aacatcgaca cggctgttcg gctgaatcag gccgctcagc
    10021 ccagcaacgt cgttgatctt gaccgccatt gctcgcttgc ccggtgcgat tttcacctcg
    10081 aggccaggac cagtgccggc gggtgccagt cgaccaggta cgatgggctc gcccttgaac
    10141 acggcgacgc gcgcgacccg tccaatggcc gagtcgatat tcgcgaaggc gctctccggc
    10201 gcggtaccca cgggccactg cgtcgtggag agcgcgaggc gctcgagctt ctccccctcg
    10261 gacaaatccc gcgcggcgac gacgaccgat tgcatctgga cctgactact cagcttggcc
    10321 tgttgcagat agcgatacac gccaaacgtc gccaccaggg cggttagaat cgctgcgaag
    10381 agaaccaggt tgtagcgccg ctctgccata acaccgccgg tgtgtcggga ttgtgagtcg
    10441 tgaagtgaac cgtccaacca atcaatgacg cttagggagc cccttcccat cgaaacgttg
    10501 cggacgggga catcgtaatt gtgcctagtc caaaaatgcc tgccaggggt gtgatcggcg
    10561 taaacggata agcggtgatc ttcacggtga tcgactgcat gttcggtggc gcacccgcaa
    10621 acgtttccgt gaccgtgggt gcaggagcat tgacatctat tgcagtcgtg tacgcggtga
    10681 cggcatttgt gactgccgtc ttcgaagcgg caatggtggg atcggggctg atctgggtag
    10741 aagccaaccg ggctccctca cgaacggcgg acgtcaaatt gttcgccgtg tagagtgccc
    10801 gcccgaaatc gacgatgcca aaaacaatga gcaacaggat cggcagaacg attgcaaatt
    10861 cgaccagcgc agcggcgtca tcggaatcgg caaaaatccg tagtctcatg gtgaagcccc
    10921 ttaccggtag attaggtgtg gaaaccaagc cgtaactacc aatcccgccg ccatggcaac
    10981 gccgtatggt agcgaaatgc gatcttttgg agcatgtcgt tcgacagcca gctcgtcgtt
    11041 cacgttggat gcactcgcag tagcagcatc gaaaggctgc gagaccccga ccgccggacg
    11101 tgaactccac aggagccaga gcagggcgat cacaccacca aacacggctg atgccaaggc
    11161 agcttcgaag gccaaccaag gaccaagcca cgcggctgcg gctgcgaaaa acttcacgtc
    11221 gccagcgccc aacatgcgaa gcgcccagaa cggaaaccac atgatcagtc ctgcggcgga
    11281 gccttccaaa attcgcggaa gtgcctttgc tggtcccatg gtcagcacag cgaccacgct
    11341 gccgatcaac acgatcgtca aggcgaacga attcggaatc ctgcgaaatc tcagatccat
    11401 tgccgccgct atgccaacca gaatcgtaaa cgtcaccagg atcggtaact ctgcttccga
    11461 tctcggtagc gtagcggcaa acatgtttac atcgacctcc tcgagcgcga acgcaatggc
    11521 gaactaccgc cattgcattc gtctcgagaa gatcaggtca cgcggggagg ttcgtcgcga
    11581 tgttgttgaa aatggtgttc gcgttcgtac cgatcagcgt taccgcgatg atgcaaacta
    11641 cggcaatcag tgacagcatg agcgcgtact cgaccatcgt agcggcttcc tcattcttcg
    11701 cgaaatggcg aaccagcttg ttgatgcgtg tcatcttgcc tccaggagcg ttgggagtga
    11761 actgcaaaca acgccggcca tcatggacgg cgaatcgaga atgtgagaat caattacagc
    11821 tgcctgcgca actcacggtt gcccttgcta cacatcggac gagcagactc agcctaggct
    11881 ggaaggttcg tcgcgatgtt gttgaaaatg gtgttcgcgt tcgtaccgat cagcgttacc
    11941 gcgatgatgc aaacaacggc aatcagtgac agcatgagcg cgtactcgac catcgtcgca
    12001 gcatcctccc tccgcatgaa gctacgaatt agcttcccgg tgtgagtcat ctctcctcct
    12061 gtcaaaaggg gaaactgtgt ggaaagaatg gctgcctacg agagcggcca tattagttgg
    12121 gtccaaccag aatgcaagac tcgctcgcgc ggtttgatgg caactttttc ccagcagaaa
    12181 tgagtgggaa ttgtagcctc ctaccaggcc ttaaccaggc gatgttttac tcgcagaagc
    12241 ccggaagtga acgcgcccgc cgcggcccac cgattctcaa atcagtgcgg cacttcgtga
    12301 tggctcagca cgcctactgg aagagtctca aaaaaaatct gtatgcacgc gcgcggaacg
    12361 aaactgcaag aaagatttcc agaaatcgac agccgtgtct cgcgtcgtaa cgaattattc
    12421 gagcagggca accgggttgc cgtggctaac tcgcaacaga tgtggtgaac tatgtcacaa
    12481 tgcaggtcag atcggcgctt tcgacaaaac gaatcgttac agctggcact agcgtgaatt
    12541 cattcgccat gaccgtcgca cccaaaggcc gctgccagat ttgctcaggg gacttgcagg
    12601 agctgaatcg acgcgctccc aatctggagc cgagtcgagc actcgggcga cagggtagct
    12661 cagcggtacg atcgcgacat cggcaaaccg ccacggtccc aagggaaatg gaccgtcctt
    12721 ggcgacacgg tacgcgtcgg gcgcagctgc agaatccgga aagatcgctc gcccgtccac
    12781 cgacatgctg tacgccggaa gccgccatgt gaggtacgag ccgtagttga atacagtcaa
    12841 gaccttcgga tgtccgctcg gatgggcgtg tgtgtcgagc caggtcacca agctctctac
    12901 gctccgacgg gcgggcgtac tgagatcgcc gccaaacgag tcggagtgcc acgccaatcc
    12961 gaaactcatg acgaggggaa gcgaggccat tgccgcgagc gccaggcgac gctggaagcc
    13021 gcgttgcagc tgcgggatgc gccgaatcaa gtgcacgagc gcgggcagtg acgcaaacca
    13081 ccacaccaat agggctcgcc cgaccaacgc gaaggcgaac atcccggcga accacatcag
    13141 tccaaaaatc aatcgctcgc gaggcgtggt atcggcatcg cgcaataccc acggaaccgc
    13201 ggcgagcaag atcaccaaaa taaagcaaat gggtgaaacg cgggcgaaag taaatcccgg
    13261 ggtgaactcc tggatgccag aaggaaagtc gagcatcgcg tttcgctgaa aatagagatg
    13321 gaacaccgat ggccagctca gcgcgtaggg cgagatagcc catcccgcga gcagtgcaac
    13381 cgcgatcatg cctccacgct tccacggagt aggcgcccgc gtgagagcga tcgcggcggg
    13441 gagtgccgta aggggaaaca ggagatgaga gttggcagcg agggaggcga taacgatcaa
    13501 cgctgcgatc caccttgcag gattctttga atcgagcact cgcaagcccg ctgcccatgc
    13561 gagcactact agaggaaaaa gcagtgcctg cggccgaagg taggcagcga tcaggatggt
    13621 cggcaacaac gagagaaata tcaggtaaag cgcactccac gcgcgccatc cagcaacgcg
    13681 agcgagccag agcaccgatg ctccgccggc cacaaatgtc aggccgtgga acactcgaag
    13741 ccccagggct cccacgtgtg catacagcag gtaataaagg agctcaggta gccaggaata
    13801 ggcgtagtaa ggagccccgc tccgtgtcca ggcgaatggc tccacaaagg gaacggcatg
    13861 atgtcggaaa atccacgctc cggtagccaa gtgcatcggg agatccatat cggctagcgg
    13921 cgcagacgcc ccgagaacga agagcagcaa cgcggcaatc ggaagccacc atctccagtg
    13981 cgcaccgagc tcggacgacc aactctcaca gtgctccgga ataccggata cgcggtgccc
    14041 tctgcctctt tctgacgtca caggtctgcg agcactgcgc cggtgactcg atcgtcgtgc
    14101 agaacatcac tggcgatgga cttcaccggg cgaagagcaa acattcccgg gactgccacg
    14161 gtgattgcga cgagcatcca cgcaagtgat ggcgcaccga acagtaccgg aatcgaggtg
    14221 gtaccgtgtt tgatgacgac catcaataga gcatacaaaa ctacgccgca cacgagagcg
    14281 ggaattcgac ttcgaaaaga gataaatcgg tgggccgtcg ccgcctcgag cacgacgagg
    14341 aatggcgcaa cggcaatgag gtcgaaaaca taatgctcgc cagagccgag cgtcgcgaga
    14401 attgtcacgg cggcaaagat ccacgcagca gcgcgaacgg atacgcgagc accagcggca
    14461 ctccgcgcga gcaagatcgc ccaggcgacg tgcaaggagg gcattgcgtt tcgcggcgaa
    14521 gcgggagcga gaggagcgag atagagcgga acattggcgg gatcgggaag cgagccggga
    14581 aacgagttcg cgaatgcgtg cgacggtccc gtagccgggc aaagcacata aagcaaagcg
    14641 gcaagcgttc cgctcaccat gtaggcgagc agcagattgg tgcccacgcc acgacgaagc
    14701 cctcgctcat tcgcgtattc ctcgtacgca agtcctgtag cgattgcacc cggaagtgcc
    14761 gcgtagacta tgagtgaaag tgcagcgatc agcggaacgg aagcgaaaag gccgccggcc
    14821 agacgggaga atgggacgcg cagcgttgca tcgagagcga agaggactcc atcatacgtc
    14881 agcggcgtaa gcctctgtac cacatctccg aggccgaggc gcgcactcgc catcccaacc
    14941 ggaacgaggg cagccagggc agccggcctc caatccttat ggacaacaaa gtcggccagc
    15001 gcagcggtga gaaatccata gccagtagag aagacgatga catcaagagc aatctgtcgg
    15061 tgcacaagca acgcgaatcg caggatctcc agtagcaccc ccgcgcgaag aacgaagatg
    15121 cggcgccgag cagatgggca gagaattcca tgcacggcca acgctccaaa tgccgcgggt
    15181 cccacatagg ggtcggtcaa cgtgaagagt ggggaagctc gcacatcgcc gctgacccat
    15241 tccaaggtgc ccaatagtgc aagggaccaa agaaaagaaa tgggcagcaa cagttgacgg
    15301 cgcgtactcg cctggctcat gagtcgattt cggaggagcg atcgagagac aatggaaaag
    15361 ttcccgtgcg gcgagctgct ggattgctca ggctaggctg gcgccatact ccccaagcta
    15421 tctggccatc gcgacttagt gttcgctcgg ccgttgagag gaagacgatg gaggcaggaa
    15481 atcctcggca acgagactgg gtgcaattcg aatcacgacc cgcaccagcc ggcgggatcg
    15541 tgcatccaca atgccaggct tgcgtggcgg tgtccagcct gcctgtgtcg aatcgcggct
    15601 gcgccgcgcc acacgatgtt gcgagtaaac cgcactagcc gctttgaagg gcgacacgag
    15661 ggtgctatgg tcgcgcacgc tcgttgcgag cggcagtaag gggagctatt ctcgccttcg
    15721 tgcggcgatc gcttcgtgaa aacgcatgtc aggcaccgga tcctgagaca ctctttgtca
    15781 tcgaccactc tagtcatcat cgactaccct acaatgacgc gcgctcacac cttagctctc
    15841 gcgctactcg cctccatcgg ctccgcatcc atccttcagg cgcaggccct gccagcggga
    15901 agtgtggatc tcgatagtcg cgtctacgcg aaggtttaca tcagcgtggg cgatgcactc
    15961 gctccgccct atccaattca aggcatcccg attctgctcg tctcggcaac gaacgatacg
    16021 attcgccttg cgaccgacgg agcgggtgcg acgcgtgtct acctgccgcg ggggtcgtac
    16081 catctgctca ccgccgacat ggtgcgcgca ggcggcaaag actataggtg gaacattccg
    16141 atcatcatcg caccaggtat gcgcgacgtg gtactcacgg cgcaaaactc tgcacagctg
    16201 ggttctccaa catttgcggt gagctcgggt gaagtgggca ccgcgtctac cggtgcaaag
    16261 atcgccgtag ctccacccaa gcgccctcca gtggaatacg ctgcacgcag gcgtgtagtc
    16321 gactcatcag gcttcgtgtg ggacgttttc gagcaggagt tcaatcgggg cgccgtatgg
    16381 ggaacctcgc ttgcgcttcc tgactcggaa tcattgctgg tgttcaaccg agatgaagag
    16441 acacgccaga ttgcacaatt tccgaagaac tggcattcgc tcccgaatga cgagttggct
    16501 cagctgctag aaaaggccaa gcgcgttcgc ccctgagctg gtggatgtgg tcaccgtcgc
    16561 catctagcga cgcgcgtacc tgcccttctt cgatggcagc accgcgtttc attacgctca
    16621 cctgccgttg ccacccgact cgtgggaagc ggatcgagaa cacctttgtc tcgatcgtca
    16681 tcgcgcgatg tccagcgccg ggcaagatgg tttacatgct cctgcgtacc aatcacggcg
    16741 aacccagagg ccgattgcac ccatcggttc ctgcgcggac gtcgccagac gcagccaccc
    16801 gcttgcagaa tcgaggactg ccgctaccgg atatgctaac ggcaccatcg cggcattcgc
    16861 actttgccac gggccgagtg cgtgcgcacg ttcgagaggc atcaatacag cgtccggcaa
    16921 cgccgccgaa tccgggaaaa tcgtgcgccc gtcaatcgat tcggagacca gcggcgcgcg
    16981 ccacggaaca tagctcccga gatcgaacac ggtgagcagt cgaacaggca catcaagacg
    17041 cgcgagctgc gcaaggagcg gctcggttgc catggcggca gggctagaga gtgagcgcct
    17101 tggctcccgg tgctcggcgc gccaggcatc ctgaagcgaa ggagtgcccg ctgctccgcc
    17161 gacgacgagc cgatagctac ccgaaaacgc aagcgccaca gtgagcagca tcgggaactt
    17221 tcggaacgcg cgagaggctc ccgcaagaac gagcatgcag cccgtcacga ccattggaag
    17281 ggacacgaac caccagacga tcaacgcttt cgcgcgcaga gcaaacgcga ccaagccgac
    17341 gagccagagc gcaccgtaga tttttcgttc gttgatcgac aacgtcggtg cgacgatgag
    17401 cgggaggctg gccagtatga cgcctatgag caacccgccg gagaatccag gccggtattc
    17461 agcaatcaac gtccgtggtc caaagagcgc attgggacgg aaattgagca gaaacaccga
    17521 tccccagttc agaccatacg gtgagagaag cattccggcg atcacgacac tcaccagggc
    17581 cgccccgcgc gtacgactga cagggcgcag tccgcagagc acgagcggaa ccgccacgag
    17641 cggaaacaga atgtgcgtgt ttgccgtcaa cgccgccacg agcaggagtg caaccagtgg
    17701 ccctcgggcg tgcggccgtt ctattgctcg cacgattgtc gtccacgcga gcggaaggag
    17761 gatgaaaaga agcgcttgcg gccgcagaaa tgcagaaatc gcaaggagca cgagaacatt
    17821 gagggcgcca gccaaccagc acgcctcgcg tgaagcgcgc atagcgcgcg ccgcttcgaa
    17881 cattgcgagg aaggcgccgg agaagatggc accgttgagc atgcgcagcg cgacaggtcc
    17941 gccatgctcg agcaactcgt aaaacgtcac ctcggcgagc cacgagtagg caaaatacgg
    18001 tgcacccgtt cgcgtccacg cgaacggctc cgtgtgcggt aatgcaccgt gtcggatgat
    18061 ccattccccg agggcgagat gcatcgggag gtctgcatcc gccaggggag caagcgttcc
    18121 agtgatgaag agcatcgcga gcgcaaaaag gagcgcacgc caggacttcg tcctgctatc
    18181 ggtcacccag ccccagtgga tagcaaatag ctgcgatact ccagctcgtt cagcatgatg
    18241 atcgatgcgg tccggcgcag tggtgctacg gagcgtgtgg gtccgagaca agtatgggtc
    18301 gtgttatcga aggaaagacg gcgagttgct cggtccgcaa ctttcgctgc gagtgctgaa
    18361 gtgctgagca cgagcgacag cggagcatcc acggaggtgc ctcagctgtt tcccatccaa
    18421 tactccattc ggaatcaatt gatcgagatg ccagatttcg tgcaggccat cttcctttgg
    18481 gcatctagac gcaacgctct acggagcacc tcgctcgcac ttctagtatt gaaattgata
    18541 ctcgcgacca tcccagatgt atcgaccggc agattcgcgc ctgagttgcg gaaaggactc
    18601 agtgccgatt cgacaatgcg gatagactca ggttccatcc actacaggta gatgtcggga
    18661 tccttccgag gtgtcgcact tgcgagcgga atcgccagtg atacgaagag cggaatggaa
    18721 accaggaaga accaacccat gaacgaccgt ggcattggcc aaccattgga ggccgccgcg
    18781 accgcgtacg agccgattat cacgacgagg gcaccagctc tgttgtagag caccaggaag
    18841 acactcgtca ccgcctctcc gcgtttgtac ctaggcgatg ctccgcctga agtcccttcg
    18901 cgataaatgc tgagcagcgc ccaaccgatg aaactcatga tgacgccgag cgcgacgagc
    18961 acgctggcgc gcacccagtt gccatcgcgg gcacctatcc aaagcgctaa tgccagcatt
    19021 ggatagcccg tgctgtagac gagcattgcg aatccgcgcc gcaagcgcgc acgaagcgac
    19081 acggtggcgc gtggacgcgc gaccggaggt gcggcgtacg cgaacgtgtc gacttctcca
    19141 gtccgaatcc cggtcatctc atcctccatc tcgagcttga cacgtacctg gtacgaacgg
    19201 agtgcagatg cacgacgatt cgcgacgtgc accgatacgc cgatacgaca atcatctctc
    19261 cgacttcaac accgagtgag ccaagataga agaccgggat tttagcgcaa gtcgtcattt
    19321 atcaacgctg ttgcgtccgc ctgccgagcc ttgatttgca gggttagccc agcattgtgg
    19381 catcgtgagc gtattcatgg ccagtcgcgc acactcgcca ccgatgctga tccaaccgaa
    19441 ccctgcacgc accacatgtc gcgcgctgcc gccactcacc cccgccccgc cccaatccgc
    19501 tccaaaatct ccgcgttact cctcttatcc ccgggattcg cttcgatgtg cgcccactcc
    19561 accctgccat cgagtcccac cagaaaatac gccctcgccg agaaaaacct gtccgcgagc
    19621 agcaccccgt acgcgcgcga gatgtcgcgc ttg
//
LOCUS       DATIMD010000030         4022 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_298670, whole genome shotgun sequence.
ACCESSION   DATIMD010000030 DATIMD010000000
VERSION     DATIMD010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4022
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298670"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..756
                     /locus_tag="VLI40_00700"
     CDS             <1..756
                     /locus_tag="VLI40_00700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95714.1"
                     /translation="SVQRADGRGTGRAGGGDCGIARTGGDCLTIGRRVVARVIAPLAV
                     LGAIPFAACATGTGFGSQASAPVSGVPQADTAGITLLPPGYGSLRQDDLSLHIDAGTV
                     LVRALPLDEALIRLLTPDSYRALHDLKEGSRSQTEAIARRYGGRPVSVWLISFYGVEP
                     NARFTPGDVIVTSGGRDFRPYDILALTVGFGENRLRQRETQSALYVYDGDVQVNQPVS
                     IAYQGYVDNSWDQTLQVIERERAMVRARSGKPN"
     gene            771..1604
                     /locus_tag="VLI40_00705"
     CDS             771..1604
                     /locus_tag="VLI40_00705"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HSU95715.1"
                     /translation="MAILPLRKLAESPTEPLKRAFLEEIEDALDSSVDRNELCRKVLC
                     SLTYPEYADAWETAVEDESLPTATRLALLSLDPRNITLEPEYYAECDGTAFALTKPLL
                     WLWYSFDRTPLGGQNVDLGIRLRRILAQRIFRKCGENFKAFQNVEVSFGYNLEVGDNV
                     VVHRNVLLDDRGGIVLGDRVSISDFANIYSHTHSIVDQRDVTDAVTRIDNDVRITYHA
                     TVLAGVHVGENGMVGAGAIATKDVRPYHVHVGIPAKSIRVKPNAPSDVFHLTTIKPPK
                     Q"
     gene            1601..2149
                     /locus_tag="VLI40_00710"
     CDS             1601..2149
                     /locus_tag="VLI40_00710"
                     /inference="COORDINATES: protein motif:HMM:NF025946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HSU95716.1"
                     /translation="MKMDADRFLKGQTFEEFVTTATKYQELWNLGAKRATVPADVIER
                     FGTLRTPVRLIALNEDWCLDAVGVVPYVSKLAQENPLVEFRSFGRDANPDLMDAHLTG
                     TSRSIPVVIAYDADWSELGWWGPRPTELQKWVKTEGDLLPKPERYHYMRQWYARDHGA
                     TPLREITDMVMNALDARAAATG"
     gene            2243..>4022
                     /locus_tag="VLI40_00715"
     CDS             2243..>4022
                     /locus_tag="VLI40_00715"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HSU95717.1"
                     /translation="MERAARSTDEWILPVLRELLTPAQLAMIAKDTTTSKWCVAVSSG
                     FTTDDAILRAIARRTRMRVAGALTSSPQAVARVPERLARRYSILPLSVSASTIDVATA
                     NPYDLHCEQAIAFAAGRRVRMSLALPARITERLEEVYRPASVVERLLASVGPVSVHQV
                     EPEADSATATQLADGARERPIIKLVDHIVAEGIAARASDIHLESEEDAISVRYRVDGV
                     LRTAMTLPRAIGLPLVSRVKIMSRLDIADRLRPQGGRALVMVDGERVDLRVSTLPAAH
                     GEKVVIRILDARGGVRSLDALGFDDTDEARLTRLLETREGLILVTGPTGSGKTTTLYS
                     ALHSLVTRGLNVITVEDPVEYRIPGIVQSQVNEKAGLTFAAALRSILRQDPDVILVGE
                     IRDAETAAIAIQAALTGHLVFATLHTIDAASSITRLGDLGVDPAKTGTALKGVVAQRL
                     LRRTCPACARDSDEPIPPSLWDAIPNGARLKAGAGCDVCSGTGFRGRMAAVELLTMTP
                     ALTRLVVTGAPAPMITAAARAEGMRSLWTSGVARILSGETTAAEVSRVLDSEANRAGD
                     GDQTNGEQIDEWPLRDAGSPAESPYSK"
BASE COUNT          758 a         1219 c         1302 g          743 t
ORIGIN      
        1 tccgttcagc gcgcagacgg gcgcgggacg ggacgagctg gcggaggcga ttgcgggatt
       61 gctcgcaccg gaggcgactg cttgacgatc ggccggcgag tcgtcgcacg ggtgatagcg
      121 ccgctggcgg tgctcggcgc catcccgttc gcggcgtgcg cgaccggcac cggcttcggt
      181 tcgcaggctt cagcaccggt gtcgggcgta ccgcaggctg acactgccgg cataactctg
      241 cttccgccgg gctacggatc gcttcggcag gatgacctgt cgctgcacat cgacgccgga
      301 accgttctgg tgcgcgcgct gccgctggac gaggcgctga ttcgattatt gacgccggat
      361 tcgtaccgcg cactgcacga tctcaaggaa ggaagccgca gccagaccga ggcgattgcc
      421 cgccgctatg gcggccggcc ggtctcggtg tggctgatat cgttctatgg cgtcgagccg
      481 aatgcgcgct tcactccagg cgacgtcatc gtgacgagcg gcggccgcga tttccgtcca
      541 tacgacattc ttgcgcttac cgtgggcttt ggcgagaacc gtctgcgaca acgcgagacg
      601 cagagtgcgc tgtacgtgta cgatggtgac gtgcaggtga accagcccgt atccatcgcg
      661 tatcagggct acgtggacaa cagctgggat cagacacttc aggtgataga acgcgagcgt
      721 gccatggtgc gggcgcgctc cggaaaaccg aattagctta ccattctacc atggcgattc
      781 tccccctccg aaagcttgcg gaatctccca cagagccgct caagcgcgca tttctcgaag
      841 agatcgagga cgcgctcgat tcatccgtag atcgaaatga gctgtgcagg aaggtgctct
      901 gctcgctcac ctatccggag tacgccgacg cgtgggagac ggctgtggag gacgagtcac
      961 tcccgacggc gacgcgactc gcgctcctgt cactggatcc acgcaacatc acgctcgagc
     1021 cggaatatta cgccgagtgc gatggaacgg cgttcgcgct caccaaacca ctgctctggc
     1081 tgtggtattc cttcgatcgc actcccctgg gcggccagaa cgtcgacctc ggcatcaggc
     1141 tgcgacgaat tctggcacag cgcatttttc ggaagtgcgg cgagaacttc aaggcatttc
     1201 agaacgtcga agtttcgttt ggatacaatc tcgaagtcgg cgacaatgtc gtcgttcatc
     1261 gcaacgtgtt gctggatgat cgcggtggta tcgtgctggg cgaccgcgta tcgatcagcg
     1321 atttcgcgaa catctacagt cacacgcaca gtatcgtcga tcagcgcgat gtcaccgatg
     1381 cggtgacgcg gatagacaac gacgttcgca tcacctatca cgcgaccgtc cttgctggcg
     1441 ttcatgtcgg cgagaacggg atggtcggtg cgggagcgat cgccaccaag gatgttcggc
     1501 cgtatcacgt gcacgtcgga attcccgcca agagcattcg cgtcaagccg aacgctccgt
     1561 ccgacgtttt tcatctcacg acaatcaagc cgccaaaaca atgaagatgg atgctgaccg
     1621 gtttctgaaa ggtcagactt ttgaagagtt tgtaacgaca gcgacaaaat accaggagtt
     1681 gtggaacctc ggtgcaaagc gcgcgactgt ccccgccgac gtgatagaga gattcggtac
     1741 gctgcggacg ccggtgcgtc tcatcgcgct caacgaggac tggtgcctgg atgcggttgg
     1801 ggtagtgccc tacgtatcga agctcgccca ggagaatcca cttgtcgagt tccgaagctt
     1861 cggtcgagac gcgaatccgg atctgatgga tgcgcacctc accggcacgt cgagatcgat
     1921 accggttgtg atcgcgtacg atgccgactg gagcgagctg ggctggtggg gacctcgtcc
     1981 caccgagctt cagaagtggg tcaagaccga aggcgatctg ttgcccaagc cggagcgcta
     2041 ccactacatg cgccagtggt acgcgcgcga tcacggagcg acgccgctgc gtgagatcac
     2101 cgacatggtg atgaatgcgc tggacgcacg cgccgccgca actggctgat atcgaagcgt
     2161 gacgtagaag gatgacgtcg ggcgcggccg gattccgccg cacccgctcc gttcggcgta
     2221 ggttgttggc cggaggctct cgatggaacg cgcggcgcga tcgaccgacg aatggattct
     2281 accagtattg cgtgagctgc tgacgccagc tcagcttgca atgatcgcga aggacacgac
     2341 gacgagcaag tggtgcgtcg ctgtatccag tggcttcact actgacgacg cgattctacg
     2401 cgcgatagcg cggcggacac gaatgcgtgt cgccggtgcg ctcacgtcgt caccgcaggc
     2461 ggtggctcgc gttccggagc ggcttgcgag gcgctactcc atcctgccgc tgtcagtatc
     2521 tgcaagcacc atagacgtcg caaccgccaa cccatatgac cttcactgcg agcaggcgat
     2581 cgcgtttgcg gccggcagac gagtacggat gtcgctcgca cttccggcac ggataaccga
     2641 gcggctggag gaagtgtacc gaccagcgtc ggtggtcgag cggctactcg cttctgtggg
     2701 acctgtctcc gtgcatcagg tcgagcccga ggctgattcc gcgaccgcga cacaactcgc
     2761 tgacggagcc cgcgagagac cgatcatcaa gctggtcgac cacatcgtcg cggagggtat
     2821 tgcggcgagg gcgagcgaca ttcatctgga gtctgaagaa gacgcgatat cggttcgcta
     2881 ccgagtggat ggcgtgctac gtaccgcaat gacgctgccg cgcgcaatcg ggctgccgct
     2941 cgtgtcacgc gtcaagataa tgtcgcgcct cgacatcgcc gaccggctgc gcccacaggg
     3001 tggacgcgct ctggtcatgg tggacggtga gcgggtcgac cttcgcgtat cgacgcttcc
     3061 cgctgcgcac ggtgagaaag tcgtgatccg cattctcgat gcgcgcggcg gcgttcgctc
     3121 cctcgatgca ctcggcttcg atgataccga cgaggcgaga ttgacgaggc tgctcgagac
     3181 tcgcgaaggg ctcattcttg ttacggggcc gaccggctcc ggcaaaacca ccacactgta
     3241 ctctgcgctg cactcgctgg tcacacgcgg actgaacgtg attacagtcg aggatccggt
     3301 cgagtatcgg attcccggca tcgttcagtc tcaggtgaat gaaaaggctg gtctcacgtt
     3361 cgccgcggcg cttcgatcga tcctgcgaca ggatccggat gtgattctgg ttggcgagat
     3421 tcgcgacgcg gaaactgcgg caatagcaat tcaggccgcg cttacggggc acctcgtctt
     3481 cgcgaccctt cacaccatcg atgcggcgag ctccatcacc cggctcggcg acctgggcgt
     3541 cgacccggca aagaccggga cggcgctcaa gggagtggtg gcgcagcgtc tgttgcgccg
     3601 cacgtgcccg gcctgcgccc gcgacagcga cgaaccgatt ccgccctcgc tctgggacgc
     3661 catcccgaac ggcgcacggc tgaaggccgg cgccgggtgc gacgtctgct cgggaaccgg
     3721 gttcaggggt cgcatggccg ccgtcgaatt gctgacgatg acaccggccc tcacgcgcct
     3781 cgtggtgacc ggggcgccgg caccgatgat cacggcagcc gctcgcgccg agggaatgcg
     3841 ctcgctctgg accagcggcg tagcgcggat attgagtggc gagacgactg cggctgaagt
     3901 gtcacgcgtg cttgattcgg aggcgaaccg cgccggcgac ggcgatcaga ccaatggcga
     3961 gcagatcgat gaatggccgt tgcgggacgc cggttctccg gcagagtcgc catattccaa
     4021 gc
//
LOCUS       DATIMD010000031         6356 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3764129, whole genome shotgun sequence.
ACCESSION   DATIMD010000031 DATIMD010000000
VERSION     DATIMD010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6356
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3764129"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..584
                     /locus_tag="VLI40_00720"
     CDS             96..584
                     /locus_tag="VLI40_00720"
                     /inference="COORDINATES: protein motif:HMM:TIGR00040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YfcE family phosphodiesterase"
                     /protein_id="HSU95718.1"
                     /translation="MRVGIIADTHDRVPAIAELVARMIGGGASLLMHAGDHCSPFSLT
                     PVNDANIPMLGVFGRNDGDPEGLAAVAAQGVGTELYESPHSFEVSGKQILIVHDIGEV
                     HQRSLDKHHFVFHGSSHQVEMKSRGDTLILNPGEACGWLYGSCTAALVDLDTREVEII
                     KL"
     gene            592..2139
                     /gene="guaA"
                     /locus_tag="VLI40_00725"
     CDS             592..2139
                     /gene="guaA"
                     /locus_tag="VLI40_00725"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HSU95719.1"
                     /translation="MNPERILILDFGAQYTQLIARRVREARVYCEIHPPTRTLEWVRE
                     WNPSGIIFSGGPNSVYGESAPTADPALLDVAPVLGICYGMQLIAQLSGATVLRAGKRE
                     YGRAEVCVTEPDALFAGFHGGECLEAWMSHGDHVESPPPGFSVTARSGANPVTAFRHD
                     TRPIFGVQFHPEVAHTPRGRELIENFLFRVCGLHPTWTPGSFVEREVERVRALVGDAR
                     VICGLSGGVDSSVAAALVHRAVGDQLTCIFVDTGLLRMHEREQVERTFRAHMGVNLIT
                     VDASAEFLGALAGVEDPEKKRKIIGHTFIDVFEATAAKVGDNVRFLVQGTLYPDVIES
                     FSPTGGASVTIKTHHNVGGLKSDMKFALIEPLRELFKDEVRNVGRELGLPEEMVGRHP
                     FPGPGLAIRVLGDVTPAKLEVLRRADAIYLEEIRSAGLYDTIWQAFAVLLPIRSVGVM
                     GDERTYENVLALRAVTSTDGMTADWYHFPYDVLGRISNRIMNEVDGVNRVAYDVSSKP
                     PATIEWE"
     gene            2166..3188
                     /locus_tag="VLI40_00730"
     CDS             2166..3188
                     /locus_tag="VLI40_00730"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HSU95720.1"
                     /translation="MKKIGFLSFGHWTPSSQSQTRSAADALLQSIDLAVAAESLGADG
                     AYFRVHHFARQLASPFPLLAAVGARTSRIEIGTAVIDMRYENPFYMVEDAGAADLIAG
                     GRLQLGISRGSPEQVVDGWRYFGYSPAEGESDADMGRSHAEKFLDLLRGKGFAQPSPR
                     PMFPNPPGLLRVEPHSEGLRERIWWGAGSNATAVWAAKLGMNLQSSTLTFDETGEPFH
                     VQQAKQIEAFRDAWKVAGHAREPRVSVSRSIFALVNDRDRAYFGRESADADQIGYIDE
                     NTRAIFGRSYAAEPDVLVEQLKRDEGIAAADTLLLTVPNQLGVEYNAHVIEAILTHVA
                     PALGWR"
     gene            complement(3265..3717)
                     /locus_tag="VLI40_00735"
     CDS             complement(3265..3717)
                     /locus_tag="VLI40_00735"
                     /inference="COORDINATES: protein motif:HMM:NF012579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HSU95721.1"
                     /translation="MELREFFSEDAISLDLKADNKDDILRELISLLKLDEKSEGMLFK
                     MLKRRENLGSTGIGRGIAIPHCRSLVVNKLRVAFGRKPSGVDFKAIDEKPVYFFFLIV
                     APPLEVSNQYLPVLGKIAQFSKEPDVPGRLLELTEPSQFMALLKEKGV"
     gene            3833..4888
                     /gene="dusB"
                     /locus_tag="VLI40_00740"
     CDS             3833..4888
                     /gene="dusB"
                     /locus_tag="VLI40_00740"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HSU95722.1"
                     /translation="MTRTFPFPIPAPTPLYLAPMAGVSESPFRRICHRFGADVVVTEF
                     LSAEAIRRENEATLAKLRFGADERPIGVQIFGADPDAMGDAARLVSDVFQPEFIDINF
                     GCPVKKVVKRNGGSGCLKDLGLVESVIRAVAAATTLPVTVKIRSGWSEEMRNPVEIAL
                     RCQDAGATVLTLHPRTRAQMYSGAARWDEIAAVVDALDIPVLGNGDIKSPEDAVEMHR
                     QTGCTGIMIARGSFGQPWIFDQTRDLLEGREKRPAPPVRERLAIALEHAHMADEYELD
                     PRGAAVEFRKHLGWYVKGLAGSAELRKKLYAVHSITEVEAIFDDYLSHPYGARNGEDD
                     LVGRAADTTRDAVAEAA"
     gene            4821..6311
                     /locus_tag="VLI40_00745"
     CDS             4821..6311
                     /locus_tag="VLI40_00745"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HSU95723.1"
                     /translation="MVKTTWSGEPLIQRATQSPRQPSTEPASSVEHTPITDVLADVRE
                     LFGGVHASVWDAHDPAAPRPMEFVSADGQEPQLNARAKGLIAWAANQNAGEISTDGER
                     VAFVATPIPSSTGAHHVLAVAAGDRGVLKLPREQLRTWLPRLARRIATLRSLLDAQAA
                     VSQSERHADLLLLTATQLQDHRTIGDLGASLCTAASHMMGTRRVALVRWNASRPLGEV
                     AYSIRGHPVATGSVVTPDSQVGAACIGDYPVLIEDATDRGRGFIVFGGDEEQHTLGAL
                     AIVPLRGIDGVIGALVMENELPIRITPTDAKNLRLLGVMAAHALETVWEIEEINRRAR
                     TDALTGLANRQQFEERLTRIVMETNRFGGSCTLVVVDIDRFKNVNDTYGHQVGDEVLK
                     RVAAALQAEVRNVDLCARYGGEEMALLLPQTDLAGGCQLAERLRVAVGDRPFVIGGRE
                     IQVTVSLGLATYPEGARDRDELFSAADRALYAAKRAGRNKVVAGGL"
BASE COUNT         1207 a         1860 c         2102 g         1187 t
ORIGIN      
        1 gtcgatggca gtcgatttgc cgtaatcacc gagcgagaat ccgacgctga ccttacgcgc
       61 cgcgagacat tcgcgcctga ctggatcgag gactgatgcg agtcggtatc atcgctgata
      121 cacacgatag ggttcccgcg atcgcggagc tcgttgcgcg catgatcggg ggcggtgcaa
      181 gtctcctcat gcacgccgga gatcactgtt ctccgttttc gctgacaccc gtgaacgacg
      241 ccaacatccc gatgctcggc gtcttcggtc gcaacgacgg ggatcccgaa ggactggcgg
      301 ccgttgctgc acagggagtg gggacggagc tgtacgaatc cccgcacagc ttcgaggtgt
      361 ctggcaagca gatactgatc gtgcacgaca tcggcgaggt gcatcagcgg tcgctggaca
      421 agcaccattt cgtattccac ggcagctcgc atcaggtgga gatgaagagc aggggagata
      481 cgctgattct gaatcccggc gaggcgtgcg gctggctgta cggatcgtgc acggccgctc
      541 tggtcgatct cgatacacgc gaagtggaaa tcatcaaact ttgagagctg gatgaatccg
      601 gaaagaattc tgattcttga ttttggggcg cagtacacgc agctgatcgc gcgacgtgtg
      661 cgcgaggcgc gagtttactg tgagatccat cctcccacgc gaacgctgga gtgggttcgc
      721 gagtggaatc cttccggaat aatcttcagc ggcggcccca attcggtgta tggtgaatcg
      781 gcgccgacag ctgacccggc gctgctcgac gtggcgccgg tacttggaat ctgttacggc
      841 atgcagctca tcgcgcagct ttccggcgcg acggttctgc gggcggggaa gcgcgagtac
      901 ggtcgcgctg aagtatgcgt caccgaaccg gacgcactgt tcgcagggtt ccacggcggc
      961 gagtgtctcg aagcctggat gagccacggc gaccatgtgg aatcaccacc tcctggtttt
     1021 tcagtaactg cgagaagcgg ggccaatcca gtcactgcat tccggcacga tacacgcccg
     1081 atattcggtg tgcagttcca tccggaagtt gcccatacac cgcgcggcag ggagctgatc
     1141 gagaactttc tcttccgcgt ctgcggattg caccccacgt ggacgccagg ctcgttcgtc
     1201 gagcgtgaag tcgagcgtgt tcgcgcgctc gtgggcgacg cgcgcgtgat ctgcggattg
     1261 tcgggcggtg tcgattcgtc ggttgcggca gcgctggtac atcgcgcggt tggagatcag
     1321 cttacgtgca tcttcgtcga taccggcttg ctacggatgc acgagcgcga gcaggtcgag
     1381 cgaacgtttc gggcgcacat gggagtgaat ctcatcaccg tcgatgcgag cgcagagttt
     1441 cttggcgcgc tggcaggcgt cgaggacccg gagaagaaac gcaagatcat cggtcacacg
     1501 ttcatcgacg tattcgaagc gacggccgcg aaagttggtg acaatgtccg cttcctcgtg
     1561 cagggcacgt tgtatccgga tgtgatcgaa tcgttctcgc cgaccggcgg cgcgtcggtg
     1621 acgatcaaga cgcatcacaa cgtcggcgga ctcaagagcg acatgaagtt cgcgctgatc
     1681 gagccgttgc gcgagctgtt caaggacgag gtgcggaatg tcggacgcga gctgggcctg
     1741 ccggaggaga tggtggggcg gcatccattc ccgggaccgg gactcgcgat acgcgtgctg
     1801 ggcgacgtga cgccggcgaa gctcgaagta ttgcggcgcg cggatgcgat ctatctggaa
     1861 gagattcgct cggccggatt gtacgacacg atctggcagg cgttcgcggt gttgctaccg
     1921 atccgcagcg taggcgtaat gggagatgaa cgcacatatg aaaacgtgct cgcgttacgc
     1981 gcggttacca gcacggacgg aatgactgcc gactggtatc actttccata cgacgtgctg
     2041 ggacggatat cgaatcgcat catgaacgag gtggacggcg tcaaccgcgt cgcttatgac
     2101 gtgagctcga agccgccggc gacgatcgaa tgggaatgat ggacgtccac cgttaaccgg
     2161 ctgccatgaa gaagatcgga ttcctgtcgt tcggacactg gacgccgtcg tcgcaatcgc
     2221 aaacgcgatc ggcggccgac gcgctgctgc aatccatcga tcttgctgtc gctgccgagt
     2281 cgctcggcgc ggatggcgca tattttcgcg ttcaccactt tgctcggcag ctcgcgtcgc
     2341 cgttcccgct cctggcggca gtcggtgcgc gcacgagtcg catcgagatc ggcaccgcgg
     2401 tcatcgacat gcggtacgag aatccattct acatggtgga ggatgcaggg gccgccgacc
     2461 tgattgcagg cgggcggttg caacttggaa tcagccgcgg ctcgccggag caggtcgtcg
     2521 atggctggcg ctactttgga tacagccctg ctgaaggaga gagcgacgcc gacatgggcc
     2581 gcagccacgc ggagaaattc ctcgatctgt tgcgtggtaa agggttcgca cagccaagcc
     2641 cgcggccaat gtttccaaat ccgcctggcc ttctgcgcgt cgagccgcat tcggaagggc
     2701 tgcgcgagcg aatctggtgg ggcgcgggat ccaatgcgac cgcggtctgg gcagcgaagc
     2761 tcggtatgaa cctgcaaagc tcgacgctca cgttcgacga gactggagag cctttccatg
     2821 tccagcaggc caagcagatc gaggcctttc gcgacgcatg gaaagtggcc gggcacgcgc
     2881 gcgagccgcg cgtttccgtg agtcgcagca tctttgccct cgtgaacgat cgggatcgtg
     2941 catacttcgg acgcgagagt gcggacgcag accagatcgg ctacatcgat gagaacacgc
     3001 gcgcgatatt tggacggagc tacgctgcgg agccggatgt actcgtcgag caactgaagc
     3061 gtgacgaggg gatcgctgcg gctgacacgc tactgttgac ggtgccgaac cagcttggcg
     3121 tggaatacaa cgcgcatgtc atcgaggcga tcctcactca cgttgcgccg gcgctgggct
     3181 ggcgctgatg gcaccgatcg ggggacgggg ttcgatatcc cgttaagagg gcgggcacgg
     3241 gggcccgccc ctacaggggc cacgttacac gcctttttcc ttcaataacg ccatgaactg
     3301 cgacggctcg gtcaactcca gcagccggcc gggcacatcg ggctccttgc tgaactgggc
     3361 aatcttgcca agtaccggga ggtactggtt ggagacctcc agcggcggcg cgacgatcag
     3421 aaagaagaag tagaccggct tctcatcgat cgccttgaag tctacgccgg aaggcttgcg
     3481 gccaaaggcg actctgagct tgttgacgac cagcgagcgg cagtgcggaa tcgctatccc
     3541 gcggccgatt ccggtcgagc caaggttctc gcggcgcttc aacatcttga acagcattcc
     3601 ttcggacttt tcgtccaact tcaggagcga aatgagctcg cgaaggatgt cgtccttgtt
     3661 gtcggccttg aggtcgagcg aaatcgcatc ttctgagaag aactcgcgta gttccattgc
     3721 gtttgttgcg ggagcgggca gttcggcgtg aaccgtccaa ggtactttcg gcccacaggc
     3781 atgtcaaata cgcgcgttgc ccgccctcgc ggcgaacatt agcttcatca gtatgacccg
     3841 gacatttccg ttccccattc cagcaccgac gccactgtat ctggcgccga tggccggtgt
     3901 gtccgaatct cccttccgcc gcatctgcca ccgcttcggc gccgacgtcg tcgttaccga
     3961 atttctctcg gcggaagcaa tacggcgcga gaatgaggcc actctcgcca aactgcgctt
     4021 tggtgccgat gagcgtccga tcggcgtcca gattttcggc gccgatcccg atgcgatggg
     4081 cgacgccgcg cgactggtgt ccgatgtgtt ccaacccgaa ttcatcgata tcaatttcgg
     4141 atgccccgtg aagaaggtcg tcaagcgaaa tggcggatcg ggctgcctca aggatctcgg
     4201 actggtcgag tcggtgatca gggcagtcgc tgcggccacg acgctgcccg tcacggtcaa
     4261 gatccgtagc ggctggagcg aagagatgcg gaatcccgta gagatcgcgc tgcgctgcca
     4321 ggacgcggga gcaacggtgc tcacgctgca tccgcgcacg cgcgcacaga tgtacagcgg
     4381 cgccgcacga tgggacgaga tcgcggcggt tgtcgatgcg ctcgatattc cagtgctcgg
     4441 caacggcgac atcaaatcgc ccgaggacgc cgtggagatg catcgccaga ccggttgcac
     4501 gggtatcatg atcgcgcgcg gatcgttcgg gcagccgtgg atcttcgacc agacacggga
     4561 cctgctcgag ggacgcgaaa agcgccccgc accaccagtg cgcgagcgtc tggcaatagc
     4621 gctcgagcac gcccacatgg ccgacgaata cgagctggac ccgcgcggcg cggccgttga
     4681 atttcggaag caccttggct ggtacgtgaa aggcttggcc ggatcggcag aactgcgcaa
     4741 gaagttgtac gccgttcact cgatcactga ggtcgaagca atcttcgacg actacctgtc
     4801 ccacccatac ggtgcgcgaa atggtgaaga cgacctggtc gggagagccg ctgatacaac
     4861 gcgcgacgca gtcgccgagg cagcctagta ctgagccggc gtcatcggta gaacacacgc
     4921 cgatcacgga cgtcctcgct gacgttcgcg agctgttcgg cggtgtgcac gcgtcagtgt
     4981 gggacgcaca cgacccggcg gcgccacggc cgatggagtt tgtgagcgcc gatgggcagg
     5041 agcctcagct caacgcgcgg gcgaaagggc tgatcgcgtg ggctgcgaat cagaatgccg
     5101 gcgagatctc gacggacggc gagcgcgttg cgttcgtcgc tactccgatc ccgtcctcaa
     5161 cgggcgcaca tcacgtactg gccgtcgcag cgggagatcg cggcgtactc aagcttccgc
     5221 gggagcagct ccgcacgtgg ctcccccggc tcgcgcgccg gatcgctacg ctacgctccc
     5281 tgctcgatgc gcaggccgcc gtaagccagt cggaacggca cgccgacctg ctgctgctca
     5341 cggcgaccca gctgcaggat catcgaacca ttggagacct cggcgcgtcg ctgtgtaccg
     5401 ccgcatcgca catgatgggc acgcgtcgcg tcgctctggt gcgctggaac gcctcgcgcc
     5461 cgctcggcga agtggcgtac tccattcgcg ggcatcccgt agctacagga tcggtcgtca
     5521 cgccggacag ccaggtcgga gctgcgtgca ttggtgatta tccggttctc atagaggacg
     5581 caaccgaccg cggtcgcggc ttcatcgtct tcggcggcga tgaagagcag cacacgctcg
     5641 gcgctctggc gatagtcccg ctgcgtggaa tagatggagt gatcggcgct cttgtgatgg
     5701 aaaacgagtt gcccatcagg atcacgccga ccgatgccaa gaacctgcgt ctgctgggcg
     5761 tgatggctgc acacgctctg gagacggtct gggagatcga ggagatcaac aggcgcgctc
     5821 gaacggacgc cctgaccggg ctcgccaacc ggcagcagtt cgaggagcgg ctgacccgca
     5881 tcgtgatgga gaccaaccgc ttcggcgggt cgtgcacgct cgtagtggtc gatatcgacc
     5941 gcttcaagaa cgtaaacgac acgtacgggc atcaggtggg tgacgaggta ctcaagcgcg
     6001 tagcggcggc gctgcaggcc gaggtccgca acgtcgatct gtgtgcgcgg tacggcggcg
     6061 aagagatggc gcttctgctg ccccagaccg acctcgcggg cggatgccag ctggccgagc
     6121 gtctgcgcgt cgccgtgggg gacaggccgt tcgtcattgg cgggcgcgag attcaggtga
     6181 ccgtatcgct cggattggct acgtatcccg agggtgcgcg ggaccgggac gaattgtttt
     6241 ctgcggcgga ccgggcgtta tacgcggcaa agagggcggg gcgtaataag gttgttgcgg
     6301 gcgggttata atccgttggg gtaacggttt aacgaccgtc atttaaagtc gtttcg
//
LOCUS       DATIMD010000032         5916 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_876532, whole genome shotgun sequence.
ACCESSION   DATIMD010000032 DATIMD010000000
VERSION     DATIMD010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5916
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_876532"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1220)
                     /locus_tag="VLI40_00750"
     CDS             complement(<1..1220)
                     /locus_tag="VLI40_00750"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSU95724.1"
                     /translation="MSAERLEAVDRVVERGIEAGGYPGAAVIVGRKGKAVLQRGFGRL
                     SWDESSPDVSPTSTIYDLASLTKVIGTTTAVMVLYDQGRISLDAPVSRYLPEFTGGEK
                     DLVTIRQLLTHRSGLPAGRDIFKLTHDPVEARKLVLSTPLIAHPGQYYEYSDLGADVL
                     GMVVEAVSQQPLDEFLADYVFHPLGMYQTGFRPADSLDARIAPTGTSGGGRRSRGEVN
                     DENAYALGGVAGHAGLFSTAADLSVFAQMMLNGGVYNGVRILADSTVQLFTTRAAGHR
                     ALGWDTPTGSFGSGNYLSEHSFGHTGFTGTSLWIDPDRDMFVILLTNRVYASRSPHPV
                     RVIADVRSDLSDAASLSVTDMASGELVMPASFRADREVGWHERVRAKRGGRARHAKSL
                     SSIHGSRTRSAAKH"
     gene            1464..2048
                     /locus_tag="VLI40_00755"
     CDS             1464..2048
                     /locus_tag="VLI40_00755"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSU95725.1"
                     /translation="MTTHQTIVQRAVEGDERALRQLWMENAPHIDAVVLRLCGDRDLA
                     ADVAQEVWIQIFRALPSYRGDSQFGTWAHRIAVNRTLNALRKVRRIAKVEIDVEDDTA
                     TAPDNPESETERGIVAESIDQAVRQLSPGARTVFLLHDVEGYTHEEIARELGITTGGS
                     KSQLFKARAKLRRLLAHLAEGFSAGVGQEHGTPI"
     gene            2032..2709
                     /locus_tag="VLI40_00760"
     CDS             2032..2709
                     /locus_tag="VLI40_00760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95726.1"
                     /translation="MALPSKELSEKALDALITREQTRVVAPLTEWRTLSMSLRQEGLI
                     HDDSATRKSAPREYVAEPVTPGSGWFRSTARWTMRLAASAALVGVGVVAGRGMTFGQD
                     FITQMQLAISDSTGSHGVRVGGKPFSSQADARRTLLRAQTDYQRAAAFLAATDTGPRI
                     TGEPDLYRDRLAGLDEMTAASLAALKDAPQDPLLNQYYLSAAAAREATLQQLGNALPP
                     GAKMASF"
     gene            2710..3501
                     /locus_tag="VLI40_00765"
     CDS             2710..3501
                     /locus_tag="VLI40_00765"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HSU95727.1"
                     /translation="MRLVIVATAVAMSAGMTVSTVACAQNASRKSPQKNAAPSGWVGL
                     SVIQKGSGDEDSAVKIGYPVVASVDPGSPAQAAGLVAGDTILAYNDVDASSDPVAVRP
                     FLVAGHELVVKVRRNGVRRLTLTVAKRSARNAYSEGVSVSTTSGAALPLMYGLPSGPI
                     AIAAPVASGREAAPFAGAYLARMNAGLANALDVRNSGVLVVDIADGSDAARAGLESGD
                     VITRADSISVESPLGIMTALRLASDHSVTLDVIRHGKIRKITVRW"
     gene            complement(3556..4482)
                     /locus_tag="VLI40_00770"
     CDS             complement(3556..4482)
                     /locus_tag="VLI40_00770"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSU95728.1"
                     /translation="MPDSAYSDTYDVAIVGGGPAGLSAGLWLGRYLHRVIVIDAGDPR
                     NWETRGIHGYLGSEGITPGELRGRGRDECRPVGVTLLDAMVSRVDRVDDDLFGVALES
                     GGTLTAARILLAIGVHDVWPDVPGLDRCYGETAHVCPDCDGYEALNKKTVVIASGRKA
                     AGLALALTTWTREIVICTNGEPANMTAEILKKLDALNIPIIEAPIERVRSYEGEARAI
                     DLSGGMSLDCDQIFFSIGQEPSDDLGTQLGCKRDEIGRVVTDLHFHTSVRNVYAAGDI
                     IHGPQLAIAAAGIGAVAALSIHHSLLPEGRKL"
     gene            4645..>5916
                     /gene="nhaA"
                     /locus_tag="VLI40_00775"
     CDS             4645..>5916
                     /gene="nhaA"
                     /locus_tag="VLI40_00775"
                     /inference="COORDINATES: protein motif:HMM:NF018648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HSU95729.1"
                     /translation="MKRPLIDHVTAPLSRMMQAGPAAGLVLLVCAAIALVWANSPWAH
                     GYHALWETEISIGVAATHATLTLHEVVNDGLMAVFFFLVGLEIKREILVGELATMRQA
                     ALPVAAALGGMIVPALLFVAFNASTHGTRGWGIPMATDIAFALGVLALLGDRIPSSLR
                     VFLSALAIADDLGAVLVIALFYTATISWSALVAAAALLLLSIVANAVGVRSTWAYALI
                     GLALWVAVLLSGVHATVAGVLLAFTIPSRTRIDESAFLAGARDALRDFHDAHTPERTV
                     LSSRSHQVALEQLNTLADHAQAPLVRLEHGLSATVNFGIMPVFALANAGIPLSGSSHL
                     ITSPVALGVLAGLFLGKPIGISLATWISVRSGIASIPADVTRRMLFGVALLGGIGFTM
                     SLFIAGLAFGGSEELLTAAKLGTFTASLLAGF"
BASE COUNT         1094 a         1780 c         1903 g         1139 t
ORIGIN      
        1 tcgtgttttg cagcggatct ggtgcggctt ccatgtattg aagataacga ctttgcgtgg
       61 cgagcccgtc cgccgcgctt ggctcttacg cgctcgtgcc agccgacctc gcgatcggcg
      121 cggaacgatg caggcatcac cagctcgccg gatgccatgt cggtgaccga cagcgatgca
      181 gcgtcgctca gatccgagcg gacgtcggca atgacacgca ccggatgcgg cgagcgcgat
      241 gcgtacacgc gattggtgag cagaatgacg aacatgtcgc ggtccggatc gatccagagc
      301 gacgtacccg tgaagccggt atgtccgaac gaatgttcgg acaggtaatt ccccgatccg
      361 aacgagccgg ttggggtgtc ccatcccagc gcgcgatgac cggctgcgcg ggtggtgaac
      421 agttggaccg tggagtcggc gaggatccgg actccgttgt aaacgccgcc attcagcatc
      481 atctgcgcaa acacggacag atccgccgcg gtcgagaaca ggcctgcatg tcccgctaca
      541 ccgccgagtg cgtaggcgtt ttcgtcgttg acctcacccc gtgatctgcg gccgccgccg
      601 gaggtgccgg tcggggcgat acgcgcatcg agcgagtccg ccggccggaa tcccgtctgg
      661 tacatgccga gcgggtggaa gacgtaatcg gccaggaatt cgtccagcgg ctgttgcgat
      721 accgcttcga cgaccatgcc aagcacatcg gcgccgaggt cggagtactc gtagtactgt
      781 cccggatgcg cgatgagcgg cgtggagaga accagcttcc tcgcttcgac cggatcgtgg
      841 gtgagcttga agatgtcgcg tccggcgggc agcccggacc gatgggtcaa taattgtctt
      901 attgttacta aatccttctc gccccccgta aattccggga gatatcgcga gacgggggcg
      961 tcgagcgaga ttcggccctg gtcgtacaga accattaccg ccgtggtggt tccgatcacc
     1021 ttggtgagtg aggccagatc gtatatggta gaagtcgggc tgacgtctgg actagattcg
     1081 tcccaggaga gtcggccgaa gccacgctgg agaaccgcct tgccttttcg cccgacgata
     1141 acggccgcgc cggggtatcc accggcttcg atgccgcgtt cgactacgcg atcgacggcc
     1201 tcgagtcgtt cggcggacat gccgaccgag gatggggagg ctacgggcag gccgccgcta
     1261 ccggccaggt cggcagggat ggcgggagag atggggccgg atcctccggc gagggcaaca
     1321 agaagaagac cgaccagcat cagaacgacc tgaacgaaaa gaacggcgaa agataattag
     1381 acgacgggaa gcccaatttg tcatatttga cgattccggc aacccttgag atacaacctg
     1441 agtcaaatac aagcacacac tggatgacga cgcaccagac aatcgtgcag cgggcggtgg
     1501 agggcgatga aagagccctc cggcagctct ggatggagaa cgccccgcac atagatgccg
     1561 tggtgctgcg actttgcggc gaccgcgatc tggcagccga tgtcgcccag gaagtatgga
     1621 ttcagatttt ccgtgcgctt ccaagctatc gtggtgattc gcagttcgga acatgggcgc
     1681 acagaatagc cgtaaatcgc acgctcaatg cattgcgcaa ggtgcggcgt atcgcaaaag
     1741 tggagataga tgtcgaggat gataccgcaa cagctccgga caatccggaa tccgaaaccg
     1801 agaggggaat cgtggccgag tccatagacc aggccgtgcg ccagctctcg ccgggagcca
     1861 gaacggtatt tcttctgcat gacgtggaag ggtatacgca cgaagagatc gctcgcgagc
     1921 tgggcataac gacgggcggc tcgaaatcgc aattgttcaa ggcgcgcgcg aagctacgcc
     1981 ggctcctcgc gcatctggct gaaggattct ccgctggcgt tggtcaagag catggcactc
     2041 ccatctaagg aactgtcgga aaaggcgctc gacgcgctca taacgcgcga gcagacgcgc
     2101 gtcgtggcgc cgttgacgga gtggcgtact ctatccatgt cattgcgaca ggaagggttg
     2161 atccacgacg actccgccac tcgaaaatct gctccccggg agtacgtcgc cgagccggtc
     2221 acaccgggct cgggatggtt tcgcagcacg gcacggtgga cgatgcggct cgcggccagc
     2281 gccgcgctgg tcggcgtcgg tgtcgtcgca ggcaggggaa tgacattcgg gcaggatttc
     2341 attacgcaga tgcagcttgc aatttcggac agcacgggaa gtcacggggt gcgcgtcggc
     2401 ggcaagccgt tctcctcgca ggcggatgcc cgccgaacgc tgctgcgcgc acagacggat
     2461 tatcagcgag cggctgcgtt cctcgccgcg accgacacgg gcccgcgaat cacgggcgag
     2521 ccggacctgt atcgcgatcg tctcgcggga ttggacgaga tgacggctgc gtcactcgcc
     2581 gcactcaagg atgcgccgca ggatccgttg ctcaaccagt actacctgtc ggcggcggcg
     2641 gcccgtgagg cgactctgca gcaacttggc aacgcgctgc cgcccggcgc aaaaatggcg
     2701 agtttctaga tgcgcctcgt cattgtagca actgccgtcg cgatgtccgc gggaatgacg
     2761 gtctcgactg tcgcatgtgc gcagaacgca tcgcgcaaat caccgcagaa aaacgcggca
     2821 ccgtccggct gggtgggact gtcggtgatc cagaagggca gcggcgacga ggattccgca
     2881 gtcaagatcg gatacccggt tgtcgcatcc gtcgacccgg gctcaccagc tcaggctgcc
     2941 ggtctcgttg ccggtgacac gattctcgca tacaacgacg tcgacgcgag ctccgatccg
     3001 gtcgcggtac gtcccttcct ggtcgcggga cacgagctgg tggtcaaggt ccggcgcaac
     3061 ggcgtgcgca ggctcaccct gacggtcgcg aaacgctcgg cgcgcaatgc gtacagcgag
     3121 ggtgtctccg taagcacgac cagcggtgcg gcgctaccgc tcatgtacgg tttgccgtcc
     3181 ggtccgattg cgatcgccgc gcctgtagcc tccggtcgcg aagcggcacc gttcgctggc
     3241 gcgtatctcg cgcgcatgaa cgccgggctc gcaaacgcgc tcgacgtccg caacagcggt
     3301 gttctggtcg tcgacatcgc cgacggatcg gatgcggcca gggcggggct ggaatccggc
     3361 gacgtgatca cgcgcgccga ttccatttcg gtcgagagtc cgctcggaat aatgaccgcg
     3421 ttgcgtctcg catccgatca cagtgtgacg ctcgacgtca ttcggcacgg caagatccgg
     3481 aagatcacag ttcgctggta ggtctcggtc aacgcacgtg gcgatgcccg tcgtgatgcc
     3541 cttcgtcacg tgcaattaca gcttgcgacc ttccggcagt agcgaatgat gaatcgagag
     3601 tgccgccacg gcgccgatgc ccgctgcggc gatggccagc tggggcccgt gaattatgtc
     3661 gcccgcggcg tacacgtttc tgactgacgt gtgaaagtgg agatcggtga cgacgcgtcc
     3721 aatctcatcg cgcttgcatc cgagctgagt gccgaggtcg tcggatggct cctggccgat
     3781 ggagaagaat atctgatcgc aatcgagtga cattccgccg ctgagatcga tcgcgcgcgc
     3841 ctctccttca tacgaacgta cgcgctcgat cggcgcttcg attatcggaa tgttgagtgc
     3901 gtcgagcttc ttcagtattt ccgcggtcat gtttgcgggc tcgccgttgg tgcatatcac
     3961 gatctctcgc gtccacgtcg tgagcgcgag tgcgagtccg gcggccttgc gtccacttgc
     4021 gatgacgacg gttttcttgt tcagagcttc gtagccatcg caatcggggc acacgtgcgc
     4081 ggtctcgccg taacatctgt cgagtcccgg cacgtccggc cacacgtcgt gcacaccgat
     4141 cgcgagcagg attcgtgcgg ctgtcagcgt gccgcctgat tcgagtgcga caccgaacag
     4201 gtcgtcgtcg acgcgatcga cgcgcgaaac catcgcgtcc agcagagtta caccgaccgg
     4261 tctgcactca tcgcgtcctc gtccgcgcaa ctcgcccggc gtgattccct cggagccgag
     4321 gtagccgtgg atgccgcgag tttcccagtt gcgcggatcg cccgcgtcga tgacgatcac
     4381 gcgatgcaga tagcggccga gccagagacc ggcgctgaga ccagcaggac cgccgcctac
     4441 gatggcgacg tcatatgtat cggaatatgc agagtcaggc atggacgcga ttgtcgtgga
     4501 tgtgcaacgg ttgaacgcgc aagtcggatg cccggcgatc atatcaagca cgcgcggttt
     4561 ggtacgcgct tggtacgtgg atggcgtcat cgccaacgcg cgttgcaatt cgcccaatct
     4621 gccccgctgt gctagactgt aggcatgaaa cgaccgctca tcgaccatgt gaccgctcca
     4681 ctcagtcgca tgatgcaggc tgggcctgcc gctgggctgg tgcttctggt atgcgcggct
     4741 attgctctcg tatgggcgaa ctctccgtgg gcgcatggat atcacgcgct atgggagacc
     4801 gagatatcca tcggagtcgc cgcgacgcac gcgaccctca cacttcacga agtcgtgaac
     4861 gatggcctca tggccgtctt tttctttctc gtggggctgg agatcaagcg cgagattctg
     4921 gtgggcgagc tcgcgacgat gcgacaggcc gcgcttcctg tagccgcggc acttggcggc
     4981 atgatcgtcc ctgcgttgct gtttgttgca ttcaacgcat cgacgcacgg cacgcgcggc
     5041 tggggaatcc cgatggccac cgacatcgcc tttgcgctcg gcgtgctcgc gcttctgggc
     5101 gacaggattc catcgtcact tcgagtattc ctttccgcgc tcgcgatcgc cgacgatctt
     5161 ggtgctgtgc tcgtcatcgc gctgttctac actgcaacaa tctcgtggag cgcgcttgtc
     5221 gccgctgcag cgctgttgct gctgtcgata gtcgccaacg cagtcggcgt gcgctcgacg
     5281 tgggcgtacg cgttgatcgg gctggcgctc tgggtagcag tactgttgtc tggcgttcac
     5341 gcgactgtcg cgggggttct tctcgcgttc acgattccat cgcgcacacg tatcgacgag
     5401 agcgcatttc ttgccggtgc gcgtgatgca ctccgggatt tccatgatgc gcacacgccg
     5461 gaacggactg tgttatcgag ccgctcacat caggttgcac tcgaacagct caatacactg
     5521 gccgaccatg cgcaggcgcc gctcgtccgg ttggaacacg ggttgagcgc gacggtcaac
     5581 ttcggaatca tgccggtatt cgcgctcgcg aacgccggaa taccactgag cggtagcagt
     5641 caccttatca cgagcccggt cgcacttggc gtgctcgccg gattgtttct gggcaaaccg
     5701 atcggtatct cgctcgcgac atggatctcc gtacgcagtg ggatcgcgtc gattcccgca
     5761 gacgtgacgc gtcgcatgtt gttcggcgtc gcactactcg gcggcatcgg attcacgatg
     5821 tcgctgttca tcgccggact cgcgttcggt ggatcggaag agctgctgac agcggcaaag
     5881 ctgggaacgt tcaccgcgtc gttgctggcg ggcttt
//
LOCUS       DATIMD010000033         3338 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_299460, whole genome shotgun sequence.
ACCESSION   DATIMD010000033 DATIMD010000000
VERSION     DATIMD010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3338
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299460"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(383..1768)
                     /locus_tag="VLI40_00780"
     CDS             complement(383..1768)
                     /locus_tag="VLI40_00780"
                     /inference="COORDINATES: protein motif:HMM:NF004718.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HSU95730.1"
                     /translation="MTTYTDRTGATHALPDKAAEQTVRADDRAHVFHSWSAQANINPM
                     PIATAAGATFWDYEGKAYLDFASQLVNLNLGHQHPDLVAAIQRQAGRLATIQPSIAND
                     VRGELARLISEKAPGTLNKVFFTNGGTDANEHAVRMARVATGRRKVLAMYRSYHGATS
                     TSIALTGDPRRWANEPSDGSVAHFFGPYLYRSAFHATTELEESQRALEHLENVIVLEG
                     APTIAAIIIETVVGTNGILVPPPGYLAGVRALCDKYGIVYIADEVMAGFGRIGEWFAV
                     NAFDVVPDLITFAKGVNSGYVPLGGVIISDAIAHVFDDRVFPGGLTYSGHPLACAAGI
                     ATFQVFERDNLLHHVRDLGERVVEPVIRKWIDKHPSVGEVRGRGLFWAVELVRSKKTR
                     EPLVPFNARGADAAPMDRLTAACKAAGVWPFTHFNRVQIAPPLIIAEDELRRGLAAID
                     TALDTADKYAE"
     gene            complement(1786..>3338)
                     /locus_tag="VLI40_00785"
     CDS             complement(1786..>3338)
                     /locus_tag="VLI40_00785"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018478 - malonate-semialdehyde
                     dehydrogenase (acetylating) activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HSU95731.1"
                     /translation="ARPVSGQSDASCDTTRSYRVFFMPLIRHFINGAEFGAPLRTGPV
                     YDPATGKHQHDVIYGSAIDVEAAIAAARAAFPAWRATTLTTRSHIFFRLRQLLAERSD
                     ELAALVTSEHGKVLSDAAGEVARGLENVEYASGLINLLKGEFSQQVSHGIDVHNVKEP
                     VGVVGCITPFNFPVMVPLWMITSAIACGNTVVLKPSEKDPSATVLLAKIFMDAGVPAG
                     VLNIVHGDKTAVDAILDSPDVDAISFVGSTPIARAIYQRASASGKRVQALGGAKNHMI
                     VLPDADMDAAADAAVSAAYGSAGERCMAVSVLVAVAGSAQPLVDAIRSRIPKLKIGSG
                     TSAATQMGPLITREHRDKVASYVRNAPAEGATVVVDGSDQRFDTDGFFIGVTLLDNVK
                     TDMKVYTDEIFGPVLAVVRVDTFEEAVKLINENPYGNGAALFTRDGGAARQFEFEVQA
                     GMVGINVPIPTPIGAFSFGGWKDSLFGDAHIYGPESINFYTRSKVITTRWPDPSESQI
                     DLGFPRNY"
BASE COUNT          682 a         1016 c          982 g          658 t
ORIGIN      
        1 tttcgtctcc ggggtcgtac ttggagagtg tatgctgtac gcgaatagcc ggcgcccttc
       61 gcgctccaac tcactgtcga tgatctcgcc tccagctacc cagccattat acccagggat
      121 cggaatcggc ctaacatatc cgcagccggg gattacgacg ctgccccatg gtttgccatt
      181 gtcccgttcc cgcggcaccg gccgccatac gtcttccggc tgcaaagggt catagcactc
      241 ctgcaaaaaa agcagatcca cgccaagcgc cttctggatc gcaggccacc gcggtgtgcc
      301 cgctccctgc ttgagattcc atgtaacgag tcgcatgtga agtacctctc ggagagggag
      361 ccaacccagg cgcgaattcc ggctattcgg cgtatttatc cgcagtgtcc agtgcggtat
      421 cgatcgctgc gagcccgcgg cgcagctcat cttccgcaat gattaacgga ggcgcaatct
      481 gcacgcgatt gaaatgcgtg aacggccaga cgccagcggc cttgcacgct gctgtcagcc
      541 gatccatcgg cgccgcatcc gcgcccctgg cgttgaacgg cacgagcggc tcgcgtgttt
      601 tcttcgaccg cacgagctca accgcccaga acaacccgcg accacgaacc tcgccaacgg
      661 acggatgctt gtcgatccac ttgcggatta cgggctcgac gacgcgctcg ccgagatcgc
      721 gcacatggtg caggaggtta tcccgctcaa atacctggaa cgtcgcgata ccagcagcac
      781 acgctagcgg atgcccggaa taggtgaggc cgccaggaaa gacacggtca tcgaagacgt
      841 gagcgatcgc atccgatata atgacaccgc caagaggcac atagcccgaa ttgacgccct
      901 ttgcgaacgt aatcaggtcg gggaccacgt cgaaggcgtt gactgcaaac cattcaccaa
      961 tccgtccgaa gccggccatg acctcatcgg cgatataaac aatgccatac ttgtcgcaca
     1021 gcgcgcggac gccggcaagg tagcccggag gcggtaccag aatgccattg gtgccaacga
     1081 ctgtctcgat gataatcgca gcaatcgtgg gggcaccctc cagcacaatc acgttctcga
     1141 ggtgctcgag cgcacgttga gactcctcga gctcagtggt ggcgtgaaac gctgagcgat
     1201 acagatacgg accgaagaag tgcgcgaccg atccgtcact cggttcgttc gcccagcgtc
     1261 gaggatcacc agtgagcgcg atcgacgtcg acgtcgcgcc gtggtacgaa cggtacatcg
     1321 ccagcacctt gcggcggccg gtcgcaacgc gggccattcg gaccgcgtgt tcgttagcat
     1381 cggtgccgcc gttggtgaag aacaccttgt tgagcgtacc gggcgctttc tcggagatga
     1441 gcctggcgag ttccccgcgc acatcgtttg cgatcgatgg ctggatggtc gcgagtcgac
     1501 cggcctgacg ctgtatcgcg gcaaccaggt ccgggtgttg atgcccgagg ttcagattca
     1561 ccaactgtga cgcgaagtcc agatacgctt ttccttcgta atcccagaat gtggcacccg
     1621 ccgccgttgc aatcggcatc ggattgatgt ttgcctgcgc gctccacgaa tgaaagacgt
     1681 gtgcacgatc gtccgcgcga accgtttgtt cagcggcttt gtccggcagt gcgtgtgtgg
     1741 cgccagttcg gtctgtatac gtcgtcatgt cagttccggt gatcctcaat agttgcgcgg
     1801 gaaaccgagg tcgatctgcg attcagacgg gtctggccag cgcgttgtga tcaccttgct
     1861 gcgcgtgtag aagttgatcg actccgggcc atatatgtgc gcatcgccga atagggagtc
     1921 cttccagccg ccgaacgaga acgcgccgat aggtgtcggg atcggtacgt tgatcccgac
     1981 catccctgcc tggacttcaa actcgaactg acgggcagca ccgccgtcgc gcgtgaacaa
     2041 tgcggcaccg ttgccgtacg ggttctcatt gatcaacttg acagcttctt cgaacgtgtc
     2101 aacacggacg acggccagaa cgggcccgaa aatctcgtcg gtgtaaacct tcatgtcagt
     2161 cttgacgttg tcgagcagcg tcactccaat gaaaaaaccg tcggtgtcga aacgctggtc
     2221 gctaccatcg acgacgacag tcgcaccctc ggcgggcgcg ttcctgacgt aagaggcgac
     2281 cttgtcgcga tgttcacgcg ttatgagggg acccatctgc gtggcggcgc tggtacccga
     2341 gccaatcttg agcttgggaa tacggctacg gatggcgtcg acgagcggtt gtgcgctacc
     2401 ggcgaccgca accagaacgc tcactgccat gcaacgctcc cccgcggaac cgtatgccgc
     2461 cgagacggcg gcatcagcag ctgcgtccat atccgcgtcc ggcaggacaa tcatgtggtt
     2521 ctttgcaccg ccaagcgcct gtacgcgttt gccactggca cttgcgcgct ggtagatcgc
     2581 gcgcgctatc ggcgtcgagc cgacgaagct gatcgcatcg acatcaggag aatccagaat
     2641 tgcatcgacg gcagtcttgt cgccgtgtac gatgttcaat acgcccgctg gtacgccggc
     2701 atccatgaag atcttcgcca gtaacacagt cgcggacgga tccttctcgc tcggcttcag
     2761 tacgacggta ttaccgcaag cgatcgcgct ggtgatcatc cacagcggga ccatgacggg
     2821 gaaattgaac ggggtaatgc agccaacgac accgaccggt tctttcacgt tgtgtacgtc
     2881 gatcccgtgc gatacctgct gactgaactc gcctttgagc aggttgatga ggccggatgc
     2941 gtattcgaca ttttcaagtc ctctggcgac ttcgccagca gcatctgaca gcaccttgcc
     3001 atgctcgctg gtcacaagcg cggccaactc gtcggaacgc tctgcgagca actggcgcaa
     3061 tcgaaagaaa atatgcgatc gcgttgtcag ggtcgttgcg cgccacgccg gaaacgccgc
     3121 gcgcgctgca gcgatggccg cttcaacgtc gatggcggat ccgtagatga catcgtgttg
     3181 atgctttccc gtcgctggat cgtagactgg accagtgcgg agaggagcgc cgaactccgc
     3241 accgttgatg aagtgccgaa taagaggcat gaagaatacc ctgtacgaac gggtggtgtc
     3301 gcatgacgca tccgattgtc ccgataccgg acgtgcgt
//
LOCUS       DATIMD010000034         6516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3765111, whole genome shotgun sequence.
ACCESSION   DATIMD010000034 DATIMD010000000
VERSION     DATIMD010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6516
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3765111"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1221)
                     /locus_tag="VLI40_00790"
     CDS             complement(<1..1221)
                     /locus_tag="VLI40_00790"
                     /inference="COORDINATES: protein motif:HMM:NF024900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HSU95732.1"
                     /translation="MATSAEPTTAVAQPKMVNLTIEGRPVSVPEGTSILEAGKRAGIL
                     IPHYCYHPGLSIAGNCRMCLVDVEKAPKLAPACATAAAEGQVVHIYTEKALEARKGVL
                     EMLLINHPLDCPICDKSGECELQDFTYQEGPAESRLRDPKRFNPIEDFGGDVLYTTNR
                     CILCTRCVRFMDELAQDTVLNVTERGDRALIGKFEGKDLTHAWAGNVIDLCPVGALLS
                     KDSLNKARSWELDHAPSICPGCSQGCNISIDTRDNTVIRLRPRPNESVNKYFMCDTGR
                     LDYRWINRQDRIEVPLMRRGESLAAADWDVAIPAAAALLDGRRVFVAASPNLSNETLY
                     LLSQLIRANGGAGAFTVPTGPEAPLPGIPDLSLRADRAANGDGAMLLGFKRTGSPLDG
                     IAAGDVLIVADVDAA"
     gene            complement(1222..2535)
                     /gene="nuoF"
                     /locus_tag="VLI40_00795"
     CDS             complement(1222..2535)
                     /gene="nuoF"
                     /locus_tag="VLI40_00795"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HSU95733.1"
                     /translation="MGYPHPSHAGETPVLSQYFGDQDIIGLDGWRKRGGYNGLEKALS
                     MSPGEIVDVVKASGLRGRGGAGFPTGVKWSFMKPGDGKPHYLCCNADESEPGTFKDRE
                     IMRWTPHALVEGCAIGAYAIGAETAYIYIRGEFTEPLIRMRQAVREAYDAGIIGKNAM
                     GSGKRIDIVIHKGAGAYICGEETAMMNSIEGRRGNPRIKPPFPAVSGVFAQPTTINNV
                     ETLAAVPHIIVRGADWYKGMSLSSPKSTGSKLFSVCGNIAKPGNYEVTMGFSFRDFLY
                     DLCGGPLPGRSFKAVVPGGISVPIQTMEEAEATKMDYEGFIEQGSMLGSGGVIVFDDQ
                     QNMVKQIARAARFFAHESCAQCTQCREGTAWTTKIMERIRDGEGTHEDLDTLFSIADN
                     MTGKTICVLSDSCAVPVVSGINKFRSEFEALIKKPKFHAVTAAVA"
     gene            complement(2535..3035)
                     /gene="nuoE"
                     /locus_tag="VLI40_00800"
     CDS             complement(2535..3035)
                     /gene="nuoE"
                     /locus_tag="VLI40_00800"
                     /inference="COORDINATES: protein motif:HMM:TIGR01958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HSU95734.1"
                     /translation="MTHDHDAPYQAVFVGERRKELDALFPLYPTKMACILPALWMVQE
                     DRGWISDEAMAEVAEVLELTPAYVKGVVTFYTMYNTHPVGKYLIQVCTTTPCNICGAE
                     DVVGAFLEHTGCGDLGITSADGRFTVIEVECLGACGFATPVMINEGFVESVTAARVPE
                     IVAGLK"
     gene            complement(3041..4354)
                     /gene="nuoD"
                     /locus_tag="VLI40_00805"
     CDS             complement(3041..4354)
                     /gene="nuoD"
                     /locus_tag="VLI40_00805"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018052518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HSU95735.1"
                     /translation="MATKTRTIEVELSTSGLDRAGKPQRVPLVTNDGGVSVGIPEPLA
                     LEPALDGEHMLINLGPQHPATHGVLRLVLELDGETVVRCIPHIGYLHCGFEKTGEYRQ
                     YNQIIPWTDREDYLNAPGNNVAMALGAERMFGIEITERCKVLRVIACELSRIMSHLVW
                     LGTTSIDIGAYTPFLWSFHQRELIYQLLEAWTGARLTTSLTRIGGLMADIPDGWTENA
                     RSFLGGFNKVLDDVETLLTKNGIWVGRTVGLGVMSPEEAINWGLSGSMVRASGVSYDV
                     RKDFPYLDYETYDFEVPVGVNGDVYDRYLVRMEEMRQSVRIVQQALDRLPDGPINVDD
                     PRVILPSKTKATSGMESMIHHFKQVMEGPRPPVGEAYVAVESPRGEKGYYMVSDGTAK
                     PVRWRIRPPSFINLSAIPKMVEGHLLSDVIAINASIDVVLGEIDR"
     gene            complement(4359..5078)
                     /locus_tag="VLI40_00810"
     CDS             complement(4359..5078)
                     /locus_tag="VLI40_00810"
                     /inference="COORDINATES: protein motif:HMM:NF012549.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HSU95736.1"
                     /translation="MTGPTELTESFEIVSVGSALTNAAPPATPKNVPHRGGEANPSAD
                     ALKQQFGDAILRVSVGWGETTVFVARERAGEIIRWLHDDESQQYDYLADVTAVEYRET
                     EVPMEVVWHLRSLPYRRFLRIKTELPKNAPLEVDSVWGIYRCADWLERECYDMFGIKF
                     IGHPDLRRLLMWEQYKEGYPLRKDFPLRGRFSRSEQLRQALAANPESRYSMEELTVAE
                     AFSEIPEDMRRRLASGERTGE"
     gene            complement(5075..5707)
                     /gene="nuoB"
                     /locus_tag="VLI40_00815"
     CDS             complement(5075..5707)
                     /gene="nuoB"
                     /locus_tag="VLI40_00815"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HSU95737.1"
                     /translation="MGLTARPDSALRRVEYDPQSQDGWVTTRLDFLVNWGRANSLWPM
                     PFGTACCAIEFMATAAADFDLARFGMERMSFSPRQSDVLICAGRVPFKLAPIIRRIWQ
                     QMAQPKWSIAMGACASTGNMFDNYAVVQGIDTIIPVDVYVPGCPPRPEGLLYGIQMLQ
                     KKVMSERMSDRALRDEMEPDPTTQLYIPPPAIDEISEPFGNSINQTRSTP"
     gene            complement(5698..6102)
                     /locus_tag="VLI40_00820"
     CDS             complement(5698..6102)
                     /locus_tag="VLI40_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HSU95738.1"
                     /translation="MAREYFPVLLLLGFVVMNAVLIIGVSALTIRKRPTPVKRAAYES
                     GIPAIGDARERFSVAFYMIAMLFIIFDIETVFMIPWAAAFRQLSCSAELVGGFCPAGS
                     TSFFGLGEMLIFMAILVVGFVYVWKKGALRWD"
     gene            6227..>6516
                     /locus_tag="VLI40_00825"
     CDS             6227..>6516
                     /locus_tag="VLI40_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HSU95739.1"
                     /translation="MSIQSDRWIIEQAAKGMIEPFENSQVRSGVISYGVSSYGYDMRV
                     SNQFKIFTNVLNSIVDPKQFDPKSFVEFEGDVCIVPANSFALACSVEYFRIPR"
BASE COUNT         1256 a         1991 c         1985 g         1284 t
ORIGIN      
        1 cgcagcgtcc acgtcagcga cgatcaatac gtcgccggca gcgatcccgt ccagcggcga
       61 accggtgcgc ttgaatccga gcagcatcgc tccgtcacca ttcgccgcgc gatctgcgcg
      121 gagcgagaga tcgggaattc ccggcagcgg cgcctccggt cccgtgggga ccgtgaatgc
      181 tccggcgccg ccattcgcgc gaatgagctg cgacagcaga tacagagttt cgttcgagag
      241 attgggcgat gcggcgacga agacgcgacg tccgtccagc agagccgcag ccgccggaat
      301 ggcgacgtcc caatccgccg ccgcgagcga ctcgccgcgg cgcatgagcg gaacctcgat
      361 gcgatcctgc cggttgatcc agcggtagtc gagccggccg gtgtcgcaca tgaagtactt
      421 gttgacgctc tcgttcgggc gtggacgcaa ccggatgacc gtgttgtcgc gcgtgtcgat
      481 cgagatgttg cagccctggc tgcaaccggg acagatggac ggcgcgtgat cgagctccca
      541 ggagcgtgcc ttgttgagcg aatccttgga gagcagcgca ccaaccgggc agagatcgat
      601 cacgttgcca gcccacgcgt gggtcaggtc cttgccctcg aactttccga tcagcgcgcg
      661 atcaccacgc tccgtcacgt tcagaacggt gtcctgcgcg agctcgtcca tgaagcggac
      721 gcagcgcgtg cagagaatgc agcgattggt ggtgtacaga acgtcaccac cgaagtcctc
      781 gataggattg aaccgctttg gatcacgcag ccgcgactcc gcgggtcctt cctgatacgt
      841 gaagtcctgc agctcgcact cgccggactt gtcgcagatc ggacagtcga gcggatgatt
      901 gatgagcagc atctcgagca cgcccttgcg tgcctcgagc gccttctccg tatagatgtg
      961 caccacctga ccttcggccg ccgcggtcgc gcaggcaggc gcgagcttgg gcgccttctc
     1021 gacatccacc aggcacatgc ggcaattgcc ggcgatcgag agcccgggat ggtagcagta
     1081 gtgcgggatg agaatgccag cgcgcttgcc ggcttcgaga atcgacgttc cttcgggaac
     1141 cgagaccgga cgcccctcta tggtgagatt caccatcttg ggctgcgcta ccgccgtggt
     1201 cggctcagca ctcgtagcca tttatgccac cgccgcggta acagcgtgga acttcggctt
     1261 cttgatcaag gcttcaaact ccgaacggaa cttgttgatg ccggacacaa cgggaacggc
     1321 gcacgaatca ctgagcacgc agatcgtctt gccagtcatg ttgtcggcga tactgaagag
     1381 cgtgtcgaga tcttcgtgcg ttccttcacc gtctcgaatg cgctccatga tcttggtggt
     1441 ccaggcggtg ccttcgcggc attgggtgca ctgcgcgcag ctctcgtgcg caaagaaccg
     1501 cgcggcgcgc gcgatctgct tcaccatgtt ctgctgatcg tcaaagacga tgacgccgcc
     1561 ggagccgagc atcgagccct gctcgatgaa gccctcgtaa tccatcttcg tggcttcggc
     1621 ttcttccatc gtctggatcg gcaccgagat gccacccggt acgacagcct tgaaactgcg
     1681 tcccgggagc ggaccaccgc acagatcgta caggaagtct ctgaacgaaa agcccatcgt
     1741 gacttcgtag ttgccgggct tcgcgatgtt gccgcaaacc gagaacagct tggacccggt
     1801 gctcttggga ctggagagcg acatgccctt gtaccagtcc gcaccacgca cgatgatgtg
     1861 cggaaccgca gcgagcgtct cgacgttgtt gatcgtcgtg ggctgcgcga agacgccgga
     1921 cactgccgga aacggaggct tgattcgcgg attgccgcgc cggccttcga tggaattcat
     1981 catcgcggtc tcttcgccgc agatgtacgc gccagcgccc ttgtgaatca ctatgtcgat
     2041 gcgcttgccg cttcccatgg cattcttgcc gatgatgccg gcgtcgtacg cctcgcgaac
     2101 ggcctgtcgc atgcgaatca gcggttccgt gaactctccg cggatgtaga tgtacgcggt
     2161 ttcggcgccg atcgcatacg caccgatcgc gcagccttcc acgagcgcgt gcggtgtcca
     2221 gcgcatgatc tcgcggtcct tgaacgtgcc cggctcggat tcgtcggcgt tgcagcacag
     2281 atagtgcggc ttgccgtcgc ccggcttcat gaaggaccac ttgactccgg tcgggaagcc
     2341 cgcgccgcca cggccgcgca gcccggatgc cttgacgacg tcgacgatct cgccgggcga
     2401 catcgacagc gccttctcaa gtccgttgta accaccgcgc ttgcgccagc cgtcgagccc
     2461 tatgatgtcc tgatcgccga aatactgcga cagtacggga gtctcgccgg cgtgggatgg
     2521 atgcggatat cccattactt gagccctgcc actatctcgg gaacgcgagc ggcagtaacc
     2581 gactcgacga atccctcgtt gatcatcact ggagttgcga agccgcatgc gccgaggcat
     2641 tcgacttcga tcaccgtgaa cctgccgtca gctgacgtga taccaaggtc gccacaaccc
     2701 gtgtgttcga ggaacgcgcc gacgacgtct tcggcaccgc agatgttgca tggcgtcgtg
     2761 gtgcacacct gaatcagata tttgccgacc ggatgcgtgt tgtacatggt gtagaatgtc
     2821 accacaccct tcacgtacgc gggggtgagc tccagcacct cggcgacttc ggccatggcc
     2881 tcgtcgctta tccagccgcg gtcttcctgc accatccaca atgctggaag aatgcaggcc
     2941 atctttgtgg gatagagcgg gaacagcgca tccagctcct tgcgccgctc gccgacgaat
     3001 accgcctgat atggagcgtc gtggtcgtgc gtcacggccg tcatcggtcg atctctccca
     3061 gcactacgtc aatgcttgcg ttgatggcga tgacgtctga cagaagatgg ccttcgacca
     3121 tcttcgggat cgccgaaaga ttgatgaatg acggcggacg aatacgccac cgtaccggct
     3181 tggccgttcc gtcggacacc atgtagtagc ccttctcacc gcgcggactt tcgaccgcga
     3241 cgtaagcttc accgaccggt gggcgggggc cttccatcac ctgcttgaag tgatggatca
     3301 tggattccat tccgctcgtc gccttggtct tggacggcag aattacgcgg ggatcgtcga
     3361 cgttgatcgg tccgtcggga agccggtcga gcgcctgctg cacgatgcgc accgactggc
     3421 gcatctcctc catgcgaacg agatagcgat cgtagacgtc gccattcacg ccgacgggaa
     3481 cttcgaaatc gtaggtctcg tagtcgaggt acggaaagtc cttacgtacg tcgtacgaaa
     3541 caccggacgc gcgcaccatc gacccggaca atccccagtt gatcgcctct tcggggctca
     3601 tgacgccgag cccgactgtg cggccaaccc agattccatt cttcgtgaga agtgtctcga
     3661 cgtcgtccag aaccttgttg aatccgccga ggaaacttct ggcgttttcg gtccagccat
     3721 cgggaatgtc ggccatcaga ccgccgatgc gagtgagcga cgtggtgaga cgcgcgccag
     3781 tccacgcttc gaggagctga tagatgagct cgcgctggtg gaaagaccag aggaacggcg
     3841 tgtatgcgcc aatgtcgatc gacgtggtgc cgagccatac gaggtgcgac atgatgcgcg
     3901 acagctcgca tgcgatcacg cgaagcacct tgcagcgctc ggttatctcg atgccgaaca
     3961 tgcgctcagc gccgagcgcc atcgcaacgt tgttgcctgg agcattgagg taatcctcgc
     4021 gatcggtcca cgggattatc tgattgtact ggcgatattc gccggtcttc tcgaagccgc
     4081 agtgcagata gccgatgtgc gggatgcagc gcacgacagt ctcaccgtcg agctcgagca
     4141 ccagccgcaa cacgccgtgg gtagccggat gctgtggccc gagattgatg agcatgtgct
     4201 caccatcgag cgcaggctcc agcgcgagcg gctccggaat gccaaccgac acaccgccat
     4261 cgttggtgac gagcggaacg cgctggggct tgcccgcgcg atcgaggccg ctggtcgaga
     4321 gttctacttc tatcgttcgt gtcttggtcg ccatgattct actctcccgt cctttcaccc
     4381 gacgcgagcc ggcggcgcat gtcttcggga atttcgctga aggcttcggc gacggtcagc
     4441 tcttccatcg aatagcgcga ctccgggttg gcggcgagtg cctggcgcaa ctgctcggag
     4501 cgactgaagc ggccgcgcag cggaaagtcc ttgcggagcg gataaccctc cttgtactgc
     4561 tcccacatca gcaggcggcg cagatcggga tggcctatga acttgatgcc gaacatgtcg
     4621 tagcactcgc gctcgagcca gtcagcgcag cgatagatcc cccacacgct gtcgacttcg
     4681 agcggtgcgt tcttgggcaa ctcggtcttt atgcgcagga accggcgata tggaagcgag
     4741 cggaggtgcc agacaacttc catgggaact tcggtctccc ggtattcgac agccgtgacg
     4801 tcggcgagat agtcgtactg ctgcgactcg tcgtcgtgca gccatcggat gatctcaccg
     4861 gctcgctcgc gcgcgacgaa gacagttgtc tcgccccagc cgacggagac gcgtagaatc
     4921 gcgtcgccga actgctgctt caacgcgtcg gctgacgggt tcgcttcgcc gccgcgatgt
     4981 ggcacgttct tcggtgtagc gggcggtgcg gcgttcgtaa gtgcactgcc cacggaaacg
     5041 atttcaaacg attcggttag ttcggttggt ccggtcacgg cgttgaacgc gtctgattga
     5101 tcgagttgcc gaacggctcc gaaatctcat cgatcgccgg cggcggaatg tagagctgcg
     5161 ttgttggatc gggctccatc tcgtcgcgaa gcgcgcggtc ggacatgcgc tcgctcatga
     5221 ctttcttctg aagcatctgg atcccgtaca gcaatccttc cggacgcggt gggcaaccgg
     5281 gtacataaac gtcgaccgga atgatcgtgt cgatcccctg caccactgcg tagttgtcga
     5341 acatgttgcc ggtggatgcg caggcaccca tcgctatgga ccacttgggc tgcgccatct
     5401 gctgccagat gcgccggatg atcggcgcaa gcttgaacgg cactcggccg gcgcagatca
     5461 gaacatcgga ctgacgcggc gagaacgaca tgcgctccat gccgaagcgc gcgaggtcga
     5521 agtcggcggc agctgttgcc atgaactcga tcgcgcagca ggcggttccg aacggcatgg
     5581 gccagagcga gttggctcga ccccaattga ccagaaaatc gagccgcgtg gtgacccagc
     5641 cgtcctgtga ctgtgggtcg tactcgacgc gcctgagcgc cgagtccggg cgagcggtca
     5701 atcccatctt agtgctcctt tcttccacac atacacgaag ccgacgacga ggatagccat
     5761 gaatatgagc atctcgccga ggccgaagaa tgacgtcgag cccgcggggc agaagccacc
     5821 gacgagctcc gcgctacatg acagctggcg gaaggcggcc gcccagggaa tcatgaagac
     5881 ggtttcgatg tcgaatatga tgaacaacat cgcgatcatg tagaacgcga cggagaagcg
     5941 ctcgcgcgcg tctccgattg ccggaattcc ggattcgtac gcggcacgct tcaccggagt
     6001 gggccgcttg cgaatcgtaa gggctgaaac tccgatgata aggacggcgt tcatgactac
     6061 gaagccgagc aacagcagga ctggaaagta ttctcgcgcc atgccgaatt gagagcaggc
     6121 ggccgatcta ggccaacccg catgtgaaaa atttcactaa tgcgtcttgg aagattttag
     6181 cgtatgttaa gactcttttc aacggaaacg atttactcgg aattgaatgt ccattcagtc
     6241 tgatcgctgg atcatcgagc aggccgcaaa ggggatgatc gaaccattcg agaacagcca
     6301 ggttcgctcc ggtgtcatct cctacggtgt cagctcctac ggctacgaca tgcgagtgtc
     6361 gaaccagttc aagatcttta ccaacgtgct caactcgatc gtggatccca agcagttcga
     6421 tcccaagtcg ttcgtggagt tcgagggtga tgtctgcatc gtcccggcca actccttcgc
     6481 gctggcgtgc tccgtcgagt acttccgcat cccgcg
//
LOCUS       DATIMD010000035         3938 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2033183, whole genome shotgun sequence.
ACCESSION   DATIMD010000035 DATIMD010000000
VERSION     DATIMD010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3938
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2033183"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1429)
                     /locus_tag="VLI40_00830"
     CDS             complement(<1..1429)
                     /locus_tag="VLI40_00830"
                     /inference="COORDINATES: protein motif:HMM:NF014518.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar cap protein FliD N-terminal
                     domain-containing protein"
                     /protein_id="HSU95740.1"
                     /translation="MSTPVGSFPGLGSSFDYSSLVDSLIQVQSQPGVAMQTRITTAQA
                     QQSAYQTYSGLLSNLEATTSLMRDGTAFQGVNANVSNATAANGQTILSASALSGASPG
                     SYAVQVLQTAQAEKLSGTTFANSTAALGLSGDFVINGKTVTIAATDTLVSVRDKINAV
                     NSGATASGVSAAIVTDASNAQRLVLTSVQTGSQGINLVDGSQGVAQSLGWIDSTTSIK
                     HITSAGAQSDNFASATTSIGSQLGLTAAPGAQTVTIAGQAVSIDLGTDSLTSLAAKFS
                     AVPGIQATVQSTTANGTTQYYLDVRNTTSFVDGGNTLQQLGILTAGTSPVAQQLQSAA
                     MTDGNGTTPATASTLLANLWNGGSASGAQVGDTLTISGTRGDGSAVNVSFTVAAGSTV
                     QDLLNTLNDATTGFGAGTRPATASIDASGHIVVSDGTSGQSSLSLQMVANNQGGGRLD
                     FGAFATTSTGRSRELVAGTDAKFSVD"
     gene            complement(1547..2671)
                     /locus_tag="VLI40_00835"
     CDS             complement(1547..2671)
                     /locus_tag="VLI40_00835"
                     /inference="COORDINATES: protein motif:HMM:NF012874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HSU95741.1"
                     /translation="MFIQNNINSMNALNNLNTNETQLTSSIQKLSSGFRLNRAGDDAA
                     GLSIANSLRNNGVGLQQAQQNASQAGSLLQIADGATSTISSILDRMKQLATESASANV
                     TDTDRQKINAEFTQLYSEIDRTVGSTVYQGSQLLNGSFGVTDAGTGTAKNNVAFSGLS
                     VSGADVNTTYTISKVDGTHLKLSNATSSQTITTAASGTQTLNFDKMGISFTFTGDPTA
                     AISGTGGGLDTATIITANTTSAAFRVGSGATSDSDNLVSVSLGDLRASSATGLNLAGV
                     SVDTLANATTALASITSAVSSVNTVIGSLGAAENRLNYASTNVASLYQNVSAAESVIR
                     DTNMAQEYTNFSKLTILQQAGTAMLAQANSSQQSVLKLFQ"
     gene            complement(2859..3311)
                     /gene="fliW"
                     /locus_tag="VLI40_00840"
     CDS             complement(2859..3311)
                     /gene="fliW"
                     /locus_tag="VLI40_00840"
                     /inference="COORDINATES: protein motif:HMM:NF014660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HSU95742.1"
                     /translation="MTSAALAYSMPSTVTIASDILGTIAVEPGSLLTFPRGLLGFPEC
                     RSFVLLPSERPHVYWLQSADYSSLAFLLVDPFMFFEGYNLDLDPAETHAASPDEVSVL
                     AIVTLPGAPGELPTANLQGPVVINTRLSEGSQVVLAESSYGIRESFKL"
     gene            complement(3308..>3938)
                     /locus_tag="VLI40_00845"
     CDS             complement(3308..>3938)
                     /locus_tag="VLI40_00845"
                     /inference="COORDINATES: protein motif:HMM:NF012903.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HSU95743.1"
                     /translation="DTVTRATAIATQQGTATASASDRLAAKQEVDNLLSSAVAAGNTQ
                     YQGTYLFGGDNTTAAPVTTTPPFYTGTAPSGTHTTQIAAGQLFKSNHNATEMLLNTGT
                     LQSLKDLSTALGNNDQAGIGAALTSLNSSQQGIQSLVGDLGARENQLQVTSSNITALQ
                     QNLTTFKTNLSNVDQEQAITDLVTRQTAYQSAMLATSRVLGMTLTDYLK"
BASE COUNT          689 a         1083 c         1318 g          848 t
ORIGIN      
        1 cgtcgaccga gaactttgcg tcggttccgg ccacgagctc gcgggagcgg ccggttgacg
       61 tggtcgcgaa ggcgccgaaa tcgagcctgc cgccgccctg attgttggcc accatctgca
      121 gcgagagact gctctggccg gacgtaccgt cgctgacgac gatatggccg ctggcgtcta
      181 tcgacgccgt cgccggtcgc gtccctgcac caaaaccggt agtcgcatcg ttgagcgtgt
      241 tgagcaagtc ctgtactgta ctgcctgcag ccacggtgaa cgagacgttc acagccgagc
      301 cgtcaccacg cgtgccggat atggtcagtg tatcgccgac ctgcgcgccc gatgcggagc
      361 cgccgttcca gaggttggca agaagcgtcg atgcagtcgc tggagtggtg ccgttgccat
      421 cggtcatcgc cgcactttgc agctgctgtg ctacgggcga tgtgccggcg gtgaggatgc
      481 ccagctgttg cagtgtattt ccaccgtcga cgaagctggt ggtgttgcgg acgtcgagat
      541 agtactgcgt ggtgccgttc gcagtcgtgc tctgcacggt cgcctggatt cccggcactg
      601 ccgaaaattt cgctgcgagc gaagtgagcg agtccgtgcc gagatcgatc gagacggcct
      661 gaccggcgat cgtgaccgtc tgcgcgcctg gcgcggcggt caatccgagc tgcgatccaa
      721 tgcttgtcgt ggcggacgca aaattgtcgc tctgtgcgcc ggcgctggtg atgtgcttga
      781 tcgaagtggt cgaatcgatc cagcccagtg actgcgcgac tccctgcgag ccgtcgacga
      841 ggttgatgcc ctgggaaccg gtctgcacac tcgtgaggac aagccgctgc gcgttcgacg
      901 catccgtcac aatggccgcg ctgacgccgc tggctgtcgc accggagttg acggcattga
      961 tcttgtcgcg aacggagacc agcgtatcgg tcgcagcgat cgtcacggtc ttgccgttga
     1021 tgacgaagtc acccgaaagg ccgagggccg cggtgctgtt cgcgaaggta gtgccggaaa
     1081 gcttctcagc ctgtgccgtc tggagtacct gaaccgcgta ggatcctggt gatgcaccgc
     1141 tcagcgctga agcagagagg atggtctggc cgtttgctgc agtcgcgttg gagacgttgg
     1201 cgttgacgcc ctggaacgcg gttccatcgc gcatgaggct ggtggtggcc tcgagattcg
     1261 agagcagccc gctgtacgtc tggtatgcgc tctgttgcgc ctgtgcggtc gtgatgcgtg
     1321 tctgcatcgc gacacctggc tgcgactgaa cctggatcag gctgtcgacc agcgagctgt
     1381 agtcgaagct gctacctaga cctgggaagg atcctacagg ggtactcatc gtcatttcct
     1441 ccgtatgcga cgagcccgta ggagcccatt cgggccccta cggtctcgta gccgggtttg
     1501 gggaggcagg agattcctct ccgctgccct cacccggtta gttcatttac tggaagagct
     1561 tcagcacgct ctgctggctc gaattcgcct gagcaagcat cgcggtgccg gcctgctgga
     1621 ggatcgtgag cttgctgaag ttggtgtatt cctgcgccat gttcgtgtcg cgaatgacgg
     1681 actctgcagc cgaaacgttc tggtacagag aagcaacgtt cgtggacgcg tagttgaggc
     1741 ggttctcggc cgcacccagc gaacctatga cggtgttgac cgacgatacg gccgacgtga
     1801 tgctcgcgag agcagtagtt gcgttcgcca acgtgtcaac agagacgccg gccaggttca
     1861 gaccggtggc agagcttgca cgaagatcgc cgaggctcac gcttacgaga ttgtccgagt
     1921 cactggttgc accgctgccg acgcggaagg ctgcgctggt ggtgttggca gtgatgatcg
     1981 tagctgtgtc gagaccgcca cccgttccag agattgccgc ggtcggatcg ccggtgaatg
     2041 taaacgagat gcccatcttg tcgaagttca gcgtctgcgt accacttgct gcggtcgtaa
     2101 tggtctggga cgaggtagca ttgctgagct tgaggtgcgt gccatcaacc ttcgaaatgg
     2161 tgtatgtcgt attgacatcc gcgccggata cagaaaggcc ggagaacgcg acgttgttct
     2221 tggctgtgcc ggtgccggcg tcggtgacgc cgaagctgcc attcaacagc tgcgagccct
     2281 ggtacactgt gctgccgacc gtgcggtcga tttcggagta gagctgcgtg aactctgcgt
     2341 tgatcttctg gcgatcagtg tcggtgacgt tcgccgacgc ggactcggtc gcgagctgct
     2401 tcatgcgatc gaggatcgac gagatggtcg acgtcgcacc atccgcgatc tggagcagcg
     2461 agcccgcctg cgatgcattc tgctgggcct gctgcaagcc aacaccgttg ttgcgaagcg
     2521 agtttgcgat gctgagtcct gccgcgtcgt cacctgcacg gttgagacgg aaaccagatg
     2581 acagcttctg gatcgagctg gtcagctggg tctcgttcgt gttgaggttg ttcaacgcgt
     2641 tcatcgagtt gatgttgttc tgaataaaca ttacggtgtg gctcctttag cggtttgtgg
     2701 tagagcttcc ttgctccacc ctgtccggcc ggtctggccg tatggactat ttatcggcag
     2761 tgccgaggaa agctttaacg cgtaaggcgc ggaaaattcc gcgccttaca ggtcgaacga
     2821 ttccggggtg ccctgacagg gctcgagtgc ctcgtcacct acagtttgaa cgattcccgg
     2881 atgccgtagc tgctctcggc gagcactacc tggctgcctt cactgaggcg ggtgttgatc
     2941 accacgggac cctggagatt ggcggttggc agctcgccgg gtgcgccggg aagtgtgacg
     3001 attgccagga cgcttacctc gtctggcgag gctgcgtggg tttcagcggg gtccagatcg
     3061 aggttgtagc cctcgaagaa catgaaggga tcgacgagga gaaaggccag cgacgagtag
     3121 tcggcagact gaagccagta cacgtgcggc cgctcggagg ggagaagcac aaacgagcga
     3181 cattcaggga agccgaggag tccgcgcgga aaggtgagca gggaaccggg ctcgacggcg
     3241 atcgtgccta gtatgtcgga agctatggtg acggtgctgg gcatcgaata agcgagggcg
     3301 gcggatgtca tttcagataa tctgtcaggg tcatgccgag cacgcgcgat gttgcgagca
     3361 tcgcggattg atacgccgtc tggcgcgtta cgaggtcggt gattgcctgc tcctggtcga
     3421 cgttcgagag atttgtcttg aacgtcgtga ggttttgttg aagcgcagta atattggagc
     3481 ttgtgacctg tagctgattc tcacgcgcac cgagatcgcc gaccagagac tggattccct
     3541 gctgcgagct gttcaagctg gtgagtgccg ctccgattcc cgcctgatcg ttattgccaa
     3601 gcgcggtcga gagatccttg agcgactgga gcgtgccggt attgagcaac atctccgtcg
     3661 cattgtggtt ggacttgaag agctgacccg cagcgatctg ggtcgtatgc gttccggatg
     3721 gcgcggtccc ggtatagaag ggaggcgtcg tcgtgaccgg cgcagcggtt gtgttgtcgc
     3781 caccgaacag gtaggtgccc tgatattgag tgttgccggc ggccaccgca gaactgagaa
     3841 ggttgtcgac ctcctgtttc gcggcgagtc ggtcggacgc gctcgctgtc gcggtgccct
     3901 gctgcgttgc aatcgccgtc gcgcgagtca ctgtgtcg
//
LOCUS       DATIMD010000036         9075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4921277, whole genome shotgun sequence.
ACCESSION   DATIMD010000036 DATIMD010000000
VERSION     DATIMD010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9075
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4921277"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..542
                     /locus_tag="VLI40_00850"
     CDS             <1..542
                     /locus_tag="VLI40_00850"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSU95744.1"
                     /translation="RANDWEEDLDRGLEVIGGRSAALARFMASYTLLARMPAPARAPV
                     DVAAWIDRIVHMETRVSIDVERGPQLVIDADADQLDQMLINLIRNAADASLETGGGVT
                     VAWSVDESFVDISIHDEGFGLPETANLFVPFFTTKPGGSGIGLVLSRQIAEAHGGSLS
                     LTDGNGCEARVRLPVGPPL"
     gene            709..1155
                     /locus_tag="VLI40_00855"
     CDS             709..1155
                     /locus_tag="VLI40_00855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95745.1"
                     /translation="MTHATSSSERSDAPSVSGFWPAAARVLEGLIFLIMGLNGFLNFL
                     PHPATMPEKVGAFMGGLVATGYMIPLIFGVQVIVAVLLLSNRFVPLALAIIAPVIVNI
                     FAFHLFLLPSGFPPAAVAILAYLYLVWVYRSVYRPMLAAHVDPLRS"
     gene            1224..1628
                     /locus_tag="VLI40_00860"
     CDS             1224..1628
                     /locus_tag="VLI40_00860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSU95746.1"
                     /translation="MILVKASKESEAGALPSHDELAKMGAFNEELVKAGVMLAGDGLQ
                     ASSKGARVKFANGKTTVIDGPFAETKELVAGFWIWQVKSKDEAIAWLRRAPFDDTEVE
                     IRQIFEAEDFGDEFTPDLREQEDQLKAQIARG"
     gene            1726..2991
                     /locus_tag="VLI40_00865"
     CDS             1726..2991
                     /locus_tag="VLI40_00865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSU95747.1"
                     /translation="MTDSATHRAIDAVWRIESAKLIAGLTRMVRDVGLAEDLAQDALV
                     AALEQWPESGVPDNPGAWLMATAKRRAIDAMRHGKIVERKQDDVGREIEAQRGATAVD
                     LDAAIDDDVGDDLLRLVFISCHPVLSSEARVALTLRLLGGLTTDEIARAFLVTEPTIA
                     QRIVRAKRTLRDAGVPFELPRGDARIERLSSVLEVIYLVFNEGYSATAGDDWMRPALC
                     EDALRLGRILAELAPEEPEVHGLVALMEIQASRAHARVNQSGEPVLLLEQDRARWDQL
                     LIHRGLAALERAERRGDKRGSYTLQAAIAACHARARTADETDWDHIASLYAELVQLVP
                     SPVIELNRAVAVSMALGPAAGLAVVDTLVSDPSLRNYHLFPAVRGDLLAKLGRHDEAK
                     SEFERAASLTRNTRERNLLNDRAAAMSRT"
     gene            complement(3022..3738)
                     /locus_tag="VLI40_00870"
     CDS             complement(3022..3738)
                     /locus_tag="VLI40_00870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95748.1"
                     /translation="MTPPGSVAIRSAAVDFVDAVTRGSSDVAVVDPILAERDRAIPGS
                     LSRARLGTVLYILLTPEYAQASIDLIRELGIGEIVTFGYNDDPATFADILRRQARASR
                     GQLLVTALAPQLKALPPALHSRISHVSEEGHRIASVEQLASVCDITRWALARHFRAAG
                     IASPSGFVAALTLLRNYDVLSDRSLTLLNVARAVGLSSERALRRQCLAVSGLPVAVVR
                     EPLPIERFVESVVGTLTARS"
     gene            complement(3844..5172)
                     /locus_tag="VLI40_00875"
     CDS             complement(3844..5172)
                     /locus_tag="VLI40_00875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95749.1"
                     /translation="MIGMSFMEHLATAQSDAEFARTAAGFTLLQIYDSVKTNGVTSFQ
                     LDAIEKVEHDLAGLDLAPKVRAALEAMICAIPFWESDGPIRVGRKATYTSLLMYGDAL
                     GSEGEWRLAENVFALAGMDTELDGETWLSAESRLLMGRAARMCADWDTAQVAYHRAAQ
                     LGKEAGDCSIVFRAQIGEANILWSRGNLQTAQLRLDSIARRAKQSCPSVVPRVTLALA
                     GVANMTGEYEKAISVAFGILDTVDDDDELRYQTLVDLASFLTDYGLPSVASNALRLVQ
                     RSAPDRHVRRHATLNLLFLASHHEDSAEFDALRTALADERLTTRQQAQFALFTAQGWH
                     RFGRLAEARVAAEKAVQLANKYQHFQLVFEAEAELSDILRTLERAPHAAAASHSLPRH
                     SMTLAVSEDVTPNPSTAAVAINSLPPGIRRVVESLATMASDSDLAMSVAG"
     gene            complement(5169..6074)
                     /locus_tag="VLI40_00880"
     CDS             complement(5169..6074)
                     /locus_tag="VLI40_00880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95750.1"
                     /translation="MRYIVFLAPQAVGCVYSALSGYGMIDSMPDVRQLVAALALPDGD
                     CLVLDPALISADDAQSIAANLAQFPRSVVAFSSVSTAALASIAVLAQRAPVRFIFRGS
                     ANERSVLARATLLSPDAELCSALLSRIGGCMELLPPGIRERVIAMFRVGDGPHSPDAL
                     AAAASLTRRTVDRHLADAGFVSARRLVEAAHITSAYRAVTRSLIPFNTIASLLDYKTP
                     RTMDAQFTLLLDTTSGKLRARPLGVAEAADMLALRLTALKPSRKSDVPRNPAEDVKPS
                     LTLINGRSRPRHVRLKASGEQVIKP"
     gene            6814..7035
                     /locus_tag="VLI40_00885"
     CDS             6814..7035
                     /locus_tag="VLI40_00885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95751.1"
                     /translation="MLDSVVTFDVSTRVRELEQSIARRIREELRSYIRDEAQLERAVS
                     EVLMVSRDYAGSFHAISDRARIRRERDAE"
     gene            7361..8233
                     /locus_tag="VLI40_00890"
     CDS             7361..8233
                     /locus_tag="VLI40_00890"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSU95752.1"
                     /translation="MSKVSQDIVDAVIADSTVVVTLGVGMPRPDPNASGPATAVLVGS
                     RVFLFDAGSGVMRQLAAAHLPINGVTALFITHLHSDHTLGLPDLILTSWVMGRKSALS
                     AYGPHGLQAMTTHILEAWKIDEDVRTNGLEHEPANGYAVNVHEIQPGVVYDSGGVRIS
                     AIPVLHGSLKEAYAYRIDTPTRSVVISGDTRPSDALLAASRNVDVLVHEVYSAAKLAP
                     EKRPGGDDWPRYMHEFHTSDVELGKIAAEAKPKLLVLTHIIRMGASDEDLIRGVRAGG
                     FAGHVVVGHDLARY"
     gene            8446..8982
                     /locus_tag="VLI40_00895"
     CDS             8446..8982
                     /locus_tag="VLI40_00895"
                     /inference="COORDINATES: protein motif:HMM:NF024978.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4136 domain-containing protein"
                     /protein_id="HSU95753.1"
                     /translation="MLIAAIASVACASSNVDVQTQVAPQANFGSYRTFSIMTPRNAGR
                     GGNPASQADPMLNNSITNQALHGEIRQRLEASGYQPGGRDADLGVAVYAASRQTLDVT
                     SVDYGYPYRPWWWGPRQEVRPVTQGTVVIDVVDRHANRLVWRGVGRSEVSDNPDDYAK
                     DLRTAVDAVLKKLPKAGS"
BASE COUNT         1748 a         2690 c         2877 g         1760 t
ORIGIN      
        1 cgcgcgcgaa cgactgggaa gaggatctcg accgcggact tgaagtaatt ggcggaagat
       61 cagcagcgct cgcgcgcttc atggcgtcgt acacgttgct tgcccgaatg ccggcgccgg
      121 cgcgcgcacc cgtcgacgtc gcggcatgga tcgaccgcat agttcatatg gaaacccgcg
      181 tcagcatcga cgtcgagcga ggcccgcagc tggtgataga cgctgatgcg gatcaactgg
      241 atcagatgct catcaacctc atccgcaacg cggccgacgc ttcgctcgaa accggcggcg
      301 gtgtcactgt cgcgtggagc gtcgacgagt cgttcgtcga catatcgata cacgatgaag
      361 ggttcggcct gccggagacc gccaatctct ttgtcccgtt cttcacgaca aagccgggcg
      421 ggtcgggaat agggctggta ctcagccgtc agatcgcaga ggcgcacggt gggagtctgt
      481 cactgaccga cggtaatggc tgcgaggcgc gggtacggct tcccgttggg cctcctctat
      541 agaagtgtat ggcttccgag cgatcgttcg aatatacgta aatgatttgt tcggattccg
      601 tgtcgattcc acttcgcctc gttcgacgtg taggtaagag cccggatatt gccgcccaga
      661 gcggtcgcag ggctcgacga caaaaccacg gagaacgaga ggtagaaaat gacacatgcc
      721 acatcttcat cggaacggag cgatgcacca tcggtcagcg gcttctggcc tgcggcggcc
      781 cgggtgctgg aaggcttgat cttcctgatc atgggcctga acggatttct gaattttctt
      841 ccacatccgg cgaccatgcc cgagaaagtg ggggcgttca tggggggact tgtcgcgaca
      901 ggctacatga tcccactgat cttcggagtc caggtaatcg tggcggttct actcctgtcg
      961 aaccgtttcg tccctctggc ccttgccatc atcgcgccag tgatcgtcaa catcttcgcg
     1021 ttccatttgt tcctgttgcc atcgggattt ccgcccgcgg ccgtcgccat tctggcgtat
     1081 ctgtacctgg tctgggtcta ccggtcagtg tatcgcccga tgctcgcagc gcacgtagat
     1141 ccgcttcgct cgtaagccag atcaccacca cagttacaac caaccaacca accaaaacaa
     1201 gaggagattg gacaatgcga ttcatgattc tggtaaaggc ttcgaaagag tccgaagccg
     1261 gcgcgcttcc gagccacgac gaactcgcca aaatgggtgc gttcaacgaa gagctggtga
     1321 aggcgggcgt gatgctggcc ggcgacggac tccaggcgag ctccaagggc gcccgcgtga
     1381 agttcgctaa cggcaagacg acggtgatcg atgggccgtt cgccgagacc aaggagctgg
     1441 ttgcaggctt ctggatctgg caggtgaagt cgaaggatga ggcgatcgca tggctccgcc
     1501 gcgcgccgtt cgacgatacc gaagtcgaga tccgtcagat cttcgaagcc gaggacttcg
     1561 gcgacgaatt cactcctgat ctgcgcgagc aggaagacca gttgaaggca cagatcgcgc
     1621 gcgggtaggg attgggatcg tcattcctgc ggacgctggt ccgctttcgc gggaatgact
     1681 attcacaact tgaatatcag tcggtccgtc ccctgatttg tatgcgtgac cgactccgcc
     1741 actcaccgcg cgatcgacgc ggtctggaga atagaatcgg cgaagctcat cgctggtctc
     1801 acgcgcatgg tgcgtgacgt ggggctggcc gaagatctcg cgcaggatgc gctcgtcgcc
     1861 gcgctggagc agtggcccga atcaggagtt cctgacaatc cgggcgcatg gctcatggcg
     1921 accgcgaagc ggcgcgccat cgacgccatg cgtcacggca agatcgtcga gcgcaagcag
     1981 gatgatgtcg gacgtgagat cgaggcgcag cgcggtgcga ccgcagtcga tctcgacgca
     2041 gccatcgacg atgacgtggg tgacgacctg cttcgtctcg tattcatctc atgccacccg
     2101 gttctctcgt ccgaagcacg cgtcgcgctc acgctgcgac tgctcggcgg cctcacaacc
     2161 gacgagatag cgcgcgcctt tctcgtcact gaaccgacga tcgcgcagcg aatcgttcgc
     2221 gccaagcgca cacttcgcga cgccggcgtt ccgttcgagc ttccgcgcgg cgatgcacgc
     2281 atcgagcggc tgtcgtcagt actcgaggtc atctacctcg tattcaacga agggtactcg
     2341 gcgaccgctg gtgatgactg gatgcgtccg gcactgtgcg aggatgcact gcgacttggc
     2401 cgcattctcg cggagctcgc accggaagag ccggaagtcc acgggctcgt cgctttgatg
     2461 gagatacagg catcgcgcgc acatgcgcgg gtcaatcaat caggtgagcc ggtgcttctt
     2521 ctggagcagg atcgcgcgcg ctgggatcag ctactcatcc accgggggct tgccgctctg
     2581 gagcgcgccg agcgacgtgg cgacaagcgc ggatcataca cgctgcaggc cgcgatcgcg
     2641 gcatgtcacg cacgcgcaag aaccgcggac gagaccgact gggaccatat cgcgtctctg
     2701 tatgcggaac tcgtgcagct cgtgccgtcg ccagtcatcg agctcaaccg cgcagtcgcc
     2761 gtgtcgatgg cgttgggccc ggcagccggt ctggcagttg tcgacacact cgtatcggat
     2821 ccgtcactgc ggaactatca cctgttcccc gcggtgcgcg gcgatctgct tgccaaactt
     2881 ggccgtcatg acgaagcaaa atccgagttc gagcgcgctg cgtcgcttac gcgcaataca
     2941 cgggaacgca acctactcaa cgatcgcgca gcggcgatgt cacgaacata gctgtaaagt
     3001 accaccggct tttcgcggct ctcagctccg cgccgtaagc gtacccacca cgctttcaac
     3061 aaagcgctcg attggcaacg gctcgcggac caccgcgacc gggagtccgc tcacggcgag
     3121 acattgccgt cgcaatgcac gctccgagct cagtccgacc gcacgcgcga cattgagcag
     3181 tgtgagactt ctgtcggaga gcacgtcata attcctgagc agcgtgagcg ccgcgacgaa
     3241 tcctgacggc gaggcgatgc ccgccgctct gaagtggcgt gcgagagccc atcgcgtgat
     3301 gtcgcacacg ctggcgagtt gttccaccga ggcgatccgg tgaccctctt cgctcacatg
     3361 actgatgcgg ctgtgcagcg cgggcggtag cgccttgagt tgcggtgcga gtgctgtcac
     3421 gagcagctga ccacgcgaag cacgcgcctg gcgtcggagg atgtcggcaa acgtcgcggg
     3481 gtcgtcgttg tatccgaagg tgacgatctc cccgatcccg agctcgcgaa tgagatctat
     3541 cgatgcctgt gcgtattccg gcgtgagcaa tatgtagagc acagtgccga ggcgcgcgcg
     3601 agacaatgag ccgggaatcg cgcgatcgcg ttccgcgagt attggatcca cgacggcgac
     3661 atcggacgat ccacgcgtta cagcatccac gaagtcgact gcggctgacc gtatcgccac
     3721 cgatccagga ggcgtcacgg ccgcgcgagc gcgttcgtgg aacggcctcc gtaacatcgc
     3781 cagcgctctc attcaacgcc gcggatcgtc cgcgtcaaga cgacgtttcc tcgcgcgtcc
     3841 cgtctaccct gcaacgctca tggcgaggtc gctgtcagag gccattgtcg cgagcgactc
     3901 gacgacccgg cgaatccctg gcggaaggct gttgattgcg accgcagcgg tcgatgggtt
     3961 gggcgtcacg tcctcgctca ccgccagagt cattgaatgg cgtggcagtg aatgtgacgc
     4021 cgccgcagca tgaggagccc gctcgagtgt ccgcagaatg tcactcagct ctgcttctgc
     4081 ctcgaagacg agttgaaagt gctggtactt gtttgcgagc tggaccgcct tttcagccgc
     4141 cacgcgggcc tcggcgagcc ggccgaaccg gtgccagccc tgcgcggtga acagcgcgaa
     4201 ctgcgcctgc tgacgcgtcg tcagccgctc gtcggcgagc gcggtgcgaa gcgcgtcgaa
     4261 ttcagcggag tcttcgtggt gcgacgcgag gaagagcaga ttgagcgtcg catgtcgtct
     4321 cacatgccgg tccggcgcgg accgctgtac gagacgcagt gcattggacg caaccgacgg
     4381 caggccgtaa tcggtcagga atgacgcgag atcgaccagc gtttgatatc tgagctcgtc
     4441 gtcatcgtcc accgtgtcga gaataccgaa ggcgacagag atcgccttct cgtattcgcc
     4501 ggtcatgttc gcgacgcccg caagcgcgag cgtgactctc ggcacgaccg acggacatga
     4561 ttgtttcgcc cgccttgcga tgctgtcgag gcgcagttgc gccgtctgaa gattaccgcg
     4621 actccagagt atgtttgcct caccgatctg cgcacgaaac acgatggaac agtcgccggc
     4681 ttcctttccg agctgtgccg cgcgatggta ggcgacctgt gcggtatccc agtcggcgca
     4741 catgcgcgcc gcgcgcccca tcaacaggcg cgactccgcc gagagccatg tttcgccgtc
     4801 cagctcggtg tccatgccag cgagtgcgaa tacgttttct gccagccgcc actcgccttc
     4861 gcttcccagt gcgtctccat acatcagaag cgaagtgtat gtcgcctttc ttcccacgcg
     4921 gatcggtccg tcgctttccc agaacggaat cgcacagatc atcgcctcga gcgcagcgcg
     4981 caccttcggc gcgaggtcca ggcccgccag atcgtgttcg accttctcga tagcatccag
     5041 ctgaaacgac gtcacgccat tggtcttgac gctgtcataa atctgcagga gcgtgaatcc
     5101 tgcggctgtg cgcgcgaact ccgcgtctga ttgcgcagtt gcgagatgtt ccatgaatga
     5161 catgccgatc atggtttgat tacctgttcg ccggacgcct tgaggcgtac gtgtcgtgga
     5221 cgggatctgc cgttgatgag tgtcagcgac ggctttacgt cttccgcggg attgcggggg
     5281 acgtcggact tgcgactcgg cttgagtgcc gtaagtcgaa gtgcaagcat gtcagcggcc
     5341 tcggcaacgc cgaggggtcg ggcacgaagt ttcccactcg ttgtgtcgag cagcaatgtg
     5401 aactgcgcgt ccatcgttct cggcgtcttg taatcaagca gggacgcgat ggtattgaat
     5461 ggaatgagag atctggtaac ggctcggtag gcggacgtga tgtgcgcagc ttcgaccagt
     5521 cttctcgcgg aaacaaaccc tgcgtcggcg agatggcgat ctacagtgcg acgcgtaagc
     5581 gaagcagccg ctgccagtgc atcgggcgaa tgtggtccgt cgccgaccct gaacattgca
     5641 atcactcgct cgcggatccc cggaggcagc agttccatgc agccaccgat cctggagagc
     5701 aatgccgagc acagctcggc gtcgggagac agaagggttg cacgggccag gacggaacgc
     5761 tcattcgcgg acccgcgaaa gatgaagcgt acgggagccc gctgagcaag tacggcgatg
     5821 ctggcgagcg cggctgtgct caccgagctg aaggcgacta cggagcgtgg gaattgcgcg
     5881 agattggccg cgatcgactg ggcgtcgtct gcgctgatca gtgccggatc gagtacgagg
     5941 cagtcgccgt ccggcaatgc gagcgcggcc acgagctggc ggacatccgg catcgaatcg
     6001 atcatgccgt atccgctcag cgccgagtac acgcagccca ctgcctgggg cgccagaaat
     6061 acgatgtacc tcaattcagc tccaacggtg agccagtggt ccgggacatt atgcccctcg
     6121 atctgcaacc cttccataag gtagtgcgca ttcggcgccg cgaaactgcg atttcaagcc
     6181 aaccactgcg atttcaagac acgcatctga cgcagtgtct acagccccat gcccggtgtc
     6241 aggccgccgt tgagcgcggt ctggcaccgg gccgaaccgg gagtcggcta tggctgtgtg
     6301 gcgaccttga tgacggctgc ggactgggag gtgctatcgg tgccacagcg gtcccagccc
     6361 tgggttccgc cgccgctgca cagggcgttg gagcgagggg cggtgggttc ggcgcaagcg
     6421 acagcgagcg cggctaggac tgcaccaacg acggcgatgt atctggtcgt actacgcaca
     6481 tggtctccgg caaggggttg agcagggaga ttacagcgaa accgtcccgg gcgaaacgct
     6541 gatttgcgcc aattacctgc gcttttgtgc gcgtggcctg gggtggcttg aaatcgcata
     6601 tgctgtcttg aatgcgcact tgtccgatcc atggcgcgga gcaaatgtat gcagtatgtc
     6661 tgcggcatgc ggaaccggcc ggacaccggt acgtggcgtc gttcgagaaa tgaactcagc
     6721 caagcgcctt aaggaatgag cggcgtcacg taccagtcct cacccgcata gccggttctc
     6781 accatttccc atcagcatcg tatacggtaa gtcatgctcg actcagttgt tacgtttgac
     6841 gtctccacca gggtgcgcga gctggagcaa tcgatcgctc ggcgcatacg cgaggagttg
     6901 cggtcctaca ttcgcgacga ggcgcagctg gagcgcgccg tgagcgaggt cctgatggtc
     6961 agcagggact acgcggggtc gttccatgcg atcagtgatc gtgcgcggat aagacgggag
     7021 cgagacgcgg agtaggcgat gtgtgtgcgc tgcgatcgag cacgcatcgt ccgataacaa
     7081 gccacggcca gcgcagtgaa gtaagtgtca cgccaccgaa tggcgtccct cacgggctta
     7141 tgtcatcctg ccatactgcc ggcgcctgtc agaggctagc ttaagaatct accgtctgat
     7201 gatgaggtgg tgcagtatgc ggtttgcgca tcgatcgctt tctctggcca taacgtcagt
     7261 actggtactc gcaccatcta cgcgcgcagt gacgccgagt cacgaaatta cctctggtgg
     7321 acacgttcaa cgtccatggc gagctgcgcc tgtgcatctc atgtccaaag tctcacagga
     7381 tattgttgac gctgtcatcg ccgacagcac cgttgtcgta acgctcggtg ttggaatgcc
     7441 gaggcctgat ccgaatgcgt cagggcccgc tactgctgtg ctggtcggct ctcgcgtttt
     7501 tctattcgat gccggatctg gagtcatgcg ccaactggct gcggcgcatc ttccgatcaa
     7561 cggagtcacc gcactgttca tcactcatct gcacagcgat cacacactcg ggctcccgga
     7621 cctgatcctc acgtcatggg tgatgggtcg caagagtgcg ctgtcggcgt acgggccaca
     7681 cggattgcag gcgatgacca cgcacattct ggaggcgtgg aagatcgatg aggatgttcg
     7741 caccaatgga ttggagcacg agccggccaa cggatacgct gtgaatgtgc atgagatcca
     7801 gcccggtgtg gtttacgaca gcggtggcgt gcgcatctcg gcgatcccgg tgctgcacgg
     7861 tagtctcaag gaagcgtacg catatcggat cgacactccc acgcgttcgg tcgtgatctc
     7921 aggtgacacg cgaccgtcgg atgcgctgct tgctgcttcg cggaacgtgg acgtgctggt
     7981 tcacgaggtg tattccgcag cgaaactggc tcctgagaaa cggccgggcg gcgacgactg
     8041 gccgcggtac atgcacgagt tccacacgtc ggatgtggag cttgggaaga ttgccgccga
     8101 ggcaaagccg aagctgcttg tgcttactca catcatacgg atgggggcga gcgacgagga
     8161 tctgattcgt ggtgttcgtg caggcggctt cgcggggcac gttgttgtgg gtcacgatct
     8221 ggcccggtac tgaaacggag taaacgaaca ggatcacgat ccgaacggtc gttcgagaca
     8281 cgtacgtccg atggatagcc gactctgttc gcagcaggag tggttatggg catgcggcct
     8341 gccctcttcg cgagatcgct gtatatccat cacgcgaggt caaaggcaat catgcgcgcc
     8401 agaacagctt tgccgaatca atttgctgta cgtcgagtca catggatgct gatcgcggcg
     8461 atcgcctccg ttgcatgtgc gtccagcaat gtcgacgtcc agacgcaggt cgctccgcaa
     8521 gcgaatttcg ggagttaccg cacgttcagt atcatgactc cgcgcaacgc gggacgaggg
     8581 ggaaatcctg cgtcgcaggc cgatccgatg ctcaacaatt cgatcaccaa ccaggcgctg
     8641 catggtgaga tccggcagcg gctcgaagcg tcgggttatc agcctggcgg tcgcgacgcg
     8701 gacctgggcg tcgcggtgta cgccgccagc cgtcagacgc tggacgtgac cagtgttgat
     8761 tacggctatc cgtatcgccc gtggtggtgg ggcccgcggc aggaagtgcg gcccgtgacg
     8821 cagggaacgg tcgtcatcga cgtcgtggac cggcacgcga atcggctcgt ctggcgcggc
     8881 gtgggtcgca gtgaagtgtc ggacaacccg gatgactatg cgaaggacct gcgcacggcg
     8941 gtcgatgcgg tgctgaagaa gttgccgaag gcggggagtt agatcggcgg atatgatctc
     9001 gatctattga agtgcaatcg aaaccggatt gacgggtctc gatccattct ccatcgcaat
     9061 tttacaacag acccg
//
LOCUS       DATIMD010000037         4082 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3478038, whole genome shotgun sequence.
ACCESSION   DATIMD010000037 DATIMD010000000
VERSION     DATIMD010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4082
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3478038"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            436..789
                     /locus_tag="VLI40_00900"
     CDS             436..789
                     /locus_tag="VLI40_00900"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSU95754.1"
                     /translation="MKYLCLIYDEESLWQKMSPDEMGRIMGEYNAFGNDIKASGHYIG
                     GDALQPTSSATTIRVRNGKAITSDGPFAETKEQLGGYYMIEATDLNDALQVAGRIPGA
                     KLGSIEVRPVMVFNS"
     gene            806..2062
                     /locus_tag="VLI40_00905"
     CDS             806..2062
                     /locus_tag="VLI40_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSU95755.1"
                     /translation="MTDASARAREIVESTYRSDSRRVLATLVRLLGDFDVAEEALHDA
                     FVAAMERWPVDGVPANPRTWLVSAGRFRAIDHMRRRARFDARHAEIAAEMESYVMPGV
                     HGSDDDEIPDDRLRLIFTCCHPALAIEAQVALTLRTVGGLTTEEIARAFLVPAPTLAQ
                     RIVRAKNKIRDARIPYEIPGQADLPERIDAVLAVIYLIFNEGYSATFGDEVTRADMCA
                     ESIRLARMLAELHEDSEVDGLLALMLLHDSRRAARIAGGGEPILLDDQDRTLWDQVRI
                     REGIALTTRALASGRVGPYALQAAIAAVHAESRTAAETDWGEIVGLYDVLLRIHESPV
                     VELNRAVAIAMRDGEVRGLSLIDELMRKGELAGYYLAHSARGALLLRAGRRDEAIESY
                     AMARSLATQVQEQRFLDRRLSEIGDR"
     gene            2110..2775
                     /gene="nth"
                     /locus_tag="VLI40_00910"
     CDS             2110..2775
                     /gene="nth"
                     /locus_tag="VLI40_00910"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HSU95756.1"
                     /translation="MAKLPFDISVVLRRIRKEVEQYADAAMFELRDRNFDSLFQQLVA
                     CVISIRTRDEVSLPAALRLFEVAPGPEEISRLDADEIDELIHPATFHTGKAKQIHDIA
                     VRTIEEFDGKLPADAEVLKSFRGVGPKCANLALGVAAGQSRISVDVHVARVTTRWGYV
                     KAGSAESVQRQLEEKLPKRYWIEINRLLVPFGKNVCTGARPKCSTCPVLEYCRQVGVT
                     DHR"
     gene            2880..3188
                     /locus_tag="VLI40_00915"
     CDS             2880..3188
                     /locus_tag="VLI40_00915"
                     /inference="COORDINATES: protein motif:HMM:NF014643.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008219 - cell death [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HSU95757.1"
                     /translation="MSETKPKQVNLYEAKTHLSQLVKEAAAGREIIIANAGEPMARLV
                     PLATEPKPLREPGQWKGRIWIADDFDDPLPEDILALFEGSEDGEIEPPSDTTEDIEEK
                     "
     gene            3185..3559
                     /locus_tag="VLI40_00920"
     CDS             3185..3559
                     /locus_tag="VLI40_00920"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HSU95758.1"
                     /translation="MKLLLDTKVVLWWQGDLGKLAERARVTIRAADEVYISAASAWEA
                     EIKRSLGKLAFPQSFGDILVFNNFKELPVTLAHAAASAALPHHHRDPFDRMLIAQASV
                     EGCTLVTADRKLAVYGVALILA"
     gene            complement(3574..4020)
                     /locus_tag="VLI40_00925"
     CDS             complement(3574..4020)
                     /locus_tag="VLI40_00925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95759.1"
                     /translation="MRFHTFGSLAAVALLAAFAACTDNTSPNNRSAGGTYDLQTVNGT
                     SLPYSYNTSSGTLTIVSDIYTLNNDGTYNETISETISNGFSNSAASDAESGTWYQNGN
                     AIVFSPTYSTQNNYTQYTGALSGSSTFSHSSITFSYNGVVWVYNHT"
BASE COUNT          797 a         1127 c         1369 g          789 t
ORIGIN      
        1 tgtatctcgc ctcggacgat gccgcgtgga ttaccggcgt catactcgac gtcactggcg
       61 gcgccgtgat ggtgtgacga cgggcggaat acgatccggt ggcgattacg attccgacga
      121 acggggccgg gcgcggataa attcggggac atccacgttc gtccacgttt atccacgttc
      181 acccgcgttt atccgcgttc gattgcgccg acgggggcca ggcgcggatg aatccgcgcc
      241 ctacgcggga ccgccaattc ggcgcatggt cagtgacgtc gagggtgacc gccaattcgg
      301 tgcgtgatca gcgtcgggaa tgaccacgaa ccgggcgcgt ggcgaggtgt ttttttgcgg
      361 ggtgtcgatt ttgtggtggg ccgttcgact attgcatgaa ggcgcaggaa aatcacccct
      421 ttcaccgagg ctgaaatgaa gtacctctgc ttgatttacg acgaggaatc actctggcaa
      481 aaaatgtcgc cggacgagat gggcaggatc atgggcgagt acaacgcatt cggcaacgac
      541 atcaaggcca gcggccacta catcggtggc gatgcgctcc agccaacgtc atccgccacg
      601 acgattcgcg tgcgcaacgg aaaggccatc acgtccgatg gcccgttcgc cgagaccaag
      661 gagcagctcg gcggatacta tatgatcgag gctacggatc tgaacgacgc gctacaggtt
      721 gccggcagaa ttccaggcgc caaacttggc tcgatagaag tacggcccgt catggtgttc
      781 aacagctgac ggcagctctg ctgcaatgac ggatgcttcg gcgcgtgcgc gagagatcgt
      841 ggagagcacc taccggtccg actcgcgccg cgtccttgca acgctcgtcc gtctgctcgg
      901 cgacttcgac gttgcggaag aagcattgca tgatgctttc gtagcggcga tggagcgatg
      961 gcctgtcgat ggcgttcccg cgaatccgcg cacgtggctg gtgagcgccg gccgcttccg
     1021 ggcgatagac cacatgcggc gtcgcgcgag gttcgacgcc cgccacgcgg agatcgccgc
     1081 tgagatggag tcatacgtca tgcccggtgt tcatggcagc gacgacgacg agattcctga
     1141 cgacagactg cgactcatct tcacctgctg tcatccggcg ctcgcgatcg aggcacaggt
     1201 tgcgctcacg ttgaggaccg tcggcggact cacgacggaa gagatcgcgc gcgcctttct
     1261 cgttccagcg ccgacgctgg cgcagcgcat agtgcgcgcg aagaacaaga tcagggacgc
     1321 gcgaattccg tatgagatcc caggtcaggc cgatctgccg gagcgcatcg atgccgtact
     1381 tgcagttatc tatctgatct tcaacgaagg ctattcagcg acgttcggcg acgaggtgac
     1441 gcgcgcggac atgtgcgcgg agtcgattcg actggcgcgg atgctcgccg agctccatga
     1501 agattcggaa gtcgacggtc tgcttgcgct gatgttgttg cacgactcgc ggcgggccgc
     1561 gcgcatcgct ggcggtggcg agccgattct gctggacgat caggaccgga cgctctggga
     1621 ccaggtcagg attcgcgaag ggattgcgct caccacgcgt gcactcgcat cagggagagt
     1681 cgggccttat gcattgcagg cggcgatcgc agcggtgcat gccgaatcga gaacggcggc
     1741 ggagactgac tggggcgaga tcgtgggact gtatgacgtg ttgttgcgga tccacgagtc
     1801 gccggtagtc gagctgaacc gcgcagtagc gatcgcgatg cgggatggag aggtgcgtgg
     1861 cctgagcttg atcgacgagc tcatgcggaa aggagagctc gcgggatact acctcgcgca
     1921 ctcggcgcgt ggtgcgctgt tgttgcgcgc gggtcgcagg gacgaggcga tcgaatcgta
     1981 tgcaatggcc agaagccttg cgacccaggt acaggagcag cgctttctgg atcgccggct
     2041 gtcggagatt ggcgacaggt agcagcgccg agtgtgtagc ggcccgcgcc atgcaatccg
     2101 acggcggcga tggcaaagct tccatttgac atttcggtgg tgctccgtcg catccggaag
     2161 gaagtcgagc agtacgccga cgccgcgatg ttcgagctgc gcgaccggaa tttcgactcg
     2221 ttgtttcagc agctggtcgc gtgcgtgatc tcgattcgca cgcgtgacga ggtgagcctg
     2281 ccggcggcgc tgcgactgtt cgaggtcgcg cccggtcctg aggagatatc gcggctggat
     2341 gcggacgaga tagacgagct gattcatccg gcgacgtttc acaccgggaa ggcgaagcag
     2401 atccacgaca tcgctgtccg caccatcgag gagttcgacg gcaagcttcc ggctgacgcc
     2461 gaggtactca aatcatttcg tggtgtcggt ccaaagtgcg ccaaccttgc gctcggcgtt
     2521 gcggccggcc agagccgcat cagcgtggat gtgcacgtgg cgcgggtgac gacgcggtgg
     2581 ggctatgtga aggctggaag cgcggagtcg gtacagcggc agctggagga gaagctgccc
     2641 aagcggtact ggatcgagat caaccggcta ctcgtgccgt tcggcaagaa cgtgtgcacc
     2701 ggggcgaggc ccaagtgctc gacctgtccg gtactcgagt actgtcggca ggtcggggtt
     2761 acggatcatc gatgaccggt ctgcaggcgc ccgatcaaga tagaggagcc tattgaccaa
     2821 tcagaccaac caatttgacc agacctccat atcggcctag ctttcgatca ggaggtccga
     2881 tgtcggagac caagcccaag caggtaaatc tgtacgaggc caagacccac ctttcgcagc
     2941 tcgtgaaaga ggccgcggcc ggccgagaga tcatcatcgc gaacgctggc gagcccatgg
     3001 cgcgtctggt gccgctggcg actgagccca agccgttgcg ggagccgggg cagtggaagg
     3061 gaaggatctg gattgcagat gacttcgacg atccgctccc ggaggatatc cttgctctat
     3121 ttgagggaag tgaggacggc gagatcgagc ctccgagcga caccaccgaa gacattgaag
     3181 agaagtgaag cttctcctcg atacgaaggt ggtgttgtgg tggcagggcg accttggcaa
     3241 gctcgccgag cgagcgcgtg tgactattcg cgccgccgac gaggtataca tcagcgccgc
     3301 ttcggcgtgg gaagcggaga tcaagcgttc tcttggcaag ctcgcgtttc cacagagctt
     3361 cggcgacatc cttgtattca acaacttcaa ggagcttccg gtaacgctcg cgcacgcagc
     3421 tgccagcgcc gctttgccgc atcatcaccg tgatccattc gatcgcatgc tgatcgcgca
     3481 ggcgagcgtg gaagggtgca cgctcgtcac tgcggatcga aagctggcgg tgtacggggt
     3541 tgctctaatc ctggcctagg agcagtcctg tcgtcaggtg tggttgtaca cccacaccac
     3601 gccgttgtac gagaaggtta tcgagctgtg gctgaatgtc gagctgccgg atagcgcgcc
     3661 agtgtattgc gtgtagttgt tctgggtgct gtaggtgggc gagaacacga ttgcattccc
     3721 attctgatac cacgtcccgg actcggcgtc actcgcagca gagttgctga agccgttcga
     3781 gatggtctcg ctgatcgtct cgttgtaagt gccgtcgttg ttgagcgtgt agatgtcact
     3841 gacgatcgtg agcgtgccgg agctcgtatt gtacgaatag ggcagagacg tgccgttcac
     3901 ggtttgaagg tcgtacgtgc cgcccgccga gcggttgttt ggagaagtgt tgtcggtgca
     3961 tgcagcgaag gccgcgagca atgcaacagc cgccagggaa ccgaaggtat gaaagcgcat
     4021 gtgagtaatc ctctcgagtt ctgtctgtca gttagacgcg gcgtacaacc ggatgtgaag
     4081 aa
//
LOCUS       DATIMD010000038         5606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1746849, whole genome shotgun sequence.
ACCESSION   DATIMD010000038 DATIMD010000000
VERSION     DATIMD010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5606
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1746849"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(50..1792)
                     /locus_tag="VLI40_00930"
     CDS             complement(50..1792)
                     /locus_tag="VLI40_00930"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSU95760.1"
                     /translation="MTAPAPRSIARQRRVTRTLPPHMAAWELPPGWRWGAEGIAGDFR
                     HYQEVIDGLGRALALVTAPDPAHHRWLHAEAIGLAHRSHPSIPTTYHFWTNQRDRGPG
                     YLRRWVSGESAGARFEGMGAADVPYVLRILREAGSTLAYLHSTGAVHGALSGDALWIT
                     PTGRFWMLEWQWAVPHDDLPAGLHPPLDQAPIPPEWEHGWVPTPESDQWQLAAMCFAM
                     LTGEPAPTHDTPPVKLLRPETPESVALALDRALLPDPAHRFESMAALIRAAERGYGAE
                     PVGAPNRAKSQVAVPEDANERAVRDAVGYDYEILSKLGSGGFGTVWRARDLALERESA
                     LKVLHPYIARNAEAVGAFWQEARLAAQLAHPAIVPIYDWDGRAGLSWYTMELAEGGSV
                     AQLIARRGARSLEEIAPHVDLILDGLSAAHAIGVVHRDLKPENVLIDRYHRWRLTDFG
                     IAHVIGEDAMLTGGTIEFAAPEQLLGEAQTSSVDCFSLAAVVAFVLTGELPFRGNDVQ
                     AILAHQLGERTDLSELPAPIEEWLRKGLAPRPLDRFADAAEMRLAWRAAASAALKRER
                     ALRWWRRLIPLGRR"
     gene            1841..2503
                     /locus_tag="VLI40_00935"
     CDS             1841..2503
                     /locus_tag="VLI40_00935"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HSU95761.1"
                     /translation="MSPDPQNVDPKLRPKLLKQMTPGDVAETLSRDPRLILPIGTIEK
                     THPSLPMGASTIVVDCVADALSAEFGVLRAPTVEYGVNAVSEPEYPASVTLRKKTLHR
                     MLNDLLTTWECHGINEFVLLTAHGYDPHLEAISTVGTVRARVRVVDLFAVNLSDLTGV
                     RRSEDDRGGVYASLLLYLTPSLVHAGDAESGASAEQGRALYERIRARVSERIFLAPVP
                     SE"
     gene            2695..4203
                     /locus_tag="VLI40_00940"
     CDS             2695..4203
                     /locus_tag="VLI40_00940"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU95762.1"
                     /translation="MKPRLIWGIAAVTALIAASGSARAQVAGSATMPGAAPTALTIDQ
                     AVALAQHNNPDFLTTRNNARNASLALRSAYGGLLPTLSASLTGQYQQGGQQFFNGVSL
                     SANSDVMQSQYNIGLNYRINAATFIAPKVQRANVAAVDADIAGAKEALAATVRQDYLT
                     ALQSRALTQLNDSLVANAQVQLELARAKAQVGTGTLLDVQRAEVALGQQQVALLQARN
                     QNDIDKLRLFQQMGVAQPADVELVTTFSVSDSLPPLPDLLAMAKRQNPGIVALRSRED
                     LANLTVKSERTEYTPTLTLSTGIGGYTYQYRDPNFLVNQAEASTQSARSSCVATQEVR
                     QAVGLPNTLSQCANLVFTPAMANNLRAQNSQFPFSFTPSPRSISAQISLPIFDGFARE
                     QRVQQAVVTRENARYNVRARELALQADVSAAYLSLQTAKQTVALQEQNSAKAKQELQF
                     VQDQYAVGLATFVDLTTSRAAYAQAENDRINAIYNYHKAVAALESAVGRPLR"
     gene            4215..5510
                     /locus_tag="VLI40_00945"
     CDS             4215..5510
                     /locus_tag="VLI40_00945"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSU95763.1"
                     /translation="MQKRTKSIVAVAALAAVVLVGVIAATKSRSKAVDVKIEAVGTRD
                     LVASVTASGQVASHTKVDVASDVSGRITRLAVKEGDMVKKGQFLLEIDPSQYQAAVGR
                     NVAAVASSRAQVEQAKATLAQAQSTYQRTADLQKRNPKLVSADQVDQLLTAVKVNQAL
                     VDNATHGVAQAEAALRDAQSSLDKTTIVSPIDGQVTRLNVEQGETAIQGTLNKDAATL
                     LTVSDMNNLETKVKVNETDVAHVKVGDSAIVQIDAFPDTTFRGKVTEISNSSLTAATT
                     TGNGSSQADQAVDYYVTVQLLNPPAQTRPDFSATAKIITDTRPHALAIPIIALTIREN
                     GPVTTGGDSAAAVGKTPVKEVGKKDADGVFVVGADNKVTFRPVKVGIAGEQYFEVLSG
                     LKPGDKIVSGTYQAIRDLKDGTVVRAAKPAKMGDSTKSS"
BASE COUNT         1155 a         1812 c         1719 g          920 t
ORIGIN      
        1 gaccgctcca tgcacgaagc cggtcatgcc tgcatggcgc agcagccgat catcgacgcc
       61 cgagcgggat caatcttctc caccatcgca aggcacgctc ccgcttgaga gcagccgaag
      121 cggcagcccg ccaggcgagc cgcatttccg ccgcatcggc gaagcgatcc agcggccgcg
      181 gcgccagacc cttgcgcagc cactcctcga tcggcgcagg aagctcggac agatcggtgc
      241 gctccccgag ctgatgtgca agaatggcct ggacatcgtt gccgcggaat ggcagctcac
      301 cagtaagcac gaatgcgacg acagctgcaa gcgaaaagca atccacagac gaagtctgcg
      361 cttcaccaag cagttgctcc ggtgcggcaa attcaatcgt gccgccagta agcatcgcat
      421 cctcgccgat cacatgcgcg attccgaaat cagtgagacg ccaacgatga taccggtcga
      481 tcaggacgtt ttccggcttg agatcgcggt gtaccacacc gatcgcatgc gccgcactca
      541 atccatcgag tatcagatct acatgcggag caatctcctc gagactgcgc gcgccgcggc
      601 gcgcgatcaa ctgcgcgaca gagccgcctt cggcaagttc catcgtgtac caggaaagcc
      661 ctgcccttcc gtcccagtcg taaatcggaa cgatcgccgg atgcgcaagc tgtgcagcga
      721 gccgagcctc ctgccagaac gcgcccaccg cctcggcgtt tcgcgctatg tagggatgca
      781 gaacctttag agcactctcc cgctcgagag ccaggtcgcg cgcgcgccac acagtcccga
      841 agccgccgct gccaagcttg gacaggatct catagtcgta gccgacagcg tcacgtaccg
      901 cgcgctcgtt ggcatcctcg ggaacagcaa cctgcgattt ggcacgattc ggtgcaccga
      961 caggctccgc tccgtagccg cgctccgctg cgcgaatcag cgcggccatt gactcgaacc
     1021 tgtgcgccgg atccggaagc aaggcgcgat ccagcgcgag cgcgacggac tcgggagtct
     1081 cggggcgcag cagttttact ggcggcgtat cgtgcgtcgg tgccggctcg ccggtgagca
     1141 tggcgaagca catcgccgcc agttgccact gatcgctctc cggggtcggt acccacccgt
     1201 gttcccactc cggtggtatg ggcgcctgat cgagaggcgg atgcagaccg gccggaaggt
     1261 cgtcatgcgg cacagcccac tgccattcca gcatccagaa tcgacccgtc ggcgtgatcc
     1321 agagcgcgtc cccgctcagc gctccgtgaa cggctcccgt gctgtgcagg tatgccagcg
     1381 tcgatcccgc ctcgcgcagg attcgcagca cgtacggcac gtcggcggcg cccatccctt
     1441 cgaagcgcgc gcccgcgctc tcaccagaaa cccagcggcg cagatagccc ggtccccggt
     1501 cgcgctggtt ggtccagaag tgatacgtcg tgggaatcga cgggtggctt cgatgcgcga
     1561 gcccgatcgc ctccgcatga agccatcgat ggtgggccgg atccggcgcg gtgacaaggg
     1621 cgagcgcgcg tccgaggccg tcaattactt cctggtagtg gcgaaaatcg ccggcaattc
     1681 cttccgcccc ccagcgccag ccgggtggaa gctcccatgc cgccatgtgc ggggggagcg
     1741 tgcgcgttac gcgccgctgg cgggcgatcg agcgaggtgc gggcgcggtc atcaggttgc
     1801 tgttaatata ggactgcctt cacataaaga gcgtggtaca gtgtctccag atccgcaaaa
     1861 cgtcgacccg aagctgcgtc cgaagctgct caagcagatg acgcccgggg acgtagcgga
     1921 gacgctgtcg cgggatccac gcctgattct ccccataggc acgatcgaaa agacccaccc
     1981 gagcctgccg atgggcgcat ccacgatcgt cgtcgactgc gtggcagacg cgctttcagc
     2041 cgaattcgga gtacttcgcg ctcccacggt cgagtatggc gtcaacgcag tttcggagcc
     2101 ggaatacccg gcgagtgtca cactccgcaa aaagacactc caccgaatgc tcaacgacct
     2161 gctcacgacc tgggagtgcc acggcatcaa cgagttcgtg ctcctcaccg cgcacggcta
     2221 cgatccgcac ctcgaggcga tctcgacggt gggaaccgtt cgcgcccggg tgcgcgtcgt
     2281 cgacctcttc gctgtaaacc tttccgatct gaccggtgtc agacgcagcg aagacgatcg
     2341 tgggggtgtt tacgcctcgc tcctgttgta tctcacccca tcgctcgtcc acgctggaga
     2401 cgccgaatcg ggcgcttccg cggaacaggg acgtgccctg tacgagcgaa ttcgtgcgcg
     2461 ggtaagcgaa cggatcttcc tcgcaccggt cccgtccgag tagcgtcgaa gaagcggctt
     2521 gacatgacgt tgcgtcaggg cgtcagaatg aagggccgtc ccattcggga agagtgaaga
     2581 aattgcttga cagcaggacg ggacagacat agtgtattag ttgaccgata cactacacac
     2641 cagacggctc gcatgctcgg gtcgttcaac gacgaatctt tcacgtattc ataaatgaag
     2701 cccagactga tttggggcat cgcggctgtt accgcgctga tcgccgcttc cggttccgcg
     2761 cgcgctcagg tcgccggcag tgcgacgatg cctggcgcag caccgaccgc cctgacgatc
     2821 gaccaggcgg tagcgctggc gcagcacaac aatccggatt ttcttacgac acgcaacaac
     2881 gcgcgcaacg catcgctcgc gctacggagc gcgtacggcg gcctgctgcc gaccttgagc
     2941 gcgtccctca ccggacagta tcagcagggc ggacagcagt tcttcaatgg tgtctcgctg
     3001 agcgcgaaca gtgacgtgat gcagtcgcag tacaacatcg gcctcaacta tcgcatcaat
     3061 gcggcgacgt tcatcgcgcc caaggtgcaa cgcgcaaatg tggccgcagt ggacgccgac
     3121 attgccggcg cgaaggaagc gctcgccgca accgtacgac aggattacct gacggcgttg
     3181 cagagtcgcg cgctcacaca gctcaacgat tcgctcgtgg ccaacgcaca ggtccaactc
     3241 gagctcgctc gcgccaaggc gcaggtggga accggtacgc tcctcgatgt tcagcgcgcg
     3301 gaagttgcac tcggccagca gcaggttgcg ctgctccagg cgcgcaacca gaacgacatc
     3361 gacaagctgc gcctgttcca gcaaatgggc gtcgcgcaac cggccgacgt ggagctcgta
     3421 acgacgttca gcgtgtcgga ttcacttccg ccgctgccgg atctgctggc gatggcgaag
     3481 cggcagaacc caggcatcgt cgcactgcgc tcgcgcgagg accttgccaa tctcacagtc
     3541 aagagcgagc gcaccgagta cacgccgacg ctcacgctgt ccactggaat cggcggttac
     3601 acctatcagt atcgcgatcc gaatttcctc gtgaatcagg cggaggcgtc cactcaatcc
     3661 gcgcggtcgt cctgcgtggc gacgcaggaa gtacggcagg cggttggatt gcccaacacg
     3721 ctttcgcagt gcgccaacct cgtgttcaca ccagcgatgg cgaacaatct gcgtgcgcag
     3781 aactcgcagt ttccgttctc gttcacaccg tctccgcgca gcatctctgc gcagatatcg
     3841 cttccaatat tcgacggatt tgcgcgtgag cagcgcgtgc agcaagccgt cgttacacgc
     3901 gagaacgcac gctacaatgt gcgcgctcgc gagctggcac tgcaggctga cgtaagtgcc
     3961 gcgtacctct cgctccagac cgcgaagcag acggtcgcgc tccaggagca gaactccgcg
     4021 aaggccaagc aggagcttca gttcgttcag gaccagtacg cggtcggcct cgcgacattc
     4081 gttgatctca cgacttcccg cgctgcgtat gcgcaggcgg agaacgaccg gatcaatgcg
     4141 atctacaact accacaaggc agtcgccgcg ctggagagcg cggttggccg gcctctacgt
     4201 taacggacat ctcaatgcag aaacgaacca agtcaattgt cgcggtcgca gcgctggccg
     4261 ccgtcgtact ggttggagtc atcgcagcca ccaagagccg cagcaaggca gtggacgtga
     4321 agatcgaggc ggtcggcaca cgcgacctcg ttgcttcggt cactgctagc ggccaggtcg
     4381 cttcgcacac gaaagtggat gtcgcgtcag acgtgtcggg ccgcatcacg aggctcgctg
     4441 tcaaggaagg cgacatggtg aaaaagggac agttcctcct cgagatcgat ccgtcgcagt
     4501 atcaggcagc cgtcggccgc aacgtggctg cggtggcgag tagccgagca caggtcgagc
     4561 aggccaaggc gacgctggct caggcacaga gcacgtacca gcgcacagcc gatctgcaga
     4621 agcgcaatcc caagctggtg tccgccgatc aggtggacca gttgctcacc gcggtcaagg
     4681 tcaaccaggc tctggtggac aacgcgacgc acggggtagc ccaggcggag gcggcgctgc
     4741 gcgatgcgca gagctcgctc gacaagacca ccatcgtgtc accgatcgac gggcaggtta
     4801 cgcgtctcaa cgtcgagcag ggtgaaacgg cgatccaggg cacgctcaac aaggacgccg
     4861 ctacgctcct cacggtgagc gacatgaaca atctggaaac caaggtcaag gtgaacgaaa
     4921 ccgacgttgc ccacgtgaag gtaggcgatt cggccatcgt ccagatcgac gcgtttccag
     4981 acacgacgtt ccgcggcaag gtgacggaga tctcgaacag ctcgctcacc gccgcgacga
     5041 cgacgggcaa tggcagcagc caggccgacc aggctgtgga ctactacgtc accgtacagc
     5101 tgctcaatcc gccagcccag acgcgcccgg acttctcggc gacagccaag atcatcaccg
     5161 acaccaggcc ccatgcgctg gcgatcccga tcattgccct cacgattcgt gagaacgggc
     5221 ctgtcacgac cggtggcgat tccgcagcgg cagtcggcaa gactcccgtc aaggaagtcg
     5281 gcaaaaagga cgcagatggg gtattcgttg tgggcgcgga caacaaggtc accttccggc
     5341 ccgtaaaggt aggtatcgcg ggggagcagt acttcgaggt cctgagtggc ctcaagccgg
     5401 gcgacaagat cgtatccggc acgtaccagg ctatccgcga tctaaaggac ggcactgtcg
     5461 tgcgcgcggc caagcccgcg aagatgggcg actcgacgaa atcgtcatga acaatgaatt
     5521 agaagaagca ccgctcagca ccaccgcgga acgcagagct gtcacgtcga tatccggcgt
     5581 gacgccggga caggaatggg cgatag
//
LOCUS       DATIMD010000039         4776 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_880223, whole genome shotgun sequence.
ACCESSION   DATIMD010000039 DATIMD010000000
VERSION     DATIMD010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4776
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_880223"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..575)
                     /locus_tag="VLI40_00950"
     CDS             complement(<1..575)
                     /locus_tag="VLI40_00950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95764.1"
                     /translation="MTDVATAQTPVPAAHGGPSAGPPVGTARPDFQIVPLKGLPIVAV
                     IFIGLIIAIAANKLWPLVFLHVAFGAAWTIVDLFMGFVIGPTMGKLPPPARIEVATRL
                     MPKMVLIMPTVVTVTLAAGWQLGVLMGTVNSSYYNHGWIVASYIVVGFMAVIALGLLS
                     PANIAVLTELKKPKPNPAIIQKLMKRFIFAAG"
     gene            704..1261
                     /locus_tag="VLI40_00955"
     CDS             704..1261
                     /locus_tag="VLI40_00955"
                     /inference="COORDINATES: protein motif:HMM:NF019614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HSU95765.1"
                     /translation="MTRYVAFLRGMNLGKRRLEMSRLKSLFEELGYSDVATFIASGNV
                     IFSASERVTKKLESRIAAHLERSLGYGVDTFVRTLDEVAAIANARPFPEDGNEGITVH
                     VGFLQEPLSGATARALAAVRTSDDEFLVKAREYYWLCRIRTPDSKVWTSPEVRALKLP
                     TSTMRNMSSIRKLVAKHAVPDKRSQ"
     gene            complement(1270..1803)
                     /locus_tag="VLI40_00960"
     CDS             complement(1270..1803)
                     /locus_tag="VLI40_00960"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008752 - FMN reductase (NAD(P)H) activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0052873 - FMN reductase (NADPH) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HSU95766.1"
                     /translation="MYILAISGSLRTGASNTTVLQAAALLAPPGVTITLYDGLGALPH
                     FNPDLDSQDGDQLPAIVADLREQIGRADGVLISCPEYAHGIPGSFKNLLDWLVGSTEF
                     PGKPVALLNTSPMSVHAPAQLAEILTTMNARLIREASVTVQPRSRGSSAGDIATDPEV
                     SVTLRNAIVALIDAAHE"
     gene            1903..3081
                     /locus_tag="VLI40_00965"
     CDS             1903..3081
                     /locus_tag="VLI40_00965"
                     /inference="COORDINATES: protein motif:HMM:NF019932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSU95767.1"
                     /translation="MSRVLGGLAWSAVVALCVTPNIVSAQDALANTFRPLLGTAYRAM
                     VRGDTAALGALLADDLVWIIGPNGSEMTKGQLLSASAQSHPPAPRFVVDSVRAKRFGD
                     VATVEYRRTDHRPMGDGEFVARWRALDVFTMHGGRWLLERHTQVWLVSPVTPVALDST
                     SMDAFVGRYQLRPGYVDNVHWEGKVLVATASGQSAGARLVPVATNVFSPDGVGALISF
                     ERDASGRVLGYVQGYPDGSVIHAPKLGAAQSDSTSLALKVQREIEPLLAEMMEAANAH
                     DTDRFMAAYLRDPSFVFVINGTVMNGWDAVRAQQLKWWNNGKSDVVYSYVGKPEFTVL
                     SSDAAVVTERMSARRTLANGQTTTGELAVTMAMQKRPEGWRAVQVHESSVPPATPPAK
                     "
     gene            3078..3776
                     /locus_tag="VLI40_00970"
     CDS             3078..3776
                     /locus_tag="VLI40_00970"
                     /inference="COORDINATES: protein motif:HMM:NF014015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95768.1"
                     /translation="MTPEPVVLSWSGGKDSSLALAALRADPRYEVVALQTSITRGYDR
                     VSIHGVRRALVEAQAAAAGLPLIEVTLEQQSSNDAYEAAFKESLGRVRAEYPEVRRIA
                     FGDLFLADVREYRERLVAAAGFGALFPLWGRDTRVLAQEFIAAGFRAHLVCVDTTQLS
                     AEFAGREFNAALIADLAPSVDPCGERGEFHTFVSEGPIFTEAIGVTRGESVLRDNRFM
                     FCDLLPDAGSVNAP"
     gene            3812..4438
                     /locus_tag="VLI40_00975"
     CDS             3812..4438
                     /locus_tag="VLI40_00975"
                     /inference="COORDINATES: protein motif:HMM:NF012696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HSU95769.1"
                     /translation="MMSAREALDRLRNGNRDFVARMRGGDVALSDSRRAELPKDQNPF
                     AIILGCSDARVPAEIVFNQGLGDLFVIRVAGNIVAPSQVGSVEFAAARYDTALVVVLG
                     HTQCGGILATLEALQQPSASLSPGLKSIVDRVRPSVEPLFKTNLRNDLDSLVRQAVRT
                     NVGVSVNHLRHASALIEQLIQEGKLAVVGAEYSLETGAVDFFDTAGAE"
     gene            4501..>4776
                     /locus_tag="VLI40_00980"
     CDS             4501..>4776
                     /locus_tag="VLI40_00980"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSU95770.1"
                     /translation="MASATHSTRRSDDTRAKILNAAFTEFYRNGFQGGSLGRIVEAAE
                     VTKGALFHHFASKQELGYAVVDEVIGSLLEQRWLHPLTKSDDPIAEIQ"
BASE COUNT          939 a         1308 c         1600 g          929 t
ORIGIN      
        1 ccggcggcga agatgaagcg cttcatgagc ttctggataa ttgccggatt cggctttggc
       61 ttcttgagct cggtgagtac ggcgatgttg gctggtgaga gaagaccgag cgcaatgacc
      121 gccatgaatc cgacgacgat gtagctggcg acgatccagc cgtggttgta gtacgagctg
      181 ttgaccgtac ccatcagcac gcctagctgc cagccggctg cgagtgtgac tgtcacgacg
      241 gtcggcatga tcagcaccat cttgggcatc agtctcgtgg cgacttcgat tcgcgctgga
      301 ggtggaagtt ttcccatcgt cgggccgatc acgaatccca tgaagagatc gacgatggtc
      361 caggcggcac cgaatgctac gtgaagaaag acgagcggcc agagcttgtt ggccgcgatt
      421 gcgatgatga ggccgatgaa tatcaccgcg actattggaa gtcccttgag cgggacgatc
      481 tgaaaatcgg ggcgggcggt gccaacaggt ggcccggcgg atggcccgcc gtgcgcggct
      541 ggcacaggcg tttgtgcagt tgcgacgtca gtcattttat gcgctctcca aaccctaaat
      601 tgctgcgatc cggatggcga cgccagatta gtcgcgtcgc ccgccaataa acagatgaag
      661 tctgatagtt tttggcggct gggagcgcgc taaccgacac gacatgaccc gatacgtcgc
      721 atttctccgc gggatgaacc tgggcaagcg tcggctcgaa atgagccggc tcaagtcgct
      781 gttcgaggaa ctgggctaca gcgatgtggc cacgttcatc gcgagcggca acgtgatctt
      841 ctcggcgagc gagcgagtca cgaaaaagct ggagtcacgc atcgcggcgc atctcgagcg
      901 ctcacttggc tacggcgtcg atacgttcgt gcgaacactg gacgaagtag cggcaatcgc
      961 gaacgccagg ccattcccgg aggatgggaa cgaaggcatt accgttcacg tcggtttcct
     1021 gcaggagccg ttgagcggtg cgacggcgag agctctggcc gcggtgcgga catcggacga
     1081 cgaatttctg gtgaaggcga gagaatacta ctggctgtgc aggatcagaa cgccggactc
     1141 caaggtatgg acatctccag aagtgcgagc gctcaaatta ccgacgtcga cgatgcgcaa
     1201 catgtcgagc attcggaaat tggtggcgaa gcatgctgtc cctgacaaga gatcacagta
     1261 gatctgactt cactcgtgcg ccgcatcgat gagtgctacg attgcgttgc gcagcgtgac
     1321 cgatacttcg ggatcagttg caatgtctcc ggcgctgcta ccgcggctgc gtggctgcac
     1381 ggtaacgctg gcctcgcgga tcagtcgtgc gttcatcgta gtgagaattt cagcgagctg
     1441 agccggagcg tgcaccgaca tcggtgaggt gttgagcagc gcgaccggct tgcccgggaa
     1501 ttccgtgctg ccgaccagcc agtcgagcag gttcttgaat gatccgggaa ttccgtgtgc
     1561 gtattcggga caggagatga gtacgccatc agcgcggcca atctgctccc tgagatcggc
     1621 gacgatcgcc ggaagctggt ctccgtcctg tgaatccaga tcagggttga aatgcggaag
     1681 tgcgcccagt ccgtcataga gcgtgatcgt aacgccggga ggcgcgagaa gcgcggcggc
     1741 ctgcaggacg gttgtgttgg acgcgcccgt acggaggctg ccagatatgg cgaggatgta
     1801 catgagtcaa tgggtccgta atcacgagcg acagcgcggt gcgatctccg ttgtaagtta
     1861 aacaggtcgc tacgtagcac gtttcccgaa ccggatcggc ggatgtctcg tgtactcgga
     1921 ggtctggcat ggagtgcggt tgtcgcactg tgtgtgacgc ccaatatcgt gagcgcacag
     1981 gacgcgctcg ccaacacgtt ccgcccgctg cttggtactg catatcgcgc gatggtgcga
     2041 ggtgacaccg cagcactggg tgcactgctg gcagatgatc ttgtctggat catcgggccg
     2101 aacggcagcg agatgacaaa gggccaattg ctatccgcct cagcacaatc tcatcctccc
     2161 gcacctcggt tcgtcgtcga cagcgtacgc gccaagcgct tcggcgatgt tgcgactgtc
     2221 gagtaccgtc gcaccgatca ccgaccgatg ggcgacggag agtttgtagc aagatggaga
     2281 gcactggacg tcttcacgat gcacggggga cggtggctgc tggagcggca cacgcaggtg
     2341 tggctcgtat ctcccgtcac gccggtagca ctcgactcga cgtcgatgga cgctttcgta
     2401 ggccgctatc agctccggcc tggatacgtc gacaatgtgc actgggaagg gaaggttctt
     2461 gtcgcaactg catcgggaca gagcgcgggt gcgcgactgg tgccggtcgc caccaacgtg
     2521 ttcagcccgg atggtgtcgg ggcactcatc tcattcgagc gggacgcaag cggacgtgtg
     2581 ctcggatacg tgcagggata ccctgacggg agcgtgattc acgcgcctaa actcggtgct
     2641 gcacagagtg attcgacgtc gctcgcgctg aaagtgcaac gggagatcga gccgttgctc
     2701 gccgagatga tggaggcggc gaacgcgcac gacaccgatc gcttcatggc agcctacttg
     2761 cgcgatccgt cgttcgtctt cgtgatcaac ggcaccgtga tgaacggctg ggacgcggtg
     2821 cgcgcgcagc agctcaagtg gtggaacaat ggaaaatcgg acgtcgtgta cagctacgtc
     2881 ggaaagccgg agttcaccgt gttgagctcc gatgccgcgg tcgtaaccga gcggatgagt
     2941 gcgcgcagga ctctggcgaa tggccagacc acaaccggcg agcttgccgt cacgatggcg
     3001 atgcagaaac gtccggaagg atggcgcgca gtgcaggtac atgaatcgtc ggtaccacct
     3061 gcgacacctc cggcgaaatg actcccgagc ctgtcgtact gagctggagc ggcggcaagg
     3121 acagcagtct cgcgctcgcc gcgttgcgtg ccgatccgcg ctatgaggtg gtggcgctcc
     3181 agacgagcat aacacgcggc tacgatcgag tcagtatcca cggcgttcgg cgcgcgctgg
     3241 tggaagcgca ggcggctgcc gcgggattgc cgttgatcga ggtcacactg gagcagcaat
     3301 cgtcgaatga tgcgtacgag gccgcgttca aggagtcgct cggacgtgtg cgagcggagt
     3361 atccggaagt gcgacggatt gcgttcggcg acctctttct cgccgacgtt cgcgagtatc
     3421 gcgagcggct cgtcgctgct gccggcttcg gtgcactgtt tccgctatgg gggcgcgaca
     3481 cgcgtgtgct ggcccaggag ttcatcgccg cgggatttcg cgcgcatctc gtctgtgtgg
     3541 atacgacgca actatcggct gaattcgcgg ggcgtgagtt caacgcggct ctgatcgcgg
     3601 acctcgcgcc gagtgtggat ccgtgtggtg agcggggcga gtttcacact ttcgtgtcgg
     3661 aagggcctat cttcactgaa gcaattggcg tgacgcgtgg tgaaagcgtg ctgcgggata
     3721 atcgcttcat gttctgcgat ctactgccgg acgctggctc cgtgaacgcg ccgtgattcg
     3781 ggaaccacga gcatgaggat atgaaacgca gatgatgtca gcacgtgaag cactggaccg
     3841 tctgaggaac ggaaatcggg attttgtcgc tcgcatgcgg ggcggtgacg ttgcgctcag
     3901 cgattcgcgc agagcggagc tgccgaagga tcagaatccg ttcgcgatca tactcggctg
     3961 ctccgacgcg agggtacccg ccgagatcgt gttcaatcag ggactcggcg acctctttgt
     4021 gattcgcgtt gcaggaaaca tcgttgcgcc atcacaggtg gggagtgtcg agtttgccgc
     4081 ggcgcggtac gacacggcgc tggtggtagt gctgggacac acgcagtgcg gcggtattct
     4141 ggcgacactg gaagcgctgc agcagccaag cgcgagtctg tcaccaggtc tcaagtcgat
     4201 tgtggatcgt gtacggccgt cggtcgagcc gctgttcaag accaatttgc ggaacgatct
     4261 ggattcgctg gtgcgccagg ccgtgcggac aaatgtcggc gtgtcggtaa atcatctgcg
     4321 gcatgcgtcg gcgctcatcg agcagctgat ccaggaaggc aagcttgcgg tggtgggagc
     4381 ggagtactcg ctcgagaccg gagcggtgga ctttttcgat acggccgggg cggagtagca
     4441 cggcgcgggc gtaagagggg tccttgacta acataccgac cagtcggtat gttagcgttc
     4501 atggctagcg cgacccattc aaccagacga tccgacgaca cccgcgcgaa gatcctcaat
     4561 gcggcgttca cggagttcta ccggaacgga ttccagggtg ggagtctggg caggatcgtc
     4621 gaggccgccg aagtcaccaa gggggcgctc ttccaccact tcgccagcaa gcaggagctc
     4681 ggctacgctg ttgtcgacga ggtgatcggg tcgttgctcg aacagcgctg gctgcatccg
     4741 ctgacgaaat ccgacgatcc aatcgccgag atccag
//
LOCUS       DATIMD010000040         2559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_593345, whole genome shotgun sequence.
ACCESSION   DATIMD010000040 DATIMD010000000
VERSION     DATIMD010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_593345"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /gene="rho"
                     /locus_tag="VLI40_00985"
     CDS             <1..223
                     /gene="rho"
                     /locus_tag="VLI40_00985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="An RNA-DNA helicase that actively releases nascent
                     mRNAs from paused transcription complexes; Derived by
                     automated computational analysis using gene prediction
                     method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HSU95771.1"
                     /translation="KLDRSLAEKRIFPAIDIGISGTRREDKLFRPDQLDHVYTLRRGL
                     QQMPSSSAMEWLIKRIAATPNNDALLSGL"
     gene            323..>2559
                     /locus_tag="VLI40_00990"
     CDS             323..>2559
                     /locus_tag="VLI40_00990"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HSU95772.1"
                     /translation="MVSLFLRRSLRIAAVTVASLGFATAPLRGQSAATPTVGNPEITE
                     LTLTGVHAVDPEELRLNIATDESHCASVLLRPVCLFSKSPTFYKRFTLNRAELARDML
                     RVMVFYFRRGYRDAQVDTSVVRTGRRTVHVTIAVNEGKPTIVSGIRIVQDTNVLRPRA
                     LNRALVLQQGRPYSLIELDSTIAALDSRLWNRGYSDAVIDTTVTLDTAAKTADITIKV
                     TPRWRARVASITVKGNKGVTARTIKKSLSFKPGGLYKQSDVLASQRALYESNLFRRAA
                     IEVPTTDDSLKHVLIDVQEAPPHDARYSAGFNTIDFVQVEGHYADYNWMSGAKRLTID
                     AAVGNLFAHTLNGNGIFYDVGKTVVGGSESQYLAPTYTASADIRYPWFGSPNNEAAFG
                     IFAHRRSSPGIYVDKGYGLSATFTRTLTPRGPLSLNYRFEETTVQAGDVYFCVNYGVC
                     DAATLIALEKKQRLSPLALSFSLDKTDNPFEPHRGFRTQFDMEHASSYTASDFRYNRG
                     SGDFAAFLPMTRRSVLAGHVRVGIIGALASTTEAVGVGSGALGATAILHPRKRFYAGG
                     SQSVRGYPEGQLGPRVLTVPAAKLLANDSLNPECRAATITKCNPNAGPFRDRDFQPRP
                     LGGNRLIEGSIEVRFPLFASLVGATFVDGAYLAQNTSPGLPRSKAAITPGIGVRYLSP
                     VGPVRVDVGLDPETSEKLPVVTEDVASGGKGLVTLDQSRTYSPTHGSGGLNSLLARLT
                     LHLSIG"
BASE COUNT          513 a          787 c          787 g          472 t
ORIGIN      
        1 caagctggat cggagccttg cagagaagcg aatcttcccg gccatcgaca tcgggatcag
       61 cggcacgcgc cgcgaggaca agctgttccg tcctgaccag ctcgatcacg tttatacgct
      121 ccgccgcggg ttgcagcaga tgccgtccag ctcggcgatg gagtggctga taaaacggat
      181 cgcggcgacg ccgaacaacg acgcgttgct ctccggcctc taagaccggc aactgcgccc
      241 gtaagacagt cccggaatgc ggagccatgg ccgccgggag aatatgggtg tcccgcggcc
      301 cgggccttgc tctctcgcgg gcatggtttc tctatttctg cggcgatcgc tccggatcgc
      361 cgcggtaaca gttgcatcgc ttggcttcgc gactgctcct ctccgggggc agtctgcagc
      421 gacacccaca gtcggcaatc ctgaaatcac cgagctgacg ctcacgggcg tacacgccgt
      481 ggatccggag gagttgcgac tcaatattgc aactgacgag tcacactgcg catcagtgct
      541 gctgagacct gtttgcctgt tcagcaagtc gccgaccttc tacaagcgct ttacgctcaa
      601 ccgggcggag ctagcgcgcg atatgctgcg agtgatggtg ttctatttca ggcgtgggta
      661 tcgcgatgcg caggtcgaca cgagcgtggt caggactggc cggcgtacgg tacacgtcac
      721 gatcgcggta aacgagggaa agccgacgat cgtgtccggg atccgcatcg ttcaggatac
      781 caatgtgcta cgcccgaggg cgctgaatcg tgctctcgtc ctgcagcaag ggcggccgta
      841 cagcctgatc gaactggatt cgaccattgc ggcgctggat tcgcggctgt ggaatcgcgg
      901 ctactcggac gccgtgatcg atacaacggt cacactcgac accgcggcga agacagccga
      961 tatcaccatc aaggtgactc cgcgatggcg cgcgcgtgta gcaagcatca ccgtcaaggg
     1021 aaacaagggc gtcacggctc gcacgatcaa gaagtcactg tcgttcaagc cgggcggatt
     1081 gtacaagcag tcggatgtac tggcgagcca gcgcgcgcta tatgagtcga acctctttcg
     1141 gcgcgcagcg atcgaagtgc cgacaacgga cgattcgctc aagcacgtgc tcatcgacgt
     1201 acaggaagca ccaccacacg acgcgcgtta cagcgctggc ttcaacacaa tcgactttgt
     1261 acaggtcgag ggtcattacg ccgattacaa ctggatgagc ggtgcaaagc ggctgaccat
     1321 cgatgcggcc gtgggcaacc tgttcgcgca tacgttgaac gggaacggca tattctacga
     1381 cgtcggcaag acagtcgtgg gaggctccga gtcgcagtat ctggctccga cgtacacggc
     1441 cagcgccgat atccgatatc cctggttcgg ctcgccgaac aacgaggccg cgttcggaat
     1501 attcgcgcat cgccggagct cgcccggtat ctacgtcgac aagggctatg gcctgagcgc
     1561 tacgttcaca cgcacgctga cgccgcgcgg cccgttgagc ctgaactacc ggttcgaaga
     1621 gacgacggta caggcgggcg acgtgtattt ctgcgtcaat tacggtgtat gcgacgcggc
     1681 gacactgatc gcgctcgaaa aaaagcaacg gctctcgcca cttgcactga gcttctcgct
     1741 ggacaagacc gacaatccat tcgagcctca ccgcggcttc cgaacgcagt tcgatatgga
     1801 gcacgcgtcg tcatacacgg cctccgactt caggtacaat cgcggttccg gtgacttcgc
     1861 ggcatttctt cccatgacac ggcgctctgt actcgccggc cacgtgagag ttggaatcat
     1921 cggcgcgctg gcgagcacca cggaagctgt tggagtcggg agcggcgcac tcggcgcaac
     1981 ggccatcctg catccgcgca agagattcta cgctggtggc tctcaatcgg tgcgcgggta
     2041 cccggaagga cagctgggcc cgcgcgtcct gaccgtgccc gccgcgaagc tcctggcaaa
     2101 tgattccctc aatccggaat gcagagccgc gacgatcacg aagtgcaatc cgaacgctgg
     2161 tccattccgc gatcgcgatt tccagccgcg ccctcttggt ggaaaccgcc tgatcgaggg
     2221 gagtatcgag gtacgctttc cgctgtttgc atcgctcgtc ggagcaacgt tcgtcgacgg
     2281 ggcatatctc gcgcagaata cgagcccggg gttgcccagg agcaaggccg cgatcactcc
     2341 cggcatcggc gtgcgatatc tctcgccggt cggaccggtg cgcgtcgatg ttggactcga
     2401 tccggagacg agcgaaaaac ttcccgtggt caccgaagac gtcgcgagtg gcgggaaagg
     2461 actcgtcaca ctcgatcaat cgcgcacgta ctcgccgacg cacggaagtg gcggcctgaa
     2521 ctcgctgctt gcgcggctca cgctgcatct gtcgatcgg
//
LOCUS       DATIMD010000041         3887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2903472, whole genome shotgun sequence.
ACCESSION   DATIMD010000041 DATIMD010000000
VERSION     DATIMD010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3887
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2903472"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..801
                     /locus_tag="VLI40_00995"
     CDS             <1..801
                     /locus_tag="VLI40_00995"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HSU95773.1"
                     /translation="EYHLISDHDALYSRTREHFRADLEDVYRRGYRPVTLAQVLDKNF
                     TDVTVGMSPVVIVFDDASPGQFSYIEKNGKLEIDPTSGMGIWLDFARTHPGWKNRAVF
                     CMLNGGAAGHNFFGDNVKFGGQKKEWRFPKVRWLADNGFELCDHTVWHAMLNKYSDAV
                     VQEQIARNAMGIDSAVPGYKIRSMALPYGIWPRNRQLAWQGSWRDPKTGKVHSYHFEA
                     VMEVSGGPTRSPYDPAFDPHHITRVQAVGNNIKNDLDQLDRTNTRFVR"
     gene            complement(872..1270)
                     /locus_tag="VLI40_01000"
     CDS             complement(872..1270)
                     /locus_tag="VLI40_01000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95774.1"
                     /translation="MAENPGDAQALVRLANGYWLEGRGPDVVGEIADRARKLDPASRG
                     AWHMWALAESNPRERTERWRQVTVQFPDDDLARANLADNAAALAGAEHDYMALDLAID
                     TYEQLLANATEPDQREALEKAIGILRKWKF"
     gene            1608..3269
                     /gene="rho"
                     /locus_tag="VLI40_01005"
     CDS             1608..3269
                     /gene="rho"
                     /locus_tag="VLI40_01005"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF006886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HSU95775.1"
                     /translation="MTERRRSTRRGRGQSPDDATSTDAISDANPYLDSTPQSPSAPAV
                     PPEPRPEPRPEPRSRAEPSPTVAPAVSLVPRDNGSEGPSSPPDSAAGGGSGPGDGGPA
                     GDDGGDRAGQGRGRFRRFRHRNRNAQGGNQQQQQQQQPQQQHQRQNQNNNQQFSGGRR
                     NNRRNRPQAEAAPRGPVGPIIVEGETSGLFDPQRDAGYLRSASHSYLAEANDPFVPAQ
                     LVRQAGLRRGDLVTVTVGRDQRGRVTAAELLTVNGGDPEAALRRPEFASLVASYPDRK
                     LSLETGRPAKAGPELTRRAIDLIAPIGYGQRALIVAPARAGKTMLLQAVIEGIAINQP
                     DVQLFVLLVDERPEEVSDMISIGHGEVVASSFDMPAQRHADVAEMTLERARRLVELGQ
                     DVVIVLDSITRLARAYNTIERGTGRTMSGGLDSSAMAKPKAFFGSARSVAPENGGGSL
                     TIIATALVETGSRMDDVIFEEFKGTGNCEIKLDRSLAEKRIFPAIDIGISGTRREDKL
                     FRPDQLDHVYTLRRGLQQMPSSSAMEWLIKRIAATPNNDALLSGL"
     gene            3369..>3887
                     /locus_tag="VLI40_01010"
     CDS             3369..>3887
                     /locus_tag="VLI40_01010"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HSU95776.1"
                     /translation="MVPLFLRRSLRIAAVTVASLGFATAPLRGQSAATPAAGNPEITE
                     LTLTGVHAVDPEELRLNIATDESHCASVLLRPVCLFSKSPTFYKRFTLNRAELARDML
                     RVMVFYFRRGYRDAQVDTSVVRTGRHEVHVTIAVNEGKPTIVSGIRIVQDTNVLRPRA
                     LNRALVLQQGRPY"
BASE COUNT          782 a         1191 c         1219 g          695 t
ORIGIN      
        1 gaatatcatc tgatcagcga tcacgacgct ctatacagca gaactcgcga gcattttcgg
       61 gcagatctcg aggatgttta tcgacgcgga taccggccgg tgacgttggc gcaggtgctg
      121 gacaagaatt tcactgatgt cacggtggga atgtcgcctg tggtgatcgt cttcgacgat
      181 gcatcgccag ggcagttcag ctacatcgag aagaacggca agctggagat cgacccgacc
      241 agcgggatgg ggatctggct cgatttcgcc agaacacatc cgggatggaa gaaccgggcg
      301 gtgttctgca tgttgaatgg cggtgccgcg ggtcacaact ttttcggcga taacgtgaaa
      361 ttcggcggac agaaaaagga gtggcggttc ccgaaggtga ggtggctcgc cgataatggc
      421 ttcgaactgt gtgatcacac agtgtggcac gcaatgttga acaagtactc cgatgcagtg
      481 gtccaggaac agatcgcgcg caacgcaatg ggcatcgatt cagctgttcc ggggtacaag
      541 atcagatcga tggcattgcc atacggcatc tggcccagga atcgccagct cgcatggcag
      601 ggctcgtggc gggatcccaa gaccggcaaa gttcacagct accacttcga agctgtaatg
      661 gaagtttccg gaggcccgac gcgcagcccg tacgatccgg ctttcgaccc gcatcacatc
      721 acgcgcgtcc aggctgtcgg taacaacatc aagaacgatc tggaccagtt ggacagaacc
      781 aatacgcgct tcgtgcgcta gcgtcggata gcagcagcta tcggcgtccg tggtcgtaca
      841 ttcacgacca cggacgccct gaatcacgcg atcagaattt ccatttccgc aggatcccaa
      901 ttgctttttc aagcgcctcg cgctgatcgg gctccgtggc gttggcgagc agctgttcgt
      961 atgtatctat tgcgagatcg agcgccatgt aatcgtgctc ggcgccggcg agcgccgctg
     1021 cgttgtcggc cagattggca cgggcgagat cgtcgtccgg aaactggacg gtgacctggc
     1081 gccaacgttc ggtccgctcg cgcggattcg attccgcgag ggcccacatg tgccatgcac
     1141 cgcggctcgc gggatcgagt tttcgtgcgc gatcggcaat ctcgccgacc acgtccggcc
     1201 cccttccctc gagccaatat ccgttggcga gccggaccag agcctgggcg tcaccggggt
     1261 tttctgccac agattgctcc aaatccgcaa ccgtggggta tgatagatcg tccatttacc
     1321 gaaatgtatc cctctggaca agagtcgcgg ggggtgctag cgtaaagggg tagtgcgaac
     1381 gcagttcgaa cgtagtgcga gcgtagtgag aacaaggcgt gcgtgatcgc gcgcagattg
     1441 aaggacatcg tccccgggaa cgccgcgtga gttggccccg cgctccccga gacacttccg
     1501 aatcaacacg acaaatcgag tgaccgcgac gatggcgccc tgcgcccgtt gcgtaatgcg
     1561 cttgcggcga gtgtcgccgg cgcctctgta cccgaaaaat cctttacatg actgaacgcc
     1621 gacgttcaac ccgtcgcggt cgtgggcaga gccccgacga tgcaacgtcc accgatgcga
     1681 tttcggatgc gaatccgtat ctggactcga ctccacaatc cccatcggcc cctgctgttc
     1741 caccggaacc gcgtcccgag ccacgtcccg agccgcgatc ccgtgccgag ccgagcccga
     1801 cggtagcgcc tgcggtatct ctggttccgc gcgataacgg gagcgaaggg ccatcctcgc
     1861 ctcctgattc agctgccgga ggcggcagtg gccccggcga cggaggaccg gccggtgacg
     1921 acggaggcga tcgcgctgga cagggacgcg gacggtttcg ccgcttccgg caccgcaatc
     1981 gaaacgcgca gggtggcaat caacagcaac aacagcaaca acagccgcaa cagcaacatc
     2041 agcggcagaa tcagaataac aaccagcagt tcagcggcgg acgccgcaac aatcgccgca
     2101 atcgcccgca ggcagaagcc gcaccacgcg ggccggttgg accgatcatc gtcgaaggcg
     2161 agacgtcagg cctcttcgat ccgcagcgcg acgcgggcta tctccgcagc gcatcacaca
     2221 gctatctggc cgaagcgaac gatccgttcg taccggcaca gctggttcgt caggcgggac
     2281 ttcgccgcgg cgatctcgtc accgtcacgg tagggcgaga ccagcgtggt cgcgtgactg
     2341 ctgccgaatt gctcaccgtc aatggtggcg atcccgaggc ggcgttacgc cggccggaat
     2401 tcgcctcgct cgttgcgtcg tatccggatc gcaagctatc gctcgagacg ggccggcctg
     2461 ccaaggcggg acccgagctg acgcggcggg caatcgatct catcgctccg atcgggtacg
     2521 gacagcgtgc cctgatcgtc gctccggcgc gcgcaggcaa gacgatgttg ttgcaggcgg
     2581 tgatcgaggg aatcgccatc aaccagccgg acgtgcagct tttcgtcctg ctcgtggacg
     2641 agcgccccga ggaagtgagc gacatgatct caataggcca cggcgaggtc gtagcgtcca
     2701 gcttcgacat gccggctcag cgccacgccg acgtcgccga aatgacgctc gagcgggccc
     2761 ggagactggt cgagctcggc caggatgtcg tcatagttct cgactccatc acgcgtcttg
     2821 cgcgtgcgta caacacgatc gagcgcggca ccggccgcac catgagcggt ggtctcgact
     2881 catcggcgat ggcgaagcca aaggcgttct ttggatcggc gcgctcagta gcgcctgaga
     2941 atggcggtgg atcgctcacg atcatcgcga cggcactcgt cgagacaggc tctcggatgg
     3001 acgacgtgat cttcgaggag ttcaagggca ccggcaactg cgagatcaag ctggatcgga
     3061 gccttgcaga gaagcgaatc ttcccggcca tcgacatcgg gatcagcggc acgcgccgcg
     3121 aggacaagct gttccgtcct gaccagctcg atcacgttta tacactccgc cgggggttgc
     3181 agcagatgcc gtccagctcg gcgatggagt ggctgataaa acggatcgcg gcgacgccga
     3241 acaacgacgc gttgctctcc ggcctctaat accggcaact gcgcctgtaa gaccatcccg
     3301 gaatgcggag ccatggccgt cgggagaata tgggcgtccc acggcccgag ccttgctctc
     3361 tcgcgggcat ggttcctcta tttctgcggc gatcgctccg gatcgccgcg gtaacagtcg
     3421 catcgcttgg cttcgcgact gctcctctcc gggggcagtc cgcagcaaca cccgcagccg
     3481 gcaatcccga aatcaccgag ctgacgctca cgggcgtaca cgccgtggat ccggaggagc
     3541 tgcgactcaa cattgcaact gacgagtcgc actgcgcatc agtgctgctg agacccgttt
     3601 gcctgttcag caagtcgccg accttctaca agcgctttac gctcaaccgg gcggagctag
     3661 cgcgcgatat gctgcgagtg atggtgttct atttcagacg cgggtatcgc gatgcgcagg
     3721 tcgacacgag cgtggtgagg acaggccggc acgaggtgca cgtcacgatc gcggtaaacg
     3781 agggaaagcc gacgatcgtg tccgggatcc gcatcgttca ggataccaat gtgctacgcc
     3841 cgagggcgtt gaaccgtgct ctcgtcctgc agcaagggcg gccgtac
//
LOCUS       DATIMD010000042         2242 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2036843, whole genome shotgun sequence.
ACCESSION   DATIMD010000042 DATIMD010000000
VERSION     DATIMD010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2036843"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..593
                     /locus_tag="VLI40_01015"
     CDS             102..593
                     /locus_tag="VLI40_01015"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSU95777.1"
                     /translation="MTTSVTLRPARSGDIAGIVSLVNGYAAEAIMLYRSPESVSITLH
                     DFVVAVDSMGTVMACGALKEYSPSLAEVASVAVARDAHGLGLGTAIVAEVERLARKRG
                     VDELFALTLTPRFFESAGYMIADRALYPEKIRRDCLKCPRRIRCNEYCVARTVQEEMA
                     AAA"
     gene            900..1649
                     /locus_tag="VLI40_01020"
     CDS             900..1649
                     /locus_tag="VLI40_01020"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSU95778.1"
                     /translation="MTAPGTTAPSRADYGLDAPGVIRVMLVCGIVAIVLGIVADRFVF
                     SISALRHVAIGPSLLWIGWALVVGAGLMTASSRWGKLRARDRLLDRLALTGSETVLDV
                     GCGHGLLLIGAAKRLPRGRAIGVDLWSQVDQKSNSAAATMANARAEGVEDRVEVRDAD
                     MRALPLDDSSVDVVVSSLAIHNVTGDAERHKALREMVRVLRSGGRVGILDIAHVGDYA
                     KEFRAAGMSKVELHGISPWIYPPARVLTAVK"
     gene            complement(1693..>2242)
                     /locus_tag="VLI40_01025"
     CDS             complement(1693..>2242)
                     /locus_tag="VLI40_01025"
                     /inference="COORDINATES: protein motif:HMM:NF027650.4"
                     /note="Uup; in Escherichia coli this cytoplasmic protein
                     was shown to contain ATPase activity; mutations in this
                     gene affect RecA-independent excision of transposons and
                     affects Mu bacteriophage growth; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU95779.1"
                     /translation="RLFTRPFNMLVMDEPTNDLDIETLDLLEELLLEFNGTLLVVSHD
                     RAFLDNVVTSTLVFEGNGRVSEYAGGYTDWLRQRRMPERETPASSASSKPKRAAASTP
                     ASARKRRLTYKETSELASLPDEIDRREKEREQIYASLADSTFLRDGAAVAAAKSRLNE
                     LELEMTQLMGRWEELETIAGDM"
BASE COUNT          400 a          641 c          745 g          456 t
ORIGIN      
        1 ggcgaataca cgcttcgact gttgccaccg ctcgtcatga gccgtgacga catgagggac
       61 gggctcgaat cgctggaaga ggtgctgcga tgaatcacga ggtgacgacg tccgtcacgc
      121 tgcgcccggc gcgcagcggc gacatcgcgg gcattgtatc gctcgtgaac ggttatgcag
      181 cggaggcgat catgttgtac cggtcgccgg aatccgtgag catcacgctg catgatttcg
      241 tcgtcgcagt ggattccatg ggaaccgtga tggcgtgtgg cgcgctcaag gaatattcac
      301 catcgctcgc cgaggtcgcg tccgtcgcgg tggcgcgtga cgcgcacggg cttggacttg
      361 gaaccgccat tgtcgcggaa gtcgaacggc tcgcgcgcaa gcgcggggtc gacgagttgt
      421 tcgccctgac gcttacaccg cggttcttcg agagcgccgg ttacatgatt gctgaccgag
      481 cgctgtaccc ggaaaagatc aggcgcgatt gtctcaagtg tccgcgcagg atacgctgca
      541 acgaatactg tgtcgcgcgc acggttcagg aagagatggc ggcggcggcg tagccacgcc
      601 tggcaagcgt ctgtgtgccc gggtgtacac aggcgggcgc gccgggcgcc gagcggtggg
      661 cccgtacgga ggctaacgaa cgcacctact cgacgccggc actcgccatg gcgccaaaat
      721 cccgcgccgc tggcgttgtt cagatcccca caaacgcatt ttgtatgcat ccccatatag
      781 ttttgccgag tgggctgccg aataatcgtt tgtttaccaa gtggcggatt taatggcgct
      841 tgtcgtgcag agggcggggt tgggatgacg tttgatccca cgcctgaacg gagatccgta
      901 tgactgcacc gggcactacc gcgccatcac gcgccgatta tggtctggac gcgcccggcg
      961 taattcgcgt gatgctggtc tgcggcatcg tggcgatcgt gctcggaata gtggccgatc
     1021 ggttcgtatt ttccatctcc gcgctccgcc acgtagcgat cggcccgagc ctgctgtgga
     1081 tcgggtgggc cctggtcgtt ggcgccggct tgatgacggc gagcagcagg tggggaaagc
     1141 tgcgtgctcg cgacaggtta ctggaccggc tcgcgctcac gggttctgaa accgtgctcg
     1201 acgtgggttg tggacacggg cttctgctga ttggcgctgc caagcggctc ccgcgcggga
     1261 gagcgatcgg cgtggacctc tggtctcagg tggatcagaa gagcaactcc gcggctgcaa
     1321 cgatggcgaa cgctcgcgcg gagggagtgg aggacagggt cgaagtgcgc gacgccgaca
     1381 tgcgcgcact gccgttggat gattcgagcg tcgacgtcgt ggtatcgagt cttgcgattc
     1441 acaacgtgac gggagacgcc gagcgacata aggcacttcg cgagatggtg cgagtcctca
     1501 ggtccggcgg tcgagtggga attctcgaca tcgcgcacgt cggcgattac gcgaaggagt
     1561 ttcgcgcggc gggtatgagc aaggtggagc tgcacggaat ctcgccgtgg atatatccgc
     1621 ccgcgcgtgt gttgacggcg gtgaagtagc gattgacggc accggattct cagggatgtc
     1681 gtcattcccg ctttacatat cgcccgctat cgtctccagc tcttcccatc gtcccatcag
     1741 ctgagtcatc tcgagctcga gctcgttgag gcggctcttg gcggcagcga cagccgcacc
     1801 gtcgcgcaga aatgtcgaat ctgcaagcga cgcgtagatc tgctcacgct ccttctcacg
     1861 tctgtcgatt tcatcgggaa gcgatgcgag ctcactcgtt tccttgtagg tgaggcgacg
     1921 cttgcgcgcg gacgctggag tcgaggctgc agcgcgttta ggcttgctcg atgcggatga
     1981 tgccggtgtc tctcgctccg gcattcgtcg ctggcgcagc cagtcggtgt aaccaccagc
     2041 atactcactc acgcgaccgt tgccctcgaa cacgagcgtg ctcgtgacga cgttgtccag
     2101 aaacgctcga tcgtgactca caacgagcag cgttccattg aactcgagca gaagctcttc
     2161 cagaagatcg agtgtctcga tgtcgagatc gttggtcggc tcgtccatta cgagcatatt
     2221 gaacggtcgc gtaaagagac gt
//
LOCUS       DATIMD010000043         2610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3481142, whole genome shotgun sequence.
ACCESSION   DATIMD010000043 DATIMD010000000
VERSION     DATIMD010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2610
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3481142"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..820
                     /locus_tag="VLI40_01030"
     CDS             <1..820
                     /locus_tag="VLI40_01030"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSU95780.1"
                     /translation="PEDIDLRDAVSRGLIPGPRILTSITQINDRSLSPDSLRGIVRAL
                     AAQGADVIKLFASAGLGAGGAQTLSDEQLAAICGEAKARGLRSVVHAISAASVRAATL
                     AGCTQIEHGTFVTDAELQLMAEHGTIFDPQVCLVFQNYLDHRAEYGRSGFTEQSFDAL
                     AKAIPTATAMFKRALATKGLHIVFGTDAVALAHGRNADELFCRVRAGQSPMDAITSAT
                     SLTASALGLGDRIGAIAPGFDADLIAVRGDPSRDIETLRQIKFVMRAGVVYTGR"
     gene            complement(828..1430)
                     /locus_tag="VLI40_01035"
     CDS             complement(828..1430)
                     /locus_tag="VLI40_01035"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HSU95781.1"
                     /translation="MAFTLPPLPYAYDALEPHIDARTMEIHHTKHHQTYVNNLNTAVD
                     KTPELQGKSLEELMRGVNSVPEGVRAAVRNNGGGHWNHSLFWEVMGAGKGGEPTGKLA
                     DAIKSAFGDFSKFKEQFAAAGTGRFGSGWAWLINDGGKLSIASTPNQDNPLMEAKTAI
                     LGLDVWEHAYYLKYQNKRPDYIAAWWNVVNWDAVADRYGK"
     gene            complement(1445..2071)
                     /locus_tag="VLI40_01040"
     CDS             complement(1445..2071)
                     /locus_tag="VLI40_01040"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HSU95782.1"
                     /translation="MDTLLDWLHKIRDVRGIIAWGGYVGLTAIIFAETGLLVGFFLPG
                     DSLIVTAGLLAATTGVFNVYLLGLLLTVASILGNTVGYAIGKATGPRLFTREDSLLFN
                     KKHLYRAREFYDRHGGATVIIARFMPIVRTFVPVVAGMAQMGYRRYTIFNIIGGLGWI
                     WSMLFIGYFLGSYIPGVDQHIELVIVIVVAVSLLPGIIGWMRQRKQNA"
     gene            2113..>2610
                     /locus_tag="VLI40_01045"
     CDS             2113..>2610
                     /locus_tag="VLI40_01045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95783.1"
                     /translation="MRTGSSTGPTRESTGDAELHWPHLFEQALSLPRRRFEDSHRWWN
                     RVGVSKRGERLFDITRVVLIALFGAGWVYSIANAKTLVNAGDEVSPVSRARAAITSAL
                     PTGDGPTTAYLTDAALTGITDRILGSARGTSGKLKANIEPAPAPLTVDTLPPGATVQY
                     TRGGEV"
BASE COUNT          488 a          818 c          809 g          495 t
ORIGIN      
        1 tcctgaagac atcgatctgc gcgacgcagt gagtcggggg ctgattccgg gaccgcgcat
       61 tctcacgtcg atcacgcaga tcaacgaccg ctcactctcg cccgactcgc ttcgtggaat
      121 cgttcgcgcg ctcgccgcgc agggtgccga tgtcatcaag ctgtttgcat cagccggtct
      181 cggtgccggt ggagctcaga cgctctccga cgaacagctc gccgcaatct gcggcgaagc
      241 gaaagcgcga gggctccgca gcgtggtgca cgcgatcagc gccgcaagtg tgcgggccgc
      301 gacgctcgcc ggatgcacgc agatcgaaca cgggaccttc gtcaccgatg cggagcttca
      361 gctcatggct gaacatggga cgatcttcga tccgcaggtg tgcctggtgt ttcagaacta
      421 tctcgatcat cgcgccgagt acggacgctc gggcttcacg gagcaatcgt tcgacgcgct
      481 ggcgaaggcc attcccacgg ccaccgcgat gttcaagcgc gcactcgcga cgaaaggcct
      541 gcacattgtg ttcggaacgg acgccgtggc gctggcacac ggcagaaatg cggatgaact
      601 gttttgccgt gtccgcgcag ggcagtcgcc gatggacgcg atcacatcgg cgacctctct
      661 caccgcgtcc gcactgggac tcggcgatcg cattggcgcg atcgcaccag gcttcgacgc
      721 ggatctcatc gctgttcgcg gcgacccgtc tcgcgacatc gagaccttgc gccaaataaa
      781 gttcgtgatg cgggccggcg tcgtgtacac cggccggtag cgatcagcta cttgccgtat
      841 ctgtcggcga cggcgtccca gttcacgacg ttccaccacg ccgcgatgta gtcgggacgc
      901 ttgttctgat acttcagata gtaggcgtgc tcccagacat cgaggccgag gatagcggtc
      961 ttggcctcca tcaatgggtt gtcctgattc ggcgtgctcg cgatcgacag cttgccgccg
     1021 tcgttgatca gccaggccca tcccgatcca aatcggccgg tgcccgccgc cgcaaactgc
     1081 tccttgaact tgctgaagtc tccgaacgca ctcttgatcg cgtcggcgag tttgccggtt
     1141 ggctctccgc ctttgcccgc gcccatcact tcccagaaca gcgaatgatt ccagtggccg
     1201 ccgccgttgt tgcgcaccgc ggcgcgcaca ccttccggaa cgctgttcac gccgcgcatc
     1261 aactcctcca gcgactttcc ctgaagctcc ggcgtcttgt cgaccgccgt attcaggttg
     1321 ttcacataag tctgatgatg cttcgtgtga tggatctcca tcgtgcgcgc gtcgatgtgc
     1381 ggctccagcg cgtcgtaagc gtagggaagc ggcggtagcg tgaaggccat gagaatctcc
     1441 tgtgttacgc gttctgtttg cgttgtcgca tccatccaat gatgcccggc agcagcgaca
     1501 ccgcgaccac gatgacaatg acgagctcga tgtgctggtc aactccggga atgtagctac
     1561 ccaggaaata gccgatgaac agcatgctcc agatccaacc gaggccgccg atgatgttaa
     1621 agatcgtgta acggcgatat cccatctgag ccatcccggc gaccaccggg acgaaggtgc
     1681 gaacgatcgg catgaatcgc gcaatgatga cggttgcgcc cccgtgtcgg tcgtaaaact
     1741 cccgggctcg gtacagatgc ttcttgttga agagcaggga atcctctcgt gtaaagagcc
     1801 gcggccccgt cgctttgcct atggcgtagc ccacggtgtt tccgaggatc gacgcgaccg
     1861 tcagcagcag accgagcagg tagacgttga acacgcctgt ggtcgcggcg agaagcccgg
     1921 cggtcacgat cagcgaatcg cccggcagaa agaatccgac gagcagcccg gtctcggcga
     1981 agatgatggc cgtgagtcct acgtagccgc cccacgcgat gatcccgcgg acgtcccgga
     2041 ttttgtgaag ccagtcgagc aacgtgtcca ttcgtgttgg gatatggtgc gcgtgagcaa
     2101 tcaggcaggt cgatgaggac aggaagttcc acgggcccga ctcgggaatc aactggcgac
     2161 gcggagttgc attggccgca ccttttcgag caggcgctgt cgcttccgcg tcgacgcttc
     2221 gaggactcac accgctggtg gaatcgcgtc ggcgtctcca aacgcggcga gcggttgttc
     2281 gacatcaccc gcgttgtgct gatcgcgctc ttcggcgctg ggtgggtcta ctcgattgcg
     2341 aacgcgaaga ccttggtcaa cgccggcgat gaagtctcgc ctgtaagtcg agcgcgagcg
     2401 gcgatcacga gcgcgctgcc taccggagat gggccgacaa ccgcctatct cacggatgcc
     2461 gcgctgaccg gcatcaccga ccggatactc ggtagcgcgc gaggaacgag tgggaagctc
     2521 aaggcgaaca tcgagcctgc accagcgccg ctgacggtcg acacgttacc gcccggcgcg
     2581 acggtgcagt acacgcgagg cggcgaagtt
//
LOCUS       DATIMD010000044         2320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3192822, whole genome shotgun sequence.
ACCESSION   DATIMD010000044 DATIMD010000000
VERSION     DATIMD010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3192822"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..896
                     /locus_tag="VLI40_01050"
     CDS             <1..896
                     /locus_tag="VLI40_01050"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HSU95784.1"
                     /translation="TEAVTEYGVQSQYGLNTEYDPRAIVGDNYADPSQRSYGNTDVTG
                     PDAKHGTHVAGIIAAMPQDSVGIEGVASAALIMPVRAVPDGDERDKDIANAIRYAVDN
                     GARVINMSFGKPYSPFKAAVDAAVKYADAHGVLMVVAAGNDGASLDTASNFPTPEYTG
                     GGRAANWIEVGASSWRGGDTVAVSFSNYSHDKVDVFAPGEDILSSVQGGGYERLSGTS
                     MAAPVVTGLAALIMSYYPNLTPGQVRQIILDSATRYNRASLVPGSKSGETAPFASLSA
                     TGGIVNAYNALKMAQQRSSAH"
     gene            1072..1314
                     /locus_tag="VLI40_01055"
     CDS             1072..1314
                     /locus_tag="VLI40_01055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HSU95785.1"
                     /translation="MAKQKVAVTLDRQLLMEIDDLVASGAYPNRSQAIEAALAETLAR
                     RARTQLIRECARLDPAEERALAEEGLGAEGVEWPAY"
     gene            1299..1637
                     /locus_tag="VLI40_01060"
     CDS             1299..1637
                     /locus_tag="VLI40_01060"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HSU95786.1"
                     /translation="MAGILRGDIRWAELDPARGHEQSGQRPVLILSHDVFNERSGTVI
                     AVALTSQEPRAGFPLTLELGAANLPKRSWAKMGQIRTLSTERIGRRIARASAEEMVRV
                     VDGLNEIIDR"
     gene            complement(1683..2168)
                     /locus_tag="VLI40_01065"
     CDS             complement(1683..2168)
                     /locus_tag="VLI40_01065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95787.1"
                     /translation="MSTGEMKVLVFGNSGSGKSIYARALSAERGLPHLDLDSIVWEPG
                     KIGVQRTPEAIAGLLEDFISANPEWVIEGCYGDLVESVSAHCSELVFLNPGLDACLAN
                     NRRRPWEPHKYASMEQQNAMLDALQQWVADYYTRDDAWSYAAHRRIFDAHVGPKVERT
                     R"
BASE COUNT          461 a          659 c          739 g          461 t
ORIGIN      
        1 taaccgaagc ggtgactgaa tacggtgtgc aatcgcagta cggattgaac acggagtacg
       61 atccgcgcgc gatagttgga gacaactatg ccgatccgtc acagcgcagc tatggcaaca
      121 ctgatgtaac agggcccgat gccaaacatg gcacgcacgt ggccggcatc atcgccgcca
      181 tgccgcaaga tagcgtcggc atagagggcg tcgcgtcggc cgcgttgatc atgcctgtgc
      241 gcgctgtgcc ggatggagac gagcgcgaca aggacatcgc caatgcgatt cgctatgccg
      301 tggacaacgg cgcacgcgtg atcaacatga gcttcggcaa gccgtattcg ccgttcaagg
      361 ctgctgtcga tgccgcggtg aaatacgcgg atgcgcacgg agtgctgatg gttgtcgcgg
      421 cgggcaacga tggggcgagt ctcgacaccg catccaattt tccgacgccg gagtacacag
      481 gtggcggacg ggcggcgaac tggatcgagg tcggcgcatc gtcctggcgc ggcggcgaca
      541 cggtcgccgt ctcattttcc aattacagcc atgacaaggt cgacgtgttc gcgcctggcg
      601 aggatattct gtcgtcggtg cagggcggtg gctacgagcg gctgagcgga accagcatgg
      661 ccgcaccggt cgtgacggga ttggcggcgt tgatcatgtc gtactatcca aatctcactc
      721 ctggccaggt gcgacagatc attctcgatt cagcgacacg gtacaatcgc gcctcgctgg
      781 ttccgggaag caagtccggc gagacagctc cgtttgcgtc gttgtctgcg acaggcggta
      841 tcgtcaacgc gtacaacgca ctgaagatgg cacagcagag gagttcggcg cactagggcg
      901 gcaggtcgtc attcccgcga aagcgggaat ccatctgttg ccgactcgct ttgtgctgcc
      961 atcgcacttg aagattgata acatggattc ccgctttcgc gggaatgacg atgttttcgg
     1021 tattgtcccg ggtgtcgtgg tatgataatt tatcatacca cgaggtggct gatggctaaa
     1081 cagaaagtgg cagtaacgct cgaccggcag ctgctgatgg agatcgatga tctcgtcgca
     1141 tctggtgctt atccgaatcg aagccaggcg atagaagctg cgctcgctga gacactcgcc
     1201 cgccgcgcgc gcacgcagct cattcgcgag tgcgccaggc tcgatcctgc ggaggagcgc
     1261 gcactcgctg aggaaggact cggcgccgag ggggtcgagt ggccggcata ctgaggggcg
     1321 acattcgatg ggccgagctg gatccggcgc gaggacatga gcagtccggg cagcggccgg
     1381 tgctgatatt gagtcatgac gtgttcaacg aacgatccgg aactgtcatc gcggttgcgc
     1441 tcaccagtca ggagccgcgt gccggtttcc cgctgacgct cgagcttgga gccgcgaacc
     1501 tgccaaagcg ttcgtgggcg aagatgggcc agatacggac actttcaacg gaacgcatcg
     1561 gccggcgaat tgctcgagcg tcggccgaag agatggtgag agtagtggac ggcctcaacg
     1621 agataattga ccgataagcg ttcagccttt cagacgcttc cttttgtcgg tcgcttcgcg
     1681 actcatcgtg tgcgctccac cttcggtccg acgtgtgcat cgaagatgcg acggtgtgcg
     1741 gcgtaggacc acgcatcgtc gcgcgtgtag taatcagcga cccactgctg gagcgcgtcg
     1801 agcatcgcgt tctgctgttc catggatgcg tacttgtgcg gctcccacgg acgtcggcgg
     1861 ttgttcgcaa gacatgcatc gaggccgggg ttgagaaaca ccagctcgct gcaatgcgcc
     1921 gacacggatt caaccagatc tccgtagcat ccctcgatca cccactcggg atttgccgag
     1981 atgaaatctt ccagcaatcc tgcgatcgcc tcgggagttc gctgtactcc gatcttgcct
     2041 ggctcccaga ctatggaatc gaggtccagg tgcggcaggc cacgctccgc cgagagggcg
     2101 cgagcgtaga tgctcttgcc ggatcctgaa tttccgaaga ccagaacttt catttcgccg
     2161 gtgctcatac ccgcacgtcc accaccggcg ttcccggaac tgattgtgca tattcgacaa
     2221 tcagccgatc cgccgtcatc agcgggatgt tgttgatctg tgccgcggcg atgagcatgc
     2281 gatcggccgg gtcattgtga acagttccag cgagacgcgt
//
LOCUS       DATIMD010000045         4169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2037666, whole genome shotgun sequence.
ACCESSION   DATIMD010000045 DATIMD010000000
VERSION     DATIMD010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4169
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2037666"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..829)
                     /locus_tag="VLI40_01070"
     CDS             complement(<1..829)
                     /locus_tag="VLI40_01070"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU95788.1"
                     /translation="MPDCKPVTTSMHGKICVITGANTGIGKAAAEALAALGAQIIMIC
                     RNRAKGERALADIAAAAAKSGRGGGAELAIADLSSQAEIRSVASGILAAHPRIDVLVN
                     NAGVALNRRELTVDGIERTFAVNYLAYFMLANLLLPGLRAAGSARIVNVASNAHRRGT
                     LDFDNLQGERSYRNLRMYSESKLEDVMFTYALARRLAGTGVTANALHPGVVATEIWRQ
                     VPVLDFLSRWLMLSPEKGARTTVYLAASPDVQGVTGQYFDKCKPASTIELSHDVALQE
                     "
     gene            complement(1047..1973)
                     /locus_tag="VLI40_01075"
     CDS             complement(1047..1973)
                     /locus_tag="VLI40_01075"
                     /inference="COORDINATES: protein motif:HMM:NF024879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HSU95789.1"
                     /translation="MRSFRPAAICAVALLTVAACSKGDNKSGQDPLAQDSSLSRDLQL
                     ANNDSAAQPQLKDVPTTPPPAPPRAAQVEKRRVAAAPPPRQRTPAPVPQPKAPPVTQA
                     PVTTPSGNTVVKAPSGGNSEGTVGVVSAGTNLSLSSGQRVCTNTNSVGDRITATLAEA
                     VSGSNGVVIPAGATAVLEVTSLGRSNQAGENMNIGLVVRSIAYGGKTYPVNGQIVSAA
                     VEQVKAADNNDATKVAGGAVVGAILGHILGGRSKTKGTIIGAAGGAAAGAVLAHQTEK
                     YDACLPSGGQVVVKLDSPMSIQNATGATNGVI"
     gene            complement(1991..2515)
                     /locus_tag="VLI40_01080"
     CDS             complement(1991..2515)
                     /locus_tag="VLI40_01080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95790.1"
                     /translation="MSDDLAKDLATAKTNDALALAPHAGVQTVVSAQELSPQGRAQLR
                     ASSKSTRLVSSRTTHRDVTPSPAAELPPLPAATTTSEPAASTSDVASAAPAPVDQPAV
                     PTPRPEPVGVSYPSGESSGSTHSGGGFGAIIGAIGGAILRGGVVDGDHCDPRGRHGGT
                     ILVNHRGPIFRGTY"
     gene            2669..3187
                     /locus_tag="VLI40_01085"
     CDS             2669..3187
                     /locus_tag="VLI40_01085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4440 domain-containing protein"
                     /protein_id="HSU95791.1"
                     /translation="MIRNLVLVATLAGLAGFAGFTAVGCSGSAPGVTPLQRISAQRAI
                     RTEVEAAYDFTRPDVPGNLMALYAPTGPILSASGGRITTSRDSLRAGIQAFWTNVGQN
                     MRDARVEWTAMHIDVLAPGVAVMTATYRIPHRQPSGLPHVIGGAWTAVFVQRSGHWYI
                     IDEHLSDDPYAS"
     gene            3348..3857
                     /locus_tag="VLI40_01090"
     CDS             3348..3857
                     /locus_tag="VLI40_01090"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HSU95792.1"
                     /translation="MSEANAAGMPYLIHAFEHKAYPIPGDRPLSIGRETVCDITVNEV
                     AVSRHHAEIRQEGEAFILHPVGSTTTVMNSLPVVAPQPLQEGSTFLVGSMKFIFTRQR
                     LPVAMKIATPTERPATVDGKRPTLTFPGQPNAPEIQQPSNGMKMMPIALLAAVVIVGG
                     AAYWALSLR"
BASE COUNT          760 a         1311 c         1316 g          782 t
ORIGIN      
        1 tttcctgcaa cgcgacgtca tggctcaatt caatcgtgct tgcgggcttg cacttgtcaa
       61 agtactgccc ggtcacgcct tgcacgtcag gcgatgcggc gagatagacg gtcgtgcgcg
      121 cccctttctc cggcgacagc atgagccatc gactcagaaa atcgagaacg ggaacctgcc
      181 gccatatctc cgtcgcaacg acgcctggat gcagcgcgtt tgccgtgaca ccagtgcccg
      241 cgagtctgcg cgcgagtgcg taggtgaaca tcacatcctc cagcttgctc tccgaataca
      301 tgcgaagatt gcggtaactg cgctcgccct ggagattgtc gaagtcgagc gtgccgcgac
      361 ggtgcgcatt ggatgcgaca ttgacgatcc gggcgctgcc ggcggcacgc agccccggaa
      421 gcagcaggtt ggcgagcatg aaatacgcga gatagttcac cgcgaaagtg cgctcgatac
      481 catcgaccgt caactcgcga cgattgagcg cgacaccggc gttgttgacg agtacgtcga
      541 tgcggggatg ggcggcgagg attccggatg caacggagcg gatctcggcc tgtgacgaca
      601 ggtcggcaat ggcgagctct gcgccaccgc cgcgtccgct cttcgcggcg gctgcggcta
      661 tatcggcaag agcacgctcg cctttcgccc tgttacggca gatcattatg atctgagcgc
      721 cgagtgcggc gagcgcttcg gccgcggcct tgcctatgcc ggtgttggcg ccggtgatga
      781 cacagatctt tccgtgcatc gatgtggtga cgggcttaca gtcgggcaat gtcgtcagcc
      841 tcgcgatcgg atatgtctcg cggacatcgg attccgatca acgcacgggc ggggataaaa
      901 ccgacgttga accgattccg attgcgcctg aatgagccag gcgcggatga atccgcgccc
      961 aacgcatggc cactgaatcg gcgcgtcgac cagcgtcgcc ggttccaatt cgacgcgccg
     1021 gatcgcgtcg tcggaaacgt gatggctcag atcacgccgt tcgtcgcacc ggtggcgttc
     1081 tgaatcgaca tcggcgaatc cagcttcaca acgacctgtc caccgctcgg cagacatgca
     1141 tcgtacttct cggtctggtg cgcgaggact gcaccggcgg ctgcaccacc ggcggctccg
     1201 atgatcgttc ccttggtctt ggaccggccg ccaaggatgt gtccgaggat cgcaccgacg
     1261 acggcaccac cggccacctt ggtcgcgtcg ttgttgtcgg ctgccttcac ctgttcgaca
     1321 gctgcgctga cgatctggcc gttcaccgga taggtcttgc cgccgtaagc gatcgagcgc
     1381 actaccaggc cgatgttcat gttctcgccc gcctgattgc tgcggccaag cgaagtgact
     1441 tcgagcaccg cggtcgcgcc cgctggaatc acgacgccgt tggatcccga taccgcctcc
     1501 gccagtgtcg cggttatgcg gtcgccgacg ctgttggtat tggtgcagac gcgctgaccg
     1561 gagctgagcg agagattggt tccggcagaa acgactccga ccgttccctc gctattgcct
     1621 cccgaaggtg ccttgacgac ggtattgccc gacggcgttg ttacaggtgc ctgagtgacc
     1681 ggtggcgcct tgggctgcgg cactggcgca ggagtacgct ggcgcggtgg cggcgcagca
     1741 gcgacgcgcc ttttctcgac ctgggccgcg cgcggaggcg ctggcggagg cgttgtggga
     1801 acgtccttga gctgcggctg cgccgcgctg tcgttgttcg cgagctggag atcccgcgat
     1861 agtgatgagt cctgcgccag cggatcctgg ccggatttat tgtcgccctt gctgcatgcg
     1921 gcgacggtaa gcagcgctac tgcacagatc gccgcaggac ggaatgatct cattgagttt
     1981 ttaggttcgc ctagtaagtg ccacggaata tcggcccgcg gtgattcacc aaaatagtcc
     2041 cgccatgacg tccgcgcgga tcgcaatggt cgccgtctac tacaccgcca cgcaatattg
     2101 cgccaccgat cgcgccgatt atcgcgccga atccaccacc gctgtgtgtc gatcctgacg
     2161 actcacccga cggataggac acaccgacag gctcggggcg cggtgtcggg accgcgggtt
     2221 gatctactgg agcgggcgcc gcggatgcca catcggaagt gctcgcagca ggctccgatg
     2281 ttgtcgtcgc ggctggcaat ggcggaagct cagcggcagg cgacggcgtc acatcccggt
     2341 gcgtcgtgcg gctgctcacc agtcgcgtcg acttgctgga cgctcgaagc tgggctcggc
     2401 cctgcggcga gagctcctgc gcggacacga cggtctgcac gccagcatgg ggcgcgagtg
     2461 cgagagcatc gttggttttc gcagtagcca ggtccttcgc cagatcatca ctcattctgg
     2521 cgtcctttcc cttacaggcg gcaacactca acagcaccgc ggcggaagca aacagcgacc
     2581 cgtaacgcat gtgtcctcca gaggacgtcc ttcgaccata tttctacccg cgtactcaac
     2641 ccctgctgca atccaaggtt ccacacccat gatccgaaat ctggtgctgg tcgcgaccct
     2701 tgccggactc gccggatttg ccggatttac cgccgtcggc tgctccggat ccgcgcccgg
     2761 cgtgacgccc ctccagcgaa tctcggcaca gcgggcaatc cggaccgagg tcgaggcggc
     2821 ctacgacttc acccgtccgg acgtgcccgg gaacctgatg gcgctgtacg ctcccaccgg
     2881 cccgattctg tcggccagcg ggggacggat cacgacgtcg cgagactcgc tccgggcagg
     2941 catccaggca ttctggacca acgtaggaca gaatatgcgc gacgcgcgcg tcgagtggac
     3001 agcgatgcac atagacgtgc tggccccggg cgtggcggtg atgacggcga cctaccggat
     3061 tccgcacagg cagccgagcg ggctgccgca cgtgataggg ggcgcctgga ctgccgtttt
     3121 cgtgcagcga agtggccact ggtacatcat cgacgagcat ctgtcggacg atccgtacgc
     3181 ctcctgacgg tatttccagc ggctccgtgg gggtgtcaaa gaggagtgtc aaaaccgcgt
     3241 tttgataact cggtcacaat gtgacgatac ttgcgatggg cgacggaaag cccgggccgg
     3301 ccggctccgg tgtgcccttt gcagaaccag aatcgtcaaa actgacaatg tcggaagcaa
     3361 acgcggcagg gatgccctat ctgattcacg ccttcgagca caaggcgtac ccgatcccgg
     3421 gggatcgtcc actctcgatc gggcgggaga ccgtgtgcga catcacggtg aacgaggtcg
     3481 ccgtttcgcg gcatcacgcg gagatccggc aggagggtga ggcgttcatc ctgcacccgg
     3541 ttggatcgac gaccacggta atgaactcgc tgccagtcgt cgcccctcag ccacttcagg
     3601 aaggctcgac gttcctggtc ggatcgatga agttcatctt cacccgccag cgccttccgg
     3661 tcgccatgaa gatcgcgacc ccgaccgagc ggccggcaac agtcgatggc aagcgcccga
     3721 cgctgacgtt tccaggccag ccgaacgcgc cggagattca gcagccgtcg aacggcatga
     3781 agatgatgcc gatcgcgcta ctcgccgccg tggtgatagt aggcggcgcg gcgtactggg
     3841 cgttgagtct gaggtagcgc gaaacacggc ttggaaatcg tcattcccgc gaaagcggga
     3901 atccatgtta tcgatctttg gattcgatga tagcacgaag taactcggca gcagatggat
     3961 tcccgctttc gcgggaatga cgacggacag atggaccgcc gcggacgcga gaataacgat
     4021 tcctcttcct tactccccca gcaccggctc gtactccgta acgacagccg gctcgagatg
     4081 gctctcgcgc gacaacaccc gcgcgcacgt attccaacgc aggatcgagt catcattgtc
     4141 ctgcgggcga attgcctcgg ccttctcgt
//
LOCUS       DATIMD010000046         7620 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_17224, whole genome shotgun sequence.
ACCESSION   DATIMD010000046 DATIMD010000000
VERSION     DATIMD010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7620
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17224"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..410)
                     /locus_tag="VLI40_01095"
     CDS             complement(<1..410)
                     /locus_tag="VLI40_01095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HSU95793.1"
                     /translation="MHAAVLHALGKPPLFEEFPDPTPDEGEVLVHVCAASLKPVDKQL
                     ASGKHFASPREFPVICGVDGMGRLEDGTRIFFGGPRRPYGAMAERTVVRRAQCFLVPE
                     GVDDDVAAAIPNPGVSAWLSLKHVAKLTPGETVL"
     gene            complement(528..1148)
                     /locus_tag="VLI40_01100"
     CDS             complement(528..1148)
                     /locus_tag="VLI40_01100"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSU95794.1"
                     /translation="MLTLLPAVSGCHILDAGCGGGWYSGQLLGRRARVTAIDASAPLV
                     EHTRRRLSQYLSGEPALLQARVANLAEPLDFLPDGSVDGVVSPLVLHYLEDWRPTLRE
                     MRRVLKPGGWILLSTHHPGADAAHFPDSPYFETSLVEDDWKWVGKVKFFRRPLTEVTS
                     ALTDVGFVIDRLVEPMPTDAFRAIEPDTYQRLLERPEFLIVRARVS"
     gene            complement(1324..1839)
                     /locus_tag="VLI40_01105"
     CDS             complement(1324..1839)
                     /locus_tag="VLI40_01105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSU95795.1"
                     /translation="MANTEWWQRGPVEGVPALLQPVAHILLQVRESVNELTVNLTESE
                     WNARPANVASSAFHVRHITGVIDRLFTYARGDGLSPEQFAAIRSEGDHLPAADVAAVL
                     DALSARVDSAVAELRTIDPATLGDFREVGRAKLPSTVIGCLVHGAEHSMRHVGQLSVT
                     TRIVRAGETGA"
     gene            complement(1921..3156)
                     /locus_tag="VLI40_01110"
     CDS             complement(1921..3156)
                     /locus_tag="VLI40_01110"
                     /inference="COORDINATES: protein motif:HMM:NF042530.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6596 domain-containing protein"
                     /protein_id="HSU95796.1"
                     /translation="MTHSAKARAEDLARASYGRLLAILAASSGDIESAEDSLADAFAQ
                     ALHTWPESGVPQNPEAWLLTVARNRQHDIARSAAHRLNVSIDDATIGAVADVMDDLDP
                     DAIPDRRLALLFVCAHPAIDPVVRTPLMLQTVLGFEAEQIASAFAIPTSTMAQRLVRA
                     KRRIRDAGIPFVVPERGQMAARLAPVLEAIYGAYAIDWPLVAGVEARESLAAESHWLA
                     VTLTELLPDEPEVLGLAALISLSLARRPARGSPDDFIPLDEQDTLLWDKELIALGEQY
                     LHRARTFSDMNRFQIEAVIQSVHCARAISGVTDWLALRTLYAALLSITPTLGARVAYA
                     AAVGRVDGPGAGLEALGAIPEKAVHRFQPAWATRAQLLSESGLRDEALKAYDKAISLT
                     THRGARAHLERQRAREMRG"
     gene            complement(3153..3530)
                     /locus_tag="VLI40_01115"
     CDS             complement(3153..3530)
                     /locus_tag="VLI40_01115"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSU95797.1"
                     /translation="MRYALLIHYPQPAVSTLSDDEIKAGMAAFRAYAEALDGAGVLRS
                     AEVLQTVASATSISLKQGKLQIQDGPFADTKEQFAGIFMIDVPDLDAALAWAEKCPAA
                     HWGTVEVRPSGVRFVEGAWTRSE"
     gene            complement(4157..5386)
                     /locus_tag="VLI40_01120"
     CDS             complement(4157..5386)
                     /locus_tag="VLI40_01120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95798.1"
                     /translation="MPSIEAPAGTSRTLALVNGHWLLGDRFVAATRYVIGGTLHDHSA
                     GRPDSTLDLDGGFVVPPFGEAHNHNIEASSRVDALIARYLRDGVFYVENPDILPRNRI
                     ALTGKVNVPTGVDVIFANGGLTGSGGHPIEIARRNIARGTWTAADGEGNFYWVVDNSD
                     DLARKWPAILAQHPDFIKVFLLYSEEYERRKADTAFFGWRGINPALVPEVVRRAHAAR
                     LRVAAHIETAADFRAAVAAGVDQVAHMPGFRGDEHVHLPDPTPYTLTDADARGTARRG
                     IVVVTTLGGAGELDPAGPDSLTRRALDALHRRNLATLRRAGVHLALGSDTYSDDSRAE
                     ARYLHTLGVFSDTALVQLWSHDTPRAIFPGRAIGRLEAGDEASFLVLECDPLVRFACT
                     DSIRLRMKDGRALEVKN"
     gene            complement(5553..6245)
                     /locus_tag="VLI40_01125"
     CDS             complement(5553..6245)
                     /locus_tag="VLI40_01125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT family protein"
                     /protein_id="HSU95799.1"
                     /translation="MRHTERHRTAHIGWLRAAVLGANDGLISTASLIVGVSAAGTGRA
                     AVLIAGVAGLVAGAMSMAAGEYVSVSSQADTEAADLTRERSELAADPTAEHAELAGIF
                     ESRGVTPAVASEVAEQLMARDALGAHAREELGLSELTTARPLQAAFSSAVSFAAGAAL
                     PVLVSAFVPASYLTQAVIGTTLMLLVALGALAAQVGGASLTRGALRVVFWGALAMGAS
                     ALIGRLFGTTVS"
     gene            complement(6284..>7620)
                     /locus_tag="VLI40_01130"
     CDS             complement(6284..>7620)
                     /locus_tag="VLI40_01130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95800.1"
                     /translation="AALARARCGSIGGAIRTRDQARRTSAFAYKGKNEDLATIGRTLG
                     VTSVLQASVRRAGNKVRVTAQLMNAGDGFQLWSERFDRDLEDIFAIQDEIARSIVEQL
                     ELTLGLKESRSLVARPTEDVRAYEFYLRGREAVQQRTPPSMRRGLQFFQQAIARDPVF
                     ARAHLGVAEAYIGLGVYQAIPPSEARTQAEAAIGAATKIKPDIAAIPLLRAQLKLYLR
                     ADWPSAADDLTESLRRDPNDPLANVYMGYLSSLIGDRDARSRWTARAVELDPLSPFVR
                     GIAGMSCYCTRDYDDAMRLYEEGLSLDPNSVVCLWQSGITLDRIGRFDESLARFKRAV
                     DLSRRGALMVSFEHRELTRLGRDDEARMLFDELVSRSDNEYIGEGAWLGPALLSNDDD
                     TIEAAIRLNIEAGTGPTTLAVWVDRELEALLQHPRLGPLVHQLSLYAPRSVN"
BASE COUNT         1482 a         2402 c         2338 g         1398 t
ORIGIN      
        1 atcagcacgg tctcgcccgg ggtcagcttc gcgacgtgct tgagcgacag ccaggcagat
       61 acgccaggat tgggaatggc cgcagcgacg tcatcgtcca caccttcagg aaccagaaag
      121 cactgcgccc ggcgcaccac ggtacgctcc gccattgcgc cgtacggccg ccgtggccca
      181 ccaaagaata tccgcgttcc gtcctcgagc cgccccatcc catcgacgcc gcagataaca
      241 ggaaattcgc gcggactggc aaagtgcttt ccgctcgcca attgcttgtc gaccggcttc
      301 agcgaagctg cgcagacatg tacgaggacc tcgccttcgt ccggcgtcgg gtctggaaat
      361 tcctcgaaga gcggcggttt ccccaacgcg tgaagcacgg cggcatgcat cagcctcctc
      421 ctgtcaaagg tttatctccg ttcgccatgc gatttacgaa actgatttga cggtgacaaa
      481 tgctctactc gtccagaact tcaccttact catacgcggg caatatgtca ggaaacgcga
      541 gcgcggacta tcagaaactc cggccgctcg agcagtcgct ggtacgtatc cggctcgatc
      601 gctcgaaacg catcggtcgg catcggctcg acaagacgat cgatcacgaa gccgacgtca
      661 gtgagcgctg acgttacttc cgtgagcggc cgccggaaga actttacctt gccgacccac
      721 ttccagtcgt cttccaccag actggtctcg aagtatggac tatccggaaa gtgcgccgca
      781 tctgcacctg gatgatgcgt ggacagcagt atccagccgc caggcttgag gacccgccgc
      841 atctccctga gtgtcgggcg ccagtcctcg agataatgaa ggacgagcgg tgataccact
      901 ccgtcgacgc tgccgtccgg taaaaagtcc agcggctcgg caagattcgc cacacgagcc
      961 tgcagcagcg ccggctcacc gctgagatac tgagagagtc gtcggcgcgt gtgctcgacg
     1021 agcggcgcgc tcgcatcgat cgccgtcaca cgcgcgcggc gtccgagcaa ttgcccggag
     1081 taccacccgc cgccgcaacc ggcatcgagg atatgacaac cactgacggc tggtagcagc
     1141 gtcagcatgg ccggccgttc gtacaacgca ttgtgcggcg ctacgtctat cgccgccgcg
     1201 tatcgtgccg caaaatcggg atcggcgtat gagtcagtaa tggtgggcag tgatccgccg
     1261 tcagctgaaa tgtggtgtga aagtcgcgcc gatccgcggt gtgctcggca gatcggctgt
     1321 ctcctaggct ccggtctctc ccgcgcgcac tatgcgtgta gtcacggaga gctgccctac
     1381 atgacgcatt gaatgttctg caccatgcac gaggcagcca atcacagtcg acggaagctt
     1441 tgcgcgccca acttcgcgaa aatcgcccag cgttgctgga tcgatggtgc gtagctcggc
     1501 caccgcggag tcgacccgtg cggataacgc gtcgagtaca gcagcgacat cggctgccgg
     1561 cagatgatca ccctcggacc gaatggccgc gaactgttcc ggcgacaggc cgtcgccgcg
     1621 cgcataggta aatagacggt cgatgacacc cgtgatgtgc cgaacgtgaa atgccgacga
     1681 tgcaacgttc gcgggccggg cgttccactc cgactcggtc aggtttacag tcagctcgtt
     1741 gacgctttcg cggacctgaa gaagaatgtg tgcgacaggt tgcaggagag cagggacgcc
     1801 ctcgaccgga ccgcgctgcc accactccgt attagccatt atttgctcgg atctgatgat
     1861 tatgccgacg agataatatc gtactgtggg ccttccggaa tgtagcgaac catcgagcga
     1921 tcagcctcgc atctcccgtg cgcgttgtcg ctccagatgt gcgcgcgcgc cacgatgagt
     1981 agtcagtgag atggccttgt cgtacgcttt cagtgcctcg tcccgtaatc ccgactctga
     2041 cagtagctgc gctcgcgttg cccacgccgg ctgaaagcgg tgcacggctt tctccggaat
     2101 tgctcctagc gcttccaatc ccgcacctgg cccgtccacg cggcctaccg ctgcggcgta
     2161 ggcgacgcga gcgccgagcg ttggcgtgat cgagagcagt gcagcatata gcgtccgcaa
     2221 tgccaaccag tcggtaacac cagagatcgc tctcgcgcag tggaccgact ggatgacggc
     2281 ctcgatctgg aagcgattca tatcgctgaa cgtccgcgca cgatgcaggt actgctcacc
     2341 gagcgcaatg agctccttat cccagagtaa cgtatcctgc tcgtccagtg gtatgaaatc
     2401 gtcgggcgat ccacgcgcgg gtcgccgcgc gagcgagagc gagatgagcg cggcaaggcc
     2461 aagcacttcc ggttcgtcgg gaagcaactc ggtcagcgta acggccagcc agtgcgactc
     2521 ggcggctagc gactcgcgtg cctcgacgcc ggcaactagc ggccagtcga tcgcatatgc
     2581 accgtagatc gcttcgagca cgggcgcgag ccgtgccgcc atctggccac gctctggcac
     2641 cacaaatgga atgccggcat cccggatacg gcgctttgca cgcacaagcc gttgtgccat
     2701 cgtggacgtc gggatcgcaa aagccgaagc gatttgctcc gcctcgaacc cgagcaccgt
     2761 ctgcaacatg agcggcgtac gaacgacagg atcgatcgcg gggtgggcgc agacaaaaag
     2821 cagcgcgagc cgccgatcgg gaattgcatc cgggtccaga tcgtccatca catcggccac
     2881 tgcgccgatc gtcgcatcgt cgatcgaaac gttgagacga tgtgccgcac tccgcgcgat
     2941 gtcgtgttgc cggttgcggg cgacggtcag gagccacgct tccggattct gcggcacccc
     3001 agactccggc catgtatgca gcgcctgcgc gaacgcgtcg gcaagcgaat cctccgcaga
     3061 ttcgatgtcg ccgctcgacg ccgcgaggat ggcaagcaga cggccgtacg aggcgcgagc
     3121 gagatcctcc gctcgcgcct tcgcactatg cgtcattccg agcgcgtcca cgctccctcg
     3181 acgaagcgca ccccggacgg gcggacctcc acggtgcccc agtgagccgc cggacatttt
     3241 tcggcccacg ccagcgccgc atcgagatcc gggacgtcga tcatgaagat gccggcgaat
     3301 tgctccttgg tgtcggcgaa aggtccgtcc tgtatttgga gcttaccctg cttcagggaa
     3361 atgctcgtcg cgctcgcaac agtctgcaac acctcggccg agcgaagtac tccggctccg
     3421 tcgagcgcct cggcgtaagc acgaaacgcg gccatcccgg ccttgatctc gtcgtcgctc
     3481 agcgtgctga cggcgggctg tgggtagtgg atcaaaaggg cgtaacgcat gtgatatcct
     3541 ccagtgagtg atgagtcgga catcacaatg acgtacgagg ggagggtcaa tcgacagctg
     3601 tcctacagaa gaagtgcgga ttccccgtga cagaggttga gtggcacctt gtatctaaaa
     3661 tgcagccacg cgtgggcggc cttacggtca caccgtacgc gcggattgcc agcaaatttc
     3721 tagactagcg tccttgtaag acgtagccca gttcgttcgt atcctatctt ttcatagaag
     3781 gcgtgtgcgc catcgcgatg cttgccagac gtaacggaca ctcgcgccgc gccgcgatct
     3841 ttggcccata actcaactgc gttgcagagt tgtctaccta ctcctttctg caaatgttgt
     3901 gcatcgataa caagcgttgt tatccatgct acaagagctg gtgcatgaat ggacggaaat
     3961 atgtgacccg ttatcaagcc gatgacctga ccctccagct ctgctacgaa tgccgtcgcc
     4021 tggtggaatg cctgtaagcg ggctagttgt gtggctgctt cttcctgcgt ggcagggtaa
     4081 cccaactgac ccagcagaac ggcgatgggg attgagtctg tcgaaacggc tgttcggatt
     4141 gtgactgaag gcgacatcag tttttcacct caagtgcgcg cccgtctttc attcgcaggc
     4201 gaatcgagtc tgtacacgcg aagcgcacga gtggatcgca ctccagcaca aggaagctgg
     4261 cttcgtcgcc tgcttcgagc cgcccgattg cgcgcccggg aaagatcgcg cgcggcgtgt
     4321 catgcgacca gagttgcacg agcgcggtgt cggagaacac gccaagagtg tggagatacc
     4381 gggcctccgc cctggaatcg tcgctatacg tgtcactgcc gagcgcgaga tgtacgcctg
     4441 cgcgccgcag ggttgcaagg ttgcgccgat gcagtgcatc gagtgcgcgc cgcgtcagac
     4501 tgtcgggacc tgccggatcg agctcgccgg cgccgccgag tgtggtcacg acaacaatcc
     4561 cgcgtcgcgc agttccgcgc gcatcggcgt cggtgagcgt gtagggagtc gggtccggaa
     4621 gatggacatg ctcgtcaccc cggaaccccg gcatgtgcgc tacctggtca actccagccg
     4681 caaccgcggc gcggaaatct gccgcagtct caatgtgggc agcgacccgg agtctggccg
     4741 catgcgcacg tctgacgacc tccggtacca gcgccgggtt tatcccgcgc cagccgaaga
     4801 acgccgtgtc ggcttttcga cgctcgtact cctcggagta aagcagaaat accttgatga
     4861 agtccgggtg ctgtgcgagg atcgccggcc acttccgcgc gaggtcgtca ctgttgtcga
     4921 ctacccagta gaaattccct tcgccgtccg ccgcagtcca ggttccgcgc gcaatgttgc
     4981 gtcgcgcgat ctcgatcgga tggccgcccg agcccgtgag accgccattc gcaaagatca
     5041 catccacgcc cgtcggcacg ttgacctttc ccgtaagggc aatccggttg cgcggaagga
     5101 tgtccggatt ttcgacatag aagacgccgt cgcgcaggta tcgcgcgatg agtgcgtcga
     5161 cgcgggagga agcttcgatg ttgtgattgt gcgcttcgcc gaatggaggc acgacgaatc
     5221 ctccgtcgag gtcgagcgtc gagtcggggc ggcccgcaga atgatcgtgc agcgttccgc
     5281 ctatgacgta acgtgttgca gcgacgaacc ggtcgccgag gagccagtgt ccgttcacga
     5341 gcgcgagcgt ccggctggtg cctgcgggcg cctcgataga tggcaccgca gcggtggcac
     5401 caactggtcg tctgcgcgat cccgcacacg cccagagcgc ggcaatgccc aggagtagag
     5461 ctcggatgtg actcctctgc gctcgattca tactcacaga gtgcgagtgt tccggctact
     5521 gctcgagttc actcgcaacc gggttgagcc gatcaactca cggtcgtgcc gaagaggcgg
     5581 ccaatgagcg ccgatgctcc catcgcgagc gctccccaaa atacgacgcg caacgcaccg
     5641 cgcgtcaacg acgcgcctcc gacttgcgcc gcaagcgcgc cgagtgcaac cagaagcatc
     5701 agtgtggttc cgatcacggc ctgagtgagg tacgaggccg gaacaaatgc ggacaccagg
     5761 accggcaggg cagcgccagc cgcgaacgat acggccgatg agaaggctgc ctggagcggc
     5821 cgcgcagtag tcagttccga aaggccgagc tcttcacgtg catgtgcgcc gagagcgtcc
     5881 ctggccatca gctgttcggc aacttcactc gcgacggcag gcgtgacgcc acgagactcg
     5941 aagattccgg ccaactctgc gtgttctgcg gtgggatccg cagcgagctc gctacgctcg
     6001 cgagtcaaat ccgctgcttc ggtgtctgcc tgtgagctga ccgagacgta ctcgccagcg
     6061 gccatcgaca tggcaccggc gacgagccct gcgacaccgg cgatcagcac tgcggcacgc
     6121 ccggttccag ccgccgagac gccaacgatg aggcttgcgg tggagatgag cccatcgttc
     6181 gcgccaagaa cggcggcgcg gagccagccg atatgtgcgg tgcggtgccg ttcagtgtgg
     6241 cgcatctgta tcccgttgtg cgaggcaacc aatcatgatg gcactagtta acgctgcgtg
     6301 gggcgtagag tgaaagttgg tgcaccagag gccccagacg tggatgctgg aggagtgcct
     6361 caagctcccg atcgacccag accgcgagtg tcgtaggacc agttcccgct tcgatgttga
     6421 gacggattgc ggcctcgatc gtatcgtcat cgttgctcag cagagctggt ccgagccatg
     6481 cgccctcacc gatgtactcg ttgtcggagc gcgagacgag ctcatcgaac agcatgcgcg
     6541 cttcatcgtc gcgtccgagg cgcgtaagct cgcgatgctc gaacgacacc atcaacgcac
     6601 cgcggcggct gagatcgaca gcgcgcttga atcttgcaag tgactcgtcg aaacggccga
     6661 tgcgatcgag cgtgataccc gactgccaca ggcacaccac ggaatttgga tcgagcgaca
     6721 acccctcttc gtacaaccgc atcgcgtcgt cgtagtcgcg agtgcaatag cagctcatgc
     6781 cagcgatgcc acgcacgaac ggcgacagcg gatccaactc gacggccctg gccgtccagc
     6841 gcgagcgagc gtcgcgatca ccgatcagac tgctcaaata tcccatatag acattggcaa
     6901 gcgggtcgtt cggatcgcgg cgcagcgatt ccgtgagatc gtctgcggcc gaaggccaat
     6961 ccgctcgcag gtacagcttg agctgtgcgc gcaacaatgg gatggccgcg atgtccggct
     7021 tgatcttcgt cgccgcgccg atcgctgcct cggcctgtgt acgcgcttcc gatggcggga
     7081 tcgcctgata cacgccaagt ccgatgtaag cttcggccac gcccagatgc gcccgcgcaa
     7141 acacagggtc gcgggcgatc gcctgctgga agaactgaag tcctcgtcgc atggatggcg
     7201 gagtgcgctg ttgcaccgct tcgcggccgc gcaggtagaa ctcgtaagcg cggacgtctt
     7261 ccgtcggccg cgcgacgagt gaccgggatt ccttgagacc gagcgtgagc tccagctgct
     7321 cgacgatgct gcgtgcgatc tcatcctgaa tggcgaagat atcctcgagg tcgcggtcaa
     7381 accgctcgct ccacaactga aatccatcgc cagcgttcat gagctgcgct gtcacacgca
     7441 ccttgttgcc cgcgcgccgg acgctggctt ggagtacaga cgtaacaccg agtgtgcgtc
     7501 cgatcgtcgc caggtcctcg ttcttgccct tgtatgcgaa tgccgacgtg cggcgagctt
     7561 gatctcgcgt tcgaatcgct ccgccgatac tcccgcaccg agctctggcg agagcagctt
//
LOCUS       DATIMD010000047         3209 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4638726, whole genome shotgun sequence.
ACCESSION   DATIMD010000047 DATIMD010000000
VERSION     DATIMD010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3209
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4638726"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..787)
                     /locus_tag="VLI40_01135"
     CDS             complement(<1..787)
                     /locus_tag="VLI40_01135"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSU95801.1"
                     /translation="MGLTRRAALKGVLATTVGAVTGAAVYGVGYERHHLGLTEATLEV
                     SELPAALDGLRIGFLTDIHHSAMVPADDVVAAVALTLSTKPDLIVLGGDYVTWGDRDY
                     VGPVADLLKPLHAANGVFAILGNHDDDRDMAAALSRNRFVVLKDQLTRIVVRGEPIDL
                     IGIRFWTRRPADIARIARRAGETTILLAHDPRRLTEAAALDIPAVLSGHTHGGQVVLP
                     GIGALARRNFPVIAGLARQANTSMFVSRGVGTVYVPIRINCPPE"
     gene            813..2072
                     /gene="tyrS"
                     /locus_tag="VLI40_01140"
     CDS             813..2072
                     /gene="tyrS"
                     /locus_tag="VLI40_01140"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HSU95802.1"
                     /translation="MDLYSELAWRGLVYDATEGVRDALAAGQVTGYIGFDPTAASLHV
                     GNLLVMVALAHLQRAGHSPIAVVGGGTGLIGDPSGKTIERQLLTVEQVERNVGGIRGQ
                     LARVLDFDSVVAPARLVNNAEWLTKLTAIDFMRDVGKHFTVNGMLAKESVKRRLESEE
                     GITYTEFSYSLLQAYDFLELFDRFGCTLQMGGSDQWGNIVAGMDLIRRVRGGKAHGIV
                     LPLITTAAGTKFGKTESGTVWLDATLTSPYEFYQFWFNTDDRDAIRYLKFFTFLDAAR
                     VDELEARSAAVPERRDAQRELARQVTELVHGADAVRAAEASSASVFSDELTGAALDAI
                     FGSVPSSQTNFAEDGWAMPMFLTSNNITASNSEAVRLIRGGGITINNRRIANEKERLL
                     PSEAIDARYFLVKKGKKERFLVRIARN"
     gene            2783..>3209
                     /locus_tag="VLI40_01145"
     rRNA            2783..>3209
                     /locus_tag="VLI40_01145"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          673 a          914 c         1053 g          569 t
ORIGIN      
        1 cttcaggcgg gcagttgatc cgaatcggta cgtagaccgt accgacgccg cgactgacga
       61 acatggacgt gttcgcctgt cgcgcgagac cagcaatcac cggaaagttc cgccgggcga
      121 gagcgccgat ccccggcagg acgacctgtc caccgtgcgt gtggcctgac agcaccgccg
      181 gaatatcgag agcagccgct tcggtgaggc ggcgcggatc gtgggccagc agaatcgtcg
      241 tctcgccggc ccgacgtgcg atccgagcga tatcggcagg ccggcgcgtc cagaacctga
      301 tgccgatgag atcgatcggt tctccacgca cgacgatccg cgtcagctga tctttcagga
      361 cgacgaagcg attgcgcgag agggccgccg ccatgtcgcg gtcatcgtcg tgattcccga
      421 ggatcgcgaa cacgccgttg gcggcgtgca gcggcttcag caagtcggcg acgggcccga
      481 cgtaatcgcg gtctccccag gtgacgtagt ccccccccag cacgatgaga tcgggcttgg
      541 tgctcagtgt cagggccaca gctgcaacca catcgtcagc cggcaccatt gcactgtgat
      601 gaatgtcggt caggaatcca atgcgcagac cgtcgagcgc ggcggggagc tccgagacct
      661 caagcgtcgc ttccgtgagg ccgagatgat gacgctcgta tccgacgcca tacacggcag
      721 cgccggtcac tgcgccgacg gtcgttgcga gcacgccctt gagagcggcg cgtcgagtga
      781 gccccatttc gagggttgta tagtagcggc tgatggacct ctatagcgag ttggcgtggc
      841 gtggactggt gtacgacgca actgaaggag tccgcgacgc gctggcagca ggacaggtca
      901 ccggctacat cgggttcgat ccgaccgcgg ccagtctcca cgtcggcaat ctgctcgtga
      961 tggtggccct ggcgcacctg cagcgggccg gacattcacc gatcgcggtg gtcggtggtg
     1021 gcactggtct gatcggtgat cccagcggaa aaaccatcga gcggcaattg ctgaccgtgg
     1081 aacaggtcga gcgaaacgtc ggcggtatcc gcgggcaact ggcgcgggta ctggatttcg
     1141 acagcgttgt tgcgcccgcc cgactcgtga acaacgccga gtggctgacg aagctgaccg
     1201 ccatcgactt catgcgcgac gtcggcaagc atttcactgt gaatggcatg ctcgcgaagg
     1261 agtcggtcaa gcgacgcctg gagagcgagg aaggcatcac gtataccgag ttcagttact
     1321 cgctcttgca ggcctacgac tttctcgagc tgttcgatcg attcggctgc acgttgcaga
     1381 tgggcggcag cgaccagtgg ggcaacatcg tcgcaggtat ggacctgatt cgccgtgtgc
     1441 gcggcgggaa ggcgcacggg atcgtcctcc cgctgatcac gacggcggcg ggaacgaagt
     1501 tcgggaagac cgaatcggga accgtctggc ttgatgcgac gctgacgtcg ccgtacgagt
     1561 tctatcagtt ctggttcaac acggacgatc gcgatgcgat ccggtacctg aaattcttca
     1621 cctttctgga cgctgcgcgc gtcgatgagc tcgaggcgcg cagcgcggcg gtgcccgaac
     1681 ggcgtgatgc gcaacgcgaa ctggcgcgcc aggtgaccga actggtgcac ggcgccgatg
     1741 ccgtgcgtgc ggcggaggcc tcttcggcga gcgtcttcag tgacgaactc acgggcgcag
     1801 cattggacgc gatcttcggc agcgtaccgt cctcacagac gaactttgcg gaagacgggt
     1861 gggccatgcc gatgtttctg acgtcgaaca acatcacggc atccaacagt gaggcagtgc
     1921 gactgattcg cggcggcggg attacgatca acaatcgtcg aatcgcgaac gagaaagagc
     1981 ggctgctgcc gtcggaggcg attgacgcgc gctatttcct tgtcaagaaa ggcaagaagg
     2041 agcggttcct cgtgcgaatc gcgcgtaact gacacgaatg gattccggcc gcgcggccac
     2101 cctggttgac acgtggccga ttgatccgta gtatcaatga accgttgcgt gagaccgctg
     2161 ccgggcagcg agacgctccc ctcagcaagc atccgggagc gatttttttg cccagttgtc
     2221 agggatcgcg caacagggtt gacaatcaag acttccaatc gtagtattgg aaggttcgcc
     2281 tgacgggcgc caaacccgta gcggaggcgg acagccgagg tgttccccct tcacccccgg
     2341 tctctagagc tcagatcgct tccccgcatt gtgtggtgca gcgaaataag gcttgacggt
     2401 ggcagacggc ggtagtaacc tcgaaaggtt cccctaaaac ggacggaaac ggccgctcgg
     2461 tggggacacc ggtgaggcga cgcagaacgc gacgccgaag tcggtcttcc ggttctttga
     2521 aaactagata gtgcgtgcaa gcacaacaac gaccaaacga ggcgtcgtgg cgtcagtcac
     2581 gaagctgagt tgaaccgtcg agtgtcagcg agcagcatcg ccaaagcggc gtcgggttat
     2641 tccgtcggcg tggaggtgga tgaactgctt accaatacaa gtaagacaaa caacgcaaga
     2701 gccaagtcaa caggcgctcg cgttataagt tgccaactaa ctcatatcgg agcgatctga
     2761 tggagttagg taacagcctc tttaacatga gagtttgatc ctggctcaga atcaacgctg
     2821 gcggcgtgcc taacacatgc aagtcgaacg cggtttcccc gcaaggggaa actgagtggc
     2881 gaacgggtga gtaacacgtg ggtgacctac cttcgagtgg gggataacgt cccgaaaggg
     2941 acgctaatac cgcataacat cctgcctttg aacaggcgga gatcaaagcc ggggatcgta
     3001 agacctggcg cttgatgagg ggcccgcgtc cgattagcta gttggtgagg taatggctca
     3061 ccaaggcaac gatcggtagc cggcctgaga gggcggacgg ccacactggg actgagacac
     3121 ggcccagact cctacgggag gcagcagtgg ggaattgttc gcaatgggcg caagcctgac
     3181 gacgcaacgc cgcgtggagg atgaaggtc
//
LOCUS       DATIMD010000048         6468 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4928239, whole genome shotgun sequence.
ACCESSION   DATIMD010000048 DATIMD010000000
VERSION     DATIMD010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6468
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4928239"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1550)
                     /locus_tag="VLI40_01150"
     CDS             complement(<1..1550)
                     /locus_tag="VLI40_01150"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HSU95803.1"
                     /translation="MDDLLKDFLAESTENLAQLDQDVVELERDPSNTALLNSIFRAIH
                     TIKGTCGFLGLSRLETVSHTAESVLERLRKGALKAEPDVISDILKAVDVIKAILAGLA
                     VSQVEPAGDDSLLIALLEQWLSSDLSGRPVPSDADAIPEFTSEFATFTAEFAVMPGAG
                     ASVPATDQTAGARSSIRVSVRLLDTLMNLAGELVLSRNQLLEMSSATDDSPFAPPVQQ
                     LSRITAELQSAVMKTRMQPVGSAWSKLPRIVRDIARETGKKIELDMKGAATELDRQLV
                     QALQDPLTHMVRNSADHGIEPPDVRRAAGKDAVGRIVLNAYHEAGHVIVEVTDDGRGI
                     NADNVRRAAIERGLISTDAANEMSDCQILRFVFEPGFSTATSVTHISGRGVGMDVVRN
                     NIERVGGAVDLQSADGKGCTIRVRLPLTLAIVSSLIVSARGEMFAFPQASVLELIRLW
                     NDQLARFDVLHNIRLFRLRDDLVPVVTLGDALGLPADERDNVTTLVVCQAGASRFGII
                     VDDVVDTQ"
     gene            1776..2666
                     /locus_tag="VLI40_01155"
     CDS             1776..2666
                     /locus_tag="VLI40_01155"
                     /inference="COORDINATES: protein motif:HMM:NF020252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HSU95804.1"
                     /translation="MIDQLTAEVSSRIDAISASLTPQERTDDTVRFLRDMKASSASSI
                     KQAPQAAQRALAKTRNPDIGMAELVRVVEEDPTLGQALLRYANSAYYSTGSTVVSLRH
                     AAQRVGASGVHNVVLGVMLEGMLCRPGGEYQKMVIQVRDHLVRTAPIARAIGRGFGLI
                     PDECFSLALLHDAGKLIIFDVIGALRHETRRDVNVQKSVVSRVLKDLHEPLGGIAVLH
                     WGLGDAVAAAISTHHRNPVPTEENRMSEVLFIAEHAEHSLSGVIERDVAAWWKDGAIS
                     GDAGHVEELIAAYSESEIAA"
     gene            complement(2687..3934)
                     /locus_tag="VLI40_01160"
     CDS             complement(2687..3934)
                     /locus_tag="VLI40_01160"
                     /inference="COORDINATES: protein motif:HMM:NF021523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2252 family protein"
                     /protein_id="HSU95805.1"
                     /translation="MIHTDAPANQPPDPLESIIAANRGSDPVLRLRKYAAMRQTPFSF
                     MRGACQLFYASLPQVETLSGAPPAWLCGDLHVENFGTFKGDNRLTYFDVTDFDESALG
                     PLTLDLVRFLASIRVGADEWGVSPDDTEALVQRSLVAYSTELAVGKPSWIERESARGT
                     VKRLFAQVAGRSRTELLGRYTTRKGKRRRLVIDGQHTLAVTAEERAGVEHMMGTIADA
                     ARDREYFRIVDVAHRIAGIGSIAFPRYVVLVEGRGSPDRNVLLDVKLAHPSAIATLRA
                     HGQPAWTDEADRIVSVQRHSSVVAPAFLFAAEWNGRSYCSREMQPQEDRVRLHDWARQ
                     PKKIGEAIVLMASVAAWLHLRGGGWLGSAPIEQLSAFGRETSWRDALLQLARDAAERT
                     ELQYSEFCKAYDDGYFNEKTAAD"
     gene            4032..5378
                     /locus_tag="VLI40_01165"
     CDS             4032..5378
                     /locus_tag="VLI40_01165"
                     /inference="COORDINATES: protein motif:HMM:NF037982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HSU95806.1"
                     /translation="MTTQRAEHRRKHSAGHVATLPDIEVSNTGPRAFLRKLGPGLVTG
                     AADDDPSGIATYSQAGAAFGYGLLWTALVSLPMMIAVQLMCARVGIVAKSGLATALRE
                     HYSRSLLWFACMLLVVANTLNIAADLGGMAAAAQLLTGVPRVILVPLFAALILALLVF
                     ASYESMARVLKWFALALFAYVISAVLAHPSILGVLKGTFVPSVRWNREYLMTFVAILG
                     TTISPYLFFWQASQVAEQEEHVRARFPTRRRHGDLRRTGRELSDAAVDTESGMVVSQV
                     IMFFIILTAGATLNKAGITDVQSADQAAIALRPLAGSLAYWLFALGIIGTGMLGVPVL
                     AGSAAYAIAEAGAFKGGMDAKPDAARVFYGVMAIAMVMGTFLALTGLNAIKMLVWSAV
                     MNGVLAPPLIVIILMVCNNEKIMGRYKNGKLLNFLGWAAAILMAVAAVAMVVSFFV"
     gene            complement(5460..5717)
                     /locus_tag="VLI40_01170"
     CDS             complement(5460..5717)
                     /locus_tag="VLI40_01170"
                     /inference="COORDINATES: protein motif:HMM:NF016141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HSU95807.1"
                     /translation="MSWIWWIIVGLIAGWATGRIMKGSGYGPLMDIVLGIIGGVIGGW
                     IVTALGFSAGGGLIWSIIVAIIGAVILVWIVRLITGNRAAV"
     gene            complement(5830..>6468)
                     /locus_tag="VLI40_01175"
     CDS             complement(5830..>6468)
                     /locus_tag="VLI40_01175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95808.1"
                     /translation="FLILETNDGGLHWSRIPDAGLPPALPGEGAFAASGTSLVTCGPN
                     DAWLGTGGAATSRVFHSSDAGRTWSVVETPIKAGVAAAGIFSLACRDTRHLIAVGGNY
                     SKPDASAVTVARSDDGGSTWIASAPQLSTGFLSGVAYIDPHEAGKRIIAVGTEGTSFS
                     LDSGVTWSRMDSLSLNVVMSQAGGAAWAAGARGRVARLKGLHTGIKIEKRLP"
BASE COUNT         1259 a         1991 c         1980 g         1238 t
ORIGIN      
        1 tcctgggtgt ccacgacgtc gtcgacaatg atgccaaacc gcgacgcgcc ggcctgacag
       61 acaacgagag tcgtgacgtt gtcccgctcg tcggccggaa gcccaagcgc atcgccaagc
      121 gtcacaaccg gaacgaggtc atcgcgcaac cggaatagcc ggatgttgtg cagcacgtcg
      181 aagcgcgcaa gctgatcatt ccagagccgt atcagctcca gcacgctggc ctgcggaaac
      241 gcgaacatct ctccacgtgc gctcacgatg agcgacgaca ctatcgcgag ggtgagcggg
      301 aggcgaacac ggatggtgca tcccttgccg tccgcagact gcaggtccac cgctccgccg
      361 acgcgctcga tgttgttgcg aaccacgtcc atgccgacac cgcgaccgct tatgtgcgtt
      421 accgacgtgg cggtcgagaa accaggctcg aagacgaacc gcaatatctg acagtcgctc
      481 atttcgttcg ccgcatctgt cgatatcagc ccacgctcaa ttgcagcgcg ccgcacgtta
      541 tccgcgttga ttcccctgcc gtcgtcggtc acctcgacga tcacatgtcc agcttcgtgg
      601 tacgcgttca ggacgatcct tccgactgcg tcctttccgg cagcgcgccg tacgtccggc
      661 ggctcgattc catgatccgc cgagttccgc accatgtgcg tcaggggatc ctgcagggcc
      721 tgaaccagct ggcgatcgag ttccgtcgct gcgcccttca tgtcgagctc gatcttcttc
      781 cccgtttcgc gcgcgatatc acgcacgatg cggggaagct tgctccaggc tgatcctaca
      841 ggttgcatgc gcgttttcat cacagcgctc tgcaattcgg ccgtgattct gctcagctgc
      901 tgaaccggtg gcgcgaaggg tgaatcatcg gtcgccgacg acatctcgag aagttgatta
      961 cggctgagca cgagctcacc cgcgagattc atgagggtgt cgagcagccg gacgctcaca
     1021 cgaatcgacg accgcgcccc ggcggtctga tcggtcgccg gaaccgacgc tcccgcgcct
     1081 ggcatcactg cgaattcagc cgtgaatgtc gcgaactccg atgtgaattc cgggattgca
     1141 tcagcgtccg atgggaccgg cctgccggac aggtccgagc tgagccactg ctccagcaat
     1201 gcaatcagga gtgagtcgtc tccggcgggt tccacctgac tcacggcgag cccggccagg
     1261 atcgccttga tcacatcgac cgctttcaga atgtcggaga tgacgtccgg ctcggccttc
     1321 agagcgccct tgcgaagtct ctccagcacc gactcggcgg tgtgcgacac cgtctcgaga
     1381 cgcgacagac cgagaaatcc gcaggtgccc ttgatcgtgt ggattgcgcg gaagatcgag
     1441 ttcaggagcg ccgtattgga cgggtcgcgt tcgagctcga ccacatcctg gtcgagctga
     1501 gcgaggtttt ccgtactctc ggcgagaaag tctttgagca gatcgtccaa gtaccacatc
     1561 tccaaacggg gatggaggga gccggcggga ccggccctcc tcaccctttc aatggtcggc
     1621 ttcgcggggg gaaacttgac gtttaccagg tgctgatcgt ctcccatgcg ggccattaat
     1681 cagccccatg acgcccggcg acccttcaga tcgtcccgcg aggcgccgat actcaaccgg
     1741 gtgttcctta ttcgtgtctc tgccgtaccg attccatgat tgaccagctc accgcggagg
     1801 tctcgtcgcg gatcgacgcc atttccgcgt ccctaactcc gcaggagcgc acggatgaca
     1861 ccgtccgctt cctgcgcgac atgaaggcct cgtcggcgag cagcataaag caggctccgc
     1921 aggccgcgca gcgcgcactt gccaagacgc gcaaccctga catcggcatg gctgagctgg
     1981 tccgggtcgt cgaagaggat ccgacgcttg gacaggcact tctgcgttac gccaactcag
     2041 cctattactc gacaggcagc acggtcgtat cgcttcgtca cgctgcccag cgggtcggtg
     2101 catcgggcgt ccacaacgtc gtacttggtg tgatgctcga aggaatgctg tgcaggcccg
     2161 gcggcgaata tcagaagatg gtgattcagg tgcgcgatca cctcgtccgt accgcaccga
     2221 tagcgagagc gattggaaga gggttcggac tgattccgga cgagtgcttc tcactcgcac
     2281 tgctgcatga cgcaggcaag ctgatcatat tcgacgtgat cggcgcactc agacacgaaa
     2341 cgcgacgcga cgtgaacgtg cagaagagtg tagtgtcacg agtgctgaag gacctgcacg
     2401 agccgctggg cggaatagcc gtactgcact gggggctcgg tgacgccgtt gccgcggcga
     2461 tatcgacgca ccatcgcaac ccggtcccca ccgaagaaaa tcggatgagc gaagtgttgt
     2521 tcattgcgga gcacgcggag cactcgcttt ccggcgtaat cgagcgagac gtcgccgcgt
     2581 ggtggaagga cggcgctatc tcgggtgacg ccggacacgt cgaggaattg atcgccgcgt
     2641 attcggagag cgagatcgcg gcctagacag ttacacgacg acgctgtcag tctgccgcgg
     2701 tcttttcgtt gaagtagccg tcgtcgtacg ctttgcaaaa ttcgctgtac tggagctcgg
     2761 ttcgctcggc ggcatcacgc gccaactgca gcagcgcgtc gcgccacgac gtttcacgtc
     2821 cgaacgccga tagttgttcg atgggcgcag aacccagcca gccgccacct cgcagatgca
     2881 gccacgcggc gacggacgcc atcagtacaa tggcctcgcc gatcttcttt ggctgtctgg
     2941 cccagtcgtg cagacgaacg cgatcttcct gcggttgcat ctcgcgactg cagtagctgc
     3001 ggccattcca ttcggcagca aagagaaatg ccggagcgac gaccgatgag tgacgctgca
     3061 ctgaaactat ccggtcggct tcatcggtcc acgctggctg gccgtgtgca cgaagcgttg
     3121 cgatagccga cggatgggcg agcttcacat cgagcagcac gttgcgatcg ggcgagcccc
     3181 gcccttcgac aagcacgacg tagcgcggga aggcgatgct tccgattccc gcgatgcggt
     3241 gcgctacgtc gacgatcctg aaatactccc tgtcgcgcgc ggcgtcggcg atggtgccca
     3301 tcatgtgctc gacgccggcg cgttcttcgg cggtcactgc gagcgtgtgc tgaccatcga
     3361 tcaccaaccg gcggcgcttg cccttgcgtg tggtgtagcg accgagcagc tcggtgcggg
     3421 atcgtcccgc cacctgcgcg aacagtcgct tgacggttcc ccgcgcgctt tctctctcga
     3481 tccacgaagg cttgccgacc gccagctcgg tcgagtatgc gacgagcgag cgttgaacga
     3541 gtgcctccgt gtcatcagga gacacacccc attcgtcagc cccgacgcga atgctcgcca
     3601 ggaaccggac aagatcgagg gtcagtgggc cgagtgcgct ctcgtcgaag tccgtgacat
     3661 cgaaataggt gaggcgattg tcgcccttga aggtgccgaa gttttcgacg tgcagatcgc
     3721 cacacagcca cgccggtgga gcaccggaga gcgtctcgac ctgcggaagc gaggcgtaga
     3781 acaactggca tgctccgcgc atgaatgaga acggagtctg tctcatggcg gcatatttcc
     3841 ggagccggag caccggatcc gatccgcggt tggccgcgat aatggactcc agtgggtcag
     3901 gcggttgatt ggcgggcgcg tcggtgtgaa tcattgagct aatcgtatgc tccgccagtc
     3961 tgggcggaaa ggatgggcca ggtaacaaac ctctcaaacg ataacgccgc ccctgcggcc
     4021 gatcccatac aatgacgaca caacgagccg aacacaggag gaagcactcg gcgggccacg
     4081 ttgccacgct gccggatatt gaagttagca acaccggacc cagggcattc ctccgaaagt
     4141 tggggccagg cctggtcacc ggtgccgcag acgatgaccc gtccggaatc gctacctatt
     4201 cgcaggccgg cgcggcgttc gggtatggcc tgctctggac cgcgctggtc agcctgccca
     4261 tgatgatcgc agtacagctg atgtgcgcac gagtcggcat cgtcgccaag tcgggactcg
     4321 caaccgcgct gagagagcac tattcacgca gcctgctctg gttcgcgtgc atgctgcttg
     4381 tggtagcgaa cactctgaac atcgccgcgg atcttggcgg catggcggca gcggcgcaat
     4441 tacttacggg cgtgccacgc gtgattctcg tgccattgtt tgcagcgctg atactcgctc
     4501 tgctggtgtt cgcatcatac gaatccatgg cgcgtgtgct caaatggttc gcacttgcat
     4561 tgttcgccta cgtgatctca gcggtgctcg cacatccgag catcctcggc gtattgaagg
     4621 gaaccttcgt tccttcggtg cggtggaaca gggagtatct gatgacattc gtcgccattc
     4681 tcggaaccac gatctcaccg tatctctttt tctggcaggc atcgcaggta gcggaacagg
     4741 aagaacacgt acgggcgcga tttccgacgc gtagaaggca cggcgatctg cgtcgcaccg
     4801 gacgcgagct gagcgatgcc gccgtcgata ccgaatcagg gatggtcgta tcgcaggtca
     4861 taatgttctt cataattctg accgcgggcg cgacgctcaa caaagccgga attaccgacg
     4921 ttcagagtgc ggaccaggca gcaatcgcgc tgcgtccgct cgccggttca cttgcgtact
     4981 ggctcttcgc actcggcatc atcggtacgg gcatgctcgg cgttccagtg ctggccggct
     5041 cggcggcgta cgccattgcg gaagctggtg cgttcaaggg cggcatggat gcgaagccgg
     5101 atgccgcgcg tgtgttctac ggcgtgatgg caatcgcgat ggtgatgggc accttcctgg
     5161 cgctgaccgg actcaacgcg atcaagatgc tggtctggtc tgcggtgatg aacggagttc
     5221 tggcgccgcc actgatcgtg atcattctca tggtgtgcaa caacgaaaag atcatgggcc
     5281 gctacaagaa tggtaagctg ctcaactttc tcggctgggc agcagcaatc ctgatggccg
     5341 ttgccgcagt tgcaatggtt gtgtcgttct tcgtgtagcg acaaaaaagt ccggcgcttc
     5401 gccgagcgcc ggacttttca tgcaactatc gctcgcccac tcgcgggcga gggcaaatcc
     5461 tagactgcgg cgcggttccc ggtaataagg cgaacgatcc agaccaggat cacggcgccg
     5521 attatcgcga cgatgatcga ccagataaga ccgccgccgg ctgaaaagcc gagcgccgta
     5581 actatccaac cgccgattac accgccgatg ataccgagaa caatgtccat gagcggcccg
     5641 tagccggagc ccttcatgat tcgcccggtc gcccagccag cgatgagccc cacgatgatc
     5701 caccaaatcc acgacatgtt gcaaatctcc gttcgtagct gtggtcgggg ccgtatttaa
     5761 agacgcgaca ggtcccgttg tcattgcgtg gagcaagagg cgcgccgttg cgaggtacgc
     5821 gcggagctgt catggcaaac gtttctcgat cttaatgccg gtgtgcaaac ctttgagtcg
     5881 cgcgaccctt ccacgcgcgc cggcagccca ggcggcgccg ccagcttgcg acatgacgac
     5941 gttgagtgac agcgagtcca tacgcgacca tgtgacgccg gagtcaagcg aaaatgatgt
     6001 tccctcggtt cccacggcaa ttattcgttt gcctgcttcg tgcggatcta tataagccac
     6061 accggacaga aaaccggtcg acagttgcgg cgccgaagca atccaggtag agccaccatc
     6121 gtcgctgcgc gcgacggtta cggcggaagc atccggtttg gagtagttgc cgccgaccgc
     6181 gatgagatga cgcgtgtcgc gacaggcgag cgagaagatt ccggccgcag cgacaccggc
     6241 cttgatcggc gtttcaacca cagaccaggt tctgcccgca tccgatgaat ggaagacgcg
     6301 tgacgtggcc gctccgcccg tgcccagcca cgcatcgttc ggcccgcatg tgacgagcga
     6361 tgttccactc gcggcaaacg ccccctctcc gggaagagct ggtggaagtc ctgcgtcggg
     6421 aatgcgggac cagtgcaggc cgccatcgtt cgtttcgaga atcaggaa
//
LOCUS       DATIMD010000049         3397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_885073, whole genome shotgun sequence.
ACCESSION   DATIMD010000049 DATIMD010000000
VERSION     DATIMD010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3397
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_885073"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..543
                     /locus_tag="VLI40_01180"
     CDS             <1..543
                     /locus_tag="VLI40_01180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSU95809.1"
                     /translation="TRADRVAKLVLINVPAYDELPARDIGVMQRSTARFALRVTRGIL
                     GATTLLQPLLEGSVAQPEHMPTRLLARYLAPFAGRDGVSHLLTLGAAIRRSDIEDLDL
                     SDVRAPTLIIRGDHDEWLSRDIASRLAVDIPRATLNRIAGVARLIPEESPDNLAEQLL
                     QFIGSADAVAEFRSSASTIK"
     gene            602..874
                     /locus_tag="VLI40_01185"
     CDS             602..874
                     /locus_tag="VLI40_01185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95810.1"
                     /translation="MAKKQNSPRYQAHSAPTSQKSPLDEARDELFQHIMRCGVIGAEQ
                     EHQQEWFDATIAYFAERYPELTKLELTQLRTLGERFAQPLKTKQAV"
     gene            complement(1005..1505)
                     /locus_tag="VLI40_01190"
     CDS             complement(1005..1505)
                     /locus_tag="VLI40_01190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95811.1"
                     /translation="MMIHRAAAIAAIAISASAIAPRVTSAQTQQVAVAVSYIPSLRLD
                     VLGGNPTALQVGAGIAFPFSNYFSIGGTVGAGISSTGFSGRGDAYGQFSLDPYHQSEW
                     EPYVGGGVTVRGDGGGPGTRTYLLGFIGANGPSTGSIAPGVELGFGGGVRLGVTMRFT
                     GKPAHH"
     gene            complement(1590..2126)
                     /locus_tag="VLI40_01195"
     CDS             complement(1590..2126)
                     /locus_tag="VLI40_01195"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HSU95812.1"
                     /translation="MNRSTRLWNVPNVISSSRVVLAVAFVLINDTRARIALIAIAALT
                     DFLDGLVARLSDQRSVVGALLDPIADRLFVLAAISAYLFNGLLTTGQYFIFISRDIAT
                     AIGFIVARIIPWLRPVTFRARLLGKAVTVLQLATLMAVLLQPSATSWLIIAIAILSTM
                     SIFDYTLALWRARVRSPA"
     gene            2282..>3397
                     /locus_tag="VLI40_01200"
     CDS             2282..>3397
                     /locus_tag="VLI40_01200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95813.1"
                     /translation="MLSTYRVLLTGYFGLGAAIILWNIAAATLILRGRRSPSVSTLAT
                     GLAALLLVPALLIAVSDASLVYGRAIQHVAWLWPLVTVLFVIQAVAALSRGRVGSMLG
                     VPIVAYDLMIAIVAIARYMNSVGHAPPYFSLVLSAAQSDALGVVAGSAALSRATWLLV
                     PMFSPALPSHSRVRVAIRYVLTLGASIATALVLVELPGASETISSYSRYQHDVLTARG
                     AGDFQFGLKVFPDLRAAPPPIAIDNDFQLTDSLGVDGISIVVDPEGARGKALDSLVHS
                     LDNVRDDSTVLIVTLGYPRGARAALNRSPSAYMDDRLADVNRLARALRPSIIVPAYEP
                     YGEGARALGVRTPAYWIDFITRSAAIAHHVNPNIRVAV"
BASE COUNT          632 a         1084 c         1016 g          665 t
ORIGIN      
        1 acacgtgccg atcgcgtagc gaagctcgtg ctcatcaatg tccccgcata cgatgagctg
       61 ccggcacgcg atatcggcgt tatgcagcgc agcacggcgc gatttgccct gagggtgacg
      121 cgcggtatac tcggcgccac gaccctgctc cagccgctgc tggagggaag cgtcgcgcaa
      181 cccgagcaca tgccgactcg cctgctcgcc agatatctcg ccccgttcgc cggccgcgac
      241 ggcgtcagcc acctcctcac actcggcgcg gcgatccggc gctcggatat cgaggatctg
      301 gacctttccg acgtgagagc gccgacgctg ataatccgcg gcgatcacga cgagtggctg
      361 agccgcgaca tcgcgagtcg actcgccgtc gacatcccgc gtgcgacatt gaatcgcatc
      421 gcaggcgtgg cacggttgat cccggaagaa agtccggaca atctggctga acagttgctc
      481 caatttattg gatcagccga cgcggttgca gaatttcggt cgagtgcatc cactattaaa
      541 tgaccgacga atcagttaaa ttacagtgtt gtagcagggc gacttttctt aaccgggttt
      601 aatggcaaag aagcagaatt caccgagata ccaggcgcac tcggcgccaa cgagtcagaa
      661 gtcaccgttg gacgaggcgc gtgacgagct atttcagcac atcatgcggt gcggcgtcat
      721 aggcgccgag caggagcatc agcaggagtg gttcgacgcg acgattgcgt acttcgctga
      781 gcggtatcca gagctcacaa agctcgagct tacgcagctc cgcacgttgg gcgagcgatt
      841 cgctcaaccg ctgaagacga aacaagctgt ttgacgaacg ggcgccattg gcgcccgtta
      901 tgtttttcag ccatgtgtcg agcgtgatgt ggcgctcgac gcacgccctt cagttgagcg
      961 gtagcaatgc gttgcgaacg cattcgcaat gcgttgataa tgcgttagtg atgcgccggc
     1021 ttgcccgtga atcgcatcgt gacgccgagg cgcacgccgc cgccgaatcc tagctctaca
     1081 ccgggagcga tgctgccggt gctgggcccg ttcgcgccga tgaagccgag cagatacgta
     1141 cgcgtgcccg ggccaccacc gtcaccgcgc acggtgacgc cgccaccaac gtacggctcc
     1201 cactccgact ggtgatatgg atccagcgag aactggccat acgcgtcacc gcggccactg
     1261 aagccggtcg agctgattcc cgcgccgaca gtcccgccaa tgctgaaata attgctgaat
     1321 gggaacgcga tccccgcgcc aacctgaagc gcagtgggat taccccccag cacatccagt
     1381 cgcagtgacg gaatgtagga gaccgcgacc gcgacctgct gagtctgggc cgacgtaacg
     1441 cgcggcgcga tagcggacgc ggagatggct attgcggcga tggcggccgc gcggtgaatc
     1501 atcactgttg aagttcctct tgcgttgacg gtgtgacggc gggagctgat tgctcgtgac
     1561 ggattttgtg caggcactta tgcatgcgtt tatgcaggcg accggacacg tgcgcgccac
     1621 aatgccaatg tataatcgaa gatcgacatc gtcgacagga ttgcgatggc tatgatcaac
     1681 caggacgtag ctgatggctg cagcagcact gccatcaacg tcgcaagttg gagaaccgtc
     1741 accgccttgc cgagcaggcg tgcacgaaat gttactggcc gcagccacgg aatgatccgc
     1801 gcgacgatga atccgatcgc tgtcgcgatg tcccgcgata tgaagatgaa gtactgcccc
     1861 gttgtgagca gcccgttgaa caggtacgcc gaaattgcgg ccaggacgaa cagacggtcc
     1921 gcaatcggat ccagcagcgc tcctaccaca ctacgctgat ccgaaagcct cgcaacgagg
     1981 ccgtcgagaa aatcagtcag cgccgcgatg gcgatgaggg cgatcctcgc gcgcgtgtcg
     2041 ttgatcagca cgaacgcgac agccagcacc acgcgcgacg acgagatcac attcggtaca
     2101 ttccacaacc gcgtgctccg gttcatggcg aattataccg ggcggggtgc tgtgtagtga
     2161 attgaggtcg tcattcccgc tatagggcgc ggatgcatcc gcgccttggg aatccacgtg
     2221 cccctcgtca ttcccgcccg ccaggttgcc atcgccgagt tctctcccta gcttcggcgc
     2281 gatgctctcg acgtaccgcg tgcttctgac aggctacttc gggctcggcg cggcgatcat
     2341 tctgtggaac atcgcggccg ccaccctcat tcttcgcggt cgccggtcgc cgtccgtttc
     2401 tacccttgcg acaggcctcg cggcgctgct tcttgtgccc gccctcctga ttgccgtgtc
     2461 cgatgcctcg cttgtgtacg gacgcgcgat ccagcatgtg gcgtggctct ggccactcgt
     2521 gacggtcctc ttcgtgatcc aggccgtcgc cgcgctctcg cgtgggcggg ttggctcgat
     2581 gctcggcgtt ccgatagtcg catatgatct catgatcgcg atagtcgcga tcgcccggta
     2641 catgaattcc gtcggacacg ctccgcccta cttctcgctc gtgctctccg ccgcgcaatc
     2701 ggatgcgctt ggcgtcgtcg ctggatccgc cgccctgtcg cgcgcgacct ggctgctcgt
     2761 cccgatgttc tcgcctgccc tgccgtcgca ctcgcgcgta cgcgttgcga ttcgctacgt
     2821 gctcaccctg ggagcgagca tcgccaccgc gctcgtgctc gtggagctcc ctggcgcaag
     2881 tgagacgata agcagctaca gccgctatca gcacgatgta ctcactgctc gtggagccgg
     2941 cgactttcag ttcggcctca aggtatttcc cgatctccgt gctgcaccgc cgccgatcgc
     3001 gatcgacaac gattttcagc tcaccgattc gcttggtgtc gacggaatct cgatagtcgt
     3061 ggatcccgag ggcgcacggg gaaaggcgct ggattcactt gtccactcac tggataacgt
     3121 tcgcgacgac agcacggttc tcatcgttac tctcggctat ccgcgcggcg cgcgcgcggc
     3181 gctcaaccgt tcaccttccg cgtacatgga tgaccggctg gccgacgtca atcgtctcgc
     3241 acgtgcactc cggccgagca tcatcgtgcc ggcgtacgag ccctatggcg aaggagcccg
     3301 ggcgcttgga gtgcgaacac cggcctactg gatcgatttc atcacccggt ccgccgcgat
     3361 cgcgcatcat gtcaatccga acatccgcgt cgccgtt
//
LOCUS       DATIMD010000050         5105 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3195604, whole genome shotgun sequence.
ACCESSION   DATIMD010000050 DATIMD010000000
VERSION     DATIMD010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5105
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3195604"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(94..735)
                     /locus_tag="VLI40_01205"
     CDS             complement(94..735)
                     /locus_tag="VLI40_01205"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HSU95814.1"
                     /translation="MKSTRMLRASLIAIALAIVACLPPKRTNDVIPENTPAMLRPGDS
                     VKVAVWRNAELSGGFLVSDDGTIQHPLYQVIRVAQIPLDSVTARIGAFLTQFTTNPQF
                     VVQPEFHIVVRGEVRNPALYTVPLETTLGGAIAAAGGPTPEAQLRKVTLVRDQRSYHL
                     DLSDPAAPWTASPIRSGDQIIIGRKSNLFFGMILPLVTASAAVASLISVLRHY"
     gene            complement(807..1991)
                     /locus_tag="VLI40_01210"
     CDS             complement(807..1991)
                     /locus_tag="VLI40_01210"
                     /inference="COORDINATES: protein motif:HMM:NF026257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HSU95815.1"
                     /translation="MSEAQSAPEISLLLHCAAGDDSAAGAEALRRLAREVTDWQTLIE
                     LASRHALVPVIAQELALAASDVVPPAVLVELRTRSQQGVMRSLQLSGELVDAVHAMTA
                     FGADPIPFKGPTLAVLVYGGLSLRQYEDLDILVRRQEVERARKSLLSLGYSPVSTYNE
                     SQRASIRLSGHHEQFANPATRSTIELHWSLNTRSLSRDSFEHNWWENRQSVSIGSVEM
                     HTLGVEQMLLYLCMHGGKHSWGRLSWLCDFQRALRAYPNAYWSRVWALARENGAARMV
                     EIGLLLVESVLNGGALTAAAAQGRSPDAEAKAISELLGRRLRDQATGETSVDFRVQLR
                     ARERKRDRLRYTWHVLATPHQADVALLGLPRALHSVYYIVRPVRLLIKHLSRRVRPAR
                     AT"
     gene            complement(2016..4391)
                     /locus_tag="VLI40_01215"
     CDS             complement(2016..4391)
                     /locus_tag="VLI40_01215"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HSU95816.1"
                     /translation="MPRILPTPDGHAGAPIGELGDLKEVLAIIRRRKWLVLLIAGCAS
                     AVAGYFAYKQTPIYLAAASVRIADERHALSGGIADAPRDNIGSNYWVDPVLSQIQVLK
                     SREVAAEAIKRQPFGTNVLTVGFPTSFLQVVHVDSVEISKSLPTTFGSADFVMQDGER
                     EIRAAYGQIVSLDGLSFRIIKRPPHRNARIVLRTTSDAIGVLLDGVEARPRKSTDVVD
                     VTYRANDPVVAQQVVNRIISAYKDVNAATSQQQSVRRREFIQEQLKQTDSLFADATTA
                     LSTFRSREQVYGSDARVAAEQTGLMTLDVSREELTADKRTLQSLLDNLQNTSGAHSEK
                     LDALLASPGVANNPVVTSLFQQLIDLRTSRDSLSVGKWGAARSHPDVQKLDTLISTTQ
                     AELLSAVRSNIDAVDARLTALNDLRSRNANQLQKLPSVQAVEARLLQRVETARKMADQ
                     LREEFQRARISEAVEVGQVEIVDFAMVPNFPIGRSSLFRVLTGLLIGLIVGGGAAVML
                     ERLNTTVRRRDDIESLLRIPGLAVIPQMAGMGKLGVLGRGFRLPGQRIRRERAKGEAL
                     VTLSEFGSISAEAFRTLRTNLIFSQSIQTLRTMVVTSPSPQDGKTTTSANLAVTFAQQ
                     GMRVLLIDCDMRKARLHNMFQVAREPGFSQLLARQATVKEVTRETGVENLFLIPAGVL
                     PANPSELVGSAIARTTIESLAKEYDIVIIDTPPVHVAAEALILGSMANGVLVVLRAGY
                     SERGAALEAIQRLNNVGAHVLGAVLNDPDHKIPEYGSYYYYYDYHDDKVEA"
     gene            complement(4476..>5105)
                     /locus_tag="VLI40_01220"
     CDS             complement(4476..>5105)
                     /locus_tag="VLI40_01220"
                     /inference="COORDINATES: protein motif:HMM:NF028171.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase C-terminal
                     domain-containing protein"
                     /protein_id="HSU95817.1"
                     /translation="DDDWTYEQITYDDEDAVCRATAELIAEGNVVGWFQGRMEWGARA
                     LGNRSIVADPRRADMRDLINTKIKFREKFRPFAPSILEEALHDYFVDASADPFMQQVY
                     PVRPEKQAILPAITHADGTGRLQTVSQRTNPRYYRLIREFAALTGVPVVLNTSFNENE
                     PIVDTPEQALDCFLRTRMDVIVLNNTIIRRRSAAQTVMLSHAASSYPNT"
BASE COUNT         1014 a         1526 c         1544 g         1021 t
ORIGIN      
        1 gacgctcgcg gaagcgctta agaagaatgt gcggcttggc gtgcaggcgc aatcggtgag
       61 ctcaattcgg cgccagcttt taccgagtgc ccctcagtag tgccgtagaa cgctgatcag
      121 agatgcaacg gcggcggacg cggtgactag tggcagtatc atgccaaaaa atagattgct
      181 ctttcgtccg atgataatct gatcgcccga gcgtatcggc gatgccgtcc agggcgccgc
      241 cggatcggag agatcgaggt gataagagcg ttggtctctc acgagcgtca ccttccgcag
      301 ctgcgcctca ggcgtcggac cgcccgcagc cgcaatcgcg cccccgagtg tcgtctcgag
      361 cggcaccgtg tagagggccg gattacggac ctcgccacgt acgacgatgt ggaattctgg
      421 ctgcaccacg aactgtgggt tcgtggtgaa ttgtgtcaga aacgcgccga tccgcgccgt
      481 aactgagtcc aacggaatct gcgcgacgcg aatcacctga tagagtggat gctggatcgt
      541 cccgtcgtcc gagaccagga atcctccact gagctccgcg ttgcgccaca cggccacctt
      601 cacggaatcg ccgggacgca gcatggccgg cgtattttcc ggaatcacat cgttcgtgcg
      661 tttgggcggc aggcaggcga cgatcgccag agcgatcgcg atgagagacg cgcgcagcat
      721 gcgagtggat ttcatttata gctgtaggag agttcggaag tcgattcgag catcggcacg
      781 tgcgcgtggt gaccggacac tcaggctcag gtggcgcgag caggacgcac ccgtcgcgac
      841 aggtgcttga tcaggagacg gaccggacgt acgatgtaat agacgctgtg cagcgcacgc
      901 ggcaatccca acaacgccac gtcagcctga tgcggcgtcg cgagaacgtg ccaggtgtat
      961 cgcagccggt cgcgcttgcg ctcgcgcgcg cgaagctgca cgcgaaaatc gacagacgtt
     1021 tcgcccgtcg cctggtcgcg aagtcggcgg ccgagcaact cgctgattgc cttcgcctcg
     1081 gcatccgggc tccttccctg tgccgccgcc gcagtgagcg cgccgccatt cagaaccgac
     1141 tcgacgagca ggagcccgat ctcaaccatc cgcgctgccc cgttctcccg cgcaagtgcc
     1201 caaacgcgcg accagtacgc attgggatag gcgcgcagtg cgcgctgaaa gtcgcagagc
     1261 cagctgagtc gtccccacga gtgctttccg ccgtgcatac acaggtagag cagcatctgc
     1321 tcgacgccga gcgtgtgcat ctccacgctg ccgatcgaaa cgctctggcg attctcccac
     1381 caattgtgct cgaacgaatc acgcgagagc gaccgagtgt tcaacgacca gtgcagctcg
     1441 atcgttgaac gcgtggccgg attcgcgaat tgttcgtggt gaccggagag cctaatggag
     1501 gcgcgctggc tttcgttata tgtgctgact ggagagtagc ccagcgaaag aagtgacttg
     1561 cgggcgcgct ccacttcctg cctgcgcacg aggatgtcga gatcctcgta ctgtcgcagg
     1621 gacaggcctc cgtacacgag taccgctaac gttggcccct tgaacggtat ggggtccgcg
     1681 ccgaacgcgg tcatcgcgtg taccgcatcc acgagctctc cggagagctg aaggctgcgc
     1741 atcacaccct gctgcgatct cgtgcgaagc tcgacgagaa cagctggagg cacgacatcc
     1801 gacgccgcga gcgcgagctc ctgggcgatg actggaacga gcgcgtgacg tgaggcgagc
     1861 tcaatgagcg tctgccagtc tgtaacttct cgggcgaggc gccgcagcgc ctcggcgcca
     1921 gcagcgctat cgtcgccagc cgcgcagtgg agcagcagcg atatctctgg agcgctttgc
     1981 gcctcactca tcgcgagtgc acaggcctgg gccgactacg cctcgacttt gtcgtcgtga
     2041 tagtcgtaat aatagtagta actaccgtac tcggggatct tgtggtcggg atcattgaga
     2101 actgcaccga gcacgtgcgc gccaacgttg ttcagacgct gaatggcttc gagggcagct
     2161 cctctctcgg agtaccccgc ccgcagcacc accaagacgc cgtttgccat gctgccaagg
     2221 attaacgcct ccgcagccac atgcacgggc ggggtgtcga tgatgactat gtcgtactct
     2281 ttggcaagcg actcgatcgt ggttcgagca atcgcgctac cgacgagctc agatggattg
     2341 gcgggaagaa caccggcagg aatcagaaag agattttcga ctcccgtttc ccgagtcacc
     2401 tctttcaccg tggcctgccg agcgagcaat tgcgagaatc ctggttccct cgctacttga
     2461 aacatattgt gcaatcgggc cttgcgcata tcgcaatcaa tcagaagcac tcgcataccc
     2521 tgctgtgcaa aggtgactgc gagattagca gaggtggtcg tcttcccgtc ctgcggcgac
     2581 ggactggtaa cgaccatcgt gcgcagcgtt tggatggatt gcgagaatat caggttcgtg
     2641 cgaagagtcc tgaacgcctc cgcgcttatc gatccgaatt ccgagagagt gacgagagct
     2701 tcgcccttcg ctctttccct acgaatcctc tgacccggta atctgaaacc gcggccaagc
     2761 actccgagtt ttcccatgcc cgccatctgc ggaatgactg caagtcccgg aatccggagg
     2821 agagattcga tgtcatcgcg ccgacgcacg gtagtgttga ggcgctccag catcaccgcg
     2881 gcgccgccgc ccacaatcaa tccaatcagc agaccagtga gtacacgaaa gagcgagctt
     2941 ctgccgatcg gaaaatttgg caccattgca aaatcgacga tctccacctg gccgacttcg
     3001 acagcctccg atatacgtgc acgctgaaac tcctcgcgaa gctgatcggc catcttgcga
     3061 gctgtttcca ctcgctgcaa tagcctcgct tccactgcct gcacgctcgg aagcttctga
     3121 agttgattcg cgttgcgcga gcgaaggtcg ttcaacgccg tcagacgcgc gtcgaccgca
     3181 tcgatgttac tgcgaacagc ggatagcagc tcggcctgcg tggtcgagat gagcgtgtcc
     3241 agcttctgaa cgtcgggatg gctgcgtgct gctccccact ttccgacgct gagcgagtcg
     3301 cgcgaagtgc ggagatcaat gagctgctga aatagcgacg tgacgaccgg attattcgcg
     3361 acacccggag aagcgaggag tgcgtccaac ttctcgctat gcgctcccga cgtgttttgc
     3421 aaattgtcca ggagcgactg cagcgttctc ttgtctgcgg tcagttcctc gcgactcacg
     3481 tccagcgtca tgagcccagt ctgctccgca gcaacacgcg catcggagcc gtagacctgc
     3541 tcgcggcttc ggaaggtgct caacgcggtc gttgcatccg cgaacagcga atcggtctgc
     3601 ttcagctgct cctggatgaa ctctctgcga cgtacggatt gctgctgcga tgtggccgcg
     3661 ttgacgtctt tgtacgccga tatgatcctg ttgaccacct gctgagcgac gaccggatca
     3721 ttcgctcgat aagtaacatc cacgacatcc gtactctttc gcggacgggc ttctacgccg
     3781 tccagcagta cgccgattgc atcagaggtg gttcgtaaaa cgattctggc gttgcgatgg
     3841 gggggtcgct tgatgatccg gaaggacagg ccgtcgagcg atacaatctg gccgtaggca
     3901 gccctgattt cccgctctcc atcctgcatg acgaaatccg cgctgccgaa ggtcgtcggc
     3961 agtgatttcg aaatctcgac gctgtccaca tggacaacct gtagaaaact cgtcgggaat
     4021 ccaacggtaa gaacgttggt cccgaacggc tgccgtttga tggcttcggc tgcaacctct
     4081 ctgctcttca agacttgtat ctgcgacaga acgggatcaa cccagtagtt cgatccgatg
     4141 ttgtcgcgtg gcgcgtccgc tataccgccg ctgagtgcgt ggcgctcatc cgcaattcgt
     4201 accgacgccg ccgcgaggta aattggcgtc tgcttgtacg cgaagtagcc ggcgaccgcg
     4261 gaggcgcatc ccgcgatgag gaggaccagc cacttcctgc gtcggatgat cgcaaggact
     4321 tccttgagat cgcccagctc gccgattggg gcaccggcgt gtccgtccgg cgtaggcagg
     4381 atgcgaggca attgcgcctc gattagctgg tttggcggca gtgagcccgc ggcgggaagt
     4441 agtccggaca tcggatcgcg tggcggaagt gtcagctacg tattcggata cgacgacgcg
     4501 gcatggctca acataacagt ctgggccgca gatcgccgac gaatgatcgt gttgttgagg
     4561 acaatgacgt ccatgcgcgt tcggaggaag cagtcgagtg cctgttcggg cgtatcgacg
     4621 atcggctcgt tttcgttgaa gctggtattc aagaccacgg gaacgcccgt gagcgcagcg
     4681 aattcccgga tgagacggta gtagcgggga ttcgtgcgtt ggctcacggt ctggaggcgg
     4741 cccgttccat ccgcatgggt aatcgcgggc agaattgcct gcttttccgg acgaacggga
     4801 tagacctgct gcatgaacgg gtcggccgag gcatccacga agtaatcatg gagggcctct
     4861 tcgagaatcg aaggtgcaaa gggccggaat ttttcccgga atttgatctt cgtgttgatc
     4921 aggtctcgca tatctgcgcg cctgggatcc gccacaatgc tgcgattccc aagcgcgcgg
     4981 gcaccccact ccattcttcc ctggaaccaa ccaacgacat tcccttcagc tatgagctcg
     5041 gctgtcgcgc ggcaaacggc gtcctcatcg tcgtacgtga tctgctcgta ggtccagtca
     5101 tcgtc
//
LOCUS       DATIMD010000051         1880 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_308722, whole genome shotgun sequence.
ACCESSION   DATIMD010000051 DATIMD010000000
VERSION     DATIMD010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308722"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            306..656
                     /locus_tag="VLI40_01225"
     CDS             306..656
                     /locus_tag="VLI40_01225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95818.1"
                     /translation="MDDTPRSPDVSVLQWKALRAGAPMTGHTDRLVREAWRRYYVARL
                     AEAQFGPDSLEASIAHLQAMTSYRELRGTLRELDPYYRTGSSSANVATPAARHLKLVR
                     DDSLEPEHQPEPQP"
     gene            812..1198
                     /locus_tag="VLI40_01230"
     CDS             812..1198
                     /locus_tag="VLI40_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019239 - deaminase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rid family detoxifying hydrolase"
                     /protein_id="HSU95819.1"
                     /translation="MALQHVHTDNAPAAIGPYSQGVIVNGMLFTAGQIALDPATGQMA
                     AADVREQAEIVMRNLSAVITAAGATWADVARTTVYIHDMAAFPIVNEVYGRWLGEARP
                     ARSTVQVSALPRGALVEIDAIVAINR"
     gene            1200..1838
                     /locus_tag="VLI40_01235"
     CDS             1200..1838
                     /locus_tag="VLI40_01235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95820.1"
                     /translation="MSDSVGELSRRARHAAPVARHGCRIARHACVATMLSLLAAVPTL
                     AQRTQPVGIGRTPIVADTIADSLKRPPIAPRRAMIYSMLLPGFAQSRLNRPTSSILFA
                     VTEVLAIGMARKAALDLREARAARQDSIPTGFTADTVTGVITPTGFTQNRLVARIGAR
                     RTHYEDWIAALIFNHIISGADAYVAANLWDFKANVAVTPIPNGAAIGASLAF"
BASE COUNT          329 a          633 c          570 g          348 t
ORIGIN      
        1 gttccgcatc gcggcaagcg taatgaatcc gcctgggtcg cgctcaccgc agctcgtgtg
       61 gcaagtgtac gtggcgccga cgcatcgaca ttgggaggcc aggtcaccga aaacgctcgg
      121 cggctattca ggctgcaata acaaacagcc cgccaggttc catggtgtac ggcaaccaga
      181 tcagatgatt gttcgcagga atcggctgaa tcgagccgtc gttggcagca tgaatgtgat
      241 ctgtgactgt ggcggcaacg cccggcccgt ttcggaaacg gccccgtcct gccgatacca
      301 ccagcatgga cgacacgccc cgctcgccag atgtttcagt gctacagtgg aaggcactcc
      361 gcgcgggcgc gcccatgact ggccacaccg accgcctggt acgcgaggct tggcgtcgtt
      421 actacgttgc ccgtctcgcc gaagcccagt tcggcccgga cagcctggaa gcctccatcg
      481 cacacttgca ggcgatgacc agctatcgtg agctgcgcgg cacgcttcgc gagctggacc
      541 cttactaccg caccgggtcc tcgtccgcca acgtcgcgac tcccgcagct cgccacctca
      601 agctcgtgcg cgacgatagt ctggagccgg aacaccagcc cgagccgcag ccctgagtgc
      661 gccggcgcgc ggtcgctgaa ccgcgctacc agttacgtat cgcacgtgag cgccgcagcg
      721 cgcggaatac ttacgacgac gcggtatatt tcctgattcg tggcccgcgc tgctgcgtgg
      781 gcgttatcgc tcgctctctc acgaattcaa aatggcgctc cagcacgtcc acaccgacaa
      841 cgcacccgcg gcgatcggcc cttactcgca gggcgtgatc gtcaacggaa tgttgtttac
      901 agccggtcag attgctctcg atccagccac cggtcagatg gccgccgccg acgtgcgcga
      961 gcaggccgag atcgtcatgc gcaatctctc ggcggtgatc accgccgccg gcgcgacctg
     1021 ggccgatgtc gcacgcacca ccgtctacat ccacgacatg gctgcgtttc cgatcgtgaa
     1081 cgaggtttac ggccgctggc tcggtgaggc gcgtccggcg cgttcgacgg tgcaggtatc
     1141 cgcgctcccg cgcggtgcgc tcgttgagat cgacgccatc gtggcgatca accgctgacg
     1201 tgagcgatag cgtcggcgag ctctcgcgcc gagcacgcca cgcggctccg gttgcgcgtc
     1261 atggttgtcg gatcgcgcgc cacgcgtgcg ttgcgacgat gttgtcgctg ctcgcggccg
     1321 tgcccacact cgcgcaacga acgcaacccg tcggcatagg acggacgccg atcgtcgcag
     1381 atacgattgc ggattcgctc aagcggccgc ccatcgcacc gcgccgcgcg atgatctact
     1441 cgatgcttct gccaggcttc gcgcaatcgc gtctcaatcg tccaacatcg tcgattctct
     1501 tcgccgtgac ggaggtgctc gcgatcggga tggcgcggaa ggctgcactc gatctacgcg
     1561 aggcgcgcgc tgcgcgtcag gacagtattc ctaccggatt taccgcggat accgtcaccg
     1621 gtgtaataac tcctaccggt tttacgcaga accggctcgt cgcacgcatc ggcgcgcggc
     1681 gaacgcacta cgaggactgg attgcggcgc tcatcttcaa tcacatcatt tccggtgctg
     1741 acgcgtacgt cgctgcaaat ctctgggatt tcaaggctaa cgtcgccgtg acgccgatcc
     1801 cgaacggtgc cgccatcggc gcatcactcg cgttttgagc gggatcgttt catcgatgca
     1861 gtccaatgcg ccgatcggtg
//
LOCUS       DATIMD010000052         3139 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2329281, whole genome shotgun sequence.
ACCESSION   DATIMD010000052 DATIMD010000000
VERSION     DATIMD010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3139
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2329281"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..873)
                     /locus_tag="VLI40_01240"
     CDS             complement(<1..873)
                     /locus_tag="VLI40_01240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95821.1"
                     /translation="MLLFLITASAGAAIACNSDGSPTAPPPSPTVIASGKQIFRFETF
                     GDEKFWTDTLHMERVIQAAVDPTTALSVGLKVDMDTLPAALVQAIQAGQVDLKSPATT
                     VALIKLGAVVGVRGTVVTTNGRDSLTRVGITCALCHSTVDNAFAPGIGHRLDGWPNRD
                     LNPGAIIALSGALTPAQKAVYNSWGAGKYDPRYNFDGKNGPTVIPPAYGLAGLHSVTF
                     TGDGSDLEYWNRYVAVTQMHGQGNFSEPRLGINVQQPAPNLVEPKLPALQAYQLSLSA
                     PTPPAGSFDATAAAR"
     gene            complement(1133..1801)
                     /locus_tag="VLI40_01245"
     CDS             complement(1133..1801)
                     /locus_tag="VLI40_01245"
                     /inference="COORDINATES: protein motif:HMM:NF015146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HSU95822.1"
                     /translation="MSGGLLERDIGHDVERNLERKLELQLERHCAVLSACRACGDKVA
                     GAIPIVSTARHPRVMLVGQAPGRVEITSQRPFAGRAGKTLFSWLAQAGLSEIEARERI
                     YIAAITRCYPGPSKSGRGDRVPSPAEQELCSRWLDAELALIRPVVVIPVGRLAIDRFL
                     GNAPLDRLIGREHRRELGGCDASVIPLPHPSGASSWIHGPGHRALLDAALSVLRLRLA
                     EARG"
     gene            complement(1817..2836)
                     /locus_tag="VLI40_01250"
     CDS             complement(1817..2836)
                     /locus_tag="VLI40_01250"
                     /inference="COORDINATES: protein motif:HMM:NF013215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95823.1"
                     /translation="MRQTWLSRTGTKRGRFSYVTSSGKAVSAARAAQIDALAIPPAWT
                     DVHIAASERAAIQAWGFDTRGRKQYRYHPNAVKRGQRRKYYRVRQMARDLPAIRRRVL
                     SDFRRKDFSREKVNAAVIRLLADGFFRIGNDRYAKENGTFGLTTLRKSHVSVDGDRII
                     FDFVGKRSIRHRKTIVSRDLALFIEALLHAPGRRLFRYQDEEGAWHNIESAEVNEYLK
                     ELAGFPYSAKDFRTWGGTLRAATVLADLGAAQSEREAKKNVATAIRLVAAELGNTPTI
                     CRESYVHPVVVERYLDHGDTIRLPAPTSHRSARGARTPEERALIRFLDEYFPDRRQRR
                     RTDSE"
     gene            2835..>3139
                     /locus_tag="VLI40_01255"
     CDS             2835..>3139
                     /locus_tag="VLI40_01255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HSU95824.1"
                     /translation="MSGDPSKKAASQDHRPSGAYIQRMPSYDFITFEVADRIATITVN
                     RPDKLNALNSGTIAELGAAIDDARVRQDVGGVILTGAGRAFIAGADISELQGQSPFVA
                     "
BASE COUNT          548 a         1058 c          916 g          617 t
ORIGIN      
        1 acgcgccgca gcggtcgcgt cgaacgatcc cgcaggcggc gttggcgcgc tcaggctcag
       61 ttggtatgcc tgcagtgccg gaagcttcgg ctcgacgagg ttgggtgccg gttgctggac
      121 gttgatcccc aaccgcggct cggaaaagtt gccctgtcca tgcatctgtg tgaccgcgac
      181 gtaccgattc cagtattcca ggtcacttcc gtcccctgta aacgtcaccg aatgcaggcc
      241 tgccagtcca tacgctggcg gtatcacggt cggcccgttc ttcccgtcaa agttgtagcg
      301 cggatcgtac ttgcccgctc cccacgagtt gtacaccgct ttctgagcag gggtgagcgc
      361 accggaaagc gcaatgatcg cccccgggtt cagatcccgg ttgggccacc cgtccagccg
      421 gtgcccgatt ccgggcgcga aagcgttgtc caccgtcgag tgacacaggg cacatgtaat
      481 tccaacgcga gtcagcgagt cgcgcccgtt ggtcgtcact acggtgccgc gaactccaac
      541 cacagcgcca agcttgatga gcgccaccgt cgtcgcaggg ctcttgagat cgacctgccc
      601 agcctgaatc gcctgcacga gcgccgccgg tagcgtatcc atgtccacct tcagccccac
      661 cgacagcgcg gtcgtgggat ctacggcggc ctgaattacg cgctccatgt gcagcgtatc
      721 ggtccagaac ttctcgtcgc caaacgtttc gaaccggaaa atctgctttc cgctcgcgat
      781 cactgttggc gacggcggtg gcgcggtggg gctgccgtcg ctgttgcagg cgattgcggc
      841 ccctgccgat gcagttataa ggaagagcag catccacgct cggaacccgt cccgcgccat
      901 cctgccgcaa ttcgctaccg cgcgattgat ccacgatcct gatgacatgg ctcggctcct
      961 ttcgttttga ccggcctcgc atgcgtcgtc caacgactca tagacgcggc tggtgtctga
     1021 ataagtgaag acttctcttg acttatccta tttaacgtgg ttgccggcgt cgctgggtaa
     1081 ggtgtttgtc agattttacc ggggcatgtc gtccgggcgg cgcttttaac gatcaaccgc
     1141 gcgcttcggc gaggcgcagc ctgagcacgg atagcgcagc gtccagcagg gcccggtgtc
     1201 ccgggccgtg tatccagctg ctcgcacccg acggatgcgg caggggaatc acgctcgcgt
     1261 cgcatccgcc gagctcgcgc ctgtgctcgc gtccgatcag ccggtccagc ggggcgttgc
     1321 caagaaaccg gtcgattgca aggcgaccca ccggaattac caccacgggc ctgatcagcg
     1381 cgagctccgc gtccagccaa cggctgcaca gctcctgctc cgccggagac ggcacacggt
     1441 cgccacgacc gcttttgctc gggcccggat aacaacgcgt gatcgcggca atgtatatcc
     1501 gctcgcgcgc ctcgatctcg ctcagccccg cctgcgccag ccacgagaat aacgtcttcc
     1561 ccgcgcgccc ggcgaacggt cgctggctgg ttatctcgac ccgcccgggc gcctgcccga
     1621 ccagcatcac tcgcgggtgt cgtgccgtcg acacgattgg tatcgcgccc gcaaccttgt
     1681 cgccgcatgc gcggcacgcg ctcaacaccg cgcagtgccg ctccaactgc agctccagct
     1741 ttcgttcgag attccgttcg acatcgtggc cgatgtcgcg ctcgagtaac ccaccagaca
     1801 ttcgcgacgt acacctctat tccgaatcgg tgcgtctccg ctgccgtcgg tcgggaaaat
     1861 attcgtccag aaatcggatc agtgcacgct cttccggcgt ccgtgcaccg cgcgccgacc
     1921 gatgactggt cggtgccggt agtcgaattg tatcaccgtg gtccagatat ctctcgacga
     1981 caaccggatg cacgtacgat tctctgcaga tcgttggcgt atttcccagc tcagccgcga
     2041 cgagcctgat cgctgtcgca acgttcttct ttgcctcgcg ctccgattgc gccgctccca
     2101 gatcggcgag cacggttgcc gcgcgcaagg tcccgcccca ggtacggaag tccttcgcgc
     2161 tatacggaaa tcccgcaagc tccttcagat actcgttgac ctcggcggac tcgatgttgt
     2221 gccacgcgcc ctcctcgtcc tgatagcgaa acagcctccg ccccggtgca tgcagcagcg
     2281 cctcgatgaa tagtgcgaga tcccggctca cgattgtctt ccggtgcctg atcgatcgct
     2341 ttcccacgaa gtcgaaaata attctgtcgc cgtccacgct tacgtgcgac ttccgcaagg
     2401 tggtgagacc aaacgtgccg ttttcctttg cgtatctgtc gttgccgatg cgaaagaaac
     2461 catccgcgag caatcggatg acagctgcgt tgactttctc acgcgagaaa tccttgcggc
     2521 ggaaatccga taataccctt cgccgaatcg cggggagatc gcgcgccatc tgccgcacgc
     2581 gataatactt ccgccgctgg ccacgcttga ccgcgttggg atgatagcga tactgcttgc
     2641 ggccacgcgt gtcaaagccc cacgcctgaa tcgcggcgcg ttcgctcgcg gcaatgtgga
     2701 cgtcggtcca ggccggcgga atcgcaagcg cgtcgatctg tgcggcgcgc gcagcgctca
     2761 cggcctttcc cgatgacgtt acatagctga aacggccgcg cttggtgccg gttctcgaga
     2821 gccaggtctg ccgcatgtcc ggcgatccga gcaagaaggc tgcctcgcag gaccatcggc
     2881 ccagcggcgc ttatattcag cgcatgcctt cctatgactt tatcaccttt gaagtcgccg
     2941 accggatcgc gacgatcacg gtcaaccgcc ccgacaagct caacgcactc aactccggaa
     3001 ccatagcaga gctcggcgcc gcaatcgacg acgcgcgggt gcgtcaggac gtcggcggcg
     3061 tgattctcac cggcgctgga cgcgcgttca tcgcaggagc cgacatcagc gagctgcagg
     3121 gtcagtcgcc gttcgtcgc
//
LOCUS       DATIMD010000053         1932 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1752890, whole genome shotgun sequence.
ACCESSION   DATIMD010000053 DATIMD010000000
VERSION     DATIMD010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1752890"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..570)
                     /locus_tag="VLI40_01260"
     CDS             complement(<1..570)
                     /locus_tag="VLI40_01260"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU95825.1"
                     /translation="MTSPAVSSRSMRTVLIASCAGSMIEWYDFFIFGSLAAILAHQFY
                     PPNNPTASFLETLATFAVGFAVRPIGALFFGRIGDRLGRKKAFLTTLVVMGASTSAIG
                     LLPGFATIGFLAPVILVALRLVQGLALGGEYGGAAVYVAEHAPEGKRGYYTSFIYTTA
                     TVGLLVSLLVILVTRKLTGETAFAAWGWRV"
     gene            615..1409
                     /locus_tag="VLI40_01265"
     CDS             615..1409
                     /locus_tag="VLI40_01265"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: protein motif:HMM:NF003814.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HSU95826.1"
                     /translation="MNAAPDTAPGGRLAVDLNADMGEGFGRYRLNDDALLATVTSASI
                     ACGFHAGDPVVMRETVMSALARGVTIGAHPGYPDLVGFGRRDLAVPPSEVEAIVVYQV
                     GALQAVCAAAGAKLRYVKPHGSLYNRAARDAAAADAIAHAVRSVDSSLILLGLARSAL
                     IEAADRIGIRSVSEAFVDRGYRSDGTLVPRGEPGAILTDVSTIAERALRMVEKGTVLS
                     VDGHVVVVRAESFCTHGDGPDAVAIVRAVRARLEQAGVGIASFARA"
     gene            1434..>1932
                     /locus_tag="VLI40_01270"
     CDS             1434..>1932
                     /locus_tag="VLI40_01270"
                     /inference="COORDINATES: protein motif:HMM:NF014712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allophanate hydrolase subunit 1"
                     /protein_id="HSU95827.1"
                     /translation="MDEFPAIQQLGDDALLVTFAHAISWDVGARVRSVAQRIRDMHLL
                     SVTDVVPAYTTLAVYFDSRVVSFANISSLVADLAEVTETETDASSTLIEIPVRYDGPD
                     LADVAERTGLKHDEVIEKHCSRIYRAYMTGFAPGFTYLGDLDEALVLPRRTEPRVRVP
                     AGSVAI"
BASE COUNT          350 a          550 c          678 g          354 t
ORIGIN      
        1 aacgcgccag ccccacgcgg cgaacgcggt ctcgcccgtc agcttgcgcg tgacaaggat
       61 gacgagcagc gagacaagca atcccactgt cgccgtggta tagatgaaac tcgtgtaata
      121 gccgcgtttc ccctccggtg cgtgctcggc cacgtaaacc gcggcgccgc cgtactcgcc
      181 gcccagcgcg agtccctgaa cgaggcggag ggcaacgagg atgactggag cgaggaagcc
      241 gatcgtcgcg aagcccggca ggaggccgat cgcggatgtg gaggctccca tgacgacgag
      301 cgtggtgaga aacgccttct tgcgtccgag ccggtcgccg atacgcccga agaagagcgc
      361 tccgatgggc cgaaccgcga aacccacagc gaaggtcgcg agcgtttcga ggaagctggc
      421 cgtcgggttg ttgggcggat agaactggtg ggccagaatc gccgcgagcg acccgaagat
      481 gaagaaatcg taccactcga tcatcgagcc cgcgcaggac gcgatgagga cggttcgcat
      541 cgagcgcgag gagacggcgg gagaagtcat gccagaagtt gcggcggcag tgttcggccc
      601 gcaactttgc cttgatgaat gccgcgccag ataccgcgcc aggaggccgc ctggcggtcg
      661 acctcaatgc cgacatgggc gaagggttcg gacgctatcg gctgaacgat gacgctctgc
      721 tcgcaacagt gacgtcggcg agtatcgcgt gcggattcca tgccggtgat cccgtcgtga
      781 tgcgtgagac ggtgatgagc gcgctcgcgc gaggggtaac gatcggcgcg catccggggt
      841 atccggacct cgtaggattc gggcgccgcg atcttgcggt gccgccgtcc gaggtcgaag
      901 cgatcgtggt gtatcaggtc ggcgcactgc aggcggtgtg cgccgctgcg ggtgcgaagc
      961 tccggtacgt caagccgcac gggtcgctgt acaatcgtgc cgcgcgcgac gctgctgctg
     1021 cagacgcgat cgcgcatgcg gtgcgatcgg tcgattcgtc gctcattctg ctcgggctcg
     1081 cgcgaagcgc gttgatcgaa gctgcggaca ggataggaat ccggagtgtg agcgaggcgt
     1141 ttgtcgatcg cgggtatcgc agcgacggaa cgctggtgcc gcgcggggag ccgggcgcga
     1201 tattgactga cgtcagcacg atcgccgagc gagcgttgcg aatggtggag aaaggcaccg
     1261 tgctttcggt ggatggacac gtcgtagtcg tacgtgcgga atcgttctgt acacacggtg
     1321 atggtcccga cgcggtcgcg atcgttcgcg ccgtacgcgc gcgcctggaa caggccggcg
     1381 tcggtatcgc gtcgttcgcg cgagcgtgat tcgcgcccgg cttgtgtggc gccatggatg
     1441 agtttccggc aatacagcag ctcggtgatg atgcgctgct cgtgacgttt gcacacgcga
     1501 tatcatggga cgtcggcgct cgcgtgcgtt cggtcgctca gcgcattcgt gacatgcatc
     1561 tactttcggt tacggatgtt gtgccggcgt acacgacact tgcggtgtat ttcgatagtc
     1621 gggtagtgtc gttcgcaaat atctcgtcgc tggtcgcaga tctggcggaa gttacggaaa
     1681 cagagaccga tgccagctcg acgttgatcg agatccccgt gcgttatgac ggtcctgacc
     1741 tggccgatgt cgcggagcgc acggggctga agcacgacga ggtgatcgag aagcactgtt
     1801 cgcgaattta tcgcgcatac atgacggggt ttgcacccgg cttcacatat ctcggtgatc
     1861 tggatgaagc actggtactt ccgcgacgca ccgagccgcg cgtgcgcgtt cctgctggat
     1921 ccgttgcgat ag
//
LOCUS       DATIMD010000054         7241 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1753275, whole genome shotgun sequence.
ACCESSION   DATIMD010000054 DATIMD010000000
VERSION     DATIMD010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7241
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1753275"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..958
                     /locus_tag="VLI40_01275"
     CDS             <1..958
                     /locus_tag="VLI40_01275"
                     /inference="COORDINATES: protein motif:HMM:TIGR00368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HSU95828.1"
                     /translation="EVDFSDVVGQESAKRALEVAAAGSHNLVMIGPPGAGKTMLARRL
                     PTILPDLSEEEALEVISIHSVAGVLSPEITLGARPFRAPHHSISGAGLIGGGSTPRPG
                     EVSLAHNGVLFLDEMLEFSRAVLDGLRQPLEDASVVIARAAMSVSFPARFTLVGATNP
                     CPCGRAGEPGRKCSCGAAEVAKYAARMSGPLVDRIDMHVPVGAVALRDLSADTEGGEK
                     SSAMRERVGCARSVQRARYRALRGVTCNAHVPGRWLDRHTPIDHDARTLLQSAANALE
                     LSARAYHRVLKVARTIADLEREDGVIARHIAEALRYRPVTRP"
     gene            complement(1168..2193)
                     /locus_tag="VLI40_01280"
     CDS             complement(1168..2193)
                     /locus_tag="VLI40_01280"
                     /inference="COORDINATES: protein motif:HMM:TIGR02271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YsnF/AvaK domain-containing protein"
                     /protein_id="HSU95829.1"
                     /translation="MTDAARDAARTAANDVKNAARKVTGKTAAGAESTTDRVVDGPDS
                     TRASDTGRKVGEGVGGAAGVGAGAAVGSLAGPVGTVVGAIAGAVGGWWAGRGVSDAAA
                     SYSNTNDTYYRNRFADLPESSRGRFASYDRARPAYELGYLASQNPDYRGRSFDQVESD
                     LRRGWTPEVERETGYSWNDARNVVAEGYAHGSTSAQERTAAQGSTTANEQRITRSEEE
                     LVVSKRPVKAGEVDLKKTVQTEHVSKSVPLRHDEVDVERHPISADRNAKDVKIGEQTV
                     SIPLTAEEPVVNKRAVAKEEVIVKKHAVEEKRNVEADLRKERVDINKSGRANTTNTDT
                     NPDVPPR"
     gene            complement(2258..3184)
                     /locus_tag="VLI40_01285"
     CDS             complement(2258..3184)
                     /locus_tag="VLI40_01285"
                     /inference="COORDINATES: protein motif:HMM:TIGR02271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2382 domain-containing protein"
                     /protein_id="HSU95830.1"
                     /translation="MDDRHTRASDSDLRNDTPRVAPLKDLDDYQVAEGVPDPRGWDVF
                     GADAVKVGKVHDLIVDTGAMRTRYLDISLDKDAIGARDDRDVLVPVGLARLDDAHDHV
                     TLNALSNAQLAALPAFTHGEITRNYESSVVGALPATAMANADTADVSDYYANKHFDDR
                     QFYGNRRTPVDANRNAERREEQPGEARVTRSEEELDVGKREARVGDVTVNKHVDTEHV
                     TQPVTARREEVTIERRPLRADEGVTASKIGDDTEVHIPVTEEQISVEKRAVPKEEIVV
                     KKHVVTEDRKVEADLRKEHVDVERSGDARDAS"
     gene            complement(3316..3540)
                     /locus_tag="VLI40_01290"
     CDS             complement(3316..3540)
                     /locus_tag="VLI40_01290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95831.1"
                     /translation="MADIPIEHKSGRAIWPWIIGLIILIVILWLIFARHKAAPVAPAV
                     TDTTTMTTPRTDTLPAAAPVGSTTTPPRRP"
     gene            3923..4426
                     /locus_tag="VLI40_01295"
     CDS             3923..4426
                     /locus_tag="VLI40_01295"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU95832.1"
                     /translation="MTDDSSATYTVPSGVDIGHTHLKVADLDRALAFYHGVLGFDITQ
                     RYGTQAAFVSAGGYHHHIGLNTWESRGGTAPPRGHTGLYHVAIRYPTQRDLAVAVRRV
                     IDAGIPLQGAADHGVSEAIYLSDPDGNGIELYWDRPREEWPRAESGLPYMGTDPLDLE
                     ALLQKAG"
     gene            4503..5087
                     /locus_tag="VLI40_01300"
     CDS             4503..5087
                     /locus_tag="VLI40_01300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95833.1"
                     /translation="MIVAAGYYWWTVKASPSAPAPGAWHAVTAEDASAGESAVNGLRA
                     NQGKVFANLTPAQAVAYLIQTTAKQLPPSSTDVQAMVSGDQLHVRAVVPLRELGADRA
                     LGPLASMLSARDTVELAGRVDLIRAGLAQMHVTKAQIHQLAVPNAMIPKLVQQIRHDA
                     PPGIAPDAFPIPLPSYIGDIRIADGKVTLYKNVQ"
     gene            5087..6586
                     /locus_tag="VLI40_01305"
     CDS             5087..6586
                     /locus_tag="VLI40_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSU95834.1"
                     /translation="MKVFKNFVAGAWVEPSTGKYFDNRNPADLNDVIGKFPLSNSTDV
                     DRAVASAKRGFELWKATPAPQRGDILRKAGDLLVARKEEIADAMTREMGKPLTETRGD
                     VQEGIDTAYYAATMGRQLSGRTVPSELRNKWAMSFRRPIGVAGLICPFNFPMAIPTWK
                     MFPALVCGNSVIFKPAEDVPHTGTLLVEILLDAGLPPEVIQLLHGTGEDVGAPLVEHP
                     DVPLISFTGSTATGSIVGATCGRMHKRLSLEMGGKNAQIVLDDADLDLALEGALWGAF
                     GTTGQRCTATSRLILQKGIHDNFLGMLVERTKALKLGDGRKKGTDVGPVINEAALRKI
                     EHYVDIGQAGGADIVCGAQRPSGDAFKDGLFYEPTIFTRVEPTQRIAYEEIFGPVLSV
                     IRVSTPDEAFAVNNAVKYGLSSSVYTRDVNISFRALQELDNGITYINAPTIGAEAHLP
                     FGGVKQTGNGHREGGWEVYDFYSETKVGYVDYSGTLQRAQIDTYLGTPD"
     gene            6829..>7241
                     /gene="lepB"
                     /locus_tag="VLI40_01310"
     CDS             6829..>7241
                     /gene="lepB"
                     /locus_tag="VLI40_01310"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HSU95835.1"
                     /translation="MLLFLVTRALVVEMYKIPTPSMQRTLLVGDFLVVNKMVYGPELP
                     FTNIKLPGIRQPRRGDVIVFKWPSDPSINFVKRVVGTPGDTLLMRNGVLQRNGLPLKE
                     SYVTHTSADADMAVDEFRWQRDYLVRSAQASGAYWP"
BASE COUNT         1243 a         2249 c         2254 g         1495 t
ORIGIN      
        1 cgaagttgat ttctcggatg tcgtgggtca ggaaagtgcg aagcgcgcgc tggaagtcgc
       61 ggcggcgggg tcgcataatc tcgtcatgat cggaccgccg ggcgccggca agacgatgct
      121 cgcgcgacgc cttccgacga ttcttcccga tctcagcgag gaggaagcac tcgaggtgat
      181 ctccattcac tcggtcgccg gtgtgttgtc gccggagatc acgcttggag cgcgtccgtt
      241 tcgcgcgccg catcactcca tatcaggggc cggtctcatt ggtggcggaa gcactccacg
      301 acctggcgaa gtgagtctcg cgcacaacgg agttctcttt ctggatgaga tgcttgagtt
      361 ttcacgcgcg gttctggatg gactgcggca gccgctcgaa gatgcgtcgg tagtcatcgc
      421 gcgcgcggcg atgtcggtca gctttccggc gcgattcacg ctcgttggtg cgacaaaccc
      481 gtgtccgtgt ggacgagccg gagagccggg ccgcaagtgc agctgcggcg cagcggaggt
      541 cgcaaagtac gcggcgcgaa tgtcgggccc tctcgtcgac agaatcgaca tgcatgttcc
      601 ggtgggtgcg gttgcgctgc gcgatctgag cgcggatacc gagggtggcg agaagtcgtc
      661 cgcgatgcgg gagcgggtcg gctgcgcgcg ctccgttcag cgtgcgcggt atcgggcgct
      721 gcgcggcgtc acgtgcaacg cacacgtgcc gggtcggtgg ctggatcggc acacgcccat
      781 cgaccatgac gcacgcacgt tgctgcagtc agccgccaac gcgctggagc tgtctgcgcg
      841 cgcctaccac agggtcctga aagtcgcgcg caccatcgct gatctcgagc gtgaagatgg
      901 cgtcatcgcg cggcacatag ccgaggcgtt gcgttacaga ccggtgacgc ggccatgacc
      961 atcatgaagc aatgcgacgc cgtaacgcac tgcgcaacgt actgcgcaac gtactgcgca
     1021 acgtactgct gcaacgcact gctgtaacac aaactgggag agccggatgc aagtaccgca
     1081 tccggctctg gatcgcactg tctctttcgg cctcgttcaa tccgaatacg cgttcgtcgc
     1141 ggctcggccg cacccgtcac gagcgtgcta gcgcggcggt acgtccgggt tggtatcggt
     1201 gttagtcgta ttggcacgac ctgacttgtt gatatcgacg cgttccttgc ggagatcggc
     1261 ctcgacgttt cgtttttcct ccactgcgtg ctttttgacg atcacctctt ccttggcgac
     1321 cgcacgcttg ttgacgacgg gttcttcggc tgtgagcggg atgctgacgg tctgctctcc
     1381 gattttgacg tcctttgcgt tccggtcggc ggagatcggg tggcgctcga catcgacctc
     1441 gtcgtgtcgc aatggcaccg atttactcac atgctccgtt tgcaccgtct ttttcaagtc
     1501 cacttcacca gccttcacag gccgcttgct gacgaccagc tcttcttccg agcgcgtgat
     1561 tctctgctcg ttcgcggtgg tactcccctg cgcagctgtg cgctcctgcg cgctggtgct
     1621 tccgtgtgcg tacccctcgg cgaccacgtt gcgtgcgtcg ttccatgagt agcccgtctc
     1681 acgctcgact tccggcgtcc aaccgcggcg gaggtcgctc tcgacctgat cgaagctccg
     1741 tccgcggtaa tcaggattct gcgacgccag atacccgagc tcgtacgccg gtcgtgcccg
     1801 atcgtacgaa gcgaaacgac cgcgcgagct ctccggcaga tctgcaaagc ggttccgata
     1861 gtaggtgtcg ttcgtgttcg agtatgatgc cgccgcgtcg gaaactcccc ggccggccca
     1921 ccatccgccg actgcgccgg caatcgcgcc gaccaccgtt cctaccggcc ccgcaagtga
     1981 tccgacggca gcgccggcac caacccccgc ggcgccaccc actccctcgc cgaccttgcg
     2041 acccgtgtcc gacgcgcgcg tggagtccgg tccatccacc acgcggtcag ttgtgctctc
     2101 ggcaccggct gccgttttcc cggtgacctt ccttgcagcg ttctttacgt cgttcgctgc
     2161 ggttcgcgcg gcgtcgcgcg ccgcatccgt catgctcctg tcattcgtgt ccatgctgct
     2221 ctcccggtac tgatgaaaat tgaaacggtc acgcttctca cgacgcgtcg cgcgcgtctc
     2281 cacttcgctc gacgtcgacg tgttccttgc ggaggtcggc ctctactttc ctgtcttcag
     2341 tgaccacgtg cttcttgacg acgatctctt ccttggggac cgcgcgcttc tctaccgaga
     2401 tttgctcctc cgtaacgggt atgtgtactt cggtatcgtc accgatcttg cttgctgtta
     2461 cgccctcgtc ggcgcgaagc ggacgtcgct cgatggtaac ttcttcgcgt cgcgcggtta
     2521 cgggctgcgt cacgtgttcc gtgtcaacat gcttgttgac agttacgtcc ccgactcgtg
     2581 cttcgcgttt gcccacgtcc agttcttcct cggaccgggt aacgcgtgcc tccccgggct
     2641 gctcctcacg acgttcggcg ttgcgattcg cgtcgaccgg tgtacggcga ttgccgtaga
     2701 actggcggtc gtcgaagtgc ttgttcgcgt aatagtcgga cacgtcggcg gtatcggcgt
     2761 ttgccatggc cgtcgcggga agcgccccta ccacggatga ctcgtagttg cgcgtgatct
     2821 cgccatgcgt gaacgccgga agcgccgcga gctgcgcgtt gctgagagcg ttgagtgtga
     2881 catgatcgtg cgcatcgtcc agcctcgcga gaccaaccgg aacgagcaca tcccggtcgt
     2941 cgcgcgcgcc aattgcatcc ttgtccagcg agatgtccag atagcgcgtg cgcatcgccc
     3001 ccgtatcgac tatgagatcg tgcaccttgc caaccttgac ggcgtccgcg ccgaaaacgt
     3061 cccagcccct cggatccgga actccttcgg cgacctggta gtcatccaga tccttgagcg
     3121 gtgcgacgcg cggcgtatcg ttccgtagat cgctatcgct ggctcgcgtg tgtctgtcgt
     3181 ccattgttgc gcctcccgtt gtgatgtgta ctgtgtatca tcgttgcctc tcgcggacct
     3241 ggttcgttcg cggtttgcgg cgtaacacgt tgctcactga gcgatcgtac catcgatcga
     3301 ccgtctcacg gtttttcagg gccgtcgtgg tggtgtcgtg gtgctcccga ctggcgcggc
     3361 cgcgggaaga gtatcagtac gcggtgtcgt cattgtagtg gtgtcggtta ccgcgggggc
     3421 caccggagct gccttgtgcc gcgcaaaaat cagccacagt atcacgatga ggatgatcag
     3481 gccgatgatc cacggccaga ttgcgcgtcc cgacttgtgc tcgattggaa tgtcagccat
     3541 tggacaccgg ccgcgtttcc atgacagcga ttgcagatgc gtgacgttcg tggtttggcc
     3601 gtgtacgtgg ccgtgtacgt ggcggtgtac gctcggctgc gcgtgaagtg agggtcatgg
     3661 gtgctctcct gagtcgatgc atctgggtga gtggtgcgtc catcgggcga tccggacctg
     3721 gctggcacgc tttcgcggca tcgcgatcgc ccgcgccatc aactgcattc cgttcgggga
     3781 gtcccgcgca ggaaaggggc ccacgtcacg acaatccggt aaacagcccg cgcggaacgc
     3841 aggtgcatcc gcgtccgggg tgattcatta aattttgtgt tgatgggcat catgcccacg
     3901 tatctcgccg cacggaggcc cgttgactga cgacagttca gctacgtaca cagttccttc
     3961 cggcgtcgac ataggtcaca cgcatctcaa ggtcgccgac ctcgaccgtg ccctcgcctt
     4021 ttaccacggc gtgcttggct tcgacataac gcaacgctat ggaacgcagg ccgcgttcgt
     4081 ttcggccggc ggctatcatc atcacatagg actcaatacg tgggagagcc gcggcgggac
     4141 tgcgccgccg cgaggccaca cagggcttta tcacgtcgcg atccgttatc cgactcaacg
     4201 tgacctggcg gtcgcggtca ggcgcgtcat cgacgcaggc atcccgttgc agggtgcggc
     4261 ggatcatgga gtgagtgagg cgatctatct cagcgatccg gacgggaacg ggatcgagct
     4321 gtactgggat cggccgcgcg aggagtggcc cagagcggaa agcggcctcc catacatggg
     4381 caccgatccg ctggatctgg aggcgttgct gcagaaggcg gggtgaccag cccacccgct
     4441 accggctaac tttcagaatg ttcgggtgcc ttcgaagagt tggatgcctc ataatcctcg
     4501 cggtgatcgt cgcagcgggc tattactggt ggaccgtgaa ggcctctcct tcggcgccag
     4561 cgcccggtgc gtggcacgca gtgaccgctg aggatgcatc agcgggcgag tccgccgtca
     4621 acggcctgag agccaaccag ggcaaggtgt tcgccaatct tacaccggct caggcagtcg
     4681 cttatctgat tcagaccacg gcgaagcaac tgccgccgtc atcgaccgac gtgcaggcca
     4741 tggtgtccgg cgaccagctt cacgttcgcg ccgtggtgcc gctccgtgag ctgggcgccg
     4801 accgcgctct tggccccctg gcgtcgatgc tgagcgcgcg cgacaccgtc gagctcgccg
     4861 gccgcgtcga tctcattcgc gcgggtcttg cgcagatgca cgtcaccaag gcgcagattc
     4921 atcaactcgc agtaccgaac gcaatgattc caaaactcgt gcagcagatc cggcacgacg
     4981 caccgccggg aatcgcgccg gacgcatttc cgatcccgct tcccagttac atcggtgata
     5041 ttcgaatcgc cgatggcaaa gtcacgctct acaagaacgt ccaataatga aagtcttcaa
     5101 gaacttcgtc gcgggtgcat gggtcgagcc gtccaccggc aagtatttcg acaaccgtaa
     5161 tcctgctgat ctcaatgacg taatcggaaa gtttccgctt tcgaattcga ccgacgtcga
     5221 tcgcgctgtc gcaagcgcga agcgcggctt cgaattgtgg aaggccactc cagcgccaca
     5281 gcgtggtgac atcctgcgca aggccggcga cctgctcgtg gcacgcaagg aagagatcgc
     5341 cgacgcgatg acgcgcgaga tgggcaagcc gctcaccgag acgcgcggcg atgttcagga
     5401 aggtatcgat accgcctact acgcggcgac gatgggccgg cagctttccg gccgcactgt
     5461 tccgtccgag ctgcgcaaca aatgggcgat gagcttccgt cgcccgatcg gcgtcgcggg
     5521 gctgatctgc ccgttcaatt tcccgatggc aatcccgacg tggaagatgt ttcccgcact
     5581 cgtttgcgga aactccgtaa tcttcaagcc agcggaggat gtgccgcata ccggaacgct
     5641 gctcgtcgag atactgctcg atgccggact tccgccagaa gtgattcagc tgctgcacgg
     5701 aaccggtgaa gacgtcggtg ctccactggt cgagcatccc gatgttccgc tcatttcatt
     5761 taccgggtcg accgcgactg gcagcatcgt cggcgcaacg tgtggacgta tgcacaagcg
     5821 cctgtcgctc gagatgggcg gcaagaatgc ccagatcgtg ctggatgacg cggatctcga
     5881 ccttgcactc gaaggcgcgc tctggggtgc gttcggcacc acgggccagc gctgcacagc
     5941 gacgagccgt ctcatcctgc agaagggaat ccacgacaac ttcctcggca tgctggtcga
     6001 gcgcaccaag gcgctcaagc tgggcgacgg ccgaaagaag ggaaccgatg tcggccccgt
     6061 catcaacgaa gcggcgctcc ggaagatcga gcattacgtg gacatcgggc aggccggcgg
     6121 cgcagacatc gtgtgcggtg cgcagcgtcc gagcggcgat gcattcaagg acggcctttt
     6181 ctacgagccg acgatattca cgcgggtcga gccgacacag cgcatcgcct acgaggaaat
     6241 cttcgggccg gtgctgtccg tgatccgcgt ctcgacgccg gacgaggcgt tcgcggtgaa
     6301 caacgcggtc aagtacggcc tgtcgtcgtc cgtctacacg cgcgacgtca acatctcgtt
     6361 ccgggctcta caggagctcg acaacggcat aacgtacatc aacgccccaa cgatcggcgc
     6421 cgaggcacat ctgccctttg gaggggtaaa gcagacgggt aatggccatc gtgagggcgg
     6481 ctgggaagtg tatgatttct attccgagac caaggttggc tacgtcgatt attccggcac
     6541 gcttcagcgc gcgcagatcg atacttacct tgggacgccg gactagaacg acttcctgtt
     6601 gcatgtgagg gataattcgt cattcccgcg aaagcgggaa tccatgttat cgatcttatg
     6661 gatgcgatgg cagcggaagg tggtcggcag cagatggatt cccgctttcg cgggaatgac
     6721 gaggctgtgc agtgcgcctg gcacgacgcc tgagcgtcgg ttacacagag gtatactgaa
     6781 ctcgtgatgc gtggattcgt gcgagcgttt ttgcaactgg gagcgtccgt gctgctgttc
     6841 ctggtcacgc gcgcgctcgt tgtcgagatg tacaagatcc cgacaccgag catgcagcgc
     6901 acgcttctgg ttggtgattt tctcgtcgtc aacaagatgg tgtacggccc ggagcttcca
     6961 ttcaccaaca tcaagctgcc gggtatccgc cagccgcgcc gcggtgacgt gatagtcttc
     7021 aagtggccgt ccgacccatc gatcaacttc gtgaagcggg tagtcggcac tcccggcgat
     7081 acgctgctca tgcgtaatgg agtccttcag cgcaacgggc tgcccctcaa ggagagctac
     7141 gtcacccaca cgtccgccga cgctgacatg gccgtggacg agtttcgctg gcagcgggac
     7201 tatctggtga ggtcggcgca ggcgagcggg gcatactggc c
//
LOCUS       DATIMD010000055         4559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5507480, whole genome shotgun sequence.
ACCESSION   DATIMD010000055 DATIMD010000000
VERSION     DATIMD010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4559
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5507480"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..593)
                     /locus_tag="VLI40_01315"
     CDS             complement(<1..593)
                     /locus_tag="VLI40_01315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95836.1"
                     /translation="MFLGHYGVAFGAKRVAPDTSLGTLTFAAQFLDELWPILLLLGIE
                     QVRIQSHPATPGTALVFTSYPFSHSLAMAVVWGAVIGAIHYLLRRNRRAACIIAVVVI
                     SHWLLDFPVHTSDLPLWPGGSARVGLGLWNSVPATLILEFAIFGTGLLLYLRQTRARD
                     RVGSWGLWSLVLALLLIFASGYVAPPPPSPRAVAWSAL"
     gene            890..2221
                     /locus_tag="VLI40_01320"
     CDS             890..2221
                     /locus_tag="VLI40_01320"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF004126.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HSU95837.1"
                     /translation="MTTPGNTQSTDKTAGDLSITDKRTNKNYDLAIKDGAIRASDLRP
                     IKTADPDDVGLLSYDPAFMNTASCRSSITYIDGDKGILRYRGYPIEQLAEKASFLEVA
                     WLLRHGELPNQKEYDGFVHDITYHTYVHENIRNFLQGFRYDAHPMSMLQSSIAALSSF
                     YPEARNIFDVEQRNIAVIRLLAKTPTIAAFSYRHSKGLPVVYPDNSLSYVENFLSMIN
                     RMTEPRYEANPTFVRALEILFILHADHEQNCSTSSVRMVGSSHVDPFSAMSAGVAALF
                     GPLHGGANEQVLRMIEEIGTIQNVPAFIETVKSGSGKLMGFGHRVYKSYDPRAKIVKQ
                     LADSVFKITGVDRGLEIALELERIALQDDYFVSRKLYPNVDFYTGLIYRSMGFPTEFF
                     TVLFAIARMAGWLSQWEEMLLDKEQKIARPRQIFTGHAERQFKQTINVGIK"
     gene            2354..3046
                     /locus_tag="VLI40_01325"
     CDS             2354..3046
                     /locus_tag="VLI40_01325"
                     /inference="COORDINATES: protein motif:HMM:NF014373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
                     /protein_id="HSU95838.1"
                     /translation="MTVTITWYDIALRIGLTLIGSALIGINRGEHGHAAGLRTTMLVA
                     LAGALSMIEVNLLLGTVGKLRDSFVVLDLMRLPLGILTGMGFIGAGAILQRGNRVSGV
                     TTAATLWLVTVIGLCFGGGQLALGSIAVVLAMFVLWTLKTVDRKWLQDNRATLTIRAS
                     RDTDVADVARDLAETGYTVSTDTLTLAATDGYVESQLDLRWRGAKVGQEPPPLLASLA
                     RRDGVLSVDWRR"
     gene            complement(3087..3515)
                     /locus_tag="VLI40_01330"
     CDS             complement(3087..3515)
                     /locus_tag="VLI40_01330"
                     /inference="COORDINATES: protein motif:HMM:TIGR03562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family peroxiredoxin"
                     /protein_id="HSU95839.1"
                     /translation="MPTRKASAVWEKGLQNGKGSFKGESGTVSGNYSFGSRFENASGS
                     NPEELLAAAEAACFSMALALGLEKNGTPAEKVETNAACTIEKAGDGFKISTMSLLVNA
                     KVPGIDNAKFQQIAQATREGCPVSQALKGNVNITLTANLT"
     gene            3834..4478
                     /locus_tag="VLI40_01335"
     CDS             3834..4478
                     /locus_tag="VLI40_01335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95840.1"
                     /translation="MFAYRPSRRAFVTHIAALAGASALLPDASFASSPVDPGDEPEAW
                     LKALTGKHRQLFHAHDKWTKGIEYSIRYKTAYPTEYGVAPDDVNAVLAAHGKTGVTTY
                     VDAAWEKYGFGKMFDVKDPKTKDVATRNVYYAGDDDNPGIREALSAGVVVLSCRTALR
                     GIASELADQKKFGSKEEIEKDLTASLIPGVILVPAMIIAVGRAQEQRCNYVYTG"
BASE COUNT          918 a         1336 c         1412 g          893 t
ORIGIN      
        1 agtgcgctcc acgctacggc acgagggctc ggcggtggcg gtgcgacata tccgctggcg
       61 aagatgagca gcaaggccaa tacgagcgac cacagccccc agctgcccac gcggtcgcgt
      121 gcacgtgtct gccgaaggta cagcagcaaa ccggtcccga atattgcgaa ctcgagaatc
      181 agggttgctg ggaccgagtt ccagagcccc aatccgacgc gtgcagaacc ccctggccag
      241 agcggcagat cgctggtgtg tacgggaaag tcgagcaacc agtggctgat caccacaacg
      301 gcgatgatgc aggcggcgcg gcgatttcgg cgcagcaggt aatgaatcgc gccgatgact
      361 gcgccccaga ccaccgccat ggcaaggctg tgcgagaacg gatacgacgt gaacaccagc
      421 gcggtgccgg gcgtggccgg atgggattga atccggacct gctcgattcc cagaagcagg
      481 aggattggcc atagctcatc gaggaattga gcggcaaatg tcagcgtccc gagcgacgtg
      541 tctggcgcaa cccgtttggc tccaaacgca acgccgtaat gcccaagaaa cattgttacg
      601 agttccaggc cgtttatgtg atgctcctgc gatgcaatcg caggggcagt caggaacacc
      661 aattgcgatc cgctcgtcca aaatacaagc cgcgccacca actgccaggg actctgacgg
      721 aatcctgaaa aacgtagcga gcgatgccac acgatgtgcc cggtagggcc gactgtgcga
      781 gtagccgatg ccgggtcaga tggtcatcag atggtcatcg gcgttttcga tgcagagatc
      841 acccgctaga tttcgcatcg aaacccctac caagaacggc tcatccgaga tgaccacacc
      901 cggaaacact cagtccacag acaagaccgc tggcgatctt tcgatcaccg acaagcggac
      961 caacaagaac tacgaccttg cgatcaagga cggagcgatc agagcctccg atctgagacc
     1021 gataaagacg gccgatcctg acgacgttgg tctgctgtcg tacgatccgg cgttcatgaa
     1081 cactgcctcg tgtcgcagct cgatcaccta catcgatggc gacaagggaa ttctgcgcta
     1141 tcgcggatac ccgatagagc agctggccga gaaggcgtcg tttctggagg tggcgtggct
     1201 gctgcgtcac ggagagctgc cgaatcagaa ggagtacgac ggattcgtgc acgacatcac
     1261 gtaccacacg tacgtgcacg agaacatccg caacttcctg cagggctttc gatacgacgc
     1321 gcatccgatg tcgatgctgc agagctccat cgccgcactg tcgtcgttct atcccgaagc
     1381 gcgcaacatc ttcgacgttg aacagcgcaa catcgccgtg atccggttgc ttgcaaagac
     1441 accgacgatc gcggcttttt cgtatcgcca ctccaagggt ctgccggtcg tatatcccga
     1501 caactcgctg tcgtacgtcg agaactttct ctcgatgatc aaccgtatga cggagccgcg
     1561 ctacgaggcg aatccgacct tcgttcgcgc actcgagatc cttttcattc tgcacgcgga
     1621 ccacgagcag aactgctcga ccagctcggt tcgcatggtg ggctcgtcgc acgtcgatcc
     1681 attctcggcg atgtcagctg gagtcgcggc gctattcggt ccgctgcacg gcggcgcgaa
     1741 cgagcaggtg ctgcgcatga tcgaggagat cggcaccatc cagaacgtgc ctgccttcat
     1801 cgagaccgtg aagagcggaa gcggcaagct gatgggcttt ggacaccgcg tgtacaagag
     1861 ctacgatccg cgcgccaaga tcgtgaagca gctggcggac agcgtcttca agatcacggg
     1921 cgtcgatcgc ggcctcgaga tcgcgctgga gctggagcgc atcgctcttc aggacgatta
     1981 cttcgtgtcg cgcaagctgt atccgaacgt cgacttctac accggactca tctatcgctc
     2041 gatgggattc ccgacggaat tcttcaccgt gctgttcgcg atcgcgcgca tggcgggatg
     2101 gctgtcgcag tgggaagaga tgttgctgga caaggagcag aagatcgccc gcccgcgaca
     2161 gatctttacc ggccacgccg agcgtcagtt caagcagacg atcaacgtcg gcatcaagta
     2221 gaaaccggtt cggcacgagc tgaaatgacg ggcgcgccgg aaaatcggcg cgcccgttcg
     2281 attaatatcc cgtttacatc gcggtttttg tcgtagtcgc atttccactc tactgcgtga
     2341 ggtgtggata gccgtgacgg tcacaataac ctggtacgac attgcgctcc gcatcggtct
     2401 gacgctcatc ggcagcgcgc tgatcgggat caatcgcggc gagcacggtc atgcggccgg
     2461 tctcaggacg acgatgctgg ttgcgctggc tggcgcgctc agcatgatcg aggtgaatct
     2521 cctgctcggc acggtgggca agctcaggga ttcgttcgtc gttctcgatc tcatgcgcct
     2581 tccgctcggc attctgactg gaatgggctt catcggtgcc ggcgcgattc tgcagcgcgg
     2641 caacagggta agcggtgtca ctaccgctgc gacgttgtgg ctggtgaccg tgatcggtct
     2701 ctgctttggc ggcggtcaac tcgcgctggg ctcgatcgcc gtcgtcctcg cgatgttcgt
     2761 tctgtggaca ctcaagacgg tggaccgcaa atggctgcag gacaatcgtg cgacgctgac
     2821 cattcgtgcg tcgcgcgata cggatgtggc cgatgtcgcg cgcgatctcg ccgagacggg
     2881 ctacacggtg agcaccgaca cgctgactct cgcagcgacc gacggttacg tcgaatcgca
     2941 gctggatctg cggtggcgcg gagcgaaggt ggggcaggag ccgccaccac tgctcgcatc
     3001 gctcgcaagg cgggatggag tgctgtcggt ggactggcgc cgctgacgca aaggatctgt
     3061 cacgcggcgc acagtccgat gccgcatcag gtgaggtttg cggtcagcgt gatgttcacg
     3121 tttcccttca gcgcctgcga gacgggacat ccttccctgg tggcctgggc gatctgttga
     3181 aacttcgcgt tgtcgattcc cggcaccttc gcgttcacca gaaggctcat cgtgctgatc
     3241 ttgaagccgt caccggcctt ttcgatggtg caggcggcgt tcgtctcgac tttctcggcg
     3301 ggcgtgccgt tcttctcgag tcccaaggcc agtgccatcg agaaacaggc ggcctcggcg
     3361 gctgcgagca gctcttccgg attggatccg gaggcgtttt cgaagcggga gccaaatgag
     3421 tagttgccgc tgaccgttcc gctctcgccc ttgaacgatc cctttccgtt ctgcagaccc
     3481 ttctcccaga ccgcgcttgc cttgcgtgtg ggcatttctt tctccgttga tggtgatgtg
     3541 atgcagtcta gtgaatcgtc gcatgatgtg cgccgcggac gcgtcggcgt ccgtcgctac
     3601 tccgtcccga tcctggcact tagcgaattc acacggagtc cgtccctact ccgtccccgc
     3661 tccgtcccgg gtccggccct gctctggccc cggcaatggt aatcgccatc gagcgggcgc
     3721 agaagcaggg ctgtgcgtat cggttcacag gctgaccgcg ccggcgagca gccgattccg
     3781 ctcgtagatt tgcggccata gatgcttttc cgcaaaccag attcggagtc gtaatgttcg
     3841 cgtatcgccc gagccgcagg gcttttgtca ctcacatcgc agcacttgct ggcgcaagtg
     3901 cactactgcc ggatgcgtca ttcgcaagct caccggttga tcccggcgac gagccggaag
     3961 cctggctcaa ggcacttacg ggtaaacacc ggcagctgtt ccacgcgcac gacaagtgga
     4021 ccaagggaat cgaatactcg atacgctaca agacagcgta tcccacggaa tacggagtcg
     4081 cgccggacga tgtgaacgcc gtgctcgcgg cgcacggaaa aacaggtgtg acgacgtacg
     4141 tcgacgctgc gtgggagaag tacggtttcg gaaagatgtt cgacgtaaag gatccgaaga
     4201 ccaaggatgt cgctacacgg aacgtgtatt atgccggcga cgatgacaac ccgggaatac
     4261 gcgaggcgct gtctgcggga gtggttgtgc tgtcgtgccg gactgcgtta cgcggaatcg
     4321 cgagcgagct ggcggatcag aagaaattcg gcagcaagga agagatcgaa aaggatctga
     4381 cggcgtcgtt gattccgggt gtgatactgg tgcctgcgat gatcattgcg gttggacggg
     4441 cgcaggagca gcgttgtaat tacgtgtata cggggtgacg gtaaagcggt ggtgtcactt
     4501 gcaatccgtc attcccgcga aagggcggcg gactgtcgtc attcccgcga acgcgggaa
//
LOCUS       DATIMD010000056         6364 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3197436, whole genome shotgun sequence.
ACCESSION   DATIMD010000056 DATIMD010000000
VERSION     DATIMD010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6364
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3197436"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1844
                     /locus_tag="VLI40_01340"
     CDS             <1..1844
                     /locus_tag="VLI40_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HSU95841.1"
                     /translation="DSLEKALEAIAVIDRKLMIPMRDGKKMQFDVYRPKNVAKAPAIF
                     SRTPYNMNYWDVKLGAPADMSAQLEAVKRGYAYVMANERGHFFSEGNYDILGPPLTDG
                     VDEIQWISSQPWSNGKVGLVGCSSTAEWQMGVAAQAPKGLAAINPQGFGAGVGRVKPY
                     YEQGNWYRGGAVQMLFIDWLEGEQNQVRPMFPSNTSQADLIRAARGFDLADELPPVDW
                     KANFWHLPEQDLIEDHGGPHGIFADSMPVATGGAMIKRTPNDPAWYRGGLFNDSMKIN
                     VPGLWFMSWYDVSIGPNLATYNYVRKTADPAIANQQYAVIAPTLHCSYTRATENTIVG
                     ERSVGDARLDYNALTYGWFDTFLKGEKTGLLDTLPKVRYYVMGINKWQTSDSWPPKGA
                     SPMTFYLSSNGKANTLNGDGMLTMAAPSKDTPDNFTYDPMHPVMSNGGNVCCQANALT
                     GGALDQRKAEENDGILVYTTEPLKEGMEVSGPIQFTTYVSSDRKDTDITVKIIDVYPD
                     GRAYNLDETIQRLRYRNGYDKPVEWMQPGKVYKVALQPMTTSNYFEAGHRIRIEVSSS
                     NFPRFDRNLNTGGDNYSETQSLVAHNSVHHSRQYPSSLTITVVKPKK"
     gene            2055..3014
                     /locus_tag="VLI40_01345"
     CDS             2055..3014
                     /locus_tag="VLI40_01345"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95842.1"
                     /translation="MTAGSHLRGITSAGLIAGLIVAASSVAPSATMSQGAPQGGGGIA
                     PAMREANQLDLKGETAQARVIFQKIIDTASVPASKAAAQRAMAMSYAFDGDCANTVKY
                     ESMVIDYWKTREQAEPQNAFYQEGEMANEAARVCIDAGDLAAADQWYRKGYELGVKEP
                     APQTHPRSLWDYRLAHALGRLAARKGDKAEAERQITKARQLLDSDTTMAAQQERFFPY
                     LVGYVALYTNDLATAEAQLSKAVAMKGNERDPFMHCLLGMTYERMGRQSDADAMYRKA
                     YDMATGHNPPAAFVRPFVRKKLGANAVAEGSEKSVVTSSVTRP"
     gene            3177..3701
                     /locus_tag="VLI40_01350"
     CDS             3177..3701
                     /locus_tag="VLI40_01350"
                     /inference="COORDINATES: protein motif:HMM:NF016408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HSU95843.1"
                     /translation="MAIWKEQTSGKKDSSPLSLTPDPEVQPQTSADLPPANEPVRRNP
                     SPSVTPERKNAESVISAGLSIEGTITGNGDVRIAGQFKGDVNVQGSLTIETGAKLVGG
                     VRASNVVIDGELEGNIEGATRVELRSTGVLNGNLNTGSLTVAAGSRMRGQVEFGWSKE
                     GPQRTDMAAGRSIA"
     gene            3712..4056
                     /locus_tag="VLI40_01355"
     CDS             3712..4056
                     /locus_tag="VLI40_01355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95844.1"
                     /translation="MSTVNQRTPGKTRSCPHCRATILESANVCPGCRHHVRSGASSSE
                     SVFPSFTALKVDGTIKPPAADQVWEYSMVVSIRNERGEEVARQIVGVGALVASETRTF
                     TLAVEVFKPDGR"
     gene            complement(4065..4367)
                     /locus_tag="VLI40_01360"
     CDS             complement(4065..4367)
                     /locus_tag="VLI40_01360"
                     /inference="COORDINATES: protein motif:HMM:NF022815.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3175 domain-containing protein"
                     /protein_id="HSU95845.1"
                     /translation="MAHKSTAKKQSTRRWSGSVTKHSNALDLDKDVFTWKSPHRIAVS
                     LKRSAEHSHRRKGTPYQSAMSMLTFYINRAGDNLSAHQRDVLEKAKDELRKEFGRE"
     gene            4481..5893
                     /locus_tag="VLI40_01365"
     CDS             4481..5893
                     /locus_tag="VLI40_01365"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSU95846.1"
                     /translation="MRIPQAFAAVVLFGSTVLGAVSGNAQSGPADPQLAGQIDSIASA
                     GLASSGVPSASIAVVRHGEIVYAHAYGSAKLSPSVAATPDMRYGIGSISKQLTAATVL
                     LLQQDGKLSLDDHVSRFVPGLTRGNEVTIRELLSHTSGYQDFWPQDYVPPLMQKPISA
                     QGILDRWAKQPLDFDPGTKWQYSNTNFVIAALIVEKASGIPFFQFLQSRILDPLSMKS
                     AIDFDAKGPSSVQPIGYMRYALGPLRPATSTGPGWMAGAGELAMTASDLARWDIAMIK
                     QSLLAPQSYKAMETTVLLRDGVSSGYGLGVDVGTMNGHRVIEHNGEVAGFTGENIVFP
                     DDSVAVVVLTNQDAARADGVIASQIAQVLFATQDATEAKHTALARDIFEGLQRGTINR
                     SLFTDDANAYFNTQAILDFTSSLAPLGAPTEFVQISQTNRGGMVERVYRAKFATRTLR
                     VWTYEMPDGKLEQYQVAPMG"
     gene            6012..>6364
                     /locus_tag="VLI40_01370"
     CDS             6012..>6364
                     /locus_tag="VLI40_01370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95847.1"
                     /translation="MFGFPAPRRASIIAWCLPVVIVATLFISSSAQSSATVATSPHSS
                     DWRANIRAFAESHLQHTAWGPAHGRRDYEMTLSLARAEGVTVDDDALYAAAYLHDMGG
                     IPPYAKAGVDHGDRS"
BASE COUNT         1311 a         1736 c         2126 g         1191 t
ORIGIN      
        1 gcgactcgct cgaaaaggcg ctcgaggcca tcgcagtcat cgatcgcaag ctgatgatac
       61 cgatgcgcga cggcaagaag atgcagttcg acgtgtaccg tccgaagaat gtggccaagg
      121 cgccggcgat tttcagtcgt actccgtaca acatgaatta ctgggacgtc aagctcgggg
      181 cgccggccga catgagtgcg cagctcgaag cggtgaagcg cggctatgcg tacgtgatgg
      241 cgaacgagcg cgggcacttc ttctcagaag gtaactacga cattctggga ccgccgctga
      301 ctgacggcgt ggacgagatc cagtggatat cgtcgcagcc gtggtcgaac gggaaggtcg
      361 gcttggtggg atgctcgtcg accgcggaat ggcagatggg tgttgccgct caggcaccga
      421 agggactcgc ggcgatcaat ccgcagggat tcggtgccgg tgtgggacgc gtgaagcctt
      481 actacgagca gggtaactgg tatcgcggcg gtgcagtgca gatgctgttc atcgactggc
      541 tcgagggtga gcagaatcag gtgcggccga tgttcccatc caacacgtca caggctgacc
      601 tcattcgtgc ggcgcgcgga ttcgatctcg ccgacgagct gccgccagtg gactggaagg
      661 caaacttctg gcatttgccg gagcaggacc tgatcgagga tcatggcggt ccgcacggga
      721 tcttcgctga ttcgatgccc gttgcgaccg gtggtgcgat gatcaagcgc acaccgaacg
      781 accctgcgtg gtatcgcggc ggactgttca acgacagcat gaagatcaac gtgccgggac
      841 tgtggttcat gtcgtggtac gacgtgtcga tcgggccgaa tctcgcgacg tacaactacg
      901 tgcgcaagac ggcagatccg gcgattgcga accagcagta cgcggtgatc gcgccgacgc
      961 tgcattgctc gtacacgcgc gcgacggaga acacgatcgt tggagagcgg agcgttggcg
     1021 atgcacgtct cgactacaat gcgctgacgt acggctggtt cgacacgttc ctcaagggtg
     1081 agaagacggg cctgctcgac acgctgccca aggtgcgcta ctacgtgatg ggcatcaaca
     1141 agtggcagac gtcggactcg tggccgccga agggagcgtc gccgatgacg ttctatctgt
     1201 cgagcaacgg aaaggcgaac acgctgaacg gtgacggtat gcttacaatg gctgcaccat
     1261 cgaaggacac gccggacaac ttcacgtacg atccgatgca tccggtgatg tcgaacggcg
     1321 gcaacgtgtg ctgtcaggcg aacgcgttga ccggtggtgc gctggatcag aggaaggccg
     1381 aggagaacga cgggatactg gtgtacacga cggagccgct caaggaaggg atggaagtga
     1441 gcgggccgat ccagttcacg acgtacgtgt cgtcggacag gaaggacact gacatcacgg
     1501 tcaagatcat agacgtgtat cccgacggac gtgcgtacaa tctggacgag acgatccagc
     1561 gtctgcggta tcgcaacggt tacgacaagc cggtggagtg gatgcagccg ggcaaggtgt
     1621 acaaggttgc gcttcagccg atgacgacga gcaattattt cgaggctggt catcgcattc
     1681 gcatcgaggt gtcgagcagc aactttccgc gcttcgatcg caacctgaat acgggcggcg
     1741 acaattacag tgagacgcag agtctggtgg cgcacaacag cgttcatcac tccaggcaat
     1801 atccgtcgtc gttgacgatt actgtggtga agccgaagaa gtagcgcggc aaaggagatc
     1861 tttgaatcgg gcgaggatgc aggtgcatcc tcgcccgatt tgcgtatccg ggggccgtcg
     1921 gcgcgtcgaa tagtcgtggc tcggcactag cgagaagcat ggtacgaagg cgaacatata
     1981 gccggaggag gagtatcagc aaaacgtcga gcgccggaag attcggcgct ccccatcagc
     2041 gaaggagaac tgtcatgacc gcaggatctc atctccgtgg catcacgtca gccggcttga
     2101 tcgcgggttt aatcgtcgca gcatcatcgg tcgcgccgag cgcgacgatg tcgcagggtg
     2161 ctcctcaagg cggaggcggg atcgcaccgg cgatgcggga ggcgaaccaa ctcgatctga
     2221 aaggggagac ggcgcaggcg cgcgtgatct ttcagaagat catcgatacg gcgagcgtac
     2281 ccgcctcgaa ggcagccgca cagcgcgcga tggcaatgtc gtacgctttt gatggtgatt
     2341 gcgcgaatac ggtgaaatac gaatcgatgg tgatcgatta ctggaagacg cgggagcagg
     2401 ctgagccgca gaacgcgttc tatcaggaag gcgagatggc gaacgaggcg gcgcgggtgt
     2461 gcatcgacgc cggtgatctg gccgccgcag atcagtggta tcgaaagggt tacgagctcg
     2521 gcgtgaagga gccggcgccg cagacgcatc cacgcagtct ctgggattac aggctcgcgc
     2581 acgcgctggg ccggcttgcc gcacggaagg gagacaaggc cgaggcggag cggcagatca
     2641 cgaaggcgcg ccagctactc gacagtgaca cgacaatggc ggcacagcag gagcgtttct
     2701 ttccgtatct ggtcggttac gtggcgttat acacgaacga cctggcgacc gccgaggcgc
     2761 agctcagcaa ggcggtcgca atgaaaggga acgagcgcga tccgttcatg cactgtctgc
     2821 tggggatgac ttacgagcgg atgggcaggc agagcgatgc tgacgcgatg tacaggaagg
     2881 cttacgacat ggcgacggga cacaacccac ccgctgcctt tgtacgaccg ttcgtgcgaa
     2941 aaaagctagg ggcgaacgct gttgccgagg gctcggaaaa gagcgtggta acgagctccg
     3001 taacgcggcc gtaaacaaat tttcggcggc ctattccctg atgctgtgca ggggagtaaa
     3061 aatagtggtg cattctgtgc aggcaggacg caccgcggca gtgaccgcgt gctggcgccg
     3121 tcgtccacgg tagtcaacag tcgaagcaca tatccatcaa tcaggagcat cgcaccatgg
     3181 caatctggaa ggaacagacc tcgggcaaga aggattcatc accgctgtcg ttgacgccag
     3241 accccgaggt ccagcctcag acgtccgccg atctcccgcc agcgaacgag ccggtgcggc
     3301 gcaacccgag cccaagtgtc actccggagc ggaagaacgc cgagtccgtg atctccgcgg
     3361 gactctcgat cgaggggacg atcacgggta acggagatgt gcgcatcgcc ggtcagttca
     3421 agggcgacgt gaatgtgcag gggagtctca cgatcgagac tggcgcaaag ctggttggcg
     3481 gcgtgcgcgc gagcaacgtc gtgatcgacg gcgagctcga gggcaacatc gaaggggcga
     3541 cacgcgtcga gctgcgatcc acgggcgtac tgaacggcaa cctcaacacc gggtcgctca
     3601 ctgtcgcggc gggatcgcgc atgcgtgggc aggttgagtt cggctggtcc aaggaagggc
     3661 cacagcgcac ggacatggcg gcaggacgca gcatcgcgtg agtagcagta cgtgagtacg
     3721 gtgaatcaac ggacgccggg aaagacgcgc agttgcccgc actgcagggc gacgatcctc
     3781 gaaagcgcca acgtctgtcc cggctgccgg caccacgtgc gctcgggtgc gtcgtcatcc
     3841 gaaagcgtgt ttccgagttt caccgcgttg aaggtggacg ggacgatcaa gccgcctgcg
     3901 gcggatcagg tgtgggagta ttccatggtc gtctcgatcc gcaacgagcg tggtgaggaa
     3961 gtcgcgcgcc agatcgttgg cgtgggagcg ctggtggcgt cggagacgcg gacgtttacg
     4021 ttggccgtgg aagtgttcaa gccggacggg cggtagggga ttcgtcattc ccgtccgaat
     4081 tccttgcgca gctcgtcctt tgctttttcc aacacgtcac gctggtgcgc gctcaggtta
     4141 tcgccggcgc ggttgatgta gaaggtcagc atcgacattg cggactggta cggtgttccc
     4201 ttccggcgat gactgtgctc ggcggaacgc ttgagcgata cggcgatcct gtggggactc
     4261 ttccatgtga atacgtcctt gtcgagatcg agggcgttgc tgtgtttggt cacggagccg
     4321 gaccagcgtc tggtcgattg cttcttcgcg gttgatttgt gtgccatggg gcctcccggg
     4381 cgaagaggtc gctattaccg tgccgccatc tggcgttgcg gccgtatctt tggcatgctt
     4441 gtgactggca ggagagtccc gaccttcacc acgcgtccac atgcgcatcc ctcaagcgtt
     4501 cgctgcagtc gtactgttcg gtagcactgt tctcggagcc gtatccggca acgcgcaatc
     4561 gggtcccgcg gatcctcaac tcgctggaca gatcgactcc atagcatcgg cggggcttgc
     4621 aagcagcggt gtgccgagtg cgtcgattgc ggtggttcga cacggagaga tcgtgtatgc
     4681 gcatgcgtac ggatcggcga agctgtcgcc gagtgtcgca gcgacgccgg acatgcgtta
     4741 cggcatcggg tcgataagca agcaactgac ggcggcgacc gtgcttctgt tgcagcagga
     4801 cggcaagctg tcgctggacg atcacgtgtc gcggttcgtg cccgggctca ctcgcggaaa
     4861 cgaggtgacg attcgtgagc tgctgtcgca cacgtccggt tatcaggatt tctggccgca
     4921 ggattacgtg ccgccgttga tgcagaagcc gatctcggcg cagggaattc tggatagatg
     4981 ggcaaagcag ccgctggatt tcgatcccgg cacaaagtgg cagtacagca acaccaactt
     5041 tgtgattgct gcgctgatcg tggagaaggc gagcggcatt ccgttcttcc agtttctgca
     5101 gagcaggatt ctcgatccgc ttagtatgaa gagcgcgatc gatttcgacg cgaagggacc
     5161 gtcgtcggtg cagccgatcg gttacatgcg ttatgcgctt ggtccattgc gcccagcgac
     5221 atcgacaggg cccgggtgga tggcaggcgc aggcgagctt gcaatgaccg ccagcgatct
     5281 tgcgcgttgg gacatcgcga tgataaagca atcgttgctc gcgccacaat catacaaggc
     5341 gatggagact acggtgctgc ttcgcgatgg agtcagcagc ggatatggac tcggcgtcga
     5401 tgtcggcaca atgaacggac atcgagtgat cgaacacaat ggcgaggtgg cgggattcac
     5461 gggcgagaat atcgtcttcc cggacgacag cgttgccgtg gtggtgctca cgaaccagga
     5521 cgctgcgcgc gccgacggcg tgatcgccag tcagatcgcg caagtgctgt tcgcgaccca
     5581 ggacgcgaca gaggcgaagc acacggctct cgcacgcgac attttcgagg ggctgcaacg
     5641 cggtacgatc aaccgttcat tgttcacgga cgacgcgaac gcgtacttca atacgcaggc
     5701 gatactggat ttcacgtcca gtctcgcgcc acttggcgca ccaacggagt tcgtgcagat
     5761 atcccagacc aatcgcggcg gtatggtcga gcgtgtctat cgcgcgaagt tcgcaacgcg
     5821 cacgttacgt gtctggacgt atgaaatgcc cgatggcaag ctggagcagt atcaggtcgc
     5881 accgatgggg tgatctgtgg cattctgtgc cttaccattc acctgtttgc ccgtacattt
     5941 cggggtggta gtgggtacgt tgactcacgc cgggttcctg tcccctccga acgctcagca
     6001 gtgagtcgtg catgtttggg tttcccgcac cgcgtcgcgc cagcatcatc gcatggtgtc
     6061 tgccagtcgt aatagttgcg acgctattca tatcgtcatc cgcgcagtca tcggcaactg
     6121 ttgcaacatc gccgcattca tctgactggc gagcgaacat tcgcgcgttt gccgagtcgc
     6181 atctgcaaca caccgcgtgg ggaccggcac acgggcggcg cgactacgag atgacgcttt
     6241 cgctggcgcg cgcggaaggt gtaacggtgg acgacgatgc gttgtacgcg gctgcgtatc
     6301 tacacgacat gggtggtatc ccgccgtatg caaaggctgg cgtggatcat ggtgaccgct
     6361 cgat
//
LOCUS       DATIMD010000057         7034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3775485, whole genome shotgun sequence.
ACCESSION   DATIMD010000057 DATIMD010000000
VERSION     DATIMD010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7034
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3775485"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..630)
                     /locus_tag="VLI40_01375"
     CDS             complement(55..630)
                     /locus_tag="VLI40_01375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95848.1"
                     /translation="MAKLDMDARAGGPEEWATVLDKLLLGVTHNISNRVATLAGVSDI
                     LSGDPTIPPILRALADEVPRLEESIRLLRLLAEPDDEQEEALEATRATDDAIALARLH
                     PACLNVRFEIKGRREAPPVIARPTALTHEIVVALVSAASAVVVADFDGDTGGLATSAQ
                     IQIAFSSDANDLLISAGPSVVRARLLSARRD"
     gene            709..1566
                     /gene="motA"
                     /locus_tag="VLI40_01380"
     CDS             709..1566
                     /gene="motA"
                     /locus_tag="VLI40_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HSU95849.1"
                     /translation="MFVIIGLVVVFGSILGGFIMEHGKVAALIQISEFVVIGGAAFGS
                     MVVGNPPALIKRVFGNVFGLLKASPYTEKAYGELLQLLYDVFQKARKEGLIGLEAHIE
                     DPEKSDIFNKYPSVAKNHHAVAFLTDTLKVLLTGAVEDHHLAEILDLDLERQHEEAML
                     VPGALNRVGDAMPGFGIVAAVLGVVITMGSIGGAASEIGEKVAAALVGTFLGILLSYG
                     VVGPIASAVETRIRAEEAYMMSIRTALLAFARGDSPMTAVEFARRNIEPGDRPSFSEL
                     ENLTRRRAA"
     gene            1580..2419
                     /locus_tag="VLI40_01385"
     CDS             1580..2419
                     /locus_tag="VLI40_01385"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HSU95850.1"
                     /translation="MPGKEKQIIRIVKKKKGHAAHHGGSWKVAYADFVTAMMAFFMVM
                     WLLSMDQKMKDAIEGYFSNPVGFKKGFSAGTNIISSGNSPAGEVKPPLRILIRRAEEK
                     KFGDLAKDLRSRLNGSPDLRALGAHIETVRTKSGLRIELIESGSGQTFFRNGSAEPLP
                     ITVAALRLIGAELSRLQTPIIIEGHTDSQQFGSSASYTNWELSSDRANAARRLVQEAG
                     VDPSRIVEVRGMADRDLRVPSNPMDPANRRISILLPFTVLPGEPDPAEPLSGDAEIVK
                     RSS"
     gene            2497..4515
                     /locus_tag="VLI40_01390"
     CDS             2497..4515
                     /locus_tag="VLI40_01390"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSU95851.1"
                     /translation="MHILYKERTAMPDPTYTREQEFEDVQRALAGQYSLHRELGRGGM
                     GIVYLAREVELDRFVAIKVLPAALALRADMRERFMREARASARLSHPNIVPIFRVGER
                     NGVAFFSMAYVDGESLGERLRARGVLPAREVTRILRDASWALAYAHAQGVVHRDVKPD
                     NILIERDSDRVFVTDFGIAAVEDAATAITGAHEIVGTAQYMSPEQASSGAIDGRADLY
                     SLGIIGFLAITGRLPFDGRTAAVVIAKQVSEPAPSIARETGVPPHLASVIDRVLRKDP
                     AERFPNGEAMAEALSESTVATRRLPPALRLWVDNRDPMRVPYSAWSFAFGFGAVLTIV
                     RGNSGWLPLIGMAALPLIPHLIFRARQTRRVLSAGHGVEDMQFALAEVNERRREEMSI
                     ELHEGQTPALKFLRVITTAVVVADVGLVIGMQSVSNAFLKTLYQHHTIAMRAGFAAAV
                     LLPLILIPMSMALGVPLLGRRFKNFNSGTLRERLWNSRIGTAVAKWLRPKNTQPAAAF
                     VSQPTEVALGSAAGSLFTALPQTVRDQFPELPSVVSGLEAHAAKCRARIQELDRLYND
                     AMNDTAISRLRGTDPLSDDTSISAQRKQTVDELDAARGIARADLAHTVAALESIRLDL
                     LKMHAGGDASRQIATSIEAARELKHGLELALSAKREVSSILRPTVLEE"
     gene            complement(4542..5171)
                     /locus_tag="VLI40_01395"
     CDS             complement(4542..5171)
                     /locus_tag="VLI40_01395"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95852.1"
                     /translation="MSHKRAITHLRKADPKLAAVIDSVGPCTFEPAEHMAHFTAITRS
                     IVFQQLSGKAASTIYNRFAALFDDDMPVPLKLIELSDEQLRAVGLSRQKIGYLRDLAT
                     RVHTGEVPIDSLDELSDDDIIAALTSIKGIGRWTAQMFLMFRLGRPDVLPDLDLGIQK
                     GIQRAYRMRKLPTPKRVLEVGAKWAPHRTIAAWYLWRSLDATAESRQGK"
     gene            5381..6922
                     /locus_tag="VLI40_01400"
     CDS             5381..6922
                     /locus_tag="VLI40_01400"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HSU95853.1"
                     /translation="MTISLRSAIPALLCAAGYAGLAGLAGAQGTPAAAPAASACEPGA
                     SQAVAKATLFLQQAAASVNAKQDATKPLKLAITALTTPSKDAKDAADSVGRAYYLGQA
                     YILMLQQAGVPASGPRSTYGIATQPTGNIDLLAAADSAFTTVEKAQPGCASEINQWRE
                     QKPWLESVNNAIAALNAEHYDSAEVYAKRALTIDRRAPYAYTVLASVASNKKDYTTAT
                     TMLRKAIEAASADTIYNDAKQNAMYDLANTLSTQYDAATGADKATIGKQAIAAWEAYV
                     PVGTMDARVGRAQALASQIALAIKDTTEYAKIYAPVAANPAKYGDQALLNAGVIATQA
                     DKPDDAIKLFSAVVERNPYQRDALKNLAASYVGAKQPEKVAPVVDKLVALDPNSASNW
                     LLYAYGYSGLLKETKDPKLTKAYTDSLVKYNTKSEKITPNVEIQQFAVDSAAKSATLS
                     GTIENRGTAAKSYTMTVEFLDKSGTVVGTQSVTVGPVAPKATAPFKAAAQASGVAGYR
                     YKPIV"
BASE COUNT         1387 a         1999 c         2270 g         1378 t
ORIGIN      
        1 ataaatcaga tggaatccgg tcgagttcgg attccatctc gcctcaatct cgcctcaatc
       61 ccgccgggcg ctgagtaagc gcgctcgcac cactgatggt ccggcagata tcagcagatc
      121 attcgcatcg ctcgaaaacg cgatctgaat ctgcgcggat gtggccagcc cgccggtgtc
      181 tccgtcgaag tcggccacga ccacggccga ggcggccgac accagcgcga cgacgatttc
      241 atgggtgagc gcggttggtc gcgctatgac gggcggagct tcccgccttc ccttgatctc
      301 gaaacgtacg ttcagacagg ccggatggag ccttgcaaga gcgattgcat cgtcggtcgc
      361 tcgcgtcgcc tcgagcgcct cctcctgttc atcgtcgggc tcggccagca gccgcagtag
      421 tcgaattgac tcctccagcc tcgggacttc gtccgccagc gcccgcaata taggcgggat
      481 cgtcggatcg ccagacagaa tgtctgaaac tccagcaagc gtagctacgc gattgctgat
      541 gttgtgggtg acgccgagta gcaatttgtc gagcaccgtg gcccactctt ccgggccacc
      601 ggcgcgggca tccatgtcca gttttgccat ctgttcgccg atactgacac ctatgcgaag
      661 aacttgggcc agttacacgc tggctgacgg aagtcaggaa agatacgcgt gttcgtaatc
      721 attggtttgg tagtcgtatt cggcagcatc ctcggcggat tcataatgga gcacggcaag
      781 gttgccgcgc tgatccagat atctgaattc gtagttatcg gaggcgccgc attcggctcg
      841 atggtcgtcg gcaacccgcc ggcgctcatc aagcgcgtat tcgggaatgt gttcgggctt
      901 ctcaaggcga gcccgtacac ggagaaggcg tacggtgagc tgctgcagct gttgtacgac
      961 gtcttccaga aagcgcgcaa ggaaggcctg atcggccttg aagctcatat cgaagatccg
     1021 gaaaagtccg acatcttcaa caagtaccca tcggtcgcga agaatcatca cgcggtcgcg
     1081 tttctcacgg acacgctcaa ggtgcttctc accggtgcgg tggaagacca tcacctcgcg
     1141 gaaatcctgg atctcgatct cgagcgccag catgaggaag cgatgctcgt gccgggcgca
     1201 ctgaaccggg tcggcgatgc gatgcctggt ttcggaatcg tagctgccgt gctcggtgtc
     1261 gtgatcacga tgggatcgat cggcggtgct gcgtcggaga tcggcgagaa ggtggctgcg
     1321 gcgctggtcg gaacgttcct cggaattctg ctctcatacg gagtggttgg accgatcgcg
     1381 tcggcggtgg agacgaggat acgcgcggaa gaggcgtaca tgatgtcgat ccgcactgcc
     1441 ctgctggcgt tcgcgcgcgg tgattcgccg atgaccgcag tcgaatttgc gcgccgcaac
     1501 atagagccag gcgatcgtcc aagcttctcg gagctcgaga acttgactcg ccgccgcgct
     1561 gcctgagtag atcgtggcaa tgccgggcaa ggaaaaacag atcatccgca tcgtcaagaa
     1621 gaagaaagga catgcggctc atcatggcgg aagctggaag gtcgcgtacg cggacttcgt
     1681 aactgccatg atggcgttct tcatggtcat gtggctgttg agcatggacc agaagatgaa
     1741 ggacgcgatc gaaggctact tctcgaatcc ggtcggtttc aagaagggct tctctgccgg
     1801 aacgaacatc atctcgagcg gaaactcacc tgcgggcgag gtcaagcctc cactcagaat
     1861 tctgattcgc agggcggaag agaagaagtt cggcgatctg gccaaggacc ttcgcagcag
     1921 actcaacggc tcgcccgatc ttcgcgcgct cggcgcgcat atcgagaccg tgcggacaaa
     1981 gagcggtctg cgcatcgagc tcatcgaaag cggcagcggc cagacgttct ttcgcaatgg
     2041 atctgcagag ccgttgccaa tcactgtcgc tgcattgcgc ctgatcggtg ccgagctgag
     2101 tcggttgcaa acgccgatca tcatcgaggg tcatacggac tcgcagcagt tcgggagctc
     2161 cgcgtcgtac accaactggg agctgtcttc ggaccgtgcc aatgccgcac gacggctggt
     2221 acaggaggca ggggtcgatc cgtctcgaat cgtggaagtg cgcggcatgg ctgaccggga
     2281 tctgcgcgtg ccaagtaatc ccatggatcc ggccaaccgg cgaatatcga tattgcttcc
     2341 gttcacagtt ctgccaggcg agcccgatcc ggccgaaccc ttgtcgggcg atgcagagat
     2401 cgtgaagcgc tcgagttaga atacctgagc gaggttgatc gcgccctatc ggagcgtgcg
     2461 gagtgactca tatgcactgg ccgggaacat tcggcggtgc atattctgta taaggagcga
     2521 accgccatgc ccgatcccac gtacactcgc gagcaggaat tcgaggatgt ccagcgagca
     2581 ctcgccgggc agtactcgct gcatcgcgag ctggggcgtg gaggcatggg catcgtatat
     2641 ctcgcgcgcg aggtcgagct cgaccggttc gtcgcgataa aagtccttcc ggctgccctt
     2701 gcacttcgcg ccgacatgcg cgagcggttc atgcgagagg cacgtgcatc tgcgcggctt
     2761 tcgcacccca acatcgtgcc gatcttccgc gtcggtgagc ggaacggcgt ggcgttcttc
     2821 tcgatggcat atgtcgacgg agaatcgctt ggtgagcgac ttcgcgcgcg tggcgttttg
     2881 cctgcgcgtg aagttactcg cattcttcgt gacgcttcct gggctctggc gtacgcgcat
     2941 gctcagggcg tcgtgcatcg agacgtcaag cctgacaaca ttctgataga gcgcgacagc
     3001 gatcgcgtgt tcgtcacgga ctttgggatt gcggctgtgg aagacgcagc gacggcgatt
     3061 acgggagcgc atgagatcgt cgggaccgcg cagtacatgt cgccggagca ggcgtcgtcc
     3121 ggcgcgatcg acggacgcgc ggacctgtat tcactcggta tcataggatt tcttgccata
     3181 acgggccgcc tgccattcga tggtagaact gccgcagttg tcatcgcgaa acaggtatcg
     3241 gagcctgcgc cgtcgatcgc acgggagacc ggcgttccgc cgcatcttgc ctcggtgatc
     3301 gacagggttc tgcgcaagga tcccgccgag cgatttccga atggggaagc gatggcggag
     3361 gcgctgagcg agagcactgt cgcgacgcgc cggttaccac cggcactacg cctctgggtg
     3421 gacaaccgcg atccgatgcg tgtgccgtac agcgcgtggt cgttcgcatt tggattcggt
     3481 gcggtgctga cgattgtccg tggcaactcc ggttggcttc cgctgatcgg tatggctgcg
     3541 ctgccactta ttccgcacct gatcttccgc gcgcgtcaga cgcgacgcgt gttgagcgcg
     3601 ggacatggtg tggaagacat gcagttcgcg ctggccgagg taaatgaacg acgacgggag
     3661 gagatgagca tcgagctgca tgaggggcag actccggcgc tcaagtttct gcgggtgata
     3721 acgactgccg tcgtggtcgc tgacgtcggg ctcgtcatcg gcatgcagag tgtgtcgaac
     3781 gccttcctca aaacgttgta ccagcatcat accatcgcga tgcgcgcggg tttcgcggcc
     3841 gccgtcctgt tgccgctcat tctgattccc atgagcatgg cactgggcgt tccgttgctc
     3901 gggcgccggt tcaagaattt caactccggg acattgcgcg agcgattgtg gaacagtcgc
     3961 attggaactg cggttgcgaa gtggctccgt cccaagaaca cgcagccggc ggccgcgttt
     4021 gtgtcgcagc caaccgaagt cgcgctcggc agtgcggcgg gcagtttgtt cacggcgttg
     4081 ccgcagactg ttcgcgatca atttccggag ctgccgagtg tcgtgagcgg actcgaagcg
     4141 cacgcggcga agtgcagagc gaggattcag gagctggatc ggttgtacaa tgacgcgatg
     4201 aacgacacag cgatttcgcg gctccgtggt acggatccgt tgagcgacga caccagtatt
     4261 tcagctcagc ggaaacagac tgtggatgag ctcgacgctg cgcgcggaat tgcacgagcc
     4321 gatctggcac acactgtagc ggcgctcgag tccatacgac tggatctgct caagatgcac
     4381 gctggtggtg atgcgtcacg ccagattgct acgtcgatcg aagctgcgcg cgagctgaag
     4441 catgggttgg agctcgcgct ttcggcgaag cgcgaggtga gctcgatatt gcggccgacg
     4501 gtgctggaag aataggactc tcctgccccg tttcccccgc cctattttcc ctgccggctc
     4561 tccgcggtcg cgtccaggct gcgccacaag taccacgccg caatggtgcg atgcggcgcc
     4621 catttagcgc ccacctccag tactcgcttg ggagttggaa gcttgcgcat tctgtaggca
     4681 cgctggattc ccttctgaat tccgagatcg agatccggga gcacatccgg acgtccgagc
     4741 cggaacatga ggaacatctg cgcggtccag cgtcctatcc ccttgatgga agtgagggcc
     4801 gcgatgatgt cgtcatcgga cagctcgtcc aggctgtcga tcggtacctc gcctgtgtgt
     4861 acgcgggttg cgagatcgcg caggtagccg atcttctggc gcgagagacc gacggcgcgc
     4921 aactgctcat ctgacagctc gatcagcttg agcgggaccg gcatatcgtc gtcgaacaat
     4981 gcggcaaagc ggttgtagat ggtggaggca gccttgccgg agagttgttg aaagacgatc
     5041 gagcgcgtga ttgccgtgaa gtgtgccatg tgctcggcgg gctcaaacgt gcatgggcct
     5101 accgaatcga tgacagcggc gagcttggga tcggcctttc ggagatgagt gatggcgcgc
     5161 ttgtgagaca tgcgaccaag ttattcgatc catcgttcgt gaggagccgg gcgtatgcgg
     5221 atgatgggcg cggcgtaaat cgtgcttccg gacgggcatc gggccggaga cgtgcctgac
     5281 attgtatcaa aattgtgatt ttcgcggggc gaaacgggtg acttttgctg tattgccccg
     5341 ctaactttcc agattcatcc gaaaccagga gtagcagtag atgacgatct cgttgcgcag
     5401 cgccattccg gcgctcctgt gcgcggccgg ctatgccggc ctggccggtt tggccggtgc
     5461 tcagggaacg ccagcggcag cgccggccgc atcggcatgt gagccgggtg caagccaggc
     5521 ggtcgccaag gcgaccttgt tccttcaaca ggctgccgcg agcgtcaatg cgaagcagga
     5581 cgccaccaag cctctcaagc ttgcgatcac ggcgttgacg acgcccagca aggacgcgaa
     5641 ggatgccgcc gactcggttg gccgcgcgta ctatctgggt caggcttaca tcctgatgtt
     5701 gcagcaggcg ggggtgccgg catccggacc tcgctcgact tacggaatcg cgacacagcc
     5761 gactgggaac atcgatctcc tggccgccgc tgattcggct ttcactacgg tggagaaggc
     5821 gcagcctggc tgcgcgtcgg agatcaatca gtggcgcgag cagaagccgt ggctcgagtc
     5881 tgtgaacaac gcgatcgcag cgctgaacgc cgagcactat gattcggccg aggtttatgc
     5941 caagcgtgcg ctgacgatcg accgtcgcgc gccctacgcc tacaccgtgc ttgcttcggt
     6001 tgcgtccaac aagaaggatt acacgaccgc aactacgatg ctgcgcaagg cgatcgaagc
     6061 tgcgagcgcc gacacgatct acaatgacgc gaagcagaac gcgatgtacg atctggcgaa
     6121 tacgctgtcc acgcaatacg acgcagcaac cggcgcggac aaggcgacga tcggcaagca
     6181 ggcaatcgcg gcctgggaag catacgtgcc cgttggcacg atggacgcgc gggttgggcg
     6241 tgcccaggcg cttgcatctc agattgcgct cgcgataaag gatacgaccg agtacgcgaa
     6301 gatctatgcg ccagtggccg cgaatcctgc gaagtacggc gaccaggcac tgctcaatgc
     6361 aggcgtcatc gcaactcagg cggacaagcc ggacgacgcg atcaagctgt tctcggctgt
     6421 ggtcgagcgc aatccatatc agcgcgacgc gctcaagaat ctcgcagcca gttacgtggg
     6481 cgccaagcag ccggagaaag tcgctccggt agtcgacaag ctggttgcgc tggatccgaa
     6541 cagcgcgtcg aactggttgc tgtacgcgta cggatattcg ggtctgctca aggagacaaa
     6601 ggatcccaag ctgaccaagg cttacacgga ttcgctggtc aagtacaaca cgaagtccga
     6661 gaagattacg ccgaacgtcg agatccagca gttcgcagtg gatagcgcgg cgaagtcggc
     6721 aacgctgagc ggaacgatcg agaatcgtgg aacggctgcg aagtcataca cgatgacggt
     6781 ggagttcctg gacaagagcg gcaccgttgt aggaactcaa tcggtgacgg tcggtccggt
     6841 tgcgccgaag gctacggcgc cgttcaaggc ggcggcgcag gcatctggcg tcgcgggata
     6901 ccggtacaag ccgatcgtgt agtctggcgg ttgaaggctg gcggcattat aaaaaggact
     6961 cacggatcgt tcgtgggtcc ttttttgcga atgggcgttt cacactcggc gaggccacgg
     7021 tgatatcagc gttg
//
LOCUS       DATIMD010000058         2953 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_311453, whole genome shotgun sequence.
ACCESSION   DATIMD010000058 DATIMD010000000
VERSION     DATIMD010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2953
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311453"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..589)
                     /locus_tag="VLI40_01405"
     CDS             complement(<1..589)
                     /locus_tag="VLI40_01405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95854.1"
                     /translation="MTPSDRAAAQAALNEGRAVYGRLDQIRGPEDAAADIMDLWGVAE
                     TAMRAMLGGSTLSGQALVRELRQRGVLNLEQANAIASFWDARTRADDVAYKPTLTDVG
                     FARAGYNELNRVANEPLAAAQSPQNAANASSTSTFAPGGAPAAGPTGAAGNSPASAAS
                     ARTTGFSVDEPTAAPARASARASARIPRLSRPVAIG"
     gene            complement(586..1722)
                     /locus_tag="VLI40_01410"
     CDS             complement(586..1722)
                     /locus_tag="VLI40_01410"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSU95855.1"
                     /translation="MPSPFLSSEEYDERAHQLYNEGEYDQALAVLREGLTLYPSAVEL
                     HIGVGYAHHAREEYAWARRAFEEALILDPDHEDALAGIGETLLKFGLRDASLHCFRRT
                     LELGYADDLDLMLQIGRALFREGMIENAREFFEIAVQNAPENAEAVSCVGYAQHRLGE
                     DEAAIVTLRSALRLDSDHVEARVYLANILYDRGDYEAALYHLDKSNPDDHWDELGIWR
                     LIELKKSIFKLTDGDPELKPWEDRVQELAGEPDEIDDMLAEIEARAMERDQQKARGQI
                     EMFGALLNSLVDGTPEDEAITEVQELPVTHHSIESGGHTYEGTWEEIVQQMRDQKAAG
                     LPIDQYMAKEARRGYGKTGVEIPWRDPESFIKGSATAGLLRIDR"
     gene            complement(1989..>2953)
                     /locus_tag="VLI40_01415"
     CDS             complement(1989..>2953)
                     /locus_tag="VLI40_01415"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSU95856.1"
                     /translation="SMQPNVSIAQSVILSAMDFSGGRDTVVMTELDFPSVRYAYERLA
                     RRFGARVVVVPSDDGLSIDQSRLMDAIDERVRLVSVSHVLFKSAFIMDADAICAHAHS
                     VGALVSLDAYHSVGVIPVDVKRSGVDFLTGGVLKWLCGGPGAAFLYASPAVRAALEPA
                     LTGWQAHAHPFAFEQDMDYAGGIERWLTGTPAIPALFAASAGPRIVLSAGIDAIRAKS
                     VRQTEWLIAAADARGYRVHAPRESRQRGGTVAFDVPHGREVAQFLLSRNIIVDYRVGA
                     GIRVGPHFYTRDEELDACIGAIDECLANGDWRRFSEAASAAVVT"
BASE COUNT          530 a          983 c          878 g          562 t
ORIGIN      
        1 caccgatcgc cacgggtcgt gaaagcctgg ggatacgcgc cgaagcacgc gccgaagcac
       61 gcgctggcgc cgccgtcggc tcatctactg aaaaaccagt tgttcgtgct gatgctgcgc
      121 tcgccggcga attgcctgcc gcgccagtcg ggccggcggc cggcgctcca ccgggtgcga
      181 aagtggatgt cgacgacgca tttgccgcgt tctgtgggct ctgcgctgcc gccagcggct
      241 cattcgcgac gcggttgagc tcgttgtagc cggcacgcgc gaagccgacg tcggtcaacg
      301 tcggcttgta tgcaacgtcg tccgcgcggg ttcgggcgtc ccagaagctc gcgatcgcat
      361 tcgcctgctc gagattcagg actccgcgct ggcgcagctc acgcacgagc gcctgtccag
      421 aaagagtgga gccgccgagc atcgcccgca tggcggtttc ggcgactccc cagagatcca
      481 ttatgtccgc tgccgcatcc tcgggcccgc ggatctggtc gagccgtccg tagacggccc
      541 gaccctcgtt cagggccgcc tgggcggcgg ctctatcgga tggcgtcacc tatcgatgcg
      601 cagcagtccc gccgtggcgc ttcctttgat gaagctttcc gggtcgcgcc agggaatctc
      661 cacgcccgtc tttccgtatc cgcgccgggc ttccttggcc atgtactggt cgattggaag
      721 accggctgcc ttctggtctc gcatctgctg cacgatctcc tcccaggtgc cctcatacgt
      781 gtgcccgcca ctctcgatac tgtggtgggt cactggcaac tcctggacct ctgtgatcgc
      841 ttcgtcctct ggcgtaccgt ccaccagcga attcagcagt gcgccgaaca tctcgatctg
      901 cccgcgggcc ttctgctggt cccgctccat ggcccgggcc tcgatctcgg cgagcatgtc
      961 atctatctcg tccggctcgc cggccagctc ctggacacgg tcttcccacg gcttcagctc
     1021 cggatcgccg tccgtcagct tgaagatcga ctttttgagc tcgatgaggc gccagattcc
     1081 gagctcgtcc cagtggtcgt ccgggttgga cttgtccaga tggtagagcg cagcctcgta
     1141 gtcgccgcga tcgtacagaa tattggcgag atagaccctc gcctcgacgt gatcggagtc
     1201 caggcgcaac gctgagcgaa gcgtgactat cgctgcctcg tcctcgccaa gcctgtgctg
     1261 ggcatagccg acacacgaca ccgcctcggc attttcgggc gcattttgaa ccgctatctc
     1321 gaaaaattcc ctggcgttct cgatcatccc ttcccggaac agagcgcgac ctatctgaag
     1381 catcagatcg aggtcgtcgg catagccgag ctcgagcgtc cgccggaagc agtgcagcga
     1441 ggcgtcccgc aggccaaact tgagcagcgt ttcaccgatg cctgcaaggg catcctcgtg
     1501 atcgggatcc agaatgagcg cctcctcgaa ggcgcggcgg gcccacgcgt attcctcacg
     1561 ggcgtggtgc gcgtaaccca cgccgatgtg aagctccaca gcgctggggt acagtgtcag
     1621 accttcgcga agtactgcta gtgcttgatc gtattctccc tcgttataaa gttggtgcgc
     1681 gcgttcgtca tattcttcgg acgaaaggaa tgggctgggc atccggcaca cctccctcga
     1741 tcggatacat tgctgtcgta ttctactcgg cgacacacgg tttgttcaag aaccgacaca
     1801 actaatattc agcgcggacc acgactccga catacgccag attcgggcgc gtatcggcca
     1861 gacaaccagg tcgccggcca cttcctcaag tggttattat tagagtctcg gcttgaccgc
     1921 tcaggtaatg atagcggcca ggccgttgtt gcttcagcgc ctgctccagc tgctccagct
     1981 ctgctgcttc acgtgacgac cgcagcactg gcggcctccg aaaagcgacg ccagtcgccg
     2041 ttggcgagac actcgtcgat cgcaccgatg catgcgtcaa gctcctcgtc gcgcgtgtag
     2101 aagtgcgggc cgaccctgat gcccgctccg acacgataat caacgatgat gtttcgcgac
     2161 agaaggaatt gcgcgacctc gcgtccgtgc ggaacgtcga acgcgaccgt gccgccgcgt
     2221 tgcctggact cacgcggcgc gtgtacccgg taaccacgag catccgcggc ggcgatcaac
     2281 cactccgtct ggcgcaccga cttggcgcga atcgcgtcga tgccggcgct gagtacgatt
     2341 cgggggccgg cggaggccgc gaacagcgcg ggaatcgccg gtgtgcccgt aagccagcgc
     2401 tcgattccac cggcatagtc catgtcctgc tcgaacgcaa atgggtgcgc gtgagcctgc
     2461 cagccggtca gcgccggctc gagggcggct cgcacagctg gcgatgcgta caggaacgcc
     2521 gcacccggtc cgccgcacag ccacttcaaa acaccgccgg tgagaaaatc cacaccggat
     2581 cgcttcacgt ctaccggaat cactccgacc gagtgatagg catccagcga gaccagagct
     2641 ccgacactgt gcgcatgcgc acagatcgcg tctgcgtcca tgatgaacgc cgacttgaac
     2701 agtacgtgcg acaccgatac gagccgcaca cgttcgtcga tcgcatccat cagacggctc
     2761 tgatcgatgc tcagcccgtc gtccgacgga acgacgacga cacgcgctcc gaaccgtcgt
     2821 gcgagccgct cgtacgcgta acgcacggat gggaaatcca gctcggtcat caccacggta
     2881 tcgcgaccac cgctgaaatc catcgcagac agaatgacgg attgcgcgat ggatacgttc
     2941 ggctgcatgg aca
//
LOCUS       DATIMD010000059         1690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2621122, whole genome shotgun sequence.
ACCESSION   DATIMD010000059 DATIMD010000000
VERSION     DATIMD010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1690
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2621122"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VLI40_01420"
     CDS             complement(<1..191)
                     /locus_tag="VLI40_01420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95857.1"
                     /translation="MSRRTTAGIAVTALLVAAACSPGKQADRSRTPAQSASEAAGAAA
                     ASRDSVAIRTTDGAIQLGLA"
     gene            complement(215..>1690)
                     /locus_tag="VLI40_01425"
     CDS             complement(215..>1690)
                     /locus_tag="VLI40_01425"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSU95858.1"
                     /translation="CTDGERRLEMRCRVSGTIAAAVLVVFTAAVPRATQAQVDRSKPP
                     VLGPPPALHIPPVAVRELANGLKLMVVERHNLPVADFVLVIPSGATANPAHRAGTADH
                     VANMLTEGTTTRSALQIADQTAYLGISLFSSSGWDATTIRLSTPTAQLDSALALFADV
                     ALRPSFPPAEFARVKQERLTALLQLKDRGPAIASLVYPTLLYGKDNPYGRSAVGTDAS
                     VGAMTAADLSGFYDSHFAPNGATLIAVGDVTPAEVEQKVSALFSAWTRKNVPAVNVGA
                     GVPAAATTIYMIDKPGAAQSSFRIGSVGVARSTPDYFPIEVMNTALGGSFTSRLNQVL
                     REDKGYTYGASSRFDMRKYGGLFIASAEIVSAKSDSALVDFMQQLRAIRDTIPATELN
                     KTERYLQLELPSGFETTGEIAMRLSDVALYGLPLDYYNHVVDEIGGVTQGEVQRVAQK
                     YIDPSHLTVLIVGDRKTIEGPIKALNIGPIVFRDANGNPIQ"
BASE COUNT          308 a          558 c          463 g          361 t
ORIGIN      
        1 gccagcccga gttgtatggc cccatcggtc gttcgaatcg ccacgctgtc cctcgatgcc
       61 gcggcagcgc ctgctgcttc agatgcgctc tgtgccggtg tgcgtgacct gtccgcctgc
      121 ttgcccggac tgcatgcagc cgccacaagc agtgccgtga cagctattcc tgcggtagtt
      181 ctcctcgaca tcgatgctcc tcatccctca cttgtcattg aatcgggttg ccgttcgcat
      241 cgcgaaacac gattggaccg atgttgagcg ctttgatcgg tccttcgatt gtcttcctgt
      301 ctccaacgat caacacggta agatgcgacg ggtcgatgta tttctgcgca acccgctgca
      361 cttcgccctg cgtgactccg ccaatctcat ccactacgtg attgtagtag tccagcggca
      421 agccataaag tgcgacgtcg ctcaggcgca tcgcgatctc gcccgtggtc tcgaatccgc
      481 tcggcagctc gagctgcaga tagcgctcgg tcttgttcag ctccgtcgcc ggaatcgtgt
      541 cgcgaatggc tctcagctgc tgcatgaaat ctaccagagc ggagtccgac ttcgcagata
      601 cgatctccgc tgacgcgatg aacaggccgc catactttcg catgtcgaac ctggacgacg
      661 caccatacgt atagcccttg tcttcccgaa gcacctgatt gagccggctg gtgaacgatc
      721 ctcccagtgc ggtgttcatc acttcgatcg ggaagtagtc aggggtcgat cgcgccaccc
      781 ctaccgagcc aattctgaac gacgactgtg cagcccccgg cttgtctatc atgtagatcg
      841 tcgtcgcggc cgctggaacg cccgcaccca cattcacagc cggtacattc ttgcgtgtcc
      901 acgcgctgaa tagcgcgctt accttctgct cgacctctgc cggcgttaca tctccgacag
      961 caatcagcgt ggcgccgtta ggggcaaaat ggctgtcgta gaaaccgctg agatccgccg
     1021 ccgtcatcgc gcccaccgaa gcgtcggtgc ctacggccga gcgaccgtaa ggattgtctt
     1081 ttccgtacag aagcgtcgga tacaccaggc tcgcaatcgc tggccccctg tctttcaact
     1141 gaagcagcgc tgtcagccgc tcctgcttta cacgcgcgaa ctcggccggc gggaacgatg
     1201 gacgcagtgc cacgtcggcg aacaacgcga gcgcgctgtc gagctgtgcc gtcggtgtcg
     1261 atagtcggat cgtggtcgcg tcccatccgc tcgagctgaa cagggatatt cccagatacg
     1321 ccgtctgatc cgcaatctgc agagcgctcc gggtagtcgt tccttccgtc agcatgttgg
     1381 cgacgtgatc cgcggtaccc gcacgatgcg ccggatttgc cgtcgcgccc gatggaatca
     1441 cgagaacgaa atcagctacc ggcaaattgt gacgctctac aaccatcaac ttgagcccgt
     1501 tcgcaagctc gcgtactgcc acgggcggta tgtgcaacgc cggcggcgga ccaagcaccg
     1561 gcggtttgct gcgatccacc tgcgcctgcg ttgccctcgg tactgccgct gtaaacacca
     1621 cgagtaccgc tgctgcgatg gtgcccgaca ctcgacatct catctcgagc ctcctttcac
     1681 catcagtgca
//
LOCUS       DATIMD010000060         2005 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1467142, whole genome shotgun sequence.
ACCESSION   DATIMD010000060 DATIMD010000000
VERSION     DATIMD010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1467142"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..518)
                     /locus_tag="VLI40_01430"
     CDS             complement(<1..518)
                     /locus_tag="VLI40_01430"
                     /inference="COORDINATES: protein motif:HMM:NF016398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheC"
                     /protein_id="HSU95859.1"
                     /translation="MTITDMQALSELQRDALREVANIGAAHAATALSLMTGTKIMISV
                     PTITVAPLAELAPLISRANEQIALVPMEMSGGLHGHTILAFPLVTAHRLASLMLTRDV
                     STDTALSELEASALTEAGNILAGAYMTALSEFMKMRLMPSPPSLSVGPAREVLADTAW
                     ATGHTGGFVFCV"
     gene            complement(529..>2005)
                     /locus_tag="VLI40_01435"
     CDS             complement(529..>2005)
                     /locus_tag="VLI40_01435"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSU95860.1"
                     /translation="VAELSAALAELESMPTSADAIAAAFRAVHSIKGMAAAMGYTLIT
                     ERADALESALDILRRGDEQLTPSSLGDLIDDADTLAREIEIVATRSASGPSVEQAAAT
                     DDAPASTARKRATHVRIRASRLDALMNLVGEIEIARGQLERELRQVTDDDISSAFAST
                     SRLLRELREQVIGARMVPVGDVFERFPRLVRETARSLGKEVDFTLDGSEIEMDRSILE
                     RIGDPVMHLLRNALDHGIESAEERASNGKSSRGRLTLSAQREAGYVLIRVADDGGGID
                     RDSVLARAREAGIVGWDTDALDDITLLRVLAHPGFSTAASVTNISGRGVGLDVVDAAV
                     RLLGGTIEIRTVARRGTAITLRLPLSVAIVRALIARVGEELFAIPFTHVVETLQLVPP
                     PDAFRGADWTETSIGDLTVRVVMLRTLFGSEPCVSERMPGVSVLARGRRAALIVDDFV
                     GQQDVVVKRFDPPRGGSPMFAGATVLGDGSPALIVDVNSLI"
BASE COUNT          366 a          682 c          614 g          343 t
ORIGIN      
        1 tcgacgcaga agacaaagcc gcccgtgtga cctgtagccc aggcggtgtc cgccagtact
       61 tcgcgcgcgg gaccaacgct cagtgacggg ggcgacggca tcagccgcat cttcatgaac
      121 tcactgagcg ccgtcatgta cgcgcccgcg aggatgttcc cggcctcggt gagcgcggat
      181 gcctccagct cactcagcgc cgtatcggtt gacacgtcgc gcgtgagcat caacgaagca
      241 agacgatgcg cggtgaccag cgggaacgcg agtatggtgt ggccgtgcag gccgccgctc
      301 atctccatcg ggaccagcgc gatctgttcg ttcgcgcgag agatgagtgg cgcgagctca
      361 gcaagcggcg cgaccgtgat cgtcggcacg ctgatcatga tcttcgtgcc ggtcatcaac
      421 gagagcgcgg tggcggcgtg ggccgcgcca atgttcgcaa cctcgcgaag ggcgtcgcgc
      481 tgaagctcgc tcaatgcctg catatcggtg atggtcatga cggctccgct aaatgagact
      541 gttcacatcc acaatgagcg ccggcgaccc atcacccagc accgttgccc ctgcgaacat
      601 aggcgatcca ccgcgcggtg gatcgaagcg ctttaccact acatcctgct ggcctacgaa
      661 gtcgtcgacg atcaacgccg ccctgcgtcc gcgagccaga accgacacac cgggcatcct
      721 ttccgagacg cacggctcac ttccaaataa cgtgcgtaac atgacgaccc ggacagtcag
      781 atcgccaatg ctcgtttccg tccagtcggc gccgcgaaac gcgtccggcg gcggcaccag
      841 ttgcagcgtt tccacaacgt gcgtgaacgg tattgcgaac aactcctcgc cgacgcgcgc
      901 gatcagcgcc cgtacaatcg cgaccgagag cggcaaccgc aaggttatcg cggtgccccg
      961 cctggctacc gttcttatct cgatcgttcc gccgagcaga cgaacggcgg catcgacgac
     1021 gtcgaggcct acgccgcgtc cggagatgtt cgtgacggat gcggcggtgg agaagcctgg
     1081 atgcgcgagt acgcgcagca atgtaatgtc gtcgagcgca tcagtatccc agccgacgat
     1141 gccggcctct cgcgcacgcg ccagcacact gtcgcgatcg attccgccgc cgtcatcggc
     1201 aacgcgaatc agtacgtagc ctgcctcgcg ctgcgcactc agtgtcagac gtccgcgtga
     1261 ggacttgccg ttgctcgccc gctcctcggc cgattcgatt ccgtgatcca gtgcgttccg
     1321 aagcagatgc atcacgggat cgccgatgcg ctcgaggatc gagcgatcca tttcgatctc
     1381 cgagccgtcg agcgtgaagt ccacttcctt gccgagcgat ctggcagtct cccgcaccag
     1441 tcgcgggaag cgctcgaaca cgtcgcccac cggcaccatg cgcgcgccaa ttacctgctc
     1501 gcgcaattcg cggaggagac gcgacgtgct tgcgaacgcg gacgaaatgt cgtcgtcagt
     1561 gacctgccgg agctcccgct ccagctgccc gcgcgcgatc tcgatctcac cgacgagatt
     1621 catcagcgcg tcaagcctgc tcgcgcggat ccgcacgtgg gtggcacgct tgcgcgcagt
     1681 gctcgccgga gcatcgtccg tcgccgcggc ctgctccacc gacggcccgg acgcagagcg
     1741 cgtcgcaaca atctctatct cgcgtgcgag cgtgtccgcg tcgtcgatca gatcgccgag
     1801 cgacgatggt gtaagctgct catcaccgcg gcgcaggatg tcgagtgcag actcgagcgc
     1861 gtctgcgcgc tcggtgatga gcgtgtaacc catcgccgct gccattccct tgatactgtg
     1921 cacagcgcga aacgcggccg ctatggcgtc agcggacgtc ggcatgctct ccagttccgc
     1981 cagcgcggcg ctcaactcgg cgaca
//
LOCUS       DATIMD010000061         2225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3488485, whole genome shotgun sequence.
ACCESSION   DATIMD010000061 DATIMD010000000
VERSION     DATIMD010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3488485"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..773
                     /locus_tag="VLI40_01440"
     CDS             <1..773
                     /locus_tag="VLI40_01440"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HSU95861.1"
                     /translation="VLGEYEIDTVMHLAAQTIVPIANRNPISTFETNIGGTWSLLEAC
                     RRSPKVMQIVYASSDKAYGESDDLPYSETTPLRGRHPYDVSKSCGDLIAQSYAATYDL
                     PVAITRCGNVFGGGDLNWNRLVPGTIRSALHGERPTIRSDGTLVRDYFYVEDGAAACA
                     LLAERLAGNEKLRGEAFNFSNEAQLTVRQMVERILGLMGVSVDFEMRNDANNEIPNQF
                     LNAERARTELGWRPLFTVDEGLERTIEWYSRFLGSSIA"
     gene            794..>2225
                     /locus_tag="VLI40_01445"
     CDS             794..>2225
                     /locus_tag="VLI40_01445"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU95862.1"
                     /translation="MVGRLTALMSRRQRAQLAILFMAMTAGALMEMVGIGAIPAFAAL
                     VGSPERVLNNHYVLLYIGDLHRVPQSSLLLYAAGFLLVLFLLKNTYLFLLLLAQSTFT
                     QRFQSRLAVRVLRAYLYAPYHLHLQRNPSELLRNANSEALEIIASVVMPGMILTMELL
                     TVTAILTLLFVAQPAVSIFACVLLGGTALLFMKTLRRRLSHYGERIQFFRGKMVQTVH
                     ESLSSVKMTKVLGREDYFLDAFAFSTNGYVEANRFRQIATETPRLILEITAIAGLLGV
                     AAVLTVAGKSPVTITVTLALLSIALVRTIPSVNRITSALATLRYGDYALEAISQDLKE
                     LEVRDVAIRRRDDTPIPLRTSIRFEGVTYQYPGATKPSLTDISLTVERGASVAIIGPT
                     GAGKTTLVDILLGLLDPSEGRVYIDERDLSENIRSWQRSIGYVPQDIYLTDDTIRGNI
                     ALGIPPKDFDHASLDRAVAAAQLSSFV"
BASE COUNT          455 a          617 c          666 g          487 t
ORIGIN      
        1 gggttctggg cgagtatgaa atcgacacgg tgatgcacct ggccgcgcag actatcgtgc
       61 cgatcgccaa ccgcaatcct atctccacgt tcgaaaccaa cattggcggc acgtggtcac
      121 tgctcgaggc ctgtcggcgg agcccgaagg tgatgcaaat cgtctatgca tcgtcggata
      181 aagcatacgg cgagagcgac gacttgcctt acagcgaaac gacaccgctt cggggacgtc
      241 atccgtacga tgtgagtaaa tcgtgcggcg acctgatcgc gcaaagctat gcggctacat
      301 acgatcttcc cgtcgcgatc acgcgctgcg gcaatgtatt cggcggcggc gatctcaatt
      361 ggaaccgact cgtgccaggt acgattcgat cggcactgca tggtgagcga ccgacgattc
      421 gttcggacgg gacgctggtg agagactact tctacgtcga agatggcgca gcagcgtgcg
      481 ctcttctggc cgagcgattg gccggcaacg agaagttgcg gggagaggcg ttcaacttct
      541 ccaatgaggc gcagctgacg gtaaggcaga tggtggagcg gatattagga ctaatgggag
      601 tgagcgtgga cttcgagatg cggaacgacg cgaataacga gattcccaat caattcctga
      661 acgcggagcg cgcgcggacg gagttggggt ggcggccact gttcactgtt gatgaagggc
      721 tggagcgtac tattgagtgg tattcacggt tcctcggctc atcaatcgcg tgagggtgaa
      781 gccgttgggc agtatggtag gacggctcac cgcgctcatg tcgcggcgac agcgggcgca
      841 gcttgcgatc ctcttcatgg cgatgacggc aggtgcgctc atggagatgg ttggcattgg
      901 cgcgatcccc gcattcgcgg cactggtggg aagccctgaa cgggtgttga acaaccatta
      961 cgtactattg tatatcggcg acctgcatcg agtgccgcag tccagcctgc tgctgtacgc
     1021 agccgggttc ctgctcgttc tattcttgct caagaacacg tacctatttc tgctgttgct
     1081 tgcgcagtcg acattcacgc aacgtttcca gtcccgattg gctgtaagag tgcttcgcgc
     1141 ctatctgtac gcgccgtatc acctgcacct tcagcgcaat ccgtccgagt tgctgcgaaa
     1201 tgcgaattcc gaggcgctcg agatcatcgc ctcggtagtc atgcctggaa tgatcctgac
     1261 gatggagctc cttaccgtca cggccatttt gactttgctg ttcgtggctc aacccgctgt
     1321 ttccattttt gcgtgcgtgc ttctcggcgg aacggccctc ctgttcatga agacgctaag
     1381 gcggcgcctg tcgcattacg gcgaacggat tcagttcttc cgcggaaaga tggtccagac
     1441 cgtacacgaa agcctcagca gtgtgaagat gaccaaggta ctcggcagag aggattactt
     1501 cctcgacgcg ttcgcgttca gtaccaatgg ctatgtcgag gcaaaccgtt ttcggcagat
     1561 tgcaaccgaa acgccgcggc taattctcga gatcaccgcg atcgcgggac tacttggtgt
     1621 cgcagcagtg ctcaccgttg ccggtaagtc accggtgact attacagtca ctctggcgtt
     1681 gctgagcatt gcactggttc gcaccatacc gtcggtgaat cgaatcacgt ccgcgctcgc
     1741 tactcttcgc tatggtgatt atgcactgga ggccatcagt caggatctca aggagctcga
     1801 ggtcagagat gtggccatcc gcaggcgcga cgacactccg attccgctgc ggaccagcat
     1861 ccgatttgaa ggggtgactt atcaataccc tggcgccacg aagccgtcgt tgacggatat
     1921 ctccctgacc gttgagcgtg gcgcgtcggt cgccatcatt ggtccaacgg gggcaggaaa
     1981 gacaaccctg gtcgatattc tcctgggatt gctagatccg tccgagggtc gagtttacat
     2041 cgacgagcgc gacctgagcg agaacatccg ttcgtggcag cgctcaatcg gctacgtgcc
     2101 gcaggacatc tatctcaccg atgacacaat tcgtggcaat atcgcgctgg gaataccgcc
     2161 gaaggacttt gatcacgcct cactcgaccg agcggtagca gcggcgcagc tctcgagctt
     2221 tgtag
//
LOCUS       DATIMD010000062         8134 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4932643, whole genome shotgun sequence.
ACCESSION   DATIMD010000062 DATIMD010000000
VERSION     DATIMD010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8134
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4932643"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..696
                     /locus_tag="VLI40_01450"
     CDS             <1..696
                     /locus_tag="VLI40_01450"
                     /inference="COORDINATES: protein motif:HMM:NF014674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     GatCAB subunit B"
                     /protein_id="HSU95863.1"
                     /translation="QETMIWDASRGTVRPARSKEESHDYRYFPDPDLPPLILDPDYVT
                     RLRRTLPELPQQLRERFRTEFALNDAELDAVTAESRLAAYFEGVVRAHGDAKAAAKWV
                     MGELAAALNETGTSIRDFPVRAPQLAELLDMVRDGKLSHTAAKAVFATMRTSGKSAPV
                     VAAEMSVTQVGDDSQIEQWIEDVFAELPSETARFRAGEKKLTGVLVGAVMKKSKGRAD
                     PKKVNALLGKLAG"
     gene            complement(774..1652)
                     /locus_tag="VLI40_01455"
     CDS             complement(774..1652)
                     /locus_tag="VLI40_01455"
                     /inference="COORDINATES: protein motif:HMM:NF013078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc dependent phospholipase C family protein"
                     /protein_id="HSU95864.1"
                     /translation="MLLLLLTPRTAHAWTPGTHVFLGDAVLRSLSMLPGTIAELLEAF
                     PYDFLYGSIAADTSIAKKYAEAGRHCHSWKVGYEIHDLAADGRMRAFALGYLAHLAAD
                     SVAHNYFVPKQLTVTSTTSSIGHSYWESRFESHLGGDSPHRARELILLDHSRADFHLD
                     RILSPTIFSTHTNRRIFRGMVYVTDTDSWQRAFQLISEKSRWDLANEEVGAYMTRSYD
                     FILDLFNRMDESVPYTLDPSGDVALREAKQVRRAALRRGGGELMIRDEADRKFGLPET
                     ELTYHEKLGAPIYPVE"
     gene            complement(1678..2142)
                     /locus_tag="VLI40_01460"
     CDS             complement(1678..2142)
                     /locus_tag="VLI40_01460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95865.1"
                     /translation="MTDTEAQPAAAARTPRTGRGPRRAGAEVSHEEDLDLLTAALIGL
                     TVGVGVTLLVRAAIPSRASGRHGMGLAGRGAELAALAGVAGAGMARKAARGARRGYDR
                     GMEMAEDMSLDGVGEQLHDYFEAAKAAVEDTVSGELQDLRKSIRRRRRRLGI"
     gene            complement(2051..2662)
                     /locus_tag="VLI40_01465"
     CDS             complement(2051..2662)
                     /locus_tag="VLI40_01465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HSU95866.1"
                     /translation="MTHITTLLIQAAHVLPDTLVTKEVPAVVGTFEKITSVASGLTTI
                     ALLVLAVGLVPAAWNFRKTYKKVNDLLDRVYGDVAPLVRSASIVTEDAREIVAIVKGD
                     VRQVQQTVAAANARLLKAVKEAEARLDEFNALIEVVQDEAESAFVSTASTVHGVRTGL
                     AQVFDNTEDFEDGDDRHGSSAGSSGADAPNRPRTTSRRRGGLA"
     gene            2773..4074
                     /gene="murA"
                     /locus_tag="VLI40_01470"
     CDS             2773..4074
                     /gene="murA"
                     /locus_tag="VLI40_01470"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HSU95867.1"
                     /translation="MTAVQYIVEGGHRLSGSIRPSGNKNAALPIVAAALLSSRPVRLT
                     NVPRIRDLETLVELLRSVGASADWTERNVLDISAPELRPEKLDPALCVRIRASILLAA
                     PLLARCGTVTLPAPGGDVIGRRRLDTHFLAMSQLGVRITDEDGYHMTVDRLIGADVFL
                     DEPSVTGTENALILAAAAEGTTILRNAASEPHVQDLAHFLVALGSRIDGIGTNTITVH
                     GGRTLGETSVSHEIGPDHIEVGSFIGLAAVTRSEIRVVDAGVEHLRSTLMGFERLGIR
                     CRIEGRDLIVPADQELTIHKDFGGHIPKLEDQPWPAFPADTMSIAIVAATQCNGVVLI
                     HEKMFESRLFFVDRLIGMGANIVLCDPHRCIVSGPSPLRGSTMESPDIRAGMAMLLAA
                     LCARGQSTINNVTQIERGYERIDERLNALGARVTRIGDRRA"
     gene            4095..4778
                     /locus_tag="VLI40_01475"
     CDS             4095..4778
                     /locus_tag="VLI40_01475"
                     /inference="COORDINATES: protein motif:HMM:NF014619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HSU95868.1"
                     /translation="MIEEVPDFAELGVLAFTTTRAAGTFGLSGTDPVGEVMGRWTALL
                     TDIGARGICVAPQVHGNTVLAHANPWEGFLRTRPADGHATQERGLALAVTLADCAPVF
                     IAHPSGAVALVHSGWRGTEARIMDQAVRVLGRAGLSPDELRVHIGPAICGRCYEVSAE
                     VRARLTGETSNRPGNVDIRSLIAEQATEAGIGRVSVSSSCTRCDNDSFFSHRAGDTGR
                     QIAVIVAKQ"
     gene            4838..6661
                     /locus_tag="VLI40_01480"
     CDS             4838..6661
                     /locus_tag="VLI40_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HSU95869.1"
                     /translation="MPETETLTGTTEHALTAREKRDMQRAQLRPLANLRPELYDEDDY
                     SSDELEAMMAMYNGTMASIEEGEIVSAKVLDIRDNMVILDIGFKSEGTIPLEEFKDMP
                     ELKPGDSVEVLLEHLEDLEGSVVLSKKKADFMRVWERIRVAYESDQPVAGILTKKIKG
                     GVVVDLMGVDAFLPGSQIALRRVPNVDELLGQTFDFKIIKLNKRRRNIVVSRRVILEQ
                     ERAGKRERLMKELQKDQIRKGIVKNITDFGAFIDLGGVDGLLHITDMSYGRVTHPSEM
                     VHIGQELEVKVLDIDWERERISLGLKQLQSYPWQDVADKYPVGTRVSGKVVSITNYGA
                     FIELEPGIEGLVHISEMSWTRNVRHPSKIVSIGETIEAVVLKVDPSEEKISLGMKQTE
                     EDPWMTLPQRYPIGMRLTGKVRNLTSFGAFVEIEPGIDGLIHVSDMSWTRRVQHPSEV
                     IKKGDTVDVVVLNIDPENKRISLGLKQAVEDPWLRIGETYPVGTELRGHVVRLMDKGV
                     VVDIGNDIEGFVPNSQLNFGNPVNSPADIVYEGMNLDLRVLEVDPIHRRIVLAVTAIP
                     EEQPPRPAEPSKVIPMETEEYSVSDYAADIPAVLPATYDEE"
     gene            6665..>8134
                     /locus_tag="VLI40_01485"
     CDS             6665..>8134
                     /locus_tag="VLI40_01485"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HSU95870.1"
                     /translation="MTMRDKLALLEQRRAESELGGGVARIEAQHRKGKLSARERIDLL
                     VDEGSFTELDRFVVHRSTDFGLEEQKYYGDGVITGWGRIDGRLVYVFSQDFTVFGGSL
                     SESFAEKIVKVMDLAVRNGAPVIGLNDSGGARIQEGVVSLGGYAEIFLRNTLASGVVP
                     QISAILGPCAGGAVYSPAITDFTYMVRHTSYMFVTGPNVVKTVTHEDVTMEELGGADT
                     HMMKSGVSHFTYDSEPECIAAIRDLMRFIPSNNIDEPPRGAGTDPRDRRDEALLDIVP
                     DNANKPYDMHEVLRRIIDDGAFYEVQREFAENIICGFAHLGGFSVGIVANQPAMLAGV
                     LDINASIKAARFIRFCDAFNIPVVTFVDVPGFLPGVGQEHGGIIKHGAKLLFAYCEAT
                     VPKLTVITRKAYGGAYDVMSSKHIRGDFNVAWPTAEIAVMGPKGAVEILFRKDIVGSA
                     DPVAATDRKIAEYVEKFAHPYVAAGRGYIDDIIDPRDTRP"
BASE COUNT         1589 a         2513 c         2499 g         1533 t
ORIGIN      
        1 caggagacga tgatctggga tgcgtcgcgt ggcaccgtcc gtcctgccag gtccaaggaa
       61 gagagtcatg actaccgcta cttcccggat ccggaccttc caccgttgat tctggaccct
      121 gattacgtaa ctcgccttcg tcgcacctta ccggaactgc cgcaacaact tcgtgagcgg
      181 ttcaggaccg agttcgcact caacgacgcg gagctggatg cggtgactgc ggagtctcgt
      241 cttgcggcgt acttcgaggg tgtagtgcga gcgcacggtg acgccaaggc cgctgcaaaa
      301 tgggtgatgg gcgagctcgc cgccgcgctc aatgaaactg gaacaagcat tcgcgatttc
      361 ccggtgcgcg caccgcagct ggcggaattg ctggacatgg tgcgcgacgg caaattgagc
      421 cataccgccg cgaaggcagt attcgcgacg atgcggacca gcgggaagtc cgcacccgtt
      481 gtcgcggcgg aaatgagcgt cactcaggtc ggagacgatt cacagatcga gcagtggatc
      541 gaggacgtgt tcgcagagct cccgagcgag actgcacgat tccgcgccgg agagaagaaa
      601 ttgaccggcg tgctggttgg cgccgtgatg aagaagtcga agggacgcgc ggatccaaag
      661 aaggtgaacg ctctgctggg caagctcgcg ggttagagaa acttccgctc gtgtgtgaac
      721 tacgactcgt cattcctgcg aaagcgggaa tgacgacctc agctggcggt cttttactct
      781 accggataga tcggcgcgcc cagcttctcg tgatatgtga gctcggtctc cggtaatccg
      841 aacttgcggt ccgcttcgtc gcgaatcatg agctcgccac cgccgcgccg caacgccgcg
      901 cggcgcacct gctttgcctc tctcagcgcg acgtctccgg agggatcgag ggtgtagggc
      961 accgactcgt ccattcggtt gaagagatcg agaatgaagt cgtacgaccg cgtcatatac
     1021 gcgccgactt cctcgtttgc gagatcccag cggctcttct cggatatcag ctggaatgca
     1081 cgctgccacg aatccgtgtc agtgacgtaa accatgcccc gaaagatcct gcgattggtg
     1141 tgcgtgctga atatcgtcgg actgaggatg cggtcgagat gaaaatcggc gcgcgaatgg
     1201 tccagcagaa tcagctcacg cgctctgtgc ggcgaatcac cgcccaggtg gctttcgaat
     1261 ctgctttccc agtagctgtg accgatcgaa gacgtcgtcg acgttacggt gagctgcttc
     1321 gggacgaagt agttgtgcgc gacggaatcc gcagcgagat gcgccaggta tcccagtgcg
     1381 aatgcgcgca ttcggccgtc ggcggcgagg tcgtggatct catacccgac cttccaggag
     1441 tgacagtgcc ggcccgcttc ggcgtacttc ttggctatgc tcgtgtcggc tgcgatcgat
     1501 ccatacagaa agtcgtacgg aaatgcctcc agcagctcgg cgatcgtacc tggcagcatc
     1561 gagagcgagc gtagcacggc atcacccaga aacacgtgcg tgcccggagt ccaggcgtgc
     1621 gcggttctgg gtgtgagaag gagcagcagc accgccagtg ccgctgctcc ccaaacgcta
     1681 aatgcccagc cgccggcgcc ggcggcgaat cgatttgcgg agatcctgca attcccccga
     1741 gacagtgtct tcgaccgcag ccttcgcggc ctcgaaataa tcatgcagct gctcgccgac
     1801 accgtcgagc gacatgtcct ctgccatctc catcccgcga tcgtaaccgc gtcgtgcacc
     1861 gcgcgcagcc ttccgcgcca ttccggcgcc ggcaactccc gcgagcgccg cgagctccgc
     1921 accgcgcccg gccaggccca tcccgtgtct acccgaggcg cggctcggta tcgcagcgcg
     1981 aaccagcagt gtaacgccga ccccgaccgt gagtccgatc agtgcggcag tgagaagatc
     2041 gagatcttcc tcatgcgaga cctccgcgcc ggcgcgacgt ggtccgcggc cggttcgggg
     2101 cgtccgcgcc gctgctgccg gctgagcttc cgtgtctgtc atcgccatcc tcgaaatcct
     2161 ccgtgttgtc gaaaacctgc gccagcccgg tccggactcc gtgtaccgta gatgcggtgc
     2221 tcacgaatgc ggattcggct tcgtcctgta cgacttcgat cagcgcgttg aattcgtcca
     2281 gcctcgcctc ggcttccttc accgccttga gcagtcgcgc gtttgccgcg gctaccgttt
     2341 gctgaacctg gcgcacgtct cccttcacga tggcgacgat ctctcgtgcg tcttcggtca
     2401 cgatgctcgc gctcctcacg agcggcgcca catcaccgta aacgcgatcc agcagatcgt
     2461 tcaccttctt gtacgtcttc ctgaagttcc acgctgccgg aaccagtccc accgcaagca
     2521 caagcaatgc gatcgtcgtg agaccgctcg cgaccgaggt gatcttctcg aaagtgccca
     2581 ctaccgccgg cacttccttg gtgaccagtg tgtcgggaag aacgtgcgct gcctggatca
     2641 gcagcgtcgt tatgtgcgtc atgtcgtaca taggcaccga tggtgcaagg gagaggccag
     2701 ttccggttac cccgtaaatt gccaccgtga cggccaatct ggacgtcccg accctatatt
     2761 gtcgccaata ccatgaccgc tgtccaatac atcgtcgaag gcggacaccg cctctccggc
     2821 agcatccgcc catctggcaa caagaacgcc gcactcccga tcgtggccgc cgcactgctt
     2881 tcgagcaggc cggtccggct cacgaatgtg cctcgaatcc gcgacctcga aacacttgtc
     2941 gagctgctcc gctccgtggg cgcctctgcc gactggaccg agcgcaacgt actcgatatc
     3001 tcggccccgg agctccgccc cgaaaagctc gacccggcgc tctgcgtccg aatacgcgcc
     3061 tcgatactgc tcgccgcacc cctcctcgct cgctgcggca cggtaaccct gccagcgccc
     3121 ggcggcgacg tgatcggacg ccgccggctc gacacgcact ttctcgcgat gtctcagctt
     3181 ggcgttcgca ttaccgacga ggacggctat cacatgacgg tcgatcgcct catcggtgcg
     3241 gacgtgtttc tggacgagcc gagcgtcact ggaaccgaga acgcgctgat tctcgcggcc
     3301 gcggcggaag gtaccacgat tctccgcaac gctgccagcg agccgcacgt gcaggacctc
     3361 gcccattttc tcgtcgcgct cggctcccga atcgacggca tcggcaccaa tacgatcact
     3421 gtgcacggcg gcagaacgct tggcgagacc tccgtttccc acgagatcgg cccggaccat
     3481 atcgaagtcg gctcgttcat cggcctcgca gcggttacac gttccgagat tcgtgtggtg
     3541 gacgcaggtg tcgagcatct gcgctcgacc ctgatggggt tcgagcgcct cggaattcgc
     3601 tgtcgcatcg aaggccgcga cctcatcgtg ccggcggatc aggagctcac gatccacaag
     3661 gacttcggcg gtcacattcc caagctcgaa gaccagccat ggccggcgtt tccggcagac
     3721 acgatgtcga tcgccatcgt cgccgcaaca cagtgcaacg gcgtggtgct gatccacgag
     3781 aagatgttcg agtcacgcct gtttttcgtc gacaggttga tagggatggg cgccaacatc
     3841 gtgctgtgcg atccgcatcg ctgcatcgtg agcggaccga gcccgctgcg cggatcgacg
     3901 atggagtcac ccgacattcg cgcggggatg gcgatgctgc tagccgcact atgcgcgcgc
     3961 ggccagagca ctatcaacaa cgtcacgcag atcgagcgtg gttacgagcg gatcgacgag
     4021 cgcctcaacg cactcggcgc gcgcgtcacg cgcatcggcg accggcgggc gtagggacca
     4081 ccgtgcaacc tgagatgatc gaggaagtac ccgacttcgc ggagctcggc gttctggcat
     4141 tcaccacgac gcgcgcggcg ggcacgttcg gactgtcagg tacggatcca gtcggtgagg
     4201 tgatgggccg ctggaccgca ttgctgaccg acatcggcgc ccggggaatc tgcgtcgctc
     4261 cccaggtgca tggaaatact gttctggcgc acgccaatcc gtgggaaggc tttctgcgaa
     4321 cgcggccggc ggacggccac gcaacccagg agcgtggcct cgccctggcg gtcacactcg
     4381 cagactgcgc gcccgttttc attgcccatc cctcgggcgc cgtcgcgctg gtccactccg
     4441 gttggcgcgg taccgaagcg cgcatcatgg accaggctgt tcgagtcctg ggtcgcgcgg
     4501 gtctttcgcc ggacgagctg cgcgtccaca tcgggccggc aatttgcggt cgttgctacg
     4561 aggtatccgc ggaggtgcgg gcccggctca ccggtgagac gtcgaaccgg cccggcaatg
     4621 tggatatcag atcgctcatt gcggagcagg cgaccgaggc cgggatcgga cgggtctcgg
     4681 tgtcgtcttc ctgcaccaga tgtgacaacg attcgttctt ttcccaccgt gccggtgaca
     4741 ccggtcgcca gatcgcggta atagttgcaa aacagtagtt tctgacatat atttccaggt
     4801 tcccgtagaa ccgcagtaca acccttttac ccagcaaatg cccgaaacag aaaccctaac
     4861 cggcacgacc gaacacgctc ttaccgcgcg ggaaaagcgc gatatgcagc gtgcgcagct
     4921 gcggccgctt gccaacctcc gcccagagct gtacgacgaa gacgattact cgagcgacga
     4981 gctcgaggca atgatggcga tgtacaacgg taccatggcg tccatcgagg aaggcgagat
     5041 cgtgagcgcc aaggtcctcg atatacgcga caacatggtg atcctggaca tcggcttcaa
     5101 gtccgaggga accatcccgc tcgaagagtt caaggacatg cccgagctca agccgggcga
     5161 ttccgttgaa gttcttctcg agcacctgga agacctcgaa ggctcggtcg ttctttccaa
     5221 gaagaaggcc gacttcatgc gcgtgtggga gcgtatccgc gtcgcgtacg aaagcgatca
     5281 gccggtagcc ggtatcctca ccaagaagat caagggcggc gtcgtcgtcg atctcatggg
     5341 tgtggacgcc ttcctgccag gctcgcagat cgcgctccgc cgcgttccga acgtggacga
     5401 gcttctcggc cagactttcg atttcaagat catcaagctc aacaagcgcc gccgcaacat
     5461 cgtcgtttcg cgccgcgtga ttctcgagca ggagcgcgca ggcaagcgcg agcgcttgat
     5521 gaaggagctt cagaaggatc agatccgaaa gggcatcgtc aagaacatca ccgacttcgg
     5581 tgcattcatc gatctcggcg gcgtggacgg attgcttcac atcaccgaca tgtcgtacgg
     5641 ccgcgtcacg catccgtccg agatggtgca catcggccag gagctcgagg tcaaggttct
     5701 cgacatcgat tgggagcgcg agcgcatctc gctcggactc aagcagctcc agagctaccc
     5761 gtggcaggac gtcgcggaca agtatccggt cggcacgcgc gtgtcgggca aggtcgtctc
     5821 gatcaccaac tacggcgcgt tcatcgagct ggagccgggc atcgaaggcc tcgttcacat
     5881 cagcgagatg agctggactc gcaacgttcg tcatccaagc aagatcgttt cgatcggcga
     5941 gaccatcgag gcagtggtgc tcaaggtcga tccgtcggaa gagaagatct cgctcggcat
     6001 gaagcagacc gaagaagatc cgtggatgac gctgccgcag cgttatccga tcggcatgcg
     6061 tctcacgggc aaggttcgca acctcacgag cttcggtgca ttcgtcgaga tcgagcctgg
     6121 catcgacggc ctgattcacg tctccgacat gagctggacg cgtcgcgtgc agcatccgtc
     6181 ggaagtgatc aagaagggcg atacggtgga cgtggtggtg ctcaacatcg atccggagaa
     6241 caagcgcatc tcgctcggcc tcaagcaggc agtcgaggat ccgtggctcc gcattggtga
     6301 gacgtacccc gtcggcaccg agctgcgtgg acatgtcgtg cgcctgatgg acaagggcgt
     6361 cgtcgtggac atcggcaacg acatcgaagg attcgttccg aacagccagc tcaacttcgg
     6421 caacccggtc aacagcccgg ccgacatcgt gtacgaaggg atgaatcttg acctgcgtgt
     6481 tctcgaggtc gatccgatcc accgccgcat cgtgctcgcg gtcaccgcaa ttccagaaga
     6541 gcagccaccg cgtccggcag agccgagcaa ggtgattccg atggagaccg aggagtacag
     6601 cgtatcggat tacgctgccg acataccggc agttcttccg gcaacgtacg acgaagagta
     6661 attaatgacg atgcgcgata agctcgcgct tctggagcaa cgccgcgccg agtctgaact
     6721 cggtggcggc gttgctcgta tagaggccca gcacaggaag ggaaagctct ccgcacgcga
     6781 gcgaatcgat cttctggtgg acgagggatc gttcaccgag ctcgatcgct tcgtcgtcca
     6841 ccgcagcacc gacttcggtc tggaagagca gaagtattac ggcgatggtg tcatcaccgg
     6901 atggggccgc atcgacgggc gattggttta cgtgttctcg caggacttca ccgtattcgg
     6961 tgggtcgctg tcggaatcgt tcgccgagaa gatcgtcaag gtgatggatc tcgcagtgcg
     7021 taacggcgcg ccggtgattg gactcaacga ctctggcggc gcacgaattc aggaaggcgt
     7081 cgtctcgctg ggcggatacg cggagatatt tctgcgcaac acgctcgcat caggcgttgt
     7141 cccgcagatc tcggcgattc tggggccatg tgccggcggt gcagtgtact cgcccgcgat
     7201 caccgatttc acgtatatgg ttcgacacac gtcgtacatg ttcgtgaccg gtcccaacgt
     7261 tgtgaagacc gtgacgcatg aagacgtcac gatggaagag cttggcggcg ccgatacaca
     7321 catgatgaag tcaggtgtgt cgcacttcac gtacgacagc gagcccgagt gcatcgccgc
     7381 tattcgtgat ctgatgaggt tcattccatc gaacaacatc gacgagccac cgcgtggcgc
     7441 agggactgat ccgcgtgacc ggcgcgacga agcgttgctc gacatcgtgc cggacaacgc
     7501 gaacaaaccg tacgacatgc acgaagtgtt gcgtcgcatc atcgacgacg gcgcatttta
     7561 cgaggtgcag cgcgagttcg cggagaacat catctgcgga ttcgctcacc ttggcggctt
     7621 cagtgtcggg atcgttgcga atcagccggc gatgctggcc ggcgtgctcg acatcaacgc
     7681 ttcgatcaag gctgcgcggt tcattcgatt ctgcgacgcg ttcaacattc ctgtcgtgac
     7741 gttcgtggat gtgccaggtt tccttcccgg cgtagggcag gagcacggtg gaatcatcaa
     7801 gcacggtgcc aagttgttgt ttgcgtattg cgaggcgacg gtgcccaaac tcacagtcat
     7861 tacgcgcaag gcgtacggcg gcgcgtacga cgtgatgagc tccaagcaca ttcgcggaga
     7921 tttcaacgtc gcctggccca cggctgagat cgccgtcatg ggaccgaagg gtgcggtcga
     7981 gattctgttc cggaaggaca tcgtcggcag cgctgacccg gttgcggcaa cggacaggaa
     8041 gattgcggag tacgtggaga aattcgcgca tccgtacgtt gcggcgggcc gcggttacat
     8101 cgacgatatc atcgacccgc gagatacgag gccc
//
LOCUS       DATIMD010000063         6362 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4645085, whole genome shotgun sequence.
ACCESSION   DATIMD010000063 DATIMD010000000
VERSION     DATIMD010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6362
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4645085"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2193
                     /locus_tag="VLI40_01490"
     CDS             <1..2193
                     /locus_tag="VLI40_01490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95871.1"
                     /translation="VYVAALGHLWGPNAERGVFKTTNGGTSWSKVLFIDDTTGAVDLV
                     MDPSNPEVLYAAMWHRLREGGSHMQGVGAGSGIYKTVNGGRTWTKLTDPALANGLPTG
                     DIGRASISISAKHPSTVYAMIAVDRGVTNTSAAPFGGVFKSDDAGAHWTHVNDLAANP
                     HYYYDEIVTDPTNDNHVYMLASPLMVSKDGGHSFENDSLYNVHVDNHALWIDPADSAH
                     MILGNDGGVYTTFDGGKAWEHAALPIGQFYTVAIDSASKPYRVCGGLQDNGVWCGPSA
                     TRDTLGITDADWYSVNGGDGMWVQISRTNPNIIYSESQFGSMSRLDMRTWKRDRIQPM
                     ALDAGGDSGYNYTWGWTTPLALSQHDTATLYVGGNHLFRIHDHGDKDIDWEVVGPDMT
                     RAPREHPEGEGPNTSYHALFSIAESPRTRDVIWTGSDDGLVWLTRDYGKTWTNVTANF
                     PAHAPTHCFVSTIAASHFAEGTAYMTYDCHSRDDYAPHVYKTTNFGKSWSAISAGLPA
                     DAGALTVFEDPYNAQLLWVGTEIGVYVSIDGGSKWRKFGHGLPPVAVDKLAMSYDQRD
                     LVLGTHGRGIWVTNVGPLEEMTDTLLRERAHLFRVSPALQFRYTDTYPSFGSRPFVAK
                     NPPRGASISYYLRDALTGPVDLYILTAKGDTVRKLSGPAYAGLNQVTWDLTSSKPRPR
                     ALGDPTSPADLKRVEPGDYTVTMKVAGKTFTQGIRVEERPADLVRPPR"
     gene            complement(2489..3241)
                     /locus_tag="VLI40_01495"
     CDS             complement(2489..3241)
                     /locus_tag="VLI40_01495"
                     /inference="COORDINATES: protein motif:HMM:NF020419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
                     /protein_id="HSU95872.1"
                     /translation="MMLGGALSRLQAEDQGPAFLVKGGVSLELRLRLKARATKDYDTV
                     FRGERDKLLDALDEAFATPYEGFTFRVTRPHQMTHMTRLDIKVEYQGKTWASIQMEVS
                     SWEGTLLPPEEVPAISLADFGLVGPASLPCLPLTKQVAQKLHAMTELLPDGQPNERVR
                     DLLDLWVLRDLVPPSLALRLICEETFRVRQLQPWPPEIVVPPHWEASFIELARSLELP
                     IDDAEVAATDVRSYVQRIVNASEADERTQRAP"
     gene            complement(3405..4019)
                     /locus_tag="VLI40_01500"
     CDS             complement(3405..4019)
                     /locus_tag="VLI40_01500"
                     /inference="COORDINATES: protein motif:HMM:NF024734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system AbiEi family
                     antitoxin domain-containing protein"
                     /protein_id="HSU95873.1"
                     /translation="MMRDAFATIHEIALDQFGYFTTEQAREAGVNPHAVLMMCRRGTI
                     ERVAHGLYRNPLVPATPLGPYMAASLWPQGVRGVLSHQTALELLGISDADPGKIHLIL
                     PTTFRIRRATPGQYVIHHADLTPSDVTSVEGIPVTTAARAIRDCHADHISPALLRQAI
                     EDGLENGRLSRRDATDLRQTLFKEEISGGPTPAVSGRSDDHRNG"
     gene            complement(4313..>6362)
                     /locus_tag="VLI40_01505"
     CDS             complement(4313..>6362)
                     /locus_tag="VLI40_01505"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HSU95874.1"
                     /translation="VRSIAALALLSSAVALPVSAQQSAPVLPYTPANAPRAIRRDIPL
                     TNMIRRAWEAGTRDSTGRPGRNYWQLWNDYTINARFDAPTATVSGSERVVIHNNSDSA
                     MHEIVLRLDQNIYRANVPRAETVPEITDGMVVTKLTVDGADVDMSDRSNSAGRSPRGR
                     PAPPITRPEATGITQTVATIKLPTPIPAKGTSTIEAEWHFRVPQSLGVRGLRMGAWGD
                     SLYQVGQWYPRVAVFDDLRGWDTDPYLGPSEFYNNYGHFDVKLDMPAGWLVGSTGVLQ
                     NPEQVLTASAREKLSHVLQSDSTINIVSAAERGPGKSTAAGDRLVWHFVADSVGDVAW
                     GTSDRFVWDATRATIPGKGVIPINIFYEPGNTQKYVTAGPTARHALEFYSKLWMPYTY
                     PLLSMVDGPEGGMEYPMFIMSSAGASDHETGHQWWPMMVGTNETWYGFMDEGFNQYMN
                     RLSRFDRLGQTPNVDSLGQSYGRTSGNEREAPLMWDANYGGPMYSFQAYGKAPLMLSM
                     LGGIVGDSAVWHAMSDYAKAWRFKHPTPWDYALFMDNSLHKDLSWFWYYWLFTTESVD
                     GSIASVKTAGARTTVVVRQDGAMPSPVVLQVKFAATGPAIRAMKNAKMTDANTAIVTW
                     PVDVWFNGSRTYNAVLDFGGRKIESITLDPGRRFPDRDPSDNVWPRAGGAAAGATQRQ
                     "
BASE COUNT         1263 a         1921 c         1932 g         1246 t
ORIGIN      
        1 gtgtacgtag ctgcacttgg acacctgtgg ggaccgaatg cagagcgcgg cgtcttcaag
       61 acgacgaacg gcggcacatc gtggagcaag gtcctgttca tcgacgacac caccggcgcg
      121 gtcgacctcg taatggatcc atccaatccc gaggtgctct acgcagcgat gtggcaccgg
      181 ttgcgcgaag gcggatcgca catgcagggc gtcggcgcgg gaagcggaat ctacaagacg
      241 gtgaatggtg gacgcacgtg gacgaaactc acggatcccg cactcgccaa cggattgcca
      301 acgggcgaca tcggtcgcgc gagcatctcg atatccgcga agcacccctc gacggtatac
      361 gccatgatcg ccgtggatcg gggcgtcacc aacacatccg ccgcaccgtt cggtggagtt
      421 ttcaaatcgg acgatgccgg agctcactgg acgcacgtca acgacctcgc cgcgaatccg
      481 cattactact atgacgagat tgtcaccgat ccgaccaacg acaaccacgt gtacatgctc
      541 gcgtcgccgc tcatggtatc gaaggacggt gggcattcat tcgagaacga ttcgttgtac
      601 aacgttcacg tcgacaacca cgcactctgg atcgatcccg ccgacagcgc ccacatgata
      661 ctcggcaacg acggcggcgt gtacaccacg ttcgacggcg gcaaggcctg ggagcatgcg
      721 gctcttccca tcggccagtt ctacaccgtc gccatcgata gcgcgtccaa accgtatcgc
      781 gtctgcggag gactgcagga caacggtgtc tggtgcgggc cgagcgccac gcgcgacacg
      841 ctcggtatta ccgacgccga ctggtacagc gtgaatggcg gcgatggaat gtgggtgcag
      901 atatcacgca ccaatcccaa catcatctat tcggaatcac aattcggcag catgtcgcgc
      961 ctcgacatgc gcacatggaa gcgcgatcgc atccagccga tggcgctcga tgcgggcggc
     1021 gactccggct acaactacac ctggggctgg acgacgccac tggcgctgtc acagcacgac
     1081 accgcgacgc tgtacgtcgg cgggaatcat ctcttccgca ttcacgatca cggcgacaag
     1141 gatatcgatt gggaggttgt cggtcccgac atgactcggg ccccacgtga gcatccagag
     1201 ggtgagggac ccaatacatc ctatcatgcg ctgttctcga tcgccgagag cccgcgcacg
     1261 cgcgacgtga tatggacagg cagcgatgat ggactggtct ggctcacacg cgattacggc
     1321 aagacatgga cgaacgtcac cgccaacttt cccgcgcacg cgccgacgca ctgctttgta
     1381 tcgacgatcg ccgcgagcca tttcgcggaa ggcaccgcgt acatgacgta cgactgtcac
     1441 agtcgcgacg actacgcgcc gcacgtgtac aaaaccacca acttcgggaa gagctggagc
     1501 gcgatctcag ccggcctgcc tgccgacgct ggtgctctca ccgtgttcga ggatccatac
     1561 aacgcgcaat tgctgtgggt aggaaccgag atcggggttt atgtatccat cgacggtgga
     1621 tcgaagtggc ggaaattcgg tcacggcctg ccaccggtag ccgtcgacaa gctcgcgatg
     1681 tcgtacgatc agcgcgatct tgtgctcggt acgcacggcc gcggaatctg ggtaacgaac
     1741 gtcggtccgc tcgaagagat gaccgacaca ttgctgcggg agcgcgcgca tctgtttcgt
     1801 gtttcgccgg ctctccagtt ccgctacacc gatacgtatc cgtcgttcgg aagccgaccg
     1861 ttcgtcgcga agaacccgcc gcgtggcgca agcatctcct attatctgcg tgacgcactc
     1921 acgggtccgg tcgacctgta catccttacc gcgaagggcg atacggttcg caagttgagc
     1981 ggaccggcct acgccggtct caatcaggtt acctgggatc tcacgagcag caagccgcgg
     2041 cctcgcgcgc tcggagatcc gacgtcaccc gcggacctca agcgcgtcga gcctggtgac
     2101 tacacagtca cgatgaaggt tgcgggtaaa accttcacgc agggaattcg ggtcgaggag
     2161 cgtccggcag atctggtgcg accaccgcgg taacgcacgt taatgtgcga tccagatagt
     2221 cgcgatgcgt catcatccag ttcagtatga ctcatgagac tgaaaatgag gaatccattt
     2281 caaggtatga ggtagatgct ggttgcaatg agagacaagg cgaggaagcg cttgcgatca
     2341 tcactggcgg ggtggttcgt gcatccgctg gaactcccat gatctgaaca atcagtttcg
     2401 tctgtgtccg cattcgttcc ccccaccgtc gttatacaca cagccaattc atgccggtcg
     2461 tgcgacgact atctgtacac aggggcactc acggtgctcg ctgggtgcgc tcatccgctt
     2521 cactagcgtt gactatccgc tgcacgtacg agcgcacatc agtagcagct acttccgcat
     2581 cgtcgattgg tagttcgagt gagcgagcga gttcaatgaa ggacgcttcc cagtgcgggg
     2641 gcacgactat ctctggcggc cacggctgca actgtcggac ccggaacgtt tcctcacaga
     2701 tcaggcggag tgccagtgag ggcgggacca ggtcgcggag cacccagaga tcgagtaggt
     2761 cgcgtacgcg ctcgttgggc tggccatccg ggaggagctc cgtcatcgcg tggagcttct
     2821 gcgcaacctg ctttgtcagt gggaggcatg ggagtgacgc agggcccacg aggccgaaat
     2881 ccgcgagact gatcgcgggc acttcctctg gcggaagcag tgtcccttcc caggaagaca
     2941 cctccatctg aatggacgcc caagttttcc cctggtactc gaccttgatg tcgagccggg
     3001 tcatgtgcgt catctgatgt ggcctggtta cacggaaggt gaagccctcg tacggcgtag
     3061 cgaacgcttc gtccagcgca tcgaggagct tgtcacgctc gccccggaag accgtgtcgt
     3121 agtccttggt tgctcgcgct ttgagtcgga ggcgcagctc cagcgatacg ccacctttca
     3181 caagaaatgc tggcccctga tcctcggctt ggaggcggct cagtgcgccg cccagcatca
     3241 tgaacgccac ccagcgctgt acgcgattag gagcgaggct gtgatattcg gcataccggt
     3301 tgaccgcgtc ctgcagcgct cggtgattcg gcggcggaat gcgcttgggt ggtcggtagg
     3361 gttctcgcga gggcgaatta ccaggcgaat tactatccgt gggatcagcc attgcggtgg
     3421 tcgtcggatc tgccgcttac ggcaggggtc ggccctccgg agatctcctc tttgaacagt
     3481 gtctgacgaa gatctgtcgc atcgcgccgc gatagtcgcc cgttctcgag gccatcctcg
     3541 atcgcctggc ggagtagtgc ggggctgata tgatcggcgt ggcagtcccg gatagcgcgc
     3601 gcggccgtgg tcacggggat gccttcgact gaggtcacgt cacttggagt gaggtcggca
     3661 tgatgaatga catactggcc gggcgtagca cgccggatac ggaatgtcgt aggtagaatg
     3721 agatggatct tgcccgggtc ggcgtccgag attccgagga gttccaaggc cgtctggtgc
     3781 gacaggacac cgcggactcc ctgtggccag agcgaagcag ccatgtaagg gccgagtgga
     3841 gtggccggaa cgagggggtt ccgatagagc ccgtgcgcca cccgctcgat ggtgccacgc
     3901 cggcacatca tcaggacggc gtgtgggttg acgccggcct cccgcgcctg ctcagtggta
     3961 aaatatccga actgatcgag ggctatttca tggatcgtgg caaatgcgtc gcgcatcata
     4021 ggacggacaa gacctcacca gacgttacat tttgtcatgg atcatgcagt taggataaaa
     4081 tgtaacgtaa tgttacatta tgtccacccc aaaaatagcc gaaatggtcg tcactataag
     4141 cgcaatcgac gcgaaatgcg gaagagccat caaaccgagt gagttccaga cgttgtagta
     4201 gaggacgctg tcggcccgga tctccggagc gttgcggtat tcggtgtggc tgtgatgagt
     4261 gcacgagaaa aaaacggagc cactatcgat attgatcgtg gctccgttcg cgctactggc
     4321 gttgcgtagc tccggccgct gcgccacccg cccgcggcca cacgttgtcg ctcggatccc
     4381 gatccgggaa ccgacgccct ggatccagtg ttatcgattc tatcttgcgc ccgccgaaat
     4441 ccagcaccgc gttgtacgtc ctgctgccgt tgaaccagac gtcgaccggc cacgtaacta
     4501 tcgctgtgtt cgcgtctgtc attttcgcgt tcttcatcgc gcggatcgcc ggaccggtcg
     4561 ccgcgaactt cacttgcaga accaccggcg aaggcatcgc gccgtcctga cgaacgacaa
     4621 cggtcgttcg tgcaccagcg gtcttgacgc tcgcaatcga tccgtcgacc gattcagtcg
     4681 tgaacaacca gtagtaccag aaccagctga gatccttgtg cagcgagttg tccatgaaca
     4741 gcgcgtaatc ccatggcgtc ggatgcttga agcgccatgc cttcgcgtag tcactcatcg
     4801 catgccagac tgcgctgtca ccgacgatac cgcccagcat ggacagcatg agcggcgcct
     4861 tgccgtaggc ctggaaggaa tacatcgggc cgccgtagtt cgcgtcccac atgagcggtg
     4921 cctcacgctc gttaccactg gtacgaccgt atgactgtcc cagactgtcg acgttcggcg
     4981 tctggccaag tcggtcaaaa cgcgagagac gattcatgta ctgattgaat ccctcgtcca
     5041 tgaagccgta ccacgtttcg ttggtgccga ccatcatcgg ccaccactgg tgaccggttt
     5101 cgtgatcgga cgcaccggcg ctcgacatga tgaacatcgg atattccatt ccgccttcgg
     5161 gtccgtccac catactgagc agcggatagg tgtacggcat ccacaacttg gaatagaact
     5221 cgagtgcgtg acgcgcggtc ggaccggccg tcacgtactt ctgcgtgtta cccggctcgt
     5281 agaagatgtt gatgggaatg acgcccttcc ccgggatcgt cgcgcgcgtt gcgtcccaca
     5341 cgaaacggtc cgacgtaccc catgcaacgt caccaacact gtcagcgacg aagtgccaga
     5401 cgagcctgtc gccggccgca gtagatttgc ccgggccacg ctcggccgcg ctcacgatgt
     5461 tgatcgtcga gtcggattgc agcacgtgtg acagcttttc gcgcgcgctc gctgtgagca
     5521 cctgctccgg attctgcagc acgccggtcg atccaacgag ccagcccgcc ggcatgtcca
     5581 gcttcacatc gaaatgaccg tagttgttgt agaactcgga cggtccgaga tatggatcag
     5641 tgtcccagcc acgcagatcg tcgaacactg ctacgcgtgg ataccactgc ccgacctgat
     5701 acaacgagtc gccccacgcg cccatgcgca gtccgcgaac gcccagcgac tgcggaacac
     5761 gaaagtgcca ctcggcttcg atcgtgcttg ttcccttcgc ggggatcggc gtgggaagct
     5821 tgatcgtcgc aacagtctga gtgataccgg ttgcttcagg gcgagtgatc ggcggagccg
     5881 gccggccgcg cgggcttcgt cccgccgagt tgcttctgtc gctcatgtcc acgtcggcac
     5941 cgtcgacagt gagcttggtc acgaccatcc cgtccgtgat ctccggaacc gtttccgcac
     6001 gcggcacgtt ggcgcgatag atgttctgat ccagtcgcag cacgatctca tgcattgcgg
     6061 aatcactgtt gttgtggatc accacgcgct cgcttccact cacagtcgcc gtgggtgcgt
     6121 cgaagcgtgc attgattgtg tagtcgttcc acagttgcca gtaattgcgc ccgggacgtc
     6181 ctgtcgaatc ccgtgtcccg gcttcccacg ctcggcggat catgttcgtg agcgggatgt
     6241 cccgtcgtat cgcgcgcggc gcgttggctg gcgtgtacgg aagaaccggg gcggattgct
     6301 gcgcggaaac gggcaacgcg actgcgctgg agagtagcgc gagcgcggcg atggatcgaa
     6361 cg
//
LOCUS       DATIMD010000064         1616 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1756967, whole genome shotgun sequence.
ACCESSION   DATIMD010000064 DATIMD010000000
VERSION     DATIMD010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1756967"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1201)
                     /locus_tag="VLI40_01510"
     CDS             complement(<1..1201)
                     /locus_tag="VLI40_01510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95875.1"
                     /translation="MTAARRVARVQSQLRVVALISAFLWGAAILCAVLAVELVIGNWT
                     RGRMPPGWDWNIALGIAVIAALIVLWRARFVLSARRVALWMEERAPSLQYALITASDP
                     LVTTDKSLLEAEIERSNIDTFVRPAVLTPVIYSGVALSVMAGAFAAALTLASSRANAV
                     AHDGVAHIGVNAPTGNRLLDLSVRVTAPAYAGAKVQEIRDPSGVTALAGSHVTVRGNG
                     TPDGIGAKLADHDIHVSGRENWEVSFTVPASATTVSFTDRDYDRVIAIIPIADQAPVV
                     TMTQPTRDTVWRRVPTGAISFAAHATDDLGLADGHLEYTVTTGSGEIFKSHTGTFGAS
                     RLGGTTTSELRGTLSLPQLGLTEGAILSIRAIVSDNNTLTGPATSTSDTRTFRVARAD
                     EYDSLAVD"
     gene            complement(1198..>1616)
                     /locus_tag="VLI40_01515"
     CDS             complement(1198..>1616)
                     /locus_tag="VLI40_01515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95876.1"
                     /translation="VVVAPFERRWRFVSDSLAHSRVIARWIDGDPAAIERDSGSTCTR
                     SIAVPIDSAGDMLLRPSFIDFRAELAKPCRHVTPALDPAAGARLAATGPLAAAAQFPP
                     SVDVDSPLAGWLAAIAIALAIIEMILRRSGNTGSEQ"
BASE COUNT          315 a          521 c          495 g          285 t
ORIGIN      
        1 catccaccgc aagcgaatcg tattcgtcgg cacgtgcgac gcggaacgtg cgcgtatcgg
       61 atgtggacgt cgccggccct gtcagcgtgt tgttgtcgga tacgatcgct cgtatcgaaa
      121 gaatcgcacc ttccgtcagg ccgagctgcg gtaacgaaag tgtcccgcgc aactcgctcg
      181 tcgttgtgcc gccgagtcgc gacgccccga atgtgcccgt gtgcgacttg aatatctcgc
      241 ccgagccggt cgttaccgtg tattcgaggt gtccatcggc cagtccgagg tcgtccgtcg
      301 cgtgtgcagc aaaggaaatg gctcccgtcg ggacgcgccg ccatactgta tcacgagtgg
      361 gttgggtcat cgttacgact ggcgcctgat ccgcgatcgg tatgattgca atcacccggt
      421 catagtcgcg atccgtgaac gaaacggtgg ttgccgacgc cggcacggtg aagctgactt
      481 cccagttctc tcgtccggaa acgtggatgt cgtggtccgc cagcttcgcc ccgattccgt
      541 ccggcgttcc attccctcgc acagttacat gacttccagc aagtgcggta acaccggatg
      601 gatccctgat ctcctgcact ttcgcgcctg cataggccgg cgctgtgact cgaacggaga
      661 gatcaagaag tctgtttcct gttggagcat tcacaccgat gtgagcgacg ccgtcgtgag
      721 caacagcatt cgcgcggctg gacgccagcg tcagcgccgc ggcgaacgcg ccggccatca
      781 ccgacaacgc aacgccggaa tagatcaccg gcgtgagcac ggcgggacga acgaacgtat
      841 cgatgttcga ccgctcgatc tccgcctcga gcaggctctt gtcggtcgtc accagcggat
      901 cgctcgccgt gatcaatgcg tactgaagcg acggcgcgcg ctcttccatc cagagcgcga
      961 cccgtcgcgc agaaagaacg aaccgcgcgc gccacaggac gatgagcgcg gctatcacgg
     1021 cgataccaag cgcgatattc cagtcccagc cgggcggcat gcgcccgcgc gtccagttgc
     1081 cgatgacgag ctccacggct agcacggcgc acaggatcgc cgctccccac agaaatgctg
     1141 aaatgagtgc aacgacgcgc agttgagact gcacacgtgc gacgcgccgc gcagcagtca
     1201 ctgttcgctc cctgtatttc cggagcgacg cagaatcatc tcgatgatcg ccagtgcgat
     1261 agcgatcgcc gcaagccatc ccgcaagcgg tgagtcgaca tccacggacg gcggaaattg
     1321 cgctgcagca gcgagaggtc cggtcgccgc caacctcgca ccggccgccg gatccagcgc
     1381 tggtgtgaca tggcggcatg gcttcgccag ttccgcgcga aagtcgatga agctcgggcg
     1441 taacagcata tctccagcgc tgtctatcgg aaccgcgatg gagcgcgtgc acgtggatcc
     1501 gctgtcccgc tcgatcgcag caggatcgcc atcgatccat cgggcgatca ctcgcgagtg
     1561 agccagagaa tcagagacga agcgccagcg ccgctcgaac ggtgcgacga cgacgt
//
LOCUS       DATIMD010000065         3663 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1181118, whole genome shotgun sequence.
ACCESSION   DATIMD010000065 DATIMD010000000
VERSION     DATIMD010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3663
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1181118"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1440
                     /locus_tag="VLI40_01520"
     CDS             <1..1440
                     /locus_tag="VLI40_01520"
                     /inference="COORDINATES: protein motif:HMM:NF025714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4403 family protein"
                     /protein_id="HSU95877.1"
                     /translation="QARVTMTPRRSRMALSLLLVAPLLQACRRESPATPSVARLDSLP
                     TPPPLPLSHFNVPLVYDYTPVLAVVERAVPRRFGSIDSVRMVGNDPNRHYAYEAVRGP
                     FTTFVRDNEVHLRATLSYAARGYFKPRFGPTIGAGCGGDSAAERPRVTVELITPLTLT
                     PDWHLASHARIGRLGPTSSADRDRCTVSIIRYDVTERVTAAARDALNAHLPDIDRKIS
                     RVDLTGRFEEWWGLLNKPIRLTRNVWLLLGPERLRMGDVSGAGNDLVVDAGLDARPRI
                     VIGAEPHVEIPPLPPLARDTAATGFRIVIGGLINYPDASATITDALKGKSITEGGKTV
                     TVRSARVSPLPQGRLALAVTFTGDANGTLVFAGKPVYDRRAGELRVPDLDYDLNTDSD
                     LIRAYSWLRSDALRELFIDKARLPADLLIDRGRALLTDGLNRKLGDAVTLSARVDSVD
                     VAGIYVTARGIVVRAVASGNAGMQVRQGK"
     gene            complement(1454..2068)
                     /locus_tag="VLI40_01525"
     CDS             complement(1454..2068)
                     /locus_tag="VLI40_01525"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0106141 - flavin prenyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin prenyltransferase UbiX"
                     /protein_id="HSU95878.1"
                     /translation="MSGAGSHLPFTVAITGASGAPYAVRLLEQLCAAGQRISLIVSGH
                     GMRLLSTETGIESVAALRDAVGGRGWDELVTVNDDADRGAAPASGSARSAGMVICPCS
                     MGTLSAIAAGSSRSLIERAADVTLKERRKLILVPRETPLSSIHLENMLKLSREGVVIL
                     PASPGFYHRPASIADLVDFVVARVMDQMGVQHSVGRRWASDQDM"
     gene            complement(2065..2961)
                     /locus_tag="VLI40_01530"
     CDS             complement(2065..2961)
                     /locus_tag="VLI40_01530"
                     /inference="COORDINATES: protein motif:HMM:TIGR01475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008412 - 4-hydroxybenzoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA-like polyprenyltransferase"
                     /protein_id="HSU95879.1"
                     /translation="MTAREGQTFHGVSRVVRYVNFVKLPHTLFALPFALVGVVLASYH
                     TAVTMREVGWVVIAFTAARFAAMGFNRIADREIDALNPRTQMRELPSGALGVTEAMIA
                     VGVACGVFLFAAFELNHVCFLLAPIALAWVFFYSFTKRFTRWSHVVLGVGLSIAPVGG
                     YLAVTGSWASPWWMLCALAIAVATWVAGFDILYALQDVEFDRGNALHSIPVRWGERGS
                     LIAARTLHVVTIIALASVGFAVGGGAIYTAGVAVAAGLLLYEHTLVKPGDISRLDAAF
                     FTMNGIISIVYFGFVFAERVVS"
     gene            complement(2958..>3663)
                     /locus_tag="VLI40_01535"
     CDS             complement(2958..>3663)
                     /locus_tag="VLI40_01535"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UbiD family decarboxylase domain-containing
                     protein"
                     /protein_id="HSU95880.1"
                     /translation="RAVTCDLEVPAEADFVFEGYIDPSEDLVIEGPFGDHTGFYSEAD
                     YYPRVHITAVTMRRDAIYSTTIVGVPPMEDYYLGHATERIFLPLLKLTIPEIVDYHMP
                     AEGIFHNLVFVSIDKQYPGQAYKVMNAMWGQGLMSLAKVLVVVDKDVDVRNPFEAWWV
                     ALNNIDPERDTRFTMGPMDVLDHSSRAFTYGSKMGIDATRKFPEEGFTRNWPRRIAMD
                     DATRARVDAMWSELGL"
BASE COUNT          746 a         1215 c         1051 g          651 t
ORIGIN      
        1 caagcccgag tgaccatgac gccgcgcaga agtcggatgg cgctgtcgct gcttctcgtc
       61 gcgcctctct tgcaggcatg ccgtcgggag agccccgcaa ctccatcggt agctcggctc
      121 gattcgcttc cgaccccgcc accgctccct ctatcccact tcaacgttcc cctggtgtac
      181 gattatacac cggtgcttgc ggtcgtggag cgtgcagttc ccagacgatt cggatcgatc
      241 gatagcgtcc gcatggtggg gaacgaccca aatcgacact atgcatacga ggccgtacgc
      301 ggtccattca cgacattcgt gcgcgacaac gaagtacatc tgcgcgcgac gctgtcgtac
      361 gcagcccgcg gctatttcaa gccgcgcttc ggtcccacaa tcggcgccgg atgcggcggc
      421 gactcagctg ccgaacgtcc gcgcgtgaca gtcgagctca tcacgccgtt gacgctcacg
      481 cccgactggc acctcgcgtc gcacgcgcgc atcggtcgac tcggtcccac gtcaagcgcc
      541 gaccgagacc gctgcacggt gagcatcatt cgatatgacg tcaccgagcg cgtgaccgcc
      601 gcggcgcgcg acgcactcaa cgctcatctg ccggacatcg accgcaagat atcgcgcgtc
      661 gatctgaccg gccgttttga ggaatggtgg gggcttctca acaaaccgat tcgactcacc
      721 cgcaatgtgt ggcttctgct cgggcccgaa cggctccgca tgggcgatgt aagcggcgcg
      781 ggcaacgacc tggtcgtcga tgccggcctc gatgcgcgcc ccagaattgt catcggcgcc
      841 gaaccgcacg tggagattcc acctctcccg ccgctcgcgc gcgacaccgc cgcgacggga
      901 tttcgcattg tgatcggtgg cctgatcaac tatccggacg cctcggcgac gatcacggac
      961 gcactcaagg gcaagtcaat aaccgaaggc ggcaaaaccg tcacggtgcg cagcgcacgc
     1021 gtctctccgc ttccacaggg tcggctcgcg cttgcagtca cgttcactgg cgacgccaac
     1081 ggtacactgg tctttgccgg caagccggtt tacgatcgcc gcgcgggaga attgcgtgtc
     1141 ccggatctcg attacgatct gaacacggac agcgacctga tcagggccta cagctggctc
     1201 cggtccgatg cgctgcgcga actgttcata gacaaggctc gccttccagc cgatctcctg
     1261 atcgacaggg gacgggcgct gctcaccgac ggtctcaatc ggaaactcgg cgatgctgta
     1321 acgctctcgg cgcgcgtgga ctcggtcgat gtcgccggga tatatgtaac cgcgcgcgga
     1381 atcgtcgttc gcgctgtcgc gagtggcaac gccggaatgc aggtgagaca gggaaaatag
     1441 cgtaaccgaa cggttacata tcttgatcgc tggcccagcg ccggcccacc gaatgctgga
     1501 cacccatctg gtccatcaca cgggcgacga cgaaatccac cagatcagct atcgatgcag
     1561 ggcgatgata gaagccaggc gacgcgggta gaatgacaac accttccctg ctcagcttca
     1621 acatgttctc gagatgaatg ctcgatagcg gcgtctcacg cggcaccagg ataagcttgc
     1681 gtcgctcctt gagtgtcacg tccgccgcgc gctcgatgag tgagcgtgac gaacccgcgg
     1741 caatggcgct cagcgttccc atcgagcagg gacagatcac catcccggca ctgcgcgccg
     1801 acccggacgc aggggccgcg ccgcgatcag cgtcgtcgtt gaccgtgacg agctcatccc
     1861 atccgcgccc gccaacagca tcacggagtg ccgccaccga ttcgattccc gtctccgttg
     1921 acagcagacg catgccatgg ccggaaacga tcaacgatat gcgttgacct gcagcgcata
     1981 attgctcgag caatcggacg gcatacggag cgccggacgc acccgtgatc gccaccgtga
     2041 atggaaggtg cgaccctgcg ccactcatga tacgacccgc tccgcgaata cgaatccgaa
     2101 atacacgatg ctgatgatac cgttcatggt gaagaacgcg gcatcgagcc ggctgatatc
     2161 acccggtttc acaagcgtgt gctcgtacag gagaaggccg gctgcaacgg cgacacccgc
     2221 ggtgtagatc gcgccaccgc cgacagcgaa tccgaccgac gccagcgcga tgatcgtgac
     2281 cacgtgcagc gtgcgcgcag cgatcagcga gccgcgctcg ccccacctga ccggaatcga
     2341 gtgcaacgcg ttgccgcgat cgaactcgac gtcctgcagt gcatacagaa tgtcaaatcc
     2401 ggcaacccag gttgctacgg cgatcgcgag cgcgcacagc atccaccacg ggcttgccca
     2461 cgatcccgtc acggccagat atccaccaac cggcgctatg gacagtccga ctccaagcac
     2521 gacgtgcgac cagcgcgtga accgcttggt gaagctgtag aagaaaaccc atgccagcgc
     2581 gatcggcgcc agcagaaagc aaacatggtt cagctcgaac gcggcgaaca gaaatacgcc
     2641 gcatgcgact cccaccgcta tcatcgcttc cgtaacgccg agtgcgccgg acggaagctc
     2701 gcgcatctgc gtgcgcggat tcagtgcgtc gatctcacgg tccgcgatcc tgttgaatcc
     2761 catggcggca aagcgcgcag ccgtgaacgc gatcacgacc caaccgacct cgcgcatggt
     2821 tacggccgtg tgataactcg cgagcacaac cccgacaagc gcgaacggca atgcgaaaag
     2881 ggtgtgcgga agcttcacga agttgacgta tctgaccaca cgcgacacgc cgtggaacgt
     2941 ctgcccttca cgtgctgtca taggcccagt tcactccaca ttgcatctac ccgcgctctg
     3001 gtggcgtcgt ccatcgcgat cctgcgaggc cagttgcgtg tgaatccttc ttccggaaac
     3061 ttccgcgtcg cgtcgattcc catcttggag ccgtaggtga acgctctgct cgaatgatcc
     3121 agaacgtcca tcggtcccat cgtgaagcgc gtgtcccgct cggggtcgat gttgttcaat
     3181 gcgacccacc acgcctcgaa cggattacga acgtcgacgt ccttgtcgac caccacgagc
     3241 accttcgcga gtgacatcaa tccctgcccc cacattgcgt tcatcacctt gtacgcctgg
     3301 cccgggtact gcttgtcgat cgacacgaaa acgagattgt ggaatatccc ttccgcgggc
     3361 atgtggtagt ccacgatctc cggaatcgtc agcttgagca gcggcaggaa gatccgctcc
     3421 gtcgcgtgac cgaggtaata gtcctccatc ggcggcactc cgacgattgt cgtcgaataa
     3481 atcgcatccc ggcgcatcgt cacagccgtg atgtgcacgc gtggatagta gtcggcctcg
     3541 ctgtagaaac cggtatggtc tccgaacggg ccctcgatca ctagatcttc cgatggatcg
     3601 atgtatccct cgaacacaaa atcggcttcc gccggtactt ccaggtcgca agtcacggcc
     3661 cgt
//
LOCUS       DATIMD010000066         3786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4934696, whole genome shotgun sequence.
ACCESSION   DATIMD010000066 DATIMD010000000
VERSION     DATIMD010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3786
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4934696"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(195..1256)
                     /locus_tag="VLI40_01540"
     CDS             complement(195..1256)
                     /locus_tag="VLI40_01540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95881.1"
                     /translation="MTTRFLVRARVRARSRLLRDKRRVAATTAAMTVAAIVASSVVAC
                     ASARGRPPAAGAEFWGFVAPWDPRSEASAASHDSQLDVLISGFIVLDSATFRPTALYT
                     DSSMRSNPGNHRRMALVTSYHGTRFHPETIRALGSDATVLGQAAGRTAALLGSAGYRG
                     MILDFEGLTPDDLDVLVRVSNAFADSARAHGISPTGMAIPATDTAAYPGRPLLGAVDF
                     LVVMLYDQHWLTSPPGPIASPDWAMRALGMRAADIGSSRVVAAFPIYGYQWRSDSATA
                     IVSFAEAEALARDAHVALQRDPASNTLHAESDGWSVWVSDATLLNSLVRGARRTGITK
                     FALWRLGLEDPRIWTDVVR"
     gene            1306..2109
                     /locus_tag="VLI40_01545"
     CDS             1306..2109
                     /locus_tag="VLI40_01545"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSU95882.1"
                     /translation="MPLSRRPVFVLFLALVAACSNRDKSSAQAVGDTVGAARHAVIVA
                     RSPISYNGGGTVASDGKITGVVSFSGPAPGDTAIIVPADQNGCGKPLTVQLLARSNGK
                     VANVVVWLTDVRQGKPLPNQRRFQLTNDDCAWDPQVQAAVAGGALNVVNYDPLAETVF
                     ATNVATGDTVALAPFTDDGQVIPYDKLLRTPAVLEFSVESRPMSRAWVVVLDQPYFAI
                     TDASGAFTIDSVPPGVHHIRAWHPMLGIADGTVTVTANGTATANLQFHP"
     gene            complement(2119..>3786)
                     /locus_tag="VLI40_01550"
     CDS             complement(2119..>3786)
                     /locus_tag="VLI40_01550"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HSU95883.1"
                     /translation="LLIRATTSNGTPALYIAPATGGAARRVATIAGSVHDARFSPDAS
                     RIAVLYSSPSEEANGPTQATPRDTGAMDTHIDRQHLAIIDVATGKLKVISRPDVYVYE
                     YDWSPNGKEFVVSAANGSGNNNWWIARLDGIDAETGAERAIAKPTVQIAQPTWSPDGK
                     QIAFIGGLMSDQGSTGGDIYTVPAAGGVARDITPNSTVSAGAFRWRGPESILATMWSH
                     GGSEIATVDARTGATAALWSADEAIAAGRARGLPVISATSNGSTVALVRESLSTPPEI
                     WVGPVGHWTQVTHVNTGVTPSWGKSASVHWRSDRFDVQGLLIYPRDFDASKHYPMIVY
                     IHGGPSSAFAPTFIDASAEQAVLSRAGYFVFMPNPRGSYGQGEAFTKANVKDFGHGDL
                     RDVMAGVDTVIARYPVDAKRLGVTGWSYGGFMTMWTITQTNRFKAAVAGAGISNWLSY
                     TGENQISEWMVPFFGATAYEDPAVYAKSSPINFISHAKTPTLIIVGERDAECPSPQSF
                     EFWRGLQHVGVKTQLVVYPDEGHHFANPVHQRDMLNRSVAWFNTYLK"
BASE COUNT          684 a         1218 c         1180 g          704 t
ORIGIN      
        1 ggatggagcg tgtgggtgag cgatgcgacg gtgctcgatt cgctggttcg cggcgcacgc
       61 cgcaccggaa tcaccaagtt cgcactgtgg cgactcggac tcgaagatcc gcggatatgg
      121 accgacgtcg tgcgttgatt catcggatcg tgtgccggat cgacgcgctc gatcgagcgc
      181 gtcgatccga tgaatcagcg cacgacgtcg gtccatatcc gcggatcttc aagtccgagt
      241 cgccacagtg cgaacttggt gatcccggtg cggcgtgcgc cccgaaccag cgaattgagc
      301 aacgtcgcat cgctcaccca cacgctccat ccatccgact ctgcgtgcag cgtgttcgac
      361 gccggatcgc gttgcagcgc gacgtgcgcg tcgcgcgcca gtgcctcggc ctcggcgaac
      421 gacacgatag ccgtcgcgct gtccgagcgc cactggtagc cgtatatcgg gaacgcggca
      481 accacacgcg aactgccgat gtcggcggct cgcatgccga gtgcgcgcat cgcccagtcc
      541 ggcgatgcga ttggtcccgg tggtgacgta agccagtgct ggtcgtacaa catcacaacg
      601 aggaaatcca cggcacccag cagcggacgg cccggatacg ccgccgtgtc ggtagcggga
      661 atcgccattc cggtcggtga tattccgtgc gcgcgtgcgg aatccgcgaa ggcgttgctc
      721 acgcgaacca gaacatcgag atcgtcggga gtgagtccct cgaagtcgag gatcatcccc
      781 cgatagccag cgctgccgag cagcgcggct gtgcggcctg cagcctgccc gagcacggtt
      841 gcgtcgcttc cgagcgcgcg aatcgtttcc ggatggaacc gcgtcccatg atacgatgtg
      901 acgagcgcca tccgccgatg attgccggga ttgctgcgca tcgacgagtc ggtgtacaga
      961 gcggttggcc ggaacgttgc gctatccagc actatgaacc cggagatgag cacgtcgagc
     1021 tgcgaatcgt gcgacgcggc gctggcttcg ctgcgcggat cccatggggc gacaaagccc
     1081 cagaattcgg cgccggccgc cggagggcgt ccacgcgccg atgcacaggc cacgacgctc
     1141 gacgcgacga tcgcggctac cgtcatggct gcagtcgtgg cagccacacg gcgcttgtcg
     1201 cgcaacagcc ggcttcgggc tcgtactcgg gctcgtacca ggaatctggt cgtcacggtt
     1261 ggtaaattag cagactcatc cctgttcgca ctcgaagtcg atcgcatgcc cctttccaga
     1321 cgtcctgttt tcgtgttatt cctggcactc gtcgccgcct gctcgaaccg cgacaagagc
     1381 tctgcccagg cggtcggtga taccgtgggc gccgcgcgcc acgcggtgat cgtcgcgcgg
     1441 tcgcccatct cgtacaacgg cggcggcacg gtggcgagcg acggcaagat caccggagtg
     1501 gtctccttca gtgggccggc acccggtgac acagcgatta tcgtcccggc ggaccagaac
     1561 ggatgcggca agccactcac cgtccagctt ctggcgcgaa gcaatggcaa ggtcgcgaac
     1621 gttgtcgtct ggctcaccga cgtgcgtcag ggaaagccac tgccgaacca gcggcgcttc
     1681 cagttgacga acgacgattg cgcatgggat ccgcaggtcc aggcggcggt cgctggcgga
     1741 gcgctcaacg tcgtgaacta cgatccgctc gccgagaccg tcttcgcgac caacgtggca
     1801 accggggaca ccgtcgcgct cgcgccattc accgacgacg gacaggtgat tccatatgac
     1861 aagctgctgc gcacgccggc cgtgctggaa ttttccgtgg agagccggcc gatgtcgcgt
     1921 gcctgggtgg ttgtgctcga tcagccctat ttcgcgataa cggacgccag cggggccttc
     1981 acgatcgaca gcgttccgcc gggcgtacac catatccgcg catggcatcc gatgctcggc
     2041 atagcggacg gaaccgtcac cgtcaccgcg aatggaactg caacggccaa tctgcagttc
     2101 catccgtgac gatgacgcct atttgagata cgtgttgaac cacgcgacag atcggttgag
     2161 catgtcgcgt tgatgcaccg ggttggcgaa atgatgtccc tcatcgggat agacgaccag
     2221 ctgcgtcttc acaccaacgt gctgcagccc gcgccagaat tcgaacgatt gcggtgaagg
     2281 gcactcggcg tcgcgctcac caacgatgat caacgtcggc gtcttcgcgt gcgagatgaa
     2341 attgatcgga gagctcttcg cgtagaccgc gggatcttcg tatgcggtag cgccaaagaa
     2401 gggaaccatc cattcgctga tctgattctc gcccgtatag ctgagccagt tcgatatgcc
     2461 cgctccggcg acggctgcct tgaagcgatt cgtctgcgtt atggtccaca tggtcatgaa
     2521 gccgccatag ctccatccgg taacaccaag gcgctttgca tccaccggat agcgcgcgat
     2581 cacggtgtcg acaccggcca tcacgtcacg caggtcgccg tgtccgaaat ccttcacgtt
     2641 cgccttcgtg aatgcctcac cctgaccata gctcccgcgc ggattgggca tgaacacgaa
     2701 gtaacccgct cgcgacagca cggcctgttc cgccgatgca tcgatgaacg ttggtgcaaa
     2761 ggccgatgac ggaccgccat ggatgtagac gatcatcggg taatgcttgc tcgcgtcgaa
     2821 gtcacgcgga tagatgagaa gcccctgcac atcgaatcgg tcgctgcgcc agtgtacgct
     2881 cgccgacttg ccccaggacg gagtgacgcc ggtgttgacg tgcgtgacct gcgtccagtg
     2941 accgactggc ccgacccaga tctccggcgg cgtgctcaac gattcgcgca ccagtgcaac
     3001 ggtggatccg ttggatgtcg ccgaaattac cggcaggcct cgcgcccgtc cggcggcgat
     3061 tgcttcatcc gccgaccaca acgctgcagt ggcaccggtc cgtgcgtcga ccgtcgctat
     3121 ctccgatccg ccgtgcgacc acatcgtcgc gagaatcgat tcgggaccgc gccacctgaa
     3181 tgcgccggcc gacacggtgc tgttcggcgt gatgtcgcgt gccacaccac cggcggcggg
     3241 aacggtatag atgtcgccac cggtggaacc ctggtcgctc atcaagccgc cgatgaatgc
     3301 gatctgcttt ccatcgggcg accatgtggg ttgcgcgatc tgcaccgtgg gcttcgcgat
     3361 tgctctttcc gcaccggttt ccgcatcgat cccatcgagg cgcgcaatcc accagttgtt
     3421 gttgcccgac ccgttggccg cgctcacgac aaattccttg ccgttcggcg accagtcgta
     3481 ctcgtacacg tagacatcgg gtctcgaaat caccttcagc tttccggtcg cgacgtcgat
     3541 gatcgcaagg tgttgccggt cgatatgcgt atccatcgcg cccgtatcgc gcggagttgc
     3601 ctgagttggt ccgttcgcct cttccgatgg cgatgaatac agaaccgcga tgcgcgacgc
     3661 atctggggag aaccgcgcat cgtgcaccga tcctgcgatc gtggcaactc gacgcgccgc
     3721 gccgccggtt gccggcgcga tgtacagtgc gggcgtgccg ttgctcgttg tcgctctgat
     3781 caggag
//
LOCUS       DATIMD010000067         6373 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4647095, whole genome shotgun sequence.
ACCESSION   DATIMD010000067 DATIMD010000000
VERSION     DATIMD010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6373
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4647095"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(168..1343)
                     /locus_tag="VLI40_01555"
     CDS             complement(168..1343)
                     /locus_tag="VLI40_01555"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HSU95884.1"
                     /translation="MRSVSIDGGKTAGTITAVTLLVLLLWMFQRTVDVFLLLFIAIIL
                     SLYLGAVRDALVSRAQVPARIAFTASVLLTIAVVVGLFWLLVPAVAGQTRELVDVLPT
                     YITSWEASFDRFVVSLPGMSGYWKTGQHQVLRALYDQLSSYAQGMFSRVFSVVGILID
                     VFSVFVMSIYLALQPGVYREWLIALFPPRHRDLVRDILRDIASSLRAYIVGQLTTMTV
                     LAILTAFFLWLLNVPYWLTFGVFTGMVAIVPFFGSLLSTTLPAAFVLTGPNGGTRALL
                     VLGVGVVVHLIEGNLVSPLVMSKQVELPPVLTIMAVLVVGSLLGPLGLVVALPTLAMV
                     MVVVRRILINRIYEGKGFRKTGRERKLVLRVPVPDGGVLLAQGGPVDLEAFKTRVAT"
     gene            complement(1340..2131)
                     /locus_tag="VLI40_01560"
     CDS             complement(1340..2131)
                     /locus_tag="VLI40_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HSU95885.1"
                     /translation="MGIFESIARLFRANVNAAISAVEQPDKMLTQIIADMRTQLVRAK
                     QQVAAAIADEKRLEDQTMGELREAEEWERRAMLAVKEGRDELAKQALMRRNEHVSRGQ
                     QMQMTWEAHKQETDRLKNSLRDLNDNIEEANRKKTLLLARQRRAEAQKRISETMSSMS
                     DKSAFDAFARMEEKIEQNERQIRASVEIDQEFSGDALSNQFKQLESSAGDATADLQLS
                     QLKQKMGLVGSGQAPQSRQLAPGEVASDPARGLPAPDASENKSET"
     gene            2878..3669
                     /locus_tag="VLI40_01565"
     CDS             2878..3669
                     /locus_tag="VLI40_01565"
                     /inference="COORDINATES: protein motif:HMM:NF017889.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007160 - cell-matrix adhesion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nidogen-like domain-containing protein"
                     /protein_id="HSU95886.1"
                     /translation="MSLPLSAQAVRTDAGFTTNNLPANDDGSTGLINLGFSANLFGTT
                     YTQAYVNNNGNITFDNPLSTFTPFGLTGGGVPPIIAPFFADVDTRNGPVMTYGTSSID
                     GHNAFGVDWPGVGYYSGHTDKTNIFQLVLIDRSDTGAGNFDFEFNYNQIQWETGDASG
                     GSGGLGGDCAVAGYSNGLSGAANNSAELTGSGVCGAFLDNGPDALKSHDLNSNVAGRY
                     VFSVRSGAVQPPTPVTSTPEPSSLALLGTGLAGIVPMVRRRRRNG"
     gene            complement(3728..4198)
                     /locus_tag="VLI40_01570"
     CDS             complement(3728..4198)
                     /locus_tag="VLI40_01570"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSU95887.1"
                     /translation="MTVQPAPVWNWAHFRDLAPGDLYDILALRTAVFIVEQNCAYQDA
                     DGADQVSHHLWTRDANGEIAASLRVVPPGVKYTEPSLGRIVTAATARGTGLGRAVVQE
                     GIARIATMYGPCAIRIGAQRYLLRFYEQLGFVSTGREYDEDEIPHTEMLRPAAR"
     gene            complement(4202..5080)
                     /gene="sdaAA"
                     /locus_tag="VLI40_01575"
     CDS             complement(4202..5080)
                     /gene="sdaAA"
                     /locus_tag="VLI40_01575"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006565 - L-serine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HSU95888.1"
                     /translation="MYKSLADAISDAEARGVTLTTVALDLESQDQGRPVADIRAALAR
                     ALNVMRGAVDAGMTGAMRSNSGLVGGDAAKLVNSTAGPLAATPFHDILIRALAVQEVN
                     AAMGVIVAAPTAGGAGVLPAVLTGIASARGISDDKLVDALATAGLIGAVIAERASLSG
                     AEGGCQAETGAAAGMAAGAATEMLGGSPRQAGHATALAMQSTLGLICDPLGGLVELPC
                     VFRNATGSAIALAAIEMALAGIEFAIPVDEVIDVMGQIGREMDVRYRETAGGGLAATP
                     TGRRLAKERLYQIKRA"
     gene            complement(5090..5761)
                     /gene="sdaAB"
                     /locus_tag="VLI40_01580"
     CDS             complement(5090..5761)
                     /gene="sdaAB"
                     /locus_tag="VLI40_01580"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006565 - L-serine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent
                     subunit beta"
                     /protein_id="HSU95889.1"
                     /translation="MVSLLDIIGPVMVGPSSSHTAGACRLGLLARGLVGGTPQTALLE
                     LHGSFARTGEGHGTDKALVAGLLGFRPDDERIRTALEIADGEGLEYTFEKTTISDESH
                     PNTVRITVSRGPRRAVMVGSSLGAGRVLVTEIDGYPVDISGNFYSIVILAADVKGSIA
                     RVTHILSNHDINIATLKLTRKQRGGDAFIVIECDDNPGEDVRDEIRELAWVRWAMRLD
                     KVSGG"
     gene            complement(5761..>6373)
                     /locus_tag="VLI40_01585"
     CDS             complement(5761..>6373)
                     /locus_tag="VLI40_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HSU95890.1"
                     /translation="GLVKIEMHFLPDVYVPCDVCKGKRYNRETLEVRFRGLSIADVLE
                     LTVEDAAEVFANQPRIHNKLVTLNEVGLGYIHLGQSATTLSGGEAQRVKLASELSKRD
                     TGRTFYILDEPTTGLHFEDVRMLLKVLHTLVDRGNTVLVIEHNLDVIKTADYIIDLGP
                     EGGLKGGTIVASGTPEQVARVAASHTGHYLGHMLPAMSRRKAG"
BASE COUNT         1209 a         2042 c         1911 g         1211 t
ORIGIN      
        1 gaaaagctgt cggcccggtt tccggcaatg aaagtcctct acatgtccgg ctataccgac
       61 gacatggtcg tgcgcacagg cgtactcgag cacgatacgc tgtttctgca aaagccgttt
      121 tcgcaggatg tcctgctgag caaggtgcga gaggcgctgg atcgctgcta ggttgcgacc
      181 cgcgtcttga aggcttcgag atccacaggt ccgccctgtg ccagcagcac tccgccgtcc
      241 ggaacgggaa cacgaagcac cagcttccgc tctcgccctg tcttgcggaa gccctttccc
      301 tcgtagatcc ggttgatgag gatccgccgc accacgacca tcaccatcgc cagagtcggc
      361 agtgcaacga cgagtccgag cgggccgagc aggcttccga caacgagcac cgccatgatg
      421 gtgagtacgg gcggcagctc cacctgcttg gacatcacga gcggcgagac gaggttgccc
      481 tcgatgagat gcacgaccac gccgacgccg agcacgagca gcgcgcgtgt tccgccattg
      541 ggaccggtga gtacgaacgc cgccggtaac gtcgtgctga ggagcgagcc gaagaacgga
      601 actatcgcaa ccattccggt gaacacgccg aatgtgagcc agtagggcac attcagcagc
      661 cacaggaaga acgccgtcag gatggcgagc acggtcatcg tcgtcagctg cccgacgatg
      721 taggcacgca gagagctcgc aatatcgcga agaatgtcgc gcacgaggtc gcggtgccgc
      781 ggcggaaaca gcgcgatgag ccactcgcga tacacgcccg gctgcagcgc gagatagatg
      841 ctcatcacga acactgagaa cacgtcgatc agaattccaa caaccgagaa cacgcgcgag
      901 aacattccct gcgcgtagct ggacagctgg tcgtacagcg cacgcaacac ctgatgctgg
      961 ccggtcttcc agtagccgct catgccggga agactcacca cgaaccgatc gaacgatgct
     1021 tcccagctcg tgatgtacgt agggaggacg tccacgagct cgcgggtctg tcccgcaacg
     1081 gccgggacga gtagccagaa caggcccacg acgacggcaa tcgtgagtag cacgctcgcc
     1141 gtgaatgcaa tgcgagcggg cacctgtgcg cgtgatacga gcgcatcgcg caccgcgccg
     1201 agatacagcg agaggatgat ggcgatgaac agcagcagaa acacatccac cgttcgctga
     1261 aacatccaga gaaggaggac gaggagtgtg accgccgtta tcgttccggc tgtcttgcct
     1321 ccatcgatgg agacggacct caagtttccg acttgttctc gctggcgtcc ggcgcgggaa
     1381 gtccgcgcgc gggatctgag gcaacttcac cgggcgctag ctgtcgcgac tgcggcgcct
     1441 ggcccgaacc gacaaggccc atcttctgct tgagctgcga cagctgcaga tcggctgtag
     1501 catcacccgc ggaagactcg agctgcttga actgattgct cagcgcatcg cccgagaatt
     1561 cctgatcgat ctcgacactc gcgcggatct ggcgctcgtt ctgctcgatc ttctcttcca
     1621 tgcgcgcaaa cgcgtcgaag gcggacttgt cggacatcga ggacatcgtt tcggaaatcc
     1681 gcttctgcgc ctcggcgcgt cgctggcgcg cgagcagcag cgtcttcttg cgattcgctt
     1741 cctctatgtt gtcgttcagg tctcgcagcg aattcttgag gcggtcggtt tcctgcttgt
     1801 gcgcctccca cgtcatctgc atctgctggc cgcgcgagac gtgctcgttc cggcgcatga
     1861 gtgcctgctt ggcgagctcg tcgcgccctt cctttacggc gagcatcgcg cgccgctccc
     1921 actcctcggc ctcgcgcagc tcgcccatcg tctgatcttc gaggcgcttc tcatcggcga
     1981 tcgcggcggc aacctgctgc ttggcccgca caagctgcgt ccgcatgtca gcgatgatct
     2041 gcgtcaacat cttgtccggc tgctcgacgg ccgagatcgc ggcgttcacg tttgcgcgaa
     2101 agagacgcgc tatgctttca aagatgccca tgcggacaga gttggtcgga gttcgtggag
     2161 cgggtggtcg tcacgtacca ggccaggtga ggctgagccg gtgctgtcta tgctgtctat
     2221 atactagcgc cggccaccac ataaaagaat aaacaaatac caacgaactg gccctggcgg
     2281 tccctcaacc gggatcggcc gcgccggttc cggtcccgtc gcgcgggcgc cgagctgacc
     2341 cggacgccct gcgggaacca gccttggagc accggccgtg gagcactcgc cctcgggcgg
     2401 cggactcata acgaaccggc gtgaagtcct cctgaccggc gctggtgtgg cccgtagcgg
     2461 cgccgagcgc tggaaactca tcggcaacgt gttggcgccg cccacacaac aggcgcgatt
     2521 ccgtcgcgac gacccaacaa ctgggttgac tcaaaagcat gccaacgggc gtcgcaggtg
     2581 cccatgaact tctggctaag ccgttggatg acaacatgtt gacgagaatt gacatctcga
     2641 tgactccatg gtggcacgag gccctggaat tgctcggcga gagtgcgcga taaatactgc
     2701 gcacttcaac tccggagccg gctcttggcc catcgactac ttcgcagttc gactgcgaaa
     2761 tcatgtgtgt tggcatcggt tatgatgtca cgcgtttcca aactttcact gaggaggtcg
     2821 accgttatgt tgcgctcgaa gctggccctt gccgccagcg cattggcgtt gtgtgctgtg
     2881 tccttaccat tgtcggcgca ggctgtccgg accgacgcag gcttcactac gaacaatctt
     2941 ccggcgaacg acgacggatc taccggtctg ataaacctcg gattctcggc gaacctgttc
     3001 ggcaccacgt acacgcaggc gtacgttaac aacaacggaa acatcacttt cgacaatccg
     3061 ctctcgacat tcacgccgtt cggtctcacc ggcggcggcg tcccgccgat catcgctccg
     3121 ttcttcgcgg atgtcgacac gcgaaacggg ccggtgatga cgtacggaac gagctcgatc
     3181 gacggtcaca atgcattcgg agtcgactgg ccgggagttg gctactacag tggacacacc
     3241 gacaaaacga acatttttca gctggttctg atagatcgta gcgacaccgg cgccggcaac
     3301 ttcgacttcg aattcaacta caatcagatc cagtgggaga caggcgatgc aagcggcggt
     3361 tcgggagggt tgggcggcga ctgcgcggtc gccggatact ccaatggcct ttccggcgcc
     3421 gcgaacaatt ccgcggagct cactgggtca ggtgtttgtg gtgctttcct cgataacggc
     3481 cctgacgctc tcaagtcgca cgacctcaac agcaacgtgg ccggccgcta cgtgttctcg
     3541 gtcaggagtg gcgcggtcca gccgccgaca cctgtgacct ccactccgga gccgtcctct
     3601 ctggcgctcc tgggtactgg tctggctggt atcgtcccga tggttcgccg gcgtcgccgg
     3661 aacggctgac gaagcgcaat ctcaaagcac tttagcacgg gcccatgcaa ttgcgtgggc
     3721 cctgctgtta tctcgctgcc ggccgtagca tctcggtgtg cggaatctcg tcttcgtcgt
     3781 actcacgacc ggtggatacg aagccaagct gctcgtaaaa gcgaagcaga taccgctgtg
     3841 cacctattcg aatcgcgcag ggtccgtaca tcgttgcgat ccgcgcgatt ccttcctgaa
     3901 ctaccgcgcg accgagccca gttccccgcg ccgttgcggc tgtgacgata cgccccagtg
     3961 aaggctccgt gtatttgacg ccgggcggta ccacgcggag actggctgca atctctccgt
     4021 tcgcatcgcg cgtccacagg tgatgcgaca cctggtccgc gccatcggca tcctgatacg
     4081 cgcaattctg ctcgacgatg aagaccgcgg tgcgaagtgc gaggatgtca tacagatcgc
     4141 ctggcgcgag gtcacggaaa tgcgcccaat tccagaccgg cgccggttgc actgtcacga
     4201 tctacgcccg cttgatctgg tacagcctct cttttgcgag gcgacgcccg gtcggcgttg
     4261 cggcaaggcc gccacctgca gtctcgcgat aacgcacgtc catctcgcgc cctatctgac
     4321 ccattacgtc gattacctcg tccaccggaa tcgcaaactc gattcctgca agcgccatct
     4381 ctatggctgc aagcgcgatc gcagagccgg tcgcgttgcg aaacacgcac gggagctcga
     4441 ccaacccgcc cagcggatcg cagatgaggc ccagcgtgct ctgcatcgcg agcgctgtcg
     4501 catggccagc ctggcgcggc gacccgccga gcatctcggt cgctgcgcca gcggccatcc
     4561 cagccgccgc accggtctcc gcctgacatc caccttcagc gcccgacagc gacgcgcgct
     4621 cggcgatcac ggctccaatg agccctgcag tggccaacgc atcgacaagc ttgtcatccg
     4681 aaatcccgcg cgcactggca atgccggtga gcaccgccgg aagcacgcct gcaccgccgg
     4741 ccgtcggtgc cgccacgatt acgcccatcg ccgcgttcac ttcctggact gccagcgcac
     4801 gtatgaggat gtcatgaaac ggtgtcgcgg ccagcggtcc cgctgtactg ttgaccagct
     4861 tcgcagcatc gccgccaacg agccctgaat tggagcgcat cgcgccggtc attccggcat
     4921 cgactgcgcc gcgcatcaca ttgagtgcac gagcgagcgc agcacggatg tcggcgaccg
     4981 gacgtccctg atcctgcgat tccaggtcga gggctacggt tgtgagcgtt acgccgcggg
     5041 cttcggcgtc gcttatcgca tcagcgagtg atttgtacat tcgactggct cagccgccgg
     5101 agactttgtc cagccgcatt gcccagcgaa cccacgcgag ctcgcggatc tcgtcgcgca
     5161 cgtcttcacc gggattgtcg tcgcactcga tgacgatgaa cgcgtcaccg ccgcgctgtt
     5221 tgcgcgtgag cttgagcgtc gcgatgttga tgtcgtggtt ggacaggatg tgtgtgacgc
     5281 gcgcgatgga tcccttcacg tctgcggcaa ggatcacgat gctgtaaaag ttgccgctga
     5341 tatcgaccgg ataaccgtcg atctcggtga cgagcacgcg acctgcgccg agcgacgatc
     5401 cgaccatcac cgcgcgtcgt ggaccgcgcg atactgtgat gcgaaccgta ttgggatgtg
     5461 actcgtcgct gatcgtcgtc ttctcgaagg tgtattcgag cccttctccg tcggcgatct
     5521 cgagtgcggt tctgatccgc tcgtcatcgg gacgaaaacc gagcaggccc gcgacgagcg
     5581 ccttgtcggt tccgtgtccc tcacccgttc gcgcgaacga gccgtgcagc tcgagcagcg
     5641 ccgtttgcgg cgtgccgccc accaggccgc gcgcgagcaa tccgagccgg cacgcaccgg
     5701 ccgtgtgcga cgacgacggc ccaaccatta cgggcccgat gatatcgaga agagagacca
     5761 tcagcccgcc ttgcgtctgg acatcgctgg aagcatgtgg ccaagatagt gtcccgtatg
     5821 cgatgctgcc acacgcgcga cctgttccgg tgttccgctc gcgacgatcg tcccaccttt
     5881 caatccacct tcgggaccga gatcgatgat gtagtccgca gtcttgatca cgtcgagatt
     5941 gtgctcgatc acgagcacgg tgttgccacg atcgacaagt gtatgcagaa ccttgagcag
     6001 catgcgcacg tcttcgaagt ggaggccggt tgtcggctca tccagaatgt agaaggtgcg
     6061 ccccgtgtct cgcttggaca gctcggatgc aagcttgacg cgctgtgcct ctccacccga
     6121 aagcgttgtc gcgctctggc cgagatggat gtaacccaac ccgacttcgt tcagcgtgac
     6181 cagcttgttg tggatgcgcg gctggttggc aaatacctct gcggcatcct cgaccgtcag
     6241 ctcgagaacg tcagcgatgc tgagtccgcg aaagcgaacc tcgagcgttt cacggttgta
     6301 gcgcttgccc ttgcacacgt cgcacggcac gtacacgtcg ggcagaaagt gcatctcgat
     6361 cttcacgaga ccg
//
LOCUS       DATIMD010000068         3411 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2625227, whole genome shotgun sequence.
ACCESSION   DATIMD010000068 DATIMD010000000
VERSION     DATIMD010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2625227"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(117..866)
                     /locus_tag="VLI40_01590"
     CDS             complement(117..866)
                     /locus_tag="VLI40_01590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95891.1"
                     /translation="MRACILAGSIAFAALATSTVLPAQAPPDGAELVRLMHDRYVAKW
                     YTTLTFTQATQRRTAADTMVHETWYEAMKLPGRLRIDVGAPSGDPVILFARDSIYVRR
                     GGQNLPARAGRNPLLLLGFDIYTQPIERSVSVLREEGFDLSKMHEGTWQGRRVFIVGA
                     MPGDTTSKQFWIDADRLVFVRMIGPVAPGRPALEDVRFDRYQPAGNGWLATLVTDTRD
                     GKLVQSEDYSDIRVNVPVADSRLDPAMLGRP"
     gene            complement(927..1304)
                     /gene="aroH"
                     /locus_tag="VLI40_01595"
     CDS             complement(927..1304)
                     /gene="aroH"
                     /locus_tag="VLI40_01595"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR01796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004106 - chorismate mutase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HSU95892.1"
                     /translation="MSHAGHGPTRIRGVRGATRVARDDSESIRAATRELLTEMMLLNS
                     LSQDAIVSAFFTVTPDLVSEFPARAARELGWDDVAMLCSTEIPVPGSMSRVVRVLLLA
                     ELPPNTSVRHVYLNGAEELRPDL"
     gene            complement(1301..3109)
                     /locus_tag="VLI40_01600"
     CDS             complement(1301..3109)
                     /locus_tag="VLI40_01600"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSU95893.1"
                     /translation="MPTDGYSFTRGIFAGEINDQLLFPYPPQLDTLASSEAATVARLV
                     QAMENRLGGLIDSVKFDEEETIPDDVIAALAEKGFLGMTIPRRFGGLELSPRAYARVC
                     EAIGGVDSSIGVFIGVHCGLGCKAIVMYGTEAQKQRWLPSLARGEILVSYALTEPLVG
                     SDAQHVKTTATLSADRSHWTLNGHKIWIGNAHRAAVLVTFAQTEIERDGRMVTKPTAF
                     LIEPTMPGFRVVETVRKMGIRGSTQAELEYSNLRVPAQNVLGEVGRGFAVAVHVLNGG
                     RLTLAAGCTGAAKHVFREMISYVDQRIQFDKPLAEFEITQRKLATIASDIYASDAMLG
                     VVADLATDDQADWSLEAAIGKVFASELIWRTTDEMVQLAGGRGFVKPYPYERFLRDSR
                     INRIFEGANEILRLFIALNGIQTLSGQLKEVSVALREPIKHLGLLSEFAAAKVRNAFG
                     ASATLDFELDPRLAAHKEAFEKHVAELRASAESAVTKYRGEIVERQMVVERLSNMAIE
                     LFATACVLSYTQSLLERQDDARAIQLCDIFCVGAGLRFRAARAALAGGADGLLDDVRR
                     DVAAEMRIDQGYALPDAILDVAANAAANRIVPQLVT"
     gene            complement(3129..>3411)
                     /locus_tag="VLI40_01605"
     CDS             complement(3129..>3411)
                     /locus_tag="VLI40_01605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95894.1"
                     /translation="PHDPTDNATPSGTSLAVDLLLRLANYDDNESYRGIASQVMASLA
                     GLVTRYPSAFGHLLGDAEYAETFACHGDYCDMPSPRALDIARATPTINK"
BASE COUNT          640 a         1061 c         1040 g          670 t
ORIGIN      
        1 gagacgagga ctgtcagtag catcagtaag cggggcagtt atagcgaaga aacttaacca
       61 tcgccgccgg tcgcgcgcag ccggattcct gcccgtgcga cttgttgcgc cgtccgtcag
      121 ggacgcccga gcattgccgg atcgagccgg ctgtccgcca ctggcacgtt gacacgaatg
      181 tcggaatagt cctcgctctg aacgagcttg ccgtcgcgtg tatcagttac gagagttgcg
      241 agccatccgt tgcccgcagg ctggtaccga tcgaatctga cgtcttcgag agcggggcgt
      301 ccgggtgcca ctgggccgat cattctgacg aagaccagcc ggtcggcatc gatccagaac
      361 tgcttggacg tcgtatctcc cggcattgcg ccgacgatga acacgcgccg gccctgccag
      421 gtgccttcgt gcatcttgct gagatcaaag ccctcctcgc gcaacacact cacgctgcgc
      481 tcgataggtt gcgtgtagat gtcgaacccg agcaacagca acggattgcg acccgctctt
      541 gccggaaggt tctgaccgcc acgccggacg tagatgctgt cgcgtgcaaa taaaatcacc
      601 ggatcaccac tcggcgcgcc gacatcgatg cgcagtctgc cgggcagctt cattgcctcg
      661 taccaggtct cgtgcaccat ggtgtctgcg gcggtgcgtc gctgcgtcgc ctgcgtgaat
      721 gtgagcgtcg tataccactt cgcgacatat ctgtcgtgca tcaaccgcac gagctcggcg
      781 ccatccggcg gcgcctgggc gggaagtaca gtggaggtcg cgagggctgc gaacgcgatg
      841 gatccggcga gtatgcaagc gcgcattgga ttcctcgatt gttgtcgtac gtccaaccag
      901 tcaagactcg ttcacctgcg tcgccgtcac agatcggggc gcaattcttc cgctccgttg
      961 aggtacacgt gccggacaga tgtgttcggg ggcagctccg caagaagcag gacccgcacc
     1021 acgcggctca tcgagccggg cacggggatc tctgtcgagc agagcatcgc cacgtcatcc
     1081 caccccagct cgcgagccgc tctggcagga aattcgctca cgagatccgg cgtgacagtg
     1141 aaaaacgcgc tgacgatcgc atcctggctc agagaattga gcagcatcat ctctgtgagc
     1201 aattcacgcg tcgccgcgcg aatggattcc gagtcgtcgc gcgcgacgcg ggtggccccg
     1261 cggacgccac ggatgcgcgt cggaccgtgt ccggcgtggc tcatgtcacc aattgcggaa
     1321 cgatccgatt cgccgccgca ttcgccgcca catcgagaat tgcgtccggc agtgcatatc
     1381 cctgatctat tcgcatctcc gccgccacat cgcgccgaac gtcgtcgagc agtccgtcgg
     1441 cgccgccagc gagtgcggca cgcgcggcgc ggaacctcag gccggcaccg acacagaaga
     1501 tgtcgcacaa ctgaattgcg cgggcgtcgt cctggcgttc gagcagtgac tgcgtgtacg
     1561 acaacacaca tgccgtagcg aacagctcga tcgccatatt cgacagtcgc tcgacgacca
     1621 tctggcgctc cactatctct ccccgatact tcgtcactgc actctctgca gatgcgcgca
     1681 gctccgcgac gtgtttctcg aatgcctcct tgtgcgccgc gagtctgggg tccagttcga
     1741 agtcgagcgt tgcgctggcg ccgaacgcgt tacggacttt cgcggcagca aactcgctca
     1801 gcagtcccag atgcttgatc ggctcgcgca gcgcgacgct gacctccttg agctgaccgg
     1861 agagagtctg aatgccgttg agcgcgatga acaatcggag tatctcattg gcgccttcga
     1921 atatcctgtt gatccggctg tcgcgaagga accgctcgta cggatacggt ttcacgaacc
     1981 cgcgacctcc agcgagctgc accatttcat ccgtcgtgcg ccagatcagc tcacttgcga
     2041 acaccttgcc gatcgcggcc tcgagcgacc agtccgcctg gtcgtccgta gcgagatctg
     2101 caacgacgcc aagcattgcg tctgaagcgt agatgtccga tgcgatagtc gcgagcttgc
     2161 gttgcgtgat ctcaaactcc gcgagcggct tgtcgaactg gatgcgctgg tcgacgtagc
     2221 tgatcatttc gcgaaagacg tgcttggctg cgccagtgca cccggcggcg agcgtcagcc
     2281 gcccgccgtt gagcacgtgc acggcgacgg caaagcctcg accgacctcg ccgagcacgt
     2341 tctgagcggg gacgcgcagg ttcgagtact cgagctcggc ctgcgtggaa ccgcgaatgc
     2401 ccatctttcg cactgtttcc acgacgcgaa agcccggcat ggtgggctcg atgagaaaag
     2461 ccgttggttt tgtcaccatc cgaccgtcgc gctcgatttc agtctgcgcg aaggtgacga
     2521 gaacggcggc gcgatgcgcg ttaccgatcc agatcttgtg tccgttgagt gtccagtgcg
     2581 accggtccgc gctcaatgtt gccgtcgtct tcacgtgttg cgcgtccgag cccacaagcg
     2641 gctcggtcag cgcgtatgac accagtatct ctccgcgcgc cagggaaggt agccaccgct
     2701 gtttctgggc ttccgttcca tacatcacta tggccttgca gccgagtccg cagtgcactc
     2761 cgatgaaaac gccgatcgat gagtcgacgc cgccgatcgc ctcgcagact ctggcgtacg
     2821 cgcgtggcga gagctccaat ccgccgaagc gtcgtggaat cgtcattccg agaaatccct
     2881 tttcggcgag agctgcaatc acatcgtcgg ggatcgtctc ttcttcgtcg aacttcacgg
     2941 agtcgatgag gccaccgagg cgattttcca tcgcctgaac caaccgggcg actgttgcag
     3001 cctctgacga agcgagcgtg tcgagctgcg gaggataggg gaacagtagc tggtcgttta
     3061 tctcgccggc aaagatccca cgcgtaaacg aatatccgtc agtcggcatc gatggattgt
     3121 ctggtggatt atttattgat ggtcggtgtt gcacgcgcga tatccagtgc acgtggagac
     3181 ggcatgtcgc agtagtcgcc gtgacatgcg aacgtctcgg cgtactcggc gtcgcccagt
     3241 aaatgaccga acgcagacgg atagcgggta accaatccgg cgagcgaagc cattacctgg
     3301 gatgcgatcc cgcggtagga ttcgttgtcg tcgtaattcg cgagtcgaag cagcaggtcg
     3361 accgcgagtg aggttccgga cggcgtcgcg ttatcggtgg gatcgtgcgg c
//
LOCUS       DATIMD010000069         2085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2047321, whole genome shotgun sequence.
ACCESSION   DATIMD010000069 DATIMD010000000
VERSION     DATIMD010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2047321"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..308)
                     /locus_tag="VLI40_01610"
     CDS             complement(<1..308)
                     /locus_tag="VLI40_01610"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HSU95895.1"
                     /translation="MVACGGGSGASNGSSTDGATLRAVRARGTLKCGITQGAGFATPS
                     DSGQWRGFDVDFCRAIAVALFNDPNKVEFIPYTQQQRFSGLQSGEVDVLVNGTSLTIS
                     R"
     gene            complement(445..1671)
                     /gene="metC"
                     /locus_tag="VLI40_01615"
     CDS             complement(445..1671)
                     /gene="metC"
                     /locus_tag="VLI40_01615"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR01324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004121 - cystathionine beta-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HSU95896.1"
                     /translation="MKPSKKRDRQFRPDTILIHSGGDPENRNGAVSEPVYRASTIVFP
                     TVAQYEASRDPATRFDVVRYGQLGTPTTFALEEAVAAIEDGYRTALVPSGLAAVTVAL
                     QALLKSGDHLLMVDTAYAPTRHFCDTILARFGVTTTYYDPLIGRNIGSLFRPTTRVVF
                     VESPGSITFEVQDVPAIAHAAHRAGITVVMDNSWASPYFFPAIGHGVDVSIQAASKYI
                     NGHSDVMMGTITTTQPLYDRVRSTVAELGLCVSPDDAYLTLRGMRTLGIRMERHQRNA
                     LRVATWLNEREEVARVMYPALPCDPGHAIWKRDFTGASGLFGVVLKPVPKSSVDTLLN
                     SLALFGMGVSFGGFESLAIPMDPAPLRTATQWDGEGPCLRLHIGLEDPDDLIADLAGA
                     FEKMHESANTTVVAAK"
     gene            complement(1705..>2085)
                     /locus_tag="VLI40_01620"
     CDS             complement(1705..>2085)
                     /locus_tag="VLI40_01620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95897.1"
                     /translation="SCRRFARSGSGTEATVMTEIGLPLADAVLAHRRGSYGDVVDTLM
                     PLRRTFRRIGASHAQRDVFDQLLIDSAWRGRRLDAAAELLAERTARRPRNIWAWKHYA
                     DVLEASGATSAAAARATLDRLRAE"
BASE COUNT          389 a          680 c          617 g          399 t
ORIGIN      
        1 cggcttatgg tcagcgatgt gccattgacc aggacatcga cctcaccgga ttgcaggccg
       61 gagaaacgtt gctgctgcgt gtacgggatg aactcgacct tgttcgggtc gttgaacagc
      121 gcgaccgcga tggctctgca aaagtccaca tcgaagccgc gccactgccc ggaatcactc
      181 ggtgtggcga atcccgcgcc ctgcgtaatg ccacacttga gcgttccgcg tgcgcgcacc
      241 gccctgagcg tcgcaccgtc ggtcgatgac ccattgctcg cgcccgagcc accgccgcaa
      301 gcgaccactg cgacgataca cgagacgata cacgagttga tacacgagtt gatacacgag
      361 ttgatacagc tcgccagtac cgcgcgaccg tgggaccacg tcattcccaa tcttctctcg
      421 tacaattgat cacccaggcc tcggtcactt tgcggcgact acggttgtgt tggcgctctc
      481 atgcattttc tcgaacgctc ccgcaagatc ggcgatgaga tcgtcgggat cttccagtcc
      541 gatgtgcaat ctcaaacagg gcccctcgcc gtcccactgc gtcgcggtgc ggagtggcgc
      601 ggggtccatc ggaatcgcca ggctctcgaa gccgccaaag ctcactccca tcccgaatag
      661 cgcgaggctg ttcaatagtg tgtccaccga tgacttgggt accggcttca acacgacgcc
      721 gaacagtcca cttgcaccgg tgaaatcgcg cttccagatc gcgtggcctg gatcgcacgg
      781 tagcgccgga tacatcacgc gtgcgacttc ctcgcgctca ttgagccatg tcgccacgcg
      841 cagcgcgttc cgctgatgcc gctccatgcg aatccccagc gtacgcattc cgcgcaatgt
      901 cagatacgcg tcgtcggggc tcacgcacag gcccagttct gcgaccgtgg accgcacgcg
      961 atcgtacaac ggctgcgtgg tggtgatcgt acccatcatc acgtcggaat gcccgttgat
     1021 gtatttcgac gccgcctgga tcgagacgtc gacgccatga ccgatcgccg gaaagaaata
     1081 cggactggcc cagctgttat ccatgacgac ggtgattccc gcgcgatggg ctgcatgcgc
     1141 gatcgccggc acgtcctgca cctcgaaagt gatcgagccc ggtgattcga cgaacacgac
     1201 acgtgtcgtt ggccggaaca gcgagccgat gttccggccg atcagaggat cgtagtaggt
     1261 tgtcgtgacg ccgaatcgag caagaatggt gtcgcagaaa tgcctggttg gagcgtatgc
     1321 ggtgtccacc atcagcaagt gatcgccgct cttcaatagc gcctgaagcg cgaccgtgac
     1381 cgcagcgagt ccggatggca cgagcgccgt acggtagccg tcttctatcg ccgcaaccgc
     1441 ttcttcgagc gcgaacgtgg ttggtgttcc aagctgtccg tatcgcacca cgtcgaaccg
     1501 ggtcgccgga tcacgcgacg cctcgtactg cgccaccgtc ggaaaaacga tcgtcgacgc
     1561 gcgatacacc ggctcgctga ccgccccatt gcgattctcg ggatcaccgc cggaatggat
     1621 cagtatcgta tcaggccgga attgcctgtc gcgttttttc gagggtttca tgtttcgaat
     1681 tcagatcttg tttggacgcc gcggctactc tgcgcgcagc ctgtcgagcg tggcccttgc
     1741 cgccgcggca ctcgtcgcgc cggacgcttc cagcacgtca gcgtagtgct tccacgccca
     1801 gatgttacgc ggtcgacgcg cagttcgctc ggcgagcagc tcggccgcgg catccaggcg
     1861 acgtccgcgc cacgccgaat cgatgagcag ctggtcgaac acatcgcgtt gtgcgtggct
     1921 cgcgccgatc cggcgaaacg tgcgccgcag tggcatgagc gtgtccacca catcgccgta
     1981 cgaaccacgc cggtgggcaa gcacggcgtc agcgagtggc agccctatct cggtcatcac
     2041 cgtcgcttcg gtgcctgatc cgcttcgcgc gaaccgccga cagga
//
LOCUS       DATIMD010000070         4061 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3203365, whole genome shotgun sequence.
ACCESSION   DATIMD010000070 DATIMD010000000
VERSION     DATIMD010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4061
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3203365"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..1494)
                     /locus_tag="VLI40_01625"
     CDS             complement(73..1494)
                     /locus_tag="VLI40_01625"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSU95898.1"
                     /translation="MVPVNRLRHIFIPAAIVLLASDGAALQAQAPSQASSSATAALNI
                     PVEFYKLDNGLRVVLSPDSTTPTAVVAVYYNIGFRTEPRDRTGFAHLFEHLMFQGSRN
                     LGKLQFVKLVEQNGGILNGSTRFDFTNYFEVVPTHAVRRILWAEADRMRGLVIDTANL
                     NNQRDVVKNEVRVNVLNQPYGGFPWIDLPMHANTNWYNAHNFYGDMHDLDAANLSDVQ
                     SFFHTYYSPGNAVLVVTGDYNRDDVRDWITEYFGNIPSAALPPRPDLSEPPQTAEKRF
                     TRIDSLATRPAIGVAYHVPPRLTPEWYAFGLLDQILAQGQNSRFYQELVQKRGLTGSV
                     DAGINFGLGDMFDYQGPMLWEIQAFHDSGKSGETLLAAMDTAIAPLRTTPVSQAVLNL
                     ALVKLRSSLYQELEQSAGFGRANLLASFALFDNDPAEINRLEAGFASVTPDLLLRTAQ
                     EYLAPTNRTVEFIVPAARSGSNP"
     gene            complement(1594..2229)
                     /locus_tag="VLI40_01630"
     CDS             complement(1594..2229)
                     /locus_tag="VLI40_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSU95899.1"
                     /translation="MTQRIRIVIADDHPIVRSGLSGSLGSQPDFEVVGEAATGLEALD
                     LANTLDPDIVLMDIRMPELDGASATRRIIAENPRVRILVLTTYATDADVLRAVEAGAV
                     GYLLKDVPHDELFRAVRAVARGERYLAHSVAARLMQQMATPAHEPLTNRETEVLQCVA
                     RGASNKQIASTLGIAEPTVKAHLVHIFGKLGVDSRTSAVRAGVERGFIELG"
     gene            complement(2226..3590)
                     /locus_tag="VLI40_01635"
     CDS             complement(2226..3590)
                     /locus_tag="VLI40_01635"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSU95900.1"
                     /translation="MAQTGASHDIYRMVLTARLRAPAEPLFSRHAPVWLHVWAATQLV
                     ALITATRIAVLRHGSLQAVFGGEAGARLLSVLGVTIVVHIAGVILYRWLVRESWRCIV
                     YVAVCWALVFVASWQQREYSLLALGALFQACIFLPFQWITGALTAFVIADVVAVSRTD
                     NGFVVTRFINAIPILVLGVIVGAIVLYIHRSNRDAAVQEDLLRKLDAAQQDLAARSRE
                     AGVLAERQRLSRDLHDTLAQGFTSVIAQLSAAELVLRGSANDPDASASAIETIGNPHI
                     DQAALAAPYLAQAQAVSRASLTEIRRLVLALRPSALAHGSLSAALDRVVNEWAALHGV
                     RASFESSSVPELVQDAEVTFLRATQEGLSNVARHASARNVSVRLSHVDDLVLLEIDDD
                     GVGISEQTLHADHGLGIAGMRERAAALGGRVIVESNGGNGTSLTVALPLATAVAPSQR
                     QELA"
     gene            3743..>4061
                     /locus_tag="VLI40_01640"
     CDS             3743..>4061
                     /locus_tag="VLI40_01640"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU95901.1"
                     /translation="MQRAIRESLFQGLGALGINPMRTGLATLGIVIGVASVIMTLALG
                     DGLGNYARESLAVTTDVQTVNIASRTSEIRDGFSFPVSGYPVFTLQDAAELQHVVGCD
                     GDVT"
BASE COUNT          781 a         1219 c         1298 g          763 t
ORIGIN      
        1 agtgtggttg ccgcgccaag cacgatggca gcggccgata tgatgttctt catctgtctg
       61 atctccgcgc tatcatgggt ttgagccgct tctggcggca ggcactatga actcgaccgt
      121 gcgattggtc ggagcgagat attcctgcgc tgttctgagc agcagatccg gcgttacgct
      181 cgcgaagccg gcctcgagcc tgttgatctc ggcaggatcg ttatcgaaca gagcaaagga
      241 tgcgagcaga ttggcccgcc cgaatcccgc ggactgctct agctcctgat acagactcga
      301 tctcagcttg acgagcgcca gattcagtac cgcctgactc acgggcgtcg tgcgcagcgg
      361 tgcgatagcg gtgtccatcg ctgccagtaa tgtttcgccg gactttccgg agtcgtgaaa
      421 tgcctgtatc tcccagagca tcggaccctg gtaatcgaac atgtcgccca gtccgaagtt
      481 gatgccggca tcgacgcttc cagtcaggcc gcgcttctgc acgagctcct ggtagaagcg
      541 tgagttctgg ccctgcgcca gaatctggtc cagcaatccg aacgcgtacc attcaggcgt
      601 gagccgcggc ggaacgtggt acgcgactcc gattgcaggg cgcgtggcga gcgagtcgat
      661 tcgcgtgaag cgcttctccg cagtctgcgg cggctcggag agatcgggcc ttggtggaag
      721 cgcggcagat gggatgttgc cgaaatattc ggtgatccag tcacgcacat cgtcacggtt
      781 gtagtcgccg gtgactacga gcaccgcgtt gccgggcgaa taatatgtat gaaagaagct
      841 ctgcacgtcg ctcagattcg cagcgtcgag atcgtgcatg tcgccgtaga aattgtgcgc
      901 gttgtaccag ttggtattcg cgtgcatcgg cagatcgatc cacgggaagc cgccgtacgg
      961 ctgattcaac acattgacgc gaacctcgtt cttgacgacg tcgcgctggt tgttgaggtt
     1021 ggcggtatcg atcacgagtc cacgcatgcg atcggcctcg gcccacagga tccggcgcac
     1081 cgcgtgagtg ggcacgacct cgaagtaatt ggtgaagtcg aaccgcgtgg atccattcag
     1141 gataccgccg ttctgctcca ccagcttcac aaattgaagc ttgccgagat tgcgcgatcc
     1201 ctggaacatg agatgctcga agagatgcgc gaagccggtg cggtcgcgcg gctcggtgcg
     1261 gaatccgatg ttgtaataca cggcgactac tgcggttggc gtggtcgagt ccggggacaa
     1321 caccacacgc agtccgttgt cgagcttgta gaactcgacg ggaatgttca gtgcggcggt
     1381 tgcgcttgaa gaagcttgag aaggagcctg agcctggagc gccgcgccgt ccgacgcgag
     1441 tagcacgatg gctgccggga tgaagatatg acgcaggcga tttacgggca ccatggtcgt
     1501 cttttgggag tgagtggtga gggaacatgg aggacgccac ggcgtccggc aagtcgccgg
     1561 atttgcaggc gcagcacgcg gttccggagt gggtcagccg agctcgatga atccccgctc
     1621 gactccggcc cgcacggcgg acgtccggct gtcgacgccg agcttgccga atatgtgaac
     1681 cagatgcgcc tttaccgtcg gctcggcgat gccgagtgtg ctggcgatct gcttgttgct
     1741 ggcgccgcgt gcaacgcatt gaagtacctc cgtttcacga ttggtcagcg gctcgtgtgc
     1801 cggggttgcc atctgttgca tcagtcgcgc ggcgacggag tgtgccaggt agcgctcacc
     1861 gcgtgcaacc gcacgcactg cacgaaacag ctcgtcgtgc gggacgtcct tgagcagata
     1921 tccgacagcg cccgcctcga ccgcgcggag cacgtccgcg tcagttgcgt acgttgtaag
     1981 cacgagtatc cgcacgcgtg gattctcggc gatgatacgg cgcgtcgcac tggcaccatc
     2041 cagctccggc atgcggatgt ccatgaggac gatgtccgga tcgagcgtgt tggcgagatc
     2101 cagcgcctcg agtccggtgg cggcctctcc aacgacctcg aaatccggct ggctgcccag
     2161 gctgcccgac agaccgctgc ggactatcgg atggtcatcc gcaattacga tccgaatgcg
     2221 ttgcgtcacg cgagctcctg tcgttgcgat ggtgcgaccg cggtagcaag cggcagagcc
     2281 acagtgaggc tcgtaccgtt gcctccgttg ctttcgacga tcacacgtcc tccgagtgca
     2341 gcggcgcgct cgcgcatgcc cgcgataccg aggccgtgat ccgcgtgcag agtctgctcg
     2401 gagataccga cgccgtcgtc gtctatctca agaagcacca gatcgtccac gtgtgacagt
     2461 cggacggaga cattccgcgc ggatgcgtgg cgcgcaacgt tgctcaatcc ttcctgtgtg
     2521 gcgcgaagga aagttacttc cgcatcctgc accagctcag gcacgctgct ggactcgaac
     2581 gatgcgcgca cgccgtgcag agctgcccac tcattcacta cacgatccag cgccgcggag
     2641 agggatccat gtgcgagcgc cgaggggcgc aatgccagta cgagccggcg aatctcggtg
     2701 aggctggctc gcgacaccgc ctgcgcctga gcgagatacg gtgcggcaag cgcagcctgg
     2761 tcgatgtgcg gattgccgat ggtttcgatc gccgaggccg aagcatcagg atcattggcg
     2821 gacccgcgca gaaccagctc cgcagcggat agctgcgcga tcacactggt gaatccctgc
     2881 gccagcgtgt catgcagatc gcgcgacagg cgctgtcgct cagcgagcac tccagcctcc
     2941 cgcgagcgcg cagcgagatc ctgctgcgcg gcgtcgagct tgcgcaggag atcttcctgg
     3001 accgcagcgt cacgattgga tcggtggatg tacagcacta tagctccgac tatgacgccg
     3061 agcacgagga tgggaatcgc gttgatgaac cgtgtgacga caaagccgtt gtcggtccgg
     3121 ctcacagcca cgacgtcggc gatcacgaat gctgtcaacg cgcccgttat ccactggaac
     3181 ggcagaaaga tgcatgcctg aaacagggcg cccagtgcga gcaggctgta ctcgcgttgt
     3241 tgccacgatg ctacgaatac gagcgcccag cagaccgcga cataaacaat gcaccgccac
     3301 gactcccgta cgagccaccg atacaggatc acgccagcta tgtgcactac gatcgtgact
     3361 cccagtactg acagcaggcg ggcgccggcc tcgcctccaa acacggcttg cagcgagccg
     3421 tggcggagca ccgcgatgcg cgttgcggtt atgagcgcga ccagctgagt cgctgcccag
     3481 acgtgcagcc acacgggcgc atgtctcgag aagagcggct cggctggagc gcggaggcgg
     3541 gcagtcagca ccatcctgta aatgtcatgc gatgcgccgg tttgtgccat gtggagagtt
     3601 gcattcgggg gcgagagcgc ctggatcagt catcgtatca accaaaagtt gtagagtcca
     3661 tgactccgtc cggacgatgg cgccgctcca cgcacggacg cagcttccat cagaaccaca
     3721 catcaaccga atactgactc acatgcagcg cgcaattcgc gagtcgctct tccagggcct
     3781 cggtgcactc ggcatcaacc cgatgcggac gggattggcg acgctcggaa tcgtcatcgg
     3841 cgtcgcgtcc gtgatcatga cgcttgccct gggtgacggc ctggggaatt acgcacggga
     3901 atcgctcgcg gtaacgaccg acgtgcagac ggtgaacatc gcttcgcgca cgagcgagat
     3961 tcgcgacgga ttcagctttc ccgtatccgg ctatcccgtc ttcacgctgc aggatgcagc
     4021 ggagctgcaa catgtcgtcg ggtgcgacgg cgacgtgacg a
//
LOCUS       DATIMD010000071         7281 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_892954, whole genome shotgun sequence.
ACCESSION   DATIMD010000071 DATIMD010000000
VERSION     DATIMD010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7281
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_892954"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2747)
                     /locus_tag="VLI40_01645"
     CDS             complement(<1..2747)
                     /locus_tag="VLI40_01645"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95902.1"
                     /translation="MKKKRSTSDQTSTDLAGAGAQPPDQNVLSRRGFFVRATQVGAAL
                     SVASPGISHFLQTAGAQGSLTHRPLLATDPAPRNYADLYSGLHWRMLGPFRGGRTDAV
                     SGVPGRPNEFYFGSVNGGVWKTIDAGRVWLPVFDSQPVASIGAIAVSASSPDVVYVGS
                     GECTLRDSTGYGNGMYKSTDAGKTWTHIGLENTQHIGKIAVHPHNPDIVYVAAIGHFY
                     AGNPDRGIFRSKDGGKSWEKVLYKNEDVGAIEVVIDRTNPDVVYAGLWNTRRPPWFVY
                     APSNGPGGGIYKSTDGGNTWKQLTTGLPNEGMGKSGIAVCPSNPQRVYAVIDNLNPDP
                     SAPKPPPGPPNPFASPAGLGGFFRSDDGGETWSRLSSDQALWGRGWYFEHIDVDPRNA
                     DIVYVANVSISRSMDGGKSWVALRGSPGGDDYHQVWVSPDDSNTMISASDQGTIITRN
                     AKTEDPRDVTWSSWYNQPVAQIYHVSVDYRFPYWVTGAQQDSGAVGVRSRGKFAEISM
                     RDWEPVAAGGESGYTAGDVLHPGIIFGGTGERYNMEENRVISGTTAPKSAEAGRKDWT
                     QPLVFSRADPRALYYGSQFMFKTTDNAVTWTQISPDLTRKDPGVPRTLDAAAAADVGN
                     DKRGVIYTIAPSPLFVPMIWIGTDDGLIQLTMNDGKSWTDVTPKAMTSWSRVTMIEAS
                     HFDFNVAYATVDRHQLQDFAPYIYRSRDAGKTWQKITTGLPANGYVHSVKEDPKRQGL
                     LFAGTELGVHISFDDGESWQPFQLNLPVTSMRDFEIYENDLIVATHGRGFWVIDDISP
                     LRQINDTIGNAEAYLFKPGDSINMIEGGDNGTPLQKDEPQAPNPPNGAAIDYYLKTAA
                     TGPVTIDILDSTGAVLHTFSNEPQRGAPAGGRRGNAGGIPNTSALWREPPAPFATSAG
                     M"
     gene            complement(2800..3009)
                     /locus_tag="VLI40_01650"
     CDS             complement(2800..3009)
                     /locus_tag="VLI40_01650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95903.1"
                     /translation="MLSIFKCDGSTKLIGSRWIPASAGMTDMRVPAFAGMTSPRALSP
                     AMTSQSALTGTPMLDFVPPTKVRTS"
     gene            complement(3146..5476)
                     /locus_tag="VLI40_01655"
     CDS             complement(3146..5476)
                     /locus_tag="VLI40_01655"
                     /inference="COORDINATES: protein motif:HMM:NF039587.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5916 domain-containing protein"
                     /protein_id="HSU95904.1"
                     /translation="MFLAFLGAFQLAAAQPAPVYNGRAGQITAQAPRIDTTITVDGNL
                     DEPVWSRAAVLTGFSEYSPADQRPSPDSTDVRVWYSRTAIYFGIRAFEPHGPVRATLA
                     DRDNISSDDNIEIHLDTYNERNRTLVFAVNPLGVQADGTKNETGGFIPGSNVGPGQTD
                     LSADFLWDSKGHVTPWGYEVEIRIPFSSLRYPNKSPEDWGIQIQRNVQHSGYKETWTP
                     ARSGAASFIGQEGLLVGMHDMHHGQVVGLNPELTNTVTGNPCCGPGPTGWKYSSKPQL
                     GGNVRWALGSNFVLNGTVKPDFSQVEADATQIAADERFALFYPEKRPFFVEGSDQFNV
                     PNTLVYTRTIVQPNAAMKLTGKLGRTDVAVLSALDAASTTPNGQQPLVDIIRLNSGFG
                     AQNTAGILYSDRVGGGRSNRVVDGDVHYVFGRLYYAQAQAAISNTTQNGTTQTAPMWE
                     LVLDRTGRAFGFHYNVLGIGKTFAADNGFVSRRGIVAPGISNRLSLYGPPGALLEKFN
                     VFFSTKAVWRYDDFFAGKSLLEDNASANTSFTLRGGWSLGVTPTIASYAFDPAAYIGD
                     FVSTTQGSNIPFQPSPRITTFTNAFKVSTPQFARYDASLGVTTGNDVDFLETSRVKRL
                     DYNASLDLRPTQQLRIGATYVSSRFTRRSDGARSTSTRIPRVKVEYQVTRSIFVRVVT
                     QYTATMRSSLLDPRTGLPLLILNDTSYVPSVGNVANGLRTDWLFSYRPSPGTVFFAGY
                     GNSMTEPDALAFRRLRRTQDGFFVKLSYLFQALGGR"
     gene            5538..6884
                     /locus_tag="VLI40_01660"
     CDS             5538..6884
                     /locus_tag="VLI40_01660"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSU95905.1"
                     /translation="MRTSRFRCGLAALPVAGALVLMPSSARAQTPAAALTKQERAVVR
                     AVDSHNAAALALLERTVNINSGSLNFAGVRRVGDIFRAQYDSLGFTTRWVDGAAFHRA
                     GHLVAEHPGPGPKILLIGHLDTVFEPSSPFQKFTMLNDSTATGPGVIDMKGGDVIALY
                     ALRALKDAGLLSKMNVTVVYHGDEEESGTPLSLARKTLIDAAHGATAALGFEDAAGDP
                     RTLVISRRGDDGWTLRTTGVPAHSSQIFTSEVGAGAVYEASRILDQFYQKLSSEQYLT
                     FNPGLALGGTSVKADSSGTEGSAAGKSNVVAKEMFVTGDLRTLSPEQLAHARKTMTDI
                     VADHLPNTTAEITFADGYPPMAPTDGNRKLLAMYSKVSTDLGFWPVTAVDPSRAGAAD
                     VSFVASIVPMAVDGLGLSGHDDHTEKETADLRMLPVQTKRAAVLMYRLSNPASNPK"
     gene            6939..>7281
                     /locus_tag="VLI40_01665"
     CDS             6939..>7281
                     /locus_tag="VLI40_01665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95906.1"
                     /translation="MNRKPLAASTVVAVLASVMFINAPLGAQVVPKPVTKARGDTVLR
                     QPSPTGSDTSRARQDTTAGKIPVGDSLTRFIDKFSFRNLGPAAYSGRVTAIAVPKPFR
                     KTIYIGSAGGGV"
BASE COUNT         1389 a         2219 c         2236 g         1437 t
ORIGIN      
        1 tgcattccag cggacgttgc gaacggcgcc ggcggctcgc gccacagtgc cgatgtattc
       61 gggatgccac ccgcattgcc acgccgcccg cccgcaggcg ctccacgctg cggctcgttc
      121 gagaaagtgt gcaacaccgc accggtggaa tcgaggatgt cgatcgtcac gggaccggtt
      181 gccgcggtct tgaggtagta gtcgatcgct gcaccgttcg gtggattcgg cgcctgcggc
      241 tcgtccttct gcaacggcgt gccgttgtcc ccgccctcga tcatgttgat cgaatcgccg
      301 ggcttgaaca gatatgcttc ggcatttccg atcgtgtcgt tgatctgacg cagcggactg
      361 atgtcatcga tcacccagaa gccgcggccg tgcgtcgcta cgatgagatc gttctcgtag
      421 atctcgaagt cgcgcatcga cgtgacggga agattcagct ggaacggctg ccagctctcg
      481 ccgtcatcaa acgatatgtg cacgccaagc tcggtaccgg cgaagagaag tccctggcgc
      541 tttggatctt ccttgacgct gtgcacgtag ccattggcag gcaggccggt cgtgatcttc
      601 tgccatgtct tgcccgcgtc acgcgagcga tagatgtacg gcgcaaaatc ctggagctga
      661 tgtctgtcga cggttgcgta cgcaacgttg aaatcgaagt gtgatgcttc gatcatcgtg
      721 acgcgactcc acgacgtcat tgccttgggt gtcacgtcag tccagctctt gccgtcgttc
      781 atcgtcaact ggatcaagcc gtcatcagtg ccgatccata tcatcggaac gaacagtggc
      841 gacggcgcga tagtgtagat cacgccgcgc ttgtcgttac cgacatcggc cgcggctgcc
      901 gcatcgagcg tgcgcggcac tccgggatcc ttgcgagtga gatcgggact tatctgagtc
      961 cacgtgacgg cgttgtcggt ggtcttgaac atgaactgac tgccatagta cagcgcgcgc
     1021 ggatcggcgc gtgagaacac cagcggctga gtccagtcct tgcgacctgc ctcagctgat
     1081 ttcggcgcag tggtgcccga tatcacgcga ttctcttcca tgttgtagcg ctcaccggtg
     1141 ccaccaaaga tgatgccggg atgcagcaca tcacccgcgg tgtaaccgct ctcgccaccg
     1201 gccgcgaccg gctcccagtc gcgcatcgat atctcggcga acttgccgcg cgaccgcacc
     1261 ccgaccgcac cgctgtcctg ctgcgcgcca gtgacccagt acgggaatcg ataatcaacc
     1321 gacacgtgat agatctgcgc gacaggttga ttgtaccacg agctccacgt tacatcacgt
     1381 ggatcttcgg tcttcgcatt gcgcgtgatg atcgttccct ggtcgctcgc ggagatcatc
     1441 gtgttgctat cgtccggcga gacccagacc tggtgataat catcgccgcc cggcgagccg
     1501 cgtagcgcga cccagctctt gccgccgtcc atcgagcgcg agatcgaaac gttcgcgaca
     1561 taaactatgt cagcgttcct tggatcgacg tcgatgtgct cgaagtacca gccgcgcccc
     1621 cacaacgcct gatccgacga cagtctgctc cacgtctcgc cgccgtcatc ggaacggaag
     1681 aagccaccga gtccggctgg cgacgcaaat ggattgggcg gccccggtgg tggctttggt
     1741 gcggagggat ccggattgag attgtcgatc accgcgtaaa cgcgctgcgg attggagggg
     1801 cacactgcaa ttcccgactt gcccattcct tcattcggca gccccgtcgt caactgcttc
     1861 cacgtatttc cgccgtcggt cgacttgtaa attccgccgc ccggcccgtt gctcggcgca
     1921 tacacgaacc acggtggccg gcgtgtgttc cacagtcctg cgtacacgac gtccggattg
     1981 gttctgtcga tcacgacttc gatcgcgcca acatcctcgt tcttgtagag aaccttctcc
     2041 cagctcttgc cgccgtcttt cgagcggaag attccacggt ccggattgcc agcgtagaaa
     2101 tgaccgatcg cggcgacgta gacgatgtca gggttgtgcg gatgaacggc gatcttcccg
     2161 atgtgctgcg tgttctcgag gccgatgtgc gtccatgtct tgccggcatc ggtggacttg
     2221 tacatgccgt tgccgtatcc ggtcgaatcg cgcaacgtgc attcgccact tcccacgtaa
     2281 accacgtccg gcgacgatgc ggagacggcg atcgctccga tcgaggcaac cggctgagag
     2341 tcgaaaaccg gcaaccagac tcggcccgca tcaatggttt tccagacgcc gccgttcaca
     2401 gatccgaagt agaactcgtt cggccgaccc ggcacaccac tgacagcgtc ggtgcgaccg
     2461 ccgcggaatg gcccgagcat gcgccagtgg agaccggagt agagatcggc gtaattcctt
     2521 ggcgcgggat cggtggccag cagcggtcgg tgcgttaacg aaccctgcgc gcccgcggtc
     2581 tgcagaaagt ggctgatgcc gggagacgcg acggagagcg ccgcacctac ctgtgtggct
     2641 ctgacaaaga agccacgtcg tgaaagaaca ttctggtccg gcggctgcgc gccggcacct
     2701 gcgagatcag tacttgtctg gtcggacgtc gagcgttttt tcttcacgat ccactccaca
     2761 cggtgggcta gggttcaaca aaacatacga aaaaagtctt tacgacgttc gaacctttgt
     2821 gggaggcacg aagtccagca tcggcgtccc cgtgagcgcg ctctgactcg tcatcgccgg
     2881 tgaaagcgct ctcggactcg tcattcccgc gaaagcggga actcgcatat ccgtcattcc
     2941 cgcggaagcg ggaatccacc tgctgccgat cagctttgtg ctgccatcgc acttgaagat
     3001 cgataacatg gattcccgcg ttcgcgggaa tgacgagctg caggcccgct ttcgcgggaa
     3061 tgacgaccat cagatggatt cccgaggagc ggataaatcc gcgccctaca gcgggaatga
     3121 cgaatgcgag gatgccagct tcacttcacc gtccgcccag cgcctggaac aggtagctca
     3181 gcttcacgaa gaatccatcc tgcgtgcgac gcagccgtcg gaacgcgagt gcgtccggct
     3241 cggtcatcga gtttccgtaa ccggcgaaga acacggtgcc cggcgagggg cggtacgaga
     3301 acagccaatc ggtgcgcaat ccgttcgcga cgttcccgac ggacggcacg taggacgtgt
     3361 cgttgaggat cagtagtgga agccccgtgc gcggatccag cagcgatgag cgcatcgtcg
     3421 cggtgtattg tgtgacgaca cgcacgaata tcgatcgcgt cacctgatac tccaccttca
     3481 cacgcggaat tcgcgtcgac gtcgaacgcg ctccgtcgct gcgacgggtg aatctgctgc
     3541 tcacgtatgt cgcgccgatg cgcagctgtt gtgtagggcg cagatcgagg cttgcattgt
     3601 agtccagccg cttgacacgc gatgtctcga gaaaatcgac atcgttaccg gtcgtgaccc
     3661 caagcgatgc gtcgtatctc gcgaactgag gcgttgacac cttgaacgcg ttggtgaatg
     3721 tggtgattcg tggtgacggc tggaacggaa tgttgcttcc ctgcgtcgtg ctgacgaagt
     3781 cgccgatgta cgccgccgga tcgaaggcgt agctcgcgat tgtcggcgtg acgccgagcg
     3841 accagccgcc gcgcaacgtg aagctggtgt tggcagatgc gttgtcttcg agtaggctct
     3901 tgccagcgaa gaagtcgtcg tagcgccaga ctgcttttgt cgagaagaat acgttgaatt
     3961 tctcgagcag cgcgccgggc ggcccataca ggctcaggcg attggaaatg ccgggcgcca
     4021 cgattcccct gcgtgatacg aagccgttgt cggccgcgaa tgttttacct atgcccagaa
     4081 cgttatagtg aaatccgaat gcgcgtccgg tgcgatcgag cacgagctcc cacatcggtg
     4141 ccgtctgggt cgttccgttc tgcgtcgtat tgctgattgc agcctgtgcc tgagcgtagt
     4201 acaatcgccc gaacacgtag tgaacgtcgc catcgaccac gcgattggat ctgccgccac
     4261 cgacacgatc gctgtagagt attccggccg tgttctgcgc accgaacccg ctgttgagtc
     4321 gtatgatgtc gaccagcggc tgctggccgt tgggtgttgt gctcgccgcg tccagcgcgg
     4381 agagtaccgc aacatcggtg cgaccaagct tgccggtgag tttcatcgca gcattgggct
     4441 gcacgatcgt gcgtgtgtac acgagcgtgt tgggcacgtt gaactggtcg ctgccttcga
     4501 cgaagaacgg acgcttctcc ggatagaaca gtgcgaagcg ctcatccgcc gctatctgcg
     4561 tcgcgtccgc ttcgacctgc gagaagtcgg gcttcaccgt tccgttgagc acgaagttgc
     4621 tgcccaacgc ccagcggacg ttgccgccca gttggggctt ggagctgtac ttccagccag
     4681 tgggacctgg accgcagcag ggattaccgg taacagtgtt ggtcagctcg gggttgagac
     4741 cgaccacctg gccgtggtgc atgtcatgca ttcccaccag caaaccttcc tggccgatga
     4801 agcttgccgc accgctgcgc gccggtgtcc acgtttcctt gtaaccactg tgctgcacgt
     4861 tgcgctggat ctggatgccc cagtcctcgg gcgacttgtt gggatagcgc agactgctga
     4921 atgggatccg gatctccacc tcgtagcccc acggcgtgac gtgccccttg gagtcccaca
     4981 gaaagtccgc gctcagatcg gtctggcccg gacctacgtt ggagcctggt atgaatccgc
     5041 cagtctcgtt cttggtaccg tccgcctgca cacccaacgg gttgacggcg aatacgagcg
     5101 ttcggttgcg ctcgttatac gtgtcgagat ggatctcgat gttgtcgtcc gaactgatgt
     5161 tgtcgcggtc agcaagtgtt gcgcgaacgg ggccgtgtgg ctcgaacgcg cgaatgccga
     5221 agtaaatggc ggtccgtgag taccagacgc gcacatccgt cgagtcgggc gacggacgct
     5281 gatcggccgg agaatactcg gagaagccag tgagcacggc tgcgcggctc cagactggct
     5341 catcgagatt gccatcgaca gttatggttg tatcaatgcg cggagcctgc gcggtgatct
     5401 ggccggcgcg tccgttatac acgggggccg gctgggccgc ggcgagctga aacgcgccga
     5461 gaaatgccag gaacatggtg cagtaaatgt agcgtggcac acgacggcgg ccatcgcgcg
     5521 tcgcactaca tttcattatg cgtacatccc gatttcgttg tggcctcgcc gcgctaccgg
     5581 tggctggcgc actggtcctg atgccctcgt ccgcccgtgc tcagacgccc gcggcggcgc
     5641 ttacaaagca ggaaagagcg gtcgtcaggg cggtggactc gcacaacgcc gccgcactcg
     5701 ccctgctcga gcgtaccgtc aacatcaaca gcggctcgct caacttcgcc ggcgtgcgcc
     5761 gcgtcggcga catcttccgg gcacaatacg actcactcgg cttcaccacg cgctgggtcg
     5821 atggcgcagc attccatcgc gcgggacatc tcgtcgccga gcacccgggg ccgggtccca
     5881 agatcctcct gatcggccat ctcgataccg tgttcgagcc aagcagcccg tttcagaagt
     5941 tcacgatgtt gaacgattcg acagcgacgg ggccgggcgt catcgacatg aagggcggcg
     6001 acgtgatcgc gctatatgcg ttgcgcgcgc tcaaggatgc cgggctgctg agtaaaatga
     6061 atgtgacggt tgtgtatcac ggcgacgagg aagagtcagg cacaccgttg agtctcgcgc
     6121 gcaagacact gatcgatgct gcgcacggag cgaccgccgc actcggcttc gaggacgccg
     6181 cgggtgatcc gcgcacgctg gtgatatcgc gccgtggcga cgacggatgg acgctgcgca
     6241 cgacgggagt accggcgcat tcgtcgcaga tatttacaag tgaagtcggc gccggcgctg
     6301 tgtacgaggc gtcgcgcatc ctcgatcagt tctaccagaa actttcgagc gagcagtatc
     6361 tcaccttcaa tcccggcctc gcgctcggcg gcacttcagt gaaagccgac agcagcggca
     6421 cggaaggcag tgcggctggc aagagcaatg tcgtcgcgaa ggagatgttc gtcaccggcg
     6481 atctgcgcac gctatctccg gagcagctcg cacatgcgcg caagaccatg accgacatcg
     6541 tcgccgatca tctgcctaac acgacggcag agataacgtt cgcggacggt tatccgccaa
     6601 tggcgccgac cgacggcaat cgcaagctcc tcgcgatgta cagcaaggtg agcaccgacc
     6661 tcggcttctg gcccgttacg gcagtcgatc catcgcgcgc cggcgcggcc gacgtgtcgt
     6721 tcgtcgcgag catagtgcca atggcggtcg atggcctcgg actgtccgga cacgacgatc
     6781 acaccgagaa ggaaacggcg gatctacgca tgttgccggt gcagacgaag cgcgcggcag
     6841 tgttgatgta caggctcagc aacccggcca gcaatccgaa gtgatgcagg aagtgttgta
     6901 ggaagtgttg tagacatacc acgctctcac gcaatacaat gaaccgtaag ccactggcag
     6961 catcgacagt cgtcgctgta ctcgcgtccg tgatgttcat caacgcgcca ctcggagcgc
     7021 aggtcgtccc aaagccggtc acaaaggcgc gtggagatac agtactccga caaccgtcgc
     7081 caacaggaag tgacacgagc cgggcgcgcc aggataccac cgccggaaag atccccgtcg
     7141 gtgattcact cacgcggttc atcgacaagt tttcgttccg gaatctgggg ccggccgcgt
     7201 acagtggacg cgttacggct attgcagtgc caaagccatt tcgcaagacg atctacatag
     7261 gctccgccgg cggtggcgtg t
//
LOCUS       DATIMD010000072         2490 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2916307, whole genome shotgun sequence.
ACCESSION   DATIMD010000072 DATIMD010000000
VERSION     DATIMD010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2490)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2490)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2490
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2916307"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..993)
                     /locus_tag="VLI40_01670"
     CDS             complement(46..993)
                     /locus_tag="VLI40_01670"
                     /inference="COORDINATES: protein motif:HMM:NF013046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase"
                     /protein_id="HSU95907.1"
                     /translation="MHRTAFISHSDCGRHDTGWGHPEHVGRLVAIMRAVRNDFELFQQ
                     LEHVEGRHATVDELSLVHDRAYIESVRALCASGGGRLDIDTVASEGSWDAATAAAGCV
                     LDGVDMAIDGRATRSFAGIRPPGHHAVRDRAMGFCIFGSVALGAHYARKVHNLDRVLI
                     VDWDVHHGNGTQALVQDDPGIRFLSMHQWPFYPGTGAASDHGPHGTVLNAPMAAGLDP
                     MQYVETFERSFDILTDDFQPELVLISAGFDCLAGDAIGGFTLEMEHIDRLTRFVTARA
                     DAACGGRVVSALEGGYTPLRLAEAVVVHMRALAALTAAG"
     gene            complement(1040..1372)
                     /locus_tag="VLI40_01675"
     CDS             complement(1040..1372)
                     /locus_tag="VLI40_01675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95908.1"
                     /translation="MSATFVNSLRAPDDVISIGEPAAGNVLRFRVQAQEVWNLVRIDA
                     RPMESVRTAKMYALNALIPDALFPDEFSVKLNGCEIFDESISLSQAGVLDGSTLLVAR
                     RRRRPVKS"
     gene            complement(1369..1704)
                     /locus_tag="VLI40_01680"
     CDS             complement(1369..1704)
                     /locus_tag="VLI40_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95909.1"
                     /translation="MAQTDRTLQETFTTLSPAEVLDAAKHFFSRRNSIYTAFLDMEGP
                     TFVSMRGMGGEELVIGVMQRDGLTVVSGSTYMFDQQVARFLSSLPTADPPGVGAIPRE
                     LPESTTVTA"
     gene            complement(1770..>2490)
                     /locus_tag="VLI40_01685"
     CDS             complement(1770..>2490)
                     /locus_tag="VLI40_01685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95910.1"
                     /translation="GDRPGKRPRAFCSPVRIPEEVYLVLRPRGGQSDYGTFLHELGHA
                     LHFGNARSDYPFEYRWLGDNSVTESYAMLFDHRMQQREWLLRYTGLDRKRAAAFLRLA
                     GFEELHFVRRYCAKLLYEIQVYSGAVDWKALPDIYVEILAAATGFQYRRADAFIDLDS
                     RFYSTRYLRAWQLQALLDEGLVDRFNEDWWRNPAAGPWIVGELFAEGQRENASEVGWR
                     AAGAEISFAPLTRKIESLLES"
BASE COUNT          492 a          796 c          753 g          449 t
ORIGIN      
        1 gctggcgccg gagtggttct attcccttct ggcatccagc gaaagctatc cggctgcagt
       61 cagggcggcg agtgcacgca tgtgaacgac caccgcttcc gccagccgaa gcggtgtgta
      121 gccgccttcc agcgcgctca caacccttcc tccacatgca gcgtcggcgc gtgcggtaac
      181 gaatcgcgtc agccgatcta tgtgctccat ctccagtgta aagccaccga tagcgtcacc
      241 cgcgaggcag tcgaagccgg cagagatgag caccagttcc ggctggaaat cgtcggtcaa
      301 tatgtcgaac gaccgttcga acgtctcgac atactgcatc gggtcgagac cggctgccat
      361 gggagcgttg agcaccgttc cgtgcggccc gtgatctgaa gccgcgcccg tgcctggata
      421 aaatggccac tgatgcatgg acaggaaccg gatccccgga tcgtcctgca ccagcgcctg
      481 ggtgccgttg ccatggtgga cgtcccagtc gacgatcaga acgcgatcga gattgtggac
      541 cttgcgagcg tagtgcgcgc cgagtgcgac gctgccgaag atgcagaaac ccatcgcccg
      601 gtcgcggacc gcgtggtggc cgggcggccg aatacctgcg aagctgcggg tagcgcgtcc
      661 gtcgatcgcc atatcgacgc cgtcgagcac gcagccggcc gccgccgttg ctgcgtccca
      721 tgagccctcg ctggcgaccg tatcgatatc gagccgcccg ccgcccgagg cgcagagtgc
      781 gcggacagac tcgatgtagg cccggtcgtg aacgagtgac agctcatcga ccgttgcgtg
      841 gcgtccctcg acgtgctcga gctgctggaa caactcgaag tcgttgcgca cggcgcgcat
      901 gatcgcgacc agccgtccga cgtgttcggg atgtccccag ccggtgtcgt gacgaccgca
      961 gtcggagtgg gagatgaatg cggtacgatg catgtgggac gtgcgggaaa ttaaagggcg
     1021 ggcacgggga cttgccctgc tacgacttta ccggacgccg cctccggcga gcaaccagca
     1081 acgtcgatcc atccagtacg cccgcctgcg acagcgatat cgactcgtcg aatatctcgc
     1141 agccattcag ctttaccgaa aactcatcgg ggaacagcgc atccggaatc agtgcgttca
     1201 gcgcgtacat cttggctgtg cgaaccgatt ccatgggccg cgcgtcgatg cgaacaaggt
     1261 tccagacttc ctgtgcctgg acgcggaaac ggagcacgtt gccggcggcc ggctcgccta
     1321 tcgaaatcac atcgtccggc gcgcgcagcg agtttacgaa cgtcgcgctc atgccgtcac
     1381 cgtcgttgac tcgggcagct cgcgcgggat ggcgccaact cctggtggat cggcggtcgg
     1441 caacgatgag aggaaccgcg ccacctgttg atcgaacatg tacgtcgatc ccgagactac
     1501 tgtgagtccg tctcgctgca tcacgccgat caccagctcc tcgccaccca tgcctcgcat
     1561 cgagacgaaa gtcggtcctt ccatatcgag gaaggctgta tagatcgaat tgcgtcgcga
     1621 aaagaagtgc ttggctgcat caagcacctc tgctggggag agcgtggtga acgtctcctg
     1681 aagggtcctg tctgtctgcg ccatgggcga aatctaaccg accacgcccg cagccggcca
     1741 gagtcaggac tccagctcag gactccaact caggactcca gcagcgactc gatcttccgc
     1801 gtgagtggag cgaaactgat ttcagcgccg gcggcgcgcc atcccacctc gctcgcgttc
     1861 tccctctgtc cttccgcgaa cagctcgccg actatccacg gccccgcagc aggattgcgc
     1921 caccagtcct cgttgaatct gtcgaccagc ccttcatcca gaagtgcctg aagctgccac
     1981 gcacgcaggt atcgcgtcga atagaagcgt gaatcgaggt cgatgaacgc atcggcgcgg
     2041 cgatactgga atccggtcgc cgcagccagt atctcgacgt agatgtccgg cagcgccttc
     2101 cagtccacgg cgccgctgta cacctgtatc tcgtaaagca gcttcgcgca gtaacgcctg
     2161 acgaaatgca attcctcgaa cccagcaagt cgcagaaaag cagcagcccg ttttctgtcg
     2221 agtccggtat agcggagcag ccattcacgc tgttgcattc ggtgatcgaa cagcatggcg
     2281 tagctctcgg taaccgaatt gtcgccgagc cagcgatact cgaacggata gtcggagcgc
     2341 gcgtttccaa agtgcagcgc atgtccgagc tcatgcagaa atgtgccgta atcggattgc
     2401 ccaccgcgtg ggcgcagcac gagatacacc tcttccggaa tgcgcacggg tgagcagaat
     2461 gcgcgcggtc gcttgcccgg tcgatcaccg
//
LOCUS       DATIMD010000073         5354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3206350, whole genome shotgun sequence.
ACCESSION   DATIMD010000073 DATIMD010000000
VERSION     DATIMD010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5354
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3206350"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..457
                     /locus_tag="VLI40_01690"
     CDS             <1..457
                     /locus_tag="VLI40_01690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95911.1"
                     /translation="PPGRVADLTANTFARVGGVAINFDGALAAVRADSIYLFNQDLRH
                     QGTFQTATSGNPGFDFDPRNSGNGITGSSPLKSCYSFAASTEPSIEVYENNHFKRIAV
                     IPIKNPIIGPIKSAVRQPSGQLILVGATAKGVVIVNVDPALFGGVSCPP"
     gene            886..2109
                     /gene="aroC"
                     /locus_tag="VLI40_01695"
     CDS             886..2109
                     /gene="aroC"
                     /locus_tag="VLI40_01695"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HSU95912.1"
                     /translation="MLRFTTAGESHGAALVSILEGVPAGVPLLVEDVDAQLARRQAGY
                     GRGRRMQIETDRAELLSGVRAGETLGSPIAMLIRNHDWRNWQDIMNPAPLADESEHPG
                     LRKRAVTRPRPGHADLAGMLKYDRPDARDILERASARETTARVAAGAVCRVLLRQLDV
                     KIGSHLVELGDIVARVPESLPSDLNAAADRSPLRTLDGDAETRMIALIDEAKRSGDTL
                     GGICEVVITGLPVGLGSHVSWDRKLDGRLAAALMSIPAVKGVEIGMGFQAARLHGSRV
                     HDEIDPAEAAVARGRLSRRTNNAGGLEGGMTTGEPLVIRVAMKPISTLMRPLGSVEMT
                     TRESAASTVERSDVTAVPAMGVIAEAMAAFILADALIEKFGGDSLGEVRRNHAGYLRY
                     LAERDSDHATGRDSG"
     gene            2106..2666
                     /locus_tag="VLI40_01700"
     CDS             2106..2666
                     /locus_tag="VLI40_01700"
                     /inference="COORDINATES: protein motif:HMM:NF013375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HSU95913.1"
                     /translation="MTDSGKLKHVVLIGLPGVGKSTVGRGVAAQLKRGFIDLDTHIER
                     SFGKTVGRIFEEEGESAFRQAEAETTAAVARMAPSVIAPGGGWVLNSDATAHLLGSGR
                     IIYLRVAPEAAVRRMGRGIRRRPLLFRSEDPYEAMRMIYEARKAAYERSSEMTVETGN
                     LARSTVIARVVELVLSAERDCENEND"
     gene            2659..2919
                     /locus_tag="VLI40_01705"
     CDS             2659..2919
                     /locus_tag="VLI40_01705"
                     /inference="COORDINATES: protein motif:HMM:NF016264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 family protein"
                     /protein_id="HSU95914.1"
                     /translation="MTEGIDGYSVPRPMRVLGPHERARFTAEAWGYLVGLSRSGLLDA
                     VELEHVIERVLTHFDGRVALTDLRLVLGDAGSDGGDASIITH"
     gene            2990..>5354
                     /gene="topA"
                     /locus_tag="VLI40_01710"
     CDS             2990..>5354
                     /gene="topA"
                     /locus_tag="VLI40_01710"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HSU95915.1"
                     /translation="MAIRKTATKSAEPKKTTAAKPAVRKTARKAVGKAVGKAASKTAG
                     KGVRKTAVVEAASYDDDISGDGVGNGQALVIVESPAKAKTIGKYLGRGYKVRATIGHV
                     RDLPEKKMGIDVDNGFEPEYVTIPGKEKTLAELKSAARESSQIFLATDPDREGEAIAW
                     HVASQIKRKGGAPVRRVLFHEITRDAVRAAIDNAGHINERLVEAQLARRMLDRLVGYK
                     ASPMLWKTVKKGASAGRVQTVALRLIVEREREIRAFKPVEYWTIAALLEKDRQEFTAK
                     LHHVDGKKPEISNAADAQRILDDVSGLKTFPVTEVKRRERRKNPYAPFTTSTLQQEAA
                     KRLGFGSKRTMRMAQDLYEGIEIGAEGAVGLITYMRTDSTRVSDSAATAARDYLRTLF
                     GEEFLARGGPQLYGDNKSKNTQDAHEAVRPTDPTRRPDAVKRYLKDDQFKLYELIWKR
                     FMASQMAPAVFDTTTVNFDLGRYVFRATGSVMKFAGYQALYQEAREAGDGKALEDEQA
                     LPAMSEGEKIPVKRIEPTQHFTEPPPRFSEASLVKELERLGIGRPSTYASIISTLADR
                     RYVLLEQRRFFPTDLGEQVERVMVKSLPDVFNVQFTSNMESDLDKVEDGSVDWREMLG
                     AFYGPFADQVKHADVEGLIAAAHDLSAFEGQKCPDCGGKLVPRGGFFGPFMACENHPK
                     TCKFTRPLRGEKKVARATDEICHECGAPMVVRTGRSGEFLGCSKFPKCRGTRSMPTGV
                     KCPKCGGDVAVRRSKKRGKAFYGCATYPACDFVVWDKPVAETCPECGF"
BASE COUNT         1077 a         1522 c         1781 g          974 t
ORIGIN      
        1 accacctggg cgcgtcgctg atctcacggc aaataccttc gctcgtgtgg gcggcgtagc
       61 catcaacttt gacggtgcgc tcgccgcagt gcgtgcggat tccatctacc ttttcaacca
      121 ggatctcaga caccagggaa cgttccagac ggcaacgtcc ggtaatcccg ggttcgattt
      181 cgatccgcga aacagcggca acggaatcac cggttcgtcg ccgctaaaat catgctactc
      241 gttcgccgcc tccacggagc cgtcgataga ggtgtacgag aacaaccact tcaagcgtat
      301 cgcggtgatc ccgatcaaga acccgatcat cggcccgatc aagtcggcgg tacgccagcc
      361 gagcggtcaa ttgattctcg ttggcgcaac ggcgaaggga gtagtgatcg tgaacgtcga
      421 tcctgcactg ttcggcggcg tcagctgccc accgtaagct cggcggacct ggagaaaggc
      481 gatagcgaca aagcccggcg atgagccggg ctttgttgtt agtgagatgc ggcgcgagag
      541 tgttggaagt ggcagcagga ctacggttgt gatatctgga tcgggcgggt cgtgcgggct
      601 cgtgcgggct cgggcagtgt cggacttgta ctgcataggg agcaggctgt gtcactccat
      661 gtaaaagcag aaccaaattg tgtgatcgag taaatgtgtg atcggggtat cgagcctagt
      721 cacaccacct tggcccttgc ctgggtaggt ccatgcacag agcttgagtg ccgcaccggg
      781 taggattggc tgtcctctcc catccatgac ggtcgcggaa ttttggcgct gccggaccga
      841 attcgtttgc cggaccgccc ccgcccgggt ttattattgt cccaaatgct tcgttttact
      901 actgctggcg aatctcacgg cgccgcgctt gtatcgatcc tggaaggagt gcctgccggc
      961 gttccgttgc tcgtcgaaga cgtggacgcg caactggcac ggcgccaggc gggctatggc
     1021 cgcggccgac ggatgcagat cgaaacggat cgcgctgagc tgttgagtgg cgtgcgtgct
     1081 ggcgagacac tcggatcgcc gatcgcgatg ctcatccgta accacgactg gcgcaactgg
     1141 caggacatca tgaatccggc gccactcgcg gacgagtcgg aacatcccgg cctccgaaag
     1201 cgggctgtga cgcgtccgcg ccccggccac gccgacctcg cgggaatgct caagtacgac
     1261 cgcccggacg cgcgcgacat actggaacgc gcttccgctc gcgagaccac cgcccgggtc
     1321 gccgcaggtg ctgtctgccg cgttttgttg cgtcagctgg acgtgaagat cggaagccat
     1381 ctggtggagc tgggagacat agttgcgcgg gtgccagaga gtttgccgtc cgacctgaac
     1441 gccgcggccg acagatcacc gcttcgtact ctcgacggtg acgctgaaac acgcatgatc
     1501 gcgctcatcg acgaggcgaa gcgatccggt gatacgctgg gtgggatctg cgaggtagtg
     1561 ataaccggtc ttcctgtcgg tctggggtcg cacgtttcgt gggatcgcaa actcgacgga
     1621 cggctggccg cggcgctcat gtccattccc gccgtaaaag gggttgagat cggaatggga
     1681 tttcaggcgg ctcggttgca cggctcacgc gtccacgacg agatcgatcc tgcagaagcc
     1741 gcggttgcgc gcggccggtt gagccgacgc accaataacg cgggcggact cgaaggcggc
     1801 atgacgaccg gcgaaccgct cgttattcgt gtcgcaatga agccgatcag cacgctgatg
     1861 cgtccgctcg gctcggtcga gatgaccacg cgcgagagcg ccgcctcgac ggtcgaacga
     1921 agcgatgtca cggcggttcc ggccatgggc gtcatcgccg aggcgatggc ggcattcatc
     1981 cttgcagacg cgctgatcga gaagttcggc ggagactcgc tgggtgaagt gcgccggaac
     2041 cacgcgggat atctaaggta tctggctgag cgtgacagcg accatgcgac agggcgcgac
     2101 tctgggtgac tgactccgga aagctgaagc acgtagtgct catcggattg ccgggcgttg
     2161 gcaagagcac cgtcggccgt ggcgtcgccg cgcagttgaa gcgtggcttc atcgacttgg
     2221 atacgcatat cgaacggtcg ttcggaaaga cggtcggtcg aattttcgag gaagagggag
     2281 agagtgcctt tcggcaggcg gaggcggaga ccaccgctgc ggtagcccgt atggcgccat
     2341 cggtgatcgc accaggcggc gggtgggtgc tcaactccga cgccacggca catttgctcg
     2401 ggtctggacg tatcatatac cttagagtgg caccggaagc cgccgttcgt cgtatgggac
     2461 gggggatccg gcgacggcca ttactgttca gatccgagga tccgtacgaa gccatgcgca
     2521 tgatctatga agcacgcaag gctgcatatg agaggtcctc ggagatgacc gtcgaaacag
     2581 gcaaccttgc aagatccact gtgatcgccc gggtggttga gctggtgctc tccgccgagc
     2641 gtgactgcga aaacgagaat gactgaagga atagacggtt acagcgtacc acgcccgatg
     2701 cgagttctcg gaccacacga gcgcgcccgc ttcactgctg aagcctgggg gtatctggtc
     2761 ggcctgagcc ggtcggggct tctagacgcc gtggagctcg agcatgtgat cgaacgcgta
     2821 ctgacccatt ttgacgggcg tgtcgcattg accgatctcc ggctcgtcct cggcgatgca
     2881 ggctcggacg gtggcgacgc ttcgataatc acgcactagg tacgcgtcct gaagaactag
     2941 cggtaccaac tacgcattga atccggagcg atccggcaac ggtaaaatca tggcaataag
     3001 aaagacggca accaaaagcg ccgaaccaaa aaaaacgaca gccgcaaagc cggcggtccg
     3061 aaagaccgct cgcaaggctg tcggtaaagc tgtcggcaaa gctgccagca agacggccgg
     3121 caagggcgtg cgcaagactg cggtggtgga agcggcttcg tatgacgacg acatttcagg
     3181 tgacggagtg ggcaacgggc aggctcttgt aatcgtcgag tcgccggcga aggccaagac
     3241 gatcggcaag tatctcgggc gcggttacaa ggtgcgcgcg acgattggtc acgtccgcga
     3301 tcttccggag aagaaaatgg gcatcgacgt cgacaacggc ttcgagcccg agtacgtcac
     3361 gatcccgggc aaggagaaga ccctcgcgga gctcaagtcc gccgccaggg aatcgagtca
     3421 gatcttcctc gcgaccgatc ctgatcgcga gggcgaggcg attgcgtggc acgtcgcgtc
     3481 gcagatcaaa cgcaagggcg gcgcgccggt acgccgcgta ttgtttcacg aaataacacg
     3541 cgatgcggtg cgtgcggcga tcgataacgc gggacacatc aacgaacgtc tcgtcgaggc
     3601 tcagctcgca cgtcgcatgc tcgaccgcct ggtcggttac aaggcgagcc cgatgttgtg
     3661 gaagacggtg aagaagggcg cgtcggcggg ccgggtgcag actgttgcat tgcggctcat
     3721 tgtcgagcgt gagcgtgaga ttcgtgcgtt caagccggtc gagtactgga cgatcgcggc
     3781 actgctcgag aaggaccgtc aggaattcac agcgaagctg caccatgtcg acggcaagaa
     3841 gcccgagata tccaacgcgg cagacgcgca gcgcattctc gacgacgtca gcggtctcaa
     3901 gacgttcccc gtaaccgagg tcaagcgtcg cgagcgtcgc aagaatccgt acgcgccatt
     3961 cacgacgagc accctgcaac aggaagcggc caagcgactg ggcttcggct ccaagcgcac
     4021 gatgcggatg gcgcaggatc tgtacgaggg aatagagatc ggcgccgagg gcgcggtggg
     4081 actcattacg tacatgcgta ctgattcgac gcgcgtctcg gatagcgcgg cgactgccgc
     4141 gcgcgattat ctgcggacgc tgttcggcga ggagtttctc gcgcgcggtg gcccgcagct
     4201 ctatggcgat aacaagagca agaacacgca agacgcgcac gaggccgtgc gtcccaccga
     4261 tccaacgcgt cgcccggatg ccgtcaagcg ttatctgaag gacgatcagt tcaaacttta
     4321 cgagctgata tggaagcgtt tcatggcttc gcagatggcg ccggcggtgt tcgatacgac
     4381 gaccgtgaat ttcgatctcg ggcggtacgt attccgcgcg acgggaagcg tcatgaagtt
     4441 cgcgggctac caggcgctgt atcaggaggc acgcgaagct ggcgacggca aggcgctcga
     4501 agatgagcag gcgctgccgg ctatgtccga aggtgagaag attccggtca agcgcatcga
     4561 gcccacacag cacttcactg agccgcctcc gcggttctcg gaagcgagtc tggtaaagga
     4621 gctggagcgg ctcggcatcg gtcgcccttc gacttatgca tcgatcatct cgacgctcgc
     4681 ggaccggcgt tacgtgttgc tggagcagcg tcgcttcttt ccgaccgatc tcggcgagca
     4741 ggtcgagcgc gttatggtga agagtctgcc cgatgtcttc aacgtgcagt tcacgtcgaa
     4801 catggagagc gacctcgaca aggtcgagga cggcagcgtc gactggcgcg aaatgctcgg
     4861 cgcgttctac gggccgtttg cggatcaggt gaagcatgcg gacgtcgagg gcctgatcgc
     4921 cgctgcacat gatctgtctg cattcgaggg gcagaagtgt cccgattgcg gtggcaagct
     4981 cgtcccgcgt ggcggcttct ttggaccgtt catggcgtgc gagaaccacc ccaagacgtg
     5041 caagttcacg cggccgcttc gcggggagaa gaaagttgca cgcgcgacgg acgagatctg
     5101 tcacgaatgc ggtgcgccga tggtggttcg aaccggccgc agcggtgagt tcctcggttg
     5161 cagcaagttt ccgaagtgcc gcggaacacg ttcgatgccg acgggggtca agtgccccaa
     5221 gtgtggtggc gacgtcgcgg tgcgccggtc caagaagcgc ggcaaggcgt tctacggatg
     5281 cgcgacatat ccggcttgcg actttgtcgt gtgggacaag cccgttgcgg aaacgtgtcc
     5341 tgagtgtggc ttcg
//
LOCUS       DATIMD010000074         3965 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2629143, whole genome shotgun sequence.
ACCESSION   DATIMD010000074 DATIMD010000000
VERSION     DATIMD010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3965
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2629143"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..337
                     /locus_tag="VLI40_01715"
     CDS             <1..337
                     /locus_tag="VLI40_01715"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSU95916.1"
                     /translation="NMATARDLAILLRDIETGKAASPASSDAMRDILLAQQFNDKIPA
                     GLPPGTRVAHKTGDITAIAHDAAIVYPANRKPYILVVLTKGIADEKVANTLIADVSRI
                     VYQHAMATH"
     gene            339..2465
                     /locus_tag="VLI40_01720"
     CDS             339..2465
                     /locus_tag="VLI40_01720"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSU95917.1"
                     /translation="MRTISSTLSVTITAYVAISACPLRAQTTTATTAPAFTIPQILSA
                     PFPTDLVASPRGDAIAWVFDQAGPNNLWIARAPDWRARAITPYTADDGWEMSSPRWLP
                     DGSGVVFVRGSAKNDRGEYPNPALDAKGRSQLVMLARVDGGAPRTLAEGAAAEPSPDG
                     RMVAFTRGGVIYTVALDSGTSGAHERRLFVGRGRDGNVRWSPDGSRIAFTSTRTDHSF
                     IGVFNVRDSTLRYMAPSVDDDGYAVWAPDGRSLAFIRQPTRTRQPQHALRRAGQPWSI
                     LVADPATGTARELWRASRGPGSLFRRTDSRDQLIWSADDRIVFPWESGGWNRFYSISA
                     GGAAGAPVALTAGDREVVSVTPAVDGRSIVYVANEGNRVDLLHLWSVPTSGGTPTLLT
                     PGSGIEWKPAAVQGGVALLRSGATTPARPAMLRGAGPVTDLAPTTIPADFPSSQLVAP
                     QQVTFRSTDGLLLHGQLFVPSNARDGKRHPAVIFYHGGSQRQMLLGFNPMGYYHNAYG
                     LNQYLVSRGYVVLSVNYRSGIGYGLDFREALDYGPGGGAEARDAIAAAHYLRARSEVD
                     PARIGVWGGSYGGYMTALSLARDPADYKVGVDFAGVHDWNLEWSRMDDTWDEDLEMKA
                     RRLAYASSPMSDLSHWTAPVLLIQGDDDRNVDFRQTVQLTEDLRNRGVHVETLIYPDE
                     THEWLLHSHWIQSYEATAAFLERYLR"
     gene            complement(2671..>3965)
                     /locus_tag="VLI40_01725"
     CDS             complement(2671..>3965)
                     /locus_tag="VLI40_01725"
                     /inference="COORDINATES: protein motif:HMM:NF020892.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HSU95918.1"
                     /translation="LEISYDRFVRTTSEQHKAGVRALIERIFERAPENFYTRTYAGWY
                     CVGCEAFKTDEEIVDGKCVLHPTRTLEWVEERNWFFRLSAYTDRLRTLIASGNFLQPR
                     SRANEILSLIDQGLEDVSASRAREGWGVPFPRDTGDGEPQTTYVWFDALPNYITAVGF
                     PDTNGEFAKWWPVDVHVIGKDITRFHSLIWPAMLIAAELPVPKLVWAHGFVLLGGDRF
                     SKSAGVTLDLQDAVSRFGADPFRYFLMREVPFDADGNFSWERFEERYNADLANAWGNL
                     ASRTIAMIEKYRDAVIPSAELNELDAVDAADMAAYDAAMQDNLPNRALEYVWATVARG
                     NEYVDRQAPWKLARDPAKQDELDATLAALARQLTRQAIALSPFMPGRCAELLSQLGAP
                     ADFLATPGRLDEGGVTTFDVTGWRVAKGASLFPKKEPA"
BASE COUNT          739 a         1293 c         1203 g          730 t
ORIGIN      
        1 caacatggcg accgcacgcg acctcgcgat tcttctacgc gacatcgaga cgggaaaggc
       61 ggcatcgccg gcgtccagcg acgcgatgcg cgacattctc ctcgctcagc aattcaacga
      121 caagattccc gctggactcc cgcccggtac acgcgttgcg cacaagacag gcgacataac
      181 ggcaatcgcg cacgacgcgg cgattgtgta tccggccaac cggaagccct acattcttgt
      241 ggtgctcacc aaggggatcg cggacgagaa ggtcgccaac acgcttatcg ccgatgtatc
      301 ccgcatcgtt taccagcacg caatggcaac gcactgacat gcgcacaatc tcatcgacgc
      361 tgtcggtaac cattactgcg tacgtcgcga tctccgcgtg cccgcttcgt gcgcagacca
      421 cgaccgcgac cactgcacct gcgttcacca tcccgcagat actgagcgcc ccctttccga
      481 cggatcttgt tgcatcgccg cgcggcgatg cgatcgcatg ggtcttcgat caggccggtc
      541 ccaacaatct gtggatagca cgcgcgcctg actggcgtgc gcgcgcgatc acaccgtaca
      601 ccgcggacga cggctgggag atgagctcgc cgcgctggct ccccgatgga agcggggtgg
      661 tgttcgttcg cggctcggca aaaaacgatc gtggcgaata tccaaaccct gcgctcgacg
      721 cgaagggacg aagccagctg gtgatgctgg cgcgtgtcga cggcggtgca ccacgcacgc
      781 tcgccgaggg cgcggccgcc gagccgtcgc cggatggaag gatggtggca tttacgcgag
      841 gcggcgtgat ttacacggtc gcgctcgaca gtggaacgag cggcgcgcat gaacggcgtc
      901 tgttcgtagg tcgcgggcgc gatggaaacg tgcgatggtc gcccgatgga tcgagaatag
      961 cgttcacgag cacccgcacc gatcactcct tcatcggagt cttcaacgtg cgcgactcga
     1021 cgcttcggta catggctcca tcggtcgacg atgatggcta tgccgtctgg gcgccggacg
     1081 gacgctctct ggcgttcatc aggcagccca cgcgcacacg gcagccgcag catgcgctac
     1141 ggcgtgcagg gcagccctgg tccatcctgg tggccgatcc ggcgactggc actgcacgcg
     1201 agctctggcg ggcgagtcgc gggccgggaa gcctgttccg tcgcaccgat tcacgcgacc
     1261 agctcatctg gagcgccgac gatcggatag tgtttccatg ggagtcaggc ggctggaatc
     1321 gcttctactc gatctccgcg ggcggcgcag ccggagcgcc agttgccctc acggcgggtg
     1381 atcgcgaggt cgtgtccgtt actcccgctg tcgatgggcg cagcatagtc tatgtggcga
     1441 acgaggggaa tcgtgtcgac ctgctgcacc tctggtcagt gccgacgagt ggcggtacgc
     1501 cgacgctgct gacgcccggt agcgggatcg aatggaagcc cgctgcggtg cagggcggcg
     1561 tcgcgctgct gcgttcagga gcgacgacgc cagcgcggcc ggcgatgttg cgcggtgcgg
     1621 gtccagttac cgatctcgcc ccaacgacga ttcctgcgga ttttccgtca tcgcagctcg
     1681 tcgctccaca gcaggtcacc ttccgatcaa ccgatggtct gctgctgcac ggacagctct
     1741 tcgttccgtc caacgcgcgc gacggaaagc gccatccagc cgtcatcttc taccacggcg
     1801 gctctcagcg ccagatgctg ctcggcttca acccgatggg ctattaccac aatgcgtacg
     1861 gactcaatca atatctggtg agtcgcggct acgttgtttt gtcggtgaac taccgcagtg
     1921 gaatcggcta cggtctcgac ttccgcgaag cactcgacta cggccctggc ggcggcgccg
     1981 aggcgcgcga cgcgatcgca gccgcgcatt atctacgcgc tcggagtgaa gtcgatcccg
     2041 cgcgcatcgg tgtctggggc ggctcgtacg gtggctacat gaccgcgctc tcgctcgccc
     2101 gtgatcctgc cgactacaag gtcggcgtgg atttcgccgg cgtgcatgac tggaatctcg
     2161 agtggagcag gatggacgac acgtgggatg aggatctcga gatgaaggca cgccgcctcg
     2221 cgtatgcctc gtcaccgatg agcgatctgt ctcactggac cgctcccgtg ctgctgattc
     2281 agggtgatga cgaccgcaac gtagacttca ggcagaccgt gcaactgacc gaggacctgc
     2341 gcaaccgcgg agttcacgtc gagacgctga tctatccgga cgaaacgcac gaatggttgt
     2401 tgcattcgca ctggattcag tcgtacgaag caacggcggc gtttctggaa cggtatttac
     2461 gatgacgacg cgcggctgga taacgacatt cgacgaaccc ggcgttaatc caattctgat
     2521 cgcacgtaac ggggccaggc gcggataaat ccgcgcccta cgcatgcgta ccaattcggc
     2581 gcatggttag cgtcgccgga aacgcgggac caccaattcg acgcgtggtt agcgtcgtcg
     2641 gaaacgcatt ccaccaattc ggcgcgtccg ttacgccggt tcctttttcg gaaacaacga
     2701 cgcgcccttc gccacgcgcc aacccgtcac gtcgaacgtc gtaacgccgc cttcgtccag
     2761 cctgcccggc gtcgcgagaa aatctgccgg cgcgcccagc tgtgacagaa gctccgcaca
     2821 ccgccccggc atgaacggcg acaatgcgat agcctgccgt gtcaattgtc tcgccagcgc
     2881 ggcaagcgta gcatccagct cgtcctgctt cgccggatcc ctggccagtt tccatggcgc
     2941 ctgccggtcc acgtattcgt tcccgcgcgc gaccgtcgcc cagacgtatt ccaatgcccg
     3001 attggggagg ttgtcctgca tcgccgcatc gtacgccgcc atgtcggccg catccaccgc
     3061 atccagctcg ttcaactccg cggaaggaat gacagcgtcg cgatatttct cgatcatcgc
     3121 gatcgtgcgg ctcgcaagat ttccccatgc gttggcgagg tcggcgttgt aacgctcctc
     3181 gaatctctcc cacgaaaagt ttccgtcggc gtcgaacgga acttcgcgca tcaggaagta
     3241 ccggaacgga tccgcgccaa agcggctcac cgcatcctgc agatccagcg tcactcccgc
     3301 ggacttgctg aaccggtcgc cgccgagcag aacgaatccg tgtgcccaca ccagctttgg
     3361 caccggaagc tcggcagcaa tcagcatcgc cggccagatc agcgaatgga aacgagtgat
     3421 gtccttgccg atgacgtgca cgtcgacggg ccaccacttt gcgaactcgc cgttggtatc
     3481 cggaaaacct acagccgtga tgtagttggg aagcgcgtcg aaccacacgt aggtcgtctg
     3541 tggctcacca tcacccgtgt cgcgagggaa gggaactccc catccctcac gcgcgcgact
     3601 tgcggagacg tcttccagtc cctgatcgat gagcgacagt atctcgttcg cacggctccg
     3661 cggctgcaga aaatttccgc tcgcgatcag cgtccgcagc cggtccgtgt acgcgctgag
     3721 cctgaagaac cagttgcgct cctcgaccca ttcgagcgtg cgcgttggat gcagcacaca
     3781 cttgccgtcg actatctctt cgtccgtctt gaacgcctcg cagccgacgc agtaccagcc
     3841 ggcgtacgtc ctggtataga agttctcagg cgcacgctcg aagatgcgct cgatcagcgc
     3901 acgaacgccg gccttgtgct gctcactcgt agtacgcacg aagcgatcgt acgagatttc
     3961 aagcg
//
LOCUS       DATIMD010000075         3831 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5517758, whole genome shotgun sequence.
ACCESSION   DATIMD010000075 DATIMD010000000
VERSION     DATIMD010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3831
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5517758"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>3831)
                     /locus_tag="VLI40_01730"
     CDS             complement(<1..>3831)
                     /locus_tag="VLI40_01730"
                     /inference="COORDINATES: protein motif:HMM:NF016260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HSU95919.1"
                     /translation="FIATGRVSVRYDLRDLLDRRVLLHDVRAEHPVVYIRQHENGDWN
                     FREVFRESKPAKFQPKQSSPFIVIDSALVRNATFMLTLPWHPAPWLKHAALDSAIHVE
                     LTRKDHEIRRTAEGYARTWRWTGGDVDIPVARISNPDTAGMLFRFTGLKVTEADPPFL
                     FSNTEGVVTQLGDSVWLTLPRVNLPASTGRAKGKIVWGSDLPVRYDVHVHADSMSLND
                     IAWIYPTLPRTGSGSTDLDIRTEPKHLRLTDFALSNMDVRSTRSHLLGRMTFTTGADT
                     LIVSDVQLRAAPVNFDLLRTLNGKPFPYDWQGDITGTVRASGGNLARFRVEDSQLNFA
                     DAHVPGAVTVASGKGELNIFSPAFTEFHDFAVNVATLDLRTLQYLNRNFPRLNGTVSG
                     TAVLDSSWLDVRFSNAQLTHRDGDGPQSHVSGNGRVTWGDLYLTYDLDLQAQPLAFET
                     LHKSYVNLPLRESLSGPIRVQGQSPDLRFTTSLSGEGGTLAFDGRVDADPPDYGAHGT
                     GTISSANLRTLLGNESLPHTSLNGTYAIDVTGDSLPNFTGSASASLLDSKVGNTALLP
                     SSARVRFGDGLVTVDTMMLATGGTVAHAHGTIASTANRTGSLNFQVDLASLNDVRRLL
                     GDASLAAASAHSSVSSGPVTVRGTLSGAPSALQAQGTASARDVAAGPAHVRSLNASYA
                     MHDLGTKPSGVVALTADTLSAGPVPVNQATVGLRISNGTDAAFRADFVGTGSARASAS
                     GNVSRGDSGAVSFRVDSARVDVDSVNSYALGAPVHLESSARGVAVDSVILSRTRGGSV
                     AIRNIAFLGDSIRGSLRTEGLSLALLELFGSGVSNIRGGLTARVDVSGTTAHPHLDGS
                     IVVDSGAATVTAIGVRLDRLDANIALSGDTVFLRKLSATTSRERRGTLDVTGNVALSQ
                     YDDPVFALKATAHNFRAVDRRGLASLDVSTTSPIALTGPYSGATVSGAVRVDRGTVYI
                     PELITKRLVDLNDPELLDVVDTTVASNRAILPTAPSEFTKNLRLNNVSVSIGDDVWLR
                     SAEANIKLGGSLNVTLGRSPVTGERSQLALDGQLNTIRGTYRLDVVPFVQPTFDVEQG
                     TLRFFGTPDLDPALDITAINTVRKPAQSLNGQDIRIRATIGGTLSAPSLTLSSADNLP
                     LSQSDLLSYLITGEPAFALDYTSAQYVNQLANVAVRSAGNIISSAIPRSVFDVVELQT
                     PALLAPQAPGTADNATFYSNLLNTRALVGKQLNNNLFLNFSTGFCAENLRSAASFQRN
                     LGLRLEYRLSQSYTA"
BASE COUNT          744 a         1129 c         1258 g          700 t
ORIGIN      
        1 cgcggtgtaa ctctggctga gccggtactc gagacgcagt ccgagattcc gctggaagct
       61 cgcggcgcta cgcaaattct cggcgcagaa tccggtgctg aagttgagga agaggttgtt
      121 gttcagctgc ttcccgacga gtgcgcgagt gttgagaagg ttgctgtaga acgttgcgtt
      181 gtcagcggtg cccggtgcct gcggtgcaag aagggctgga gtctggagct cgacgacgtc
      241 gaacaccgac cgcggaatcg cgctgctgat gatgttgccc gcggaccgca cggccacgtt
      301 cgcaagctga ttgacgtatt gcgccgaggt gtagtcgagc gcgaacgcag gctcaccggt
      361 gatcaggtag ctgagaagat cggactggga cagcggcagg ttgtcggcgc tcgagagtgt
      421 gagcgacggc gccgagaggg tgccgccgat cgtggcacgg atccgaatgt cctggccgtt
      481 cagactctgt gcgggcttgc gcacggtatt gatcgcggtg atgtcgagcg ccggatcgag
      541 atccggagtg ccgaagaatc gcaacgtgcc ctgctccacg tcgaacgtgg gctgcacgaa
      601 cgggacaacg tcgaggcggt aggtgccgcg tatggtgttg agctgtccat ccagcgcgag
      661 ctgcgaccgc tcgccggtga ccggactcct gccgagtgtg acgttgagcg agccgccgag
      721 cttgatgttc gcttcggcgg atctcagcca gacatcgtcg ccgatgctga cggacacgtt
      781 gttcagacgc aggttcttgg tgaactcgct cggcgcggtc ggcagaatcg cacgattgct
      841 cgcgacggtc gtgtccacaa cgtcgagcag ctcgggatcg ttgagatcga cgagacgttt
      901 ggtgatgagc tcggggatgt acacggtgcc gcgatcgacc cggaccgcac cgctcacagt
      961 tgcaccggaa tagggaccgg tcagcgcgat cggagacgtg gtgctgacat cgagcgaagc
     1021 gagaccgcgc ctgtccaccg cgcggaagtt atgcgccgtt gccttgagcg caaagacagg
     1081 gtcgtcgtac tgcgagagtg cgacgttccc ggtgacgtcg agagttccgc ggcgctctct
     1141 cgacgtggtc gctgaaagtt tcctgagaaa gaccgtgtcg ccgctcagcg caatgttggc
     1201 gtcgagccgg tcgagacgga cgccgatcgc agtaacggtc gcggcgccgc tgtcgacgac
     1261 gatgctgcca tcgagatgag gatgagcggt ggtaccgctg acgtcgacgc gcgcggtgag
     1321 gccgccgcgg atgttgctga caccgcttcc aaacagttcg agcaacgcga ggctgagccc
     1381 ctccgtacgc aacgacccgc gaatcgaatc gccgaggaag gcgatgttcc ggatcgcgac
     1441 ggatccgccg cgcgtacgcg aaagaattac tgaatcgact gcaacgccgc gtgcgctgga
     1501 ctccagatgc accggcgcgc cgagcgcata ggaattgacc gagtcgacgt ccacgcgtgc
     1561 tgaatcgacc cggaagctca cggcgccgga atctccacgc gagacgttgc ccgatgctga
     1621 cgcgcgtgcc gagcccgtgc cgacgaagtc cgcgcgaaat gccgcgtcgg taccgttgct
     1681 gattcgcaga ccgacagtgg cctgattgac gggtacgggg ccggccgaaa gcgtatcggc
     1741 cgtgagcgct acgacgccgc tgggcttggt gccgaggtcg tgcatcgcgt aactggcgtt
     1801 aagactgcgt acgtgcgccg gaccagccgc tacatcgcgc gcggacgctg tgccctgcgc
     1861 ctgcaacgcc gatggcgccc cgctcagggt gcccctgacc gtgaccggtc ccgacgacac
     1921 actgctgtgg gcgcttgccg cggctaacga cgcatcaccc aacaggcgcc gaacgtcgtt
     1981 cagcgatgca agatcgacct gaaaattgag cgatccggtg cggttcgccg tggatgcgat
     2041 ggttccgtgt gcgtgcgcaa cggtgcctcc cgtcgcaagc atcattgtat cgaccgtaac
     2101 gagcccatca ccgaaccgca cccttgccga cgacggaagc agcgcggtat ttccaacttt
     2161 cgaatcgagc agcgatgcgg acgccgatcc ggtgaaattc ggcagtgaat caccagtgac
     2221 atcgatggca taagtcccgt tcagagacgt atgcggaagc gattcgttcc ccagcagagt
     2281 ccgtagattg gcgctcgaaa tggtgccggt accgtgcgcg ccgtaatcgg gtggatcggc
     2341 gtcgacgcgg ccgtcgaatg cgagcgttcc cccctcgccg gatagcgagg tggtgaaacg
     2401 caggtccgga ctctgaccct gcacgcgaat cgggccgctc agcgattcgc gcagaggaag
     2461 attgacgtac gacttgtgca gcgtttcgaa cgcgagcggc tgcgcctgca gatcgagatc
     2521 gtacgtgaga tacagatctc cccatgtgac acgtccgttg ccggacacat gcgattgtgg
     2581 accgtctcca tcccgatgcg tgagctgcgc gttgctgaaa cggacgtcga gccagctgga
     2641 gtccagcacg gcggtgccgg aaacagttcc gttgaggcgt ggaaaattcc tgttgagata
     2701 ctgcagggtc cgcaggtcga gtgtggcaac attcacggcg aaatcgtgaa attcagtgaa
     2761 cgccggcgag aagatattga gctcaccctt gccactcgcg acggtgactg caccgggcac
     2821 atgcgcgtcc gcgaagttga gttgcgagtc ttccacacgg aagcgtgcga gattgccacc
     2881 cgatgcacgt acggttcctg tgatgtcgcc ctgccagtca tacgggaacg gcttgccgtt
     2941 cagcgttcgc agcagatcga aattgaccgg cgcggctctg agctgcacat cgctcacgat
     3001 caacgtgtcg gcaccagtcg tgaaggtcat ccgcccgagc aggtgcgacc gcgtggaacg
     3061 tacatccatg ttgctcagcg cgaagtcggt gaggcgcaga tgcttcggct ccgtgcggat
     3121 atccaggtcg gtgctgccgg atcccgtccg cggaagcgtg ggatagatcc acgctatgtc
     3181 gttgagagac atcgagtcgg cgtgcacgtg aacgtcgtac ctgacgggga gatcgcttcc
     3241 ccagacgatc tttccctttg cccttccagt cgaagccgga agattgaccc gcgggagagt
     3301 gagccatacc gaatcaccga gctgcgttac cacgccttcc gtgttcgaaa acaggaaggg
     3361 cggatccgcc tcggtcacct tcaacccggt aaagcgaaag agcattccag cagtgtcggg
     3421 attgctgatt cgcgcaacag gtatgtcgac gtcgcctccg gtccagcgcc aggttcgagc
     3481 gtaaccctct gccgtgcgac ggatctcgtg atccttgcgc gtcagctcta catgaatggc
     3541 actgtccagc gcggcgtgtt tcaaccacgg cgcagggtgc cacggaagtg tgagcatgaa
     3601 cgtggcgttg cgaaccagcg cggaatcgat gacgatgaac ggactggact gcttcggctg
     3661 aaatttcgcc ggcttcgatt cgcgaaagac ctcgcgaaaa ttccaatcgc cgttctcatg
     3721 ctggcgtatg tacacaaccg gatgctccgc gcgtacgtcg tgcagcaaca cacgccgatc
     3781 caggagatcg cgaaggtcgt agcgcaccga aacccggccg gttgcaatga a
//
LOCUS       DATIMD010000076         7312 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4651878, whole genome shotgun sequence.
ACCESSION   DATIMD010000076 DATIMD010000000
VERSION     DATIMD010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7312
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4651878"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            111..1223
                     /locus_tag="VLI40_01735"
     CDS             111..1223
                     /locus_tag="VLI40_01735"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HSU95920.1"
                     /translation="MLSRMIRNAVTGGTCALSVLVPAPRTYHPPPVKHVFVIVLENEP
                     FETTFGADTPIPYLADSMTKAGAFLRQYYGTGHLSLDNYITMISGLAPNPATQADCGR
                     YVEFAETGMAPGGQPIGLGCVYPAHVQTIANQLSARHLKWRAYMEDMGNDTTREARTC
                     GHAVIGQRDPTERATPTDQYAAKHDPFVYFHSIIDDTVSCQHNVVPLTALEADLSSAR
                     ATPSYSFIAPSLCHDGHDRPCRNGEPGGLVSANEFLTHWVPIITRSPAFRDGGLLIVT
                     FDEAASADASACCNEPSGPNTNLPGAHGPGGGRIGAVLMSPFIKPGTVSDVPYNHYSM
                     LRSVEDIFGLKYLGYAGEKGLASFGPDVYGGTGSGR"
     gene            1314..2126
                     /locus_tag="VLI40_01740"
     CDS             1314..2126
                     /locus_tag="VLI40_01740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95921.1"
                     /translation="MNDKPRKDSRVATRRSDRLGIASRIPALRLLGAAALVAGVTATA
                     SAQGSGNGFLFEQPAGSLTLSGGYAHASAGSDIFSFTTNQLSVDKSDFSGLTLGADLA
                     IRVAPRFDIVLGTSYAGTSTPSSYRSLVDQNNQEIRQTTDFRRVPVMASVKAYLTDRG
                     RTVGRFAWVPSRFAPYVGVGGGAVWYKFRQHGDFVDANDNSVFTADLNSSNWAPAAQG
                     LAGLDFTLTPHLALTGEAKYIWAHGKLSDSFSGFDNIDLSGLSTTIGLTFRY"
     gene            2138..3493
                     /locus_tag="VLI40_01745"
     CDS             2138..3493
                     /locus_tag="VLI40_01745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95922.1"
                     /translation="MRSHKYVIKHTQLATAFAAVALIMGAPSAGWAQQASPAAQTAQL
                     DARWQPWIGCWRPAAPPSADGVSYSTTPRSSDAPLVCVVPASGAAASSSVNVLTVKDG
                     KIVSRDTIVATGSSVARSKDGCNGTESAKWSADGHRLYVTSVFTCPGGLTRTSSGLFA
                     MSPQDEWVNVQSVTASGRNAVRTLRYSDAGVPSTLPSEVSDALANQKLAVSTARAAAG
                     ERLSTAAVIDASHNVDSSAVAAWLIDRGQGFGVDAKQLVALSDAGLPGNVTDAMVALS
                     YPKAFALNHPENMEEGGAGEDVAGAELERAKAPNVAVIMAPAYAPFSYAPFGFSPYDY
                     YGYGYSPYGYSPYGYSPYGYSPYGAYYSPYSGYAARYGGWYYPPVIVLKGGEAGTPQQ
                     RGYAVKGKGYTRTAPQNGSSTAQPRPTVSSPSSGRADSPPPPPPPSQPASSGRTAHQR
                     P"
     gene            complement(3634..4092)
                     /locus_tag="VLI40_01750"
     CDS             complement(3634..4092)
                     /locus_tag="VLI40_01750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95923.1"
                     /translation="MDTVILITDQPLQLTRKRLTDDPELAPDAAIVGTYLGDALLTRA
                     VADPDWTAESDMGLLDQPRQLHYQASEIEGGTIRAELSAIIPAADIPREPWQPEPEDD
                     APPLIFPLGVVVRIAADRTGAELEVECFIHFQAILSGAGEPVADRILKNL"
     gene            4366..4611
                     /locus_tag="VLI40_01755"
     CDS             4366..4611
                     /locus_tag="VLI40_01755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95924.1"
                     /translation="MSASNQQGKQSPERQIVDETGTAWRVTEMRVWDANGKPANSLIA
                     AHERGFRRLWHFPENWADLADLQLAELVSKPVRKTAP"
     gene            4942..7062
                     /gene="fusA"
                     /locus_tag="VLI40_01760"
     CDS             4942..7062
                     /gene="fusA"
                     /locus_tag="VLI40_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HSU95925.1"
                     /translation="MARHTPLEHYRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVH
                     EGTATMDWMEQEQERGITITSAATTAFWRRHGQSDEQGSGPEYRINIIDTPGHVDFTV
                     EVERSLRVLDGAVTLLDSVAGVEPQTETVWRQGDRYGVPRLIFANKMDRTGADFERCM
                     RMIRDRLSKESYPIQLPVGSGDTFTGHIDVIERKQYIFDDESLGKKFAVVDVPEQFKA
                     AVEEARHAVLEAAVSHDESVLEKYLDGAELTNDEIRHAIRVATIGGHIVPVLCGASFK
                     NKGVQALLDAVIDFMPSPLDVPPVEGHIPDHNELVETREVSDDAPFAGLAFKIATDPF
                     VGKLTFFRVYSGVLQSGSYVYNATKGKRERIGRLLQMHSNKREEIEEVHCGDIAAAIG
                     LRDTRTGDTLTMEEQPIVLEAMKFPAPVIDVAIEPKTKADQDKLAIALQKLAEEDPTF
                     RVHSDPETNQTIISGMGELHLEIIVDRMQREFKVDANIGRPQVAYRETIKKRVDKVEG
                     KFIRQSGGKGQYGHVVINVMPAEQGQGFVFEDKIVGGVIPREFINPIEAGIKEALEGG
                     VIAGYPMVDVKVELVYGSYHDVDSSEMAFKIAGSMAVKDGARKAGAIILEPIMKVEVV
                     SPNDYMGDVLGDLSSRRGRIGGMNQRGEAQVIDAQVPLAEMFGYSTKLRSMSQGRAVY
                     SMEFSHYEEVPKAAAEEIMSKAKK"
     gene            7172..>7312
                     /locus_tag="VLI40_01765"
     CDS             7172..>7312
                     /locus_tag="VLI40_01765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003640798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HSU95926.1"
                     /translation="MAKAKFERTKPHVNVGTIGHVDHGKTTLTAAITTIQAAKGLASK
                     VAF"
BASE COUNT         1446 a         2197 c         2315 g         1354 t
ORIGIN      
        1 gtcatcggcc gctccgcttc ctgcctgttc gggcggagca gcgctcgcgt ggcgatcgcc
       61 gtaccttatg gatggaggca gtccgtccat aacgccgatc ccgattcgcg atgctcagcc
      121 gcatgattcg caatgccgtt accggtggta cgtgcgcgtt gtcagtactt gttccggcgc
      181 cacgcacgta ccatccgccc ccggtcaagc acgttttcgt catcgttctc gaaaacgagc
      241 cattcgagac gacgttcggc gcggacaccc cgatcccgta cctggccgac agcatgacga
      301 aggccggcgc ttttctccgg caatattacg gaacggggca cctcagcctc gacaactaca
      361 tcaccatgat ctccggtctg gcgccgaatc cggcgacaca ggccgactgc ggccgctatg
      421 tcgaatttgc agagaccggc atggcgccag gcggccagcc catcggactc ggctgcgtct
      481 atcccgcaca cgttcagacg atcgcgaatc aactgtccgc gcgacacctg aagtggaggg
      541 cgtacatgga agacatgggc aacgacacga cgcgcgaggc gcgcacgtgc ggtcacgccg
      601 tgatcgggca acgcgatcca accgagcgcg ccacgccaac ggatcagtac gctgcgaaac
      661 acgatccgtt cgtgtacttc cattcgatca tcgatgatac ggtgtcatgt cagcacaatg
      721 tcgttccgct gaccgcgctg gaagcggatc taagctccgc aagagcgacg ccgagctaca
      781 gcttcatcgc gccaagtctc tgtcacgacg gacacgatcg cccatgcagg aacggtgagc
      841 cgggcggcct ggtttcggcc aatgagtttc tgacacactg ggtgccgatc atcacccgct
      901 caccagcatt ccgcgacggt ggattgctca tcgtgacgtt cgacgaggca gcgagcgcgg
      961 atgcgtccgc gtgctgcaac gagccttcgg ggccgaacac caatcttcca ggcgcgcacg
     1021 ggcccggggg cggtcgaatc ggcgcggtgt tgatgtcgcc gttcatcaag ccaggcacgg
     1081 tatcagatgt gccctacaac cattactcga tgctgcgaag cgtcgaggac atattcggat
     1141 tgaagtacct gggctatgct ggcgaaaagg ggctggcgag cttcggcccg gacgtctacg
     1201 gcggtaccgg gtccggcagg taatcacagg taatcatttg taacgagccg cggaccgtcc
     1261 tgtccaacag ggtgtaccat tggctcacac accactatca accggagacg gcggtgaacg
     1321 acaagccacg aaaggattcg cgcgtggcga cccgacggag tgaccgactc ggaatcgcca
     1381 gcagaatccc cgctttacgc ctgctcggtg ctgcggcgct ggtcgcgggc gttacagcga
     1441 cagcaagcgc gcagggatct ggcaacggtt tcctgttcga gcagccggcc ggtagcctca
     1501 cactcagcgg cggctacgcg cacgccagtg cgggtagcga tatcttctcg ttcacaacca
     1561 accagttgtc ggtcgacaag agcgatttca gcgggttgac cctcggcgct gacctcgcaa
     1621 tacgcgtcgc cccgcgcttc gacatcgtac ttggcacctc gtacgccggc acgtcgacgc
     1681 cgtcgagcta tcgcagtctg gtcgatcaga acaaccagga gatcaggcag accacagatt
     1741 tccggcgcgt ccccgtcatg gcgagcgtca aggcttatct gacggaccgc ggacggacgg
     1801 tcgggcgatt cgcgtgggta ccgtcacgct tcgctccgta cgtgggagtc ggcggcggtg
     1861 cggtatggta caagttccgt cagcacggcg acttcgttga cgcgaacgac aatagcgttt
     1921 tcacggccga cctcaactcg tccaactggg cgccggcggc gcagggactc gccggtctcg
     1981 attttaccct cacgccacac ctcgcgctca cgggtgaagc gaagtacatc tgggcacacg
     2041 gcaagttgag cgacagcttt tcgggcttcg acaatatcga cctctccggt ctgtcgacca
     2101 cgatcggctt aaccttcagg tactgacagg agcgcacatg cgcagtcaca agtacgttat
     2161 caaacacacg cagctcgcca cggcgttcgc tgctgtagcg ctcatcatgg gtgctccgtc
     2221 agcaggttgg gcgcagcagg cgtcgccggc tgcccagacc gcgcagctcg atgcgcgctg
     2281 gcagccgtgg attggttgct ggcgtcccgc ggctcctccg tcagccgatg gcgtctcata
     2341 ctcgactacg cccagaagca gcgacgctcc gctggtgtgc gttgttccag cgagcggagc
     2401 ggctgcatcg tcgagcgtca acgtcctcac cgtgaaggat ggcaagatcg tttcgcgcga
     2461 cactattgtt gctaccggca gcagtgttgc ccgcagcaag gatggctgca acggaaccga
     2521 gagcgcgaag tggtctgcgg acggtcaccg tctgtacgtc acctctgtct tcacctgccc
     2581 cggtgggttg acgcgcacat catcgggtct gtttgcgatg tcaccgcagg acgagtgggt
     2641 gaacgttcag agtgtgaccg cgagcggcag gaatgcagtt cgcacgctgc gctacagcga
     2701 tgcaggtgtg ccgagcacgc taccgtccga ggtatcggac gcgctggcga atcagaagct
     2761 tgccgtgagc accgcacgcg cggccgctgg tgagcgactg tccaccgcag cagtaatcga
     2821 cgcatcgcac aacgttgact cgtcggcggt ggccgcgtgg ctgatcgatc gcggtcaggg
     2881 cttcggcgtc gatgcgaagc agctggtcgc gctgtcggat gctggattgc ccggcaacgt
     2941 caccgatgcg atggtcgcat tgtcatatcc caaggcgttc gcgctcaacc atccggagaa
     3001 catggaagag ggcggcgcgg gtgaagatgt cgcaggtgcc gagctggagc gcgccaaggc
     3061 tcccaacgtc gctgtaatca tggcgcccgc ttacgcgccg ttcagctacg cgccattcgg
     3121 attcagcccg tacgactact acgggtatgg ctactcgccc tacggctact cgccgtacgg
     3181 atattcgccc tacggatact cgccgtacgg ggcctactac tcgccctaca gcggatacgc
     3241 ggctcgttat ggcggctggt actatccacc tgtcatcgtc ctcaagggcg gagaggcagg
     3301 gacgccgcag cagcgcggct atgcagtaaa gggaaagggt tatacacgga ccgcgccgca
     3361 aaacggatcg tcgactgcgc aaccgcgtcc gaccgtgtcg tcaccgtcca gtggccgcgc
     3421 ggacagcccg ccgccgccac caccgccgtc gcagcccgcg tcttcgggtc gcaccgcgca
     3481 ccagcgccca tagacacttg aagaagattt agccccagtc gtcattccca aggcgcggat
     3541 tcatccgcgc cttgggaatt catgttatgg cagggttcgc gggaatgact atgtagttgt
     3601 tgcgtcgacc tgaacgtcga cctgaacgtc gacctacagg ttcttgagga ttcggtctgc
     3661 gaccggctca cccgcgcccg acagtatcgc ctgaaaatgg atgaagcact cgacttcgag
     3721 ctctgctccg gtgcgatccg ccgcgatccg aactacgacg ccgagcggga agatgagtgg
     3781 cggtgcgtcg tcctcgggct cgggctgcca cggctcccgc ggaatgtcgg cggccggaat
     3841 tatcgcactc agctctgcgc ggatcgtccc tccctcgatt tctgacgcct gatagtgcag
     3901 ctggcggggc tggtccagga ggcccatgtc ggattcggcg gtccagtcgg gatcggctac
     3961 agcacgggtc agcagggcat cgcccaggta ggttccaacg attgcggcgt cgggcgccag
     4021 ctcgggatca tccgtgaggc gcttcctggt gagctggagc ggctgatcgg tgatgaggat
     4081 tactgtatcc atggattgag tacgctcggt cataccggaa cgctatcggg aacgatactg
     4141 tgaatgctgt gggagaggcg gccgtttctg caaggcgggc gcaatgcagc tacggcgcag
     4201 ctgcgacgta cctgcgacgt acctgcgagg ctccggaagg gcagactgga catgatggga
     4261 ttttacgtgc cgccggcttg tgctacatcg ggtggttcga tcgtctctgg tacacatggc
     4321 ggtcgtagac ttgtggacag tcttctggag acattgaata ccacgatgag cgctagtaat
     4381 cagcagggca agcagtcacc tgagcgccag attgttgatg agaccggcac agcctggcgc
     4441 gttacagaga tgcgggtctg ggacgcgaat gggaaaccag cgaactcgtt gattgctgcc
     4501 cacgagcgcg gattccgcag gttgtggcac ttccccgaga actgggccga tctggcggac
     4561 ctgcagcttg cggagctggt cagcaagccg gttagaaaga cggcaccgta aggggtacat
     4621 aagggccacg gcagggcccc ggcagacggc acggcaggcg gtatggatcg cgacggcgga
     4681 ctcttgagtc cgccgttgtt tcaggtggga tcgtaccccg cgtttcgtgc tccggggccg
     4741 ttgacttggc ggatacttgc ggtataatta agggctacac tgaaaaccaa tcgccggcca
     4801 atgccggcgc gcctcgagtc cccagctgcg caccaacggc ggctgcaccc ggcggcggcg
     4861 gatggatacc ggtcccagat gggacgcccg gtccacccgc gtttttgttg ctctttgacg
     4921 atttgactcg ctgatataga tatggcccgc cacactccgc tcgaacatta tcgcaacatc
     4981 ggcatcatgg cccacattga tgccggtaag acgaccacga ccgagcgcat cctttattac
     5041 accggtaagt cgcacaaaat cggtgaagtc catgaaggca ctgccaccat ggactggatg
     5101 gagcaggagc aggagcgcgg catcacgatc acgtccgccg cgaccaccgc tttctggcgc
     5161 cgtcacggtc agagcgatga gcaggggagc gggcccgagt accgtatcaa catcatcgat
     5221 actcccgggc acgtcgattt caccgttgaa gtagagcgct cactgcgcgt actcgacggt
     5281 gccgtcacgc tcctggattc ggtcgccggt gtcgagccgc agaccgagac cgtgtggcgt
     5341 cagggcgatc gctatggcgt tccacgcctg atcttcgcca acaagatgga tcgcaccggc
     5401 gctgatttcg agcgctgcat gcgcatgatc cgcgatcgtc tctcgaagga gtcgtacccg
     5461 atccagcttc cagtcggctc gggcgatacg ttcaccggcc acatcgacgt catcgagcgc
     5521 aagcagtaca tcttcgatga cgagtcactg ggcaagaagt tcgcggttgt cgacgtccct
     5581 gagcagttca aggcagccgt cgaagaggct cgccatgcag tgctcgaagc ggccgtatcg
     5641 cacgacgagt ccgtgctcga gaagtatctc gacggcgcgg agctgaccaa cgacgagatc
     5701 cgtcacgcga ttcgcgtcgc gacgatcggc ggccacatcg ttccagtgtt gtgtggcgcg
     5761 tcgttcaaga acaagggcgt tcaggcgctg ctcgatgcag tcatcgactt catgccgtcg
     5821 ccgctcgacg ttccacctgt cgaaggccac attcccgacc acaacgagct ggtcgagacg
     5881 cgtgaggtct ccgacgatgc gccgttcgca ggtctcgcgt tcaagatcgc aacggatccg
     5941 ttcgtcggta agctgacgtt cttccgcgtg tactccggcg tgctgcagag cggctcgtac
     6001 gtgtacaacg cgaccaaggg caagcgcgag cgcatcggcc gtctgttgca gatgcactcg
     6061 aacaagcgcg aggagatcga ggaagtgcat tgcggcgaca tcgccgctgc catcggcctt
     6121 cgcgacacgc gcactggcga cacgctgacg atggaagagc agccgatcgt tctggaagcg
     6181 atgaagttcc cggcgccggt catcgacgtc gcgatcgagc ccaagaccaa ggcagatcag
     6241 gacaagctcg cgatcgcgtt gcagaagctt gctgaagaag atccgacgtt ccgcgttcac
     6301 tccgatccgg agacgaacca gacgatcatc tccggcatgg gcgagctgca cctggagatc
     6361 atcgtcgatc gcatgcagcg tgagttcaag gtcgatgcaa atatcggccg tccgcaggtt
     6421 gcgtatcgcg agacgatcaa gaagcgcgtc gacaaggtcg agggaaagtt cattcgtcag
     6481 tcgggcggca agggccagta cggccacgtc gtgatcaacg tgatgcccgc cgagcagggt
     6541 cagggcttcg tgttcgagga caagatcgtc ggcggtgtga ttccgcgcga gttcatcaac
     6601 ccgatcgagg ccggtatcaa ggaagcgctc gagggtggtg tcatcgccgg ttatccgatg
     6661 gtggacgtga aggtcgagct ggtctacggc tcgtaccacg acgtcgattc gagcgaaatg
     6721 gcgttcaaga ttgcaggatc gatggcggtg aaggacggcg cacgcaaggc gggcgcaatc
     6781 atcctcgagc cgatcatgaa ggtcgaagtt gtttcgccga acgattacat gggcgatgtg
     6841 ctcggcgatc tttcgtcgcg tcgcggtcgc atcggtggaa tgaatcagcg tggtgaagcg
     6901 caggtgatcg atgcgcaggt gccactcgcg gagatgtttg gttattcaac caagctgcgc
     6961 tccatgtcac agggtcgcgc ggtttattcg atggaattca gtcattacga ggaagtcccg
     7021 aaggccgccg ccgaagaaat catgagcaag gcgaagaaat agggtagggg cgacgcatgc
     7081 gtcgcccgta cggacgatag atgtggatga tgatgttggg gcgggtgcat cccacccgaa
     7141 taaacgaacc gaataaagga aagagcgaat aatggcgaag gcgaaatttg agcggacgaa
     7201 gccgcacgta aacgttggca cgatcgggca tgtggatcac ggcaagacga cgctgacggc
     7261 ggcgatcacg accatccagg cggccaaggg tctggcctcc aaggtcgcct tc
//
LOCUS       DATIMD010000077         3216 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4651951, whole genome shotgun sequence.
ACCESSION   DATIMD010000077 DATIMD010000000
VERSION     DATIMD010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3216
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4651951"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..805)
                     /locus_tag="VLI40_01770"
     CDS             complement(<1..805)
                     /locus_tag="VLI40_01770"
                     /inference="COORDINATES: protein motif:HMM:NF017081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MASE1 domain-containing protein"
                     /protein_id="HSU95927.1"
                     /translation="MTESRESRIGGRARAVLIAALAALGYYCGARLGYRFAISGGEVM
                     LWPASGVMLGLMLSSERRDWPAIITGGLIGSIVSDTQSHYGVVFVLGAAAANVGETLA
                     AASLVSWRLRSRMTLSSLREIGVLIFGAVILSNAVTAILGALAMHQRFHTPLLHAWFF
                     WWIGDGLGMLIVAPVVIAGVLATKRPRFKSRSAAEAVLVFAALAVRSQITLGPEHSWA
                     TGLGPFATFPLLLWAGLRFGPSGAAGATLVVAAIATWNAALHLGPFADAS"
     gene            1052..2464
                     /gene="cysS"
                     /locus_tag="VLI40_01775"
     CDS             1052..2464
                     /gene="cysS"
                     /locus_tag="VLI40_01775"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HSU95928.1"
                     /translation="MPQVRLYNTMTQSVEPFAPADGQVVRMYTCGPTVYNPAHVGNFR
                     TFLFEDLMRRVLRLAGWQVDQVMNLTDVDDKIIRRASEAGVTIGEITGPVTERFHADR
                     HYLRIEDAERYPRATESIPEMIALVERLVERGVAYQADDGSVYFAIDKFPAYGKLSRL
                     DKREIQSGARVAQDDYAKENAQDFALWKAAKPEDEASGAAWDSPWGRGRPGWHLECSA
                     MAMRFLGETLDIHCGGIDLVFPHHEDEIAQSEAATGHEFSRFWCHGQFLLTDGAKMAK
                     RVGNVSTVEDMRKQGVSGAAFRHFVFSTHYRKQLNLSPDALAASLEGVRRVGDFAERL
                     EAATGGTPELAAAAGDLEREARAALFDDLNAPEAMGALFSFIRRANAELDRSGTDVAA
                     LKRAREAFALVNGVLDIVPERVESDAELSAYVESRLADRRAARARRDFAASDAIRDEL
                     TSRGIAIEDGPQGTRWKKLL"
     gene            2522..2594
                     /locus_tag="VLI40_01780"
     tRNA            2522..2594
                     /locus_tag="VLI40_01780"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2555..2557,aa:Thr,seq:tgt)
     gene            2646..2728
                     /locus_tag="VLI40_01785"
     tRNA            2646..2728
                     /locus_tag="VLI40_01785"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2680..2682,aa:Tyr,seq:gta)
     gene            2744..2816
                     /locus_tag="VLI40_01790"
     tRNA            2744..2816
                     /locus_tag="VLI40_01790"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2777..2779,aa:Gly,seq:tcc)
     gene            2885..2957
                     /locus_tag="VLI40_01795"
     tRNA            2885..2957
                     /locus_tag="VLI40_01795"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2918..2920,aa:Thr,seq:ggt)
     gene            3076..>3216
                     /locus_tag="VLI40_01800"
     CDS             3076..>3216
                     /locus_tag="VLI40_01800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003640798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HSU95929.1"
                     /translation="MAKAKFERTKPHVNVGTIGHVDHGKTTLTAAITTIQAAKGLASK
                     VAF"
BASE COUNT          642 a          960 c         1055 g          559 t
ORIGIN      
        1 atgacgcgtc ggcgaacgga cccagatgca gcgctgcgtt ccacgttgcg atcgccgcaa
       61 cgacgagcgt tgcgcctgct gctcccgacg gcccaaagcg caggccagcc cagaggagca
      121 gtggaaacgt ggcgaatggt ccaagcccgg ttgcccacga gtgttcggga ccgagtgtga
      181 tctgcgatct caccgccagc gcggcaaaca caagcaccgc ctcggctgcg gatcgacttt
      241 tgaatcgcgg gcgtttcgtg gccagaaccc cggcaatcac cactggcgcc actatcagca
      301 ttccaaggcc gtcgcctatc caccagaaga accatgcgtg cagcaacggc gtgtggaatc
      361 gctgatgcat ggctaacgcg ccaagaatcg cggttacggc gttgctgaga atgacggcgc
      421 cgaagatgag gacgccaatc tcgcgaagac tcgagagcgt catgcgactc cgaaggcgcc
      481 agctaaccag ggaagccgca gcgagggtct cgccaacatt ggctgcagcg gcgccaagca
      541 cgaacaccac gccatagtgc gattgcgtgt ccgacacgat gcttccgatg agcccgccgg
      601 tgatgattgc gggccagtca cgacgctcgc tcgagagcat cagcccgagc atcacaccgc
      661 tggcgggcca caacatgact tcgccaccgg aaatcgcaaa gcggtagccg aggcgcgcgc
      721 cacagtagta gcccagcgcg gcgagcgccg cgatgagtac tgcacgagcg cggcccccga
      781 tccttgattc tctagattcc gtcaaagccc tgctgttgaa acgtgcttat tcgactgtcc
      841 acaatcacga gatcaccgca gcactccgta ctggtggcag ccctgcagcg aatcgctggc
      901 ctgggcggcg cgcggaaacc acggcatgaa tcggggcgag caccggtgcg ctcgtactgt
      961 ttgccgcggg cactccgatc cagcttgctt gacgggtaag ggcaccgttc gcaacatcgc
     1021 ggtccctggc ggggacactt acctttgtac gatgccacag gttcgtctct acaacacgat
     1081 gacgcagtcg gtcgagccat tcgcccccgc ggacggtcag gtcgtgcgca tgtatacctg
     1141 cggcccgaca gtgtacaatc cggcgcacgt cgggaacttc cggacgtttc tgttcgaaga
     1201 cctcatgcgc cgcgtgctcc ggctcgctgg ctggcaggtc gatcaggtga tgaacctcac
     1261 cgacgtcgac gacaagatca ttcgccgcgc atcggaggct ggcgtcacga tcggcgaaat
     1321 caccggtccc gtcacggagc gctttcatgc cgatcgtcat tacctgagga tcgaggacgc
     1381 ggagcgctat ccccgcgcga ccgagagcat tcccgagatg atcgcgctgg tggagcggct
     1441 ggtcgagcgc ggagtcgcgt accaggccga cgatggatcg gtgtatttcg cgatcgacaa
     1501 gttcccggcg tacggaaagt tgtcccgact cgacaagcgc gagattcaga gcggagcgcg
     1561 tgtggcacag gacgactatg ccaaggaaaa cgcgcaggac ttcgcgctct ggaaggcagc
     1621 gaagcccgag gacgaggcat ccggcgccgc gtgggattca ccctggggcc gcgggcgtcc
     1681 cggctggcac ctcgagtgct ctgcgatggc aatgcggttc ctcggcgaga ctctggatat
     1741 tcattgcggc ggaatcgatc tcgtgttccc gcaccacgag gacgagatcg cccagtcgga
     1801 ggcggcgacc ggccatgaat tttcgcgctt ctggtgtcat ggccagtttc tgctcaccga
     1861 cggcgccaag atggccaagc gagtcgggaa cgtctcgacg gtcgaggaca tgcggaagca
     1921 gggggtatcg ggtgccgcgt tcaggcattt cgtgttctcg acgcactacc gcaagcagct
     1981 caacctgtcg ccagacgcgc tcgcagcatc gctcgaaggg gtccgccggg tcggcgattt
     2041 cgccgagcga ctggaagctg caacgggcgg gactccggag ctggcagccg cggcgggcga
     2101 tctggaacgt gaggccagag ccgcgttgtt cgacgatctc aacgcgccgg aagcgatggg
     2161 cgctctcttc agtttcatca ggcgcgcgaa tgcggagctg gacagatcgg ggacggacgt
     2221 cgccgcgctc aaacgtgcca gggaagcgtt cgcgctggtg aacggagttc tggacatcgt
     2281 tcccgagcgc gtggagagcg acgcggagct gtccgcctac gtcgaaagcc gtctcgcgga
     2341 ccgtcgagct gcccgggcca ggcgcgattt cgctgcaagc gacgcgattc gggatgagct
     2401 gacgagtcgg ggaatcgcga tcgaggacgg accgcagggt actcgttgga aaaagctgtt
     2461 gtaggcgttg actcttgcca tggaaacagg gtatttttcc aggcttgcgt ggaaacgcgt
     2521 tgctgacgta gctcaattgg cggagcagtc gatttgtaat cgacaggtta ccggttcgat
     2581 tccggtcgtc agctctgcgg gtaagagggg gttacatgcg gcaggcggtg gtcgcgcagg
     2641 tctcaggtgg ggtacccaag cggccaacgg gagcagactg taaatctgcc ggctaacgcc
     2701 ttcgaaggtt cgaatccttc ccccaccact gtgcagcaat gttgcgggag tagctcagtt
     2761 ggtagagcgc tagccttcca agcttgatgt cgcgggttcg agtcccgtct cccgcttgaa
     2821 gggcaggcac ggcgcctgcc cgtacgaagt gccggaggcg tatcgccggc aagcaggacg
     2881 aagcgctcgt gtagctcagt tggtagagca cacccttggt aagggtgagg tcaccggttc
     2941 aatcccggtc gcgagctttc ggttttacgt ggattttgta ggggcaggcc tccgtgcctg
     3001 cccgcagtac gacgacgaga cgtttcaagt aacgaaccga ataaacgaac cgaataaagg
     3061 gaaccaaggg acatcatggc gaaggcgaaa tttgagcgga cgaagccgca cgtaaacgtt
     3121 ggcacgatcg ggcatgtgga tcacggcaag acgacgctga cggcggcgat cacgaccatc
     3181 caggcggcca agggtctggc ctccaaggtc gccttc
//
LOCUS       DATIMD010000078         2890 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1474937, whole genome shotgun sequence.
ACCESSION   DATIMD010000078 DATIMD010000000
VERSION     DATIMD010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1474937"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(85..>2890)
                     /gene="secA"
                     /locus_tag="VLI40_01805"
     CDS             complement(85..>2890)
                     /gene="secA"
                     /locus_tag="VLI40_01805"
                     /inference="COORDINATES: protein motif:HMM:NF009538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HSU95930.1"
                     /translation="GKTLVATLPLYLNALAGRGAHLITVNSYLARRDSQWMGHLYKYL
                     GLTVGCLDDTEPGSYERRAVYECDITYGTNNEFGFDYLRDNMVVSLDQRVQRTHAYAI
                     VDEVDSVLIDEARTPLIISGPVGNEVDEEYARHNPAVARLVRMQSELANTLTADGERA
                     LREGDTETAATLLYKARLGAPKNKRLLKLLNEPGVKQLVQNMELKHIADRRLTASRQE
                     MRDIEEDLLFVLDEKGQAVHLTDRGIDFLSPNDREQFILPDISQQVHLIDHDPEMNPA
                     EKIEARNKINAEYAAKSEKLHIIHQLLRAHSLYEMDVNYVVQDGEVLIVDEFTGRTMP
                     GRRWSEGLHQAVEAKEGVSVKGETQTLATITIQNYFRMYDKLSGMTGTAETEESEFHQ
                     IYKLGVAVIPTNRPIVRDDRNDLVFKTRREKYNAIAEETQRLHELGFPVLVGTVNVDV
                     SETLSKLFKRAGIPHNVLNAKYHQREAEIVAEAGQPGAVTIATNMAGRGTDIKLGEGV
                     TTAKPSKVKDAEGNIVDVMEDGGLHIIGSERHESRRIDRQLRGRAGRQGDPGASQFFL
                     SLEDDLMRLFGSDRIAKLMDAMGAKEGEVLTHSLITRSIEQAQKRVELQNFQSRKRLL
                     EYDDVMNQQREVVYSLRSFALEGGEELRGEAERMIEKAVGKRVETALAETAEDGAFDI
                     ELLRQELMQNYMLTVPEFEVAGEWPTTIPAARQAAVTAAIAAFEAKMRGLNEFASRLL
                     SLVMLNVLDEKWKDHLYDLDQLRNAIHYRSWGQQDPLVEYKQEAYTMFVDLMQDMQHT
                     FTERFARAQIVFEGGPQGGNGGQPAPAPAPRPTRHYNALGILEDIADDTPEPKGTDED
                     MDIGPAETPTQEVATTRADPAVVGLGRQKSLTPQAPAGVPGVSGGAPAGADWTNVKRN
                     DPCPCGSGKKFKKCHGAVMA"
BASE COUNT          490 a          932 c          852 g          616 t
ORIGIN      
        1 gttgtttcaa tgcgacgtgt cccgacggca ttcgccacgc accgaatggc gttcgtcggc
       61 ggtgacggcg tgacgtcggc gacgttacgc cattacggcc ccgtggcatt tcttgaattt
      121 cttgcctgaa ccgcacggac acggatcgtt acgcttgacg ttggtccagt ctgcgccagc
      181 aggggcaccg ccggagacac ctggaacacc agcgggcgcc tgtggcgtca gcgacttctg
      241 gcgacccagc ccgacgaccg ccggatcggc gcgcgtggtc gcgacttcct gcgtcggagt
      301 ttccgcaggt ccgatgtcca tgtcctcatc ggtgcctttc ggctcgggcg tatcgtccgc
      361 gatgtcttcg aggatcccga gcgcgttgta gtgcctggtc gggcgcggtg cgggcgctgg
      421 cgctggttgg ccaccgttgc cgccttgcgg cccgccttcg aagacgatct gcgcacgcgc
      481 gaagcgctcg gtgaacgtgt gctgcatgtc ctgcatcagg tccacgaaca tcgtgtacgc
      541 ttcctgcttg tactcgacga ggggatcctg ctggccccac gagcggtagt ggatcgcgtt
      601 acgcagctga tcgagatcgt agagatggtc cttccacttc tcgtccagca cgttcaacat
      661 cacgagcgac aacaaccgcg acgcgaactc gttgagccca cgcatcttcg cctcgaacgc
      721 ggcgatcgct gcagtcaccg ccgcctgacg cgcagcggga atcgtcgtcg gccactcccc
      781 ggctacctcg aattccggaa ccgtcaacat gtagttctgc atcagctcct gacgcagaag
      841 ctcgatgtcg aacgcgccat cctcggcggt ctccgcgagc gccgtctcga cacgcttccc
      901 aaccgccttc tcgatcatgc gctcggcttc gccacgcagc tcctctccac cctcgagcgc
      961 gaacgagcgc agcgagtaaa ctacctcgcg ctgctgattc atcacgtcgt cgtattcgag
     1021 cagacgcttg cgggactgga agttctgcag ctcgacgcgc ttctgcgcct gctcgattga
     1081 ccgtgtgatg agcgagtgtg tgaggacttc gccctccttc gcccccatcg cgtccatcaa
     1141 cttcgcgata cgatccgatc cgaagagacg catgaggtcg tcttcgagcg acaggaagaa
     1201 ctgcgacgca ccgggatcac cctgacgtcc cgcacgaccg cgcaactgcc ggtcgatgcg
     1261 ccgcgactcg tgccgctccg atccgattat gtgaagtccg ccgtcttcca tcacatcgac
     1321 gatatttccc tcggcgtcct tcaccttgga cggcttggcg gtcgttacgc cttcaccaag
     1381 cttgatgtcc gttccgcggc cggccatgtt ggtcgcgatc gtgaccgcgc ccggctgacc
     1441 cgcttcagca acgatttccg cctcacgctg gtgatacttc gcgttgagca cattgtgcgg
     1501 aatacccgca cgcttgaaca gtttcgacag tgtttccgag acatcgacgt tcaccgttcc
     1561 aacgagcacc gggaagccga gctcgtgcag ccgctgcgtc tcttcggcga tcgcgttgta
     1621 cttctcgcgc cgggtcttga agacgaggtc gttgcggtcg tcgcgcacga ttggacgatt
     1681 ggtcggaatt actgcgacac caagcttgta gatctgatgg aactcggact cttccgtctc
     1741 cgcggttcca gtcatgccgg agagcttgtc gtacatgcgg aagtagttct gaatcgtgat
     1801 cgtcgcgaga gtctgagtct cgcccttcac gctcacgcct tccttcgcct cgacagcctg
     1861 atgcagaccc tcggaccacc ggcggcccgg catggtgcgg ccggtgaact cgtcgacgat
     1921 gagaacctcg ccgtcctgca cgacgtaatt cacgtccatc tcgtacagcg aatgcgcgcg
     1981 cagcagctga tggattatgt gcagcttctc cgatttcgcc gcgtactcgg cgttgatctt
     2041 gttacgcgct tcgatcttct cagccggatt catctcggga tcatgatcga tgagatgtac
     2101 ctgctgcgag atgtccggca gaatgaactg ctcgcgatcg ttgggcgaga ggaagtcgat
     2161 tccgcgatcc gtgagatgga ccgcctgccc cttctcatcc aggacgaaga gcagatcttc
     2221 ctcgatgtcc cgcatttcct gacggctcgc cgtaaggcgc cgatccgcaa tgtgcttgag
     2281 ctccatgttc tggaccagct gcttgacgcc gggctcgttc agaagcttga gcagacgctt
     2341 gttcttggga gcgccaagcc gcgccttgta caacagcgtc gccgcggttt cggtgtcgcc
     2401 ctcgcgcagt gcgcgctcgc catccgcggt gagcgtgttc gccagctcgc tctgcatgcg
     2461 cacgagccgc gcaaccgcgg gattgtggcg cgcatattcc tcgtcgacct cgttgccgac
     2521 cggacccgat atgatgagcg gagtgcgcgc ctcatcgatg agtaccgaat ccacttcgtc
     2581 gacgatcgcg tatgcgtgag tgcgctgcac gcgctgatcc agcgacacga ccatgttgtc
     2641 gcgcagatag tcgaagccga actcgttgtt ggtgccgtac gtgatgtcgc actcgtaaac
     2701 cgcgcgacgc tcgtagctgc caggctcggt gtcatccaga cagccgacag tgagaccgag
     2761 atatttgtac aggtgaccca tccactgcga atcgcgacgg gccagatagg agttgacggt
     2821 gatgaggtgt gcgccgcgcc ctgcgagcgc attgagatac agcggcaacg ttgcgacgag
     2881 tgtcttgcct
//
LOCUS       DATIMD010000079         3568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4940019, whole genome shotgun sequence.
ACCESSION   DATIMD010000079 DATIMD010000000
VERSION     DATIMD010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3568
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4940019"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            128..1372
                     /locus_tag="VLI40_01810"
     CDS             128..1372
                     /locus_tag="VLI40_01810"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSU95931.1"
                     /translation="MNRVRILRVVSAGVVATFGTACSAAFHTPAVNTSVAIPATAERV
                     VAGLSPALPSHIDSIINAAIADHAAPAMAVAIGRYDNLIYLHSYGRLTYADTAPAVDE
                     HTRFDMASLTKVVATTTAAMMLEEQGKLDINRTVASYLPEFDAPDKKDITVRQLITHR
                     GGLEAFAPLWATLKGKQQFLAAINSRPLAYTPGTKSIYSDWDYVLMGFIVERITGQTL
                     DTYTAQHIFGPLGMSETGYRPDTVDKRHIAPTEIDTLRGLVWGKVHDENANAMGGVSG
                     HAGLFSTAHDMAIFARMLLNGGSVGSVRLLAPTTIARWTAAQDPGSSRALGWDTPAPH
                     SSAGRYFSPRSYGHTGFTGTSIWTDPQRGVWVVLLTNRVYPTRNNQKAGPLRRAISDA
                     VEEAVMDAPLINWEALHPAERP"
     gene            complement(1379..3469)
                     /locus_tag="VLI40_01815"
     CDS             complement(1379..3469)
                     /locus_tag="VLI40_01815"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSU95932.1"
                     /translation="MKDPTALHPALTLRWPRHIQDQVFVGLLTVLGAGFASRLSAQAT
                     PSDTLPAVHVTVLRTPFDVTRAPLDVASVGARDIAVARPGFSVDEALGQVAGIQVDNR
                     LNFAIGERLSVRGIGVRSQFGTRGVRVLVDDIPATLADGQSALNNIDMGSLGLAEAIR
                     GPASALYGNASAGVISFRTLPPPPVAFAPNARVMSGSDGLARFQLGVGGMKGRGSYVV
                     NADRLDYAGYRAYSHARNAHVNAVGTWDWDRVSLKLVGNGVQYSAENPGSLSDSLLNI
                     DRRQAYSNNLKQRTGERGRQNQLGASMRAQLGLGELRLSAYGLTRSINNPIPTSIIGI
                     HRAAGGVRAAYAVTEGNTDRNVTAMIGGESDLQRDDRRNWANRAGVAGALTLDQRERV
                     TSTSPFLQLSATAGKLTFLGGVRYDQFRFEAQDHLINANNPDDSGVRTMTSTSPTLGV
                     TYAVMPLLSLYANVSNGFQTPTTTELANRPSGAGGFNPTLRPEHTHSHEAGIKGRAGS
                     MSYDLAAYDMRIDDELIPFEVASAAGRQFYRNAGTARHRGIDASATALLGSSMQLHGT
                     YSFTDARYVSYDVASGTGTTSYASNRVPGVAPNLASLSLDVGNPDARFVSVEERYRSN
                     ILVNDANTASAPASVVTNLRGSIRVGAASLFGGVGNLFDEVYDTSVSINAFGGRYFDP
                     AAGRTFYVGVDLRR"
BASE COUNT          721 a         1084 c         1110 g          653 t
ORIGIN      
        1 cacggctaag cggcaaatgt atagaaatgc gcggtgaacg gtagcggcga tagcgcgaat
       61 agcacgaacg gagtcgcaca aggacgtgga atgtacgctc acaaactatt ctttaattag
      121 tgaaaccatg aaccgagtca ggattttacg cgtcgtatca gctggtgtcg ttgcgacatt
      181 tggtaccgcg tgcagtgcag cgtttcacac gccggcggtg aacacctcgg ttgcaattcc
      241 tgcaactgcc gaacgcgttg ttgccggcct gagtccagcg cttccgtcgc acatcgactc
      301 gatcataaac gcggcgattg ccgaccacgc agctcctgcg atggcggtgg cgatcggccg
      361 ctacgacaac ctcatctatc tccactcata cggccgcctg acatatgcgg acaccgcgcc
      421 tgcggtggac gagcacacgc gcttcgacat ggcgtcgctc accaaggtgg tggcaaccac
      481 cacagccgcg atgatgctcg aggaacaggg caagctcgac ataaacagaa ctgtcgcctc
      541 gtacctgccg gaattcgacg cgccggacaa gaaggacatc acggtgcgtc agctgataac
      601 gcatcgcggt ggattggaag cgttcgcgcc gttgtgggca acgttgaagg gtaagcagca
      661 gttcctcgcc gccatcaact cgcgcccact ggcgtataca cccggcacca agtcgatcta
      721 cagcgactgg gattatgtgt tgatgggatt catcgtcgag cgaatcaccg gccagactct
      781 cgacacatat accgcgcagc acatcttcgg accgctgggg atgagcgaga ccggctaccg
      841 tccggacacg gtcgacaaac gtcacattgc accaacggaa attgatacgt tgcgcggcct
      901 ggtgtggggc aaggtgcacg atgagaacgc gaacgcgatg ggcggcgttt caggccacgc
      961 gggcctgttc tccacggcgc acgacatggc gatcttcgca cgcatgctgt tgaatggcgg
     1021 gagtgtagga tctgtgcgtc tgctggctcc gaccaccatc gcacgatgga ccgccgcgca
     1081 ggatccgggt tccagtcgcg ccctgggatg ggatacgccc gctccgcatt cgagcgcggg
     1141 acgatatttc tcgccgcgca gctatggcca tacgggattt accggcactt ccatctggac
     1201 cgatccgcag cgtggtgtct gggtcgtgtt gctgacgaac cgcgtttacc cgacgcgcaa
     1261 caatcagaaa gccggaccgt tgcgccgcgc gatatcggac gcggtcgaag aggcggtgat
     1321 ggatgcgccg ctgatcaact gggaggcgct gcatcccgca gagcgtccct agtgaacctc
     1381 agcgacgaag atccacacca acgtagaagg tccttcccgc ggcgggatcg aagtagcggc
     1441 caccgaatgc gttgatcgac acggacgtat cgtacacctc gtcgaagagg ttcccgactc
     1501 ccccgaacag tgaagctgcg ccgacgcgta tcgagccacg cagattggtg acgacggaag
     1561 ccggcgccga ggcggtgttc gcatcgttga cgaggatgtt ggaccggtac cgctcttcga
     1621 ccgacacgaa gcgcgcgtcg ggattaccga cgtcgagcga cagcgaagcg aggttcggcg
     1681 ccacgcccgg aacgcgattg cttgcatatg acgtcgtgcc ggtgccggag gcgacgtcat
     1741 agctcacgta acgcgcgtcg gtgaacgagt acgtgccatg cagttgcatg ctggagccga
     1801 gcagcgcggt ggcactggca tcgatgccgc ggtgacgcgc ggtgccggca ttgcggtaga
     1861 actgacgccc cgcagccgac gccacctcga atggaatcag ctcatcgtcg attcgcatgt
     1921 cgtaagcggc aaggtcgtac gacatcgagc ccgcgcgacc cttgattccg gcttcgtgcg
     1981 aatgggtgtg ctccggccgg agtgtcggat tgaatccgcc ggcaccgctc ggccggttcg
     2041 caagctccgt tgtcgtcggc gtctggaaac catttgacac gtttgcgtag agcgacagca
     2101 acggcatcac cgcatacgtg acgccgagtg tcggactggt ggacgtcatt gtccgcacgc
     2161 cggaatcgtc cgggttgttc gcgttgatga gatgatcctg tgcctcgaac cgaaactgat
     2221 cgtatcgcac accgcccaga aaggtcaact tgcccgcagt cgcgctgagc tgaaggaagg
     2281 gagaggtgct cgtcacgcgc tcacgctggt ccagcgtcaa tgcgcccgcg acaccggccc
     2341 gattcgccca gttgcgtctg tcgtcgcgct gcaaatccga ctcgccacct atcatcgctg
     2401 taacattacg atccgtgttg ccttcggtca cggcgtacgc ggcgcgcacg ccacccgccg
     2461 ccctgtgaat gccgatgata ctcgtgggaa tcggattgtt tatggagcgc gtcaatccat
     2521 atgcggataa tcgaagctcg ccgaggccga gctgtgcgcg catgctggcg ccgagctgat
     2581 tctggcggcc gcgctcaccg gtgcgttgct tgagattatt ggagtaggcc tgacgtctgt
     2641 cgatgttcag cagcgagtcc gaaaggcttc ccggattctc tgcagagtac tgaacgccat
     2701 tgccgacaag cttgagggag actcgatccc aatcccacgt tccgactgcg ttgacatgag
     2761 cgttgcgcgc atggctgtac gcgcggtagc cggcatagtc cagtctgtca gcattcacca
     2821 catagcttcc tcttcccttc atgccgccga ctccgagctg gaatcgcgcc agtccatcgc
     2881 tgccggacat gacgcgcgcg tttggtgcga acgcgactgg cggcggtggc aaagtgcgaa
     2941 acgagatcac gccagcagat gcgttgccat acagcgcgga cgccggccca cgaatcgcct
     3001 cggcgagacc gagcgagccc atgtcgatgt tattgagtgc cgactggcca tcggcgagcg
     3061 tcgctggaat gtcgtcgacc agcacgcgca ctccgcgcgt cccgaattgc gagcgtacac
     3121 cgatcccgcg caccgagagt cgttcgccaa ttgcgaaatt cagccggttg tcgacctgaa
     3181 ttccggccac ctggccaaga gcttcatcca cggaaaatcc ggggcgagca acagcgatgt
     3241 cacgggcacc aaccgacgca acgtccagcg gggccctggt aacgtcgaac ggcgttcgaa
     3301 gaacggtgac gtgtaccgcg ggcaaggtat ccgaaggcgt agcctgcgca gacaggcgcg
     3361 acgcgaagcc ggcgccgagt actgtcaaca gaccgacgaa gacctggtcc tgaatatgcc
     3421 tgggccaacg cagggtgagc gctgggtgga gcgctgttgg gtctttcatg tgatgaaagt
     3481 tggcgccgga gcgcgaatct acaactctgc tgggacgaac gggaaactca ccgcacgatc
     3541 agacgtcgtc ggcctgctcc tcgccgtt
//
LOCUS       DATIMD010000080         2513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3207854, whole genome shotgun sequence.
ACCESSION   DATIMD010000080 DATIMD010000000
VERSION     DATIMD010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3207854"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..626)
                     /locus_tag="VLI40_01820"
     CDS             complement(<1..626)
                     /locus_tag="VLI40_01820"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HSU95933.1"
                     /translation="MPRRPRLIIPNVPVHITQRGVDRCVTFISDDDFALYLWALGDAS
                     VRAGCAVHAYALMTNHVHLLVTPASSDAAACLMRALGQRYVRYFNDRYRRTGTLWEGR
                     FRSTIVDTDRYFLACSRYIERNPVRAGLVDDPGAYHWSSYRRNALGENDGIVTPHLLY
                     TSLGGDNDARRAAYVGLVASEAPPIVMSGIRTAARGRHTLGMTSYHQAV"
     gene            887..1603
                     /locus_tag="VLI40_01825"
     CDS             887..1603
                     /locus_tag="VLI40_01825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95934.1"
                     /translation="MEIHKPHPIHSWRELLKEVGIIVLGVLIALGAEQSVAAVRERHI
                     ADEARQNILQELQFNLGFIRDRVSNEPCIDRRIDELAALLGSARDGALDPAPTWIGRP
                     SIDPVFSERWQSATASGRSSLFDPVEQGRFDVMYSLLAQVYAHESQEQMAWTQLRTLE
                     TWPGPLGPAARLAFAQALQQARYEAWYLKLDATFALATGDSLGIKLPEADKPTTSICL
                     PLNTTRADALRRLGTPRGEP"
     gene            1883..>2513
                     /locus_tag="VLI40_01830"
     CDS             1883..>2513
                     /locus_tag="VLI40_01830"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSU95935.1"
                     /translation="MNVEAVNLDRLTRALADRYSIERELGQGGMATVYLAVDLKHDRH
                     VAVKVLHPDLAAVVGATRFLAEIRTTANLQHPHILPLHDSGDADGYLFYVMPYVDGET
                     LRTRLTRERQLPITDAVRIAREVASALDYAHRHGVIHRDVKPENVLLHDGSALVADFG
                     IALAVQQAGGVRMTQTGLSLGTPQYMSPEQAMGERTIDARTDIYALGAVT"
BASE COUNT          473 a          813 c          778 g          449 t
ORIGIN      
        1 accgcttgat gatagctcgt catcccgaga gtatgccgcc cgcgtgccgc cgtgcggatt
       61 cccgacatga cgatcggcgg ggcttcgctc gcaacgagtc caacgtaggc ggcacgccgc
      121 gcgtcgttgt ctccaccaag cgaggtataa agcaagtgag gcgtgacgat cccgtcattc
      181 tcaccaagcg cattccgccg atagctggac cagtgatacg ctccaggatc gtcgacgagc
      241 ccggcccgaa cgggattacg ctcgatgtac ctgctgcacg ccaggaagta gcggtccgtg
      301 tcgacgatcg tggatcggaa gcgcccttcc cacagcgtcc ccgtacgccg atatcggtcg
      361 ttgaagtagc gcacgtaacg ctgtcccagc gcgcgcatga ggcaagcggc ggcgtcggaa
      421 cttgcgggcg taaccaggag gtgcacgtga ttggtcatca gcgcatatgc gtggaccgcg
      481 cagccggctc gaacgctcgc gtcgcccagc gcccacagat acagtgcgaa atcatcatcg
      541 ctgatgaacg tcacgcagcg gtcgactccg cgctgagtga tgtgaaccgg gacgttcgga
      601 atgataagtc gtggtctacg aggcacgtga cgggtggatc gggcgcgaaa gtctgaccat
      661 gcggacggga aaaggaggac accggtcagt atcgcgctga agcttgcggc gcggcgtatc
      721 gatcattgcc aggcatcatg aactccttgc ggagtccgtc cccactccgt ccccgtcctc
      781 cgctttgacc tccgacaagt gctcccgtac attctccagc gcgtgctgca caggattatt
      841 gcagtcgtca agtgtcgccc gctaactgac aggagtacat ggcgcgatgg agatccacaa
      901 accacatccc attcacagtt ggcgcgagtt gctgaaagag gtggggatca tcgtgctcgg
      961 cgtcctgatc gcgctcggcg cggaacagag cgtcgcagcg gtgcgcgagc gccacatagc
     1021 tgacgaagcg cgccaaaaca ttctccaaga actgcagttc aatctcggat tcatccgcga
     1081 tcgagtgagc aacgagccct gcatcgatcg gcggatcgac gagctggccg ctctgctcgg
     1141 tagcgcgcgc gacggcgcac tcgaccccgc gccgacctgg attggacgtc ccagtatcga
     1201 cccggtcttc agcgagcgct ggcagtccgc aaccgcaagt ggccggtcca gtctcttcga
     1261 tcctgtggag cagggcagat tcgacgtgat gtacagcctc ctggcccagg tctacgcgca
     1321 cgaatcgcaa gagcagatgg cgtggacgca actgcgcacg ctcgaaacgt ggcccggccc
     1381 gctcggccct gccgcacgcc tcgcgttcgc ccaagccctt cagcaggcca ggtacgaagc
     1441 gtggtacctg aagctggatg ccactttcgc cctcgcgacg ggcgactcgc tggggatcaa
     1501 gctgccagag gctgacaagc cgacgacctc gatctgcctt ccgctcaaca caacgcgcgc
     1561 ggatgcactt cgccgcctcg ggactccgcg cggcgagcca tgaactgtag tgatggtgca
     1621 acgccttgcg tcgtccgcgg ctgccgcgga tattctgccc ggaggtgtcg ctcatcgtcg
     1681 tgggccgagc gcacacgtgg ccacgctagc tgaaccagga tcaggatctg tatgacgctc
     1741 cacgaacgct tcgagaaggc tcgcgctcgt tgagtacgtc ggtgacgcga gtacaggtga
     1801 cgcgggtacc gggcttagta cacagccatc gtctgatgtc gtgcagttac gctgcccgtc
     1861 gatttctccg cgcgcaccgc gcatgaacgt cgaggccgtt aatctcgatc gtctgacgcg
     1921 cgccctcgcc gaccggtatt cgatcgagcg cgagcttggc cagggtggaa tggccacggt
     1981 ctacctggct gtcgatctca agcacgaccg gcatgtcgcg gtgaaggtgc ttcacccgga
     2041 tctggctgct gtcgtcggcg cgacccgctt cctcgccgag atccggacga cggcaaatct
     2101 gcaacacccg cacatcctcc cgcttcacga ttctggtgac gcggatggat atctcttcta
     2161 cgtaatgccc tacgtcgatg gggaaacgct tcgcacgcgg ctcacccgcg aacgtcagct
     2221 cccgatcacc gatgcggtga ggatcgcacg cgaggtcgca agcgcgctcg attacgcgca
     2281 ccgtcacggc gtgatccacc gcgacgtgaa gcctgagaac gtgctgctac acgacggcag
     2341 tgcactcgtg gctgatttcg gtatcgcgct cgcagtgcag caggctggtg gcgttcgcat
     2401 gacgcagacc ggcctctcgc tcggcacgcc gcagtacatg tcgcccgagc aggccatggg
     2461 tgagaggacc atcgatgcgc gcaccgacat ctacgccctc ggcgccgtga cgt
//
LOCUS       DATIMD010000081         5146 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4652804, whole genome shotgun sequence.
ACCESSION   DATIMD010000081 DATIMD010000000
VERSION     DATIMD010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5146
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4652804"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..842)
                     /locus_tag="VLI40_01835"
     CDS             complement(42..842)
                     /locus_tag="VLI40_01835"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSU95936.1"
                     /translation="MPIADIIQGAGQLDLRAGNERGILLLHGFGDTPQTFSYLARYLH
                     ERGFDVRVPLLPGHGRNISALDASSHVEWLDRARAELFAMRARHRWTAVGGLSMGGSI
                     AAILAAEVRDLPSLVLIAPYLSMPKRLRWISATSGLWSDVVGPIHSRTTRSILDPAER
                     EANLAYGSVTGRSIHELALLVNKARRALPEITAPTLLIQSETDNRISAVSARRAFSEL
                     RMESKKLVLTHAGGHVITVDYGRERVFEEVRAWLETGPGTSPQPGRPD"
     gene            complement(876..1601)
                     /locus_tag="VLI40_01840"
     CDS             complement(876..1601)
                     /locus_tag="VLI40_01840"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSU95937.1"
                     /translation="MDDVALVRRTPRLSLSERIAASQFGAKAHWPSGFEVYRSGTAAD
                     GVFIVLHGHVVLRTPMKGGRGFVSGIAMPGETFGAEGLAPRGCYVTDAKAADGVETLH
                     LGGEQFRAFLREQPTHAISLIGQIMAERSTLLERLQELASLNVEDRLVSVLMRLSEDT
                     GFMVDDATLKLDPSHHRLLCEMVGATRESIALALSRMVNGGVASRAGSCFVIDTRQLA
                     SRHHASRYDEQTPLPMTRESARA"
     gene            complement(1606..3759)
                     /locus_tag="VLI40_01845"
     CDS             complement(1606..3759)
                     /locus_tag="VLI40_01845"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HSU95938.1"
                     /translation="MTISRLTAAIAVSIASISAAAPVVSAQGTQNAQTPISGFTSANA
                     QHQRELEAKAATLASPANADSLSRELSKEPHMAGTPAQARTRDIFARELRKYGITPEV
                     RTYSIYMPHPTSVHLYRVSPDAVELSLPEGPIAEDTTSFSYPQILTFNGYGAAGDASG
                     EVVYVNYGLIEDYATLDSLGVSVKGKIVVARYGRSYRGIKAREAEKHGAAALIIYSDP
                     ADDGFTRGDIYPEGPMRPWTGVQRGSVFNDNGDPTTPDYASVPGARRIPLDQTNLPRI
                     PVIPASYKNAAELLRDVRGGGELPRGWQGGLPFRYHVGPGPVRARVVVTTDAQTHPYK
                     DIWDVLGTIRGSEYPDELVIIGGHRDAWGPGTADNISGTVSILETARTIGDLMKQGYR
                     PKRTIVFASWDAEEWGLMGSTEFVEQDSARLFKNGAAYINFDEVTTGPDLGASGSPSL
                     RPFFRDITKVVASPSGKGSVYDAWRLSDRIKSDTAQPVIGDPGGGSDFAGFYNHLGIP
                     IADWGFGGPMGVYHSAFDSYHWMSKFGDPGYKYHATMGVMGAVAITRLADADIIPYDY
                     VEYARAMRGLTATAAKNIAAKHWTNVSLGALDSSITVMETAASRFNEARDAALAKGVS
                     ATSRKQANELLMQVERAFVRAGGLPVSKREWFRNVIYAADNDNGYANIGLPSINEAVK
                     AGDEALSVREIADLSQRFIKAAGLLDSAARSLRTQ"
     gene            complement(3759..4373)
                     /locus_tag="VLI40_01850"
     CDS             complement(3759..4373)
                     /locus_tag="VLI40_01850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95939.1"
                     /translation="MPEEMPRGYPSHIQKAFDEIRFGPLRTLNLRESLPTAEEARARA
                     DNWIRAKQVERAGELLIITGRGSGSEGGVAVIRQTILALFPSLRRRNIITKWEEHTAG
                     SFVVTLAPMTAMFEAPNRRREPAVSLPIPDSLSALSPETLKLLRDLAVSSLFMLGVHN
                     PERFVESEMVTKFTKLTAALPGSDDPEVELRAAIQHALDELDEQ"
     gene            complement(4425..>5146)
                     /locus_tag="VLI40_01855"
     CDS             complement(4425..>5146)
                     /locus_tag="VLI40_01855"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HSU95940.1"
                     /translation="HTYGPDSREQHDQILRLDRALGAFMDSLYAIHGNRNIVFALTAD
                     HAVAPYPTVHVHDNNAGAMYVDVGPYVARVRAALQASGAPKNAFAFSDGVVAIDRAAL
                     AAAHVNADSLVLAFRDTILKVPGVRRADRIRDLVHADTVHDDVARRWLHMFDSDSTYA
                     LVVTLTPYSYWGRPGGSAEHGSPYDYDAHVPMIFYGAAFRPGRYAERVRVVDMAPTLA
                     RVVGVRPTQTIDGRVITAALR"
BASE COUNT          925 a         1646 c         1573 g         1002 t
ORIGIN      
        1 aggtggatgc agatgaaccg gatagctgac cccgagctca gctaatccgg gcgccctggc
       61 tggggcgagg ttccgggacc agtctccagc caggcgcgca cctcctcgaa tacgcgctca
      121 cgaccgtagt ccacggttat cacgtgtccc cccgcatgcg tgagaacgag cttcttcgat
      181 tccattctca attccgagaa cgcccgccgc gcactcaccg cggatattcg attgtccgtt
      241 tcggactgaa tcaacaacgt gggcgccgtg atttccggca gcgcgcgacg cgccttgttg
      301 acgagcagtg ccagctcgtg gatcgatctc ccggtcaccg aaccgtaagc caggttcgcc
      361 tcacgctccg caggatcgag aatcgagcgc gtggtgcgcg agtgtatcgg accgaccacg
      421 tcgctccaca gcccggacgt cgccgagatc cagcgtagcc gtttcggcat gctgagatac
      481 ggcgcgatca gtacgagaga aggcaggtcg cgcacctcgg cggccagtat cgcggcgatc
      541 gatccgccca tcgacagacc gccgaccgcg gtccacctgt gacgcgcgcg catggcgaac
      601 agctcggcgc gcgccctgtc cagccactcg acgtgcgacg atgcgtccag cgcgctgatg
      661 ttgcgcccgt ggcccggcag cagagggacg cgcacgtcga aaccacgctc gtgcagatac
      721 cgggcgaggt atgaaaacgt ctgaggtgta tcgccgaacc cgtgcaggag gaggattccc
      781 cgctcgttgc cggcgcgcag gtccagctga cccgcgcctt gaattatgtc tgctatcgga
      841 atcgattgaa atgcgagctg ctactgctcg gtgcactacg ctcgggccga ttccctggtc
      901 atcggaaggg gagtctgctc gtcgtaccgc gaagcgtgat ggcgggatgc caactgccgc
      961 gtatcaataa caaagcacga gcccgcgcga gacgctaccc caccgttcac catgcggctc
     1021 agcgccagcg cgatcgactc gcgggtggcg cccaccatct cacagagcag ccgatgatgc
     1081 gacgggtcca gcttgagggt cgcatcatcc accatgaagc cggtgtcctc gctcagccgc
     1141 atcaggacgg agaccagccg gtcctcgacg ttgagcgaag ccagctcctg caacctctcc
     1201 agaagagtgc tgcgctccgc catgatctgg ccgatcagcg atatggcatg ggtcggctgc
     1261 tctctcagaa acgcgcggaa ctgctcgcca cccagatgca gcgtctcgac tccatcggcg
     1321 gccttggcat cagtcacgta gcaaccgcgc ggcgcgagtc cctccgcgcc gaacgtctcg
     1381 cccggcatcg ctatcccgct cacgaagcca cgtccaccct tcattggtgt tcgcaacaca
     1441 acgtggccat gcaacacgat gaagactccg tcagcggctg taccactccg gtacacctcg
     1501 aatccgctgg gccagtgtgc ttttgcgccg aactgggacg ccgcgattcg ctcgctgagc
     1561 gacagtcgcg gcgtccggcg caccaatgct acatcatcca tgacctcact gtgttcgcaa
     1621 gcttcgcgcc gccgagtcga gcagtcccgc ggccttgatg aaacgctgcg acaggtctgc
     1681 tatctcgcgt acagacaacg cttcatctcc agccttcaca gcctcgttta tgctcggcaa
     1741 tccgatgttc gcataaccgt tgtcgttgtc ggctgcatag atcacgttgc ggaaccattc
     1801 acgcttgctc acaggcaatc cgcccgcacg aacgaatgcg cgctccacct gcatgagcag
     1861 ctcatttgcc tgctttctcg atgtcgcgga cacacccttt gcaagcgctg catcacgcgc
     1921 ctcgttgaac ctgctcgcgg ctgtctccat cacagtgatc gacgaatcga gcgcgccgag
     1981 cgagacgttg gtccagtgct tcgccgcaat gttcttcgcc gcggtcgccg tgaggccgcg
     2041 catcgctcgc gcgtattcca cgtagtcgta tggaatgatg tcggcgtcgg cgagacgagt
     2101 aatggccacc gcgcccatca cgcccatggt cgcatgatac ttgtagcccg gatcgccgaa
     2161 cttgctcatc cagtggtacg agtcgaacgc cgagtggtac acgcccatcg gtccgccgaa
     2221 tccccagtcg gcgatgggaa tgccgaggtg attgtagaaa ccggcgaagt cggagccgcc
     2281 gcccggatcg ccgattacgg gctgagcggt atcggatttt atacgatccg agagacgcca
     2341 tgcatcgtac accgatccct ttccactcgg gctcgccacg accttcgtga tgtcgcggaa
     2401 gaacggacgc agcgatggcg agccgctcgc gccgagatcg gggccggtcg tcacttcgtc
     2461 gaagttgatg tacgcagctc cattcttgaa gaggcgcgcg gaatcctgct cgacgaattc
     2521 cgtggagccc atcaaccccc attcttcagc gtcccacgat gcgaagacga ttgtacgttt
     2581 cggacgatag ccctgcttca tgagatcgcc gatcgtgcgc gcggtctcga gaatgctgac
     2641 ggtgccgctg atgttgtccg ccgttccggg tccccacgcg tcgcggtgtc cgccgatgat
     2701 gacgagctca tcgggatatt cagagccgcg gatggtgccg agcacgtccc agatgtcctt
     2761 gtacggatgc gtctgcgcat cggtggtgac gacgacccgt gcgcgaactg gtcccggtcc
     2821 cacgtgataa cggaagggca gaccgccctg ccagccgcgc ggaagctcgc cgccgccgcg
     2881 cacgtcgcgc agcaattcgg cggcgttctt gtacgacgcc gggatcacag gaatgcgcgg
     2941 cagattcgtc tggtccagcg gaatgcgcct ggcgcctgga acgctcgcat aatccggcgt
     3001 ggttgggtcg ccattgtcgt tgaagacact tccgcgctgc acgccggtcc atggccgcat
     3061 cggcccttcg gggtagatgt cgccgcgcgt gaagccatcg tccgcggggt cgctgtagat
     3121 gatcagcgcg gcagctccat gcttctcggc ttcgcgcgcc ttgatcccgc gataggatcg
     3181 cccgtaccgc gcgacgacga tctttccctt caccgagact ccgagcgaat cgagcgtggc
     3241 gtaatcctcg atcagtccgt agttgacgta aaccacctcg cctgaggcgt caccagctgc
     3301 gccgtatcca ttgaacgtga ggatctgcgg ataactgaac gacgtcgtgt cttcggcgat
     3361 cggcccttct ggaagcgaca gctcgacggc atcgggcgac actctgtaca gatgcacgct
     3421 cgttgggtgc ggcatgtaga tgctgtatgt gcgcacctcg ggagtgatcc cgtacttcct
     3481 gagctcgcgc gcgaagatgt cgcgcgttct cgcctgggcc ggtgtgccgg ccatgtgcgg
     3541 ttccttcgac agctcgcgcg acagcgaatc tgcgttcgca ggcgaggcga gcgtcgcggc
     3601 tttcgcttcg agctcgcgtt gatgctgtgc gttcgccgag gtgaacccgg agatcggcgt
     3661 ctgcgcattc tgcgtaccct gcgcgcttac gaccggtgca gccgcagata tgctcgcgat
     3721 tgacactgcg atcgcggcgg tgagccttga aatcgtcatt actgttcgtc cagttcgtcg
     3781 agtgcgtgtt gaatggcggc gcgaagctcc acttcgggat catccgagcc gggtagagcg
     3841 gcggtgagct tggtgaattt cgtcaccatc tccgattcca cgaatcgctc cgggttgtga
     3901 acgccaagca tgaatagcga tgatacggcg agatctctca acagcttgag agtttcgggc
     3961 gagagtgctg acagcgaatc cggaatcgga agcgataccg cgggctcgcg cctgcggttg
     4021 ggagcttcga acatcgcggt catcggtgcc agcgttacta cgaaggagcc tgcagtatgc
     4081 tcctcccact tcgttatgat gttgcgccgt cgcaatgacg ggaacagtgc gaggatggtc
     4141 tgccgtatga ccgccactcc gccctcgctt ccactaccgc ggccggtaat gatgagcagc
     4201 tcgcccgcac gctcgacctg cttcgcgcgg atccagttgt ctgcgcgcgc gcgtgcctcc
     4261 tcggcggttg gaagcgactc ccggaggttg agcgttctca gcggtccgaa ccggatctcg
     4321 tcgaacgcct tctgaatgtg gctcggataa ccgcgtggca tttcttcggg caacttatcg
     4381 tggattcgcg ttgcgatgga agatacaacg cgtctcgctc gccatcatct gagcgccgcg
     4441 gtgatcacgc ggccatctat ggtctgggtt ggcctgacgc caaccacacg cgcgagcgtc
     4501 ggtgccatgt ccaccactct cactcgctcg gcgtacctgc ccggcctgaa cgctgcgccg
     4561 tagaagatca ttggaacgtg cgcgtcgtaa tcgtacggtg agccatgctc cgcgcttccg
     4621 ccaggtctgc cccagtagct gtacggcgtg agcgtcacga cgagtgcata ggtcgagtcg
     4681 ctgtcgaaca tgtgcagcca acggcgcgcg acgtcgtcgt gaacggtgtc agcgtgcacg
     4741 aggtcgcgaa tgcgatccgc gcgtcgcacg cccggtacct tgagaatcgt atcgcgaaat
     4801 gcaagcacga gcgaatcggc gttgacgtgc gcagcggcca gcgcagcacg gtcgattgcg
     4861 acgacgccgt cgctgaatgc aaatgcattc ttcggcgcgc ccgatgcctg caatgcagct
     4921 cgtacccgcg cgacgtacgg tccgacgtcg acgtacatgg caccggcatt gttgtcatgc
     4981 acatgcacgg ttggatacgg tgctaccgca tgatcggcgg tgagtgcgaa cacgatgttg
     5041 cgattgccat gtatggcgta gagcgaatcc atgaacgcac cgagtgcgcg atcgagccgg
     5101 agtatctgat cgtgctgttc tctcgaatcg ggaccgtagg tgtgcc
//
LOCUS       DATIMD010000082         8580 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4653229, whole genome shotgun sequence.
ACCESSION   DATIMD010000082 DATIMD010000000
VERSION     DATIMD010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8580
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4653229"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(182..394)
                     /locus_tag="VLI40_01860"
     CDS             complement(182..394)
                     /locus_tag="VLI40_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HSU95941.1"
                     /translation="MRTTGKVKWFNDAKGFGFITPDNGQKDCFVHYSAISGNGFKSLQ
                     EGEAVEFDIVQGQKGPAAENVTRMNG"
     gene            complement(580..1017)
                     /locus_tag="VLI40_01865"
     CDS             complement(580..1017)
                     /locus_tag="VLI40_01865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95942.1"
                     /translation="MTSSEPIPEASKASKRKRRLWLKVGVPIVVVLILGAGLWTWGSL
                     GFVYSSGERTGYVKNLTQRGWLCKTWEGELAVSPIPGPAVGDTTAKGSGVFDFTIRND
                     SVARALQLADGKQVTLSYGEHRGVPTTCFGETKYFVQGFRVAQ"
     gene            1048..2298
                     /gene="ispG"
                     /locus_tag="VLI40_01870"
                     /gene_synonym="gcpE"
     CDS             1048..2298
                     /gene="ispG"
                     /locus_tag="VLI40_01870"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HSU95943.1"
                     /translation="MPFGPRRRTVTTLVGDVAVGSDHPVVVQSMTNTDTADVGGTVAQ
                     VAALAAAGSQLVRVTVNNETSAAAVPEIVERLADVGIDVPIVGDFHYNGHILLAKYPD
                     AARALAKYRINPGNVGGKRRDEHFRTIVRIAIDNAKPVRIGVNWGSLDQDLLTSMMDE
                     NAARPDPLGARDVYIEAMLESALRSATLAEETGLGHDRIIISAKVSGVNDLVDIYRLL
                     AARCDYPLHLGLTEAGLGMKGIVASTAGLSILLSEGIGDTIRVSLTPKPGGDRTEEVL
                     VAQQILQSLGLRSFTPQVTSCPGCGRTTSTFFQHMAEDIQTYLREQMPEWRAHYPGVV
                     EMKVAVMGCIVNGPGESKHANIGISLPGTFEDPKAPVYVDGKLAVTLKGDNIVPEFLK
                     ILDDYVERTYGVASDADSGITAGV"
     gene            2252..3265
                     /locus_tag="VLI40_01875"
     CDS             2252..3265
                     /locus_tag="VLI40_01875"
                     /inference="COORDINATES: protein motif:HMM:NF023828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3667 domain-containing protein"
                     /protein_id="HSU95944.1"
                     /translation="MASPATLTAASQPESDPPTAAAQGRTCLNCGTFLTDAFCAHCGQ
                     RAGDVRLSVRDITHEAVAEHFGLDSKVARTLVTLLRRPGYLTMEFLAGRRVRYVPPLR
                     LYLSLSVLFFLCSSTSARLSGTNGQGIVRFNTSGASESPRQIISFDTTALARSAGNAG
                     LSRSGDSTGIKPKAASGIGSEISIDTMHGNALTLFLRRRIDRRAVYMQSHRAEASARV
                     SEAFQHDFPDAHFLLVPGLAFALWVLYHGERRYFAEHLVFAMHFQAFAFAALTVGLLP
                     IPFMDAIVGLAILAYLFLALRRVYGQSIALTTGKFAAIVVGYGISLAAITSVVAFAAF
                     LFA"
     gene            complement(3286..3783)
                     /locus_tag="VLI40_01880"
     CDS             complement(3286..3783)
                     /locus_tag="VLI40_01880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HSU95945.1"
                     /translation="MAEVTLDLRGIPKSQAYSELAGHIDAVLDGIDDDIAEMATVSAL
                     VHNAFGFLWTGFYRVVTPGKLLRVGPYQGTLGCLEIVFGRGVCGTAAAERRAIVVQDV
                     ETFPGHIACDASARSEIVLPVIDSSGDLIAVFDIDSEHTGTFDSEDERGLRQILSRFA
                     RPATQ"
     gene            complement(3802..3936)
                     /locus_tag="VLI40_01885"
     CDS             complement(3802..3936)
                     /locus_tag="VLI40_01885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95946.1"
                     /translation="MSKILRGIAAGYGARKLGGGGCGCGTILIFIILWYVLGHFGIFK
                     "
     gene            4079..4747
                     /locus_tag="VLI40_01890"
     CDS             4079..4747
                     /locus_tag="VLI40_01890"
                     /inference="COORDINATES: protein motif:HMM:NF037491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5640 domain-containing protein"
                     /protein_id="HSU95947.1"
                     /translation="MKKLPFIGTAAAAALALIASSSIGAQTSSQPIPQSIPQSIVGAW
                     RADAPLPNGVVQTFRFDPDGKFDLAQALAVEGQYRIDGNQLIETVTLPSVGMTHTDTA
                     TFTIKGDSLIVSERTGAPPRVLRRTGAAVASTPIAGDWTITVGNGVAAHYVFGADGTM
                     HMHAQVGDEQGKYVVRADTLHLSNDQTFQLPAIAHFAVADSVLTLTPQNGKQARQFHR
                     VTQR"
     gene            complement(4833..6476)
                     /locus_tag="VLI40_01895"
     CDS             complement(4833..6476)
                     /locus_tag="VLI40_01895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95948.1"
                     /translation="MPPGNPTYVWIAARARNALRRRAMTSIVTGVAFVCALIGLVLLP
                     RETTRLVRITTERPAEKTVDTSAAADALALARASIRQADSALAAARRVVALQQPVAAP
                     PQDTLSPALRAERDSLNALLASLTAAMARASDSPLPPAFRALGQSPALAKDARVRVWL
                     DSLDQVDKLRAPFGALGAGDPIYVALTARVNELGRSIRDAAADKRSELRARIAPLMAP
                     PPPLPTLQTTHVDTAVFVSERARATQEFLQARQRLDSLRSVNARIDTVATQAREVANV
                     GAPPIAMLAAALVIALAVGFSVVFIGEMRHPRVAHMREGEAVSNVRVLSVIQPGSIVE
                     RSRRQSDIETPPLIDITSESYRTLYLHLAATEASVPIVTVTGDIPAVVATIAANLAAV
                     AAYEARSTLLVDGDPSTSCVSSILRIDSDPGLHGVLGGDIDLFGAIVPTTIGRDRPLD
                     VLPSGHGRIGTASPDAIRSVHETLARMERRYDFIVIVAPSSYAQLRTNTIVPAPDVIV
                     CAQVGATQIADLRAAVKNLRAAGKLVHGIVLWDDEAPRL"
     gene            complement(6609..7142)
                     /locus_tag="VLI40_01900"
     CDS             complement(6609..7142)
                     /locus_tag="VLI40_01900"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HSU95949.1"
                     /translation="MRYFGFTAIAASALMLAACGGGEKAADTTAAATTPAADTTAAAA
                     PGSTSTAAATPAAGAVAPAPITGTIHDVKMIGDAKGYRFEPASITIKEGDGIRYTNVS
                     GGPHDVAFDPAQIPAAVKPQLSANMPDQMSDLAGKLLVQPNETYTISFAKIPPGTYEA
                     HCTPHLAMNMKQTITVQ"
     gene            7430..8353
                     /gene="hisG"
                     /locus_tag="VLI40_01905"
     CDS             7430..8353
                     /gene="hisG"
                     /locus_tag="VLI40_01905"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HSU95950.1"
                     /translation="MPPAEFQLESIPARTVSPPILRIALPNKGRLAQDTRDLFTDAGL
                     EVRASSDRALKASLGADFEAIFVRAQDIPEFVSDGAADAGVTGLDLIAENRRGVVSRL
                     DLGFGRCRLSMAAREESGLDDFRQVPSRTRVATVFPNITARFCAEAGLDLEIVPISGA
                     AEIAPHLGIADVIVDLVSTGSTLKTNGLREIGTIMQSTAQLVVAEDRTGWTPAKETAL
                     QELCTALESVTSARGQRYLMANVPRDRLDEVRQVLPGLNGPTVIDVLDGGRHVAVHAV
                     VAASAIYRTIADLKAIGGEGILVTRIERLMR"
     gene            8350..>8580
                     /locus_tag="VLI40_01910"
     CDS             8350..>8580
                     /locus_tag="VLI40_01910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95951.1"
                     /translation="MIDIANSGNIWLTEGIANLTNASKTALFSRATTPDDSIAVTTAR
                     LLKEVRVHGDRALSRMAKDFDGVELTAVEVARP"
BASE COUNT         1660 a         2770 c         2489 g         1661 t
ORIGIN      
        1 ctcgagagcc tcgcccgcgc tgtggagctc gcccccacac gccggcgggg acgcccgccc
       61 aaaagataag ctgctccgtc ctccggcgcg tctcggaccg gtgcacagca acaacatcgc
      121 acaacgaaag aggggcgtcc ctttcgagac gcccctcttt cgccattgct tcaggatcgc
      181 gttacccgtt catccgggtc acattctccg ctgcgggccc cttctgcccc tggacgatgt
      241 cgaactccac cgcctcaccc tcttgcagcg acttgaagcc gttgcccgag atggcgctgt
      301 agtggacgaa gcagtccttt tgaccgttgt cgggcgtgat gaaaccaaag cccttcgcgt
      361 cgttgaacca cttcaccttt ccggtcgtac gcattccagc taactcctga atagaaactt
      421 gtccggaagc aggaaacgcc taccctgaca atattgcgga tagttcagat cccccgcaca
      481 gatccatagg acgatcctat gctgggccac aaaatattgg cggctggaat tttaggcaat
      541 agacaagttt tcccttcgga ttgggccgtc gcccaacggt tactgggcga ccctgaaccc
      601 ctgcacgaag tacttcgttt cgccaaagca ggtcgtgggt acgcccctgt gctcaccata
      661 cgacagcgta acctgcttcc catccgccag ctggagcgcc ctcgcaacgg aatcgttccg
      721 gatcgtgaag tcgaagacgc ccgatccctt ggcagtcgta tcgcccacgg ccggtcctgg
      781 tatcggcgac acggccagct ccccctccca tgtcttgcag agccacccgc gctgggtcag
      841 gttcttcacg tagccggttc gctctcccga cgagtacacg aagcccagac ttccccatgt
      901 ccagaggcct gcgccgagta tcaggacgac cacgatcggc accccgacct tgagccacaa
      961 ccggcgcttc ctcttagacg cttttgatgc ctctggtatc ggttcgctcg acgtcatccc
     1021 ttttctctcc gcggttactt ttccagtatg cccttcggac cgcgcagaag aacggtgacg
     1081 accctcgttg gcgacgtcgc cgtcgggtcg gaccatccgg tcgtggtgca gtccatgacc
     1141 aacacagata ccgccgacgt cggtggtacc gtcgcccagg tcgcggcact ggccgccgct
     1201 ggctcccagc tcgtacgcgt cactgtcaat aatgagacgt cagcagccgc cgtgccggaa
     1261 atcgtcgaac gactcgctga tgtcggaatc gatgtcccga tagtcggcga cttccactac
     1321 aacggccaca ttctactcgc aaaatacccg gacgcggcac gcgctctcgc gaaatatcgc
     1381 atcaatcctg gaaacgtggg cggcaagcgg cgcgacgaac acttccgcac catcgtccgg
     1441 attgccatcg ataacgcaaa gccggtgcgc ataggcgtca actggggctc gctcgatcag
     1501 gatctcctca cgtccatgat ggacgagaat gccgcgcgcc ccgatccact cggcgcgcgt
     1561 gacgtctata tcgaggcgat gctcgagagt gcgctcagat cggcaacgct cgccgaagaa
     1621 acgggcctcg gacacgaccg gatcatcatc tccgccaagg tctccggcgt caatgatctc
     1681 gttgacatct accgactcct cgccgcgcgc tgcgattatc cacttcatct gggtctcacc
     1741 gaggccggac tcggcatgaa gggaatcgtc gccagtacag ccggactgtc gattctgttg
     1801 agcgaaggaa tcggcgacac catccgcgtc tcgcttaccc cgaagcccgg cggcgacaga
     1861 accgaagaag tacttgtcgc ccagcagatt ctccagtcac tgggtctgag atcgttcaca
     1921 cctcaggtga catcatgtcc cggttgcggt cgcacgacgt cgacgttctt ccagcacatg
     1981 gcagaggaca tccagaccta cctgcgcgag cagatgcctg aatggcgagc acactatccc
     2041 ggcgttgtag agatgaaggt cgcggtgatg ggatgcattg tgaacggacc tggcgagagc
     2101 aagcacgcca acatcggcat ctcgctcccg ggaacattcg aagatcccaa ggcgcccgtg
     2161 tatgtggatg gcaagctcgc cgtaactctg aaaggcgata acatcgttcc cgagttcctg
     2221 aaaattctcg acgactatgt ggagcgaacc tatggcgtcg ccagcgacgc tgacagcggc
     2281 atcacagccg gagtctgatc caccgacagc tgcggcacag ggccgtacct gtctcaactg
     2341 cggcaccttt cttaccgacg cgttctgcgc ccattgcggc cagcgcgccg gagatgtgcg
     2401 cttgtccgtg cgcgacataa cacacgaagc cgtcgcggaa cacttcggac tggacagcaa
     2461 ggtcgcacgc acgctcgtca cactgctgcg ccgtcccggc tatctgacga tggagttcct
     2521 cgcgggccgg cgcgttcgct acgttccgcc actgcgcctc tatctatccc tgagcgtact
     2581 gttcttcctg tgctcctcga caagtgccag actgagcggc acgaacggcc agggtatcgt
     2641 ccgattcaac acatccggcg ccagtgaaag cccacgacag atcatctcgt tcgacacgac
     2701 cgccctggcc aggagtgcgg gtaacgcagg actgagcaga tctggcgact cgactggcat
     2761 caagccgaaa gcggcgagcg gtatcgggag cgaaatctca atcgatacga tgcacgggaa
     2821 tgcgttgaca ctgttcctgc ggcggcgtat cgatcgccgc gccgtgtaca tgcagagcca
     2881 cagagccgaa gcttcagctc gcgtctccga agcgtttcaa cacgattttc cggatgctca
     2941 ttttctcctg gtaccaggac tcgcgttcgc gctgtgggtc ctgtatcacg gcgaacgtcg
     3001 ttacttcgcc gagcatctgg tatttgcgat gcactttcag gcgttcgcat tcgcggcact
     3061 gaccgtcgga ctgcttccga tcccgttcat ggatgcgatc gtgggcctgg cgattctggc
     3121 ctatctgttt ctggcattac gacgcgtata cggacagagc atcgctctta caaccggaaa
     3181 gttcgccgcg attgtcgtgg gttatggcat ctccctggcg gcgatcacga gcgtagtagc
     3241 ctttgcggcg tttctcttcg cctagcgcgt tgcccagcgc gttgtctatt gcgttgccgg
     3301 gcgcgcgaac cgcgagagaa tctgcctgag accgcgctcg tcttctgagt cgaatgttcc
     3361 ggtgtgctcc gaatcgatgt cgaacaccgc tatcagatca ccgctcgagt cgattaccgg
     3421 aagcacgatc tctgaacgcg cgcttgcatc acacgcgatg tggccgggaa acgtctcgac
     3481 gtcctgcacc acgatcgcac gacgctccgc agcggcagtg ccacacacgc cacgtccgaa
     3541 cacaatctcg agacagccga gtgtgccctg gtacggcccc acgcgcagca gcttgcctgg
     3601 tgtcacgacg cggtagaagc cggtccacag aaaaccaaac gcgttgtgta ccagcgcgct
     3661 taccgtcgcc atctccgcga tgtcatcatc gatgccgtcc agtacggcgt cgatgtggcc
     3721 tgccagctcg ctatatgcct gactctttgg aattccgcgc aggtccagcg ttacttcagc
     3781 catgcacgaa agctagcact attacttgaa tattccgaag tgcccgagca cgtaccagag
     3841 aatgatgaaa atgaggatgg ttccgcagcc gcatccgccg ccacccaatt tcctggcgcc
     3901 gtagcccgcc gcgatcccgc gtagaatctt gctcatgagg cctccccgta tgcacggacc
     3961 gtaccgggca atcgtgccgg tattgtttca ccgaagctcg ttgaatcgtc tttttccgag
     4021 cattttccgt tgcgaacgac agactccgcc agccgcacag tcacaagtga tgtcgccaat
     4081 gaagaaatta ccatttatcg gaaccgccgc cgccgccgcc ctggctctga tcgccagcag
     4141 ctccatcgga gctcagacgt cttcgcagcc cattccacag tccattcctc agtccatcgt
     4201 gggtgcgtgg cgcgcagacg cgccacttcc gaacggcgtg gtccagacat tccgattcga
     4261 tcccgacggc aagttcgatc tcgctcaggc gctcgccgtc gagggccagt accggatcga
     4321 cggtaatcag ctgatcgaaa cggttactct gcccagtgtt ggtatgacac ataccgacac
     4381 cgcgacgttt accatcaagg gtgattcgct gatcgtgagc gaacgcaccg gcgcgccacc
     4441 gcgggtgctg cgccggaccg gtgccgcggt cgcgtccacg ccgattgccg gcgactggac
     4501 gattacggtc ggcaatggag tcgcggcaca ctatgttttt ggcgccgatg gcacaatgca
     4561 catgcacgcg caggtcggcg atgaacaggg aaagtacgta gttcgcgccg acacgctgca
     4621 tctgtccaat gatcagacct ttcagctgcc ggcgatagcg cacttcgcgg tcgcggacag
     4681 cgtgctcacg ctgactccgc agaacggaaa gcaggctcgc cagtttcaca gagtcacgca
     4741 gcgctagcat ttcccgctgg cttcgaaatc gtcagtcgga cctgcacacc gattgacacg
     4801 tcggatgaca ggcgcccgct ctcgcgccca cgctacagtc gcggcgcctc gtcgtcccac
     4861 agtacgatcc catgcaccag cttccccgct gcgcgcagat tctttacggc cgcgcgaaga
     4921 tccgcgatct gcgtcgcgcc cacctgcgcg catacgatca catcaggtgc cggcacgatc
     4981 gtgttcgtcc tgagctgagc gtagctcgat ggagcgacta tcacgatgaa gtcgtaacga
     5041 cgctccattc gcgcaagcgt ttcgtgaacg ctgcgaatcg cgtcgggcga tgctgtgcct
     5101 atgcgaccat gaccgctcgg cagcacgtcc agcggacgat cgcgcccgat cgttgtcggt
     5161 actatcgctc cgaacagatc gatgtccccg ccaagtacac catgcaatcc cggatcggaa
     5221 tcgatccgca atatcgacga gacacaactg gtggatgggt cgccatccac cagtagcgtg
     5281 ctgcgggctt cgtaggccgc gacagctgcg agatttgcgg caatggtagc aaccacagca
     5341 ggaatgtcac cggtcacagt tacaatcggc acgctcgctt cggtggcggc aagatgcagg
     5401 tacaacgtcc ggtaactctc ggaggtgatg tcgatcaggg gaggcgtctc gatatccgat
     5461 tggcgccggc tacgctccac gatgctgcct ggctgaatca cgctcaacac acgcacgttc
     5521 gacacggcct cgccttcacg catgtgcgcc acacgaggat ggcgcatctc accaatgaac
     5581 acgacggaaa acccgacggc gagcgcaatc acgagcgccg cagccagcat ggcgattggc
     5641 ggtgcaccga cgttcgccac ctcgcgcgcc tgcgttgcta ctgtatcgat tcgcgcgttg
     5701 acactccgta gcgaatcgag tcgctggcgc gcctgaagaa attcctgggt cgcgcgcgct
     5761 cgctcgctca cgaacactgc tgtatccacg tgcgtggtct gaagcgtagg tagcgggggc
     5821 ggcggcgcca tgagcggtgc gatgcgcgcg cgcagctccg atcgcttgtc agctgcggcg
     5881 tctcgaatcg atcggcccag ttcgttcact cgcgccgtca acgccacgta gatcggatcg
     5941 cccgcaccca gcgcgccgaa tggcgcgcgc agcttgtcca cctgatccag cgaatcgagc
     6001 catacccgca cgcgcgcgtc cttcgcgagt gccggtgatt ggcccaacgc cctgaacgcc
     6061 ggcggcaacg gcgaatccga ggcgcgagcc atcgctgcgg tgagcgatgc aagcagagcg
     6121 ttgagcgagt cacgctcggc gcggagcgcc ggcgacagcg tgtcctgcgg cggtgcggcg
     6181 accggctgct gcagggcaac gactctccgc gccgcggcaa gcgccgaatc cgcctgtcgt
     6241 atcgaggcgc gcgcaagcgc aagcgcatct gcggcggccg aagtgtcgac agtcttctcg
     6301 gccggacgct cggtcgtgat gcgcaccagt cgcgttgtct cgcgcggcag gagcacgaga
     6361 ccgatcaggg cacatacgaa tgcgacaccg gtgacgatgc tcgtcatcgc gcggcgccgc
     6421 aatgcgttgc gcgctcgcgc ggcgatccac acgtacgtcg ggttacctgg cggcattcag
     6481 tcccagatcg gaagctccgc taactgttcg gctcagccgg agttgctaag ccgaaacaaa
     6541 acgaaccggc tgccccggag caagttcagc tccggggcag ccggtgagat gcgagatcgc
     6601 ggttgctact actgaaccgt gatggtctgc ttcatgttca tggcgaggtg cggcgtgcag
     6661 tgcgcctcgt acgtgcctgg aggaatcttc gcgaatgaga tcgtgtaggt ctcgttcggc
     6721 tgaaccagga gcttgccagc gagatcgctc atctgatcag gcatgttcgc agacagctgc
     6781 ggcttgacgg ccgcgggaat ctgagctggg tcgaacgcaa cgtcgtgtgg tccaccgctg
     6841 acgttggtgt agcggatccc gtcgccttcc ttgatcgtga tcgaggctgg ctcgaaacgg
     6901 tagcccttcg cgtcgccgat catcttcaca tcgtggatcg tgccggtgat cggggccggt
     6961 gcaacggcac ccgccgctgg cgtcgcagcc gctgttgagg ttgaacctgg ggccgcggcc
     7021 gcagttgtat cagctgctgg ggtagtcgca gcagccgtcg tgtcggcagc cttctcgcca
     7081 ccgccgcatg cggcaagcat caaggcgcta gccgctattg cagtaaaacc gaaataccgc
     7141 atctgcttca ttctcctgga taagtgcacc cagcgagcgc tctcgccgag cattgtgaaa
     7201 gtattcacaa accgcgccca tttcaatgtt gacaacaaaa cgccctacgg taacatttat
     7261 ggcatggctc gtaccgcaac ccaccatgtg catcatctcc atgtcctgac ggaccgggga
     7321 ttctgtcgca cgtgatgggc tgaccagcca accatccgcg atctccggcc cgtccttctg
     7381 gacgggcctt tttgttttcc ggtcaaattt tctcctattc cgcactcaca tgccaccagc
     7441 tgagttccag ctcgaatcga tacctgcccg caccgtcagt cctcccatcc ttcggatcgc
     7501 gcttccgaac aagggccggc tggcccagga cactcgcgat ctcttcaccg acgcgggtct
     7561 cgaggtccgc gcctccagtg atcgcgccct caaagcgtca ctcggcgcag acttcgaggc
     7621 gatcttcgtt cgagcccagg atatccccga gttcgtgtcc gacggcgctg cggacgccgg
     7681 cgtgaccggt ctggacctga tcgcagagaa caggcgcgga gtggtctcca gactcgatct
     7741 cggatttgga cgatgccggc tgtccatggc tgcgcgggag gaaagcggac tcgacgattt
     7801 tcggcaggtg ccgagccgca cccgcgtcgc aaccgtattt ccgaacatca ccgcgcgctt
     7861 ctgcgctgag gccgggctcg acctcgagat agtgccgatc tcaggcgcgg ctgagatcgc
     7921 accccatctg ggaattgccg acgtcatagt cgatctggta tccacagggt ccaccctcaa
     7981 gaccaacggt ctgagggaga tcggcacgat catgcagtcc acggcgcagc tggtggtcgc
     8041 cgaagatcga actggatgga cccctgccaa ggagacggct ctccaagagc tctgtaccgc
     8101 gctcgaatca gtgacgtctg cacgcggcca gcgctatctc atggccaatg tcccgcgtga
     8161 caggctcgat gaagtgcgtc aggtcctgcc aggcctcaat ggcccgaccg tgatcgacgt
     8221 cctcgatggc ggccggcacg tggccgtcca cgcggtggtt gcagcttccg cgatatatcg
     8281 aaccatcgcg gacttgaagg cgatcggcgg agagggaatc ctcgtgaccc gcatcgagag
     8341 gctgatgcga tgatagatat tgctaactca ggtaatattt ggctaacaga gggtatagcg
     8401 aacctcacaa atgcctcgaa aacggcgctt ttttcgcgcg caacaactcc tgatgattcg
     8461 attgcggtga cgacagcgag gctgctgaaa gaggtcaggg ttcacggcga tagggcgctg
     8521 tccaggatgg cgaaggactt tgacggggtc gagctgaccg cggtcgaggt ggctcgccca
//
LOCUS       DATIMD010000083         2446 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4074077, whole genome shotgun sequence.
ACCESSION   DATIMD010000083 DATIMD010000000
VERSION     DATIMD010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4074077"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..695)
                     /locus_tag="VLI40_01915"
     CDS             complement(<1..695)
                     /locus_tag="VLI40_01915"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU95952.1"
                     /translation="MTAAIVTEGLRKVYPATGGSGIPGAQPGWGPAAGAPPRSGGETV
                     ALEGLDLVVNEGEFFGLIGPNGAGKTTTIGVLTTRIIPTGGVAHVAGADVVRQSVTVR
                     QRIGVVPQRPNPDRSLDAWENLIYHAAYFGVPRKEAARRATQLLERLGIADKARMKVD
                     QLSGGQQQRLMIARALIHEPTILFLDEPTVGLDPNARNSLWEILRDLHAQGRTIVMTT
                     HYMPEADELSDRIA"
     gene            854..1954
                     /locus_tag="VLI40_01920"
     CDS             854..1954
                     /locus_tag="VLI40_01920"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSU95953.1"
                     /translation="MIFRRFYDDSLAQASYMIACERSAEAIVIDPNMDVEMYLRAARD
                     ERVRVTAVTETHIHADFASGARALAAATGAQLHVSGEGGNGWQYSFAHEPGVNILHAG
                     DEITNGMVRLDVHHTPGHTPEHLTFVLTDRARSDVPVGAVTGDFIFVGDVGRPDLLER
                     AAGLAGTMRNSAASLYASIQAFKRLPDHLQIWPGHGAGSACGKAMSSAAQSTLGYERV
                     ANWALAPMTESEFVDRVLEGQPPAPPYFGAMKARNRDATVPRKVALPRMMTSDEVAGL
                     GVDDNALIVDVRNEDEWGRGHIQNAMLIPVSSLHTRLGEIPRDRAIVLHCQRGSRSAV
                     AAATLDAFGYDDVHELSGGMSAWEAAGHPVAT"
     gene            1956..>2446
                     /locus_tag="VLI40_01925"
     CDS             1956..>2446
                     /locus_tag="VLI40_01925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95954.1"
                     /translation="MAGVGGRGGRARDRADAENATWAERRAALRYVPPLVRMVWKTHR
                     GYALTMILLRVARAFIPVATFWIGKLIIDGVIAARAGNGTLTALWRYIAMELAIVAAG
                     EIMARVSALVESLLSDLFSNKMSVRLMEHAATLDLAQFENPDFYDHLERARRQTVGRI
                     ALLT"
BASE COUNT          434 a          780 c          789 g          443 t
ORIGIN      
        1 gctatgcgat cgctcaattc atccgcctca ggcatgtagt gagtggtcat tactatggtg
       61 cgtccctgcg cgtgcaggtc acgaagtatc tcccacaacg agtttcgcgc gttggggtca
      121 aggccaactg tgggctcatc caggaaaaga atcgtcggct cgtgaatcag cgcgcgtgcg
      181 atcatcagcc gctgttgctg tccgccgctc agctgatcca ccttcatgcg cgccttgtcg
      241 gctattccca ggcgctccag aagttgggtc gccctccgcg cggcttcctt gcgcggcact
      301 ccgaaatatg cagcgtggta gatcaggttc tcccaggcat ccagcgagcg gtccggattg
      361 ggacgctgcg gcaccacgcc gatgcgttgc cgcacggtta cgctctggcg cacgacgtcc
      421 gcgccggcca catgggcaac tccaccggtt ggaatgatgc gagtcgtcag aacgccgatg
      481 gtcgtcgtct tgccggcgcc gttgggaccg atgagcccga aaaattcccc ctcgttgaca
      541 acgaggtcga gcccttcgag cgcgacagtc tcgccaccgc tgcgcggcgg cgctcccgcc
      601 gcgggccccc aaccaggttg agcaccgggt atgcccgatc cgcctgtggc cggatacacc
      661 ttgcgcagtc cttcggtaac tatcgctgca gtcatgcgga caatttaccg ggtctccatc
      721 gccggtgtgg gcccgccaaa accagctcca aaaactgctc cagaaccagt tccggtgggc
      781 gggtttttga ttctgcttat cttgttaatt caggcacccg aaaccggcgc atgcccaccc
      841 caacaccccg atcatgatct ttcgccgctt ttacgacgac tcgcttgccc aggccagcta
      901 catgattgcg tgcgaacgca gcgccgaggc gatagtcatc gatccgaaca tggacgtgga
      961 gatgtacctc cgagctgcgc gcgacgagcg cgtgcgggtc accgctgtaa ccgagacgca
     1021 catccacgct gactttgcat ccggcgcgcg cgccctcgcg gcggcgacag gagcgcagct
     1081 ccacgtctcg ggcgagggtg gtaacggatg gcaatactcg ttcgcacatg agccgggtgt
     1141 gaacattctg cacgctggcg acgagattac taacggaatg gtgcggctcg acgtgcatca
     1201 cacacccgga cacacgccgg agcacctgac gttcgtgctg accgatcgcg cgcgaagcga
     1261 cgttcccgtt ggagcagtca cgggagattt catcttcgtt ggcgacgtcg gacgtccgga
     1321 cctgctcgag cgcgcggcag ggctggctgg aacgatgcgc aactcggccg catcactgta
     1381 cgcatcgata caggcgttca aacggctgcc cgaccatctt cagatctggc cgggtcacgg
     1441 ggccggatcc gcatgcggca aggcaatgag ctcggcggct caatcgacgc ttggctacga
     1501 gcgcgtcgcg aactgggcgc tggctccgat gaccgagtca gaattcgtcg atcgcgttct
     1561 cgagggccaa cctcccgcgc cgccgtattt cggtgcgatg aaagcacgta accgtgacgc
     1621 gacggtgcca cgcaaggtcg cgcttccgcg catgatgacg agcgacgagg tcgccggcct
     1681 cggcgtcgac gacaatgctc tgatcgtcga cgtccgcaac gaggacgaat gggggcgcgg
     1741 ccacatccag aacgcgatgc tgataccggt ttccagtctt cacacgcgac ttggcgagat
     1801 cccgcgcgac cgtgcgatcg tacttcactg ccagcgcggc agccggtcgg cggtcgccgc
     1861 ggcgacgctg gacgcgttcg gctatgacga tgtgcacgag ttgagcggcg ggatgtcggc
     1921 gtgggaagca gcaggtcacc cggtcgcgac gtaagatggc cggcgtaggc ggacgcggag
     1981 gacgcgcccg ggaccgcgca gatgcggaga acgcgacgtg ggccgagcgc cgtgcggcgc
     2041 tgcggtacgt tccgccgctc gtgcgcatgg tgtggaagac acaccgcggc tacgcgctga
     2101 cgatgatcct gcttcgcgtt gcgcgggcgt tcattccggt cgcgacgttc tggataggca
     2161 agctgataat cgacggcgtg attgccgcgc gcgccggcaa cggcacgctc accgctctgt
     2221 ggcgctacat cgcgatggag ctcgcgatcg tcgccgcggg cgagataatg gcgcgtgtgt
     2281 cggcgctggt cgaaagcctg ctgagcgatc tcttctcgaa caagatgagt gtgcgtctga
     2341 tggagcacgc cgcgacgctc gatctcgcgc agttcgagaa tccggatttc tacgatcacc
     2401 tcgagcgagc gcgacgccag acggtggggc gcatcgcact gctgac
//
LOCUS       DATIMD010000084         5811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1188536, whole genome shotgun sequence.
ACCESSION   DATIMD010000084 DATIMD010000000
VERSION     DATIMD010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5811
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1188536"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            216..1427
                     /locus_tag="VLI40_01930"
     CDS             216..1427
                     /locus_tag="VLI40_01930"
                     /inference="COORDINATES: protein motif:HMM:NF025617.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4350 domain-containing protein"
                     /protein_id="HSU95955.1"
                     /translation="MRVLSAAAALLALFILLAPQEREDVGAAYSSYAVGAGGARALYE
                     TLGRLGFVVSRNEVSLASAPISDSTSAYALIQPAQPLTTIERTQLLAAVRRGLVLIFT
                     PDDDELADSLGFELRSTPGAFYTLSRTTVAGGNPPAPATQDPRAAFQEAFPISVTVAS
                     KSKSGNQTFLWLQSLSAVDQATSDSAQRPALVLGHRFGRGYVIAVAPAQILMNQVMRQ
                     PRAAIAVVRALQFANGSASPTARSPRVVFDEYHHGFGAHADMPAAIVHALTDTPPGRV
                     ALEITVAALVLLLAFAVRPLAPVPIPPISRRSPLEHVGALAHAYSQIDARRLGTSMLV
                     RGLRRRHSLGLPRSASSTTYLSALRDRLPGASADVDRIVTALAPDSPTSSDHFAVTGA
                     AVANIERAFRE"
     gene            1424..2383
                     /locus_tag="VLI40_01935"
     CDS             1424..2383
                     /locus_tag="VLI40_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HSU95956.1"
                     /translation="MTDLTATSAALQRIRETVAARVLGQEEVIDQILAAFVARGHILL
                     EGVPGTAKTLLVRVLAGALDVRFGRVQFTPDLMPSDVAGVSVYQESSRAFEFRPGPIF
                     TDLLLADEINRAPAKTQSALLEAMQERQVTVDGVTHSLGDMFSVFATQNPVEYEGTYP
                     LPEAQLDRFLVNVRIGYPARGAELAMLANYSEGFDAERASTFMPAPVVSAAEVLQLRT
                     MTDSVNVTVEVREYITDIVRATREDTSLMLGASPRAAVALFRIARAAALVAGRDFTTP
                     DDVKQHALPVLRHRILLSPELQVEGRSTDDVITAILARVPAPQ"
     gene            2421..3791
                     /locus_tag="VLI40_01940"
     CDS             2421..3791
                     /locus_tag="VLI40_01940"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSU95957.1"
                     /translation="MTPSQLIGRITRPLRLLARYAPTPRLALVIAIAAPVWVFSSGTA
                     GQVVATAIAAIIVIAALADALRIPGARYVALERDFPAAIGVADTRSGRYTITSSWPAS
                     LSVSITQQLPSGVTTTGLHLDKLELGPNAPLLVDLAITGRSRGTFSLGPVALTVPGPW
                     KLIRRSIIYYPNDTISVTPSMANAGRYRLLAAQHRVRTAGQRVIRRRGAGTSFANLRD
                     YVPGDDPRRIDWKATARRHRLISREFTVEQGQTIMIAIDCGRMMTQLAGDRPRFEYAL
                     ASALTLADIALSTGDRVGLIVFDSLVRRYIAPTRAPGTLGALRDALTGVTATMTEPDY
                     AAAFRTLTERNRRRSLIVLFTDVIDVRSSRAVIALTVRSAERHLPLVVALRNEQLVMA
                     SVPSRDASDEQTYESAAAEELLSARDEALQIMRQAGVAVLDTAPTGMTAALINRYLEI
                     KERSAL"
     gene            complement(3769..5583)
                     /locus_tag="VLI40_01945"
     CDS             complement(3769..5583)
                     /locus_tag="VLI40_01945"
                     /inference="COORDINATES: protein motif:HMM:NF014052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HSU95958.1"
                     /translation="MTTPESVATAPPFVPASSLDISLDVETPEQIALSYSIAGIGSRG
                     AAAAIDTLISFAILVAMTAILLIAAGHFATKPVKTSPSSAWVLAFYVIAQFVIMWGYY
                     VIFEGIWDGQTPGKRIMKLRVVRDGGFSVTFGASAVRNLLRVVDAFGVYLVAIVVALM
                     NSSRKRLGDIVAGTFVVKEERARPSSSPLPTVVQNRNLFARLSDDEYSVLERYVERRG
                     TIDPTHRDAIVAQLASKFAEHLPAATAPRGALVRLYESERDARASGVAARSDTGARRE
                     QHAIVALGLKRWNDFGAALDAAYEKGLSRMAPEDVSALVARYREIATDLARLQTASRG
                     RNSESLFYVSRLVARGHNLLYRQRRRTLAAAFDYITNTVPSEVRRSWRPIALAALLLF
                     GPAAAAYTTIVRDPGVASQILPDEMISRATTGSEREKRGEGYVSIPEEIRPVVASRII
                     SNNVTVTYLTFAMGLTAGIGTILMLIFNGVAIGSGVGLFASRGVARLILAFIAPHGVL
                     ELSAICIAGGGGLLIAKGILLPLNRTRRDALVENGKRAIDLIAASTLLLLVAGTLEGL
                     VSPRVWPLSWKLTISGVTALLMLGYLSLGRRVKAQTVP"
     gene            complement(5580..>5811)
                     /locus_tag="VLI40_01950"
     CDS             complement(5580..>5811)
                     /locus_tag="VLI40_01950"
                     /inference="COORDINATES: protein motif:HMM:NF024045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95959.1"
                     /translation="APLDAPILTKERQRFCVEQARAEMVAFAAAIGDGGLPSSVAAVH
                     LRSAVNALADVTGTIDVEDVLDRLFRNFCVGK"
BASE COUNT         1085 a         1961 c         1625 g         1140 t
ORIGIN      
        1 acacgctcgt acgaaatggt gatctacggc atcggtacct gcgacaggga ccgcttcacc
       61 acgttgaacg ctctggcagc cagcctcctg caggcgatcc cgtcgggatc tgccgcgaac
      121 ggtgctccgc gtactgcgtc ccgtgtcacg ccatgagtac agcgtcgcgc gtcgggggat
      181 ccgagacgcg aaccggcggt agtgtgttta cccccgtgcg cgttctctca gccgccgcgg
      241 ctctgctcgc actcttcatt ctcctcgcac ctcaggaacg agaagacgtg ggtgcagcgt
      301 acagttccta cgcagtcgga gccggcggcg ccagagcact ctacgaaaca ctcggcagac
      361 tcggcttcgt cgtgagccgc aacgaagtgt cgcttgcttc agcccccata tctgattcga
      421 cttcagccta cgcgctcata caacccgcgc aaccgcttac aactatcgaa cggacgcaac
      481 ttctggccgc cgtacgccgc ggcctggttc tcatattcac ccctgatgac gacgagcttg
      541 cggattcact cggcttcgag ctcaggtcga cgcccggtgc cttctacacg ttgagccgaa
      601 ccactgtcgc cggtggcaat cctccagctc cggcgaccca ggatccgcgc gcagcctttc
      661 aggaggcgtt tccaatatcc gtaaccgtcg cgtcaaaatc gaagtcgggc aaccagacat
      721 ttctctggct gcagtcattg tccgccgtcg atcaggcaac atcagactcc gctcagcgtc
      781 ccgcattggt gctcggacac agattcggtc gcggttacgt gatagccgtc gcgccggctc
      841 agattctgat gaaccaggtc atgcgtcagc cccgggctgc catagcagtc gtgcgcgcac
      901 ttcaattcgc gaatggttca gcttctccca ccgcacggtc gccacgcgtg gtcttcgacg
      961 agtatcatca cggcttcgga gctcacgctg acatgccggc agccatagta cacgcgctga
     1021 ctgacactcc gccggggcgc gtggcgctgg aaatcacagt ggcagcactg gtgcttcttc
     1081 tggcatttgc cgtacgacca cttgccccgg taccgattcc tccgatctcg cgccgatctc
     1141 ccctcgagca cgttggagcg cttgcgcacg cgtactcgca gatcgacgct cgccgcctcg
     1201 gtaccagcat gctggtgcgc ggtctcagac gtcgacattc acttggcttg cctcgctcag
     1261 catcaagtac gacttatctg tccgcgttgc gcgatcggct tcccggagcg tccgccgatg
     1321 tggatcgcat cgtgaccgct cttgcaccgg attcaccaac ttcatccgac catttcgccg
     1381 ttaccggcgc ggcggtcgcg aacatcgaga gggcttttcg agagtgactg acctcaccgc
     1441 tacatccgcc gcgctccagc gcatccgcga aactgtcgcc gcccgtgtcc tcggacagga
     1501 agaggtgatc gaccagatac tcgcggcatt cgttgcccgg ggacacatac tgctcgaagg
     1561 cgttcccggg acggcgaaaa cgttactcgt ccgggtactt gccggcgccc tggatgtccg
     1621 ctttggacgc gtccaattca ctcccgatct catgccctcc gacgtcgccg gagtaagtgt
     1681 ctatcaggaa tcgtcgcgcg cattcgagtt tcgtcccggc ccgatattca ccgatctcct
     1741 tctggcggat gagatcaacc gcgcgcccgc caaaacgcag tcggccttgc tcgaggcgat
     1801 gcaggaacga caggtcactg tcgatggtgt gacgcattca ctcggcgaca tgttcagcgt
     1861 attcgcgacc cagaatcccg tggaatacga gggaacatat cctctccccg aagcacagct
     1921 ggaccgtttc ctcgtcaacg tgcgaattgg ctatcctgca agaggcgccg agctcgcgat
     1981 gcttgcgaat tattctgaag gattcgatgc agagcgcgcg agtaccttca tgcctgcgcc
     2041 cgtcgtgtca gctgcggagg tgttacagct ccgcacgatg actgatagtg tcaatgtgac
     2101 agtcgaggtc cgcgagtaca tcaccgacat cgtgcgcgcc acgcgcgagg acacgtcact
     2161 catgctcggc gcatcaccgc gcgcggccgt tgcacttttc cgcatagcgc gggctgccgc
     2221 actcgtcgcg ggccgtgact tcaccacacc ggacgatgtg aaacaacacg ctctgccggt
     2281 gttgcgtcac cgtattcttc tgtcgcccga gctgcaggtg gaaggccgct ccaccgatga
     2341 cgtgatcacg gcgattctgg cccgggtgcc ggcaccacaa tgagcgctgc gtcagaccgc
     2401 gcaatccagg tgcagtcgcg atgacgccat cgcagttgat tggccgcatt accaggccat
     2461 tgcgattgct cgcgcgatac gcaccgacgc cgaggctggc actggtgatt gcgatagctg
     2521 caccggtttg ggtcttttca tccggcacgg ctggtcaggt cgtcgcgact gcaatagctg
     2581 caatcatcgt gatcgcagcc ctcgccgatg cactccggat tccaggagct cgctacgtcg
     2641 cactcgaacg cgattttcct gcagcaatcg gtgtcgctga caccaggtcg ggaaggtaca
     2701 cgatcacgtc gtcgtggccc gcctcgctga gcgtctcgat aactcaacag cttccttccg
     2761 gtgtcaccac gaccggcctt cacctggaca aactggagct cggtcccaac gcgccattgc
     2821 tcgtcgacct ggctatcacg ggacggtctc gcggcacatt ttcgcttggt ccggtcgcgc
     2881 tcaccgttcc cggcccgtgg aagctcattc gccgatcgat aatttattat cctaacgata
     2941 ctatttctgt aactccctcc atggccaatg ccggccgcta ccgcctcctt gccgcacagc
     3001 atcgggtgag aactgcgggc cagcgcgtga tccgtcgccg cggtgccgga acatcgttcg
     3061 ccaatctccg tgactacgta ccgggcgatg atccgcgccg catcgattgg aaggccactg
     3121 cccggcgcca ccgtctcatc tcgcgcgaat tcaccgtgga gcagggccag acgatcatga
     3181 tcgcgatcga ctgcggcaga atgatgactc agctcgctgg cgaccggccg cgcttcgagt
     3241 acgctcttgc atccgcgctg acactcgccg acatcgctct ctccaccggc gatcgcgtcg
     3301 ggctcattgt cttcgactcg cttgtccgcc gttacattgc accgacgcgc gccccgggca
     3361 ccctcggtgc cctccgggat gcactgaccg gcgttaccgc aacgatgacc gagccggatt
     3421 atgcagccgc gttccgtacg ctcaccgaac gcaatcgccg tcgctcgctc atcgtcctgt
     3481 tcaccgatgt gatcgatgtc cgctcctcgc gcgccgtcat agcactgacc gtgcgaagcg
     3541 cggaacgcca tctgccactg gttgtcgcac tgcgcaacga acagctggtc atggcgtccg
     3601 tcccttcccg agacgccagc gatgagcaga cctatgagag cgccgctgcc gaggagcttc
     3661 tttcggcacg ggatgaagcg cttcagatca tgcgtcaggc cggagttgcg gttctcgaca
     3721 ccgcaccgac cggcatgaca gcggctctca tcaaccgcta cctggaaatc aaggaacggt
     3781 ctgcgctttg acccgtcgtc ccagcgacag gtagccaagc atcaacagcg ccgtaactcc
     3841 ggatatcgtg agcttccagc tcaacggcca tactctcggc gataccaacc cttccagagt
     3901 cccggcaacg agcagcagca acgtcgacgc ggcgatgaga tcgatggcgc gcttcccatt
     3961 ctcgaccagc gcgtcacggc gcgttcggtt gagcggaagc agaatccctt tcgcgatcaa
     4021 caagccaccg cctcctgcga tgcagatcgc actcagctcg agcacgccgt gcggcgcgat
     4081 gaacgcgaga atgagtctgg ccactccacg cgacgcgaac agaccgacgc cgcttccaat
     4141 tgcaacgcca ttgaagatga gcatcaggat cgttccgatt cctgccgtca accccatcgc
     4201 gaaggtgagg tacgttaccg tcacattatt cgagatgatc ctgctcgcga cgaccggccg
     4261 aatctcttcc ggaatggata cgtaaccttc tccgcgtttt tcccgctcgc tgccagtcgt
     4321 cgccctgctt atcatctcgt ccggtaatat ctggctcgca acccccggat cccgaacgat
     4381 ggtggtatat gcagccgcag ccggcccgaa caacaacagc gcggccagcg cgatcggtcg
     4441 ccacgatctc cgcacttccg aaggtacggt gttcgtgatg taatcgaacg ctgcagccag
     4501 tgtgcgcctg cgctgccggt acagcagatt gtgtccgcgc gcaaccagac gactcacgta
     4561 gaacagggat tcgctgttcc gtccgcgact cgctgtctgc aaccgcgcca gatcggtcgc
     4621 tatctcccta taccgcgcca caagcgcaga tacatcttct ggcgccatcc gcgacagccc
     4681 tttctcgtag gcagcgtcga gcgctgcccc gaaatcattc cagcgcttga gacccagggc
     4741 gacaattgca tgttgctctc gccgggcgcc ggtgtcgctc cgcgctgcaa caccgctcgc
     4801 tcttgcgtcg cgctcggact cgtacaatcg cacgagcgct ccacgcggcg ctgttgccgc
     4861 cggcagatgc tctgcgaact tgctcgccag ctgtgcgacg atcgcgtccc tgtgcgtggg
     4921 atcgatcgtg ccacgtcgct cgacatatcg ctcgagcacc gagtactcat cgtcgctgag
     4981 acgagcgaac aggttgcgat tctgtaccac tgtcggcaat ggcgaggagc tgggtcgcgc
     5041 acgctcctcc ttcacgacga acgttccggc gacgatgtca ccaagccgct tgcgcgagct
     5101 gttcatgagt gcgacgacaa ttgcgacgag atagaccccg aacgcgtcga cgacccgcag
     5161 cagattccgc accgcggacg cgccgaacgt gaccgagaat ccgccgtcac ggacgacgcg
     5221 tagcttcatg atccgctttc cgggagtctg gccatcccag attccctcga atatcacgta
     5281 gtaaccccac attatcacga attgcgcgat gacgtagaac gccagtaccc acgccgacga
     5341 aggactcgtc tttacaggct ttgtggcaaa atggccggcc gcgatcagca gtatcgccgt
     5401 cattgcgacg agtatcgcga agctgatcaa cgtgtcgatc gccgcggcag cgccacgcga
     5461 tcctatcccg gcaatggaat aggatagagc gatctgctcc ggcgtctcca catccagcga
     5521 gatatcgagg ctggacgccg gcacgaacgg tggcgctgtc gcaactgatt cgggagtcgt
     5581 catttaccta cgcagaagtt tcggaagaga cgatccagga cgtcctcgac gtcgatcgtg
     5641 ccggtcacat ccgccagcgc gttaaccgca ctgcgaagat gcaccgccgc gacggatgac
     5701 ggcaatccgc catccccgat tgccgccgcg aaggcgacca tctcagcccg tgcctgctcc
     5761 acgcagaaac gctgccgctc cttggtaagg atgggagcat ccagcggtgc t
//
LOCUS       DATIMD010000085         2363 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_322544, whole genome shotgun sequence.
ACCESSION   DATIMD010000085 DATIMD010000000
VERSION     DATIMD010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2363
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322544"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(129..1652)
                     /locus_tag="VLI40_01955"
     CDS             complement(129..1652)
                     /locus_tag="VLI40_01955"
                     /inference="COORDINATES: protein motif:HMM:NF012640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HSU95960.1"
                     /translation="MDFDRFRAHATTAGLIPVWRDVLLDVDTPVSAFAKLRRGGFAFL
                     LESAPAGSETWSRYTFMGTEPRSAWSLSDGVVTDWSPSHGWHTQRQVADPLADLERLV
                     MEHVPARVPELGVFWGGAVGYLGYDVVRAIESLPNPPLKKLDIPDALFVFTRGLVVID
                     NLRSQGRLIVSVQVPRDASEYELRELYDEAQSELDAIATRLLDPSPLEPLSLGAPATA
                     LIGQSNYAHDRFIADVERIKEYIRAGDCFQCLLARRIDVAHDFDSSDLYRALRALNPS
                     PYMYHLDLDGTELVGSSPELLVRLANRQVTVRPIAGTRPRGRTAEEDERMTIDLLADE
                     KERAEHVMLVDLGRNDVGRVAEYGTVTVSDFMCVEKYSHVLHIVSQVDGTARPAIGVA
                     DVLRATFPAGTMTGAPKVRAMEIIDELEPERRGAYAGAVGYIAWGGERIDLAITIRTC
                     VIANGIASAQAGAGIVADSVPESEWIETENKARAVLTAIAQVRSKTAQPHIVAQDGG"
     gene            1680..>2363
                     /locus_tag="VLI40_01960"
     CDS             1680..>2363
                     /locus_tag="VLI40_01960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95961.1"
                     /translation="MTTGLVILLAPVAIAAQDWNSARAESLATHATAVRAAQLADSGL
                     KSYKAEARGYLTFLAQLGKGFPDPPKIVRADQIASDIYWKAPSLSKQLIKGRRDTLVL
                     PTDINYHRDHLGIVQNNFPSFIRIGDGDEVQDVPHPLSASGLNDYDFAVGDSLQIRLG
                     DRTLDVVQLRFRPRNQNAARAIGSVYVDRESGSVVRMAIEFTRAAYRDKDLEDNSVVL
                     ESGLIDGRFW"
BASE COUNT          445 a          740 c          746 g          432 t
ORIGIN      
        1 agcatacgag tacagcgtgt cgtgctccag aatcgtgcgc gtggtttccg ccatcgcgcg
       61 cgcaacgaga atgtcggcgc cgtcaaccgt tatgtgctcg tagccggtga tcgggatcag
      121 ttccgagctc atccgccatc ctgcgcgact atgtgcggct gtgcagtctt gctgcgcacc
      181 tgtgcgatag ccgtcaacac cgcgcgtgcc ttgttctcag tctcgatcca ctctgattcc
      241 ggaacggaat ccgcgacgat tcccgcgcct gcctgcgcgg aagcaatgcc gttcgcgatc
      301 acgcacgtgc gaatcgtgat cgcaagatcg atgcgctcac ctccccatgc gatgtagcct
      361 accgcacctg cgtaggcacc gcgacgctcc ggctccagct cgtcgatgat ctccatcgcg
      421 cgtaccttgg gcgcgccggt catcgtgccg gcggggaatg tggcgcgcag cacgtcggcg
      481 acgccgattg ccggacgtgc ggtaccatcc acctggctca cgatgtgaag cacgtgcgag
      541 tatttctcga cgcacatgaa gtcactcaca gtcacagtgc cgtactcggc gacacgcccg
      601 acatcgttgc gcccgagatc gaccagcatc acatgctcgg cgcgctcctt ctcgtcggcg
      661 aggagatcga tcgtcatgcg ttcgtcctct tcagcggtcc tgccgcgcgg gcgagtaccc
      721 gcgatggggc gaactgttac ctgacgattg gcgagtcgca ccagcagctc gggcgagctg
      781 ccgacgagct cggtgccgtc gaggtcgaga tgatacatgt atggcgacgg attcagggcg
      841 cgcagtgcac gatacaggtc cgagctgtcg aagtcgtgcg cgacgtcgat gcggcgggcg
      901 agcaggcact ggaagcagtc gccagcgcga atgtattcct tgatgcgctc gacgtcggcg
      961 atgaatcggt cgtgcgcata gttcgattgt ccaatcagcg ctgtcgcggg cgcgccgagc
     1021 gagagcggct ccaggggcga cgggtccagt aaacgcgtcg cgatcgcgtc gagctccgac
     1081 tgggcttcat catacaattc ccgcagttca tattcgctcg catcgcgcgg cacctgtacc
     1141 gacacgatca gtcgtccctg tgagcgcaga ttatcgatca cgacgagacc acgcgtgaaa
     1201 acgaacagtg cgtctggtat gtcgagcttt ttgagtggcg gattcggaag cgattcgatc
     1261 gcgcgcacca cgtcgtagcc gaggtagccg accgcgccgc cccagaagac acccagctct
     1321 ggtacccgcg cagggacatg ctccattacg agccgctcca ggtcagccag cgggtcggcg
     1381 acctgccgtt gcgtgtgcca gccgtgggat ggcgaccagt ctgtgacaac cccgtccgac
     1441 agcgaccacg cggagcgcgg ctcggtgccc atgaaggtgt agcgagacca cgtttcgctg
     1501 cccgccggag ccgactccag aaggaaggcg aaaccgcccc tccggagctt ggcgaaggct
     1561 gaaacggggg tgtctacatc cagcagcacg tcacgccaga cgggaatgag ccctgccgtg
     1621 gttgcatgtg ctcggaaacg gtcgaaatcc atgcgttaag ttgagggatg aagcgcacca
     1681 tgacaacggg gctggtcata cttctcgctc ccgtcgccat cgccgcccag gactggaact
     1741 ccgcgcgcgc cgagagcctc gcgactcacg cgaccgcagt acgggccgct cagctcgccg
     1801 atagcggatt gaaaagctac aaggccgagg cccgcggtta tttgacattt cttgcccagt
     1861 tgggcaaggg ttttcccgac cctccgaaga tagtccgcgc ggaccagatc gcatcggata
     1921 tctactggaa agcgccgtcg ctcagcaaac agttgatcaa ggggcggcgt gatacgctgg
     1981 ttctgccgac cgacatcaat tatcaccggg accacctcgg gatagtgcag aacaacttcc
     2041 cgagcttcat cagaatcggc gacggtgacg aggtgcagga cgtcccccat ccgctatcgg
     2101 catccgggct caacgattac gactttgcgg tgggcgactc gttgcagatc cggctgggcg
     2161 accgtacgct ggacgtcgtg cagctgcgct ttcgtccgag gaatcagaac gcagcgcgcg
     2221 ccatcggatc tgtgtacgtg gacagggaga gcggctcggt ggtgcgcatg gcaatcgagt
     2281 tcacgcgcgc tgcataccgg gacaaggacc tggaggacaa ctccgtcgtg ctcgagagcg
     2341 gtctgatcga cgggcggttc tgg
//
LOCUS       DATIMD010000086         2092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2632406, whole genome shotgun sequence.
ACCESSION   DATIMD010000086 DATIMD010000000
VERSION     DATIMD010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2632406"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..205)
                     /locus_tag="VLI40_01965"
     CDS             complement(<1..205)
                     /locus_tag="VLI40_01965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HSU95962.1"
                     /translation="MTNDIAAENKALIRRFYNEVYVDWNMTLVDEVVAPQFTSHDWPD
                     GATGPQAFRKYYAAIRSAVPDARY"
     gene            complement(226..726)
                     /locus_tag="VLI40_01970"
     CDS             complement(226..726)
                     /locus_tag="VLI40_01970"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HSU95963.1"
                     /translation="MTESSLTTITEAPVVIEPRMTNPAADIPEVLEGIQKLLVAVRKG
                     GLPASVLELTHMRTSQINGCSSCIEGTIRHAHRVGEDLDERLLMVAAWRHSSQFTEAE
                     RAALELTEEITRLADRSDPVPDEVWARATEHYDERALAALVLHVALVNLFNRLNVSTR
                     QPAGNW"
     gene            807..1691
                     /locus_tag="VLI40_01975"
     CDS             807..1691
                     /locus_tag="VLI40_01975"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSU95964.1"
                     /translation="MDEHEMLAQQFETYRDKLHSAAYRMLGSTAEAEDAVQEAWLRVS
                     NAGTDGVDNLGGWLTTVVGRVCLDKLRARRAHAEESLDGHEPEPDMQRRHEWSPETDV
                     ELADSVGLALLVVLEALQPAERVAFVLHDMFDLTFDEIAPIVGRTPVATRQLASRARH
                     RVQGVSTSDIDRSRKQEVAEAFIAAARGGDFEALVAVLDPDVVLRGDAAAIQLAGSVV
                     GIRGAASVAEFFKGKAQACVPALVDGDVGLMVPLDGRILVVLELRFVDGKISAIDAVA
                     DRDSIAALELEQLSWKTL"
     gene            complement(1824..>2092)
                     /locus_tag="VLI40_01980"
     CDS             complement(1824..>2092)
                     /locus_tag="VLI40_01980"
                     /inference="COORDINATES: protein motif:HMM:NF024307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3830 family protein"
                     /protein_id="HSU95965.1"
                     /translation="WVPLGDYQLGVGYENHTSHPSRGDLLWYPGGISETELLFAYGSS
                     LFASKVGQLAGNHFLEIVEGGERLGEMGRYVLYHGAQDIVFEAV"
BASE COUNT          393 a          631 c          653 g          415 t
ORIGIN      
        1 cgtatcgcgc gtccggaacc gccgatcgga tcgctgcgta gtatttccgg aacgcctgtg
       61 gaccggtcgc accgtcgggc cagtcatggg acgtgaattg cggtgcaacg acctcgtcca
      121 ccagtgtcat gttccagtcg acgtaaactt cattgtagaa tctgcggata agcgccttgt
      181 tctccgccgc gatatcgttt gtcatttttg ctcctcgcga attgattacc agttgccggc
      241 cggctgacgc gtgctgacgt tcagtcggtt gaacagattc accagcgcca cgtgcagcac
      301 gagcgcggcg agcgcccttt catcgtagtg ttcagtggcg cgagcccaga cttcgtccgg
      361 caccgggtcg ctcctatcgg ccagtcgcgt aatttcctcg gtgagctcca gcgcagcgcg
      421 ttcggcttcc gtgaattgcg aggagtgccg ccaggccgcg accatgagca gtcgttcatc
      481 gagatcctca ccgaccctgt gcgcatgtcg aatcgttccc tcgatgcacg agctgcatcc
      541 gttgatctga ctcgttcgca tgtgcgtgag ctcgagcacg ctcgcgggaa ggccgccctt
      601 ccggaccgcg accagcagct tctgaatgcc ttcgagtact tcgggaatgt ctgccgcggg
      661 attggtcatc cggggctcga tgacgaccgg cgcctcggta atcgtagtaa gtgatgattc
      721 agtcattgtt gtctccgttt tctgtcacat cgggtgaacc agctacgtca tattcagtga
      781 cgaaaccaga atgaagagtg tgacagatgg atgaacacga gatgctcgcg cagcaattcg
      841 agacctaccg cgacaagctc cacagcgccg cctaccgcat gctcggctcg acggcggaag
      901 cggaggacgc cgtacaggag gcgtggctgc gcgtgagcaa tgctggcacc gacggtgtcg
      961 acaacctggg cggttggctg actaccgttg tcgggcgcgt ctgtctcgac aagctccgcg
     1021 cacgcagagc acacgcggaa gagtcacttg acggtcacga gccggagccg gacatgcagc
     1081 gccggcacga atggagtccc gaaacagacg tcgagctcgc cgactcggtg ggactcgcac
     1141 tgctcgttgt gctcgaggca ctgcagccgg cggagcgcgt ggcgttcgtg cttcacgaca
     1201 tgttcgatct cacgtttgac gagatcgcac cgatcgtcgg acgcacgcca gtggctacgc
     1261 ggcaactggc cagccgcgca cggcatcgtg tgcagggcgt gtctacgtcc gacatcgatc
     1321 ggagcaggaa gcaggaggta gcggaagcat tcatcgccgc cgccaggggc ggcgacttcg
     1381 aagcgttggt agcagtgctc gatcccgacg tcgtcctgag gggcgacgca gcagcgattc
     1441 agctcgccgg ctcggtggtc gggatacgcg gcgccgccag cgtcgcggag ttcttcaagg
     1501 ggaaggcgca ggcgtgcgtg cctgcgctcg tcgacggcga cgtcgggcta atggtgccgt
     1561 tggatggtcg gatacttgtc gtgctcgagc tcagattcgt cgacggaaag atcagcgcga
     1621 tagatgcggt ggcagatcgc gactcgatcg cggcgctgga actggagcag ttgagctgga
     1681 agacgctata aagaccacgg tcagagtgaa cttcctggcg gctacagttg gcgtttgcta
     1741 caaggaatgc agcctgtagc gaattcacac ggagtccgtc cctgctccgt ccctgctccg
     1801 tccctgctcc gtccctcatg gaatcacacc gcttcgaaca cgatgtcctg cgcgccgtga
     1861 tacaaaacgt agcgccccat ctctccgagt cgttccccgc cttcgacaat ctcgagaaaa
     1921 tgatttcccg cgagctgacc gactttgctt gcgaagagcg acgaaccata tgcgaacagc
     1981 aactccgttt cgctgatgcc acccggatac cagagcagat cgccgcgcga cggatgactc
     2041 gtgtggttct cgtagccgac gccgagttga tagtcgccga gtgggaccca gc
//
LOCUS       DATIMD010000087         3665 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1478070, whole genome shotgun sequence.
ACCESSION   DATIMD010000087 DATIMD010000000
VERSION     DATIMD010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3665
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1478070"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(244..318)
                     /locus_tag="VLI40_01985"
     tRNA            complement(244..318)
                     /locus_tag="VLI40_01985"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(281..283),aa:Asp,seq:gtc)
     gene            complement(420..491)
                     /locus_tag="VLI40_01990"
     tRNA            complement(420..491)
                     /locus_tag="VLI40_01990"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(456..458),aa:Glu,seq:ttc)
     gene            complement(515..587)
                     /locus_tag="VLI40_01995"
     tRNA            complement(515..587)
                     /locus_tag="VLI40_01995"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(551..553),aa:Glu,seq:ctc)
     gene            766..3084
                     /locus_tag="VLI40_02000"
     CDS             766..3084
                     /locus_tag="VLI40_02000"
                     /inference="COORDINATES: protein motif:HMM:NF006101.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003959 - NADPH dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional salicylyl-CoA
                     5-hydroxylase/oxidoreductase"
                     /protein_id="HSU95966.1"
                     /translation="MRVVTIGGGPAGLYFALLLKKAHPGHDVTVLERNAPGVTFGWGV
                     VFSDQTLENFRNADEETYNRIVEHFAHWDDIDVVIGDTTITSGGHGFSGIARRTLLDI
                     LCSRATSLGVDVRFNCNVPRIAALDSIEGCSNADLLVAADGVNSAIRHERAAVFKPHL
                     DVRPAHFVWFGTTRPFDAFTFFFVQNELGVFQAHCYRFEEGLSTFIVECDDESWHRAG
                     FDGADTSTTIAICERMFGQWLDGHHLMSNATHRERSPWISFVRVTNERWFDDNVVLVG
                     DAAHTAHFSIGSGTKLAMEDAISLARAVSTRDSLHLPSALQAYQDERMIEALRLQNAS
                     RNSMEWFENVRRYIHLPPEQFAYSLLTRSQRVSHENLRLRDSAYLSGVERWFAARAGA
                     AASHPAGTDTGVTPPMFTPLTLRGMTLVNRIAVAPMDMYRSIDGLPGEFHTVHLGARA
                     LGGAGLIFTEMVCVSPEARITHGCAGMYTTAHASAWKRIVDFVHAESDARICLQLGHS
                     GRRGSTRLPWEASNASLEAGGWETIAPSAIPYAPANHTPREMTRADMDAVRDDFVRAV
                     RYGIDAGFDMIELHCAHGYLMSSFITPLSNHRDDSYGGSLENRMRYPLEVFVAMREAW
                     PADRPMSVRISATDWVEGGVDGAESVEIARAFVDAGADIIHVSTGETSLDAQPVYGRM
                     YQTPYSDRIRNEAGVRTIAVGNILNADQVNAIITSGRADICALGRPHLTDPNWTLRAA
                     AELGYADQSWTPSYYPARRQLERELEKQRSAG"
     gene            3081..>3665
                     /locus_tag="VLI40_02005"
     CDS             3081..>3665
                     /locus_tag="VLI40_02005"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU95967.1"
                     /translation="MTERIDDSPTDFLRERHAIITGGGHGLGGAIASALARAGANVTV
                     MGRDHVKLDECASELREQSRIEARAVVCDVTDPDSVSVAFAAATDALGPAHVLVNNAG
                     QARSASFVETSLDLWEHTIAVNLTGSFMCAQRVLPAMLRNRGGRIVNVASTAALRGYA
                     TLAAYCASKHGLLGMTRSLAAEVAQSGITVNAVCP"
BASE COUNT          726 a         1230 c         1049 g          660 t
ORIGIN      
        1 cgcgatgcct ttcagcacaa gcacctcaag cttgcgtgtc taccaatttc accacgaggg
       61 cggccttgaa acctgtcctt cagcatcaat atatccggct gtcacaccgg cccaaactgc
      121 aacgcaaacc gtaacgcaaa ctgcaacatg gattcccgct ttcgcgggaa tgacgaacct
      181 ctggattccc agggcgcaga tgaatccgcg ccctcctgcg ggaatgacga tctataaaaa
      241 atacggggcc gacgggggtc gaacccgcga cctctcgagt gacagtcgag tgctctaacc
      301 aaactgagct acggccccaa acacacaaaa cccacaaaac acgcacgcgc ggatgcctcc
      361 gcgccccacc ccgccaacca cgcgggccca acaacctaac caaactgcgc ccaaccctat
      421 agccccaagg ggaatcgaac ccctctctgc accgtgaaag ggtgccgtcc taaccgatag
      481 acgatggggc cgcgacggtc cgtccatggc aaaatagcgc taacgggatt cgaacccgtg
      541 tttgggcctt gagagggccc cgtcctggtc ccctagacga tagcgccgcg acaattattc
      601 cccggttcgc ccggagcctt gcaatatcgc cagttaccag cccggaaatc aacccgtacg
      661 aactcgatgt tttaggctta taatatctcc gcgccaccag caccctccgc acctgcccgt
      721 cccagccgta cctgttccgc ccctcggcct accatgagcc tataagtgcg cgtcgtcacc
      781 atcggcggcg gtccagccgg tctctatttc gccctcctcc tcaagaaggc gcaccccggg
      841 cacgacgtaa ccgtactcga acgcaacgcg cccggtgtca ccttcggctg gggtgtcgtc
      901 ttttccgacc agactctgga gaacttccgc aacgcggacg aggagaccta caacaggatc
      961 gtcgagcact tcgcccactg ggacgatatc gacgtcgtga tcggcgacac taccatcacc
     1021 tcgggcggac acggattcag cggcatcgcg cgccgtaccc tcctcgacat tctatgcagc
     1081 cgcgcaacgt cgctcggcgt cgacgtgcgc ttcaattgca acgtcccccg gatcgcggct
     1141 ctcgactcga tcgagggttg cagcaacgcg gacctcctcg tcgccgccga cggcgtcaac
     1201 agcgcgatca ggcacgaacg cgccgcggta ttcaagccac atctcgacgt gcgcccggca
     1261 catttcgtct ggttcggtac gacgcgcccg ttcgatgcat tcaccttctt cttcgtgcag
     1321 aacgagctcg gcgtgttcca ggcacactgc tatcgattcg aagaggggct ttcgaccttc
     1381 atcgtcgaat gcgacgacga atcatggcac cgcgccggct tcgacggtgc cgacacatcg
     1441 acgacgatcg cgatctgcga gcgcatgttc ggtcagtggc tggatggaca tcacctgatg
     1501 agcaacgcga cgcatcgcga gcgctcgccg tggatcagct ttgtacgcgt taccaatgag
     1561 cgctggttcg atgacaacgt cgtcctcgtc ggtgatgcag cccatacagc ccacttctcc
     1621 atcggctccg gcaccaagct ggcgatggaa gacgcgatct cgctcgcgcg cgcagtgtcg
     1681 acccgcgact cactccacct cccctccgca ctccaggctt accaggatga gcggatgata
     1741 gaagcgctac gtctccagaa cgcatcccgc aactcgatgg aatggttcga gaatgtccgg
     1801 cgctatatcc atctcccgcc cgagcaattc gcctacagcc ttctcacccg cagtcagcgc
     1861 gtcagtcacg agaatctccg tctccgcgac tctgcgtacc tgtcgggcgt cgaacgctgg
     1921 tttgcagcaa gagccggtgc cgcggcgtca cacccggctg gcacggatac cggcgtcacg
     1981 ccgccgatgt tcacgccgct cacactgcgc ggcatgacgc tcgtcaatcg catcgctgtc
     2041 gcgccaatgg acatgtatcg ctccatcgac ggacttccgg gcgagttcca cactgtccac
     2101 ctcggcgcac gtgccctggg cggcgctggc ctgattttca ccgagatggt atgcgtatcg
     2161 cccgaagcac ggatcacaca tggctgcgct ggcatgtaca cgaccgcgca cgcgtcggcc
     2221 tggaaacgca tcgttgattt cgtgcacgcc gagagcgatg ccaggatctg ccttcagctc
     2281 ggtcactcgg gtcgccgggg ctcgaccagg cttccgtggg aagcaagcaa cgcttcgctg
     2341 gaggccggtg gatgggagac catcgcaccg tccgcgattc cgtacgcacc ggccaatcac
     2401 acaccgcgtg agatgacacg agccgatatg gatgccgtac gcgatgactt cgttcgcgcc
     2461 gtacgctacg gcatcgacgc aggcttcgac atgatcgagc tgcactgcgc gcacggatat
     2521 ctaatgtcca gcttcatcac gccactcagc aaccatcgtg atgactcgta tggcgggtcg
     2581 ctggagaaca gaatgcgcta cccgcttgaa gtgttcgtgg ccatgcgcga ggcgtggccg
     2641 gccgatcggc cgatgtcggt ccgcatctcg gcgaccgact gggtcgaagg tggcgtggat
     2701 ggcgcagaat ctgtcgagat cgctcgcgct ttcgttgacg cgggtgcgga catcatccac
     2761 gtgtcgacgg gggagacgtc gctcgatgcg caacctgtct atggccggat gtaccagact
     2821 ccgtacagcg accgcattcg caatgaagcg ggcgtacgca ccatcgcggt cggcaatatt
     2881 cttaacgcgg atcaggtcaa cgcgatcatc acatccggac gcgcggacat ctgcgcactc
     2941 ggacggccgc atcttaccga ccccaactgg actcttcgcg cggcagccga gcttggatat
     3001 gcagatcaga gctggacgcc gtcctactac cccgcacgcc gtcagctcga gcgggaactg
     3061 gaaaaacaac ggagcgcagg atgactgaac gcatcgatga ttcgcccacc gactttctgc
     3121 gcgagaggca cgcgatcatc actggcggcg gccacggcct tggcggagcc atcgcgtccg
     3181 ctctggcccg ggcaggcgcg aacgtgactg tcatgggccg ggaccacgtg aagctcgacg
     3241 agtgcgcatc ggagctacgc gaacaatcgc ggatcgaagc gcgtgcagtc gtctgcgacg
     3301 tgaccgaccc ggattccgtt tcggttgcgt tcgcagccgc gacagacgca ctgggccccg
     3361 cgcacgtgct cgtgaacaat gccggtcagg cgcgaagcgc ctcgttcgtg gagacgtcac
     3421 tggacctctg ggagcacacg atcgcggtga atctgaccgg gtcgttcatg tgcgcgcagc
     3481 gggtgcttcc ggcgatgtta cgcaacagag gcgggcgaat cgtcaacgtc gcttccacag
     3541 ctgcgttacg cggttacgcg acgctggctg catattgcgc atccaaacac ggattgctgg
     3601 gcatgacgcg ctcgctggcc gcggaagtgg cacagtccgg catcaccgtg aacgccgtat
     3661 gtcct
//
LOCUS       DATIMD010000088         6110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5521403, whole genome shotgun sequence.
ACCESSION   DATIMD010000088 DATIMD010000000
VERSION     DATIMD010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6110
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5521403"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..1154
                     /locus_tag="VLI40_02010"
     CDS             69..1154
                     /locus_tag="VLI40_02010"
                     /inference="COORDINATES: protein motif:HMM:NF013586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HSU95968.1"
                     /translation="MLVTELAVRYGAGARRSVRNTLACAALLFTALGARSIAAQSSPG
                     LAPKAAPSAWMGLIGEYGDGDRMLVSERDGSLYATVEWLAPYPVRQISTDVFQWPHEG
                     LYGGSRVTFQRGANGRATQLTVGGIVYPRRQIGPESGTQLRITPVRPVEELRTIALAA
                     KPPVEPPSARKPDLVELTTLDSTIKLEIRYATTNNFLGSRMYTEARAFMQRPAAEAVV
                     RASRELHKRGYGLLIHDAYRPWYVTKIFWDATPADKKWLVANPAHGSMHNRGCAVDLT
                     LYDLKTGQPVEMVSTYDESTDRAYADYPGGTSLQRWHRALLRSVMEAEGFTANPQEWW
                     HFDYKDWHDYPIMNVTFEQISAAKGAH"
     gene            complement(1129..2100)
                     /locus_tag="VLI40_02015"
     CDS             complement(1129..2100)
                     /locus_tag="VLI40_02015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95969.1"
                     /translation="MDRIVIAWTLSAIAMTTWAAPAATQGSRPPLATSSSPTTQVEMR
                     NVDFYVDPEIVLHIHRLRGTIRSKGGGPVMFDDKRSLVIHLATGEVGLTASDITALLN
                     KYVFAYKGAPLSGLRVTIAGSQIVLTGILHKVAALPFTIRAEVSATPDGHIRMHPVQT
                     KIIGLGVTRLMRGLGMSLEKLVDLSKARGASAKGNDIYLAPDSILPPPAIEGRVTAVR
                     IVGNEMVQTFGGEGTPAQLSIPDPSQHNFMFYRGGTLRFGKLLMLDAEMQIVDLDPAD
                     PFRFNLDRYNEQLIAGYSRTLPDLGLEVYMRDIDKVKQSPSARPSLH"
     gene            2287..3474
                     /locus_tag="VLI40_02020"
     CDS             2287..3474
                     /locus_tag="VLI40_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010888346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSU95970.1"
                     /translation="MAASVSPSETVETVREEVIGWRRYLHQHPERSFHEERTSQWIAD
                     TLAGFGGLEITRPTPTSVLARLKGASPGPVLAIRADIDALPIEERNTHSFVSRNPGTM
                     HACGHDGHTAMLLGAVKVLVGRRDSFAGEVRFIFQHAEELHPGGAEELVKAGVMDGVD
                     LVIGAHLWTPLEVGKVGVKAGRLMAAPDIIRITITGSGGHAALPHQTVDPIAVAAQFI
                     TNLQHVVARNVDPLQPSVVSITRIAGGTTHNVIPGSVEMEGTVRTFEESLRTEMPRLI
                     ERILAGITSAHGASYTLSYERGYRPVVNDERASDLLRRAVVRALGEEALIEAVPCMGG
                     EDFSAYQQRAPGAFFFVGARCEEKGIVQPHHHECFDIDERALDYGTRTFVAAALDFLA
                     PHR"
     gene            3471..3707
                     /locus_tag="VLI40_02025"
     CDS             3471..3707
                     /locus_tag="VLI40_02025"
                     /inference="COORDINATES: protein motif:HMM:NF023183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3311 domain-containing protein"
                     /protein_id="HSU95971.1"
                     /translation="MRRYRWLAAIPTLGMLGGVPFANRVHPYVLGLPFLLAWIVVWVI
                     ITSLVMALIYLLDRRRDAEIAGATAAFSDNSSSS"
     gene            3704..5179
                     /locus_tag="VLI40_02030"
     CDS             3704..5179
                     /locus_tag="VLI40_02030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HSU95972.1"
                     /translation="MTPALVVIIGVFVIVIALGLMARRGHVMNLEQWSVGGRGFGTVF
                     VFLLMAGEIYTTFTFLGGSGWAYGKGAPAFYILCYGAIAYSVSYFLLPIIWRYAQTRK
                     LVSQADFFVAKYESKTLGVIVALVSVAALVPYLVLQLKGLGIIVSEASGGVITQAVAV
                     WTSSIALVGYVVVSGVRGSAWTSALKDAMILAVAVGIGVYLPLHYFGGYRAMFEAVEM
                     AKPGALTLPSSGMSPAWFISTVLLTATGFYMWPQFFAGVYTARNENVFRKNAVILPLY
                     QLVVLFVFFTGFAAMLVVPGLKGASADLSLLRIVEQSFGSWTVGVIGAAGLLTALVPG
                     SMILITAGTIISQNIYRVMAPRASDRTVSLVARSLVPVFTLAAVILTLRGGQTLVVLL
                     LMGYNFVTQLFPALILSLGERQRVSAASAIAGIVAGELTVVFLTVTNASVATLLPGAP
                     QVVKDLNVGFVALAVNAVVLTVVALATRVERPVVTEFVHNL"
     gene            complement(5154..5891)
                     /locus_tag="VLI40_02035"
     CDS             complement(5154..5891)
                     /locus_tag="VLI40_02035"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HSU95973.1"
                     /translation="MRIAVFADVHGNLLALEAVLADIASRSPDVTVNLGDCLSGPLQA
                     AATADLLMARDFLTIRGNHDRQLLDRPVEQMGAADQAADAQINDRHRAWLATFPATAV
                     LDDMFLCHGSPDSDLTYLLEHVGPHGAALAPPEQVRDLLRGVSQPVVLCGHTHFQRLV
                     TVTGGPLVINPGSVGLPGFYDDVPYPHVIQSGSPHARYAILDRTGEHWRVEFVAVEYD
                     WTSAAALAAKSGSPWTRAIATGYAQTP"
     gene            5884..>6110
                     /locus_tag="VLI40_02040"
     CDS             5884..>6110
                     /locus_tag="VLI40_02040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95974.1"
                     /translation="MRIPGNLADVLAGARRYGPLFADDIVQIEVETEMLGDRNALATI
                     AVSDIEVARKFYEETLGFQHKGPRRRGVLAY"
BASE COUNT         1133 a         1795 c         1927 g         1255 t
ORIGIN      
        1 gctcatggag cgcagcgtgg ctgacgcgct atcgcactac cgtatgacat cggaccgggg
       61 aaggtttcat gcttgtgact gagctggctg tacgatatgg cgccggcgcg cgccggagtg
      121 tgcgcaacac gcttgcatgc gcggcattgc ttttcaccgc actcggcgct cgctccatcg
      181 cagcgcagag cagccccggg ctggctccaa aggccgcgcc atctgcctgg atggggctca
      241 tcggcgaata cggtgatggc gaccgaatgc tggtctccga gcgggatgga tcgctctacg
      301 ccacggtcga atggctcgcg ccatatcccg tgcgccagat ttccaccgac gtgttccagt
      361 ggccgcatga ggggctgtat ggcggctcac gagtgacgtt ccagcgtggt gcaaacggtc
      421 gcgccacgca gctcactgtc ggtgggatcg tatacccgcg caggcagatc ggcccggaat
      481 ccggcacgca gctgcgcata acgccggttc gtccggtgga ggagcttcgt accatcgctc
      541 tggccgcaaa gcccccggtc gagccgccga gcgcgcgcaa gccggatctg gtcgagctga
      601 cgacgctcga ctccacgatc aagctcgaga tccgttacgc aaccaccaac aacttcctcg
      661 gtagccgcat gtacaccgag gcacgcgcgt tcatgcagcg gccggctgcg gaagcggtag
      721 ttcgcgcaag ccgcgagctg cacaagcgcg gctatggctt gctgattcac gatgcgtatc
      781 gtccatggta tgtgacgaag atattctggg acgcgactcc cgccgacaag aaatggctcg
      841 ttgcaaatcc cgcccacgga tcgatgcaca accgcggttg cgctgtggat ctcacacttt
      901 acgacctcaa gaccggtcaa ccagtcgaaa tggtcagcac atacgacgag agcaccgatc
      961 gagcgtacgc ggactatcca ggcggcacat cgttgcaacg ttggcacagg gcgttgctgc
     1021 gttcggtaat ggaggccgag ggcttcaccg cgaatcccca ggagtggtgg cacttcgact
     1081 acaaggattg gcacgattat ccgatcatga acgtgacgtt cgagcagatc agtgcagcga
     1141 agggcgcgca ctaggagatt gtttcacctt gtctatgtcg cgcatgtaaa cctccaggcc
     1201 aagatctggc agcgttcgcg aataacctgc tatcagttgc tcgttgtacc ggtccagatt
     1261 gaacctgaat ggatctgcgg ggtctagatc gacgatctgc atttcagcgt cgagcatgag
     1321 gagctttccg aagcgtagcg taccgccgcg atagaacatg aaattgtgct ggctcgggtc
     1381 gggaatgctg agttgagcag gtgtgccttc accgccgaac gtctgaacca tctcgtttcc
     1441 gacgatccgc acggcggtta cgcgtccctc gattgccggc ggcggcagaa tactgtccgg
     1501 tgcgagatat atgtcgttgc cttttgcgga cgcaccacgc gccttgctca gatctaccag
     1561 cttctcgagc gacattccaa gtccgcgcat cagacgagtg acaccgagtc cgatgatctt
     1621 cgtctgaact ggatgcatgc ggatgtggcc gtcgggcgtt gcactcactt ctgcccgtat
     1681 cgtgaacggc aacgcggcaa ccttgtgcag tatacccgtc agtactatct gtgaaccagc
     1741 gattgtgaca cgcaacccgg agagaggggc acccttgtac gcgaacacgt acttgttgag
     1801 cagcgcggtg atgtcgcttg cagtgaggcc aacctcacca gtagcgagat ggatgacgag
     1861 cgatcgcttg tcatcgaaca tcaccggtcc accgcccttg ctgcgtatgg ttccgcgcag
     1921 tcggtgaatg tggagaacga tctccgggtc gacgtagaaa tccacattcc gcatctcgac
     1981 ctgagtcgtc gggctgctgg acgtcgccag cggaggccgc gacccttgcg ttgccgcggg
     2041 tgccgcccac gtcgtcatgg cgatcgcgga caaagtccat gcaataacta ttcgatccat
     2101 agatattcag cgtaacccgt tcgagcagct atccaaacat tccgggcgcg gacagagcga
     2161 ttctcacggt gaagtgtacg ttgcgagctg tgaccgctcc ggcgtgacgg ccaggaggca
     2221 ttgcccaccc ctgttcaaca tgtgcgccag cctgtaacat ctaccgatct caggagggaa
     2281 ttttccatgg cggcttcagt ttcaccaagt gaaaccgtag agacggttcg cgaagaggtc
     2341 atagggtggc ggcgctacct gcatcagcac ccggagcgct cgtttcacga ggagcgaacc
     2401 tcgcaatgga ttgccgatac cctcgcagga ttcggcgggc tcgagatcac gcgtcccact
     2461 ccgacgagcg ttctggcgcg actcaagggc gcgagtccag gcccggtgct cgccatacgt
     2521 gcggacatcg atgccctgcc catcgaggag cgcaacaccc acagcttcgt ctcccggaac
     2581 cctggcacaa tgcacgcatg cggccatgat ggacacaccg cgatgctgct cggtgcggtc
     2641 aaggttctgg tcggccgccg cgactctttt gcgggcgaag tacggttcat cttccagcac
     2701 gccgaggagc tgcatccggg gggcgccgag gagctcgtga aggctggtgt gatggatggt
     2761 gtggatctcg tgatcggcgc gcatctctgg acaccgctcg aggttggaaa ggtgggggtg
     2821 aaagccggac gactcatggc tgcgcctgac atcatacgta tcacgatcac aggaagcggg
     2881 ggacatgccg cgttaccgca tcagactgtc gatccaattg ctgtagccgc gcagttcatt
     2941 accaatctgc agcacgtagt cgcgcgcaac gtcgatccac tgcaaccgtc ggtggtgtcg
     3001 ataacgcgta tcgccggtgg aacgactcac aacgtgatcc cgggctccgt cgagatggaa
     3061 ggtacggtgc gcacgttcga ggagagtctg cgcacggaga tgccgcggct catcgagcgc
     3121 attctcgctg gtatcacgtc ggcacatggc gcgagttaca cgctctcgta tgagcgtggt
     3181 tatcggccag tcgtgaatga cgagcgcgcc agcgacctgc tgcgccgtgc cgtggtgcgc
     3241 gcgcttggcg aggaggcact catcgaagcc gtcccgtgca tgggcggcga ggatttctcg
     3301 gcatatcagc agcgggcacc gggcgcgttc ttttttgtcg gcgcacgttg cgaggagaag
     3361 ggaatagtgc agccgcatca tcatgaatgc ttcgacatcg acgagcgcgc cctcgattac
     3421 ggaacgcgca ccttcgtcgc tgcagcactg gactttctgg cgccgcaccg atgaggcggt
     3481 atcgctggct cgccgcgatt cccacactcg ggatgctcgg cggcgtgcca ttcgccaatc
     3541 gcgttcatcc atacgtgctg ggtctccctt ttctgctcgc gtggatcgtt gtgtgggtca
     3601 tcataacgtc gctcgtcatg gcgctcatct acctgctgga ccgcagacgc gatgccgaga
     3661 tcgccggcgc gaccgcggca ttttctgata actcgagctc gtcgtgacgc cggcactcgt
     3721 cgtcatcatc ggcgtttttg tgatcgtcat tgcgctcggc ctgatggcac ggcgcggaca
     3781 cgtgatgaat ctggagcagt ggagtgtcgg cggccgtggt tttggcacgg tgttcgtctt
     3841 tctgctcatg gccggcgaga tctacaccac gttcaccttt ctcggcggta gtggttgggc
     3901 ttacggcaag ggcgcgccgg cgttctacat cctgtgctat ggtgccatcg catacagcgt
     3961 ctcgtatttc ctgctgccga taatctggcg gtacgcacag acgcgcaagc tcgtatcgca
     4021 ggcggatttc ttcgttgcca aatacgagag caagacgctc ggtgtcatcg tcgcgctcgt
     4081 cagcgttgct gcgttggtac cataccttgt gctccagctc aagggactcg ggataatcgt
     4141 ttccgaagcg tcgggcggag tgataacgca ggccgtagcg gtgtggacgt cgagtattgc
     4201 gctggtcgga tatgtcgtcg tttcaggcgt gcgcggatcg gcatggacat ccgcgctcaa
     4261 ggacgcgatg atcctcgcgg tcgccgtcgg catcggggtg tatctcccac tgcactattt
     4321 cggtggatat cgcgcaatgt tcgaggctgt cgagatggcg aagccgggcg ccctcacgtt
     4381 accatcgtcc ggaatgagcc ctgcgtggtt catctccacc gtgctgctca cagccacggg
     4441 attctacatg tggccgcagt tcttcgcggg cgtgtacact gcacgcaacg agaacgtatt
     4501 ccgcaagaac gcggtgatac ttccactgta tcagctggta gtactcttcg tgttcttcac
     4561 cggattcgcc gcgatgctcg tcgtaccagg gttgaagggc gcgtcggctg atctctcgct
     4621 attgcgtatc gtcgaacaga gtttcgggtc atggactgtc ggtgtgatcg gcgcggcggg
     4681 gctgcttacc gcacttgtcc cgggatcgat gatcctgatc accgccggca cgatcatctc
     4741 gcagaatatt tatcgagtga tggcgccgcg cgcgtcggac cggaccgtgt cgctcgtggc
     4801 gcggtcgctg gtgccggtat ttacgctggc cgctgtcatt ctgacgctgc gcggtgggca
     4861 gacgctcgtc gtgctcctgc tgatgggata caacttcgtg acgcaactct ttcccgcgct
     4921 aatattgagc ctgggtgagc gtcagcgtgt gagtgccgca agtgcgatcg cgggaatcgt
     4981 ggctggcgag cttactgtcg tttttctcac cgtgacgaac gcttcggtag cgacactgct
     5041 tcccggtgcg ccgcaggtcg tgaaggatct gaacgttggg ttcgttgcgc tggccgtcaa
     5101 tgcagtggtg ctgaccgtcg tcgcgctcgc gacgcgcgtg gagaggccgg tagttacgga
     5161 gtttgtgcat aacctgtagc aatcgcacgt gtccatggac ttcccgattt tgcggcgagt
     5221 gccgcggcgg aagtccagtc gtattcgacg gctacaaatt caacgcgcca gtgctcgccc
     5281 gttcggtcga ggatcgcgta ccgtgcgtgc gggctgccag actggatcac gtgtggatac
     5341 ggaacgtcat cgtagaaccc cggcaggccg acgctccccg gattgatgac gagaggacca
     5401 ccggtgacag tgaccaggcg ttgaaagtga gtgtgtccgc acagtacaac cggctgcgat
     5461 acaccgcgga gcagatctcg cacctgttcc ggcggtgcaa gcgcagctcc atgcggcccc
     5521 acgtgttcga gcagataggt gagatcactg tccggcgatc cgtggcagag aaacatgtca
     5581 tcgagtacgg cagtcgccgg aaacgtcgcg agccaggcgc gatgcctgtc gttgatctga
     5641 gcgtcggcgg cctggtcggc agctcccatc tgctctacgg gacggtccag taactggcga
     5701 tcgtgattac cgcggatcgt aaggaagtcg cgggccatga gcagatccgc cgtcgcggcg
     5761 gcctgcagcg ggccggagag acaatcgccg aggttgacgg ttacgtcggg cgagcgcgat
     5821 gcaatatccg cgagcaccgc ttccagcgcg agcaggttcc cgtgaacgtc agcgaagacg
     5881 gctatgcgca ttcccggaaa tttagcagac gtcttagcgg gcgcccgtcg ttacggcccg
     5941 ttattcgcgg acgacattgt ccaaatcgaa gtggagacgg aaatgctggg agacaggaac
     6001 gcccttgcca cgatcgcggt cagcgacatc gaggtcgcca ggaaattcta cgaggagacg
     6061 ctcggcttcc agcacaaggg tccgcggcgg cgtggcgtac tcgcgtacag
//
LOCUS       DATIMD010000089         2701 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5521566, whole genome shotgun sequence.
ACCESSION   DATIMD010000089 DATIMD010000000
VERSION     DATIMD010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2701
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5521566"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            367..618
                     /locus_tag="VLI40_02045"
     CDS             367..618
                     /locus_tag="VLI40_02045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95975.1"
                     /translation="MNESIQSPDIDEETYGLRDVEPEQRPENPAPRRRADSSVKLYVA
                     LWLPGAGALLAYAVTRGSFWAGFVGIELLLVGLYTLAKL"
     gene            645..1433
                     /locus_tag="VLI40_02050"
     CDS             645..1433
                     /locus_tag="VLI40_02050"
                     /inference="COORDINATES: protein motif:HMM:NF014453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HSU95976.1"
                     /translation="MNTGSYPVQEEQIVIPDEGARRGRASDRRTNPAGEAQTSARAER
                     VIAAQRSEALNRLLNVFIAVLALIVLGPVMVLIALAVKLTSRGPVFYVQDRVGVDRRR
                     RAVSPGEDRRRSNVGGRPFRILKFRSMREDAEAGTGAVWATQQDPRVTPVGDFLRKTR
                     LDELPQLINVVLGDMNIVGPRPERPSIFAELRENIDGYQLRQQARPGITGWAQINHSY
                     DSSLDDVRVKIQLDLEYLARQSLAEDLKIMMRTLPVMIFKRGSR"
     gene            complement(1556..1921)
                     /locus_tag="VLI40_02055"
     CDS             complement(1556..1921)
                     /locus_tag="VLI40_02055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95977.1"
                     /translation="MRRINIAACSLMLLAAASAPVMAQANTGGRMDPAQMVQRSTTRL
                     LTGITLTAAQTDSVKAINDRLATAATAETGGDMRAKMTEMRTNQRTQLRAILTPEQQT
                     VFDKNVADMDKARMNRPQP"
     gene            2122..2646
                     /locus_tag="VLI40_02060"
     CDS             2122..2646
                     /locus_tag="VLI40_02060"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HSU95978.1"
                     /translation="MTIRQAAVAIVLSAATMGDELLLVRRATVDGDPWSGHLALPGGR
                     REPVDATLEATARRETLEETGIDLSQSMCTARLTPVTPRSMAAPAITIAPFVFRYEGD
                     RGITMSREIVESWWIPLEQLRREDAWTTTPVTTRDGSAHLVRGFPWHGHVLWGLTERI
                     IYEFLATVKQGQPL"
BASE COUNT          493 a          765 c          884 g          559 t
ORIGIN      
        1 cggagtgcat aggctttttc gagcgaatag gatgcgtgcg cggaccgacc ggattcacgc
       61 ttaccgctcc caccccgcaa tgagcggacg cgtacgaaag gaccttgctg cgacgttcct
      121 gagaggccga ttcgtgatac caacagtcgt cggcatcgtc gtattggcag tagccatctg
      181 gctgattcgg ggccactgat caccgggcgg ggcgttagat ccacgacagg ctgaccggcc
      241 ggagcgctgt cgggaaccgg tgcagcggcc aaactcgggt agtgcggccc atccagtgtg
      301 gtggtactat acgtgctcgg tggctttcca ctggaaggtg ccccttccca ctcgaccggg
      361 ataactgtga acgagtcaat tcagtcgccg gatattgacg aggagacgta cggattgcga
      421 gatgtcgagc cggagcagcg gccggagaat ccggcgccgc gcaggcgtgc cgattcgagc
      481 gtcaagttgt acgtcgcgct ctggctgccg ggcgcgggcg cgcttctcgc gtacgcggtg
      541 acacgtggca gcttctgggc tggtttcgtt gggatcgagt tgctgctggt aggactatac
      601 accctcgcaa aactgtaagt gccgaaagct cgggaacgtc agcgatgaac accggctcct
      661 atcctgtgca ggaagagcag atagtgatcc ccgacgaagg ggcgcgtcgc ggtcgcgctt
      721 ccgaccgtcg taccaatcct gccggtgaag cgcagacgag cgcgcgcgcc gagcgcgtca
      781 tcgcggcgca gcgatcagaa gcgctcaacc gtctactcaa tgtgttcatc gcggtactgg
      841 cgctgatcgt gcttggcccg gtgatggtac tgatagcgct cgcggtgaag ctcacttcgc
      901 gcgggccggt cttctacgtg caggatcggg tcggcgtgga tcgtcgtcgt cgagccgtgt
      961 caccgggtga ggaccggcgc cgatccaatg tcggcggccg cccgtttcgc atcctcaaat
     1021 tccgttctat gcgcgaggac gcggaggcgg gaacaggtgc ggtgtgggca acccagcagg
     1081 atccgcgtgt cacgccggtg ggcgatttcc ttcgcaagac gcggctggac gagttgccgc
     1141 agctcataaa cgtcgtgctg ggcgacatga atatcgtcgg tccacggccg gagcggccga
     1201 gcatattcgc cgagctgcga gagaacatcg acggatatca gctgcggcag caggcgcgtc
     1261 ccggaattac gggttgggcc cagataaatc attcgtacga cagctctctc gacgacgtgc
     1321 gcgtgaagat tcaactggac cttgaatatc tcgcgcgtca gtcgctggcc gaggacctca
     1381 agatcatgat gcggacactt cccgtgatga tcttcaaacg gggctcgcgc tagctgcgca
     1441 cacgacggag tgttgtgacg gacagagtgt cgtgacggga gtatcgtgaa aggtggctac
     1501 atgataaaag agggatcgct tgatgcgatc cctcttttat catgtaaccg cagcgtcagg
     1561 gctgtggtcg gttcatgcgt gccttgtcca tgtccgctac gttcttatcg aacacggttt
     1621 gctgctcggg cgtgagtatc gcgcgaagct gagtgcgctg gttcgtgcgc atctcggtca
     1681 tcttggcgcg catgtcgccc ccggtttcgg cagtggcagc cgtcgccaga cggtcgttga
     1741 ttgccttgac cgagtcggtc tgagctgcgg tcagggtaat gcccgtcaga aggcgggtgg
     1801 tcgagcgctg taccatctgc gcaggatcca tccgtccgcc cgtgttcgcc tgcgccatta
     1861 ccggggcact cgccgcggca aggagcatca gtgagcacgc cgcaatgttg attcgccgca
     1921 tgtcgatacc tcttgaaggt gttgtgttat gtacgccgct gacagttgtc agcgaaatcc
     1981 gtaccctgcg acccgtagat gtacggtcag ccttgcagga cgttgtaact cgcgaagatg
     2041 aatgacgatc cggccgactt ccgccgtcgt ccacgcggtt ttacagttcg gaatgtccac
     2101 tatttgcgta atcgggacag catgacgatt cggcaggctg cggttgcgat cgtactctcg
     2161 gcagcaacga tgggcgacga gttgctgctc gtccggcgtg cgacggtcga tggtgaccca
     2221 tggagtggcc atctcgcgct gccgggtggt cgtcgcgagc ctgttgatgc tactctcgaa
     2281 gccaccgcgc ggcgcgagac gctggaggaa accggtatcg atctgtcgca gagcatgtgt
     2341 actgccaggc tgactccagt cacgccacgt tccatggcgg cacccgccat aacgattgcg
     2401 cccttcgtgt ttcgatatga aggtgacagg gggatcacca tgtcgcgcga gatcgtcgaa
     2461 tcgtggtgga tcccgctaga gcaactccgg cgtgaggatg cgtggacgac gactccagtc
     2521 accacacggg atggctccgc gcacctggtg cgtggttttc catggcacgg tcacgtgctg
     2581 tggggattga cggagcgaat tatttacgaa tttctagcaa cggtgaagca ggggcagccg
     2641 ttgtaacatc tgttgtgaca gtcgctctta tcagcggcgc gtcactccga cagtgcgccg
     2701 a
//
LOCUS       DATIMD010000090         2377 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3789130, whole genome shotgun sequence.
ACCESSION   DATIMD010000090 DATIMD010000000
VERSION     DATIMD010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2377
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3789130"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..1905
                     /locus_tag="VLI40_02065"
     CDS             187..1905
                     /locus_tag="VLI40_02065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95979.1"
                     /translation="MPGTRWVFSICCLIVPATAQPQLTRGDSLRILSEAHSAQSRFER
                     GRRESLPRIDEPENHPCETVIGRMCHWRDDGSLKPRPEPGSILRARQSLIATLAHLNA
                     ISPGDNWIAGERVRYMIEAGEDSAAVSVARSCAPPRWFCKALLGYALHASERYGDAAA
                     AFDSALAQMPADERCRWNDISVLLDDDERARYDALPCGQRDSVEQRFWDLAQPSFAVR
                     GNDRRTEHFSRVLVADLSETAENAYGLQWGPDMREMLIRYGESLWYSVSWPGPYTTFQ
                     TPIGHDRLPSFHFAAEMKGDSARWDTDAPVARELYAPPYIDTLAPLDAQFAMMKRGDS
                     ALVLAVYSDTTLGSAMLGVSGTSGDTIGASAHHGRVRRAHSRWKGEVVAMEAFDPVRL
                     RDARAREWLAPPHHGIGAPDLSTLLLFSADTSATVESLDDALAHALTSSDLRGARRLG
                     LYWEEYGVTRPDSSSGPHVSATDADSQSVGVPDSSSDSSSVLVTVNRIDGGALRWLGQ
                     ALHITRRDSPLAVRWHDTYASTGIASHSVVLDLAQLPAGTYQVSVAVGADDAHRTQIS
                     RVIRLR"
     gene            complement(1938..>2377)
                     /locus_tag="VLI40_02070"
     CDS             complement(1938..>2377)
                     /locus_tag="VLI40_02070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95980.1"
                     /translation="TDSSHRVQPPTVLRKGTLVRVDQEHEWVIGTLVRPFAVTRTDTV
                     VLVHCNTCANQSFPGNTLAALAVGTGASRATHVAYGIAGGAGAGLSLGALLGRYALYA
                     GNETRGGNPGTGAVLGGLLGAGVGALVGAALPPSLHWITLDLR"
BASE COUNT          431 a          728 c          773 g          445 t
ORIGIN      
        1 ggaccactgg atccacgcag cggcggcgcc ttgctgttgc gtgtgccgga tgattcggtg
       61 aatgaagcgc tggattcgat tcgcgacaac gatccttacg tgaagaaggg aatggcgcag
      121 tacgagctgc ttccgtgggc gccttccacc ggactggaga agctgaaccg gctataggat
      181 gcgacgatgc ctggcactcg atgggttttc agcatctgct gtctcattgt cccggcaacc
      241 gcgcagcccc aactgacgcg cggagactcg cttcgtatac tgagcgaagc gcattctgca
      301 cagagccgtt tcgagcgcgg acggcgcgaa tcccttcccc gtatcgacga gcccgaaaat
      361 catccatgcg agaccgtgat cggtcgcatg tgtcactggc gggatgacgg gtcgctgaag
      421 ccgcggcccg agccaggctc gattctgaga gcacgccagt cgctgatcgc gacgctcgcc
      481 catctcaatg caatctcacc cggcgacaac tggatcgccg gcgagcgcgt gcggtacatg
      541 atcgaagccg gcgaggattc ggccgccgtg tcggtcgcac gctcctgcgc gccgccccgc
      601 tggttctgca aggcgctgct gggctacgca cttcatgcgt cggagcgata tggcgacgcg
      661 gccgcggctt tcgacagcgc gctggcgcag atgccggcgg atgaacgctg cagatggaac
      721 gacatatcgg tgctgctcga cgacgacgag cgcgcacgtt acgacgcatt gccgtgcggc
      781 cagcgtgatt ccgtggagca acgcttctgg gatctggcgc agccttcgtt tgcggttcgc
      841 gggaacgacc ggcggacgga gcatttctcg cgcgtgctgg tcgccgatct gtccgaaacc
      901 gcggagaacg catacgggct tcaatggggt ccggacatgc gcgagatgct catcagatac
      961 ggcgagtcgc tctggtacag tgtctcgtgg cccggaccat acacgacatt ccagactccg
     1021 attggccacg accggcttcc gagtttccat ttcgccgcgg agatgaaggg tgatagcgca
     1081 cgctgggaca ccgacgcacc agtcgcgagg gagctctacg cgccgccgta catcgacacg
     1141 ctcgcgccgc tcgacgcaca attcgcgatg atgaaacgcg gcgattcagc gctcgtgctg
     1201 gcagtctatt ccgacacgac actgggcagc gcgatgctcg gcgtatcggg tacgtcgggc
     1261 gatacgatcg gagcgagcgc gcaccacggc cgtgtgcgtc gcgcacacag caggtggaag
     1321 ggcgaggtgg ttgcgatgga ggctttcgat cccgtgcggc tgcgcgatgc ccgagcgcgc
     1381 gagtggctgg cgcccccgca tcacggcatc ggtgcgccgg atctctcgac tctgctgctg
     1441 ttctcggctg ataccagcgc aactgtcgaa tcgctggacg atgcgctggc gcacgcgctc
     1501 acatccagtg atctgcgcgg cgcgcgacga ctgggattgt actgggaaga atatggcgtc
     1561 acccggccgg attcatcgag cgggcctcac gtgtcggcga ccgatgcgga ctcacagtct
     1621 gttggtgtac cggattcatc gtcggattcg tcgtcggtgc tcgtaacggt taatcgtatc
     1681 gatggaggag cgctgcgatg gcttggccag gctcttcaca tcacgcgccg cgattctccg
     1741 ctcgcggtca ggtggcacga tacgtacgcg agtactggca ttgcctcgca ttcagtggtg
     1801 ttggatctgg cgcagctgcc tgctggtacg tatcaggtat cggttgcggt cggcgccgat
     1861 gatgcgcacc ggactcagat atcgcgcgtg atcagattgc ggtaaaatct tgaaatacga
     1921 gtgtggcgca acgacggtca acgcaagtcg agcgtgatcc agtggagtga tggcggtagc
     1981 gctgctccga cgagcgcccc gacgcctgcg ccgagcaatc cgccaagcac cgcgccggtg
     2041 cccggattac cgccacgtgt ttcgttgccg gcgtacagtg cgtaacggcc caacaacgct
     2101 ccaagcgaaa gacccgcccc agcacctccc gcaataccat aggcgacatg tgtcgcgcgc
     2161 gatgctccag ttccgacggc cagcgccgca agagtgtttc cggggaagct ctgattcgcg
     2221 catgtattgc agtgaacgag cacgacggtg tcagtccgcg tgactgcgaa cgggcgtacc
     2281 agtgtgccta ttacccattc atgctcctga tcgacgcgca cgagagttcc cttacggaga
     2341 acggtcggtg gctgcacgcg atgcgacgaa tccgtct
//
LOCUS       DATIMD010000091         3946 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_35839, whole genome shotgun sequence.
ACCESSION   DATIMD010000091 DATIMD010000000
VERSION     DATIMD010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3946
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35839"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..835)
                     /locus_tag="VLI40_02075"
     CDS             complement(101..835)
                     /locus_tag="VLI40_02075"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HSU95981.1"
                     /translation="MKMEQSTVPAILLALGVAIGGLLVGNGFARGRAADRFVTVKGVA
                     ERDVQADLAIWPLRVVSADNDLTVAHAKLQTSVQKIMQFLAAQKIDTTQATLANFQVS
                     DAFTNQYGGSDRAPTRYVIHQTVVVRSSDPATVLAASQHVAELVNSGVVLSSGGEYGG
                     GGPTFVFTGLNKLKPAMIGEATARAREAAAQFATDSKSDLGGIRQASQGVFEILPRDQ
                     AQGITEESQVAKTVRVVSTVDYFLKN"
     gene            complement(903..2315)
                     /locus_tag="VLI40_02080"
     CDS             complement(903..2315)
                     /locus_tag="VLI40_02080"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSU95982.1"
                     /translation="MSFSSFKLDPNLLKGLKELGFVRPTPIQLDAIPPAMEGRDVLAC
                     AATGSGKTAAFLLPILHKLIARPRGTTRALIVTPTRELAAQIAEHLNEIAVHTPITSA
                     AIFGGVGMSPQEHAFRSGVDVLVATPGRLLDHLRHPYAKLDRLEFLVLDEADRMLDMG
                     FLPEIRKLLRLLPAKRQTLFFSATMPPPIAALTREMLVNPAMLRIERNAAPPTGITQA
                     VYPVSQELKAPLFLALLNRGEMKQALVFTRTKHRANRLADFLVRNGVKADRIHGNRSQ
                     TQRTAALAGFKNGTYKVLVATDIAARGIDVEELGHVVNFDVPLIAEDYIHRVGRTGRA
                     EATGEAFTFVAPDEEGDLRTIEKAVGKRLPRVTVPDFDYSARPTQKLEVPRGERIAAI
                     RAKKAEDRARAAAKAARRSSGGGQSGQSGQSGQSGQSGQGGGRSGQPARPARPAVPGT
                     NRPKSGSSPRRPGGNRGRAH"
     gene            2508..3476
                     /locus_tag="VLI40_02085"
     CDS             2508..3476
                     /locus_tag="VLI40_02085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP desaturase"
                     /protein_id="HSU95983.1"
                     /translation="MNMSEAETLAKVEVLADLEEEVRELMVAHESKRILWFQSELLSA
                     APDTDPDKHIRDLRRRAEGISTPARVALALNLLTEEGLPHFHRLLAAYLGGDTFWSKW
                     TNLWTAEEDRHGAVLHDYSRDSLVLNNPVLEKMQFEYLKSGFEPTWDKDPYRVFVYTT
                     LQERATQVSHANTGKLASEYEPMIGTVLANVAKEEARHYVFYRNVFQEVLARDPNRAL
                     ESAASIMPSIDMPGVNMPHFREMADVIRRAGIYGPRDYLKIVEEQIRYWAIDAIDGLN
                     EMGKKAQEKIMSIPARLERVADAMETRSRAKTFSFAVAFAREFEME"
     gene            complement(3508..>3946)
                     /locus_tag="VLI40_02090"
     CDS             complement(3508..>3946)
                     /locus_tag="VLI40_02090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95984.1"
                     /translation="DNTLFVADDDRHILAKNSTYHSARMLTTLWADSAGGAHSMLATA
                     VAALDGVTPPIESYAVQRPDGKIALLMVNRDPVNSWTVAVRGLDDNRATYDVWRLSAA
                     EYTWHPNGAHGFAKPNTGPRKTNVSADETLTLPPYSIVVMRQR"
BASE COUNT          731 a         1212 c         1233 g          770 t
ORIGIN      
        1 cgggcggcgg cgaatggtgc ggaaaagtcg tcatccctgt tatacggtcg tgtccggagc
       61 tgtcacgctg cgaccgtatg cggtggaaat gcccgacgcc ctagttcttc aggaagtaat
      121 ccaccgtcga aaccacgcgg acggtcttcg ctacctggct ttcctcggtg atgccctgag
      181 cctgatcccg cggaaggatc tcgaatacgc cctggctcgc ctggcggatt ccgcccaggt
      241 cgctttttga atcagtggcg aattgagcgg ccgcctcacg agcccgcgcc gtcgcctcgc
      301 cgatcatcgc aggcttgagc ttgttgagcc cggtgaagac gaaggtcgga ccgcctccgc
      361 catattcgcc gccagacgac agaaccactc ccgaattgac gagctctgcc acgtgctggc
      421 tggccgccag aacggtcgcg ggatcgctcg atcgcacgac cacggtctgg tgaatcacat
      481 agcgcgtcgg cgcccgatcg cttccaccat actggttggt gaatgcgtcc gatacctgaa
      541 aattcgcgag cgtggcctgc gtggtgtcga tcttctgcgc cgcgaggaac tgcatgatct
      601 tctgcacgct cgtctggagc ttggcgtgcg cgactgtcag gtcgttatcc gcagatacca
      661 cccgcaaggg ccagattgcc agatcggcct gcacatcacg ctcggcgacg cccttcactg
      721 tcacgaatcg gtcggcggca cggccacgcg cgaagccatt cccgaccagg agtccgccga
      781 tcgctacacc gagcgccagg aggatggcag gtaccgttga ctgctccatc ttcatcgcgt
      841 ttttctcctt ttcgtattct ggtaaaacga gggcctggcg gctcgccggc ccgactggtg
      901 ggctagtggg cccggcctct gttcccgccg ggccgccgcg gagagctgcc ggatttcggt
      961 cgattggtcc ctggaaccgc ggggcgcgcc ggcctggcgg gttggcctga tcgccctccg
     1021 ccctgaccgg actgaccgct ctggccggac tgaccggact gaccggactg accaccaccc
     1081 gacgatcggc gcgctgcctt tgcagctgcg cgcgcgcgat cctcggcttt cttggcacga
     1141 atcgccgcga tgcgctcgcc gcgcgggacc tcgagcttct gcgtcgggcg cgcgctgtaa
     1201 tcgaaatccg gtacggtcac gcgcggaagt cgcttgccaa ccgccttctc gatggtgcgg
     1261 agatcgcctt cctcgtccgg ggcaacgaag gtgaatgctt cacccgtcgc ctcggcgcgt
     1321 ccggtgcgac cgactctgtg gatgtaatct tccgcgatca acggtacgtc aaaattgacg
     1381 acgtggccca gttcttcgac gtcgattcca cgtgcggcaa tgtcggtcgc gacgagcacc
     1441 ttgtacgtgc cgttcttgaa tccggcgagc gcagcagtgc gctgagtctg cgatcggttg
     1501 ccgtgaatgc gatcggcctt gacgccgttc ctcacgagaa agtcggcgag acggttggcg
     1561 cgatgcttgg tgcgtgtgaa taccagcgcc tgcttcatct cgccgcgatt cagcagcgcg
     1621 agaaacagcg gagccttgag ctcctgcgaa accggataca ccgcctgcgt gatccccgtc
     1681 ggcggcgccg cattgcgctc tatgcgaagc attgccggat tgaccaacat ctcgcgcgtg
     1741 agtgccgcga tcggaggcgg catcgtcgcg ctgaagaaca acgtctgacg tttggctgga
     1801 agaagtcgga gaagcttccg gatctcggga aggaagccca tgtccagcat tcgatcggct
     1861 tcgtccagga ccagaaactc caacctgtcc agcttcgcgt aagggtgccg taaatgatcc
     1921 agcagccgtc ctggcgtcgc gacgagcacg tccactccgc tccggaacgc atgctcctgc
     1981 ggcgacatgc cgacgccgcc aaatatcgcg gcactggtta tcggtgtgtg tacggcgatc
     2041 tcgttgagat gctcggcaat ctgcgccgca agctcgcgcg tgggcgtgac gatgagcgcg
     2101 cgagtggttc cacgcggccg cgcgatcagc ttgtgaagta ttggaagcag gaacgccgcc
     2161 gtcttgccgc tgccagtagc ggcgcatgcg agcacgtcgc gcccttccat ggcaggcggt
     2221 atggcgtcca gctgaattgg cgtgggacga acgaagccca gttccttcag gcctttgaga
     2281 agattggggt cgagcttgaa actgctgaat gacacgcgga gtccggtttt agggcaatcc
     2341 tgaaagttag cggaatggcg ctggatcgca cgaaacgtgt gattgcgggc ttgccgagcg
     2401 cctgcaatcg acgcgacggc cgcgctttgc ccctactata cgtaattctg ccgaattggc
     2461 atcaaggctg ctttctggta acttgcaatc atgaccacca ctccagcatg aacatgtcag
     2521 aagccgagac gctggccaaa gtagaggttc tggcggatct cgaggaagag gtgcgcgagc
     2581 tcatggtggc tcatgagtcc aagcggatac tctggttcca gagcgagctg ctctctgccg
     2641 cgcctgatac ggatccggac aagcacatcc gcgatctacg acgtcgagcg gagggaatca
     2701 gcacacccgc gagagtcgcg cttgctctca atcttctgac cgaggagggc ctgccgcact
     2761 ttcaccgcct gctggccgca tacctgggcg gcgacacatt ctggtccaag tggaccaatc
     2821 tatggaccgc cgaagaagat cggcacggtg ccgtgcttca cgattattca cgagacagcc
     2881 tcgtgctgaa caatcccgtg ctggaaaaga tgcagttcga atatctcaag tccggcttcg
     2941 agccgacgtg ggacaaggac ccgtatcgcg tgttcgtgta caccacgctc caggagcgcg
     3001 cgactcaggt gagtcacgcc aacaccggga agctggcgag cgagtacgag ccgatgatcg
     3061 gtacggtact ggcgaacgtg gcgaaggaag aagcgcgtca ctacgtgttc taccggaacg
     3121 tctttcagga agtgctcgct cgtgatccca atcgcgctct cgagtcggcg gcgtcgatca
     3181 tgccgtccat cgacatgccg ggcgtgaaca tgccgcactt ccgcgagatg gccgacgtga
     3241 tccggcgcgc cggaatctac gggccgcgcg actatctgaa gatcgtggaa gagcagattc
     3301 gctactgggc gatcgacgcg atcgacggat tgaacgagat gggcaagaag gcgcaggaaa
     3361 agatcatgtc gattcccgcc cgtctcgaac gtgtcgccga cgcgatggaa acccgcagcc
     3421 gcgccaagac gttctccttc gcggtcgcct tcgcacgcga attcgagatg gagtagcgca
     3481 ggagtagcgc aggagtagcg cgtcggctta tcgctggcgc atcactacaa ttgaatatgg
     3541 tggcaacgtc agcgtctcat cggcgctgac gttcgttttt cgcggtccgg tgttcggttt
     3601 ggcgaatccg tgcgcaccat tcggatgcca tgtgtactcc gcggcggaca atcgccacac
     3661 gtcgtacgtc gcgcgattgt cgtcaagccc gcgtacggcg acggtccacg agtttacggg
     3721 atcacgattc accatcaaca gcgcgatctt tccatcggga cgctgcaccg cgtatgattc
     3781 gatcggagga gtgacgccgt ccagcgcagc caccgctgtc gcgagcatgc tgtgtgcgcc
     3841 accagccgag tcagcccaga gcgtcgtgag catgcgcgcg gaatggtacg tcgagttctt
     3901 cgcgagtatg tgacgatcgt cgtccgcgac gaatagcgtg ttgtcg
//
LOCUS       DATIMD010000092         6699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_614557, whole genome shotgun sequence.
ACCESSION   DATIMD010000092 DATIMD010000000
VERSION     DATIMD010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6699
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_614557"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            136..627
                     /locus_tag="VLI40_02095"
     CDS             136..627
                     /locus_tag="VLI40_02095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95985.1"
                     /translation="MASTVISMRLAPTQVQSLRRVARRWGKTASETSARLVEEALRME
                     EFAHIEFRDTASGRQAFIKGTRLSVWMLIAIANQYGADVAKSADHLRWAPERVQAGLN
                     YYAAFRDEIDPVLQENEGYTFEQVGRRLPGVEEFSAGLHPISATKAVAEPAVARRSHP
                     RRK"
     gene            633..1004
                     /locus_tag="VLI40_02100"
     CDS             633..1004
                     /locus_tag="VLI40_02100"
                     /inference="COORDINATES: protein motif:HMM:NF037832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5615 family PIN-like protein"
                     /protein_id="HSU95986.1"
                     /translation="MLRLLLDEHITPDVAIAMRRMEPQVHVESLAEWQDGRYVGLPDD
                     VIIAAAHRDGRTLVTYDQVTIVPLIAALAERGDHHGGVVFVSHWAIRQNDVGTLARTL
                     VALWRAEHRRKWSNRCVYAHP"
     gene            complement(1084..3396)
                     /locus_tag="VLI40_02105"
     CDS             complement(1084..3396)
                     /locus_tag="VLI40_02105"
                     /inference="COORDINATES: protein motif:HMM:NF012632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HSU95987.1"
                     /translation="MRRSVVSFRILVSCSAVLLFACSSDTVTDPNTPIGLQLSLSPAT
                     DTIFITDTLTGAETVQLSVAAVSQSRSIAVPTGRVFESQSPAIAAVDSVSGLVHALSV
                     GTADVVVRVNGVRAHSTIVVEHPTSRIIVTPGIADILEDNTFGTADTTRVHAQAYGAD
                     GKALVGVRYSFSSSDTTVVVVDPSGKVRALKIGTATITSTANNLTGTATVHAARATRT
                     LAVNAVADSIFVDKPIATTDTTLLQPIAKDSLGGVRTGLSYTFVTSDPSVATVSASGV
                     VTAKGLGTATVTATGADLNVSKTVSVLSLAKTVTLTATASGWLVGDTIPLSASALGWR
                     GTTLSGRTFSYATPAGNASVAPTGHAVFGTAGTATFTATTAFTTSNGLILTAFPREFI
                     ASTVGTLSTGGDATCGLLPLNRAYCFGTGTLLGVTKDTSCFDDLGGSPRPCSLVPLRV
                     GGNLQFTAVSVGDSVACGIILTSHVYCWGDQTYGELGNGISQAGPPALPALVITTQGT
                     AVTLVQISAGHAHACGVDPSGAAYCWGKDATFQLGGGGGKHAVNSSTPIPVWLGSTVH
                     FTSISAGGNHTCALSDAGTAYCWGLNTDGQLGRGTVGDSSDVPAPVSGSQTFIQVSAG
                     FRHTCGLTQSQQIYCWGANDSLQAGQSAGQRILTPTLVAGSGYSALAVGAAHNCALIS
                     GTAYCWGKNDYGQLGRGFGTTNSPSASAVPTAVAQGSLVFSNISAGRRTSCAIAADGL
                     YCWGSAVMGALGDNLQALSVPFPRKTAVPQ"
     gene            complement(3847..4494)
                     /locus_tag="VLI40_02110"
     CDS             complement(3847..4494)
                     /locus_tag="VLI40_02110"
                     /inference="COORDINATES: protein motif:HMM:NF016207.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding negative transcriptional regulator"
                     /protein_id="HSU95988.1"
                     /translation="MYQPPNFREDQLDVQHGLIRAHPLGLIITAGTGGLMANSIPCLV
                     DSDGTGFGTIRCHLARANSQWRELAAVDECMVVFQGPQDYVTPSWYATKRETGKVVPT
                     WNYATVHVWGRPRVVEDDVWLRRQLDDLTRLCEGGRPTPWSVDDAPADFIVAQMKGIV
                     GIEIPISRIEGKWKMSQNRPEADRIGVVEGYREKGPAAGAMAELVAKCGGLPISE"
     gene            4802..5065
                     /locus_tag="VLI40_02115"
     CDS             4802..5065
                     /locus_tag="VLI40_02115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95989.1"
                     /translation="MRKNSNTLRAIALGLSVATAGTAVALYATPVIAQPAQIAATVAD
                     TIPTKPDTARPKPDTTMPPMPTKPDTTKPKPDTTKPAPAVKPL"
     gene            complement(5188..5829)
                     /locus_tag="VLI40_02120"
     CDS             complement(5188..5829)
                     /locus_tag="VLI40_02120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95990.1"
                     /translation="MTSRRAARAIVIASTIVATIVVGACATAHTSQFASAMSAHNWTD
                     AATALAADTTLLHNESTLFDAAMLYSFPNRPTYNPARARELFERLLRDYPNTSRRQQA
                     IDQLSLLYELQKTSNAAVAKQEGLRAQIAQLASDTLKLRRSIDSIAVRLQAEQDQSAL
                     LRKVATRLESDLQDRENQLNVLHDELNHLKAIDLRSTIRTPSGDTALKKPRKP"
     gene            complement(5826..>6699)
                     /locus_tag="VLI40_02125"
     CDS             complement(5826..>6699)
                     /locus_tag="VLI40_02125"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSU95991.1"
                     /translation="EFAEVARAFNSMTERLAALDRMKRDFVTGVSHDLKTPLTSMQET
                     ISILLDEVPGPLTEKQRTLLVLNQQSGERLSAMLAKLLNLSRLEGGLEPEMQVTDGAQ
                     LLRRAVAQAASAAEEHALHVDVIEPDHKVLVECDQDRILQVLDNLLENAIKFSPVGGS
                     VRVEMQVLTERPDEIPRGRWSAARSQRPDSSLMWITVTDTGPGVPDSEKERIFERFYQ
                     TPSGRAVRHRGVGLGLTICREIVGAHAGVMWVADNPAGSGTVFNVLLPGAFRASPEAT
                     MPASSSSSSPSVVS"
BASE COUNT         1274 a         2114 c         2020 g         1291 t
ORIGIN      
        1 aatcgatgca cggatcacga cgggacgcct caagcgtccc gttttgcgtt gagcccccga
       61 cggtcaactc cgggtttcgc ccatgattgg cggtcggagt tacattgtat tcaatgtaac
      121 tccatggaga tttctatggc cagcacggtg atcagcatgc ggctcgcacc aacgcaggtc
      181 caatcgctcc ggcgtgtggc tcggcgctgg ggaaagacag cgagtgagac aagtgcccgg
      241 ctcgtcgaag aggcactgcg tatggaggag tttgctcata tcgaatttcg agacaccgct
      301 tccggccggc aggcgttcat caagggaacc cggctctcgg tctggatgtt gatcgcgatt
      361 gcgaatcagt atggggcgga tgtcgccaaa agcgctgacc atctacgctg ggctccggaa
      421 cgggtccagg ccggcctcaa ctattatgca gcgtttcgag atgagatcga tcctgtcctg
      481 caggaaaacg aggggtacac attcgagcaa gttgggcgcc gcctccccgg agttgaagag
      541 ttcagtgcag ggctccatcc gatcagtgcg acgaaggctg ttgccgaacc ggccgttgcg
      601 cggcgcagtc atccgcgcag aaagtaattc gcgtgcttcg cttattgctc gacgagcaca
      661 tcacaccgga tgtcgctatt gcgatgcgac gcatggagcc acaggttcat gtcgaatcgc
      721 ttgccgaatg gcaggatgga cgctacgtcg ggctgcctga tgacgttatc atcgcagcag
      781 ctcaccgcga tgggcgcaca ctcgtcactt acgatcaggt gacgatcgtc ccactgatcg
      841 cagcactcgc cgagcgcggc gaccatcacg gcggcgtcgt gttcgtgagc cattgggcga
      901 tacgacagaa cgacgtcgga acgctcgcgc gtacgctggt ggcgttgtgg cgcgcggagc
      961 accgccgcaa gtggagcaat cggtgcgtgt atgcgcatcc atagtttgta actcgagcgt
     1021 tccggctacg gaagaccgcc gtgctccgct gtcagatttg caattccgtc cgcagcaggc
     1081 cctttactgc ggaacagcgg tttttcgcgg gaacggtact gagagcgctt gcagattgtc
     1141 ccccaaggcg cccattaccg cggagcccca gcagtacagt ccgtcagcgg cgattgcgca
     1201 cgatgttcga cgtcccgcgc tgatgttgct gaacaccagt gagccctgcg ccacagcggt
     1261 cgggaccgcc gatgcggacg ggctgtttgt agtgccaaag ccgcggccca gctgcccgta
     1321 atcattcttg ccccagcagt aggcggttcc gctgataagc gcgcagttgt gtgctgcgcc
     1381 gaccgccaag gcggaatagc cgctgccggc gacgagcgtg ggtgtgagga tacgctgccc
     1441 tgcagattgg cccgcttgca acgaatcgtt cgcgccccag cagtagatct gctggctctg
     1501 tgtcagcccg cacgtgtgcc ggaaaccggc gctgacctgg atgaatgttt gcgatccaga
     1561 cacaggagca ggtacatcgc tcgagtcgcc gacggttcca cgcccaagct ggccgtccgt
     1621 gttgagaccc cagcagtatg cggtgcccgc atcacttagc gcgcaagtgt gatttccgcc
     1681 tgcgctgatc gaggtgaagt gaaccgtact tcccaaccac acgggaatgg gtgtagatga
     1741 gttgacggcg tgtttcccgc cgccgccgcc gagctggaat gtcgcgtcct tgccccaaca
     1801 atacgccgca ccactcggat cgactccgca cgcatgcgca tgtccggcag aaatctgcac
     1861 gagagtaacg gctgtgccct gtgtcgtaat tacaagcgct ggcagtgcag gcgggcctgc
     1921 ttgcgatatg ccgttcccga gttctccata cgtctggtcg ccccagcagt aaacgtggct
     1981 ggtaaggata atcccacatg cgacagagtc tccgacgctc accgctgtga attggagatt
     2041 tccaccgacg cgcagcggaa cgagcgagca cggacgcggg ctccctccca aatcgtcaaa
     2101 gcaactcgtg tctttcgtta cacccagcaa tgttcccgtc ccgaaacagt aggcacgatt
     2161 gagcggtaac agtccgcacg ttgcatctcc gcccgtcgac agcgtgccca ccgtactagc
     2221 aatgaactcg cgcggaaatg cagtcaggat gagaccgttg ctcgtcgtga acgcggtcgt
     2281 agcggtaaac gtcgccgtgc ctgcagtacc gaacacagcg tggccagtcg gagcaacgct
     2341 ggcgttccct gctggcgttg cgtagctgaa cgtgcggccg ctgagagtcg tgccgcgcca
     2401 tccgagcgcg ctcgcgctca gcgggatcgt atctcccacg agccatcccg acgccgtcgc
     2461 ggtcagtgtt acggtcttcg ccagcgagag cacgctaacc gttttcgata cgttgagatc
     2521 cgcgcccgtt gctgtaacgg ttgccgtgcc gagacctttc gccgtgacga caccggaagc
     2581 actcacggtc gcaacggacg gatcgctggt aacgaaggtg tacgaaaggc cggttcgtac
     2641 tccgccgagc gagtccttgg cgattggctg cagtagcgtg gtatccgttg tcgcgatggg
     2701 cttgtcgacg aagatcgaat cggcgaccgc gttcaccgct agtgttcggg tcgcgcgcgc
     2761 tgcgtgcaca gttgcggttc cggtcagatt gttcgcggtc gaagtgatcg tcgctgtccc
     2821 gatcttgagt gcgcgcacct ttccgctcgg atcgaccacc acgacagtcg tatcgctcga
     2881 actgaaactg tatcgcacgc cgacgagagc cttcccgtcc gcgccgtacg cctgcgcgtg
     2941 aacacgggtg gtgtcagcgg ttccaaacgt gttgtcttcg agaatgtctg cgatccccgg
     3001 cgtgacgatt atgcgactcg tcggatgctc cacgacaata gtcgagtgcg ctctcacacc
     3061 gttcacgcgc accacgacat ccgcggtgcc aaccgaaagc gcatgaacga gaccggacac
     3121 tgaatcaaca gccgcgatag ccgggctttg cgactcgaat acgcggccgg tcggaacggc
     3181 gatggaacga ctctgcgaca ctgcagcgac cgatagctga actgtctcgg cgccggtgag
     3241 cgtgtcagtg atgaagatcg tatctgtcgc aggcgacagc gacagctgca atccaattgg
     3301 tgtattcggg tctgtgacag tgtcggagct gcatgcgaat agaagcacgg cgctgcacga
     3361 cacaaggatc cggaacgata cgactgaacg gcgcatcttt gctcacagaa gggaggagtc
     3421 cgaccgcccg cagaggcggg tagtgcatca ctggtcgcat gcaacacgca gcttccacca
     3481 tccgacgcat atggatcgcg cggacgatgg tgcgtggcgg ccgagccagg acgcgagcgt
     3541 gccgccgcgt actccgccga agcccgacta gaggaagaga cgtgccgtat ccccgccgcc
     3601 ggttgcggga tgacacgcag gcgcaccgct cgcgtcgctt ggcatcgagt gtgagataca
     3661 actcgttgct ggaacagcgc ttatacgctt tcgcgatccg tcggtgaccc atcttcgctc
     3721 cagaatcctg aagcgtcgtg ctcggcgtct cggttcatgt gtcgagttgt caccacacat
     3781 atgtggcaac aacgcaagcc ttcctgccca agctttcctg cccaccgaaa agcgtcgcgc
     3841 gtgtcttcat tcagatattg gcaaccctcc acacttcgcg acgagctcgg ccatcgcacc
     3901 cgccgcaggc cccttctccc tatatccctc gacgacacca atccgatccg cctccggccg
     3961 gttctggctc atcttccact tgccctcgat cctgctgatg ggaatctcga tcccgacgat
     4021 ccccttcatc tgtgcgacga tgaagtcagc gggcgcgtca tccacgctcc acggcgtggg
     4081 acggccgccc tcacacagcc gtgtaagatc gtccagttgc cgccgcagcc agacgtcgtc
     4141 ctcgaccact cgcggccggc cccagacgtg gaccgtcgcg tagttccacg taggaaccac
     4201 ctttccggtt tcacgcttgg tcgcgtacca ggacggcgtc acgtagtcct gcggcccctg
     4261 gaatacgacc atgcattcgt cgacggccgc cagctcgcgc cactggctgt tagctcgcgc
     4321 gaggtggcat cggatggtgc cgaagccagt gccgtcggag tcgacaaggc aggggataga
     4381 attggccatc aggccgccgg tgccagctgt gatgatcaat ccgagcggat gtgcacgtat
     4441 cagcccgtgc tgaacgtcga gctgatcttc gcggaaattc ggcggctgat acatgaggct
     4501 ccttggagat gactgatcac gaatatacgg aatttccgga tttagcctcg atttcaggtc
     4561 atgtagcccg aattcgaggc gcaaaatacc cggggaaatt ttccctgatc ccggattcca
     4621 gccagattgt cgccatccgt ggagacgtgt aaatcattgt gctgcaacgg tttacatcga
     4681 ccgggaaccg cggcatatcc attgccttta ctaatgtctg aagccggccg ccttatgcgg
     4741 tccagatcag gcaagcacca ctgatggtgg ttgtcgggaa ctcaccaaca ggagtctcta
     4801 gatgcgtaag aattccaaca ccctgcgtgc gatcgcactc ggcctcagcg ttgccacggc
     4861 aggaaccgcc gtcgcgctgt acgccactcc agtgatcgca cagccagccc agatcgccgc
     4921 gaccgtggct gacacgatcc cgaccaagcc ggatacggcc cgtccgaagc ccgacacgac
     4981 gatgccgcca atgccgacca agccggatac gacgaagcca aagccggaca cgaccaagcc
     5041 ggctccggcg gtcaagccgc tctagttttc cagcagttta gagcggtgag tgcgggcgcg
     5101 gtgtcacgac ggtgatatcg cgcccgcagt acgtccgtcc cgaacgccga caatctcggc
     5161 cgacgacaat ctcagccgcc cacgccccta aggcttgcgc ggctttttca gcgccgtgtc
     5221 gccgctcggc gtcctgatgg tcgaccgcag atcgatcgcc ttgagatggt tcagctcgtc
     5281 gtgcagcacg ttgagctgat tttcccggtc ctgcaggtca ctctccaaac gcgtcgcgac
     5341 ctttctgagc agcgcactct ggtcctgttc ggcctgcaac cggacggcga tcgaatcgat
     5401 gcttcggcgc aacttcagcg tgtcagaggc cagctgcgcg atctgcgcac gcagcccctc
     5461 ctgcttcgca acagcggcgt tgctggtctt ctgcagctcg tacagcagcg acagctggtc
     5521 tatcgcctgc tgcctccggg acgtgttcgg atagtcccgg agcagtcgct cgaacagctc
     5581 gcgcgcacga gcggggttgt acgtcggcct gttcggaaag ctgtacagca tcgctgcgtc
     5641 gaacagcgtc gattcattgt ggaggagcgt cgtatcggcg gctagcgctg tcgcggcgtc
     5701 cgtccagtta tgggcgctca tcgcgctggc aaactgcgac gtgtgcgccg ttgcgcatgc
     5761 gccgaccacg atcgtcgcga caatggtaga agcgatgact atagcacgcg cggcccggcg
     5821 gctcgtcatg agactacgga tggactgctg gaagacgagg aggctggcat cgttgcctcg
     5881 ggcgacgcac gaaatgcgcc cggaagcagg acgttgaaca ccgtgccact gcctgccggg
     5941 ttgtctgcga cccacatgac accggcatgc gccccgacaa tctcccggca gatggtgagg
     6001 ccaaggccca ctccccggtg acggacagca cgcccggacg gcgtctggta gaaccgctcg
     6061 aagatccgtt ccttttccga atcaggcact ccggggccgg tgtccgtcac cgtgatccac
     6121 atgaggctcg agtccggtcg ctgggaccgc gctgcggacc accgcccacg agggatctca
     6181 tcgggccgct ccgtcagcac ctgcatctcg acgcgcacgg atccgccaac tggtgaaaat
     6241 ttgatcgcgt tctcgagcag attgtcgagc acctgaagaa tccggtcctg atcgcactcc
     6301 acgagcacct tgtgatccgg ctcgatcaca tccacgtgca gcgcatgctc ttccgcggcg
     6361 ctggcggcct gcgcgaccgc acggcgcagc agctgcgctc cgtccgtcac ctgcatctcg
     6421 ggctccaggc cgccttccag ccgcgacaga ttcaacagct tggcaagcat cgcagaaagg
     6481 cgctcgccac tctgttgatt gagcacgagc agtgtgcgct gcttttcggt cagcggtccg
     6541 ggcacttcgt ccaggagtat gctgatcgtt tcctgcatcg acgtcagcgg cgtcttgaga
     6601 tcgtgagaca caccggtgac gaagtcgcgc ttcatgcggt cgagcgcggc gagtcgttcg
     6661 gtcatcgaat tgaacgcgcg cgcgacctcc gcgaactcg
//
LOCUS       DATIMD010000093         4080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_325863, whole genome shotgun sequence.
ACCESSION   DATIMD010000093 DATIMD010000000
VERSION     DATIMD010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325863"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1237
                     /locus_tag="VLI40_02130"
     CDS             <1..1237
                     /locus_tag="VLI40_02130"
                     /inference="COORDINATES: protein motif:HMM:NF024755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HSU95992.1"
                     /translation="LGDAEPKYLNSPENPVFSKSKTLYALGWCKNAIRKADRVFVVEG
                     YMDAIRLMMAGIDTVVAPLGTALTEAQGAMVAKYTRNVYLLYDSDQAGLKATFRSGDE
                     LLRHGCSVRVITLPNGEDPDTFVRANGAAALEQQVSQSVDVFERKIQLLERGGWFAEL
                     QKKRRALDRLLPTIRATLDPLLRELYIGRAAEKTGIAKEALVREANTVPRGEPRPVVA
                     DERVTGDDGEPADPYGESGPPHPAAPTARHRERRRIHDGGVAGAERQLIHAMLDDPSR
                     TVPIAEKIDPADFIDERYRAIFYAMLDLGDNYTVERLEDRLEPSDIVALNEILEEKGA
                     LLYPNETVAASIAIIEMRKIEASQAEIDRTMSVGTVQEQTDMLMQKVKLQQERRSLGQ
                     PAAKSYGKVLNPPKRAPSE"
     gene            1234..2943
                     /gene="recJ"
                     /locus_tag="VLI40_02135"
     CDS             1234..2943
                     /gene="recJ"
                     /locus_tag="VLI40_02135"
                     /inference="COORDINATES: protein motif:HMM:TIGR00644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008297 - single-stranded DNA
                     exodeoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HSU95993.1"
                     /translation="MTRAKTRWTEAPVIDVASVTTLAASLGVSPPIARLLVHRGYGDT
                     EAAKRFLRPRLDQLHDGTAMMSLEVAVDRLVRAIHGGELIMIHGDYDVDGICSTTLLV
                     RAIRGFGGNVVPFIPNRMTDGYDLGAAGVKHAIEIGAKVVVTCDCGTTALEPVSALNA
                     AGIDVVISDHHLPRETFPDSLALLNPRRPDCDYPDKDLAAVGVAFKLALALASALKVS
                     DAFIWKMLDLVALATVADVASLRGENRIFVRYGIRMISETENVGLRALLRASGMDGKP
                     LTAGRIGFTLAPRLNAAGRLGHALRGVELLLTESEHEANVIARELEELNQRRQALDRA
                     TLDEARVMAERQVNDGAIGLVLAREGWHPGVIGIVASRIVEEFSRPVIMIALEGGVGK
                     GSGRSISGFDLHSALVQCADLLLRFGGHRAAAGITIAADQVDAFTRRFDEVVSARLTL
                     DELVPELRVDAEIELDQNTLDLETTLRHFEPFGVGNPAPVFAARNVTVFGSPRVVGRD
                     GLKLTLVGPNGTQLEAIGWGMADLAPAIRAGKALDVAFRLERDEYRGESRLQARLADI
                     IVR"
     gene            2940..3452
                     /gene="rsmD"
                     /locus_tag="VLI40_02140"
     CDS             2940..3452
                     /gene="rsmD"
                     /locus_tag="VLI40_02140"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: protein motif:HMM:TIGR00095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HSU95994.1"
                     /translation="MRIVGGEWRGRIIKAPRGNAVRPTLDRVREAWMSIVQLSLPGAR
                     VLDLFAGSGALGIEALSRGAASAEFVDADPRSLRVVRDNLDTLGAADRATVTRSDAIE
                     FANSLAADSYDVVFADPPYATDAAVQLAERWLRAPFSTVIGIEHARSVAMPAGGETRR
                     YGDSGVTFYR"
     gene            3452..3937
                     /gene="coaD"
                     /locus_tag="VLI40_02145"
     CDS             3452..3937
                     /gene="coaD"
                     /locus_tag="VLI40_02145"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HSU95995.1"
                     /translation="MPTIAVYAGSFDPMTRGHEELARRSRTFVDELVIAVTTNSSKHP
                     LFSIEERTELIRTTIGNAPGITVRPFSGLLADFARSIDASLIIRGLRAAGDFEYEFQM
                     ALMNRHLGPGIETVFMVPSVETTYISSSIVREVARYGGDLTGLVHPKVAEALRAKFDH
                     Q"
BASE COUNT          751 a         1243 c         1317 g          769 t
ORIGIN      
        1 gctcggcgac gctgagccca agtatctcaa ctcgcccgag aatccggtgt tcagcaaatc
       61 gaagacgctg tatgctctgg gctggtgcaa gaacgcgatt cgcaaggccg atcgcgtttt
      121 tgtggtggag ggctacatgg acgcgatacg tctcatgatg gccggcatcg ataccgtcgt
      181 ggcaccactc ggcaccgcgc tcaccgaagc gcagggtgcg atggtcgcga agtatacgcg
      241 caacgtctac ctgctgtatg acagcgatca ggccggcctc aaggccacgt ttcgctcggg
      301 cgatgaattg ctgcggcatg gttgctcagt acgcgtgatc acgctgccca acggggaaga
      361 tccggacacc ttcgttcgcg cgaatggcgc cgccgcgctg gagcaacagg tgtcgcaatc
      421 ggtagatgta ttcgagcgga agattcaact gctcgagcgc ggcggatggt tcgccgagtt
      481 gcagaagaaa cgtcgcgcgc tcgaccggct gcttcccacg attcgcgcca cgctggatcc
      541 gttgttgcgc gagctgtaca tcggccgtgc agcggagaag acgggtatcg cgaaggaggc
      601 gctggttcgc gaagcgaaca ccgttccgcg cggggagcct cggcctgtcg ttgctgacga
      661 acgcgttacc ggagacgatg gcgaacccgc cgacccgtac ggcgaatcag gaccgccgca
      721 tccggccgcg ccgacagcgc gacaccggga gcggcgacgg attcatgatg gcggcgtcgc
      781 gggggcggag cgacagctga tccacgctat gctcgatgac ccaagtcgaa ctgtcccgat
      841 agcggagaag atagatcctg cagactttat cgacgagcgt taccgggcca ttttctatgc
      901 gatgctcgac ctcggtgaca actacacggt agagcgcctg gaggaccggc tcgaaccgag
      961 cgatattgtc gcgctcaacg agatcctgga ggagaaaggt gcgctacttt atcccaacga
     1021 gacggttgcg gcttcgattg caataatcga gatgcgcaag attgaagcga gtcaggccga
     1081 gatcgaccgc acgatgagcg ttggcaccgt ccaggaacag accgatatgt tgatgcagaa
     1141 ggtgaagctg cagcaggagc gcagatctct cggccagcca gctgcgaagt cgtacggcaa
     1201 ggtgctgaac ccaccgaagc gagcgcccag cgaatgacgc gcgccaagac ccgctggact
     1261 gaagcgccgg tgatcgacgt tgcgtcggtc accacactcg ccgcgtcact cggcgtgtct
     1321 ccaccgatcg cgcgactgct cgttcatcgc ggttatggcg acacggaagc tgcgaaacgc
     1381 tttctccggc cgcgactgga tcagttgcac gacggcaccg cgatgatgag cctcgaagtg
     1441 gcagtggacc gccttgttcg cgccattcac ggcggcgagc tcatcatgat tcatggagac
     1501 tacgacgtcg atggaatctg ctccacgacg cttctcgtgc gtgcgattcg cggattcggc
     1561 ggcaacgtgg tgccgttcat cccgaatcgc atgaccgatg gctacgacct gggcgcggct
     1621 ggggtgaagc atgcgatcga gatcggcgcg aaagtcgtgg ttacgtgcga ttgcggcacc
     1681 actgcgctgg agccggtttc tgctctcaac gcggccggta tcgacgttgt gatcagcgac
     1741 catcacctgc cgcgcgaaac gtttcccgat tcgctggcgc tgcttaaccc gcggcggccc
     1801 gattgcgatt acccggacaa ggatctcgca gctgtaggcg ttgcgttcaa gctcgcgctg
     1861 gcgctcgcta gtgcgttgaa ggtcagcgat gcgttcatct ggaagatgct ggacctcgtt
     1921 gcgcttgcga ccgttgcaga cgttgcatcg ctgcggggcg agaaccggat cttcgttcgg
     1981 tacggcatcc gaatgatttc cgagacggag aacgttggcc tgcgcgccct gctcagggcc
     2041 tcgggaatgg acggcaagcc gctcaccgcc ggcaggattg gcttcacact cgcgccgcgg
     2101 ttgaacgccg cgggccggct cggccatgcg ttgcgcggcg tggagctgct tctcaccgag
     2161 tcggagcacg aggcgaatgt catcgcgcgc gagctcgaag agttgaatca gcgtcgtcag
     2221 gcgctcgatc gcgcaacgct cgatgaggcg cgcgtgatgg cggagcgtca ggtgaacgac
     2281 ggcgcgatcg gactcgtgct tgcgagagaa ggctggcatc ccggcgtgat tggcatcgtt
     2341 gcatcccgca tcgtcgagga attttcgcgg ccggtgatca tgatcgccct ggaaggcggg
     2401 gtgggcaagg gaagcggtcg ctcgatttcc ggcttcgatc ttcactccgc gctggtgcag
     2461 tgcgccgatc tgttgctcag gttcggcggt catcgcgctg ccgccggtat cacgattgcc
     2521 gcagatcagg tcgatgcgtt cacgcgtcgt ttcgacgaag tagtaagtgc gcgccttacc
     2581 ctcgatgagc tcgtaccgga gctgcgagtc gacgccgaga tcgagctgga tcagaatacc
     2641 ctcgatctcg aaacgacact ccgacacttc gaaccgttcg gcgtcggtaa tccagcgcca
     2701 gtgttcgcag cacggaatgt cacggtattc ggaagtccgc gagttgttgg gcgcgacgga
     2761 ctcaagctca ctctcgttgg tcccaatggt acgcagctcg aagcgatcgg ctggggaatg
     2821 gccgaccttg caccggcgat tcgcgccgga aaggcgctcg atgtcgcatt tcgcctggag
     2881 cgggacgagt acaggggcga gagccggctg caggcgcgcc ttgccgacat catcgtgcga
     2941 tgaggatcgt aggcggcgag tggcgcgggc gaatcatcaa ggctccccgc ggcaacgctg
     3001 tacgtccaac gctcgaccgc gttcgcgagg catggatgag catcgttcag ctgtcgctgc
     3061 cgggcgcgcg cgtactcgat ctcttcgcgg ggtccggtgc gctcggtatc gaagcattat
     3121 cgcgtggcgc tgcaagcgcc gagttcgtcg atgcagatcc tcgatcgctc cgcgtcgttc
     3181 gcgacaacct cgatacgctc ggcgctgcgg atcgggcaac ggtgacacgt tcggatgcca
     3241 ttgaattcgc caattcactt gccgccgact cgtacgatgt ggttttcgcc gatcctccgt
     3301 acgcgaccga cgccgccgtg cagcttgcgg agcgctggtt gcgcgcgccg ttctccaccg
     3361 tgatcggcat cgagcatgcg cgctcggttg ccatgcccgc tggcggcgag acgcggcgct
     3421 atggcgactc tggcgttacc ttctatcgct gatgccgaca atagccgttt acgctggcag
     3481 tttcgacccg atgacccgcg gccacgagga gctcgcccgc cgcagccgga cattcgtgga
     3541 cgagcttgtc atcgccgtca cgacgaattc gagtaaacac ccgctcttct cgatcgagga
     3601 gcgaaccgag ctcatcagga ccaccatagg caacgcgccg ggaataaccg tgcgcccatt
     3661 ttccgggctg ctcgccgatt ttgcacgatc gatcgacgcg tcgctcatca tccgcgggtt
     3721 gcgcgccgcc ggcgacttcg agtatgaatt ccagatggca ctcatgaatc gccatcttgg
     3781 cccaggcatc gaaaccgtgt tcatggttcc ctcagtggaa accacgtata tcagctccag
     3841 catcgtgcgt gaggtcgcgc gctatggcgg cgacctcacc ggtctcgtgc atcccaaggt
     3901 cgccgaagca ctccgcgcca agttcgatca tcagtgacag gcggtgaacg gtcagtgaca
     3961 gacgggcggc ttcacagctt catcgaggga attcgaacgc gcgccgcgct ctccaagcgc
     4021 cgcatcgcct ttcccgagag cggcgatcca cgcgtgcttg ccgcgacgga gcgcctcgac
//
LOCUS       DATIMD010000094         4212 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2346421, whole genome shotgun sequence.
ACCESSION   DATIMD010000094 DATIMD010000000
VERSION     DATIMD010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4212
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2346421"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..909
                     /locus_tag="VLI40_02150"
     CDS             <1..909
                     /locus_tag="VLI40_02150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95996.1"
                     /translation="GWSDTIVQARDTLAEWLAPLLSDGTLQRAIALVLTVALAAFVIM
                     AASDTSGNRLKRLRVGGLSVLLGATSLLGACYVVVIVASRAFVGGTIPFDWRILAPLI
                     VLIEIEAVAAIAYWWRAYHFPARVAIAIVALVWLGATTTATVNDAVYATTEGSDFANT
                     SWRDSPLTAWVRANAVGRPLYSNWPPALYFHANRIARELPDSTDPEDMAGFAERIRAN
                     HGYVVAFNERSPDFIAPETLARDIGLHQVVRTADGAVWAADTTAGVVTPRPDSASAPG
                     SAPGSAPAPAPAPAPTGRPGAPQLQY"
     gene            complement(872..1318)
                     /locus_tag="VLI40_02155"
     CDS             complement(872..1318)
                     /locus_tag="VLI40_02155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU95997.1"
                     /translation="MSYALGAHPTFGFVDGKPTVFSGIDAARDPHKQFLFSSAGLNVQ
                     AIMDEAILDIPHRRGGAFERGILAGGIATAYFYATLGRNAPNSDITYMASTSSLNRTT
                     ASLIYAGLATIQTIRIAHDGHYANFFMRPSPSGAISIGVAVLPDDR"
     gene            1569..1871
                     /locus_tag="VLI40_02160"
     CDS             1569..1871
                     /locus_tag="VLI40_02160"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HSU95998.1"
                     /translation="MKNTERPERLSDIAVQRGLGSLPGWARKGDVLSKTFQFETFPDG
                     IAFVTRVAEAAEAAQHHPDIDIRYTKVTCMLTTHDAGGITQKDLNMANEIEFAATR"
     gene            complement(1960..2637)
                     /locus_tag="VLI40_02165"
     CDS             complement(1960..2637)
                     /locus_tag="VLI40_02165"
                     /inference="COORDINATES: protein motif:HMM:NF013214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HSU95999.1"
                     /translation="MGFSLPVTSGLVRTGEERAQLVRRTYSLVFISVLVTVVGATYTM
                     SNEYILAQVTQHPWWSMAAVFVPLFAAQGARNRFPLNIALVLLFSFAMGALVGPSIVF
                     YSKGGTALVTQAATITIGAFGILTLYAFVSRRDFSAWGSFFVVGLWVLIATSVLNMFF
                     GNATSDIWLAGGTVLVFSGLLVFDTWRLRNVYGPEDYVMAALQIYLDLLNMFLAVLRL
                     LGGGRRN"
     gene            complement(2675..3400)
                     /locus_tag="VLI40_02170"
     CDS             complement(2675..3400)
                     /locus_tag="VLI40_02170"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HSU96000.1"
                     /translation="MRYIRHMAQPNTTAPGAQPRTRPIAVLFDLDGTLIDSIGLLLAS
                     VKHAFEGFAGRAPTEEEWVAGIGTPLARQLRAYCETEEQLEAVTTRYRIFQRASHDRL
                     TTVFPGTLEVLGSLAASGHPMGIVTSKSNEMMDRALDLTGIAPYMQSRIGCDSCAVHK
                     PDPFPVRMALGELGYEPAEAVFVGDSPHDINAGNAAGVESIAALWGPFRRDQLEIANP
                     THFLTDIAYLPALVERIQNRSAV"
     gene            complement(3442..>4212)
                     /locus_tag="VLI40_02175"
     CDS             complement(3442..>4212)
                     /locus_tag="VLI40_02175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96001.1"
                     /translation="LRELEIIARKSNLAAQIFGESATANVATRSPERASIQRGEHVRA
                     TIEKWRCTSADVIDPANGSYVAAFARAARSAALGVWIVDGNATLLSWNEAFEVSNDPG
                     VIEAVTDLADRAEDATCDEMVTRLSSILRSADSWYQQRCAWHALGAPAGNVTVPGVHD
                     ARRSLARVADAASANAHFARRSHSAALAARLRSAATTPLPLAVEWSLESLTGSPDEAT
                     VDTILELVDKARHTASHVQVKGLRPVALIVMSPAGISK"
BASE COUNT          804 a         1216 c         1379 g          813 t
ORIGIN      
        1 ggatggagtg ataccatcgt ccaggcgcgc gacacgcttg ccgagtggct cgcaccgcta
       61 ctttcggacg gaacgctgca gcgagcgatc gcactggttc tcaccgtcgc actggcggcc
      121 ttcgtcatca tggcggcgag cgacacgtcg ggcaatcgtc tcaagcggct tcgcgtcggt
      181 ggtttgtccg tgctactcgg cgccacttca ttacttggcg cgtgctatgt cgtcgtcatc
      241 gttgcatccc gtgcgtttgt tggcggcacg atcccgttcg actggcgcat tctggcgccg
      301 ttgatcgtgc taatcgagat agaagcagtc gcggcgatcg catattggtg gcgcgcatat
      361 cattttcccg cgcgcgtcgc gattgcgatc gttgcgctcg tctggctcgg cgcaaccacg
      421 actgcgactg tgaacgatgc ggtgtacgcg acgactgagg gaagcgattt cgccaatacg
      481 agctggcgtg attcgccact cactgcgtgg gttcgcgcga atgcagtggg ccggccgctc
      541 tattccaact ggccgccggc gctgtacttc cacgcgaacc gcatcgcgcg agagcttccg
      601 gacagcacgg atcccgagga catggcaggc tttgcggaac gtattcgcgc caaccatggg
      661 tatgtagtcg cgttcaatga gcgcagtccg gatttcattg ccccggagac gctcgcgcgc
      721 gacatcggac ttcatcaggt cgtgcgtacc gcggacggcg cagtatgggc cgccgatacg
      781 acggctggtg tggtcacgcc gcggcccgat tcggcttccg ctcctggttc tgctcctggt
      841 tctgctcctg ctcctgctcc tgctccggct cctaccggtc gtccgggagc accgcaactc
      901 caatactgat cgcgccgctt ggcgaggggc gcatgaagaa gttggcgtag tggccgtcgt
      961 gtgcgatgcg aatcgtctgg atcgtcgcga ggccagcgta gatgagcgat gctgtggttc
     1021 tgttcagcga cgaggtgctt gccatgtagg tgatgtcgct gttaggcgca ttgcgtccca
     1081 gtgtcgcata gaagtatgcc gtagcgattc cacctgcgag aattccgcgc tcgaaggcac
     1141 cgccgcgcct gtgtgggatg tcgagaattg cttcgtccat tatggcctgc acgttgaggc
     1201 cggcgctgga gaacagaaac tgcttgtgtg gatctctcgc ggcgtcgatt ccggaaaaga
     1261 cggtcggctt gccatccacg aagccgaagg tggggtgcgc gccgagggcg taggacattg
     1321 caacgtggcc cgcctcgtgc gcgagaatac tggtcgcgaa gccagtcgcc agattacgcc
     1381 aatagtgtcg ggatgtagta tgattcgtcg aatccggtac caacgtcagt gactggcagg
     1441 cgaaggcaca ttccgggctg ggcgcgcggg tcggttcgcg tattgcctgc gcggaggccg
     1501 aagcggtgta agcgaatgcc agcgcgacta atacggagat cccactcaaa tgtttggggg
     1561 caaggatcat gaagaataca gagcgtcctg agcggttgtc ggacatcgcg gttcagcggg
     1621 ggcttgggtc gctcccaggc tgggcccgga agggtgacgt gctttcaaag acgtttcagt
     1681 tcgagacatt cccggatggc attgcctttg tgacgcgcgt cgctgaagct gcggaagctg
     1741 cgcaacatca tcccgacatc gacattcgtt acaccaaggt cacctgcatg ctgacgaccc
     1801 acgacgcggg cggcatcacg cagaaggatc tcaatatggc gaacgagata gaattcgcgg
     1861 caacgaggta ggaggggcag gcacggaggc ctgcccatac aagtgcaaaa gaggcgcatc
     1921 caccaggatg cgcctctttg ttcagctcgg aactgtgcgc tagttgcgtc gtccgccgcc
     1981 cagcaggcgg agaactgcca ggaacatgtt gagcagatcg agatagatct gcagtgctgc
     2041 catcacgtag tcttccggtc cgtatacgtt gcgcaggcgc cacgtatcga atacgagcag
     2101 accgctgaac accagcacag tgccacccgc gagccagata tcgctcgtag cattgccgaa
     2161 gaacatgttg agcactgatg tagcgatcag aacccagagt ccgacgacga agaagcttcc
     2221 ccatgcggag aagtcacgcc ggctgacgaa ggcatagagc gtgagtattc cgaaggcgcc
     2281 tatggtgatc gttgcggcct gcgttaccag agcggtgccg cctttcgaat aaaagacgat
     2341 ggacgggccg accagtgcac ccatcgcgaa cgagaacagc agcaccagcg cgatgttcag
     2401 tgggaatcgg ttgcgtgctc cctgggcagc gaagagcggc acgaatacgg ccgccatcga
     2461 ccaccacgga tgttgggtga cctgcgccag gatgtactcg ttcgacatcg tgtacgtcgc
     2521 accgaccacc gtgaccagca cgctgatgaa aaccagcgaa tacgtacggc gtacgagctg
     2581 agcgcgctcc tcgccggtcc ggacaaggcc ggaagtgacg ggaagtgaga aacccatcaa
     2641 aggctccgat tgaaaggaag agattgcaac aatattacac cgcggagcgg ttctggattc
     2701 gttccacgag cgcaggcaga taggctatgt cggtcagaaa gtgcgttggg ttggctattt
     2761 cgagctgatc gcgccgaaaa gggccccaga gcgcggctat cgattccacc cctgcggcgt
     2821 taccggcgtt gatgtcgtgc ggtgagtcgc cgacgaaaac agcctcggca ggctcgtaac
     2881 ccagctcgcc aagtgccatg cggacgggga acggatcggg cttgtggacg gcgcaggagt
     2941 cacagccgat cctggactgc atgtaggggg cgatgccagt gaggtcgagg gcgcggtcca
     3001 tcatctcgtt ggatttgctc gttacgattc ccatcgggtg gcccgaagca gcgaggctcc
     3061 ccaggacttc cagggtgccg ggaaagacgg ttgtcaggcg atcgtgcgag gcgcgctgga
     3121 agatgcggta gcgggtcgtt acggcctcga gctgctcctc cgtctcgcag taagccctga
     3181 gctgcctggc cagcggggtg ccgatgccgg cgacccattc ttcctcggtc ggagcccgtc
     3241 cagcgaagcc ctcgaatgcg tgcttgacgc tggcgagcag gaggccgatg gagtcgatga
     3301 gtgtgccatc caggtcgaaa aggacggcga tcggacgtgt acgaggctgc gctccgggcg
     3361 cagtggtgtt cggttgagcc atatggcgaa tgtaacgcat cgcaactttc agtcgcatgg
     3421 ttctcgaacg atcgttcgac atcacttgga gatgcctgct ggcgacatca caatgagcgc
     3481 tactggacgg aggcctttca cctgcacatg actggcggta tgccgagcct tgtcgacgag
     3541 ctccaggatg gtgtcgacgg tggcttcgtc gggggaaccg gtgaggcttt cgagcgacca
     3601 ctccacggcc agcgggagcg gcgtcgtggc agcgctccgg agacgcgcgg cgagcgcagc
     3661 tgaatgcgat cttcgcgcaa agtgcgcgtt ggcgctcgcc gcatccgcga cacgcgcgag
     3721 ggagcgtcgc gcgtcgtgca ctccgggaac cgttacgttg ccggcgggtg cgccgagtgc
     3781 gtgccatgcg cagcgctgct gataccagga atcggcagac cggaggatgg atgacaggcg
     3841 tgtcaccatc tcatcgcagg tcgcatcttc cgcgcgatca gccagatcgg tgacggcttc
     3901 gatgacaccg gggtcgttac tcacttcaaa cgcttcgttc catgacagaa gcgtcgcatt
     3961 gccgtcgacg atccacacac cgagcgcggc cgatcgggcg gcgcgtgcga acgcagcgac
     4021 gtacgaaccg tttgccggat cgatcacatc ggcgctcgtg caacgccatt tctcgattgt
     4081 tgcgcgcaca tgttcgccac gttggatact cgctcgctcg ggtgagcgcg tggccacatt
     4141 ggcggtcgcc gactcaccga agatctgtgc ggcgagattg gacttgcgtg cgattatctc
     4201 cagctcacgg ag
//
LOCUS       DATIMD010000095         4670 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4367892, whole genome shotgun sequence.
ACCESSION   DATIMD010000095 DATIMD010000000
VERSION     DATIMD010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4670
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4367892"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3674)
                     /locus_tag="VLI40_02180"
     CDS             complement(<1..3674)
                     /locus_tag="VLI40_02180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96002.1"
                     /translation="MLGVDRLAERARAVARQEKIGPPPLGRGAGPLLRRLDDTRTVLT
                     EIQHALSDAAAHGIDISSAGEWLLDNYYIVQEHMREVRTALPHKYYQELPKLATGTLA
                     GYPRVYELAIELIGHTEGRLDLDNITLFTREFQRVSQLKLGELWAIPTMLRLGLVENI
                     RRMALRTAARLAEVQEADVWATRMRTSSAESSDALSQTLSTFIDNHPQLTPTFVARFL
                     GQIRSYQTNFTPLVWLEQWIAEDGLSAEDAVTRSNRRIAITQVTITNSIQSLRMIARL
                     DWNEFVESQSVTEKLLRDDPAHVYADMTFASRDEYRHVIEQIAKRTKRDEDSIANEVL
                     ALAREHPGDARMSHVGYWLIGEGRLTLEERTQYVPTFSERVYRWAKRHPSAVYFGVIS
                     VVTLLVFVVMLAIAPITTTGYALVLLLLLAIPASEVGVAVVNKLVTVIVPPHLLPKMD
                     FRDEGIPAQSRTAVVVPTLFATVASVREALEHLEVQYLANPDPNLHFVILSDFTDAKT
                     ETLAGDAHVVEAIERGVRGLNDKYRTANDTGPFLVFHRARRWNETEGVWMGWERKRGK
                     LAEFNRFLRGGSADAFPVIAGDPSRLTDIRYVITLDSDTVLPRGAAAQLVGTMAHPLN
                     RAEYDEARGRVTRGYGILQPRVGVALTSAYRSKFAAIHSGHPGVDPYTTAVSDVYQDL
                     YGEGSFTGKGIYDVNAFEEATHGRFPENTLLSHDLIEGTYTRAGLVTDIELYDDYPTR
                     YLAYTRRKHRWIRGDWQILSWLGTTVPGPDGPEPNRLSTLSRWKIFDNLRRSLVEIAL
                     LLLLLVGWFILPGSPMLWTVVVLVLIAFPWLLSAILEIVQPPTDQSLQAYYGAVARDI
                     MANAEQFALAVTFLPHQAWVSADAITRTVVRLYVTHRHMLEWQTASQVERAMRSGADR
                     EVYRRMWPAVVIGLLAGVGAMVSVYYMSDSVGMRVLAVVATIPLAILWLVSPSIASAL
                     SAPAIPGEIKLGDAERARAERYARLHWEFFSHFVTDKTNWLAPDNFQEDPEPEVALRT
                     SPTNIGLQLLATVSAADLGFITRQDMIERLEQMFRSLERMHRYRGHFFNWYDLTTLQV
                     LEPSYISTVDSGNLAGHFIALKQACIQIIHSLQPRTIEMEISGHSLAGGIVAARSGER
                     MQGTVAPGEDIGDECARLRAIADRAFAYASEMDFTFLYDERRKLFSIGYHTSASSFDN
                     SFYDLLASEARLASFMAIAKG"
     gene            complement(3888..4145)
                     /locus_tag="VLI40_02185"
     CDS             complement(3888..4145)
                     /locus_tag="VLI40_02185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96003.1"
                     /translation="MTTRFRAAVRTHCSTSEGDQDEVRRAVASAAAEAHNGGISAEQF
                     VIWVKRVWDEIMDEGTLANDPDPAHTREVVISSAIKAYYVQ"
     gene            complement(4295..>4670)
                     /locus_tag="VLI40_02190"
     CDS             complement(4295..>4670)
                     /locus_tag="VLI40_02190"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HSU96004.1"
                     /translation="LTDSERKSVERHPFFTWEILSRVPAFRDFAWSAALHHERLDGSG
                     YPWHLSGNRLDMTARILCVADVYEALTADRPYRPSLPWIESSRILDEGRGTAFDPTVL
                     DALATFRTAVADMTELVPLVAA"
BASE COUNT          901 a         1475 c         1412 g          882 t
ORIGIN      
        1 cccttggcga tcgccatgaa cgacgccagg cgcgcttcgg acgcaagcaa gtcgtagaac
       61 gaattgtcaa acgagcttgc gctggtatgg tatccgatgg agaacagctt tctgcgctca
      121 tcgtacagaa atgtgaagtc catctcggat gcgtacgcga acgcgcggtc cgctatcgcg
      181 cgcagtcgtg cgcattcgtc gccgatgtcc tcacccggcg cgacagttcc ctgcatccgc
      241 tcaccagacc gggctgccac gataccgcca gcgagcgagt gtcccgagat ttccatctcg
      301 atcgtgcgcg gctgcaacga gtggattatc tggatgcacg cctgcttcaa tgcaatgaag
      361 tgcccggcca gattgccact gtccacggtc gatatgtacg atggctccag cacctgcagc
      421 gtagtgagat cgtaccagtt gaagaaatgg ccgcgatagc ggtgcattcg ctccagcgat
      481 cggaacatct gctccagccg ctcgatcatg tcctgccgag tgatgaagcc aaggtcggcg
      541 gcgctgacgg tcgccagaag ctggaggccg atgttggttg gcgacgtacg caacgcaact
      601 tcaggctccg ggtcttcctg gaaattgtca ggcgccagcc agttggtctt gtcggttaca
      661 aaatgactga agaactccca gtgcagtcgc gcgtaccgct cggcgcgtgc ccgttcagcg
      721 tcgccgagtt ttatctcgcc gggaatcgcc ggtgcggaaa gcgcggacgc aatgctgggc
      781 gagactagcc acaggatggc gagcggaatg gtggcgacca cggccagcac gcgcatgccg
      841 acactgtcgc tcatgtagta gacgctgacc atcgcgccga cgcccgccag cagaccgatc
      901 accactgccg gccacatgcg acgatacact tcgcgatccg cgccggatcg catcgcgcgc
      961 tcgacctgcg atgccgtctg ccactccagc atgtgacgat gcgtcacgta cagccgcacg
     1021 acggttcgcg ttatcgcgtc cgccgagacc cacgcctgat gcggcaggaa tgtcaccgcg
     1081 agcgcgaatt gctcggcatt tgccatgatg tcgcgcgcga ccgcaccgta gtacgcctgc
     1141 aacgattgat cggtgggtgg ctgaacgatc tcgagaatcg ccgacaacag ccaggggaac
     1201 gcgatcagca ccagcacgac caccgtccag agcatcggcg agccaggcag aatgaaccag
     1261 ccgacgagca acaacagcaa cagcgcgatc tcgacgagcg agcgtcgcag attgtcgaat
     1321 atcttccagc gtgaaagcgt cgacagtctg ttgggctccg gaccgtcggg gccgggtacc
     1381 gtcgtgccca gccagctcag gatctgccag tcgccgcgaa tccagcggtg cttgcggcgc
     1441 gtgtatgcca gatagcgcgt tgggtagtcg tcatacagct cgatgtccgt cacgagcccg
     1501 gcgcgcgtgt acgtgccttc gatgagatcg tggctcagca acgtgttctc gggaaagcgg
     1561 ccgtgcgtcg cttcctcgaa tgcgttgacg tcgtagatcc cctttccggt gaagctccct
     1621 tcaccgtaca gatcctgata tacgtcggaa accgctgtcg tgtacggatc gacaccgggg
     1681 tgaccggaat ggatcgcggc aaacttggag cggtacgcgc tcgtgagcgc aacaccgaca
     1741 cgaggctgga gaatgccgta gccgcgcgtc acacgtccgc gcgcttcatc gtactcggcg
     1801 cgattcagcg ggtgcgccat ggtcccgacc agctgcgctg ccgctccgcg cggaagcacc
     1861 gtgtcggagt cgagtgttat gacgtatcgt atgtccgtca gtcgggaagg atcgccggca
     1921 attacaggaa acgcatccgc tgagccgccg cgcaggaacc ggttgaactc cgcaagcttg
     1981 ccgcgcttgc gctcccatcc catccacacg ccctcggtct cgttccacct gcgcgcacga
     2041 tggaagacga gaaacggccc cgtatcgttc gcggtcctgt acttgtcgtt gagtccccga
     2101 acgccgcgct cgatcgcctc caccacatgc gcgtcgccag caagcgtctc cgtcttcgca
     2161 tccgtgaaat cgctgagaat gacgaaatgg agattcggat ccggattcgc gagatactgc
     2221 acttcgagat gctccagcgc ctcgcgcact gacgcgacag tcgcgaacag cgttggaacc
     2281 acgacagcgg ttcgcgactg cgctggaatg ccctcgtcgc gaaaatccat ctttggaagc
     2341 aggtgtggcg gcacgatgac cgtcaccagc ttgtttacta ccgcgacacc gacttcgctc
     2401 gccggaatag ccagcagcag taacaacacc agcgcatacc cggtcgtcgt gatcggcgcg
     2461 atcgccagca tcacgacgaa caccagcagc gtcaccaccg agatcacgcc gaaatacacc
     2521 gcgctcggat gacgcttggc ccatcggtat acgcgttcgc tgaaagtcgg gacgtattgc
     2581 gtgcgctctt cgagtgtgag ccttccctcg ccgatgagcc agtagcccac gtgcgacatc
     2641 ctcgcatcgc ccggatgctc gcgcgcgagc gcgagcacct cattggcgat tgaatcctcg
     2701 tcgcgcttgg tgcgcttggc gatctgctcg attacgtggc ggtattcatc gcgtgacgca
     2761 aacgtcatgt ccgcgtacac atgagccgga tcgtcgcgca gcagtttttc cgtgacgctc
     2821 tgagactcga cgaattcatt ccagtccaga cgcgcgatca tgcgcagact ctggatgctg
     2881 ttcgtgatcg tgacctgtgt tatcgcgata cgccgattcg agcgcgttac cgcatcttcg
     2941 gcgctgagcc cgtcttccgc aatccactgc tcgagccaca cgagcggcgt gaagttcgtc
     3001 tggtaactgc gtatctgtcc gagaaaacgc gcgacgaacg tcggcgtcag ctgcggatgg
     3061 ttatctatga acgtcgacag cgtctgtgac agtgcatccg atgactccgc gctcgaagtc
     3121 cgcatgcgag tcgcccacac atcggcttcc tgcacctcag ccagtcgcgc cgccgtgcgt
     3181 agtgccatgc ggcggatgtt ctcgaccagg ccgagtcgca acatcgtcgg aattgcccac
     3241 agctcgccaa gcttgagctg cgacactcgc tgaaactcgc gcgtgaacaa cgtgatgttg
     3301 tcgagatcca gtctgccttc tgtatgaccg atgagctcga tcgccagctc gtacacacgc
     3361 gggtaacccg ccagcgtacc ggtcgcgagc ttgggcagct cctggtagta cttgtggggt
     3421 agcgcggtgc gcacctcgcg catgtgctcc tgtacgatgt agtagttgtc cagcaaccac
     3481 tcaccggccg acgagatgtc gatcccatgc gctgcagcgt cactcagagc atgctgtatc
     3541 tccgtcagta ctgtccgtgt gtcgtccagt ctgcggagca gcgggcccgc accgcgtccc
     3601 agcggcggag gtccgatctt ttcctgtcgc gcgaccgcgc gcgcacgctc ggcaagccgg
     3661 tcgacgccga gcacctcgcc tcggatagga gctacaagat gagctccgcg ggagccgtca
     3721 tcctcgtttc cggtccagga gaggaagcgc ttgaggacgt ttttttcggt tttgggggga
     3781 gaagcagtgg ccacgtagcg aaagttaaag acgccgccga agcggtgccc cgaatttgca
     3841 tggcggacgg gccggtgcgc gacgccatgc agtggggccg cccctaacta ttgcacgtag
     3901 tacgccttta tcgccgaaga gattacaact tcacgcgtgt gagccggatc cggatcattc
     3961 gcgagcgtcc cttcgtccat tatctcgtcc cacacgcgtt tcacccagat cacgaactgc
     4021 tcggcgctga tcccgccatt gtgcgcctct gccgcggcgg atgcgacagc tctccgtacc
     4081 tcgtcctgat cgccttccga agtcgagcaa tgggtccgca cggccgcgcg aaatcgcgtc
     4141 gtcatctctt cgcttagcac gcgcaaaata tacaacgtat gttttgggag gacatggcga
     4201 atccgggaat tgcggtgaac agtcgatcgg accgggcgag agtacatcga gagtacgtcg
     4261 agagcgcacg aggagccgcc cggacggcaa cgccttatgc agcgaccagt gggaccagct
     4321 cggtcatatc cgcgacggcg gttctgaaag ttgccagggc atcgagaacg gtcggatcga
     4381 aagccgtccc gcgaccctcg tccaggatgc gggacgattc tatccagggg aggctgggcc
     4441 ggtacggcct gtccgccgtc agggcctcgt agacgtcggc gacgcacagg atccgtgcgg
     4501 tcatgtcgag tcggttcccg ctcaggtgcc acggatagcc gctgccgtcc agtcgctcgt
     4561 gatgcagagc cgccgaccag gcgaaatccc ggaatgcggg tacgcgggaa aggatctccc
     4621 aggtgaagaa cgggtgccgc tcgaccgatt tccgctcgga atcggtcagt
//
LOCUS       DATIMD010000096         1537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4659712, whole genome shotgun sequence.
ACCESSION   DATIMD010000096 DATIMD010000000
VERSION     DATIMD010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4659712"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..408
                     /locus_tag="VLI40_02195"
     CDS             <1..408
                     /locus_tag="VLI40_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682302.1"
                     /note="negatively supercoils closed circular
                     double-stranded DNA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HSU96005.1"
                     /translation="AHIRTLLLTFLFRQMPELIEAGYIYLAQPPLYRVAKGKEEYYAY
                     DEKERDDLITRMGGNDGKTSVNIQRYKGLGEMNPDQLWKTTMDPNTRTLLKVDMQDAV
                     QANEIFQTLMGDDVEPRRQFIEANAKFVSNLDV"
     gene            625..1161
                     /locus_tag="VLI40_02200"
     CDS             625..1161
                     /locus_tag="VLI40_02200"
                     /inference="COORDINATES: protein motif:HMM:NF025710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4402 domain-containing protein"
                     /protein_id="HSU96006.1"
                     /translation="MKFVIRRMLLAAQLIAATLLATPAHAQSSASGSLAITAVVAAPL
                     QLVVTHALDFGRLLAATTKTIAPSAATGGRFELIGQGGSAVTVTLAMPSQLNPPSGTN
                     LPITNWTYLIGDNPTLTGTPVAFNSGTSDPIAARFQTFAGTTKLYFGIGATVQASAAQ
                     STMPYTGTGQITVTYTDL"
     gene            1158..>1537
                     /locus_tag="VLI40_02205"
     CDS             1158..>1537
                     /locus_tag="VLI40_02205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96007.1"
                     /translation="MRLRLVGGRAAKTGVAWCALGRLAGAQVAGIGVDPHMVVLTATR
                     PAGEITVLNPHATRAEFSVDLRFGYATTDAAGQLRVELNDEPDNASAASWVVPYPNRF
                     ILRPGGTRKVRLLARPPATLADGE"
BASE COUNT          298 a          518 c          451 g          270 t
ORIGIN      
        1 gcgcacatcc gcacgctgtt gctcaccttc ctgttccggc agatgccgga gctgatcgaa
       61 gcaggctaca tctatctcgc ccagccgccg ctctaccgcg tcgccaaggg caaggaagag
      121 tactacgcct acgacgagaa ggagcgcgac gatctcatca cgcgcatggg cggcaacgac
      181 ggcaagacct cggtcaacat ccagcgctac aagggactcg gtgaaatgaa ccccgaccag
      241 ctctggaaga ccaccatgga tcccaacacg cgtaccctgc tcaaggtcga catgcaggat
      301 gccgtgcagg ccaatgagat cttccagacg ctgatgggag atgacgtcga gccacgcaga
      361 cagttcatcg aggcgaacgc gaagttcgtg agcaacctgg acgtgtagcg caccgtcacc
      421 tgcggctgat tttgaaaaga gtccggcaat cttctgattg ccggactctt tcgttatcgc
      481 gcacacgtcc ttgcgccaca atctcccgca gcaaggattc gccaccgccc ggtcaccgcc
      541 gcttgtgctc gcgcgcactc ttccgcccta tactcggcgc gtatcactca tccgatccgc
      601 cgctgacgcg gcaggagtgt caccatgaag ttcgtaattc gccgaatgtt gctcgcggca
      661 cagttgatcg ccgccaccct actcgcgacg ccagctcacg cgcagagcag cgcgtccggc
      721 tcgctcgcca tcactgcagt ggttgctgcg ccgcttcaac tcgtcgtgac gcacgcgctc
      781 gatttcggcc ggctgctcgc cgcaacgacc aagacgatcg cgccatccgc agcgaccggt
      841 ggccgcttcg agctcatcgg acagggcggt tccgcggtga cagtgacgct ggcgatgccg
      901 tcgcagctca acccgccgtc cggaaccaac ctgcccatca ccaactggac gtatctgatt
      961 ggcgacaatc caacgctgac cgggacgccc gtggcgttca actcgggaac cagcgatccg
     1021 attgcggcgc gcttccagac ctttgccgga acgacgaagc tgtatttcgg gatcggtgca
     1081 actgtgcagg cgtctgctgc ccaatccacc atgccataca cgggcaccgg tcagatcacg
     1141 gtcacgtaca ccgacctgtg aggctgcgtc tcgtcggcgg acgagccgcc aagaccggcg
     1201 tcgcatggtg cgcactcggg agactcgccg gtgcgcaggt cgcgggaatt ggcgtcgatc
     1261 cacacatggt tgtgctgacc gccactcgtc cggccggaga gatcacggtg ctgaacccgc
     1321 acgcaacgcg tgcggagttc agcgtggacc tgcgattcgg ttatgcaacc accgatgcag
     1381 cgggacagtt gcgtgtcgag ctgaatgacg agccggataa cgcgagtgct gcgtcatggg
     1441 tcgttccata tcccaaccgt ttcatccttc gtccgggcgg cacgcgcaag gtgcgccttc
     1501 tcgcgcgacc gcccgcgacg ctcgcggacg gcgaata
//
LOCUS       DATIMD010000097         3447 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_39461, whole genome shotgun sequence.
ACCESSION   DATIMD010000097 DATIMD010000000
VERSION     DATIMD010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3447
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39461"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..927)
                     /locus_tag="VLI40_02210"
     CDS             complement(<1..927)
                     /locus_tag="VLI40_02210"
                     /EC_number="6.3.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017118 - lipoyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase"
                     /protein_id="HSU96008.1"
                     /translation="MLFIDNRDITDARVNLALEEHVLRNRMGSDDYLLFYINAPSIII
                     GRNQNTIEEVSPSVVAARGITVVRRISGGGAVYHDLGNLNFSFMTPSVHGRFNRYELF
                     TRPVIDVLHDLGVPAELGGRNDILAGGRKISGNAQFARPDRMFSHGTLLFDSNLDDVT
                     AALIPKPGKVESKGVKSIRSRVVNISEFLKRPITVTELRELIIERIFGTRDRSRIPTL
                     ELDAADWAEVDALVKRKYGSWDWNYGENPPCNVQRAHRFTAGEIDVRVNVEGGRVAAV
                     RIFGDFMGREDVAELEALMVGVPYDYASISAAL"
     gene            complement(911..2314)
                     /gene="arsN2"
                     /locus_tag="VLI40_02215"
     CDS             complement(911..2314)
                     /gene="arsN2"
                     /locus_tag="VLI40_02215"
                     /inference="COORDINATES: protein motif:HMM:NF008823.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic resistance N-acetyltransferase ArsN2"
                     /protein_id="HSU96009.1"
                     /translation="MDTLSDREILKANVQEKYGAAASRVATIVATGETPASCCGSSAC
                     CGATTEAWDPITSDLYDEGQTAGIPAEALLASLGCGNPTALAQLNAGETVLDLGSGGG
                     IDVLLSAKRVGPTGKAYGLDMTDEMLALANENRRKAGAENVEFLRGEIEQIPLPDNTV
                     DVIISNCVINLSADKKRVIAEAYRVLKPGGRLAVSDVVVRGTVPPEVRRNMELWIGCV
                     AGALGEQEFLTLLRDAGFENPSIEPTRFYSAEDAMAFLAGSGLDAESFAREIDGKFFS
                     GFVRATKPAKSEGTSCCGPDCCGTNEEAPIAMTKKPARSIAFRSAEAGDRAAVERLLN
                     SLGLPIAGVPDDLRNFVVATHGGDVIGVTGLELADANAVLLRSVGVDPAHRKNGVARR
                     LVALAIEDARSMNIRSVYLLTPSAATYFARWGFVVSDRSEIPAALAATSEFQGACSES
                     TTLMKLDLFNQPDAVHR"
     gene            complement(2409..2756)
                     /locus_tag="VLI40_02220"
     CDS             complement(2409..2756)
                     /locus_tag="VLI40_02220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HSU96010.1"
                     /translation="MPAQAPHFSARAAQIFHALSDETRIGIVELLVGGERCVCELQDT
                     LDAAQSRLSFHLKVLKDAGIVNDRREGRWSYYELNRGAFEEAEEMIRELRPRARRTSL
                     RVMTSTRSNECCE"
     gene            complement(2865..>3447)
                     /locus_tag="VLI40_02225"
     CDS             complement(2865..>3447)
                     /locus_tag="VLI40_02225"
                     /inference="COORDINATES: protein motif:HMM:NF042734.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta family hydrolase"
                     /protein_id="HSU96011.1"
                     /translation="LFAHGSGSSRFSPRNKFVADILRESGFATLLLDLLTQEEESVDV
                     RTRELRFDLQLLAHRLVDAIDWLAHQELTRELPIGLFGASTGAGAALMAAARRPEQVQ
                     AVVSRGGRPDLAGDALAAVHAPTLLIVGGDDKVVIDLNRAAMAQMSSAVRLEIVPGAT
                     HLFEERGALDAVANLARRWFTDYLAPPIPSPRS"
BASE COUNT          659 a         1132 c         1004 g          652 t
ORIGIN      
        1 gagcgcggct gatatcgatg cgtagtcgta cggaacaccg accatcagcg cctcgagctc
       61 cgcaacgtct tcgcgtccca tgaagtcacc aaagatgcga accgcagcga cacgcccacc
      121 ctcgacgttc acgcgcacat cgatttcgcc agccgtgaac cggtgcgcac gctgcacgtt
      181 gcacggcgga ttctcgccgt aattccagtc ccacgacccg tacttccgct ttaccagcgc
      241 gtccacttcg gcccagtcgg ccgcgtccag ctcgagtgtc gggatcctgc tcctgtcgcg
      301 cgttccgaag attcgttcga tgatgagctc gcgcagctcc gtgacagtga ttggacgttt
      361 aagaaattca cttatattca cgacacgact gcgaatcgac ttcactccct tggattcgac
      421 cttgccgggc ttcgggatca gcgcggcggt aacgtcgtcg aggttggaat cgaacagcaa
      481 tgtaccgtga ctgaacattc tgtccggacg cgcgaactgc gcgttgcccg aaatctttcg
      541 gccgccggca agaatatcgt tccggccgcc cagctccgcc ggcacgccaa gatcgtgcag
      601 gacgtcgatc accggccgcg tgaacagctc gtatcggttg aagcgcccgt gcaccgacgg
      661 cgtcatgaag ctgaagttca gattaccgag gtcgtgatac actgccccgc cgcctgaaat
      721 acgccgcacg actgtaattc cgcgcgcggc gacaaccgac ggactcactt cttcgatcgt
      781 attctgattc cgtccaatta ttatcgacgg cgcgttgatg tagaacagca ggtaatcgtc
      841 gctgcccatc cggttgcgga gcacgtgctc ctccagcgcc agattgacgc gagcgtccgt
      901 tatgtcacga ttatcgatga acagcatcag gttggttgaa gaggtcgagt ttcatcagcg
      961 tggtcgattc ggagcacgcg ccctgaaact cggacgtcgc cgcaagcgca gccggaattt
     1021 ccgagcggtc actcacgacg aatccccagc gcgcgaaata tgtcgcggcg gagggcgtga
     1081 gcagatacac gctgcgtatg ttcatgctgc gcgcgtcctc gatcgccaat gcgacaagcc
     1141 gtcgggcgac gccgttcttc ctgtgagccg gatcgactcc gacggatcga agcagcaccg
     1201 cgttcgcgtc cgcaagctcg agtcccgtga caccgatgac gtcgccaccg tgcgttgcga
     1261 cgacaaaatt gcgcagatca tccggaacgc cggcgatcgg caggccgagg gagttgagaa
     1321 ggcgttccac cgcagcacgg tcgcccgctt ccgcggaacg gaaagcgatg ctccttgccg
     1381 gcttctttgt cattgcgatt ggcgcctctt cgttggtccc gcagcagtcc gggccgcagc
     1441 acgatgtgcc ttccgatttc gcaggcttgg ttgcgcgtac gaacccactg aaaaatttac
     1501 catctatctc gcgcgcgaac gactccgcgt cgagaccact gcccgccagg aatgccatcg
     1561 catcttcggc gctgtagaat cgcgtcggct cgatgctagg attctcgaac ccggcatcac
     1621 gcagcagcgt caggaattcc tgttcgccga gcgcgccggc aacgcacccg atccacagct
     1681 ccatgttgcg gcgtacctca ggtggtaccg tgccgcgaac cacgacatcg gacactgcaa
     1741 gccgtccgcc tggcttgagc acacgatacg cttcagcgat cacgcgcttc ttgtccgccg
     1801 acagattgat gacacagttg gagatgatga cgtcgacagt gttatccggc agtggaatct
     1861 gctcgatctc gcctcgcaga aactcgacgt tctccgcacc ggccttgcgc ctgttctcgt
     1921 tcgcgagcgc cagcatctca tcggtcatgt cgagaccgta cgccttcccg gttggtccga
     1981 cgcgctttgc ggacagaaga acgtctatgc cgccgccgga gccgaggtcg agcaccgtct
     2041 caccggcgtt cagctgtgcg agcgccgtgg ggttgccgca tcctagcgac gcgagcagcg
     2101 cttccgccgg aattcccgcg gtctggccct cgtcgtagag gtcggacgtt atcggatccc
     2161 acgcctccgt agtcgcgccg cagcaggcgc tcgagccgca gcacgacgcc ggcgtttcgc
     2221 cggtcgcgac gatggtcgcg actctcgacg cggccgcgcc atacttctcc tgcacgtttg
     2281 ccttcaggat ttcgcgatcg ctcagcgtgt ccatggtgcg cacctcatat caagaaatgt
     2341 tgatggattg gtcaaaaaaa acagccgaaa ctcgttcaca actaattcgc agcaatcatt
     2401 cgcagcaatc attcgcaaca ctcattcgag cgggtgctgg tcattacccg gagggaggtc
     2461 cgccgcgcgc gcgggcggag ctcgcggatc atctcttcag cctcttcgaa cgccccgcgg
     2521 ttcagctcgt agtacgacca acgtccctct cgccggtcgt tcacgatgcc cgcatccttg
     2581 agcaccttga gatggaacga cagtctggac tgcgccgcgt cgagggtgtc ctgcagctcg
     2641 cagacgcagc gctcaccgcc gaccagcagc tcgacgatgc cgatacgcgt ctcgtccgaa
     2701 agcgcgtgaa agatctgcgc ggcgcgcgcg ctgaagtgtg gggcctgagc tggcatgaga
     2761 gtaacgtatc aatatttctt gatatgtcaa gagtccggac ttgagagcag gcattccgga
     2821 ccgcgataca ccgcggtaca ccgcgataca ccgcggcaca cctctcaact gcgcggagac
     2881 gggattggcg gcgcgaggta gtcggtgaac caccggcgtg cgagattcgc gaccgcgtcg
     2941 agagcgccgc gctcctcgaa caggtgcgtc gcgcccggga cgatctcgag ccgcaccgct
     3001 gagctcatct gtgccatcgc cgcgcggttg agatcgatga ctaccttgtc gtccccgccg
     3061 acgatcagca gcgtcggcgc gtgtaccgcg gccagcgcat cacctgccag gtcgggacgg
     3121 ccgccacgtg agacgactgc ctgcacctgc tccggacgac gtgcggccgc catcaacgcc
     3181 gcacccgcgc cggtgctcgc tccaaaaagc ccgatgggca gctccctggt caattcctga
     3241 tgcgcgagcc agtctatcgc gtctaccaga cggtgcgcca gcaactgcag atcgaagcga
     3301 agctcccgcg tacgcacgtc cacggattcc tcctcctgcg tcagcagatc cagcagcaac
     3361 gtcgcgaagc cggattcgcg caggatgtcg gcaacgaatt tgttgcgagg actgaagcga
     3421 ctggagccgc ttccatgcgc gaaaaga
//
LOCUS       DATIMD010000098         3279 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2927450, whole genome shotgun sequence.
ACCESSION   DATIMD010000098 DATIMD010000000
VERSION     DATIMD010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3279
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2927450"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1633
                     /locus_tag="VLI40_02230"
     CDS             <1..1633
                     /locus_tag="VLI40_02230"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSU96012.1"
                     /translation="PRMGCGPQHTSSVTISFKWRHSVSASLRLAALTALVTGAAACTR
                     ESQIGKATGLGGTLVVATAGDADNLFPPLTLTSQGRQVVDQIFDYLADIGPELNTIGD
                     GGFTPRLADSWTWAPDSSWIAFHINSHARWHDGQPVRASDVRFTFRLLMDSTLASPVA
                     ATLKGIDSVSVRDSLTAVVWYTRRTPEQFFNFVYNVAILPEHLLRDVPVKSLASSQFA
                     RHPVGSGRFRFGRWDGGSRIEIVSDSNNYRGRARLDRVVWLVSPDMQAATTRLLAGEA
                     DFLEVVRGPAVNQVVASPRVRLLTSPSLDYGFMAFNVRRAPFNNRDVRRALSMAVDRS
                     AMARNVFDTLALPGLGPVTRALPVSARTAALPYDSAAAAKILAAYGPISFRLLVPTSS
                     AVRMKYATLLQEQYRRLGVTVTIQPMEVNAFVQRLTKSDFDAVLNAWHSDPSPAAVVQ
                     AWGKAGAPPEGANFVGYASPSFDALVDSGARAFDPARARGYYARAYQEIDGDAPAVWL
                     YEARNASGVNRRVHVAGIRADAWWSGLPDWTVDRR"
     gene            1807..>3279
                     /locus_tag="VLI40_02235"
     CDS             1807..>3279
                     /locus_tag="VLI40_02235"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HSU96013.1"
                     /translation="MFQPRSAAAVVVLFGALAAGAQQPTPQQTEATRRGAGDTSIFAP
                     LDLYPSPNVYRTGDGRPGARYWQQRADYDLHATLDTANKSLSASMTMRYTNNSPDTLR
                     FIWVQTEQNAFRPGSLNTLVFAPDSRFGSRSFVGGDVIDHFNQVVNGRATPLKLRDNG
                     TVTKVDLAQPLAPGKTATFDAAWHFLIPEHGADRMGRDGSLFEVAQWYPRVNVYDDVR
                     GWNTEPYLGQGEFYLEYGDFNLSVTLPSGYIVAATGTLVNPRDVLTATEISRLAKAAK
                     SDTPVPIITASDLTSGAARPRTTGTMTWRFKAHNVRDVAWAASPDYQWDASSWKGILA
                     QAYYRPSAAINWDDAADQARMSIQEYSERWFMYPYPQITAVEGPISGMEYPMLAMETK
                     SRDKPDLYNVITHEIGHDWFPMIVGSNERVQFWQDEGFNTFINTFSEARRYPQNGNQM
                     QRAAEERAQVEQSQKLNIDVPIITNPDRIDPRKLGFTEYVK"
BASE COUNT          623 a         1000 c         1023 g          633 t
ORIGIN      
        1 tcctcgaatg ggctgcggcc cacaacacac gagcagcgtg accatctcgt tcaagtggag
       61 acatagcgta agcgcatcgc tgcgattggc tgctctcaca gctttggtaa ccggcgccgc
      121 tgcgtgcacg cgtgagtcac agatcggaaa ggcgactggt ttaggtggca cgctcgtcgt
      181 cgccaccgcg ggtgacgccg acaatctgtt tccaccactc acgctgacaa gtcagggtcg
      241 tcaggtggtg gatcagatat tcgattatct ggctgacatc gggcccgagt tgaatacgat
      301 tggcgacggc ggattcacac cgcggctcgc ggattcgtgg acctgggctc cagattcgtc
      361 gtggatagca tttcacatca attctcacgc gcgctggcac gacggacagc cggttcgcgc
      421 gagcgatgtt cgctttacat tccggctcct gatggactcg acgctcgcgt cgccggtcgc
      481 ggcgactctc aaggggatcg attctgtaag cgtacgagac tcgctcaccg ccgtcgtgtg
      541 gtacacgagg cgcactccgg aacagttttt caatttcgtc tacaacgtcg cgatactgcc
      601 agagcatctc ctgcgggacg ttccggtgaa gtcgctcgct tcatcgcagt tcgcgcgaca
      661 tcccgttggc agcggtcgat tccggtttgg caggtgggac ggcggatcgc gcatcgagat
      721 cgtgagtgac agcaacaact atcgcggacg tgccaggctc gatcgcgttg tatggctggt
      781 atcgccggac atgcaggccg caactacacg gctgctcgcg ggagaggccg atttcctcga
      841 ggtcgtgcgt ggacccgctg tgaatcaggt ggtcgcatcg ccgcgcgtca ggctgctgac
      901 gtcaccaagt ctcgattacg gctttatggc cttcaacgtg cgacgtgccc cattcaacaa
      961 cagggacgta cgtcgtgcgt tgagcatggc cgtggatcgc tcggcgatgg cccgcaacgt
     1021 gttcgacacg ctggcgcttc ccgggctcgg gcccgtgaca cgcgcattgc ctgtgagcgc
     1081 gcgaaccgct gcgctgccct acgactccgc agcggcggcg aagatactcg ccgcctacgg
     1141 tccgatatcg ttcaggttgc tcgttccaac gtcgagtgcg gtgcgcatga aatacgcgac
     1201 gctgcttcag gagcagtatc gacgcctggg tgtgactgtg acgatccagc ccatggaggt
     1261 caacgcgttc gtgcagcggc ttacaaagag tgacttcgac gcggttctga acgcgtggca
     1321 ttcggacccg agtcccgcgg ccgtggtcca ggcgtggggg aaagcgggtg cgccgcccga
     1381 gggcgccaat ttcgtgggct atgcgagccc cagcttcgac gcgctggtgg acagtggcgc
     1441 ccgggcgttc gatccggcgc gtgcgcgcgg ctattatgcg cgtgcctatc aggaaattga
     1501 cggtgacgct ccggccgtct ggctgtacga ggcccgcaac gcgagcggcg tgaaccgtcg
     1561 agtacatgta gccggcatcc gcgccgacgc atggtggtct ggccttccgg actggaccgt
     1621 cgacaggcgc tgatgtccga ttccgtacgg aatgggcacg ccgtgtgcag tcctgcgggg
     1681 tgatgaatac aattcaggga gtccaaccgg ttagatcagc tccgtgacta accattttgg
     1741 atgaccgccg gcagcgcgcc gcggtcccgc tggtcaccag atcccattct tccggagtaa
     1801 tcagaaatgt ttcagccaag atcggccgct gcggtggtcg ttctcttcgg cgcgctcgcg
     1861 gccggtgcgc aacagccgac tccacagcag accgaagcga cgcgcagagg agctggcgac
     1921 acgtcgatct ttgctccgct ggatctgtat ccatcaccca acgtgtacag gaccggcgat
     1981 ggccggcccg gtgcacgtta ctggcagcaa cgcgccgact acgatcttca cgcgacgctg
     2041 gatacggcga acaagtcact cagcgcatcg atgacgatgc gatacaccaa taactcgccg
     2101 gatacgctgc gattcatctg ggttcagacc gagcagaacg cattccggcc gggttcactg
     2161 aacactctcg tattcgcgcc cgacagtcgc ttcggctcgc gcagtttcgt cggtggtgac
     2221 gtgatcgacc atttcaatca ggtggtgaac ggccgcgcta ctccgctcaa gttgcgtgac
     2281 aatggaacgg tcaccaaggt cgatctggcc cagccactcg ctcccggcaa gaccgctacc
     2341 ttcgacgccg catggcactt tctcattccc gagcacggtg ccgatcgcat gggtcgcgac
     2401 gggtcgctgt tcgaggtcgc tcagtggtac ccacgcgtga acgtatacga cgacgtgcgt
     2461 ggctggaaca ccgagccgta tctcggacag ggcgaattct atctcgagta cggcgacttc
     2521 aatctgagcg tcacgcttcc gtcgggctat atagtggccg cgaccgggac gctcgtgaac
     2581 ccgcgagacg ttctcacggc aaccgagatc agccgtctcg cgaaggcggc caaatccgat
     2641 acgccagtac cgatcatcac tgcatcggat ctcaccagcg gtgcggcgcg cccgcgcact
     2701 accggcacga tgacgtggcg cttcaaggcg cataatgtgc gcgacgtcgc gtgggcggcg
     2761 tcacctgact atcagtggga cgcgtcgagc tggaagggta ttctcgcgca ggcgtattat
     2821 cggccgagcg cggccatcaa ctgggacgac gcggccgacc aggcgcgcat gtcgattcag
     2881 gagtattcgg agcgctggtt catgtatccg tatcctcaga tcacggctgt cgaagggcca
     2941 atcagcggca tggagtatcc gatgctcgcg atggagacca agagtcgcga caagccggat
     3001 ctgtacaacg tcatcacgca tgagatcgga cacgactggt tcccgatgat cgtcggttcc
     3061 aacgagcgcg tgcagttctg gcaggacgag ggtttcaaca cgttcatcaa cacgttcagc
     3121 gaagcgcgtc gctatccaca gaacgggaat cagatgcagc gggccgccga ggagcgtgca
     3181 caggtcgagc agtcgcagaa gttgaacatc gacgttccga tcatcaccaa tcccgaccgc
     3241 atcgatccgc gcaagctcgg cttcaccgaa tacgtcaag
//
LOCUS       DATIMD010000099         2831 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2638379, whole genome shotgun sequence.
ACCESSION   DATIMD010000099 DATIMD010000000
VERSION     DATIMD010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2831
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2638379"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2831)
                     /gene="sprA"
                     /locus_tag="VLI40_02240"
     CDS             complement(<1..>2831)
                     /gene="sprA"
                     /locus_tag="VLI40_02240"
                     /inference="COORDINATES: protein motif:HMM:TIGR04189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell surface protein SprA"
                     /protein_id="HSU96014.1"
                     /translation="NLGEGIKLRSIVAQQKGNVVRDRVFTVGDHVLQAVDRTVEDYQF
                     EPRRFFFTVDPKLFAGYPNIDILNRQQMSKLAAALPDTLRPAAIYVYRLLIGGQPPNP
                     NGPQFRIIGDSRSQKGQVYELLREGVDYYSDPSRLWIALVRPLSLNNERLVVAYRVRI
                     GGILTTHVTTGGTPDLEFSTAHDQFANLLWDPNVQPTDAAFRHEIRSVYRLGGSDVVR
                     QSVSVKVVTGNATDQEKPVTGHAATYLQLFGLSQPTNSSTFDVENRLWPRPTDPNFAL
                     GVGAFATPTIRDQFLVFPSVRPFASNGMAGVGNPHNDTVYTTPADYLISSQRPGAVYH
                     IRLRYQAQGNGTNGTLSLGAVQVRPNSERILVDNVLLARGSDYSVDYDLGRVNFARPD
                     TLFPRPRQVTVQFEENPLFVETPTSIFGSSLEIPLSNGQINILGLSQSQKSTYTRPAL
                     GLEPQSMLIGGISATMNFDADGLTRLVSKLPYGHTDVPSHVSLAGEFAASKPQPSAGQ
                     QAYLESFEEAGGLNVLLGDQYWYYSSQPAVAHNVLAKYGPNLLDINHATQLAFQTNIR
                     DSLGKQIQFTIDKIDPEVAFSGVGAAAPEQILWLTMYPLSRGLRDDQNSNAHWTTGVT
                     SMGRRWRSIRTSLSPSGADVSRTENVEFWALVDTSAAGRARNPTLVFDVGEISENSVV
                     FQPDTIRIHALNALLRDTVMLGRRLSGFDKLNSERDPFSRAFNANANDTGLPGDVADS
                     AVVIADTIPGQLPIPRIVPKFAICRNQYGALYQVGDTRTDCTVGNGRLDEEDLDGDNV
                     LNLNSTQREQEQIRRFVVDLSDERKFNRVGKCIERPTARGETVPRSPACWVFVRVPFR
                     APDDTLNSPLLSRARALRITMISGAGVPDTAFSQVALDQLRLTGAPWLKRNDAAIRGI
                     AGEQPDLGFVTVGTVGTQDRGVSGGVNYD"
BASE COUNT          548 a          842 c          888 g          553 t
ORIGIN      
        1 aatcgtaatt cacgcctccg gatacgccgc ggtcctgcgt gcccacggtg ccgacggtga
       61 caaaaccgag gtcgggctgc tcgccagcga ttccgcggat cgccgcgtcg ttgcgcttga
      121 gccacggggc gccggtaagg cgaagctgat cgagcgccac ctggctgaat gcggtgtcag
      181 ggacccccgc gcccgagatc attgtgatgc gcagcgctcg agcgcgactc aacagcggcg
      241 aattcaacgt atcatcgggc gcgcggaacg ggacgcgcac gaaaacccag cacgccggcg
      301 aacgcggcac ggtttccccg cgcgcagtcg gccgctcgat gcactttccg acgcgattga
      361 acttccgttc gtcggaaaga tccacgacga accgtcgtat ctgctcctgt tcgcgctgag
      421 tgctattgag attgagcacg ttgtcgccgt cgagatcctc ctcgtccagg cgtccattac
      481 caacggtgca atcggtgcgc gtgtcgccga cctgatagag cgcgccgtac tgatttctgc
      541 agatcgcgaa cttcggaaca atccgcggga tcggcaactg gcccgggatc gtgtcagcga
      601 tgactactgc actgtcagcg acatctcccg gcaaccccgt gtcgttcgcg tttgcattga
      661 acgcccgtga gaacgggtcg cgctcgctgt tgagcttgtc gaatcccgac aggcgacgtc
      721 ccagcatcac agtatcacgc aataaggcgt tcagcgcatg gatgcgaatc gtatcgggct
      781 ggaataccac cgagttctcg gagatctctc ccacatcgaa tacgagcgtg ggattgcgtg
      841 ctctgccggc ggcggacgta tcgacgagcg cccagaattc aacgttctcg gttcgtgaca
      901 cgtcggcgcc ggatggactg agcgatgttc tgatcgagcg ccatcggcga cccatcgacg
      961 tcacaccagt ggtccagtgt gcgttgctgt tctggtcatc gcgcaacccg cgcgacaacg
     1021 gatacatcgt gagccacaat atctgttcgg gcgcagcagc accgacaccg gagaaggcaa
     1081 cttccggatc gatcttgtcg atcgtgaatt gaatctgctt cccgagcgag tcgcggatgt
     1141 tggtctggaa cgccaactga gtcgcgtgat ttatgtcgag gagatttggc ccgtacttcg
     1201 cgagcacgtt atgcgctaca gcgggctggc tgctgtaata ccagtactga tcacccagca
     1261 gtacgttcag cccgcccgcc tcctcgaacg attcgagata tgcctgctgc ccggcactcg
     1321 gctgcggctt gctcgcggcg aattctccgg cgagcgaaac gtgcgacgga acgtcggtgt
     1381 gaccgtacgg cagtttcgac acgagtctgg tcagtccgtc ggcgtcgaag ttcatcgtcg
     1441 cactgatgcc gccgatgagc atcgattgcg gctccaggcc gagcgcgggt cgcgtgtatg
     1501 tactcttctg cgattgcgac agcccgagga tgttgatctg cccgttggac agcgggatct
     1561 cgagcgacga gccgaatatc gacgtcggag tttccacgaa cagcggattc tcctcgaact
     1621 gcaccgtcac ctggcgcgga cgcgggaaca acgtgtccgg ccgcgcgaaa ttcactcgac
     1681 caaggtcgta gtccaccgag tagtcacttc cgcgcgcaag cagaacattg tcgacgagaa
     1741 tgcgctcgga gttggggcgt acctggaccg cgccaagtga cagcgttcca ttcgtgccgt
     1801 taccctgcgc ctgatagcgg aggcgtatgt gatacaccgc accgggtcgt tgtgacgata
     1861 tgaggtagtc tgcaggcgtg gtgtagaccg tgtcgttgtg cggattccca acgccggcca
     1921 tgccgttgct cgcgaaggga cgcaccgagg ggaagacaag gaactgatcg cggatcgttg
     1981 gcgtcgcaaa agcaccgact cccagcgcga agttgggatc ggttggacga ggccagagac
     2041 ggttctcgac gtcgaaggtc gagctgttgg ttggttgcga cagtccaaac agctggagat
     2101 acgtggcggc gtgacctgtg accggttttt cctgatcggt cgcgttgccg gtaacgacct
     2161 ttacactcac gctctggcgc acgacgtcgc tgccaccaag gcgatagacc gatcggatct
     2221 cgtgccggaa cgcagcatcg gtgggctgta cgttcggatc ccagagcaga ttcgcgaact
     2281 ggtcatgtgc cgtggagaat tcgagatcgg gagttccgcc ggtagtcacg tgcgttgtca
     2341 gaatcccgcc gatccgcacg cgataggcta cgacgagtcg ctcgttgttg agtgacagag
     2401 gacgcacgag cgcgatccag agccgcgatg gatccgagta atagtccacg ccctcgcgaa
     2461 gcagctcgta cacctgcccc ttctgcgatc gggaatcacc gatgatgcgg aactgcgggc
     2521 cattcgggtt gggcggctgg ccgccgatca acagccggta tacgtagatg gcggccggcc
     2581 gcagcgtatc aggcagcgcg gcagcaagct tactcatctg ctgccgattg agaatgtcga
     2641 tgttgggata tcccgcgaac aacttgggat cgacggtgaa gaagaagcga cgcggctcga
     2701 actgataatc ctcgacggtg cggtcgactg cctgcagaac gtgatcgcca acggtgaaca
     2761 cgcggtcgcg gaccacgttt cccttctgct gcgcgacgat gctgcgcagc ttgatgccct
     2821 cgccgaggtt c
//
LOCUS       DATIMD010000100         2621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_618552, whole genome shotgun sequence.
ACCESSION   DATIMD010000100 DATIMD010000000
VERSION     DATIMD010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_618552"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(29..766)
                     /locus_tag="VLI40_02245"
     CDS             complement(29..766)
                     /locus_tag="VLI40_02245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96015.1"
                     /translation="MLAACNPDKATAPTPGNSNDLATNANVASVAASAAGDRLAFSPE
                     AHPYGQNMITWSEDWWKYIISIPTDSNPELDMTGADCTVSQHGKVWYLALLGTGTVTR
                     TCTIPHGRALLVNLSGVLNDYPCPDTTFHPAAGQSLQDFLTQGAMQSVDLVNALTLTV
                     DGHEVPNLFSYRFTSPLFQFTGNTTLQTTLDGCITGQPQPAVSDGYFVMLRPLSTGTH
                     VVVFASSDTHNNHTSVTYDITIRDGDD"
     gene            complement(917..1642)
                     /locus_tag="VLI40_02250"
     CDS             complement(917..1642)
                     /locus_tag="VLI40_02250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96016.1"
                     /translation="MVKPNVRASLTRDDAQLALHVIASGRIADLEEGERRLAHDGVDV
                     LLDDPRLLIGLLRTDRGVIASYALLTYVVMRHALTRVGESDRVLADFLASLFMEFGVR
                     DRAQRISRFDDETYGTLGAILAAADSSDPKRSFLAREHLGNYALWVSGVFPDHIEERR
                     WRKGGPDLDYYESMGRRGYELAAKHRLAQEAGISDFYTLAADRFRVMRIALTSVSDAL
                     LFPNSNSPTSIIRRVEDDFRLMS"
     gene            1843..2322
                     /locus_tag="VLI40_02255"
     CDS             1843..2322
                     /locus_tag="VLI40_02255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96017.1"
                     /translation="MAAQDAPKDSAAAVSPVQQNAWISAGIGGGGAGGNGVAGVVSGW
                     YAHGPYVVGARASEGGPLFGGRQVREKAALVGWRARSAHTFALVGVGGGTMNGWRSNG
                     EQSGTRTTYGDEPSIAFAAEAGVTYYAIGIGLDVFGASNHRTSYAGIALSVQLGYLK"
BASE COUNT          528 a          761 c          804 g          528 t
ORIGIN      
        1 ccgcaatgtg accgtactat ttcacgcgtc agtcatcccc atcgcgaatt gtgatgtcgt
       61 acgtgacgga cgtgtgattg ttgtgcgtat ctgacgatgc gaacacaact acgtgcgtgc
      121 ccgtactcag cggacgcagc atgacgaaat acccgtcgga gacagccggt tgaggctgcc
      181 ccgtgatgca tccgtcgagc gtggtctgga gcgtcgtgtt tccagtaaac tggaataatg
      241 gcgacgtgaa ccggtagctg aacagattcg gcacctcgtg accatccacc gtcaacgtca
      301 gcgcattcac gagatcgacg ctctgcatcg cgccctgtgt gagaaagtcc tgcagagact
      361 gaccggcggc gggatggaag gtcgtgtcgg gacacgggta atcgttgagc actcccgaca
      421 ggttcaccag cagtgccctg ccatgcggaa tagtgcaggt gcgcgtgact gttccagtgc
      481 caagaagggc gaggtaccac acctttccgt gttgactcac cgtgcagtcc gcgcccgtca
      541 tgtccagctc cggattgctg tcggtcggaa tcgagatgat gtacttccac cagtcctcac
      601 tccaggtgat catgttctgg ccgtaaggat gcgcttccgg cgaaaacgcc agccgatcgc
      661 cggctgcgct ggctgcgacg cttgcgacgt tcgcgttcgt ggcaaggtca ttcgagtttc
      721 ccggcgtcgg ggcggtggcc ttatccggat tgcatgcggc gagcattgca agcggagcta
      781 agagcaacag acgactgtac gaacgcatga cgtctctcct gggtgggtgt acaagtgcaa
      841 tattgccagt acatccacag ccggtagagc cagtttcggg aacgacgact ggaccagtcg
      901 gtctacgaca cgatggttac gacatcagcc tgaaatcatc ttccacccgc cggatgatac
      961 tcgtcggcga attggaattg ggaaacagca gcgcatcgct caccgaagtc agcgcgatgc
     1021 gcatcacgcg aaagcgatcg gcagcgagtg tgtagaagtc gcttatgccc gcctcctgag
     1081 ccagtctgtg tttcgcggcg agctcgtagc cccgtcttcc catcgattcg taataatcga
     1141 gatccggacc gcccttgcgc cagcgtcgct cctcgatgtg atccggaaat acaccgctga
     1201 cccagagcgc gtagttgcca agatgctcgc gtgccagaaa actccgcttg ggatccgagc
     1261 tatcggctgc ggcgaggatc gcgcccagcg tcccgtaggt ttcgtcatcg aagcggctga
     1321 ttcgttgagc acggtcacga acgccgaatt ccatgaagag tgatgcgagg aagtccgcca
     1381 gcacacggtc gctctctccg acccgagtca gcgcatggcg catcaccaca tacgtcagaa
     1441 gagcgtacga cgcgatgacg ccgcgatccg ttcgaagcaa gccaatgagc aggcgcggat
     1501 cgtcgagcag gacatcgacg ccatcgtgag cgagccgtct ctcgccttct tcgagatcgg
     1561 cgatacgacc agaagcgatt acgtgaagcg cgagctgagc gtcgtcccgc gtgagtgaag
     1621 cgcggacatt gggtttaacc attgcgcgta ccctccggct gaggcctgtg ggtaggagta
     1681 tcggcagttg agtttcactt aggtgctatc cgcacgaatt tcgcgaacgt attatctctt
     1741 ctacacgcta ctgcccgcag tagtttcgcg tcaccaaacg aaggagatcg catgcgttgc
     1801 tgggcgtttg tggttttcgt cgcgtgcact tgcatcacca gcgtggcagc gcaggacgca
     1861 ccgaaggata gcgcagctgc tgtctctccc gttcagcaga acgcgtggat ctcggccggt
     1921 atcggcggtg gcggagcggg cggcaatggt gtcgcggggg ttgtaagtgg ttggtacgcg
     1981 catggcccgt acgtcgtagg tgcccgcgcg tccgaaggcg gtccgctgtt tggcggacgg
     2041 caagtacgcg agaaggccgc gttggtcgga tggcgcgctc gttccgcaca tacgttcgcg
     2101 ctggtcggtg ttggcggcgg taccatgaac gggtggcgat ccaacggaga gcagtcagga
     2161 acgcgaacca cgtacggcga cgagccatcc atcgcgttcg ccgcagaagc aggagtcacg
     2221 tattacgcaa tcgggatcgg gctcgacgta ttcggcgctt ccaaccatcg aacgtcgtac
     2281 gcgggaatcg cgctctcggt tcagcttggg tatttgaagt aggacacgct gttggaattt
     2341 cgatgccgcg cctccgtgaa cgccccaccc gatcagccgg aacggcctta tcctatgcct
     2401 ctaactcgcg gtcgaaggtg gtcgagttta tgtttacagc aaagatgtcc tattctgctg
     2461 tatctgccat accgaccatg accacaacca aacgggcacg caagacattg gacatagatc
     2521 ctgccctcct ggaagacgtt cgcatccggc tcggcgtccg caccgagcgc gaagcggtaa
     2581 cgcgctcgct cgagcagatg cagcgccagc tgcgcatggc g
//
LOCUS       DATIMD010000101         5923 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3216677, whole genome shotgun sequence.
ACCESSION   DATIMD010000101 DATIMD010000000
VERSION     DATIMD010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5923
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3216677"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..279
                     /locus_tag="VLI40_02260"
     CDS             <1..279
                     /locus_tag="VLI40_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HSU96018.1"
                     /translation="LCPTVCPANCIKLVPGEDEEGNRYPLVFEIDEFRCIFCGYCQEV
                     CPEDAIHVGQHYENSEYSREGHVYDLERLMAQTHPVSTLWDSTDPKGE"
     gene            282..833
                     /locus_tag="VLI40_02265"
     CDS             282..833
                     /locus_tag="VLI40_02265"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HSU96019.1"
                     /translation="MDNFGLFYQFHFYLFGIIAIVAAVTFVTRRSPVAAAMWLIVTMF
                     CLAAEYVMLDAQFIAAMQVLLYAGAIMVIFLFVIMLLNLGEASDITDVRGIWGKLLAG
                     FVGLILVAEVGVLTRTGIPSGKYVVGRDFLGQQLAKYGAVGAVARPLYRDYSLAFELT
                     SVLLLVAIAGAVILGRKESTSAR"
     gene            823..1116
                     /gene="nuoK"
                     /locus_tag="VLI40_02270"
     CDS             823..1116
                     /gene="nuoK"
                     /locus_tag="VLI40_02270"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HSU96020.1"
                     /translation="MLAESLGLSAVLFVIGVVGVLTRRNAIIIFMCVELMLNAVNLTF
                     VALSRYYGMGGQVFVLFVMTVAAAEAAVGLAIIISIFRHRQTVDLRNINVMKG"
     gene            1131..3308
                     /gene="nuoL"
                     /locus_tag="VLI40_02275"
     CDS             1131..3308
                     /gene="nuoL"
                     /locus_tag="VLI40_02275"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005141.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HSU96021.1"
                     /translation="MALSSSHPLAGTIAAWMWLLPLLPLLGFFINGALSILGSSHIGP
                     SDPDMGHDGHDTSTTAPQELPHAHGDDSHAQVVPKFRGLTAIVGPGVLVLSFLLAAAI
                     FFAMRGADMSSPFIQRYWSWMPVGDLKIDFAFQLDQLSMVMVLIITGVGALIHIFSVG
                     YMSDDPGFARFFAYLNLFVFFMLMLVLGANYPILFVGWEGVGLCSYLLIGFWFSDKAN
                     ADAGLKAFIVNRIGDVGVLIAMFLIFANLGTLDFTGVAAAAAGLPFGGALVTTICLFL
                     FLGCTGKSAQLPLYVWLPDAMAGPTPVSALIHAATMVTAGVYLIVRSAFLFSMSPIAS
                     ITVAVVGAITALFAATIAMKQWDIKKVLAYSTISQLGYMFVGVGVGAYTAGIFHLATH
                     AFFKALLFLGAGSVIHVMHAAYHHSGSHDDAQDMRNMGGMRRAMPITWIVMWIATLAI
                     SGIPPFAGFFSKDSILGSVYEHAGDSVLTNATWLGMSGHTVLLAVYVIGLAAAFLTAV
                     YMTRLMLYTFHGPSRATEDEQRHMHEAPWLMTGPLVVLGALSLVGGWLNLPAIMSFLG
                     PVGGLDRWLNPVVGGATRSMTNGVALEASHSTEAALIGIAIVIAVLGIAVAVVALKPA
                     SLVPKAQSPAEHGFEKVLANKYYVDEAYDDVVVRPTIGLSKNVFWRGLDAGIIDNLFV
                     NGSAALARGLGWVGARIQTGSTGVYAWAIVVGAIVVLSAFSFR"
     gene            3318..4907
                     /locus_tag="VLI40_02280"
     CDS             3318..4907
                     /locus_tag="VLI40_02280"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HSU96022.1"
                     /translation="MTDFLNGIHYNAWILPALLIIPLVGALLVWAQGGAHREDADANA
                     EPARQIAVWTLIIEFIVSCGLWWSFVPGVAGWQAGVDYAWIPAWGARFSLGVDGISLM
                     LVLLTTLTMPLAVLGGWTAIKARVHAYLAFLLILTSGMLGVFLARDLFLFYVMWEVML
                     IPMYFIIGIWGGQRRVYASLKFFIYTMVGSLLMLVAIIYLGIHNRDALTGIPNFSYDA
                     MLASGALTPTTALWLFGAFFLAFAIKVPVFPFHTWLPDAHTEAPTAGSVILAGIMLKM
                     GTFGFLRFALPLFPGSAMNPTVRAIILTLAVIGIIYGALVAMVQPDFKKLVAYSSVSH
                     LGFVMLGIFALTVQSVQGALLVMINHGISTGALFLLIGMMYERRHTRMLADYGGIARV
                     VPMFAAALTLVSFSSIGLPGLNGFVGEFLVLLGSFRTYPIFAAIATTGVIFAACYLLW
                     AIQKLLFGKLDKPANEHMPDLNWREIGLLIPLFVCIIWLGVYPAPVLRRMEASAEQVV
                     RTVQTNAALSVPQTASLPGGE"
     gene            4911..>5923
                     /locus_tag="VLI40_02285"
     CDS             4911..>5923
                     /locus_tag="VLI40_02285"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HSU96023.1"
                     /translation="MAFDLSQSMQLIAALVPDIIVMVGAMALMLVSAWGSESIERQRR
                     VGKAAIGVCILSAIFVVYFMWAHATATVGVIAVDNFRWIVDLVLLAATAGTIALGLDY
                     NTREGILPAESHVLVLFATSGMMILAAARDLTIVFLGIELMSIAVYILTGMNRRSEKS
                     AEGAIKYFLLGAFSTGFLLYGIALVYGATGTTSLTLIGERVAANQIMSAPMLLIGIGL
                     MLIGFGFKVALAPFHMWAPDVYEGAPTPITAYMAAAVKAAAFAAFLRVFLEAFGGEIP
                     TWHIAVWWLAAITMVVGNLIALASKDIKRLLAYSSIAHAGYILVVLASGQALGSSAFL
                     FYIV"
BASE COUNT          974 a         1828 c         1786 g         1335 t
ORIGIN      
        1 ctctgcccga cggtgtgccc ggcgaactgc atcaagctcg tgccgggcga ggacgaggag
       61 ggaaaccggt acccgctcgt gttcgagatc gacgagtttc gttgcatctt ctgcggctac
      121 tgccaggaag tctgccccga agacgcgatc cacgtcggcc agcactatga gaattcggag
      181 tacagcagag aagggcacgt gtacgatctc gagcggttga tggcacagac gcaccctgtt
      241 tccacgctgt gggattccac tgaccccaag ggtgagtgag catggataac ttcggcctgt
      301 tctatcagtt tcacttctat ctgttcggga taatcgcgat tgtggctgcg gtcacgttcg
      361 tgacgcggcg cagccccgtt gcagctgcaa tgtggctcat cgtcacgatg ttctgcctgg
      421 ccgcggaata cgtcatgctc gacgcgcagt tcattgcggc gatgcaggtg ttgctgtacg
      481 ccggcgcgat aatggtgatc ttcctcttcg tgataatgct gctcaatctg ggcgaggctt
      541 ccgacatcac cgacgttcgc ggaatctggg gcaagctgct cgccggattc gtcgggctga
      601 ttctggtggc cgaggtcgga gtacttacgc gcaccggcat cccgtccggg aagtatgtcg
      661 tcggacgcga tttcctggga cagcagcttg cgaagtatgg cgccgttggt gctgtcgcgc
      721 ggccgctgta tcgcgattac tcgcttgcct tcgagctgac cagcgtcctg ctgctcgtcg
      781 cgatcgccgg cgctgtgata ctcggacgca aggagtcgac gagtgctcgc tgagtcactg
      841 ggtctttccg cggtcctgtt cgtgatcggc gtggtcggcg tgctgacgcg ccggaacgcg
      901 atcatcatat tcatgtgtgt cgagctgatg ctcaatgccg tgaacctcac cttcgtcgcg
      961 ctgtcccgtt actacggaat gggcggccag gtattcgtcc tcttcgtgat gaccgtagct
     1021 gccgcggaag ccgcggttgg cctcgccatc atcatatcga tcttccgtca cagacagacg
     1081 gtcgaccttc gtaacatcaa cgtgatgaaa gggtgataca agcgcaaagt atggctctat
     1141 cgagcagtca cccgcttgcc ggaaccatcg cggcgtggat gtggctgctg ccgcttcttc
     1201 cgctgcttgg tttcttcatc aacggcgccc tcagcattct ggggagctcg cacatcggcc
     1261 cgtccgatcc ggacatgggc cacgacggcc atgacacatc aacgaccgcg ccacaggagc
     1321 tgcctcacgc gcacggcgac gattcacatg cgcaagtagt tccgaaattc cgcggcctca
     1381 cggcgatcgt cggaccgggc gtgctcgtgc tgtcgttcct gctcgccgcg gcgatcttct
     1441 tcgcgatgcg cggcgccgac atgtcgtcgc cgttcattca gcgttactgg agctggatgc
     1501 cggtcggcga tctcaagatc gactttgcat tccagctgga tcagctttcg atggtgatgg
     1561 tgctcatcat caccggagtc ggcgcactga tccacatctt cagcgtcggc tacatgagcg
     1621 acgatccggg tttcgcgcga ttcttcgcgt acctgaatct gttcgtcttc ttcatgctga
     1681 tgctcgtgct cggcgccaac tatccgattc tgttcgtcgg ttgggagggt gtcggactct
     1741 gctcctatct gctgatcggc ttctggtttt cggacaaggc caatgcagat gcgggtctca
     1801 aggctttcat cgtcaaccgc attggcgacg tcggcgtgct gatcgcgatg tttctcatct
     1861 tcgccaatct cggtacactc gactttacag gtgtcgccgc cgcggccgcg ggactgcctt
     1921 ttggcggcgc gctcgtcacg acgatctgtc tcttcctgtt cctcggctgc accggcaaga
     1981 gcgctcagtt gcctctctac gtgtggctac cggacgccat ggcaggcccg acaccagtct
     2041 ccgcgctcat ccacgcggcg acgatggtca cagcgggtgt ctatctcata gttcgcagcg
     2101 cgttcctgtt ctcgatgtct ccgatcgcat ccatcacggt tgccgtggtt ggcgcgatca
     2161 cagcgctctt cgcggcgacg atcgcgatga agcagtggga catcaagaag gtcctggcgt
     2221 attcgaccat ctcgcagctc ggttacatgt tcgtcggcgt gggcgtcggc gcgtacaccg
     2281 caggcatctt tcacctcgcg acgcacgcct tcttcaaggc actgctgttc ctcggcgccg
     2341 gctcggtgat ccacgtgatg cacgccgcct atcatcacag cggcagccac gacgatgcgc
     2401 aggacatgcg aaacatgggc ggcatgcgca gggcgatgcc gatcacatgg attgtaatgt
     2461 ggattgcgac gctggcgatt tccggaattc cgccgttcgc cggcttcttc tcaaaggatt
     2521 cgattctcgg atcggtctat gagcacgctg gcgactccgt actgacaaac gccacctggc
     2581 tcggcatgtc gggccacacg gtgttgctcg ccgtttacgt aatcggactg gcggccgctt
     2641 tcctcacagc agtgtacatg acgcgtctca tgctctacac gttccacgga ccgagccggg
     2701 ccacggagga cgagcagaga cacatgcacg aagcaccgtg gctcatgact ggcccgctgg
     2761 ttgtgctcgg agcgctcagc ctcgttggcg gctggttgaa ccttccggca atcatgtcgt
     2821 tcctcggacc tgtcggcggg ctggatcgct ggctcaatcc ggtggtcggc ggtgcgacgc
     2881 gcagcatgac gaacggagta gcgctcgaag cgtcgcacag taccgaagcc gctctgatcg
     2941 gaatcgcgat cgtcatcgcg gtgctcggaa tcgcggtcgc ggtagtcgcg ctcaagccgg
     3001 cctcgctggt acccaaggcg caatcgcccg ccgagcacgg attcgagaaa gttcttgcca
     3061 acaagtacta cgtcgacgaa gcgtacgacg acgtcgtcgt gcggcccacg atcgggctgt
     3121 cgaagaacgt gttctggcgc ggcctcgatg caggcatcat cgacaatctg tttgtaaatg
     3181 gatctgcggc actcgcgcgc gggctcggct gggtcggtgc gcgcatacag acgggaagca
     3241 ccggcgtgta cgcgtgggcc atcgtcgtcg gagccatcgt tgtcctcagt gccttctcct
     3301 tcaggtaaga cgagcgaatg acagacttcc tcaacggcat ccactacaac gcgtggatcc
     3361 ttccggccct gctgatcatt ccgctcgtcg gtgcgctgct cgtgtgggcg cagggcggtg
     3421 cgcaccgcga agacgctgac gcgaatgcgg agcctgcaag acagatagca gtctggacgc
     3481 tcattatcga gttcatcgtc tcctgcggac tctggtggtc gttcgttccc ggtgtcgccg
     3541 gttggcaggc tggtgtggac tacgcctgga ttccggcgtg gggcgcgcgc ttctcgctcg
     3601 gcgtggacgg catatcgctg atgctcgtgc tgctcacgac gctcacgatg ccgctcgcgg
     3661 tgctcggtgg atggaccgcg atcaaggccc gcgttcatgc gtacctcgcc ttcctcctca
     3721 tcctcacctc agggatgctc ggcgtgtttc tcgcgcgcga tctcttcctg ttctacgtga
     3781 tgtgggaagt gatgctcata ccgatgtatt tcatcatcgg tatctggggc ggccagcgac
     3841 gggtttacgc cagtctcaag ttcttcatct atacgatggt cggatcgctg ctcatgctcg
     3901 tggcgatcat ctatctgggc attcacaacc gcgacgcgct gacgggaatc ccgaacttca
     3961 gctacgacgc gatgctggcg tccggcgcgc ttacacctac gaccgcgctg tggctctttg
     4021 gcgcattctt cctcgccttc gcgatcaagg tgccggtgtt cccgttccat acctggctcc
     4081 ccgatgcgca cacggaagcg ccgaccgcgg gctctgtgat ccttgccggc atcatgctca
     4141 agatgggaac gttcggcttc ctgcgcttcg cgctgccact gttcccgggc tcggcgatga
     4201 atccaaccgt ccgcgcgatc atactgacgc tcgcggtgat cggaatcatc tacggtgcgc
     4261 tggtcgcgat ggtgcagccg gacttcaaga aactcgtcgc gtactcgtca gtcagccacc
     4321 tcggcttcgt catgctcggc atctttgcgc tcaccgtgca gagcgtgcag ggtgcgctgc
     4381 tcgtgatgat caaccacgga atctcgaccg gcgctctgtt cctcctgatc ggaatgatgt
     4441 acgagcggcg ccacacgcgc atgcttgccg actatggcgg aatcgcgaga gtggtgccga
     4501 tgttcgcggc cgcgctcacg ctggtgtcgt tcagcagcat cgggttgccc gggctcaacg
     4561 gcttcgtcgg cgagtttctg gtattgctcg gctcgttccg cacatacccc atcttcgcgg
     4621 ccatcgcgac gaccggcgtg atcttcgccg cctgctatct cctgtgggca atccagaaac
     4681 tgctctttgg caagctcgac aagcctgcga acgagcacat gcccgacctc aactggcgtg
     4741 agatcggact gctcattccg ctgttcgtct gcatcatctg gctcggtgtg tatccggcac
     4801 cggtgctgcg acgcatggaa gcatcggccg agcaggttgt tcgtacagta cagacaaatg
     4861 cggcactctc cgtgccgcag acagcatccc ttccgggcgg agaatagcaa gtggcgttcg
     4921 atctttcgca gtcgatgcag ctgatcgcag cgctcgtccc cgacatcatc gtgatggtcg
     4981 gtgctatggc tctgatgctc gtttccgcgt ggggcagtga atcgatcgag cggcaacggc
     5041 gagtcggcaa agccgccatc ggcgtgtgca ttctgtccgc gattttcgtc gtgtacttca
     5101 tgtgggcgca tgcgactgcg actgtcggcg taatagcagt cgacaacttc cgctggatcg
     5161 tcgatctcgt tctgctcgcg gccacggccg gcaccatcgc gctcgggctc gattacaaca
     5221 cacgcgaggg aatcctcccc gcggaatcgc atgttctggt gctcttcgcg acctcgggca
     5281 tgatgattct ggccgcggca cgcgatctca cgatcgtctt cctcggcatc gagctgatgt
     5341 cgatcgctgt ttacatcctc accggcatga atcgtcgcag cgagaagtca gccgagggcg
     5401 ccatcaagta cttcctgctt ggcgcgttct cgaccggatt cctgctgtac gggatcgcgc
     5461 tggtgtacgg cgcaacaggc actacgagcc tcacgttgat cggagagcgc gtcgccgcca
     5521 accagatcat gtccgcaccg atgctgctca tcggtatcgg tctcatgctg atcggctttg
     5581 gcttcaaggt cgcgcttgcg ccgttccaca tgtgggcgcc tgacgtgtac gagggcgcgc
     5641 cgactccgat taccgcttac atggcagcag cagtcaaggc ggctgcgttt gccgcgttcc
     5701 tgcgcgtatt cctcgaagcg ttcggcggcg agattccaac ctggcacatt gccgtatggt
     5761 ggctcgcggc aatcacgatg gtcgtcggca atctcatcgc gctcgcatcg aaggacatca
     5821 agcgcctgct ggcctactcg agcatcgcgc acgcaggcta catcctggtc gtgcttgcat
     5881 cagggcaggc gctcggaagt tcggcgttcc tcttctatat tgt
//
LOCUS       DATIMD010000102         5711 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2349225, whole genome shotgun sequence.
ACCESSION   DATIMD010000102 DATIMD010000000
VERSION     DATIMD010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5711
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2349225"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..2867)
                     /locus_tag="VLI40_02290"
     CDS             complement(144..2867)
                     /locus_tag="VLI40_02290"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HSU96024.1"
                     /translation="MQRVLIVDDEPNIRRMVGALLSAEGYEVREAADGAAGVRAVEEE
                     EPDVALIDLMMPGGMDGIATLAKIRERWSELPVIMMSGRASLSDAVRATKVGAVNFLE
                     KPLAPETVLLALGSALELRQARRAARVLRAELGRTGEMVGSSSAMVRVRELTARVASS
                     DARVLISGESGTGKELVAAAIHEHGPRRDRPFVRVNCAAIPRDLVESEMFGHEKGSFT
                     GAAERRIGKFELADTGTLFLDEIGDLTMEAQAKLLRAIEAKEIQRVGGNKTIKVDVRI
                     IAATNHDLAKAVDDGEFREDLYFRLNVIPIHLPPLRERGNDVIELLHHFSEIQHQRTG
                     RPTLTWSAEAEARMRAYAWPGNVRELANIVERLAILSNDSRITIGDVAAVLPVPRDTS
                     AATSVAADDRGLTDTLDDMERRMIADALAWASGNVAEAARRLQTDRANLYRRMKRLGM
                     AATMVVLCAISVLTALSTSPGVLSAQAVPAQKDTTASDTTTVYEYPNTDDRPYVHLEP
                     SLSSGKTYNRVEGLSILLGPALTVETPKFALDGTAYFIGRTARGLSTAEPDGGHDVRI
                     RTRFGPEKSLGLEGRLYSVVSPIEGWQLTEPEEGLGSFLLRRDYHDYYGRHGGQINAS
                     WTFSRKAAFSAGYALERWSSVDERNPFTLFRENGRWRPNPAVDEGVFHLLTFSGTFDT
                     RNDEREPSGGWYLTGTFEHGSSASAVLAPQVQNPVPSGISSAPQAISYGRVFFDLRRY
                     NRVSPRTQLDGRIVAGGWVSGDELPLERKLSVTGPGVLPGYEFREMQDGPDVMQCTAR
                     GVAPSDNPVMCDRIVLGQAELRTQLAPHPFDIFNIPALRLRSVGFTASPVGVLFVDVG
                     RGWRTTTPWPSAYKADVGAGLDLGLIGAYVAKAVTDGGEPLRFFLRIRRRF"
     gene            complement(2874..3227)
                     /locus_tag="VLI40_02295"
     CDS             complement(2874..3227)
                     /locus_tag="VLI40_02295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96025.1"
                     /translation="MGPEIIVPVSGMVMIIAIVLGIPLVRSYTKRVESRPSRDALPAG
                     EMFTRLDRIEQSIEAMATEVERIAEGQRFTTKLLSEVRTSAPAALAAPVPAQAPAAPP
                     MQPDGTVLSEAARRS"
     gene            complement(3229..3525)
                     /locus_tag="VLI40_02300"
     CDS             complement(3229..3525)
                     /locus_tag="VLI40_02300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96026.1"
                     /translation="MMDKDVAGALIGGICFVSVTTVLPLCIMFLRRGNRTREQQMQLP
                     VADIVARLERMEMGMESMSAEIERIGEGQRFATRLLNERDSRRLENVDAATRRV"
     gene            complement(3522..4745)
                     /locus_tag="VLI40_02305"
     CDS             complement(3522..4745)
                     /locus_tag="VLI40_02305"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSU96027.1"
                     /translation="MPPKQLHYRTRLFLILSLFALVPAALLTVLWGVTLGSALPIVTG
                     RAGWDSVAATGRRAIAAAETAPLNRKQRAAFSEHERELGASLEQAERFNYLVRRGAEV
                     VVVSSIIVLAAIGFGASRVAGHLSRQLSRPIDELVDWTELIRRGEQLPSAPRKRGAPE
                     FEILRQRLKMAAVALDLGRQRAIEAERLRAFRESARQVAHELKNPLTPIRFAIDRLRR
                     GAPPELAETVEVLAIETERLERTARSFAQFGRLPEGAQSQIDIGELVRYAATTTVPPT
                     MTLDLTVAEGLPMILGYHDALAGAVSNVLLNAVDACEGKGKLTVRVSESSLQGKQAVK
                     IQIEDNGPGIGAQQLKRIWEPYVTNKAGGTGLGLAIARQAVWAHDGSVSAYSDVGTGT
                     RIEFTLPIDALVAEA"
     gene            4933..>5711
                     /locus_tag="VLI40_02310"
     CDS             4933..>5711
                     /locus_tag="VLI40_02310"
                     /inference="COORDINATES: protein motif:HMM:NF014045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HSU96028.1"
                     /translation="MHRGPQAATLSASGGAFHAPNAALLIDFDNVTMGIRSDLNAELR
                     SLLSSDIVKGKVSVQRAYADWRRYPQYIVPLSESSIDLIFAPAYGSSKKNATDIRLAI
                     DALELVFTRPEIGTFILLSGDSDFSSLVIKLKEYGKYVIGVGIRESSSDLLVQNCDEY
                     YSYNALAGLVNTREEEVAKWDPYQLAGEAVQRMKRNGDVMRADRLKQVMQQIDSSFDE
                     KNLGMSKFTRFVQEAAHRGVLASHKMDNGQLEVDLAKAGAAT"
BASE COUNT         1042 a         1910 c         1694 g         1065 t
ORIGIN      
        1 tacgccgatc gtgcgcaccg cgggcggttg cgtcgcgaga tcgggtcgcg ccggaagtac
       61 gatgtcgacg tgcgccgatt gcgctgcgct cacgccgcca gagacgcata tcgcgagcat
      121 catgatcgcg agccagcgca ccgtcagaac ctgcgtcgta tgcgtaggaa gaagcgcagc
      181 ggctcgccac cgtccgtcac tgccttcgcg acatacgcgc cgatgagtcc aagatcgagt
      241 ccggcgccca cgtcggcctt gtatgcggat ggccacggcg tggtggtgcg ccagccgcgt
      301 cccacgtcga cgaagagtac gcccacggga ctcgcggtaa aaccgacgct gcgcaggcgc
      361 aatgccggta tgttgaagat gtcgaacgga tgcggagcga gctgtgtccg cagctctgcc
      421 tgaccgagta cgatgcgatc gcacatcacg ggattgtcag acggagccac gccgcgcgcg
      481 gtgcactgca tcacgtccgg cccatcctgc atctcgcgga attcgtagcc gggcaggact
      541 cccggacccg tcactgaaag ttttcgctcg agcggcagct cgtcgccact cacccatcct
      601 ccggcaacga ttcgaccgtc cagctgcgtg cgtggagaaa ctctgttgta acgtcgcaga
      661 tcgaagaaca ctcgcccgta cgaaatggct tgcggtgccg acgaaatccc ggacggaacc
      721 ggattctgaa cctgcggcgc gagtacggcc gacgcactgg agccatgctc gaacgtgccg
      781 gtgagatacc acccgccgct cggctcccgc tcgtcgttgc gggtgtcgaa cgtgccgctg
      841 aacgtcagaa gatgaaatac tccttcgtcg accgccggat tggggcgcca gcggccgttc
      901 tcgcggaaca gcgtgaacgg attccgctcg tcgacggacg accaccgttc gagtgcataa
      961 ccagcggaga atgccgcctt tcggctgaat gtccacgaag cgttgatctg gccgccgtgg
     1021 cggccgtaat aatcgtggta atcgcggcga aggagaaacg atccgagccc ttcctcgggc
     1081 tcggtcagct gccagccttc gatcggcgag acgacgctgt acagacggcc ctcgaggcca
     1141 agcgactttt ccgggccgaa gcgcgtccgt atccgaacgt catggcctcc gtccggctcg
     1201 gcagtactca agccgcgtgc ggttcgcccg atgaaatacg ccgttccgtc cagcgcgaat
     1261 ttcggagttt ccaccgtaag tgcaggaccc agcagaatcg aaagtccttc cacccgattg
     1321 taagtcttgc ctgacgacag gctcggctcg agatgcacat atggccggtc gtcggtgttc
     1381 gggtactcgt agacggtcgt agtgtcgctc gctgtcgtat ccttctgcgc gggcacggcc
     1441 tgcgcggaga gcactcccgg cgaagtcgac agcgcagtca gaaccgaaat tgcgcagagc
     1501 acaaccatgg tggccgccat gccaagccgc ttcatgcgcc ggtacagatt tgcacgatcg
     1561 gtttgcagcc ggcgcgcggc ttcggccacg tttccggacg cccacgccag cgcgtcggcg
     1621 atcattcggc gctccatgtc gtccagcgtg tcagtgagac cccggtcatc cgctgcgacg
     1681 ctggtcgccg cagacgtgtc gcgcggaacg gggagcaccg ccgctacgtc tccgatggtg
     1741 atgcgcgagt cgttgctgag aatggcgaga cgctcgacga tgttcgcgag ctctcgcacg
     1801 tttcccggcc acgcatacgc acgcatgcgc gcctcggcct cggccgacca cgtcagcgtt
     1861 gggcggccgg tgcgttgatg ctgaatctcg gaaaaatgat gcagcagctc gatcacatcg
     1921 ttgccccgct cgcgcagcgg cggcagatgg atcgggatga cgttcagtcg aaagtagaga
     1981 tcctcgcgga actcgccgtc gtccacagcc tttgcaagat cgtggttggt agccgcgatg
     2041 atgcgtacgt cgaccttgat ggtcttgtta ccgccaacgc gctggatttc ctttgcctct
     2101 atggcgcgca ggagcttggc ctgcgcctcc attgtcagat cgccgatctc atcgagaaac
     2161 agcgtacccg tgtcggccag ctcgaacttg ccgatgcggc gctccgccgc gccggtgaat
     2221 gagcccttct cgtggccgaa catctcgctc tccacgaggt cgcgcggaat tgcagcgcag
     2281 ttcacgcgta cgaaaggacg atcgcgtcgc ggtccgtgct cgtgaattgc cgctgcgacg
     2341 agctcctttc cggttcccga ctcgccgctg atcagaacgc gcgcatcgct ggacgcgacg
     2401 cgtgccgtga gttcgcgaac ccgcaccatc gcgctgctcg atccgaccat ctcgcccgtg
     2461 cggccgagct ctgcgcggag cacgcgcgcc gcgcggcgag cctgcctcag ctcgagcgcg
     2521 gagccgagtg caaggagaac cgtctccggt gcgagcggct tttcgaggaa gttcaccgcg
     2581 cccactttgg ttgcgcgcac cgcatcgctc aacgacgcgc gcccgctcat catgatcact
     2641 ggaagttcgg accagcgctc gcgaatcttt gcaagcgtgg cgatcccgtc cattccgccc
     2701 ggcatcatca ggtcgatcag cgcgacgtcc ggctcttctt cctcgaccgc tcttacaccg
     2761 gcggcgccat ccgcagcctc gcgtacctca tagccttcag cggagagaag cgcgccgacc
     2821 atccggcgaa tgttcggctc gtcgtcaacg atcagtacgc gctgcacgct gcgtcaggac
     2881 cgtcgcgcag cttcggacag aacggttcca tccggctgca tcggcggcgc ggctggtgcc
     2941 tgggccggta ccggcgcagc gagcgcggcc ggtgcacttg tgcggacttc ggaaagcagc
     3001 tttgtcgtga agcgctgccc ttctgcgatg cgctcgactt cggtcgccat cgcttcgatg
     3061 gactgctcga ttctgtcgag gcgcgtgaac atctcacccg ctggaagcgc atcgcgcgac
     3121 ggtcgcgact ctactctctt cgtgtagctc cgcacgaggg ggattcccaa cacgatggcg
     3181 attatcatca ccattccgct gaccggtact attatctctg gtcccatatc aaactctccg
     3241 tgttgcagcg tccacgtttt cgagcctgcg tgagtcgcgc tcgttcaata atctggtcgc
     3301 gaagcgctgt ccctcgccaa tccgctcgat ctcggcggac atcgattcca ttcccatctc
     3361 catcctctcc agtcgcgcca cgatgtcggc gaccggtaat tgcatctgct gttctcttgt
     3421 ccggttgcca cggcgcagga acatgatgca caacggcaga acggtcgtca ccgatacgaa
     3481 gcatatgccc ccaatgagcg ctccagccac atccttgtcc atcacgcctc cgccaccagg
     3541 gcgtcaatcg gtagagtgaa ctcgatccgg gtgcccgttc caacatcgct gtacgcagac
     3601 accgatccat cgtgcgccca tacggcctgg cgcgcgatcg cgagcccgag cccggtacca
     3661 cctgctttat tagtcacata cggctcccag atgcgtttca attgctgcgc gccgattcca
     3721 gggccattgt cctctatttg aatcttcacg gcctgcttgc cctgcagaga cgattcggac
     3781 acccgaacgg tcagcttgcc cttgccctca catgcatcga cggcattgag cagcacgttg
     3841 gataccgcac cagcgagcgc gtcgtgatac cccagtatca tcggaagtcc ctcggcaacc
     3901 gtgagatcca gcgtcatggt tggaggaacc gttgtcgtcg ctgcgtagcg taccagctcg
     3961 ccaatgtcta tctgcgactg tgccccttca ggcagccgcc cgaactgcgc gaagctgcga
     4021 gcagtgcgtt cgagtcgctc cgtttcgatc gcgagaactt ccaccgtctc cgcgagctcc
     4081 ggtggcgcac cacggcgcag acgatcgatc gcaaagcgaa tcggagtgag cggattcttg
     4141 agctcgtgcg caacctgacg cgcgctctcg cgaaatgcgc gcagccgctc agcttcgatc
     4201 gcgcgctggc gccccagatc gagcgctacc gccgccattt tgagtctctg gcgaagtatc
     4261 tcgaactcgg gagcgccgcg ctttcgcggc gcagatggca gctgctcgcc gcgccttatg
     4321 agctcggtcc agtcgaccag ctcgtcgatc ggcctgctca actgtctgct gagatgtccc
     4381 gcgacgcgcg aagcaccgaa tccgatcgcc gcgagaacga tgatcgatga cacgacgacg
     4441 acctccgcac cgcgccgaac gagataattg aagcgctccg cctgctccag cgaggcaccc
     4501 aattcgcgct cgtgctcgct gaatgctgcc cgttgtttcc ggttgagtgg tgcggtttcg
     4561 gccgccgcga tcgcgcgccg gcctgtcgct gcgacactgt cccagcccgc tcgcccggtc
     4621 actatcggga gcgcgcttcc gagcgtgacg ccccacaaaa ccgtcagcaa ggccgccggc
     4681 accagcgcga aaagtgacag gatcaggaac agtcgcgtac ggtagtgcag ttgcttcggg
     4741 ggcatgtcct ggtaaattac aagggatcac gcgacttcga ggatccgctg ccaacgccac
     4801 agcctcggca aaagctccgg ctaaagctcc ggcaccggca cctgaagtcg cgcgcagtga
     4861 aaactcaaaa ccgaacgtat gccacctcgt cacatccggc ccccggtcgc agctcgcggc
     4921 ccggtagcgc cggtgcatcg cggcccacag gccgccacgc tctccgcttc cggaggcgcc
     4981 ttccacgctc caaacgccgc tctcctcatc gatttcgaca acgtcacgat gggaatccgc
     5041 tcggatctga acgccgagct gcgtagcctc ctctcatcgg acatcgtcaa gggaaaggta
     5101 tcggtccagc gtgcctacgc cgactggcga cgatacccgc agtacatcgt cccgctgtcc
     5161 gagtcctcga tcgatctgat cttcgcgccg gcctacggct cttccaagaa gaacgccact
     5221 gacatcagac ttgcgatcga cgcgctcgag ctcgtgttca cgcgtcccga gatcggcacg
     5281 ttcattctcc tgagcggcga cagcgacttc tcgagtctcg tcatcaagct caaggagtac
     5341 ggcaagtacg tcatcggtgt cggcattcgc gaatcatcca gcgatctcct cgttcagaat
     5401 tgcgacgagt actacagcta taacgcgctc gccggtctgg tgaacactcg cgaggaagaa
     5461 gttgcgaagt gggatccgta ccagctcgcc ggcgaagctg tgcagcgcat gaagcgcaac
     5521 ggcgacgtca tgcgcgccga tcgcctcaag caggtgatgc agcagatcga cagctcgttc
     5581 gacgagaaga acctcggcat gtccaagttc actcgcttcg tgcaggaagc cgcgcatcgc
     5641 ggggttctcg cctcgcacaa gatggacaac ggccagctcg aagtcgatct ggcgaaagcc
     5701 ggagccgcaa c
//
LOCUS       DATIMD010000103         1822 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4371853, whole genome shotgun sequence.
ACCESSION   DATIMD010000103 DATIMD010000000
VERSION     DATIMD010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4371853"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..588)
                     /locus_tag="VLI40_02315"
     CDS             complement(<1..588)
                     /locus_tag="VLI40_02315"
                     /inference="COORDINATES: protein motif:HMM:NF037749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5602 domain-containing protein"
                     /protein_id="HSU96029.1"
                     /translation="MNTKRFIGTAAAMAIASAGIAIACSNTDGPDSKAGTFYGPSQSF
                     AQGTARAWVQTDAAGDPTALGIAMTEQALNGLPATVSGPSPTALMVTLPLPAQAQGHG
                     FDHAELGWNPLGHEPPQLYGVPHFDLHFYMVSSAEQNAILPSDPQYGAKAANYPSANL
                     IPAGYVPPPGVAASNAVPQMGLHWTDLKAPELNGQG"
     gene            758..>1822
                     /locus_tag="VLI40_02320"
     CDS             758..>1822
                     /locus_tag="VLI40_02320"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSU96030.1"
                     /translation="MSHERNAEVERLFDELMELGPAARETRVSQLASTPHVSAAIARE
                     VASLVAAADRAGDFLGLLSNTTAAGPIACETGDVIAGRYQLQSRLGQGATGDVYLAWD
                     TQLERSVALKFLRASADDDASGLARFLAEARAAAKLDHRHVATVHDIGEDEHRRAFIA
                     MSYYPGETLRDRIANGALPLTDAVRIAAQIASALDAAHSAGIVHRDVKPANVLFDADG
                     AVKLADFGAAKLVTASVSSNDEITVGTIAYMSPEQARGEPVDNRTDLWALGVVLHEML
                     AGVRPFAAADAETLLLALANGETAAPLPDDVHATLEIRDLLANLLASDPAHRSPSAAA
                     VSRMLGDLVHADEIATATRSS"
BASE COUNT          310 a          575 c          599 g          338 t
ORIGIN      
        1 tccctgaccg ttcagctccg gtgccttgag gtcggtccag tgaaggccca tctgcggcac
       61 tgcattcgac gccgcgacgc cgggaggcgg gacgtaaccc gccggaatca gattcgccga
      121 cggatagttc gccgccttgg ccccgtactg cggatcgctc gggaggatgg cgttctgttc
      181 cgcgctgctc accatgtaga aatgcagatc gaagtgcggt acgccataca gctgcggcgg
      241 ctcatggcca agcggattcc aacccagctc ggcgtgatcg aaaccgtgac cctgtgcctg
      301 cgccggcagt ggcagcgtga ccatcagcgc agtgggactc ggaccggaca cggtcgccgg
      361 cagaccgttg agtgcctgct cggtcatggc gatccccagc gcggtcggat cgccggccgc
      421 gtcggtctgc acccacgcac gcgctgtccc ctgcgcgaag ctctgcgacg gcccgtaaaa
      481 cgtccccgct ttcgagtctg gcccatcggt gttggagcag gcgatcgcga tgcctgctga
      541 tgcaatagcc attgcggcgg cggtgccgat gaatcgtttc gtgttcatgg tctcactcct
      601 gtgtgttcgc cccaagcagg gcatgctgca gcgcgtgttg ctgcctgaca caccaatagc
      661 gagaaccggg aacgggatat ttcacatgat ttgcagataa tttgatgggc cgatctccgg
      721 cgctgtcttg tgaccagttc cagtgctatg attgggcgtg tcgcacgagc ggaatgcaga
      781 ggtcgagcgc ctcttcgatg agctcatgga gctcgggccc gccgcgcgcg agacgcgtgt
      841 gagtcagctc gcgtccacac cgcatgtttc cgccgctata gccagagagg tggcatcgct
      901 ggtcgccgct gcggaccgcg ccggcgactt cctggggctc ctctcgaata cgacagccgc
      961 gggacccatt gcctgcgaaa cgggtgacgt catcgcgggg cggtatcagc ttcagagccg
     1021 tctcggtcag ggtgcgacgg gcgacgtgta cctcgcatgg gacacacagc tcgagcgatc
     1081 ggtcgcgctc aaatttctgc gcgcctccgc agacgacgat gcttccggac tggcgcggtt
     1141 cctggcggag gctcgcgctg cggcaaagct ggaccatcgg cacgtcgcaa cggtgcatga
     1201 catcggtgag gatgaacatc ggcgggcatt catcgcgatg tcgtactatc ccggcgagac
     1261 tctccgcgac cgtattgcga atggtgcgtt gccgctcacc gacgccgttc gcatcgccgc
     1321 acagatcgcg agcgcactcg acgcggcgca ttcggcagga atcgttcatc gggacgtgaa
     1381 gccggccaat gtgttgttcg atgcagacgg cgcagtaaag ctggctgatt tcggtgcggc
     1441 caagctggtg accgcaagcg tgtcctcgaa cgacgagatc acggtcggga ccatcgcgta
     1501 catgtccccg gaacaggcgc gcggagagcc ggtcgacaac cgaaccgacc tgtgggcgct
     1561 gggcgtcgta ctgcacgaga tgctcgccgg cgttcgccca tttgcggccg cagatgcgga
     1621 gacgttgttg ctggcgctcg ccaacggcga aaccgcggcg ccgttgccgg acgacgttca
     1681 cgcaacgctg gaaattcgcg acttgctcgc caatctgctg gccagcgatc ccgcgcatcg
     1741 ttccccgagc gccgcagccg taagtcgcat gctcggtgat ctcgtgcatg cggatgagat
     1801 cgcgactgcg acgaggtcgt cg
//
LOCUS       DATIMD010000104         3379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2640920, whole genome shotgun sequence.
ACCESSION   DATIMD010000104 DATIMD010000000
VERSION     DATIMD010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2640920"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..466)
                     /gene="truB"
                     /locus_tag="VLI40_02325"
     CDS             complement(<1..466)
                     /gene="truB"
                     /locus_tag="VLI40_02325"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HSU96031.1"
                     /translation="MNGDEDGVSGLLLVDKPAGITSHDVVDIARRVYGERSIGHLGTL
                     DPFATGLLVLLLGRATRLATFIDNEPKVYDATIRFGEETDTGDPTGDVIRTAPRPSRD
                     AVLAAIPSLTGVIPQVPPEFSAKKVQGAPAYRAARAGASVVLAPSPVTVHEWQ"
     gene            complement(456..821)
                     /gene="rbfA"
                     /locus_tag="VLI40_02330"
     CDS             complement(456..821)
                     /gene="rbfA"
                     /locus_tag="VLI40_02330"
                     /inference="COORDINATES: protein motif:HMM:TIGR00082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HSU96032.1"
                     /translation="MPRDNRRAERVAAAIREEIASYLTSGSRDPRISGMVTVTGVDVT
                     SDLRRARVYVSVMDGDGTDPVAILNQVGHRLRGEIGRALRLRLAPELDFQIDETAAKA
                     SRIESLLAQIKAEDSNRER"
     gene            complement(831..>3379)
                     /gene="infB"
                     /locus_tag="VLI40_02335"
     CDS             complement(831..>3379)
                     /gene="infB"
                     /locus_tag="VLI40_02335"
                     /inference="COORDINATES: protein motif:HMM:TIGR00487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HSU96033.1"
                     /translation="PAPVETPAPVEKVAEAEAAQPARVRRPAPVVPPVAETKPAPAAE
                     AAAKPTPVAPTERPGEPAAAAPRDVVTQPVAAAPQAERPVAPPPIRPERPELQTAHSA
                     PTPATPRPQSARTDRPRPIPLPPLQPRASATPPRPLTPGGPRPRPGSSSNQRQGSGPS
                     NARPAAAAASTAVPGTPSRESRPRPTGDRAPARQDDRSRGRGRGRRVDQEAVSANIFK
                     TMTSMRGSSRKGAPRRDETVSREEVEAQRKAAVEKERKTVRVNEFVTVAELAQQLKVP
                     GNQIVGFAFKNLGLMVSINQRLDFGQIELIAGEFGFQAVLEDEYAADTESLLEKDAAE
                     DLIPRPPVITIMGHVDHGKTSLLDHIRKAHVVAGESGGITQHIGAYHVTLPGDRAITF
                     LDTPGHQAFTAMRARGAQVTDIVVLVVAADDQVMPQTIEAISHAKNAGVPMIVAINKI
                     DLPGANPMKVKQDLLQHGVVLEEFGGTTLASEISAKTGQNVPALLDQLVLQAEILDLK
                     ANPERRAVGSVVEAQLDPGKGPVATVLVQNGTLHVGDDFICGMYSGRVRALLDERGRN
                     QKSAGPAIPVQVLGIGGVPMAGDQFLAVEDATASREIAQRRQRLDREARSRRTMKGSV
                     SLEDFMSQTAPGQARALRIVIKADQGGPAEALADALGQLSTAEVTVEVIHRGVGAITE
                     SDILLARASGAIIVGFHVRPDNNARNAAEREGVEIKLYKIIYEAVEDVKLALEGMLRP
                     EEREVVLGDAQVREVFKVSRIGVIAGCSVRNGIINRTGRVRVIRDGVEMYDGVIGSLR
                     RFKDDVREVREGFECGIGIENFNDIKVGDVIECYTKEQVARTLASSAAAS"
BASE COUNT          555 a         1079 c         1115 g          630 t
ORIGIN      
        1 tttgccattc gtgcactgtg actggagacg gtgcgagcac gacactcgcg ccggcacggg
       61 ccgcgcggta agccggcgcg ccctgcactt tcttcgcgga gaattcgggt gggacctgtg
      121 gtatcactcc ggtgagcgac ggaatcgccg ccagtacagc gtcgcgcgat ggtcgcggtg
      181 cggtacgaat cacgtcgccg gtaggatcgc cggtgtcggt ctcctcgccg aagcggatcg
      241 tcgcgtcgta aaccttgggc tcgttgtcga tgaaggttgc gagacgcgtc gcgcggccga
      301 gcaggagcac gagcagcccc gtggcgaacg gatcgagtgt gccgaggtgg ccgatgctac
      361 gctcgccgta tacgcggcgc gcaatgtcga cgacgtcgtg tgaggtgatg ccagctggtt
      421 tgtcgacgag cagcagaccc gatacaccgt cctcgtcacc gttcacggtt cgagtcttcc
      481 gccttgatct gtgccaggag cgactcgatg cgcgacgcct tcgccgctgt ctcgtcgatc
      541 tggaaatcga gctcgggggc gagtctgagt cggagtgcgc ggcctatctc accgcgcagc
      601 cgatggccca cctgattgag aatggcgacc ggatcggtgc cgtcgccgtc catgacgctg
      661 acgtagacgc gcgcgcgccg gaggtcggat gtgacatcca ctccggtgac ggtgaccatt
      721 ccgctgatgc gggggtcacg cgagccactc gtgaggtagg atgcaatctc ctcacgaatg
      781 gcggcggcta cgcgctcagc tcggcgattg tcgcgaggca ttgcctggcc tcacgatgcc
      841 gccgcgctcg acgcaagcgt gcgcgcgacc tgttccttgg tgtagcactc gatgacgtcg
      901 ccgaccttga tgtcgttgaa gttctcgatg ccgataccgc actcgaagcc ttcgcgcact
      961 tcacgcacgt cgtccttgaa gcgacgcagc gacccgatga cgccgtcgta catctcgacg
     1021 ccgtcgcgaa tgacacgcac gcggcccgtg cggttgatga tgccgttccg cacgctgcaa
     1081 ccagcgatga caccgatgcg agagaccttg aaaacctcgc ggacctgcgc gtcgccgagc
     1141 accacttcgc gctcctcggg gcgaagcatg ccttcgagcg caagcttcac atcctcgact
     1201 gcctcgtaga tgatcttgta caacttgatc tcgacgcctt cgcgctcggc ggcgttgcgt
     1261 gcattgttgt ccggacgcac gtggaagccg acgatgatgg cacccgacgc acgcgcaagc
     1321 agaatgtcgc tctcggtgat cgcgcctacg ccacgatgga tgacctcgac tgtgacttcc
     1381 gccgtcgaca gctggcccag tgcgtcggcg agtgcttccg ccggaccgcc ctggtctgcc
     1441 ttgatgacga tgcgaagtgc gcgcgcctga ccgggcgccg tctgcgacat gaagtcctcg
     1501 agcgagacac ttcccttcat cgtacgacgg ctgcgagcct cgcggtcgag ccgctggcga
     1561 cgctgcgcaa tctcgcgcga cgccgttgca tcctcgactg ccaggaactg atcgccggcc
     1621 attggaacac cgccgatgcc gagcacctga accgggattg ccggaccggc gctcttctga
     1681 ttgcggccgc gctcatcgag cagcgcgcgc acgcggccag agtacatgcc gcagatgaaa
     1741 tcatctccga catgcagcgt gccgttctgc acgagcaccg tcgcgaccgg acccttgccc
     1801 ggatcgagct gtgcttcgac aacggagccg actgcacgac gctcggggtt ggccttgaga
     1861 tccagaattt ccgcctgcag aacgagctga tccagaagcg ccggcacatt ctgaccggtc
     1921 ttcgcggata tctcgctcgc gagcgtggta ccaccgaact cttcgagcac gacaccgtgc
     1981 tgcaggaggt cctgcttgac cttcatcggg tttgcacccg ggaggtcgat cttgttgatc
     2041 gcgacgatca tcggaacgcc ggcgttcttg gcgtgcgaaa tcgcctcgat ggtctggggc
     2101 atcacctgat cgtccgcggc gacaacgagt acgacgatgt cagttacctg agcaccgcgt
     2161 gcgcgcatgg ccgtgaacgc ctggtgacca ggcgtatcga ggaacgtgat cgcacgatcg
     2221 cccgggagcg ttacgtgata tgcaccgatg tgctgcgtga tgccgccaga ttcacccgcg
     2281 acgacgtgcg ccttgcggat gtgatcgagc aacgacgtct taccatggtc gacgtgaccc
     2341 atgatggtga tgaccggcgg acgtggaatg agatcttccg cggcatcctt ctcgagcagc
     2401 gactcggtat cggcggcgta ctcgtcctcg agcacggcct ggaaaccgaa ctcaccagcg
     2461 atcagctcga tctgaccgaa gtcgagtcgc tggttgatcg agaccatgag gccgaggttc
     2521 ttgaaggcga agccaacgat ctggttgccg gggaccttga gctgctgcgc aagctccgcg
     2581 acggtgacga actcgttgac gcgaaccgtt ttcctttcct tctcgacagc ggccttgcgc
     2641 tgcgcctcca cttcctcgcg cgatacagtt tcatcgcggc gcggcgcgcc cttgcgcgag
     2701 cttccgcgca tggacgtcat cgtcttgaag atgttggcgg atacggcttc ctgatctacg
     2761 cgacgaccgc gaccgcgtcc acgtgagcga tcgtcctggc gtgcaggtgc acgatcgcct
     2821 gtaggacgtg gccggctctc gcgcgatggt gtacccggaa cggcggtcga agcggccgct
     2881 gctgccggac gcgcgttcga cggtcccgaa ccctggcgct gattgcttga gctacccgga
     2941 cgcggacgcg gaccacccgg agtcagcgga cgcggtggcg tcgcgctggc gcgtggttga
     3001 agcggtggca gcggtattgg acgcggacga tcggtacgtg cggactgcgg acgtggcgtg
     3061 gctggcgttg gagcagaatg cgcagtctgc aactccggac gctcgggccg gatcggcggc
     3121 ggcgcgacgg gtcgttctgc ctgcggtgcg gcagctacag gctgcgtaac gacatcgcgc
     3181 ggggcagccg ctgctggctc gcctggcctt tctgtcggtg cgaccggtgt cggcttcgca
     3241 gcagcttcgg ccgccggcgc gggcttcgtt tcggcgacag gtggaacgac aggcgcggga
     3301 cgacgaacgc gagccggctg tgccgcctcg gcctctgcaa ccttctcgac tggtgctgga
     3361 gtctcaaccg gagcaggcg
//
LOCUS       DATIMD010000105         4432 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3796326, whole genome shotgun sequence.
ACCESSION   DATIMD010000105 DATIMD010000000
VERSION     DATIMD010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4432
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3796326"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..873
                     /locus_tag="VLI40_02340"
     CDS             <1..873
                     /locus_tag="VLI40_02340"
                     /inference="COORDINATES: protein motif:HMM:NF013665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HSU96034.1"
                     /translation="GGERSVTDGRLHSFIEGIRTRAALSKRRIAFPESGDPRVLAATE
                     RLDALAICDPLLVDQGPDALERAAEMVASGVADGMVAGADTTSRDVLRAAIRKIGLAP
                     GMLTVSSAFYMVAATEWEAASQVLTFTDCAVVPYPTASQLADIAISAASDRRRIVGDE
                     PIIAFLSFSTAGSASGASVDLVRTAVDIVRRRAPSLVVDGELQGDAALVPAVAARKAA
                     DSPCGGRANVLVFPSLDAGNIAYKLVQRLAGAAALGPILQGLARPAADLSRGATVDDI
                     INVTAITALQTENG"
     gene            870..1202
                     /locus_tag="VLI40_02345"
     CDS             870..1202
                     /locus_tag="VLI40_02345"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HSU96035.1"
                     /translation="MSFTLKKNGDVVVVDVEGQLIVGNRQELKQKVLDELEKGDRKFL
                     IDFAQTGYIDSSGLGVLVSLSKKIREHGGELRLANLNDDLQTLFELTKLDTLFQIAET
                     RERALEGF"
     gene            1288..1707
                     /locus_tag="VLI40_02350"
     CDS             1288..1707
                     /locus_tag="VLI40_02350"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU96036.1"
                     /translation="MTPSYVALDVEIPSDVKQIEPIVNLVTEHCKSLRLPRRQCSLNI
                     PVALSEALSNAIIRGNHEDPRKHVRLRATVSDRALVFDVVDEGNGFDMERESHDPTTP
                     EYITREDGRGIFLMHQLMDRVEQFRGPQHVVRLTLNR"
     gene            1704..2990
                     /locus_tag="VLI40_02355"
     CDS             1704..2990
                     /locus_tag="VLI40_02355"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing SpoIIE family protein
                     phosphatase"
                     /protein_id="HSU96037.1"
                     /translation="MTSRDLELEIENAARELAERYEEINLLYTISEILGRTVSLDRAA
                     ATILHEVSETVGARRAAIYTCEPGSDMLDPIASVGVPHALPSVALSDPRNLAARAFRG
                     RHPVVIAPEDNVSDDGFRVGAVLAVPIMWTGEAGHPELLGAVSLTDRTTGAAFSAGDV
                     KLVAAIATQIGSAIQNARLVRESIEQQRLLQEVRLAHDLQMKLLPDGDVVAPQAEASA
                     RVVPAESVGGDFYHLFRLTPSATGVMIGDVSSHGYRAALIMALAMSAAAIHAQSTLDP
                     GAMLHALLYSLREELSNTEMFITLFYGVVDKGNGTVQYANAGHPHVFCCRPDSEPERL
                     GAIDPPLGMSDQAPTSRTVKWTSGKDLLVLFTDGITDALNEAGQPMGERRVLDTIKRY
                     AAEPPAVIVDRVFDALRQHTGDIPPRDDLTLVVLRS"
     gene            3032..3823
                     /gene="rsmA"
                     /locus_tag="VLI40_02360"
     CDS             3032..3823
                     /gene="rsmA"
                     /locus_tag="VLI40_02360"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HSU96038.1"
                     /translation="MGQHFLADERALARIVDALEPTASDTVLEIGPGRGALTDILANR
                     AGRVVAVELDRALAALLRERFAATPSVEIVEADILKVDPGTLGGPGYLLVGNVPYYIT
                     TPIIFHVLACALPRRAVFLVQREVATRAMADAGSKSYGALSVNLQVLARVERVFDIPP
                     GAFKPPPKVDSSVIRITPLTDPVLREGEQRHFRSFVQSLFSQRRKQIGTILRSLPPSA
                     SGVPAATLDALSTLGIPPTERPERITPLQFVELFRASSRNAVAPE"
     gene            complement(3885..>4432)
                     /locus_tag="VLI40_02365"
     CDS             complement(3885..>4432)
                     /locus_tag="VLI40_02365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96039.1"
                     /translation="LPACRPPAVAPSPAGVVGQARSTALPTALPEPRVYVLRLAKGLP
                     LPADLKPSDYDPRRGGYFERVLAGWLYLTSDSIYKIMICADLVDSTGRVPNTMDRGPS
                     EGRYWATGGRVYFSEQVADGPQDSAAVRIHGDTVEFVRNVYVRDRSSVIPRSLIPLYI
                     CAPVRASSGRDTRPAPSDASR"
BASE COUNT          813 a         1422 c         1381 g          816 t
ORIGIN      
        1 ggcggtgaac ggtcagtgac agacgggcgg cttcacagct tcatcgaggg aattcgaacg
       61 cgcgccgcgc tctccaagcg ccgcatcgcc tttcccgaga gcggcgatcc acgcgtgctt
      121 gccgcgacgg agcgcctcga cgcgctggct atctgcgatc cgctgctggt cgatcaggga
      181 ccggacgcgc tcgagcgcgc tgccgagatg gtcgcctccg gcgtcgctga tggaatggtt
      241 gccggcgccg acacgacgtc gcgcgacgtt ctgcgcgccg cgatccgcaa gatcggtctc
      301 gctcccggga tgctcaccgt ctccagcgcc ttctacatgg tcgcggcgac ggagtgggag
      361 gcagcctccc aggttctgac gttcaccgat tgtgccgtcg tcccatatcc gaccgccagc
      421 cagctcgccg atatcgccat ctcggccgcg agcgaccgtc gccgcattgt gggtgatgag
      481 ccgataatcg cctttctctc gttcagcact gccgggagcg cttcgggcgc ttccgtagac
      541 ctggtccgga cggcggtcga catcgtacgg cgccgagccc cgtctctcgt ggtggacgga
      601 gaattgcaag gagacgccgc gttggtgccg gcggtcgcgg ccaggaaggc cgccgattcg
      661 ccctgtggcg gacgcgcgaa tgttctcgtg tttccgtcac tcgacgccgg taacatcgcg
      721 tacaagttgg tccagaggct ggcaggcgct gcggcactcg gccccatcct tcagggactg
      781 gcgaggccag ccgccgatct gtcgcgcggc gcgacggtgg acgatataat caatgtgacg
      841 gcgatcacgg cattacaaac ggagaacgga tgagctttac gcttaagaag aacggcgatg
      901 tggttgtggt ggatgtggaa ggtcagctga tcgtcggcaa tcgtcaggag ctcaagcaga
      961 aagtgctgga cgagcttgag aagggcgacc gcaaattcct tattgatttt gcgcagaccg
     1021 gctacatcga cagctccgga ctcggcgtgc tcgtttcact cagcaaaaag attcgcgagc
     1081 acggtggcga actgcggctg gcaaatctca atgacgatct ccagacgctg ttcgagctca
     1141 ccaagctcga tacgctcttc cagatagcag agaccaggga gcgcgcactc gaaggttttt
     1201 gatgttgcaa atccggaacc ccgccggctc gctgacgttg cgcgggccgg ccagtcggac
     1261 tgtgccagcg atgcagcgcg cgcgccggtg acgccctcct acgtggcact cgacgtcgag
     1321 attccgagcg acgtcaaaca gatcgagccc atcgtgaatc tggtaaccga gcactgcaag
     1381 tcgctgcggt taccgcgccg tcagtgctcg ctgaacattc cggtcgcact cagcgaggcg
     1441 ctgtcaaacg cgataatacg cggaaatcac gaggacccgc gcaagcatgt tcgtctgcgt
     1501 gcgacggtct ctgatcgcgc gctcgtcttc gatgtggtgg acgaaggcaa cggcttcgac
     1561 atggaaaggg aatcgcacga tccgaccact ccggaataca tcacgcgcga ggacggccgc
     1621 ggcatcttcc tgatgcatca actgatggat cgtgtcgagc agttccgcgg tccgcagcat
     1681 gtcgtacgac tcacgctgaa ccgatgactt cgcgcgacct cgagcttgaa atcgagaacg
     1741 ccgcgcgcga gctcgccgaa cggtatgagg agatcaatct tctctatacg atcagcgaaa
     1801 tcctcggccg cacggtatcg ctcgatcgcg cggccgctac gattctccac gaagtgtccg
     1861 agacggtggg cgcgcggcgc gcagcgatct acacgtgtga gcccggcagc gacatgctcg
     1921 atccgatcgc atcggttggt gtcccgcacg cactgcccag cgtcgcattg tcggatccgc
     1981 ggaatctcgc ggcccgcgca tttcgggggc gccatccggt tgtcatcgcc cccgaagata
     2041 atgtttcgga cgacggattt cgcgtcggcg ccgtgcttgc agttccaatc atgtggactg
     2101 gcgaggctgg ccaccccgag ctgctcggcg ctgtcagcct taccgacaga acgaccggtg
     2161 ccgcgttcag cgcaggcgac gtcaagcttg ttgcagctat cgccacgcag atcggaagcg
     2221 cgatccagaa cgcgcgtctc gtgcgtgaat caatcgagca gcagcggttg ctccaggagg
     2281 ttcgcctcgc gcacgatctg cagatgaaac tcctgccgga tggcgacgtc gttgctccgc
     2341 aggccgaagc ttctgcgcgc gtcgtgccgg cggagagcgt cggcggtgac ttctaccatc
     2401 ttttcagact caccccgtct gcgacaggcg tgatgatcgg cgatgtgtcg agtcacggtt
     2461 atcgggccgc gcttatcatg gcgctcgcga tgagtgcagc tgcaattcac gcacagagca
     2521 cgctcgatcc aggcgccatg ctgcacgcgc tgctgtactc gttgcgtgag gagctctcga
     2581 acacggagat gttcatcaca ctgttctacg gtgtggtgga caaggggaat ggaacggtcc
     2641 agtacgccaa cgccggacac ccgcacgtat tctgctgtcg ccctgattcc gagcccgaac
     2701 gcctcggcgc gatcgatccg ccgctcggta tgagcgacca ggcaccaacg tcgcgcaccg
     2761 tcaaatggac gtcgggcaag gatctgctgg tgctgttcac agacggaatt accgacgcgc
     2821 tcaacgaggc tggacagccg atgggcgagc gacgtgtgct ggacacgatc aagcgctacg
     2881 ccgccgagcc tcccgcggtg atcgtcgatc gcgtattcga cgcgctgaga cagcacaccg
     2941 gcgacattcc gccgcgcgac gatctcaccc tggtcgtgct ccggagctga tcacgcgaac
     3001 gcgagacgga tttccgccca ctctcaaacg actgggccag cacttccttg ccgatgagcg
     3061 tgcacttgcg cgaatcgtcg acgcgcttga acccaccgcg agcgacaccg tactcgagat
     3121 cgggcccggc cgcggcgcgc tcactgacat tctcgccaac cgcgcaggcc gtgtcgtcgc
     3181 agtcgagctg gatcgcgccc tcgcagcgtt gttgcgcgag cgattcgcgg caacaccaag
     3241 tgtcgaaatt gtcgaagccg atatcctcaa ggtcgatccc ggcactctgg gcgggcctgg
     3301 ttatctgctc gtcggcaacg tgccgtatta cataaccacg ccgataatct tccacgtgct
     3361 cgcgtgcgcg ctcccgcgtc gcgcggtgtt tctcgtgcag cgcgaagtcg cgacccgcgc
     3421 gatggcggac gcaggatcca aaagttacgg cgcactgtcc gtcaacctgc aggtgctggc
     3481 gcgggtcgag cgcgtattcg acattccgcc cggcgcattc aagccgccgc cgaaagtcga
     3541 ttcatcggtg atacgcatca cgccgctgac cgatccggtt ctccgtgaag gagagcagag
     3601 acattttcgc tctttcgtgc agagcctgtt cagtcagcga cgcaagcaga tcggaacgat
     3661 cctgcgcagc cttccaccat ctgcttcagg cgtccccgcg gcgacgctcg atgcactgag
     3721 cacgctcggc attccaccga ccgaacggcc cgaacggatc acgccgttgc agttcgtcga
     3781 gctatttaga gcttcttcac ggaatgccgt ggctccggag tgacatcggt gaatagctga
     3841 tgcattcttt cctcgtcatc ccgccgcgcc aaactacgaa cgtttcaccg actcgcgtcg
     3901 ctcggcgcgg ggcgcgtatc ccgtcctgac gaggcgcgga cgggtgcgca gatgtagagc
     3961 gggatcaggg accgtggtat tacgctcgac cggtcgcgga catatacgtt ccgaacgaac
     4021 tccaccgtat ccccgtggat ccgcacggcg gcgctatcct gtggcccatc agccacttgc
     4081 tcgctgaagt agacccgtcc gcccgttgcc cagtatcggc cctcgcttgg ccccctatcc
     4141 atcgtgttcg gcactcgtcc tgtcgagtcg accagatcgg cgcagatcat gatcttgtaa
     4201 atgctgtcag acgtcaggta cagccagccg gcgaggacgc gctcgaaata tccgccgcgc
     4261 cgcgggtcgt agtcagacgg cttgaggtcg gcaggaagtg gcaagccttt ggccagccgg
     4321 agcacataga cacgcggctc agggagagcc gtgggcagcg ccgttgaccg cgcctggcca
     4381 accactccag ccggtgacgg cgcaacagca ggcgggcggc acgccggcag tg
//
LOCUS       DATIMD010000106         5782 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_909042, whole genome shotgun sequence.
ACCESSION   DATIMD010000106 DATIMD010000000
VERSION     DATIMD010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5782
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_909042"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1107
                     /locus_tag="VLI40_02370"
     CDS             <1..1107
                     /locus_tag="VLI40_02370"
                     /inference="COORDINATES: protein motif:HMM:NF023266.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ERAP1-like C-terminal domain-containing protein"
                     /protein_id="HSU96040.1"
                     /translation="TGPWPIRTQVLLRYPGGRTDRLLINLDSDSTVAQFANNPRAPEF
                     IFANAGDNAYALVIPDSASAHWLADSVGALTDPLTRAMGWDALWELVRRRALTPAEFL
                     SIAERTLPAEQDEQILGAQLRHVTRAAEAYLSPTERAALLPALESSLRSVESDTARPY
                     EIRKPNLDALIRVTHTPAGLEYLDRLLDSTTAAGAPLRAPTRWAIVTHLIATGAPTAT
                     TRLAAETKRDSTSEGKRYAFIARAATPDSNVKREYFTRYLSDPNLNEEWATSSLGAFN
                     EIDQQALTLKYLKPALDTLPWLQRNRRIFFIGSWLGGFIGGQTTPEAAATVRAFVNSN
                     ANLGADLRQKILQTLDELETTVEIRSAKRASGTF"
     gene            1120..2091
                     /locus_tag="VLI40_02375"
     CDS             1120..2091
                     /locus_tag="VLI40_02375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96041.1"
                     /translation="MLMFPHMFLHERWFTDEALFPVHFDNWLAPHSVIPIAIAVFVTA
                     IAMLLWKKRKNRNIVPGPMELGMPAVNYESLLSWLPLVIGVHMGVTLLVSGLSMQLFI
                     PNLAMPVNLLGGVLGLAEITIALSFIYGALTRIAAAALGALWIVGVIVFGPIRLLEHT
                     EILGVAFFLFALGRGPLAFDRALEWLHKPVTRLAPYAVPVLRVSLGFGMALVAFTEKL
                     WNLPMGLSFLAVHHFNFFPAIGLPAVDNTLFLIMAGTVELTVGLLLMSGAYTRLVILI
                     TLVPFNLTLPFLGWRELVGHLPTYGIMALLLIWGHTRSPGDRARVAE"
     gene            complement(2168..2719)
                     /gene="msrB"
                     /locus_tag="VLI40_02380"
     CDS             complement(2168..2719)
                     /gene="msrB"
                     /locus_tag="VLI40_02380"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HSU96042.1"
                     /translation="MFSFNRYLIGATVGVAFALSVAPALQAQQYSIKNMMNYKKPSQS
                     ELQRMLTPEQFDVTQHAATETPFHNAYWNNHEAGIYVDVVSGEPLFSSTDKFDSGTGW
                     PSFTRPLVPANIKTDTDHLLGYARTEVRSAHANSHLGHLFDDGPKPTGNRYCMNSASL
                     RFVPVDQLEAQGYGEYLGLFRKK"
     gene            complement(2806..3615)
                     /locus_tag="VLI40_02385"
     CDS             complement(2806..3615)
                     /locus_tag="VLI40_02385"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HSU96043.1"
                     /translation="MRTSITLSAIVFASLSAAELSAQSIADRVHAAPDGTVRFTFRAR
                     PNVCGSGNSVYVGDNGSRTSSGQRNTADVEWDADCGHGPVRIVLDVHDHTVTGLRSYV
                     GGRWRAVSGVTDLGEVAPQQAAAYLVTLAKQSSVAVGKKAIFPATLGDSVVIWPQLMQ
                     IARDATIPSETRRDAVFWLGQMAGDTVTSNLSQLVADDTVDRAVRESAVFALSQQPHG
                     EGVPALIHVVQTNRDPAVKKKALFWLGQSNDPRALTLFETILAGSGKSGKQ"
     gene            complement(3639..5078)
                     /locus_tag="VLI40_02390"
     CDS             complement(3639..5078)
                     /locus_tag="VLI40_02390"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HSU96044.1"
                     /translation="MKLYLIAAMAAALSIPAPQAHATAPAPNIPTASGLIHSMLVGPA
                     TADPADSLYRSARDALTRGDYDRAAKLFHEIGIRYPQSSLLPDAMYYEAFAQYRSGGS
                     GAMHAAYNKLAALQKRFPDFGRRSDAATLATRICGELAQQGDASCAASIAAQASGVAT
                     RAAALAAQASGAAATGSRAGGTASSGCVDDDDDERVAALNALLQMDADRAEPILEKVL
                     TRRDECSVSLRRKAVFLVAQKQSPQAVDVLLHVAQTDPDADVRGQAVFWLSQVHTDRA
                     VSVLSDILHKSSDEELREKALFALGQSDGDRGTAILRSYASDASQPSTLRSKAIFWLG
                     QQKGGVANAQFLRDLYAKLTDDDLKNQTLFAISQGSASDRAEWLLQLAQRGNESIDNR
                     KRALFLAGQAGASTQQLSRLYDALPPGELREQMIFVFSQSRDPAALDKLISIARTDKD
                     TDSRKKAIFWLGQSHDPRAIKAISEVLDK"
     gene            complement(5091..>5782)
                     /locus_tag="VLI40_02395"
     CDS             complement(5091..>5782)
                     /locus_tag="VLI40_02395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96045.1"
                     /translation="ERRRSIRRQPIWGVLAAAGLLLGVGIGIGVEAHSRVGPHASPLA
                     QRASPGASQNVPQSVPQVAVAATQPHDSTISTGGVATTQGVESTSRPRVVANHGTYAG
                     VNSAAASSGNARSQAYALATVRHFTAVEALLTSYRTEPHDAHGDAEMASWARALLSQT
                     RLLLDSPAAADPARQKLLQDLELVLVQMTQLSPANTPIDREMIDGSVRHSDVITRLRT
                     AVPAGGATHLQ"
BASE COUNT         1087 a         1741 c         1805 g         1149 t
ORIGIN      
        1 acgggaccat ggccgattcg cacacaagtg ctgctgagat atcctggagg ccgaacagat
       61 cggctgttga tcaatctgga ttcagacagc acggtcgcgc agttcgccaa caacccgcgt
      121 gcgccggaat tcatattcgc caatgccggt gacaacgcct acgcgctcgt cattcccgac
      181 tcggcgagcg ctcactggct ggccgacagc gtcggcgcgc tgaccgatcc actgacacgc
      241 gcgatggggt gggacgcgct gtgggaactg gtgcgccgcc gagcgcttac accggcggaa
      301 ttcctatcga tcgccgagcg aacgttaccg gcggagcagg acgagcagat tctcggcgct
      361 caattgcgtc atgtgacgcg cgcggcagag gcgtacctgt cgccgacaga gcgtgccgcg
      421 ctgctgcccg cactggaaag ctcacttcga tccgtcgaga gcgatactgc gcggccatac
      481 gagatccgaa agcccaacct ggatgcgctg atccgggtga cgcacacccc cgcgggactc
      541 gagtacctgg atcgtcttct cgacagcaca actgcggccg gtgcaccgct tcgtgcaccg
      601 acgcgatggg caatcgtcac gcatctgatt gcgacaggcg caccgaccgc gacgacgcgg
      661 ctggcagcag aaacaaagcg cgactcgacc agcgagggca agcggtatgc gttcatcgca
      721 agggcagcga cgccggactc gaatgtcaag cgcgagtatt tcacacgcta tctgagcgat
      781 ccgaatctca atgaagaatg ggccacgtcg agcctcggag cgttcaacga gatcgatcag
      841 caggccctca cgctcaagta tctcaagccg gcgttggata cactgccatg gctacagcgc
      901 aatcgacgta tcttcttcat cgggtcgtgg ctgggcggct tcattggcgg ccagacaact
      961 cccgaagctg ccgcgacggt gcgtgcattc gtcaattcaa acgcgaatct tggcgccgat
     1021 ttgcggcaga agatcctgca gacgctggat gagcttgaga cgaccgtgga gatccggtcg
     1081 gcaaagcgcg cgtctggcac tttctgaccg cagggcatca tgctgatgtt cccgcacatg
     1141 tttctgcacg agcggtggtt cactgacgaa gcgctcttcc ccgtgcactt cgacaactgg
     1201 cttgcacctc atagcgtcat tccaatagct atcgctgttt tcgttacggc aatcgcgatg
     1261 ctgctgtgga agaagcgcaa gaaccggaac atcgtgcctg gcccgatgga gctcgggatg
     1321 ccggcggtaa actacgagag tctcctttca tggctgcctc tcgttatcgg tgtgcacatg
     1381 ggcgtgaccc tgctcgtgag cggattgagc atgcagttgt tcatcccgaa tctcgcgatg
     1441 ccggtgaacc tgctcggcgg agtgctcggg ctggccgaga tcacgatcgc gctgagcttc
     1501 atctacggtg cgctcactcg tattgccgca gctgcgctcg gcgcgttgtg gatcgtggga
     1561 gtcatagtgt ttggtccaat ccgcctgctc gagcataccg agattcttgg cgtcgcattc
     1621 ttcctgttcg cattgggacg aggaccgctc gcattcgacc gggcactgga gtggctgcac
     1681 aaacccgtca ccaggctcgc gccgtatgcg gtgccagtac tgcgagtcag tcttgggttc
     1741 gggatggcgc ttgtcgcatt taccgagaag ttgtggaacc tgccgatggg gttgtcattc
     1801 ctcgcggtcc accatttcaa tttctttccg gcgatcggac tgccggctgt cgataacacg
     1861 ctctttctga tcatggcggg aacggtcgag ctgacagtcg gattattact gatgtccgga
     1921 gcatacacac gactcgtgat tctcatcacg ctggtgccgt tcaatctgac gcttccgttt
     1981 ctgggctggc gcgagctggt tggccatctg ccgacgtacg ggataatggc gttgctgttg
     2041 atctggggtc atacgcgatc gcccggagac cgcgcacgcg tcgcggaata gcaaatcggg
     2101 aatgaaacaa tcgggtgcgt ccgcgagcaa tgcggacgca cccgatagct gccgagaaaa
     2161 acagctgcta cttcttcctg aacagaccca gatattcgcc gtaaccctgc gcttcgagct
     2221 gatctacagg aacaaagcga agtgatgcag agttcatgca gtagcgattt cccgttggct
     2281 tgggaccatc gtcgaacaga tggccgagat gggagttcgc gtgcgctgac cgaacttccg
     2341 ttctggcgta accgagcaga tgatcggtat cagtcttgat gttcgccgga acgagaggtc
     2401 tggtgaaact cggccacccg gtcccggagt caaacttgtc cgtcgagctg aacagtggct
     2461 cgcctgaaac tacatcgacg tagataccgg cttcgtggtt attccagtat gcgttgtgga
     2521 acggcgtctc tgtagctgcg tgttgcgtga catcgaactg ctcaggagtc aacatccttt
     2581 gcagctctga ttgtgaaggc ttcttgtaat tcatcatgtt cttgatcgag tactgctgcg
     2641 cctgcagcgc gggtgcgacc gacagcgcga acgccacacc cactgtcgcg ccgatcaggt
     2701 accggttgaa cgaaaacatc gtgcatgtcc tgaagtatgg tttagcgggt acgtccgtac
     2761 cgcatgtctc tctgaaatat gtacgccagg acaggcgaaa tggttctatt gtttcccgga
     2821 cttgccggag ccggccagaa tggtctcgaa caatgtaagg gcgcgcgggt cgttcgactg
     2881 gcctagccag aagagcgctt tcttcttcac agcgggatcc cggttggtct ggaccacgtg
     2941 aatcagcgcc ggaactccct caccgtgcgg ctgttgagac agagcgaaga cggcgctttc
     3001 tcgaactgcg cgatcgaccg tgtcgtcggc aaccagctgg gagaggttcg acgtgacggt
     3061 gtcgcccgcc atctggccga gccagaagac ggcgtcacgt ctggtctcgc tcgggatcgt
     3121 tgcgtcgcgc gcaatctgca tcagctgagg ccagatgacg acgctgtcgc cgagcgtggc
     3181 gggaaagatg gctttctttc caaccgcgac ggatgattgt ttcgcgagtg tcacgaggta
     3241 agcggcagct tgctgcggcg cgacctcacc gagatcggtg acgccgctca ccgcacgcca
     3301 gcgaccgccg acatacgatc tgagcccggt aaccgtatga tcgtgcacgt cgagcacgat
     3361 gcggaccggg ccgtggccgc aatcggcgtc ccactcgaca tctgcggtat tacgttggcc
     3421 ggagctagtg cggctgccgt tatcgccgac gtagacggag ttgcccgagc cgcacacgtt
     3481 gggacgtgcc cggaaggtaa accgcaccgt tccatccggc gcagcgtgta cgcggtcggc
     3541 aatcgactga gctgacaact cagccgccga aagcgatgca aagacgatgg ctgagagcgt
     3601 gatcgacgtt ctcacacggg tggaaatcga atttctgatc acttgtcgag tacctcgcta
     3661 atggccttga ttgcacgcgg gtcgtgtgat tgtcccagcc agaagatcgc cttcttgcgc
     3721 gagtccgtgt ccttatccgt gcgcgcgatc gagatgagtt tgtcgagcgc ggcgggatca
     3781 cgactctgcg agaagacgaa aatcatctgc tcgcgaagct cgccgggtgg tagagcatcg
     3841 tacaggcgac tcagctgctg agtcgaggcg cccgcctgac cggccaggaa gagtgcgcgc
     3901 tttctgttat cgatgctctc gttgccgcgc tgcgcaagct gcagcagcca ctccgcgcga
     3961 tcggacgcag atccctgtga gattgcgaaa agcgtctggt ttttgagatc gtcgtcggta
     4021 agcttcgcat acaggtcgcg aagaaactgg gcattcgcca caccgccctt ctgctggccg
     4081 agccagaaga tcgccttact gcgcagcgtg ctgggctgcg atgcatcgga tgcgtacgat
     4141 cgaaggatgg ccgtcccccg gtcaccgtcc gactgcccga gagcgaacaa cgccttctcg
     4201 cgaagctcct cgtccgaaga cttgtgcagg atgtccgaca gcacactcac tgcgcgatca
     4261 gtgtgcacct gagacaacca gaagacagcc tggccgcgca cgtccgcgtc ggggtccgtc
     4321 tgagctacgt gcagcaatac gtctaccgcc tgcggtgact gtttctgcgc gaccaggaac
     4381 acagcctttc tgcggagcga cactgagcac tcgtcacgac gcgtgagcac cttttcaaga
     4441 atgggctcgg cgcgatccgc atccatctgg agcagtgcgt tgagggcggc gacacgctcg
     4501 tcgtcatcgt catcgacgca gccggacgag gcagtgccac ccgcacgcga accggtcgca
     4561 gcagcgccgg atgcctgtgc ggcgagcgcg gcggcccggg tagccacccc ggacgcctgc
     4621 gctgctatgc tagcggcgca gctagcgtca ccctgttgcg cgagctctcc gcagatccgc
     4681 gttgcgagcg tggccgcatc gctgcggcga ccgaagtcgg ggaagcgctt ctgtagcgcc
     4741 gcgagcttgt tgtacgcagc gtgcatcgcg ccagaacccc cggagcgata ctgcgcgaag
     4801 gcctcatagt acatcgcgtc cggtagcagg gacgactgcg ggtagcgtat cccaatctcg
     4861 tggaacagct tcgccgcacg atcgtagtcg cccctggtga gcgcatcgcg agcgctgcga
     4921 tacagcgagt ccgccggatc cgcggtcgcc ggtccgacga gcatcgagtg gatgagaccg
     4981 ctggctgtcg ggatattcgg cgcgggagct gttgcatgcg cttgcggtgc cggaatcgag
     5041 agcgctgccg ccatcgcggc aatcaagtag agcttcatga caatccttcc ttattgtagg
     5101 tgcgttgcgc cgcccgccgg taccgcggtg cgaaggcgtg ttattacatc cgaatggcga
     5161 accgatccat cgatcatctc tcgatcgatc ggcgtattcg ccggtgatag ctgggtcatc
     5221 tgaacgagca cgagctcgag atcctgtaac agtttctgtc gcgccgggtc cgcagcggct
     5281 ggtgagtcga gcaacaggcg tgtctgcgac agcagcgccc gggcccacga cgccatctcg
     5341 gcgtcgccgt gcgcgtcgtg tggttcggtc ctgtatgatg tgagcaacgc ttcgactgcg
     5401 gtgaagtgac gaactgtcgc cagcgcgtac gcttgcgacc gcgcattgcc gctggatgcg
     5461 gcggcgctat ttacgcccgc gtaggttccg tgattggcaa cgacgcgagg tcgagacgtg
     5521 gattccacgc cctgcgttgt cgccacgccg ccggtactga tggtcgagtc gtgcggctgc
     5581 gtcgccgcga ctgcgacctg cggaacactc tgcggaacat tttgagacgc gcccggagac
     5641 gcgcgctgcg cgagcgggct cgcgtgcggc ccgacgcgcg agtgcgcttc aaccccgatt
     5701 ccgataccga ctccaagcag caggcctgct gccgcgagca cgccccagat cggctgccgg
     5761 cggatcgatc gacgtcgctc gc
//
LOCUS       DATIMD010000107         3757 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1775869, whole genome shotgun sequence.
ACCESSION   DATIMD010000107 DATIMD010000000
VERSION     DATIMD010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3757
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1775869"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1436)
                     /locus_tag="VLI40_02400"
     CDS             complement(<1..1436)
                     /locus_tag="VLI40_02400"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HSU96046.1"
                     /translation="MMEYPDTFAPSVGAPMERVDGPLKVRGAATYASEMPVRNAVHAV
                     MITSTIPAGRIRSMDTTAASRAPGVLAVITHENAMKLPGAPKPTGAAAEQSGGRSGEQ
                     SNQQSNQQSGGSQGGGQSGTRRQPPQRIPTLLQDDRVFYNGQPIGIVVADTFEHAMAA
                     VALVRTTYSATHAELDMATGPKAPGDNVHPTGEEPRFSTRGDIEAGLRDAAVRVDHTY
                     TTPFETHNPMETHNTVAVWEGDKLTLYDSTQGVFSVRGTVARTFSLPQENVRVVSPFT
                     GGGFGSKGGPWSHVMLSAMAAKHVGRPVKLVLTRRQMFGPVGGRPRTVQRITLGATRD
                     GQLTAIRHISTSNSSMIEDWLEPSAMQTRMLYASPNAVTDHEIVRLNVGSPTFMRAPG
                     ESSGTYALESAMDELAVALKMDPVALRLRNYAERDPQSGRPWSSKSLRQCYQIASERF
                     GWSKRNPEPRSMRDGRLLVGWGMATATYP"
     gene            complement(1433..2440)
                     /locus_tag="VLI40_02405"
     CDS             complement(1433..2440)
                     /locus_tag="VLI40_02405"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HSU96047.1"
                     /translation="MKSFDYTLAHDVADAINAASATDARFVAGGTTLLDLMKLDVETP
                     THVIDINALPASDPNLGKVVDLPGGGLRIGALARMSDTAWDPRVRDGYPMLSQSLLLA
                     ASGQIRNMASIGGNVLQRTRCYYFRDTATPCNKREPGTGCSALHGINRIHAILGASDQ
                     CIATHPSDLCVALAALDAVVHVRGAGTNGQNAERTIPFTEFHLVPDSHPDRENVLRQG
                     DLITAIDVPALSFARRSLYRKVRDRASYAFALASAAVAVDLRDGVIHDSRIAFGGIAT
                     KPWRSKEAERALAGKPATAASYRAAAEVALHDAVPRGENAFKIELAKRTLVRALTEVT
                     A"
     gene            complement(2437..3645)
                     /locus_tag="VLI40_02410"
     CDS             complement(2437..3645)
                     /locus_tag="VLI40_02410"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HSU96048.1"
                     /translation="MNSQDTSADGPVERISPLDDTLHDATLTDVRGHRHRLSDFHGSP
                     VVLVFHTRGWDPTRAELVEAYNRIVAHVARGVQDGVRDGIHGGARLVSIVPDVPWHSL
                     AFGGDDTVSVPIIVSNARDLRERFGIGDGATVIVLDGDGRVCWRHAAGHALPRPDVLA
                     NALDELAAPAELMAEHAVEYAIDGATARRPMVWTRRQFVAAILAAGVVLMLPPLVSSA
                     DASAAEPPDDGSPGSAVQITLNVNGRKVPLTIEPRVTLLDALREYAGLTGTKKGCDHG
                     QCGACTVHVDGRRVLSCLTLAMMAQGKAVTTIEGLATGQSTDATGLDPLQRAFIAHDG
                     FQCGYCTPGQIMSATAVLKEPWGPTDADVKEAMSGNICRCGAYPGIVAAVQEVRGHGG
                     SQNAPARSDA"
BASE COUNT          645 a         1188 c         1177 g          747 t
ORIGIN      
        1 gggtaggtcg cggtcgccat tccccaaccg acgagcaggc ggccgtcgcg catcgagcgt
       61 ggctccggat tgcgcttgct ccatccgaac cgctcgctcg cgatctggta gcactggcga
      121 agcgatttac tcgaccatgg cctgccactc tgcggatcgc gttccgcgta gttgcggagt
      181 cggagcgcga ccggatccat cttcagcgca accgcaagct cgtccatcgc actttcgagc
      241 gcatatgtcc cgctcgattc accgggcgcg cgcatgaagg tcggtgatcc aacgttcagc
      301 cgcacgatct cgtgatcggt cactgcgttg ggtgatgcgt acagcatgcg cgtctgcatt
      361 gctgaaggct cgagccagtc ctctatcatc gacgaattcg aggtgctgat gtggcggatc
      421 gccgtcaact ggccatcgcg cgtagcgcca agtgttattc gctggaccgt gcgcggacgt
      481 cccccaaccg gaccgaacat ctgcctgcgt gtgaggacca gctttacagg ccgcccgacg
      541 tgcttcgcgg ccattgcaga aagcatcaca tgtgaccacg ggccgccctt gctgccgaag
      601 ccgccgcctg tgaatggaga tacgacgcgc acgttttcct gcggcaggga gaaggtccgc
      661 gcgacagtgc cacgcacgct gaacactcct tgcgtggaat cgtacaacgt aagtttgtca
      721 ccttcccaca cggcgaccgt gttgtgtgtt tccatgggat tgtgagtttc gaacggggtc
      781 gtgtaagtgt ggtccacacg cactgccgca tcgcgcagtc ccgcttcgat atcaccgcgc
      841 gtgctgaaac gcggctcctc gccggtgggg tgcacgttgt ctcccggcgc ttttggcccc
      901 gtcgccatgt ccagctcggc gtgagtcgcg gaataggtcg tgcgcacaag tgccacggca
      961 gccattgcgt gctcaaaggt atcggcgacg acgatcccga tcggctgtcc attgtagaag
     1021 acgcgatcgt cctggagcag cgtcggaatt ctctgcggcg gttgccttct ggtgccagac
     1081 tgtccgccac cctgcgagcc acccgattgt tgattggatt gttgattgga ttgctcgccg
     1141 ctcctgcctc cggattgctc ggcggccgca ccggtcggct tcggtgcgcc gggcagcttc
     1201 atcgcgtttt catgcgttat cacggcaagg acaccgggtg cgcgagatgc cgcggtggtg
     1261 tccatacttc tgattcgtcc tgccgggatc gtactcgtga tcattacggc gtgcactgcg
     1321 ttgcgcaccg gcatctcgga cgcatacgtc gccgctccgc gcaccttcaa cgggccatcg
     1381 acgcgctcca tgggcgcacc gacgcttggc gcgaacgtat ccggatattc catcatgctg
     1441 tcacctccgt aagcgcgcgc acgagtgtcc tctttgcgag ctctatcttg aatgcatttt
     1501 cgccacgcgg aacggcatcg tgcagcgcga cttcggcggc tgctcgataa ctcgccgcag
     1561 tggcgggctt tcccgcaagc gcacgctccg cttcctttga tcgccacggc tttgttgcga
     1621 tcccaccaaa tgcaatgcgc gagtcgtgta tcacgccatc gcgcagatcg acagcgaccg
     1681 ccgcggacgc gagcgcgaat gcgtagctcg cgcgatcccg caccttgcga tacaacgatc
     1741 ggcgcgcgaa cgaaagtgcg ggaacatcga tcgcggtgat caggtcgccc tgccgcagta
     1801 cgttctcccg atcgggatga ctatccggca ccaggtggaa ttcggtgaac ggaattgttc
     1861 gctcggcatt ctgaccgttg gtacccgctc cgcgtacatg cacgacggcg tccagtgccg
     1921 caagcgcgac gcacagatcg gacggatgcg tcgcgatgca ctgatcgctg gcgccgagta
     1981 ttgcatggat gcggttgatg ccatgtagcg cggagcagcc ggtgcccggc tcgcgcttgt
     2041 tgcacggcgt cgcggtatcg cggaagtaat agcagcgagt gcgttgcagc acgttaccgc
     2101 cgatggatgc catgttgcga atctggcccg acgccgcgag cagcagagac tgactcagca
     2161 tcgggtatcc atcacgcacg cgcggatccc aggcggtgtc gctcattcgt gcgagcgcac
     2221 cgatgcgcaa tccgccgccg ggaagatcga cgaccttccc caggtttgga tcagaagctg
     2281 gaagggcgtt gatgtcgatt acatgcgtcg gcgtctccac atccagcttc atcagatcga
     2341 gcagagtggt gcctccagca acgaatcgtg cgtctgtagc gctggccgca ttgatcgcat
     2401 ccgcgacatc atgcgccagt gtgtaatcga aggatttcat gcgtcgctcc gcgccggtgc
     2461 gttctgcgat ccaccatggc cgcgtacttc ctgcacggct gcgacgatac ccgggtatgc
     2521 gccgcatctg cagatgttgc cgctcatcgc ctccttcacg tctgcgtcgg tcggtcccca
     2581 cggctccttg agcactgccg tcgcggacat gatctgaccc ggggtgcagt agccgcactg
     2641 aaagccgtcg tgcgcgatga atgcgcgctg caggggatcg agaccggtgg cgtcggtcga
     2701 ttggccggtc gccagtcctt ctatggtcgt gaccgccttt ccctgcgcca tcatcgcgag
     2761 cgtgagacat gaaagcactc ggcggccgtc cacgtgcacc gtgcatgcac cgcactgtcc
     2821 gtgatcgcag cccttcttgg tgccggtgag gcctgcgtat tcgcgcagcg cgtcgagtag
     2881 cgtgacgcgt ggctcgatgg tgagcggaac cttgcgccca ttcacgttca gcgtgatctg
     2941 cacggcggag ccgggagagc cgtcgtctgg tggctcggcc gcgctggcgt ccgctgatga
     3001 gaccagggga ggaagcatca ataccactcc tgcggcgagg attgctgcga cgaattgtcg
     3061 ccgggtccat accatcggcc ggcgggcagt agcaccatcg atcgcatact cgaccgcatg
     3121 ttcggccatg agttcggcgg gggcggcgag ctcatccagg gcattcgcga ggacgtccgg
     3181 gcggggaagc gcatggcctg cagcatgacg ccagcagacg cgtccgtcgc cgtccagcac
     3241 aatgaccgta gcgccgtcgc cgatgccgaa ccgctcccga agatcgcgtg cgttacttac
     3301 gatgatcggc acggacaccg tgtcatcgcc gccaaatgcg agggaatgcc acggtacatc
     3361 cgggacgatg ctcacgaggc gcgcaccgcc gtgaataccg tcccgaacgc cgtcctgtac
     3421 accacgcgca acgtgcgcga ctatacgatt gtacgcctct accagctcgg cgcgagtggg
     3481 gtcccagccg cgtgtatgga acacgagaac caccggtgag ccgtggaaat cggacaggcg
     3541 atgtcggtgg cctctgacat cggtcagggt ggcatcatgc agcgtgtcat ccagtggcga
     3601 aatccgctcc acgggtccgt ccgcggacgt atcttggctg ttcatcgact catctctctg
     3661 gctcgaagtc ggcgcgcatt gcaccggagc aggaagtccg ggtccatgcg tgagcgatgg
     3721 cttcaatttc gagcggtgag taatgcaaat tctggtg
//
LOCUS       DATIMD010000108         8466 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_43941, whole genome shotgun sequence.
ACCESSION   DATIMD010000108 DATIMD010000000
VERSION     DATIMD010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8466
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43941"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..737)
                     /locus_tag="VLI40_02415"
     CDS             complement(<1..737)
                     /locus_tag="VLI40_02415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HSU96049.1"
                     /translation="MIRNALLYLSNQPRVFKFVKTNRLAKGFASRFVAGETLETAVPA
                     VRELNGRGITASLDLLGESVHNEAEARAAGAEYLKILDRIAREKLDANVSVKLTAMGL
                     DVSEELCVSIMGDVLERARKYGSFVRLDMEASNYTQKTLELFENRLYPEFRGTVGVVL
                     QSYLYRTQADVEHMNTLGARVRICKGAYKEPASVAFPEKRDVDANYVTCMQSLLLHGT
                     YPGIATHDEVIIEKVKQFARENDIKPDR"
     gene            complement(739..2382)
                     /locus_tag="VLI40_02420"
     CDS             complement(739..2382)
                     /locus_tag="VLI40_02420"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family metallopeptidase"
                     /protein_id="HSU96050.1"
                     /translation="MNHTITPVMRGVVAAGIASFAVACAARIDPSRPIYPMPQTRAEA
                     SDYNRTSSYGDVMAFINGLRSRNAPLAYGVIGKTTEGRDIPYLIASRPIVRTPEEARK
                     LGRPIVYVNANIHAGEVEGKEALLALVRDLTYQRGPNVLDSLVLIAVPIYNADGNEKF
                     ADQAVNRREQNGPELVGTRANGQGLDLNRDYVKAEAPETRAALAMFDKWDPDVYVDLH
                     TTDGSFHGFALTYSPSLNPASYAPGFAGNLTRDTMLPEIRARMHNRGLEVFDYGNFGR
                     EDGRDALTDTVKDGWYTYEHTPRYGTNYYGIRGRVSILSEAFSHDPFKRRVASTYAFV
                     QEILSAAARHAPQLEQIRVTADKVQEADVPIRSRMTTKPFDAPIPFEVLTRTGDSTRT
                     QAGVPKGVRRTGRFITQVMPVYDRFEPTLMVRHPDAYLVPNDAKIVALLTLHGLAVEP
                     FSSGGATSQVSVFTIDSVTTSARAFQGHKETRVTGTWSAPAARNIAGEYVVVSASGRF
                     GPLAAYLLEPESDDGLVDWNFFDTSLATGKPFPVIRLYK"
     gene            complement(2400..2654)
                     /locus_tag="VLI40_02425"
     CDS             complement(2400..2654)
                     /locus_tag="VLI40_02425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96051.1"
                     /translation="MLNEAARCLEEGIIRSARDGDVGAVFGIGFPPFRGGPFRYMDSI
                     GIEPLLQQLDDLNVRFPGRFEAASILLQMARSTARFYPQD"
     gene            complement(2658..4568)
                     /locus_tag="VLI40_02430"
     CDS             complement(2658..4568)
                     /locus_tag="VLI40_02430"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HSU96052.1"
                     /translation="MNTPVTNARYQAPVTMEIEDGIAILTVDLIGESVNKITRGMRDA
                     FVELFDRIDRDETVKGAVVISGKPDTFIAGADIEEFTQLRDAEDAERLSRDGQALVEH
                     FEMARVPFVAAIHGACLGGGLEASLACRWRIATDDPKTILAFPEVQLGLIPGAGGTQR
                     LPRLIGARAALDMILTSRNVRAKKALQIGLVDEMVHPAILRRIAIDRARALGEGRLKR
                     TSRSRGTSGLLLDSNPVGRSVVFRKAREEAEKKTHGNFPAPLAAIDAVEAGMSRGMPA
                     GLREESRLFGEMAATDVSKQLIFLFFATTELKKDSGLAEGHTAAALSVQKIGIIGSGF
                     MGAGIASVAVQHGTVVRMKDADWAHIGKGLSEISKVVKERLTKRQITRVQYSDTMSLV
                     SGTIDYSGFANVDLVIEAVFEDLDVKHTVLREVESVVKPEAIFATNTSTLPVTRIAEV
                     SRRPERVLGMHFFSPVSKMPLLEVIVTERTSDSVTATAVAYGKKLGKTVIVVNDSPGF
                     FVNRILAPYISEAGRLLDEGGSIETIDRALVDFGFPVGPITLVDEVGLDIAGKVGQIM
                     FDEFGSRLSQPESLRSVIDAGRFGRKSKKGFYIYDQAGRKGGVDPSVYEIFAPGRARA
                     EISEDDIQRRTV"
     gene            complement(4580..5878)
                     /gene="fadI"
                     /locus_tag="VLI40_02435"
     CDS             complement(4580..5878)
                     /gene="fadI"
                     /locus_tag="VLI40_02435"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadI"
                     /protein_id="HSU96053.1"
                     /translation="MPTFGNGRRVAVVAGVRTPFTRAGTVFKGLSAIELGKLCVGELL
                     QRSNLSGNEVEALIFGTVVPNVLAPNIAREVSLMPMLPKGVQAFSVSRACASANQAIT
                     DAADQIALGHNDVIIAGGAESLSNVPVLHSRGFADALVAASRARSLTGRIGALARIRP
                     RDLVPITPAIAEPTTGETMGESAEKMAKINDISREDQDHFALRSHRLAAAGTADGRLT
                     AEISPVVVPPRYDVVVKTDNGIREDTSYEKLAALKPVFDRRYGSVTAGNSSPLTDGGA
                     CVLLMSEAKAKSLGYEPLGYIKSYAYAALDPGEQLLMGPVLAAPVALYRAGLTLADMD
                     LVEMHEAFAAQVLCNLKGFESAEWAHRAGFEYPVGEVDRARLNVMGGSIALGHPFGAT
                     GARITTTLLNEMGRRDAQYGLMTVCAAGGLGFAMVLERDV"
     gene            complement(5957..6685)
                     /locus_tag="VLI40_02440"
     CDS             complement(5957..6685)
                     /locus_tag="VLI40_02440"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSU96054.1"
                     /translation="MTTALLRDSPASTTDRSRPPSVLLVEKHALIRAGLRSLIEAIPG
                     LSVVAEAADMAGAVDLAREHQPDAILFGATAWARGADLRHQLHRELPQSCVLVIGEES
                     VAGESAAGESAADPESGGPAGQYPGGYCCLPREAGIQEFCAAMSSLLGGRCADCRFRR
                     GTCPAMQNVALLTRRERQVAVRVAEGLTSKQIASTLGVAIRTVNTYRESLARKIGASS
                     AAALTRFVIESGLRDTSIAGDGGL"
     gene            complement(6860..7396)
                     /locus_tag="VLI40_02445"
     CDS             complement(6860..7396)
                     /locus_tag="VLI40_02445"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HSU96055.1"
                     /translation="MSVAVLAGTLFVSSAGAQAVTIMRPRPVPEPKPFQRLSSSIHAL
                     RDSIVALSRAQLGVRYKRGAESPTSGFDCSGLVQYVMEHFGAKLPRTSREQALVGKKI
                     ERDIASLKPGDLLTFGHGRHISHIGIYIGDGRYVHAPTPGSRVKVESLANTKSSWWKG
                     ARRVFAFDDSQNPDSVLN"
     gene            complement(7512..8294)
                     /locus_tag="VLI40_02450"
     CDS             complement(7512..8294)
                     /locus_tag="VLI40_02450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96056.1"
                     /translation="MTHARLLARFGIGALVMLSGGCTLRRMESSATRTAHVPVAGATV
                     VVLDVGAGYLRVQGVSSATEVLVTGTAHAATAAALDEIQVDTRRVGDTIFVSSAIPPS
                     RNQPGAAAALDLMVQLPSSLALDVTDSTGESTFRNVGAMRLRHGDGGLDVDSVGGKLD
                     ITDGGGDMIVANVRGDVHIMDGGGSIYLSNIAGSVTIPQDGSGEIQLSNIGGDVTVGS
                     KASGEVAAREVGGNLVVRANGNGSIEYRDVKGHVSVPAARYH"
BASE COUNT         1593 a         2738 c         2488 g         1647 t
ORIGIN      
        1 cgatccggct tgatgtcgtt ctcacgtgcg aactgcttca ccttctcgat tatgacttca
       61 tcgtgggttg cgataccggg ataggtaccg tgcaggagga ggctctgcat gcaagtgacg
      121 taattggcgt ccacatcgcg cttttcagga aacgcaacgc tcgccggctc cttgtaggct
      181 cccttgcata tacgaacgcg ggcgccgagc gtattcatgt gctcgacgtc cgcctgagtg
      241 cgatagagat agctctgcag cacgactccg acagtgccgc ggaattccgg atagaggcga
      301 ttctcgaaca gctcgagcgt cttctgcgtg tagttgctcg cttccatgtc gagcctgacg
      361 aagctgccgt actttcgcgc ccgctcgagc acatcgccca ttatcgaaac gcagagctcc
      421 tcggaaacgt cgagacccat tgccgtaagc ttgacgctca cgttggcatc cagcttctcg
      481 cgcgcgatgc gatcgagaat cttgaggtac tcggcgccgg ccgctcgcgc ctcggcctcg
      541 ttgtgaacgc tctcgccaag caggtcgagc gaagccgtga ttccgcggcc gttgagctcc
      601 cgaacagcgg gaaccgcggt ctcgagtgtc tcgccagcga cgaagcggga agcgaaccct
      661 ttagccagac gattggtctt gacgaacttg aaaactcgtg gctggttgga aagatagagc
      721 agtgcgtttc ggatcatctt acttgtatag acggattact gggaacggtt tgccagtcgc
      781 gagcgacgtg tcgaagaaat tccagtcgac cagtccgtca tcggattccg gctccaaaag
      841 ataagcggcg agcgggccga agcgcccact cgccgatacg actacatact cgccagcgat
      901 atttcgcgcg gccggcgcac tccaggtgcc cgtcactcgg gtctccttgt gtccctgaaa
      961 ggcgcgtgca gaggtggtta ccgagtcgat cgtgaatacg gaaacctgac tggtcgctcc
     1021 gccggaggag aacggctcga ccgcaagtcc gtggagtgtg agcagcgcca cgatcttcgc
     1081 gtcgttcgga accagatacg catccggatg acgcaccatc agtgtcggct cgaagcggtc
     1141 gtacaccggc atcacctggg tgatgaagcg gccggtacgc cgtacgccct tcggcacgcc
     1201 cgcctgcgtc cgcgtcgaat ctccggttcg cgtcagaacc tcgaacggaa tcggcgcgtc
     1261 gaacggcttc gtcgtcattc gcgagcgaat cgggacgtcg gcttcctgca ccttgtccgc
     1321 ggtaactctg atctgctcga gctgcggcgc gtgtcgtgcc gctgcggaca ggatttcctg
     1381 aacgaaggca taggtcgaag cgacacgacg cttgaacgga tcgtgcgaga atgcctcact
     1441 cagaatggac acgcgcccgc gaatgccgta atagttggta ccgtagcgcg gcgtatgttc
     1501 gtaagtgtac cagccgtcct tgaccgtgtc ggtcagcgcg tcgcgtccgt cttcccgacc
     1561 gaagttgccg tagtcgaaca cctcgaggcc gcggttgtgc atgcgcgccc gaatttcggg
     1621 gagcatcgtg tcgcgcgtga gattcccggc gaagccggga gcgtacgagg ccggattcaa
     1681 cgatggtgaa taggtcagcg cgaatccatg aaagcttccg tcagtcgtgt ggagatcgac
     1741 gtagacgtcc ggatcccact tgtcgaacat ggcgagcgcg gcgcgcgttt cgggcgcttc
     1801 ggccttcaca tagtcacgat tgagatcgag gccctgtccg ttcgccctcg tccccaccag
     1861 ctccggcccg ttctgctctc ttcgattaac ggcctgatcc gcgaacttct cgttgccgtc
     1921 ggcattgtag atcggcaccg caatcagtac gagcgaatcc agtacgttgg gcccgcgctg
     1981 gtatgtgaga tcgcgcacca gcgcgagcag tgcttccttg ccctccacct cgccggcgtg
     2041 gatgttcgcg ttgacataca cgatcggccg gccaagcttg cgcgcctctt ccggtgttct
     2101 gacgatcggc cgcgacgcga tgagatacgg aatgtcacgc ccctcggtcg tcttgccgat
     2161 cacgccatat gcgagcggcg cgttgcgaga gcgaagtccg ttgatgaacg ccatcacgtc
     2221 gccgtagctg gacgtcctgt tgtaatccga cgcctccgcg cgagtctgcg gcattggata
     2281 gatcggtcgc gatggatcga ttcgcgcggc gcacgccacg gcgaacgagg cgatgcctgc
     2341 cgcgacaacg ccgcgcatga cgggcgtgat tgtatggttc atctggtggt ttgggatggt
     2401 cagtcctgcg gatagaagcg cgcggtggag cgcgccattt gcaacagaat ggatgcggct
     2461 tcgaaccgtc cagggaacct cacgttcagg tcgtcgagct gttgcaggag cggctcgata
     2521 ccgatgctgt ccatgtagcg gaatgggccg ccgcgaaacg gagggaagcc gattccgaat
     2581 accgcgccaa cgtcaccgtc ccgcgcggat ctgatgatcc cctcttcgag acagcgcgcc
     2641 gcttcgttca gcatggccta aaccgtacgg cgctgaatgt cgtcctcgga aatctccgcg
     2701 cgcgcgcgac cgggtgcgaa tatctcgtac accgaagggt ccaccccgcc cttccttcca
     2761 gcctggtcgt agatgtagaa ccccttcttc gacttgcggc caaaacgccc cgcatcgatc
     2821 acgcttcgca gcgattcggg ttgcgagaga cgcgagccga attcgtcgaa catgatctga
     2881 cccaccttgc cggcaatgtc gagcccaacc tcgtcgacga gagttatggg ccctaccgga
     2941 aatccgaaat cgacgagcgc cctgtcgatc gtctcgatcg agccgccttc gtcgagcaac
     3001 cggccagctt cacttatgta tggagccagt atccggttca cgaagaatcc gggcgagtcg
     3061 ttcacgacga tgacagtctt gcccagcttc ttgccgtacg ctacagccgt cgcggtcacc
     3121 gaatccgacg tgcgctcggt gactatcact tcgagcaacg gcatcttgct gactggcgag
     3181 aagaagtgca tgccgagtac acgctccgga cgccgtgaca cttcggcgat ccgcgtcacc
     3241 ggaagcgtgc tcgtattcgt cgcgaagatg gcttcgggct tgacgacgga ttcgacttca
     3301 cgaagcaccg tatgcttcac atccaggtct tcgaacacgg cctcgatcac gagatcgacg
     3361 ttcgcgaagc cgctgtaatc gatcgtcccg ctgacgagcg acatcgtgtc cgagtactgc
     3421 acgcgcgtga tctgtcgttt ggtcaatcgc tccttcacga ccttgctgat ctcgctcaat
     3481 cccttgccga tgtgtgccca atcggcgtcc ttcattcgta ctaccgttcc atgctgaacg
     3541 gcgacactcg cgattcccgc gcccatgaat ccggacccga ttatcccgat cttctggacg
     3601 ctgagcgcgg ccgcggtatg tccttccgca agtccactgt ccttcttgag ctcggtcgtc
     3661 gcgaaaaaga gaaagatgag ctgcttcgag acatcggtcg cggccatctc tccaaacagt
     3721 cgtgactcct cgcgcaggcc ggctggcatt cccctgctca ttccagcttc gacggcatcg
     3781 atcgccgcga gcggcgcggg gaaattgcca tgcgtcttct tctccgcctc ctcgcgcgcc
     3841 tttctgaaca cgacgctgcg gcctaccgga tttgaatcca gcagcaaccc gctcgtgcca
     3901 cgggaccgcg acgtgcgctt gagtcgtcct tcacccaacg ctctggcgcg atcgatcgcg
     3961 atgcgacgca gaatcgccgg atgcaccatc tcgtccacga gcccgatctg caacgccttt
     4021 ttcgcgcgca cgttcctgct cgtgagaatc atgtccagcg cggcacgggc tccgatcaga
     4081 cgcggcaggc gctgagtacc gcctgcaccg ggaatcaggc caagctgcac ttcggggaat
     4141 gcgagaatcg tcttcgggtc atcggtcgca atgcgccatc tgcacgcaag cgacgcttcg
     4201 agtccaccac cgagacaggc cccgtgaatc gcggcgacga acggaactcg cgccatctcg
     4261 aagtgctcca cgagcgcctg cccgtccctg ctcagacgct cggcgtcctc cgcgtcgcgc
     4321 aactgcgtga actcctcgat gtcggcgccg gcgatgaacg tgtccggctt cccgctgatc
     4381 accaccgcac ccttcacagt ctcatcgcgg tcgatgcggt cgaacagttc gacaaatgcg
     4441 tcgcgcatgc cgcgcgtgat cttgttcacc gactcgccaa tcagatccac agtcagaatc
     4501 gcgatgccgt cttcgatttc catggtgacc ggagcctggt agcgcgcatt ggtcaccggg
     4561 gtgttcatgc gaggctccgt catacgtctc gctccagcac catcgcgaag ccaagaccac
     4621 cggctgcgca gaccgtcatc agcccgtact gcgcatcgcg ccggcccatc tcattcaaca
     4681 acgtcgtcgt tatccgcgcg cccgtcgcgc cgaaaggatg tccgagcgcg atcgatccgc
     4741 ccatcacgtt caatcgcgcg cgatcgacct cacccacggg atactcaaag ccggcgcgat
     4801 gcgcccattc cgcggactcg aagcccttga gattgcagag aacctgcgcc gcaaatgcct
     4861 cgtgcatctc gacgagatcc atgtcggcga gcgtgagccc cgctcggtac agcgcaaccg
     4921 gcgcggcaag caccgggccc atcagcagct gctcaccggg atcgagcgcg gcgtacgcgt
     4981 acgacttgat gtaaccgagc ggctcgtagc cgagcgattt tgcctttgct tcgctcatga
     5041 gcaggacgca cgcgccgcca tccgtgagcg gcgatgagtt gccagcggtg accgagccgt
     5101 aacgccggtc gaagacgggc ttcagcgcgg cgagcttttc gtatgacgtg tcttcgcgga
     5161 tgccgttgtc ggtcttgaca acaacgtcgt accgcggcgg cacaacgacc ggggagatct
     5221 cggcggtcag tcgtccgtcg gcagttccgg cggcggcgag cctgtgcgag cggagcgcga
     5281 agtgatcctg atcctcgcgc gagatgtcgt tgatcttcgc catcttctcg gcgctctcgc
     5341 ccatcgtttc gccagtggtc ggctccgcga tcgccggcgt gatgggaacc agatccctgg
     5401 gacggattcg agctagtgca ccgatgcggc ccgtgagcga tctggcgcgc gacgcggcga
     5461 ccagcgcatc ggcgaagcca cgcgaatgca ggaccggcac gttcgagagc gattcagctc
     5521 cgccagcgat gatcacgtcg ttatggccca gcgcgatctg atcggctgcg tcggttatcg
     5581 cctggttggc ggacgcacat gcgcgactca cactgaacgc ctgcacaccc ttcggcaaca
     5641 tcggcatcag cgagacctcg cgggcgatgt tcggtgccag cacgttcggg acgacggtcc
     5701 cgaatatcag cgcttcgacc tcgttgccgc tgaggttcga ccgctggagc agctccccca
     5761 cgcacaactt gccgagctcg attgccgata gtcccttgaa taccgtgccg gcgcgcgtga
     5821 acggagttct cactcccgcc acaaccgcta cgcggcgccc gtttccaaag gtcggcattg
     5881 gttgaactta ggcagcaaca gcgcgttgtg ctaccgagca gccccgtcag ccggccgcgt
     5941 cagagttcgg tgagcctcac agtccgccat cacccgcgat gctggtatcg cgcaacccgg
     6001 attcgatcac gaaccgcgtc agtgcagcgg ctgaagatgc gccgatcttg cgagcgagac
     6061 tttcgcggta cgtattcacc gtcctgatcg cgacgccgag cgtcgatgcg atctgcttgc
     6121 tcgtcaatcc ctccgccacc cgcaccgcca cctggcgctc tctgcgcgtg agcagggcca
     6181 cattctgcat ggctggacag gtgccgcggc gaaaacggca atcagcgcag cgtccgccga
     6241 gcaacgacga catcgcggcg cagaattcct gaatgccagc ctcacgcgga agacagcagt
     6301 aaccgcccgg atattgccca gccggtccgc cagattcagg atctgccgcc gactcccctg
     6361 ccgccgactc tcctgcgacc gactcctctc cgatgaccag cacacagctc tgtggcagct
     6421 cgcggtgcaa ttggtgacgg aggtcggcgc cgcgggccca cgccgttgcg ccaaaaagaa
     6481 tcgcatccgg ctgatgctca cgagccagat cgaccgctcc agccatgtcc gccgcttcgg
     6541 caaccacact gagcccgggg atcgcttcga tgagcgagcg aaggcccgcc ctgatcagtg
     6601 cgtgcttctc cacaagcaac accgatggcg gccggcttcg gtcagtcgta ctggctggcg
     6661 aatcgcgtag cagtgcagtc gtcacgtcac aaagctattg gccatacccg acaagtctac
     6721 tcggcatatg taccgatggg aacccgtgag cgcgtcgcgc tgggagattt gatgcggcac
     6781 agggaattcg ggcgtaaaaa aagccgccca tcggacggcg cgccttggct cacggttcaa
     6841 tctgcggttt cccggcagct cagttcagca cggaatccgg attctgcgaa tcatcgaagg
     6901 cgaatactcg cctcgcaccc ttccaccaac tgctcttggt atttgccaga ctctcgacct
     6961 tgactctgga tccgggagtt ggcgcatgca cataacggcc atcacctata tagatgccga
     7021 tgtgcgatat atgcctgcca tgcccaaagg tgagcagatc tccgggcttg agcgatgcga
     7081 tgtcgcgctc gatcttcttg ccgaccaggg cctgctcgcg agacgttctt gggagcttcg
     7141 ccccaaaatg ctccatcaca tactgtacga gtccgctgca atcaaagcct gaggtcggcg
     7201 actccgcgcc gcgcttgtac ctgacaccga gctgtgcacg cgacaatgcg acaatggaat
     7261 cccgcagcgc gtggatcgag ctgctcagtc gctggaatgg cttgggctcc ggtaccggcc
     7321 tgggccgcat gatggtcaca gcctgagcac cggcggacga cacaaacagc gtcccggcaa
     7381 gaaccgcgac gctcataaga tttgtgatac gaccccggcc gcggctgtta ttcatgtccc
     7441 gtcaagctaa agatcggcac ctgatgctgc aatcacgaaa agaaaccgac aatcgtgtca
     7501 gttcgatcat attagtgata tctggctgcc gggacagaaa cgtgcccctt cacgtcgcgg
     7561 tactcgattg acccgttgcc gttggcccgc acgaccagat tgccgccgac ctcacgagct
     7621 gctacctcgc ccgaggcctt ggagccgacg gtcacatcgc cgcctatatt ggacagctgg
     7681 atctcgcccg agccgtcctg cggaatggtt accgacccgg cgatattgct cagatagatg
     7741 gacccgccgc catccattat gtggacgtct ccccggacgt tggcgacaat catgtcaccg
     7801 ccgccatccg tgatatcgag cttgccgccg accgaatcga cgtcgagccc gccgtcgcca
     7861 tgtctcaatc gcatcgctcc cacattgcga aacgtggatt cgccagtgct atccgttaca
     7921 tcgagtgcga gagacgaagg cagctgaacc attaagtcga gtgccgctgc ggctccaggc
     7981 tggtttcgcg acggcggaat ggcgctcgag acgaaaatgg tatcgcccac tcggcgagtg
     8041 tcgacctgga tctcgtccag cgctgcggcg gttgcggcgt gtgctgtccc ggtgacgagc
     8101 acttccgtcg cggaactcac tccctgtact ctcaggtagc ccgcgccgac gtcgagtaca
     8161 accacggttg cgccggcaac cgggacgtgt gcggtgcgtg tcgccgagct ctccattcgg
     8221 cgcagcgtac atccacccga cagcatcacc agggcgccga tgccaaatct ggccagcagc
     8281 cgcgcatgcg tcacaatcgc gttgaacgga gagtcatggg actcgcattt gtatgtggta
     8341 attacgactc gggacgcgta agcgctgccc gccacattgt gcgggtcgcg cttacggagc
     8401 ggcgagctga agcacctttc gattgaagtc gatgttcacc cggaacgatt taagaaaatt
     8461 gagacc
//
LOCUS       DATIMD010000109         1715 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5530771, whole genome shotgun sequence.
ACCESSION   DATIMD010000109 DATIMD010000000
VERSION     DATIMD010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5530771"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..786
                     /locus_tag="VLI40_02455"
     CDS             <1..786
                     /locus_tag="VLI40_02455"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSU96057.1"
                     /translation="GGGGKSEEYLGRALGSRRAEVIVATKFGMRMDDEHRGARPEYVR
                     AAAEDSLRRLGTDYIDLYQLHTPDPDVPIADTLGAMNELVQAGKAREIGCSNFSAAQI
                     RDAEQTSKDRGIARFVSVQNEYSLLHREPEVEVLAECERVSVAFIPFFPLASGLLTGK
                     YHLGQPAPQGSRLASGPRAAQLTDDRLETVEQLRAFAQSRGHTLLELAFSWLLARPVV
                     ASVIAGATKPEQVKSNVSAAKWQLSNADLDAIDTIVPPPTPDY"
     gene            complement(780..1250)
                     /locus_tag="VLI40_02460"
     CDS             complement(780..1250)
                     /locus_tag="VLI40_02460"
                     /inference="COORDINATES: protein motif:HMM:NF019632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSU96058.1"
                     /translation="MNRQQLLGRLDSTWTDFEGSYAGLSESQLMIPRVTGEWSVRDII
                     AHVTWWEEEALKYLPVIRAGGSSPRYSVMYGGIDAFNAMMTEQRSGLSLAEVLRQHDA
                     VHAQLVDYVAATPEELIIRETRFRRRLRFDTYGHYPVHARAIRAWRARTQGIAQ"
     gene            1408..>1715
                     /locus_tag="VLI40_02465"
     CDS             1408..>1715
                     /locus_tag="VLI40_02465"
                     /inference="COORDINATES: protein motif:HMM:NF014821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ada metal-binding domain-containing protein"
                     /protein_id="HSU96059.1"
                     /translation="MTTDPVALYNALASRDPRFDGVFYVGVTSTGIYCRPVCTARTPK
                     AANCRFFDSAEAAEKASFRPCLRCRPELAPGNAPVDDAHRIANLVAYRIEEGMLDNGA
                     G"
BASE COUNT          330 a          552 c          524 g          309 t
ORIGIN      
        1 ggcggcggcg gaaagagtga ggagtatctt ggccgcgcgc tcggcagccg gcgcgccgag
       61 gtgatcgtcg ctaccaagtt cggcatgcga atggacgacg agcatcgcgg cgcgcgtccc
      121 gaatatgtgc gcgccgccgc cgaggacagc ctccggcggc tcggcaccga ttacatcgat
      181 ctgtaccagc ttcacactcc cgacccggac gtgccgatcg ctgacacact gggcgcgatg
      241 aacgagctgg tgcaggccgg gaaggcgcgc gagatcggct gctcgaattt ttccgcggca
      301 cagattcgcg atgccgagca gacgtcgaag gatcgcggca tcgcgcgctt tgtgagtgtg
      361 cagaacgagt acagccttct gcatcgcgag ccggaagtgg aagtgcttgc ggaatgtgag
      421 cgcgtaagcg tcgcgttcat accgttcttt cccctggcca gcggactgct gacgggcaag
      481 taccacctgg gccagccggc gccacaggga agccggctgg cgagcggacc gcgtgccgcc
      541 cagctgacgg acgacagact cgagaccgtc gagcagttac gcgcgttcgc gcaatcgcgc
      601 ggacatacgc ttctcgagct tgcgttctca tggctgctcg cgcggccggt agtcgcttcg
      661 gtaattgctg gcgcaacgaa gcccgaacag gtgaagtcga acgtgtccgc cgcaaagtgg
      721 cagttgagca acgccgatct ggacgcgatc gataccatcg tgccgccacc cacacccgat
      781 tactgagcga tgccctgcgt ccgtgcacgc cacgcgcgga tcgctctggc gtgcacggga
      841 tagtgaccat aggtatcaaa gcgcagccgg cgacgaaatc gagtctcccg gatgatcagc
      901 tcttccggcg tcgcagcgac gtaatcgacg agttgagcgt gcactgcatc gtgttgccgt
      961 agcacctctg cgagcgagag tccgcttcgc tgctctgtca tcatcgcgtt gaacgcgtcg
     1021 attccgccgt acatcaccga ataacgcggc gacgatccac cggcgcggat tacaggcaaa
     1081 tacttgagcg cctcctcttc ccaccaggtc acgtgcgcaa tgatgtcacg caccgaccac
     1141 tcgcccgtga cgcgtggaat catcagctgg gactccgaca acccggcgta cgacccctcg
     1201 aaatccgtcc aggtcgaatc gagccgcccc agcaactgct gtctattcat gaagcgcttc
     1261 cgttatgatg aaggatacca gccattttcg gacagccgca tgccaactca agggatcata
     1321 ctttccccct tggattaggg ccagtggccg ccatttacat gtccgaaaat ggctagtcgc
     1381 cgtatccgca tcgtgctatg atacagcatg acgacggacc ccgtggcact ctacaacgcc
     1441 ctcgcttcgc gcgatccccg cttcgatggc gtgttctacg tcggcgtgac atcgaccggg
     1501 atctattgcc gtcccgtctg cacggcaagg actcccaagg ccgccaactg tcgtttcttc
     1561 gatagcgccg aagccgcgga gaaggcgtcg ttcaggccgt gtcttcgttg ccggccggag
     1621 ctcgcgccgg gcaacgcacc ggttgacgac gcgcatcgga tcgcaaacct cgttgcgtac
     1681 cgcatcgagg aagggatgct cgacaacggc gccgg
//
LOCUS       DATIMD010000110         1813 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5242118, whole genome shotgun sequence.
ACCESSION   DATIMD010000110 DATIMD010000000
VERSION     DATIMD010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1813
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5242118"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..407)
                     /locus_tag="VLI40_02470"
     CDS             complement(<1..407)
                     /locus_tag="VLI40_02470"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSU96060.1"
                     /translation="MTSPTLDDARATLSKAFGYPAFRAGQELAVESVLQGRDTLVILP
                     TGGGKSLCYQVPALLLPGLTVVVSPLISLMKDQVDALEAKGIAAAFVNSTLTNGQVSD
                     RMARVARGEIRMLYMAPERFDAGSTAEQLRRAGV"
     gene            complement(517..>1813)
                     /locus_tag="VLI40_02475"
     CDS             complement(517..>1813)
                     /locus_tag="VLI40_02475"
                     /inference="COORDINATES: protein motif:HMM:NF013316.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3656 domain-containing protein"
                     /protein_id="HSU96061.1"
                     /translation="TLLARARASFDTVELAPARKRPIDVAAFGSVGSPLKLVFKSDVG
                     DVVVRSDIALAAASKRALDVPQLREQLGRLGETGFVLREVDANGLAAGQFIPVSVLNH
                     MRQSAIADLEQRAEWEDASRRGERTERISAAIAEVAVNELSHSDRVTLSAHVYDLADA
                     RAAAAAGATEIVLDPFLRHPTPPVSRVQALATELSGVGVTLRIRTPSIVRPEDRAVVD
                     KWLALDLPIVSGHVGLAVELARRGRDVVADYAVNCFNQHTAAHLFANGIRRIVPSIEL
                     TVDELRDVVAPWGGNGFDVLVYGRPEGMTIEHCVLSAAFDREPTTCRDLCVQKHKNVA
                     LTDPAGYTFAVATDSACRNRLLHSRPIEASEYIPRLWSLGVRSFNAVFNVPGDPVAEV
                     IGGYRELVDSLASGETVRSSRVRSVVGSAFTRGHFARAV"
BASE COUNT          347 a          587 c          570 g          309 t
ORIGIN      
        1 actccggcac gacgcaactg ctcggcggtg ctgccagcgt cgaagcgctc gggtgccatg
       61 tacaacattc tgatctcgcc gcgcgcgaca cgggccatgc ggtccgagac ctgcccgttg
      121 gtcagcgtgc tgttgacgaa ggccgccgcg attcccttgg cctcgagagc atcgacctga
      181 tccttcatca gcgagattag tggggacact acaactgtga ggccgggaag aagcagcgcc
      241 ggtacctgat agcacagcga ttttccaccg cctgtcggca gaatcacgag cgtgtcgcgt
      301 ccctgcaata cggactccac agcgagctcc tggccggcgc gaaacgccgg gtagccaaaa
      361 gccttgctga gagtcgcgcg cgcgtcatcc agagtcgggg atgtcatgtc tgaatgattc
      421 agcgaaagag ccggcgcagt cgaatcgatt ccgctttcat cgaagccatc gcaatcactg
      481 acctgccgaa cggcgtgtcc aaggatactg ggccgatcag accgctcgcg cgaagtggcc
      541 acgcgtgaac gcggagccaa ctactgagcg aactctgctg cttcgcactg tctcgccgga
      601 tgcgagcgaa tcgaccagct cgcggtagcc accgatcacc tctgcgacag gatcgccggg
      661 gacgttgaac accgcgttga acgagcggac gcccagactc cagagtcgcg gaatgtattc
      721 cgaggcttcg atcggtcgtg agtgcagcag gcggtttcgg catgcactat cggttgcgac
      781 cgcgaaggtg tagccggcgg gatccgtaag tgcgacgttc ttgtgcttct gcacgcacag
      841 atcgcggcac gtcgtcggct cgcgatcgaa tgcggcggac agcacacagt gttcgatagt
      901 catgccttcg ggccggccgt acacgagtac gtcgaaacca ttgccgcccc acggcgcaac
      961 gacgtcgcga agctcgtcaa cggtcaactc gatggatgga acgatgcgcc gaataccatt
     1021 tgcgaacagg tgcgccgcgg tatgctgatt gaagcagttc accgcgtaat ccgcgacgac
     1081 gtcgcgtccc cggcgcgcaa gctcgactgc gagtcccaca tgcccggaca cgatcggcag
     1141 atccagagcg agccacttgt ccaccaccgc gcgatcttcc ggccgaacga tgctaggcgt
     1201 gcgaatccgc agcgtaacgc caactcctga aagttcagta gccagcgcct ggacgcgtga
     1261 aacgggcgga gtgggatgac gcaggaatgg atcgagcacg atctcggttg cgccagccgc
     1321 ggcggcggcg cgcgcatcgg cgaggtcgta cacgtgcgct gacagggtga ccctgtcgct
     1381 gtgagaaagc tcgttcacag cgacttccgc aatcgccgcc gagattcgct cggtacgctc
     1441 gccacgtctc gacgcgtcct cccattccgc acgctgctcc aggtcggcga tggcgctctg
     1501 gcgcatgtgg ttcagaacgc tcacgggaat gaactggccc gctgcgagtc cgttcgcgtc
     1561 cacctcgcgc agaacgaagc cggtctctcc gagccggccc agctgttcac gtagctgcgg
     1621 gacgtcgagc gcgcgcttcg aggcggcggc cagtgcaatg tcgctgcgta cgaccacatc
     1681 tcccacgtcc gacttgaaca cgagcttgag cggcgatccc acgctgccga acgcagcgac
     1741 gtcgatcggc cgtttgcgcg ccggtgccag ctcgaccgtg tcgaagctcg cgcgcgcacg
     1801 tgcgagcagc gtc
//
LOCUS       DATIMD010000111         4145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_333507, whole genome shotgun sequence.
ACCESSION   DATIMD010000111 DATIMD010000000
VERSION     DATIMD010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4145
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333507"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..512)
                     /locus_tag="VLI40_02480"
     CDS             complement(<1..512)
                     /locus_tag="VLI40_02480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96062.1"
                     /translation="MTAPIYSDVIASLLAHAAGDERSSVLALEALVRCADDTGAATLN
                     DIAIGYRDEYLRTLRDEGKDAQREAGRLSLDEVRAYLTTWVLPRLATDKVVILPPGDV
                     GDYTKVRLSDSLWSDIAPLRAQVADMLRQTGEFPRPATGHIALEDRSPGRSTLDAEGL
                     VKIYRRRKVV"
     gene            complement(509..1894)
                     /locus_tag="VLI40_02485"
     CDS             complement(509..1894)
                     /locus_tag="VLI40_02485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96063.1"
                     /translation="MNRRLASVVALLSALSLLCVAQSGVAQRVGPTPGSKCIIEIEGS
                     TAGTTRFNSVKLPSGERNTYVGGGSIARCQGQDVTLISDSTEYYGDQRLMYLIGNVHY
                     SDPRAKVDADHMTYWMEEEHIRAEGNVFAVMASGSTMRGPVADYYRAVAPIRTEAILV
                     STGRPKLQVVQIDTLTHKPSDTVDVVADRITSVADSLVYAGGDVRITRPQLFATGDSA
                     FMDQGSGTARLMKKPTVEARRSRPFTLTGGVIDVFSKNRLVNRVVATPNGHATSQDLQ
                     LYADSVDLRVRNNELERAMAWGKSRAHATSPDRDILADSIDALLPNQRIHQIISVGKA
                     YATSIPDTATMKTAERDWIRGDTLIATFDSVARMDSAHTPPVKTITARTNSRAYYHVK
                     NDKFKDRPGVNYVTGKDIDIKFLNGGIDTVRVREKASGVYVEAVDTTVVAKPSTPKPL
                     KPPAPRRGGIH"
     gene            complement(1894..2430)
                     /gene="lptC"
                     /locus_tag="VLI40_02490"
     CDS             complement(1894..2430)
                     /gene="lptC"
                     /locus_tag="VLI40_02490"
                     /inference="COORDINATES: protein motif:HMM:TIGR04409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HSU96064.1"
                     /translation="MTATALALCASGCKSNKTTPPVSTRSALADSAGQVMYGARFNLT
                     DQGVMHAQLVADTAYFFDDNTRVEMMHVNATFFTTVGVKSAVLTARRGTYHTNTGQMV
                     ARGNVVVNSEDGRHLTSEELKYDQSRNEISSDSAFVITEPDRRLEGVGFRSDPNLQNV
                     HVLKVLSGTGGAVVIPTH"
     gene            complement(2448..3428)
                     /locus_tag="VLI40_02495"
     CDS             complement(2448..3428)
                     /locus_tag="VLI40_02495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HSU96065.1"
                     /translation="MGASTSLKADALARGRRVLSLEAAAISEAESRLGDEFVHAVEMI
                     ATARGRVIVCGVGKSGLIGRKIAATLTSTGTPAVFLHAADSIHGDLGIVGESDVAILI
                     SKSGESDELLPLLDHLKRLGVQTIAITGDRESTLASHADETLDAWVREEACLHGLVPT
                     TSTTVALALGDALAVALLEEKGFGADDFARIHPGGALGRKLLTRVRDVMLTDSLPTLP
                     TNATVREAIVELAERRGIVMMIDDAGRVSGIMTAGDLTRLMEHEADVLRISVSDVMNR
                     SPRVADPEELGSAAVHRMEEHGIMAMPVVTGDGSLVGVVHLHDLMRAGAV"
     gene            complement(3407..>4145)
                     /gene="kdsA"
                     /locus_tag="VLI40_02500"
     CDS             complement(3407..>4145)
                     /gene="kdsA"
                     /locus_tag="VLI40_02500"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HSU96066.1"
                     /translation="ALNLEVAEALLRIEERVPGGVIYKASFDKANRSNPGAARGPGLD
                     EGIAALGRVRASTGLPVLTDVHLPEQCAAVARQVDVLQIPAFLCRQTDLLHAAGATGR
                     PVNVKKGQWMHPEGMRGALDKVREAGGDEVAVTERGTFFGYGDLVVDMRAFPRLKTAC
                     EAPVIFDATHSVQRPGQGVGGSSGGAREFIPTLALAAVAAGADGVFIETHPTPDSAPS
                     DGPNMLPLTELPDLVDRMVDLWARVRR"
BASE COUNT          722 a         1336 c         1282 g          805 t
ORIGIN      
        1 ttgacgacct tgcggcgccg atagatcttc acgagtccct cggcatcgag cgtgcttctg
       61 ccggggctgc ggtcctcgag cgcgatgtga ccggtcgccg gtcgcgggaa ctcgccagtc
      121 tgccgcagca tgtcggcgac ctgtgcccgg agcggtgcga tatcactcca gagactgtcc
      181 gagagcctga ccttggtgta gtcgccgacg tcgccaggcg gaagtatgac caccttgtcg
      241 gtcgccagcc gcggcaggac ccacgtggtg agataggcgc ggacctcgtc gaggctcagc
      301 cgccctgctt cacgctgcgc gtccttgcct tcatcccgca gcgttcggag atactcgtcg
      361 cggtaaccga tcgcgatgtc attgagcgtt gccgcgccgg tatcgtcggc gcatcgcacg
      421 agcgcctcga gagcgagcac tgacgagcgt tcgtcgccgg cggcatgtgc aagcagcgac
      481 gcgatcacgt cggagtagat cggcgcggtc aatggatacc tcctctgcgc ggcgccggcg
      541 gcttgagcgg cttgggcgtg gagggcttcg ctaccacggt cgtatcgacc gcttcgacgt
      601 acacgccgct ggccttttcg cgaacccgta cggtgtcgat gccgccgttg aggaacttga
      661 tgtcgatatc cttgccggtg acgtagttga ctcccgggcg atccttgaac ttgtcgttct
      721 tgacgtgata atacgcacgc gagttggtgc gagctgttat cgtcttgacc ggcggcgtgt
      781 gcgcgctgtc catgcgcgca acactgtcga aggtcgcgat gagcgtgtcg ccgcgaatcc
      841 agtcacgctc agcggtcttc atcgttgcgg tatcgggaat gctcgtcgca tacgccttgc
      901 cgacggatat gatctgatga attcgctgat tcggaagtaa tgcatcgatc gaatcggcga
      961 gaatgtcacg atcgggcgag gtcgcgtgcg ctcgcgactt tccccacgcc atggcgcgct
     1021 cgagctcgtt gttgcgaacg cggaggtcga ccgagtcggc gtacagctgt aggtcctggc
     1081 tcgtggcatg accgttgggc gttgcgacca ccctgttcac cagccggttt tttgagaaga
     1141 catcgatcac accacccgta agagtgaacg gtcggctgcg gcgagcttcg acagttggct
     1201 tcttcatgag gcgtgcggtg ccggagccct gatccatgaa cgccgagtcg ccggtcgcaa
     1261 acaactgcgg ccgcgtgatg cgcacatcac cgccggcgta gacgaggctg tctgcgacgc
     1321 tcgtgatgcg atccgcgacg acgtccaccg tgtcgctggg cttgtgcgtc agcgtgtcga
     1381 tctgaacgac ctggagcttt ggacgcccgg tggaaacgag aatcgcttcg gtgcggatcg
     1441 gtgccaccgc acgatagtaa tccgcgactg gaccccgcat cgtacttccg ctcgccatga
     1501 ctgcgaacac attcccttcc gcgcggatgt gctcctcttc catccagtag gtcatgtgat
     1561 cggcgtcgac cttggcgcgc gggtcgctgt aatgaacgtt gccgatgaga tacatcaggc
     1621 gctgatcgcc gtagtattcc gtgctgtcgg aaatcagcgt gacatcctgt ccctggcacc
     1681 gcgcgatcga tccgccaccc acatatgtgt tacgttcgcc gcttggcagc ttgacgctgt
     1741 tgaatcgggt ggtacctgcc gtcgatccct cgatctcgat gatgcacttg ctgcctggcg
     1801 tcggcccgac acgctgcgcg actccgctct gtgcgacgca cagtaggctg agcgccgaga
     1861 gcagcgcgac gacggatgcc aggcgtcggt tcatcagtga gtggggatta ccaccgcacc
     1921 gccggttcca gacagaacct tgagcacgtg aacgttctgg agattgggat ccgagcggaa
     1981 tccaacgcct tccagccgcc gatccggttc cgtgatcacg aatgcgctat cgctcgaaat
     2041 ctcgttcctg ctctgatcgt atttcagctc ctctgacgtc agatggcgac cgtcttcgga
     2101 attcaccacc acgtttccgc gcgccaccat ctgtccggta ttggtatgat aggttccgcg
     2161 gcgcgccgtc agcacggcac tcttcacacc gacggtcgtg aagaaggtcg cgttcacgtg
     2221 catcatctcg acgcgcgtgt tgtcgtcgaa gaagtacgcc gtatcagcaa cgagctgagc
     2281 gtgcatgacg ccctgatcgg tgagattgaa gcgtgcacca tacatcacct ggccagcgga
     2341 atcggcgagc gcggagcgcg tggaaaccgg tggcgtcgtc ttgttgctct tgcaaccgga
     2401 cgcgcatagc gccagcgccg tcgctgtcac gacgtgcata cgcagcgtca aactgcaccc
     2461 gcacgcatga ggtcatgcag gtgcaccaca ccgacaagcg atccatcccc ggtgacgaca
     2521 ggcatcgcca tgatgccgtg ctcttccatg cgatgaacgg cggcactccc cagctcttcc
     2581 gggtcggcga ccctgggaga ccggttcatc acgtcggaga cactgatgcg gagaacgtct
     2641 gcttcgtgct ccatcagtcg cgtcagatcg ccggctgtca ttatgccgct cacgcgccca
     2701 gcgtcgtcga tcatcatgac gatgcctctc cgctcggcga gctcgactat cgcctcgcgc
     2761 accgtagcgt tcgtgggaag cgtcggcagc gagtcggtca gcatcacgtc gcgcacccgg
     2821 gtgagtagct tgcggccgag tgcgccgccg ggatgaatgc gcgcgaaatc atcggctccg
     2881 aatccctttt cttcaagcag ggcaaccgcg agcgcgtcgc caagcgcaag cgcgactgtg
     2941 gtgctcgtcg tcgggacgag gccgtgcagg caggcttcct cgcgaaccca cgcatcgagc
     3001 gtttcgtcgg cgtgcgatgc cagtgtcgat tcacggtcac cggtgatcgc aatcgtctgg
     3061 acgccgagtc gtttcagatg gtccagcaac ggcagcagct cgtcggactc accgctcttg
     3121 gaaatgagaa tcgcgacatc cgactcgccg actattccga gatcgccatg gatgctgtcg
     3181 gccgcgtgca ggaagaccgc gggcgttccc gtcgaagtga gcgtcgcggc gatctttctt
     3241 ccgatcaggc ccgacttgcc gactccgcaa acgatcacgc ggccacgcgc ggtagcgatc
     3301 atctcgaccg catgcacgaa ctcgtcgcca aggcgcgact cggcttcgga gatcgccgcg
     3361 gcctcgagac tgagaacgcg acggccacgt gccagagcgt ctgccttcaa cgacgtactc
     3421 gcgcccataa atccaccatg cggtccacga gatccggcaa ttccgtgagc ggcagcatgt
     3481 tcggcccgtc actcggcgcg ctgtccggcg ttggatgcgt ctctatgaaa acaccgtcgg
     3541 cgccggcggc taccgcggcg agcgcgagcg tcggaatgaa ctcgcgcgcg ccaccgctgg
     3601 aaccgccgac gccctgacct ggacgttgca cactgtgcgt cgcgtcaaag atcaccggcg
     3661 cttcgcacgc tgtcttgagg cgcgggaagg cgcgcatgtc gacgaccaga tcgccgtaac
     3721 cgaagaaggt tccgcgctct gtaaccgcga cttcgtcacc gccagcctcg cgaaccttgt
     3781 ccagtgcacc gcgcattcct tccggatgca tccactgacc cttcttcacg tttacgggac
     3841 ggcccgtcgc accagccgcg tgaaggagat ccgtctgccg acagagaaag gctgggatct
     3901 gtaaaacatc cacctgccgt gcgactgccg cacactgctc cggcaggtgc acatccgtaa
     3961 gcaccggaag acccgttgat gcgcgcacgc gaccgagtgc cgcgattccc tcgtcgagcc
     4021 ccggaccgcg cgcggcgccg gggttggagc ggttcgcctt gtcgaagctg gccttgtaga
     4081 tgacaccgcc cggaacgcgc tcctcgattc ggagaagcgc ctctgcgacc tcgaggttca
     4141 gcgca
//
LOCUS       DATIMD010000112         1946 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1488057, whole genome shotgun sequence.
ACCESSION   DATIMD010000112 DATIMD010000000
VERSION     DATIMD010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1488057"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..275
                     /locus_tag="VLI40_02505"
     CDS             <1..275
                     /locus_tag="VLI40_02505"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HSU96067.1"
                     /translation="SVVLAEVAWVLRGAYKFDRATTAAALRRLIAIEGVHVEDEATTR
                     LALAAFAAGSADFADYFILESARRDGALPLHTFDERLSRADGAKLV"
     gene            867..1277
                     /locus_tag="VLI40_02510"
     CDS             867..1277
                     /locus_tag="VLI40_02510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96068.1"
                     /translation="MQNTRPKQIQGHFDHAQNILHLWFPQPVVLRDADTVTAFFDEVL
                     KDWIAPTPGRFYLLVNYQNLHIAAQVAEAYSAGISRFQNRLHGTYRYGLPGDFTGVAV
                     SLGNMKLQAPVNLFDSESDARAAIDRAKKSRQNT"
     gene            complement(1325..>1946)
                     /locus_tag="VLI40_02515"
     CDS             complement(1325..>1946)
                     /locus_tag="VLI40_02515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96069.1"
                     /translation="GTLDAAWTSMHALKIISASAWLWAASLSAGCGANGAGDQEPVSN
                     DELAVSLGGTSHWDPVNCNASRIQCNGMHCCGTGEAMTGAYLDANDFQCRPVTGATES
                     SCGVFTTTRTIEGVTLRACPSGFYMKGLHVGNNTITCCNYPAFNPSRSFQLDGHGEAP
                     TQGTAPRIKSPSPFAGVCSDTSAHVCPAGSVMEGIHVDGNYFLCGT"
BASE COUNT          366 a          629 c          599 g          352 t
ORIGIN      
        1 cgagcgtcgt cctggccgaa gtcgcctggg tgctccgtgg cgcctacaag ttcgatcgcg
       61 caacgaccgc cgccgcactc cgccggttga ttgccattga aggagtacac gtggaagacg
      121 aagcaacgac acgcttggca cttgcggcgt tcgcagccgg ctccgcggat ttcgccgact
      181 acttcatctt ggagtccgcg cggcgcgacg gcgcgctccc ccttcacacc ttcgacgagc
      241 gcttgagccg cgccgacggc gccaagctcg tctgactgat cccgcgccgc cgcagctcct
      301 cggcaatctg cgccactacg tcccaccggc ccacctccgc ggccaaaacg agcgccctcg
      361 ccaacgccgt ttggaccacg ttcgacagct cgtacggctc gggcgattcc gtcacatcgc
      421 catggtcgat cgggcacttg gacgcacgat ccggcacgtc agccgaaccg gctcgaatgc
      481 cactggctcg cgtcgatagc gatcgcaaac tccctgctcc cggattggga agcacgagca
      541 gaggcaggcg atctggcgcg cgggctggtt gcgctcgcaa tgggcggcgg gcgctctggg
      601 ctctattaaa gctcgaacga taacttcaca catccattga cttggctcgg catcgcagcc
      661 gtgacgtgcg gtctcgtcgc agcgatgtgt gcgaccgcga tcgtctggac gatccatcgc
      721 aacctggaag tctggtcgcc gcggcgatac gcgagcgtac gggtgagcag cgtcagtttc
      781 agccaccgtc gtcatgagcg gaacggcctg cacaccctgc ggtatactcg atgcgcagca
      841 cgatgggtca ccgatgaggt ccgagcatgc agaatacgcg tcctaagcag attcaggggc
      901 acttcgatca cgcgcagaac atcctccatc tctggtttcc ccagccggtg gtcttgcgcg
      961 acgcggacac ggtgaccgcg ttcttcgacg aagtcctcaa agattggatt gcgccgacac
     1021 ccggtcgttt ctacctcctg gtgaattatc aaaacctgca catcgcggcg caggtggcgg
     1081 aagcgtactc ggcgggcatc agccgttttc aaaataggct gcatggaacc tatcgctacg
     1141 gccttccagg cgatttcacg ggtgtggccg tgagccttgg gaacatgaaa cttcaggccc
     1201 cggtcaacct gttcgatagc gaatcggacg cacgggccgc catcgatcgc gctaaaaaga
     1261 gccggcagaa cacgtaagcg tgcgcacgga cgactccagc ggtgacgcca ggagccggcg
     1321 ctgcctacgt accgcagagg aagtagttcc cgtcgacgtg aatgccttcc atcacgctgc
     1381 cggcaggaca gacgtgggcg ctcgtatccg agcagacgcc cgcgaatggc gaaggcgatt
     1441 tgatgcgagg agcagtgccc tgggtcggcg cttcaccatg accgtcgagt tggaagctcc
     1501 tcgacgggtt gaaagccgga taattgcagc acgtgatggt gttgttaccc acgtgcaggc
     1561 ccttcatgta gaagccgctc ggacacgcgc gaagggtgac gccctcgatc gtgcgcgtcg
     1621 tggtgaacac tccacaactc gactcggtgg caccggtgac aggccggcat tggaagtcgt
     1681 tggcgtctag gtaggcgccc gtcatcgcct cgccggtgcc gcagcaatgc atcccgttgc
     1741 actgaatcct actggcgttg caattcacag ggtcccagtg cgaagtgccg ccgagactga
     1801 ccgccaactc gtcattgctt acgggctcct gatcacccgc cccgttggcg ccgcagccgg
     1861 cggaaagact cgctgcccag agccaggctg aggccgagat gattttcaat gcgtgcatgg
     1921 aggtccacgc tgcatcgagc gtgccg
//
LOCUS       DATIMD010000113         4153 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_623881, whole genome shotgun sequence.
ACCESSION   DATIMD010000113 DATIMD010000000
VERSION     DATIMD010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4153
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_623881"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VLI40_02520"
     CDS             <1..507
                     /locus_tag="VLI40_02520"
                     /inference="COORDINATES: protein motif:HMM:NF013918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric reductase-like transmembrane
                     domain-containing protein"
                     /protein_id="HSU96070.1"
                     /translation="DWPHRHINTLKLHNWTGYLALAASAIHPLIILLSSTARFRLVDI
                     VYPVNAPKQPWVNTLGAGALYLLVFVVVTSYFRFDIGRLWWKRMHYVTYALFVLYAFH
                     AILTDPTLKDAPLDPLDAEKIYVELCVLVVVVATVLRARFALRQPAPRAHRPKQRRPA
                     RKRVLARG"
     gene            complement(708..3290)
                     /locus_tag="VLI40_02525"
     CDS             complement(708..3290)
                     /locus_tag="VLI40_02525"
                     /inference="COORDINATES: protein motif:HMM:NF027637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HSU96071.1"
                     /translation="MSTHLTPTGMTNRLIITLGSAVLAVGCAHNATPPAPAPSPVRAG
                     ANASTNAASSAASAQRDSTPRVTPGVAPRPRPYNRVITSEAKTRRGLFVVHRVGDKLY
                     FEIPRDELGRDMLLVGRYARAAAENPNSPDGGFGDYGGDEFGERTLRWDRDGDRIILR
                     SPSFAITADTSLAVYRAVQNSNYSPIVAIFNVEAYGRDSAAVIDVTRLYTTAVPEFAA
                     IRGTIDERRSFVESAIPFPDNIEIEATQTGIRAPAPTRPGTPAAPAAPRELQTAQSVL
                     AHWSLVRLPDIPMIPRRFDERVGFFSVRNVNFGVEQRAAQRQFITRYRLVKKDPSAAL
                     SEPVKPIIYYVDPATPDQWKPWIRKAITDWQPAFEAAGFKNAIIAMDPPANDPDWSPD
                     DIRHTMIRWLPSTVENAVGPHVSDPRTGEILNGSVRIFQNVLNLQRDWYFTQAAQVDP
                     RARSFPMPDSLMGRLLEFVVAHEIGHTIGLRHDQLGSSTYPADSVRSATWVHKMGHSP
                     SIMDYSRFNYVAQPEDHIPLDDIIPRIGPYDKYAIMWGYKPIPSATSSDAERPTLDQW
                     ARMQDSIPWYRFSENNEAGGFGTLTEAVGDADPVKSTGYGFKNLQRVVGYINGAATEP
                     GEDNSDLREIYDRTVGQWATEASHVVTVVGGAEVQYKSGSQTGAVYTPLSRARQADAV
                     RFLNDNVFRTPTFLIRPDIARRIEADGMIRRIDNAQARVLGSLLDDQRMNRLIGDEAL
                     ATNKRDAYTLANMLDDMRHGIWSELSSSHVAIDPYRRALQDTYLTQIDRKLNAPAATA
                     VRVGFGPPQAPLSEDAKSALRGELVSLTADIKRASGNAADRETQLHLAGAEHRIDEIL
                     NPKK"
     gene            3632..>4153
                     /locus_tag="VLI40_02530"
     CDS             3632..>4153
                     /locus_tag="VLI40_02530"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HSU96072.1"
                     /translation="MLLFIAGTLAVPAVLVAQQTGGTITGSVVDASSHAPIPSVRIQI
                     VGSQRATLGDAEGKFRINVLKPGQYQVRAMRIGFAASTQTITVAEGSPANVVFTLSPV
                     AISLEEVVTTATGETQRKKEQGTAVAVVQPKPVELATAQSASQLLTGKVAGVDVASTG
                     GTVGSGSRIRIRGA"
BASE COUNT          733 a         1260 c         1304 g          856 t
ORIGIN      
        1 gactggccgc accggcatat caacacgctc aagctgcaca actggaccgg ttatctggcg
       61 ctggctgcga gcgcgattca tccgctgata atcctgctgt cgtccacggc caggttccgg
      121 ctggtggaca ttgtctatcc cgtgaacgcg ccgaaacagc cgtgggtcaa tacgcttggt
      181 gcaggggcgc tgtatctgct cgtgttcgtg gtggtcacat cgtatttccg gttcgacatc
      241 ggccggttat ggtggaagcg gatgcattac gtgacgtacg cgctgttcgt gctgtacgcg
      301 ttccatgcga ttctgacaga tcccacgctg aaggatgcac cactcgatcc gctggacgcg
      361 gagaagatat acgtggagct gtgcgtgctc gtggttgtgg tcgcgacagt gctgcgtgcg
      421 aggttcgcgc tgcggcaacc agcgccgcgt gctcacagac ccaagcagcg gcgtccggcg
      481 cgaaagaggg tgttggccag agggtagaag gggcttccgg cgggatggac tcgtcattcc
      541 cgcgatggaa cgtcattccc gcgaaagcgg gaatccatgt tatcgatctt tgagtgcgat
      601 gctagcgcaa acctgatcgg caacagatgg attcccgctt tcgcgggaat gacgactctc
      661 tgaccccgct ttcgcgggaa cgacgaccct acatctacaa ccctgtacta cttcttcggg
      721 ttcaatatct cgtcgatgcg atgttccgcg cccgcgagat gaagttgcgt ctccctatcc
      781 gctgcatttc cacttgcacg cttgatgtca gcggtaagcg atacgagctc gccgcgaagt
      841 gccgatttgg cgtcttctga caacggtgcc tgtggcggac cgaagcccac gcgcaccgcg
      901 gtagctgcag gcgcgttcaa cttgcgatcg atctgcgtaa gatacgtatc ctgcagcgct
      961 cgccggtacg gatcgatcgc gacgtgcgac gacgacagct cgctccatat cccgtgtcgc
     1021 atgtcatcca gcatgttcgc gagcgtatat gcatcacgct tgttggtggc gagtgcctcg
     1081 tcgccgatca gccggttcat tctctgatcg tcgaggagac tgcccagaac gcgggcctgc
     1141 gcgttgtcga tgcgtctgat cataccgtcg gcctcgatcc tgcgcgcgat gtcggggcga
     1201 atgagaaacg tcggcgtcct gaacacgttg tcgttgagga accgaaccgc gtcagcctgt
     1261 cgagcgcgtg acaacggcgt atagaccgcg ccggtctggc tgccggactt gtactgtacc
     1321 tcggcgccgc ccacaaccgt aaccacgtga ctggcttcgg ttgcccactg accgacggtg
     1381 cggtcgtata tctcgcgcag gtcgctgttg tcctcacctg gctcggtcgc agcaccgttt
     1441 atgtaaccga cgacgcgctg caggttcttg aacccgtaac ctgtggactt gaccggatcc
     1501 gcatcaccga ctgcctcggt gagcgtgccg aatccaccgg cttcgttgtt ctcggagaac
     1561 cggtaccatg gaatactgtc ctgcatcctg gcccactgat ccagcgtcgg gcgctcggcg
     1621 tcgctgctcg tcgcggatgg aatcggcttg taaccccaca tgatcgcgta cttgtcgtac
     1681 gggccgatgc gggggatgat atcgtccagc ggaatatggt cttccggctg cgcaacataa
     1741 ttgaagcgcg agtaatccat gatcgacggc gagtgcccca tcttgtgcac ccacgtcgca
     1801 ctccggacgc tgtcggccgg atacgtcgag cttccgagct gatcgtgccg caggccgatc
     1861 gtgtgaccga tctcgtgcgc gacgacgaac tcgagcaatc tgcccatcag cgagtcgggc
     1921 atcgggaagc tgcgcgcgcg cgggtcgacc tgcgcggcct gcgtgaagta ccagtcgcgc
     1981 tgaaggttga gcacgttctg gaagatgcgc accgagccgt tcagaatctc gccggtgcgt
     2041 gggtcgctga cgtgtggtcc aacggcattc tcgaccgtgg acggcagcca gcggatcatg
     2101 gtgtggcgta tgtcgtccgg cgaccagtcg ggatcattgg ccggcggatc cattgcgatg
     2161 atcgcgttct tgaagccagc cgcttcgaat gcgggctgcc agtcggtgat cgctttgcga
     2221 atccacggct tccactgatc cggcgtcgcg ggatcgacat aatagatgat cggcttgaca
     2281 ggctccgaca gcgccgcgct cggatccttc ttgacgagcc gatagcgtgt tatgaactgg
     2341 cgctgcgccg cgcgctgctc gacgccgaag ttcacattgc gtaccgagaa gaatccgacg
     2401 cgctcgtcga accggcgcgg aatcatcgga atgtcgggca ggcgcaccag gctccagtgt
     2461 gcaagaacgc tctgcgcggt ctgcaattcg cgtggtgccg ccggtgcagc cggcgttccc
     2521 ggccgcgtcg gcgctggtgc gcgaatcccg gtctgcgtag cttcgatctc tatgttgtcg
     2581 ggaaatggaa tcgcgctctc cacgaatgac cggcgctcgt cgatcgtacc gcgaatcgcg
     2641 gcgaattcag gcaccgccgt cgtgtagagc cgagtgacgt cgatgactgc cgcgctgtcg
     2701 cggccatagg cttcgacatt gaagatcgcg acgatcggcg agtagttgga attctgaact
     2761 gcgcggtaga ccgcgagcga tgtgtcggca gttatcgcga acgacggcga acggagtatt
     2821 atgcgatccc catcgcggtc ccatcgaagt gtacgctctc cgaattcatc gccgccgtag
     2881 tcgccgaacc cgccgtccgg tgaattcggg ttctcggcgg ctgcgcgcgc atatcgaccg
     2941 acgagcaaca tgtcgcggcc gagctcgtcg cgcggtatct cgaagtagag cttgtcgccc
     3001 acacggtgta cgacgaacag gccacgccgt gttttcgctt cggatgttat gacacgattg
     3061 taggggcgcg gtctcggcgc gacgcctggt gtgacgcggg gcgtcgaatc acgctgcgca
     3121 cttgctgcag aacttgctgc gttcgtactt gcatttgcgc cggctctcac cggtgagggt
     3181 gcgggcgcgg gcggcgttgc attgtgcgcg catccgacgg cgagcactgc agagcctagg
     3241 gtgatgatca gcctgttggt cattccagtc ggtgtgagat gtgtagacac gaagatcggt
     3301 cgaaaacata cgcattctgc cggctgttcg ttcgccgatg cgctggccaa gtttcactga
     3361 cagttcaccc caccagacgt accgttcacc gaaaactctt ctggcgtgag cggttctctg
     3421 cgcgtatttt agctccacca ttgagcgggt ctgctaccgg cgcatttcac gcaccttgtg
     3481 acatgctttt gggaccagcc gcatcaccgg atgagcacgc ccagcgctca tccggccgcg
     3541 tctggcgtcc ccatcgagcc ggagcccgcc tagcaactca ccctcagcta ggagctcgca
     3601 cgacgctatg acgattcgtt atctcaaccg agtgctactt tttatcgccg ggacgctcgc
     3661 cgttcccgcg gtactcgtag cccaacagac tggcggtacg atcaccggaa gtgtggtgga
     3721 cgcatcgtcg cacgcgccaa ttccgtcggt gcggatccag attgtcggct cgcaacgcgc
     3781 gacgctcggc gacgccgaag gcaagttccg aatcaacgtt ctcaagccgg gtcagtatca
     3841 ggtgcgcgcc atgcgaatcg gcttcgcagc ctcgacccag accataaccg tggcggaggg
     3901 cagtccggcg aatgtcgtgt tcacgctttc gccggtcgcg atcagcctcg aggaggttgt
     3961 aacgaccgcg actggcgaga cgcagcgcaa gaaggagcag ggcactgcag ttgccgtcgt
     4021 tcagccgaag ccggtagaac tggctacggc gcagtctgcg agtcagctcc tgacgggcaa
     4081 ggtcgccgga gtcgacgtcg catccacggg aggcacggtg ggctccggtt cgcgcatccg
     4141 tatccggggc gcg
//
LOCUS       DATIMD010000114         5505 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_45505, whole genome shotgun sequence.
ACCESSION   DATIMD010000114 DATIMD010000000
VERSION     DATIMD010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5505
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45505"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VLI40_02535"
     CDS             <1..217
                     /locus_tag="VLI40_02535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96073.1"
                     /translation="LYGLPLDYYNHVVDEIGGVTQGEVQRVAQKYIDPSHLTVLIVGD
                     RKTIEGPIKALNIGPIVFRDANGNPVQ"
     gene            241..789
                     /locus_tag="VLI40_02540"
     CDS             241..789
                     /locus_tag="VLI40_02540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96074.1"
                     /translation="MPRRTTAGIAVTALLVAAACSPGKQADKSRTPAQSASEAAGAAA
                     ASRDSVAIRTTDGAIQLGLARDTVYMGLTDSVLTLARKDMARDTEETRNAIAGTIERF
                     VKKSVSSALQTRLKYPLADLDSVTYRDGAIKFAYRDKRRMGFEDVSQNGHKALQSFTP
                     DDAQHFVSVVNSAIRESRGSFQ"
     gene            786..1328
                     /locus_tag="VLI40_02545"
     CDS             786..1328
                     /locus_tag="VLI40_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal-dependent hydrolase"
                     /protein_id="HSU96075.1"
                     /translation="MTSMIQDMRYPVGRFKYDGDSSREAIDRSIAEIAALPALFRASV
                     SGLNADQLNTPYRDGGWTVREVAHHVPDSHMNAYVRCKLALTEESPTIKPYDEAAWSR
                     LGDVRVVPIEVSLALLDTLHTRWVALLQSLTDADFERGYIHPDHQRMVPLREVVALYA
                     WHGRHHTAHISSLRERSGWV"
     gene            1466..3295
                     /locus_tag="VLI40_02550"
     CDS             1466..3295
                     /locus_tag="VLI40_02550"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 and transglutaminase domain-containing
                     protein"
                     /protein_id="HSU96076.1"
                     /translation="MHEGEATHPIAELTTVTVESDGRVLKTFRRVIQVLTDAGASHLR
                     EQQFGYVPGHQSFDVHWLRVVRPDGSVISAAPTQIQESDVPAPVSTSPIYSDQKIVRM
                     SLSGVAAGTILDVEFTVEERKPALKDDFTETYVFTPGVSIGRARLILNVPASMRPIIR
                     EENLDFKRVVTTTGGRTRYLWSRDTTPKVRSEPFASDSNGVVMRVRIGGPLSWTDVSH
                     WYADLARDRYKATPLLSRTVDSLVAGAKTRDDSIRAVHRWVAQDIRYVGIELGIGGYQ
                     PRMPDTVIATGYGDCKDKATLFIAALDHLGMRAYPVLLSITATARRDVPTPHQFNHEI
                     AAVALPEGGYQFVDLTSSFNAYGELPGSIQGGFGLLVFPDGRNEEVTIPIDAPESNVQ
                     TTRITGVLAPDGKFEGHYVETATGSIAAGMRASFASPLDSTQRADAARRVARKYFSSA
                     EGDSLLAFNGRDYAAPTRVSVRIVNANATTAAGTVELLNNPFTSFAKMTSAADDIARL
                     PTRRFPIDASKIVGRLTGVSEFRVTLPEGWHARLPANVSATSVFGSYTATYSQEGRDL
                     VIARRIVGGSGIFMPTRVNELIGWLRAIGRDDTKFIVLEKPAN"
     gene            complement(3335..4120)
                     /locus_tag="VLI40_02555"
     CDS             complement(3335..4120)
                     /locus_tag="VLI40_02555"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HSU96077.1"
                     /translation="MTDASVWPRTLFIVRHGESAGNVARDEANAAREPVIRTSSSRDV
                     DVPLSPLGERQATALGHWFGALPKDQQPTVVFTSPYVRARQTTTIIKELGDFPYASNV
                     ASLIVDERFREKEFGILDGLTRYGIAERFPDQAALRTSLGKFYHRPPGGESWCDVILR
                     LRSAFEMMCREYHGERILVVAHSVVVLCMRYIVESLTEEEILKIDRENEVANCSVTRF
                     DVDQSQGPVGKLVLDSFNFVAPLIAEGAQITSTPDIPPVSQTS"
     gene            4275..>5505
                     /locus_tag="VLI40_02560"
     CDS             4275..>5505
                     /locus_tag="VLI40_02560"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSU96078.1"
                     /translation="MNLWYHVGSANERSGRTGFAHLFEHMLFQGSEHVGANEHFELVQ
                     RAGGTLNGSTWLDRTNYFETVPSNQLAIALWLEADRMGALLPAMTQQKLDTQRDVVSN
                     ERRWSVDNQPYGTWWEKLPALTYPDPHPFHHSLIGSFEDLKAASLDDIAHFFATYYTP
                     DNAVLTIAGDFDPREARELVQSYFAAIPRGKGKPALPDMTLPTTFGGTLREVVKDDVS
                     LPRLYLAFRSPAFGSNEYYAASVAGAILGMRKGSRLQRALVREREVATDATAFTFDLP
                     KGADILVVDVTARPGITPERLEQEVVREIDRMRFDGVTQSEVDRAVSLIGTDFIVSMQ
                     QASERAEQLSRFATYFGDPSFINDQMNRYRSVTVEDVDRFVSARLGEDNRAFLMYIPR
                     EDHEGSDAANTVDVDAAL"
BASE COUNT         1177 a         1564 c         1696 g         1068 t
ORIGIN      
        1 actttatggc ttgccgctgg actactacaa tcacgtagtg gatgagattg gcggagtcac
       61 gcagggcgaa gtgcagcggg ttgcgcagaa atacatcgac ccgtcgcatc ttaccgtgtt
      121 gatcgttgga gacagaaaga caatcgaagg accgatcaaa gcactcaaca tcggcccaat
      181 cgtgtttcgc gatgcgaacg gcaacccggt tcaatgacaa gtgggggatg aggagcatcg
      241 atgccgagga gaactaccgc aggaatagct gtcacggcac tgcttgtggc ggctgcatgc
      301 agtccgggca agcaggcgga caagtcacgc acaccggcac agagcgcatc tgaagcagca
      361 ggcgctgccg cggcatcgag ggacagcgtg gcgattcgaa cgaccgatgg ggccatacaa
      421 ctcgggctgg cacgcgacac agtttacatg ggacttacgg attccgtgct cacactcgcg
      481 cggaaagaca tggcgcgcga tacggaagaa accaggaacg caatcgcggg tacgatcgag
      541 cgattcgtca agaagagcgt aagctccgcg cttcagaccc gactcaagta ccctctcgcc
      601 gatctggata gcgtcaccta ccgggacgga gccatcaagt tcgcgtatcg ggacaagcgg
      661 cggatggggt tcgaagacgt aagtcaaaac ggtcacaagg cattgcaatc cttcaccccg
      721 gatgacgcgc aacacttcgt gagcgtggtc aactccgcca ttcgcgaaag tcggggttcc
      781 ttccaatgac atcgatgatt caggacatgc ggtatccggt ggggcgattc aagtatgacg
      841 gcgattcgtc ccgtgaagcg attgatcgct cgatcgcgga gattgctgcg ttgccagccc
      901 tgttccgtgc gtcggtcagc ggactgaatg ccgatcaact gaacacgccg taccgggacg
      961 ggggatggac agtgagggaa gtcgcgcatc acgttcctga cagtcacatg aatgcgtacg
     1021 tgcgctgcaa gcttgcattg actgaggagt ctccgaccat aaagccatac gacgaggctg
     1081 cctggtccag gctcggtgat gtaagggttg tgccgataga ggtatcactc gcgctcctgg
     1141 acactctcca cacgagatgg gtggcgcttc tgcaatcgtt gactgacgcg gatttcgagc
     1201 gcggctacat ccatcctgac catcagcgca tggtgcctct ccgggaagtt gtcgcactgt
     1261 atgcgtggca tggccggcat catacggcgc acatatcgtc attgcgcgag cgaagcgggt
     1321 gggtctgacg cggcgactcg cgttggcggt tgttgcatta ctattcgcaa cctcgtcgcc
     1381 ttgtatcgcg cagggtatca aagtcccttc agtcgctccg accccggctg acgattcgct
     1441 ctaccggctc actgtaaatc cggcgatgca cgagggtgag gctactcatc cgatcgcaga
     1501 gctgacgacc gtcactgtcg agagtgatgg gcgtgtgctc aagacattca ggcgcgtgat
     1561 tcaggttctg actgatgcgg gcgcgtcgca cctgcgcgag caacagttcg gatacgtgcc
     1621 ggggcatcag agcttcgacg tgcactggct cagagtcgta cggccggacg gatccgtaat
     1681 cagcgcggcg ccgactcaga tccaggagtc cgacgttcca gcgccggtat cgacgtcacc
     1741 catatacagc gatcaaaaga tcgtgcggat gtcactgtcg ggcgtcgccg ctggaacgat
     1801 tctcgatgtg gaattcaccg tcgaagaacg caagccggca ctgaaggacg atttcaccga
     1861 gacgtacgta ttcacgcccg gcgtatcgat cgggcgagct cgattgattc tgaatgtgcc
     1921 ggcgtcgatg cggccgatca tcagggaaga aaatctcgac ttcaagcggg tggtgactac
     1981 gaccggcgga cgaaccagat atctgtggtc acgcgacacg acgccgaaag ttcgctcgga
     2041 gccgttcgca tccgactcga atggcgtcgt catgcgcgtc cgcatcggtg gtccgctcag
     2101 ctggaccgat gtctcgcact ggtacgcgga tctcgcacgc gacagataca aggcaactcc
     2161 gttgctgagc aggaccgtgg actctctggt agcgggagcg aagacgcgag acgattccat
     2221 ccgggccgtt caccgatggg ttgcgcagga tatcagatac gttggcatag aactcgggat
     2281 cggcggctac cagccacgaa tgccggatac cgtgatagcc actggttacg gcgattgcaa
     2341 ggacaaggct acgctgttca tcgcggcgct ggatcatctt ggcatgcggg cctacccggt
     2401 cctgttgagc attactgcaa ctgctcgtcg cgacgtgccg acaccgcacc agttcaatca
     2461 cgagatagca gccgtcgcgc tgccagaggg cggctaccag ttcgtagatc tcacgtcatc
     2521 gttcaatgcg tacggagagt tgccaggcag cattcagggt ggctttggcc tcctcgtttt
     2581 ccctgacggc cggaacgaag aagtaacgat tccaatcgac gcgcctgaat cgaatgtgca
     2641 gacaacgcgc ataaccggag tgctggcccc ggacgggaag ttcgaaggcc actatgtgga
     2701 gacagcaacg ggatcgatcg ccgccggaat gcgagcgtcg tttgcatcac ctctcgattc
     2761 aacgcagcga gcggatgccg cgcgccgggt tgcgcgcaaa tacttctcga gtgccgaagg
     2821 agattcgcta ctggcgttca acggaaggga ctacgcagcg ccgactcgcg tcagcgttcg
     2881 aatcgtcaat gcgaatgcga ccaccgcggc gggaaccgta gagctgctga acaatccgtt
     2941 caccagcttc gcaaaaatga cgtcagcggc agacgacatt gcacgtctgc cgactcggcg
     3001 ttttccgatc gacgcatcga agatcgtggg acggttgacc ggcgtctcgg agtttcgtgt
     3061 gacgcttccg gagggctggc acgcacggct tccggccaac gtatcagcga cgagtgtatt
     3121 cggcagctat acggcgacgt actcgcagga gggacgcgat ctcgtcatcg cccgtcgtat
     3181 cgtgggtggg tcgggaatat tcatgcctac ccgagtgaat gagctcatag gctggctgcg
     3241 cgcaataggc cgtgatgaca cgaagttcat cgtgctggag aagccggcga actgaagaac
     3301 tcgggacgaa cctgaccgga cgtcgggctt cgtatcagct ggtctgggat acgggaggga
     3361 tgtccggggt ggaggtgatc tgagcgcctt cggcaatgag gggagcaacg aagttgaaac
     3421 tgtcgaggac cagtttgcca acggggccct ggctctgatc cacgtcaaag cgggtgacag
     3481 agcaattggc cacctcattc tcgcggtcga tcttcaatat ctcttcctcg gtgagacttt
     3541 cgacgatgta gcgcatgcag agcacgacga ccgagtgcgc cacgacgagt atgcgctcgc
     3601 catggtactc ccggcacatc atctcgaagg cgcttctcag tcgtaaaatc acatcgcacc
     3661 agctctcacc gccgggcggc cggtgataga acttcccaag cgatgtacgc agcgccgcct
     3721 ggtcgggaaa acgctcagcg atcccgtacc ttgtcagacc atccagaatt ccgaactcct
     3781 tttcgcggaa gcgctcgtcc actatcaggc tcgcgacatt gctcgcgtaa gggaaatcgc
     3841 ccagctcctt gattatggtg gtggtctgtc gcgcccgaac gtagggtgag gtaaaaacga
     3901 ccgtgggctg ttggtccttt ggcagcgcac cgaaccagtg accgagtgcc gtagcctgcc
     3961 gctcgcctag cggagacagg gggacatcga catcacgaga cgatgaggtg cgtatgacgg
     4021 gctctcgtgc ggcattggcc tcatcacgcg ccacattccc ggccgattcg ccgtgccgca
     4081 ctatgaatag agtgcgtggc cagacagatg catcggtcat tcttaagacg ttgccaaggg
     4141 aagaagtacg gaaggataca ttctatatta cctggaaacc aaccactgtc atgcgtattc
     4201 cgatagagac attccgactc gggaacggtt tgttagtaac gttttccgag gatcataccg
     4261 caccgattgt agcggtgaac ttgtggtatc atgtcggctc ggcgaacgag cgctccgggc
     4321 gtacggggtt cgcccatctg ttcgagcaca tgttgttcca gggatcggag cacgtggggg
     4381 cgaacgagca cttcgagctg gtgcaacgtg ccggcggaac actcaacggt tccacatggc
     4441 tggaccggac gaattacttc gagacggttc cgtccaacca gctcgcgatc gcgctgtggc
     4501 tcgaggcgga ccggatgggc gccctgctgc cggccatgac tcagcagaag ctcgacacac
     4561 agcgcgacgt ggtgtcgaac gagcggcgct ggtccgtcga caaccagccg tacggtacgt
     4621 ggtgggagaa actgcccgcg ctcacctacc ccgacccaca tccgtttcat cattctctga
     4681 tcgggtcgtt cgaggacctg aaggcggcgt cgctggacga catcgcgcac tttttcgcga
     4741 cgtactacac accagataat gcagtgctga ccatcgcggg tgatttcgat ccacgagaag
     4801 cgcgcgagct ggtgcagtcg tacttcgcgg cgatcccgcg cggcaagggc aagcctgcac
     4861 ttccagacat gacgctaccg acgacgttcg gcgggacgct gcgtgaggta gtgaaggacg
     4921 acgtaagtct tccgcgtctg tatctggcct tccgctcgcc agcatttgga agcaacgagt
     4981 attacgccgc atctgtcgcc ggcgcaattc tcggaatgcg caagggaagc agactgcagc
     5041 gggcgctggt gcgtgagcgt gaagtcgcaa cggacgcgac cgcgttcacc ttcgacctgc
     5101 ccaagggcgc agacattctg gtagtcgacg tcactgcacg tccaggtatt acgccggagc
     5161 gtctggagca ggaagtcgtg cgagagatcg atcgcatgcg attcgacggt gtaactcaaa
     5221 gcgaggttga tcgggccgtc tcgctcatcg gcacagactt catagtgtcg atgcaacagg
     5281 cgtcggaacg cgccgaacag ctgtcacgct ttgccaccta tttcggcgac ccgtcgttca
     5341 tcaacgacca gatgaaccgt tatcgctcag tcactgtcga agacgtggac cggtttgtct
     5401 cggcgcgcct cggcgaggac aaccgggcct ttctgatgta cataccgcgg gaagatcatg
     5461 aaggatcgga tgcggcaaac accgttgacg tcgatgcagc tctgg
//
LOCUS       DATIMD010000115         3187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4954911, whole genome shotgun sequence.
ACCESSION   DATIMD010000115 DATIMD010000000
VERSION     DATIMD010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3187
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4954911"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..704)
                     /locus_tag="VLI40_02565"
     CDS             complement(<1..704)
                     /locus_tag="VLI40_02565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSU96079.1"
                     /translation="MSAFNGNRRVPPPANEPVKSYAPGTPERTELKSRLASMASERIE
                     IPVVIGGKEFRSGKLAQAVMPHNHSHVLADWHMATPEMLQKAVTASAEARKEWSSWSW
                     GDRAAVFLKAAELLTTTHRQTLNASTMLGQSKTPFQAEIDSACELIDFWRFNPYYAEQ
                     LYDQQPLSDHTMWNQLDYRGLEGFVYAVTPFNFTSIAGNLPTAPALMGNTVIWKPAAT
                     AILSAWYIYKLLEEAGL"
     gene            723..1529
                     /locus_tag="VLI40_02570"
     CDS             723..1529
                     /locus_tag="VLI40_02570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96080.1"
                     /translation="MYSGEVSLRGQRLVGSVARAGAAVIAILLTVACSSSPVTLGDVS
                     YPGSPVITPHPPAAATPNGACPGSLRTVQSGPDVYGAWWEVRDDSSSVLMVGRSTDQG
                     KSWAIAQPADTADVSRGGCARPAPAIAADSSTNYVDIAYFLVAKEGPGIFFTHSMDAR
                     TLGTGDGIFHSPVPVVYGDQSAHVSVAARGDDLVVAYEDPNGDLSQVGLALSRTMGHI
                     FEQRLIVSPQGLSARSPMVALRGDSVLVQWRERPDSMATGGRIAVRSARW"
     gene            1639..2028
                     /locus_tag="VLI40_02575"
     CDS             1639..2028
                     /locus_tag="VLI40_02575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIB/MDM2 domain-containing protein"
                     /protein_id="HSU96081.1"
                     /translation="MPAKKKSTAKKSSAKKAPAKKAAAKKAPAKKAAAKKAPAKKKTA
                     ARKPNAAFMKAMTPSPELAAVVGSKPMPRTEITKKLWVYIKKHNLQDPKERRMINADD
                     NLKAVFNGKKQVSMFDMTKLVNKHLKD"
     gene            2044..2829
                     /gene="lepB"
                     /locus_tag="VLI40_02580"
     CDS             2044..2829
                     /gene="lepB"
                     /locus_tag="VLI40_02580"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HSU96082.1"
                     /translation="MSNEVQKGRAGKARPFAQQSPGHVIWENVKGFAIVIVVFLAFRA
                     FVAEAYRIPSGSMIPTLLVGDWLFVNKMTYGAHIPFTDSRLPGYRTPTKGDVVVFVSP
                     YQADNGDDPTPTLVKRLVGSGGDTLYMRHAVLYVNGVESDRPASAIDPSRQVPPQPDY
                     PDPEHFGWQKRYALSSSRFGPAPAEPTHDNWGPIVVPANHFFMMGDNRYDSKDSRYWG
                     FVPRENVRGRPMFVYYSYNADDSDRPLPFITDIRWSRLGHWIK"
     gene            2898..>3187
                     /locus_tag="VLI40_02585"
     CDS             2898..>3187
                     /locus_tag="VLI40_02585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96083.1"
                     /translation="MAIIAGVVVRVLHVIANAHGEELDWHSFVGTFIAIPVILLALAT
                     IHLASYPLHQWVWRAPAFALLESTAESLLSLVLIFAGRERWGTGRAVFGDWPA"
BASE COUNT          613 a          953 c          998 g          623 t
ORIGIN      
        1 aggccggctt cttcaagcag cttgtagatg taccaggcgc tcaggatcgc cgtcgcagcg
       61 ggcttccaga tcacggtgtt gcccatcaac gccggcgcgg tcggaagatt tcctgcgatc
      121 gacgtgaagt tgaacggcgt caccgcgtac acgaagcctt ccagtccgcg ataatccagc
      181 tgattccaca tcgtgtgatc gctgagcggc tgctggtcgt atagctgctc cgcgtagtac
      241 ggattgaagc gccagaagtc gatcagctcg cacgcggaat cgatctcggc ctggaacggt
      301 gtcttggact ggccgagcat cgtcgaggcg ttgagcgtct gacggtgtgt ggtggtgagc
      361 agctctgccg ccttgagaaa gaccgcggcg cgatcgcccc acgaccagct gctccattcc
      421 ttgcgcgctt cggccgatgc cgtgaccgct ttctgcagca tttccggcgt cgccatgtgc
      481 cagtccgcga ggacgtgcga atggttgtgt ggcatcacag cctgcgcgag cttgccgctg
      541 cgaaattcct tgccgccaat gacgaccggt atctcgatgc gctccgaagc catggatgcg
      601 aggcgcgact tgagctcggt gcgctccggt gttcccggcg catatgattt caccggctcg
      661 ttggccggag gagggactcg tctgttaccg ttgaatgctg acatgcttgt aaattagcaa
      721 acatgtacag cggggaagta tcgttgcgcg ggcagaggct cgttgggagc gtcgcacgtg
      781 ccggagcggc ggtgattgcg atccttctga cggttgcatg ctcttcatcg ccggtgacgc
      841 tgggcgatgt gagctatccg ggttcgcccg tcataacgcc gcatcctccg gccgccgcca
      901 ctcccaacgg cgcgtgtccc gggtcgctcc ggacagtgca atccggccct gatgtttacg
      961 gcgcatggtg ggaagtacgc gacgacagca gctccgtcct catggtgggc cggtccacgg
     1021 atcagggaaa atcatgggca atcgcgcagc ccgctgatac ggcggatgtt tcccgcggcg
     1081 gctgcgccag gcccgcgcct gcgatcgcgg ccgacagcag caccaactac gtggacatag
     1141 cgtatttcct cgtagcgaag gagggtccgg gaattttctt cacccatagc atggacgccc
     1201 ggacgctcgg aaccggcgac ggaatatttc actcgccggt tcccgtggta tacggcgacc
     1261 agtccgcgca cgtgtcggtc gcggcgcgtg gagacgatct ggtagtagcg tatgaagatc
     1321 cgaatggtga tctctcgcag gtggggctcg cgctatcccg caccatggga cacatcttcg
     1381 agcagcggtt gatcgtgtca ccgcagggcc tctcggcgcg atctcccatg gtcgcgctgc
     1441 ggggggattc ggtgctggtt cagtggcggg aacgccccga ttccatggca acgggcggtc
     1501 gtatagcggt gcgttccgca cgctggtagg gaaaaagcga tactttcatg ggagaaattc
     1561 gcagtttccc tattgcgcgt tgctctctag gatatagctt gctccccgtc cggaatttcc
     1621 gcactcacag gagattgtat gccagcgaag aagaagagca cggccaagaa gtcgtcagcg
     1681 aagaaggcgc cggccaagaa ggccgctgct aaaaaggcac cagccaagaa ggccgctgcc
     1741 aagaaggcgc ctgccaagaa gaagacggca gctcgcaagc cgaatgcagc attcatgaag
     1801 gccatgacgc cttcaccaga gctcgccgcc gttgttggca gcaagccgat gccgcgcacc
     1861 gagatcacca agaagctgtg ggtgtatatc aagaagcaca atctgcagga ccccaaggag
     1921 cgtcgcatga tcaatgctga cgacaacctg aaggccgtgt tcaacggaaa gaagcaggtg
     1981 tcgatgttcg acatgaccaa gctcgtcaac aagcacctca aggattgatc aggcggtaat
     2041 taagtgtcga atgaagtaca gaaggggcgc gccggtaaag cgcgcccctt cgcgcaacag
     2101 tcgcccggcc atgtgatatg ggagaacgtg aagggattcg cgatagtcat cgtggtcttt
     2161 ctcgcgttcc gcgcattcgt cgcagaggca taccgaatcc cttccggcag catgattcca
     2221 acgctgctcg tgggtgattg gttgttcgtc aacaagatga cgtacggcgc gcacattcct
     2281 ttcaccgata gccgcctgcc gggatatcgg actcccacaa agggagacgt cgtagtgttc
     2341 gtctcgccgt atcaggccga caatggcgac gatcccacac cgacgctcgt caagcgtctc
     2401 gttggatcgg gcggcgatac gctctacatg cgtcacgcgg tactgtacgt gaacggtgtc
     2461 gagtccgacc gtcccgcgtc ggcgatcgat ccgtcgcgcc aggtgccgcc gcagccggac
     2521 tatccggatc cggagcattt cggctggcag aagcggtacg cgctgtcatc gtcgcgcttt
     2581 ggtcccgcgc cggcggaacc gacccatgac aactggggtc caatcgtcgt gccggccaac
     2641 catttcttca tgatgggcga caaccggtac gactcgaagg acagccggta ctggggtttc
     2701 gtcccacggg agaatgtgcg cggacgtccg atgttcgtgt actactccta caacgcggat
     2761 gactcggacc ggccgttgcc gttcatcacc gacatccgct ggtcacgact gggacattgg
     2821 atcaagtagg gacaggcaca gagtatcacc ccgctccccg gagcgtatgg caccggatcg
     2881 ccgcctcgtt gatcgagatg gcgatcatag ctggagtcgt cgtgcgcgtg ttacacgtga
     2941 ttgcgaacgc gcacggtgaa gagctggact ggcactcgtt cgtcggcacg ttcatcgcga
     3001 tacccgtaat actgctcgcg ctcgcgacga ttcatctcgc gagctacccg ctgcatcaat
     3061 gggtctggcg cgcgccggcc ttcgcgctgc tggaatcgac agccgaatca ctactcagcc
     3121 tcgtgctcat cttcgccggc cgcgagcgat ggggcaccgg ccgcgcggtg ttcggcgact
     3181 ggcccgc
//
LOCUS       DATIMD010000116         7168 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2066016, whole genome shotgun sequence.
ACCESSION   DATIMD010000116 DATIMD010000000
VERSION     DATIMD010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7168
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2066016"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..343
                     /locus_tag="VLI40_02590"
     CDS             <1..343
                     /locus_tag="VLI40_02590"
                     /inference="COORDINATES: protein motif:HMM:TIGR00369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HSU96084.1"
                     /translation="EPTRVVATMPVDDRTRQPFGLLHGGASVALAETTASLGAFANID
                     PTQFAAVGLEINANHIRAKRDGIVRATAEPIHVGRTTQVWTIRIADEDDRTVCVARCT
                     IAIVKSQRPEE"
     gene            969..2315
                     /locus_tag="VLI40_02595"
     CDS             969..2315
                     /locus_tag="VLI40_02595"
                     /inference="COORDINATES: protein motif:HMM:NF016994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythromycin esterase family protein"
                     /protein_id="HSU96085.1"
                     /translation="MISPTAHKPDRATRGLTKAIADASLPLTNADDLDPLIDAIGDSR
                     YVLLGEASHGTSEFYTWRTELSKRLISEKQFSFIGVEGDWPDCYRVNRFVKGYQNSGA
                     SAAEVLHAFDRWPTWMWANREVIALAEWMHEHNRRLPEEQQAGFYGLDVYSLWESMAA
                     VVEYLEGVDPELAITAKKAYNCFEPFNEDVQEYARATAIVPMSCQDEAVRVLRDLRAR
                     APEFREDGREAYFNAEQNAIVTRGAELYYRTMVRGGPTSWNVRDHHMVDTLDRLMLHH
                     GDHAKAIVWEHNTHVGDARFTDMARAGMVNVGQLVRQSHEPDGVVLAGFATHHGTVIA
                     GAQWGAPMRRMKVPDARAGSVEDLLHRANDGGDALLVFDGSEDGGIEGLDAPLDNRAI
                     GVVYDPRAERYGNYVPTIVPRRYDALLFIDETHAVDPLHMPVHVAADEPETYPSGM"
     gene            2745..4319
                     /locus_tag="VLI40_02600"
     CDS             2745..4319
                     /locus_tag="VLI40_02600"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96086.1"
                     /translation="MSVFRAVQRSVVAFTACTLAAVTARTLQAQAPIVSAPISGVHYD
                     VTADSAAVGSRQLGVTMTFRASSTRPVVLALPAWSPGHYTLLWFARRVSNFSAESNGS
                     PLGWHMNDYQTWVIDPKGPGEIQVSFKYLADTIDRAVAWTKPNFSFFNGTNLFMYPAG
                     RSLEWGASVTVHTEPSWRVATGMTPSTQPNTFSAARYHDLVDMPFFVGRFGIDSTNVQ
                     NHWIRLAMYPDTIMTAARRARFLGWVDRFVPAEMAVFRDVEFRNYTIFFVADTVVNAG
                     GLEHQNSQMDEIPLARLEETPPSLFSHEFFHSWNVKRLRPADMVPYSYRDAQPTKWLW
                     VSEGVTDYYANVALVRGGVTDSSGFYKAIAGYIRATDGAGAVSLSDASLSVWVDPTNS
                     MSGIYYPKGGLAGFLLDIMIRDASNNRNSLDTVMRTLYNNTYKHGNGFTSNDWWSEVS
                     RAGGGRSFDEFRRRYVDGREPMPIDSVLALAGLHATRSGAKEQVTVTETANASAKAVA
                     IRSGIMHGDASTAMRR"
     gene            complement(4349..5362)
                     /locus_tag="VLI40_02605"
     CDS             complement(4349..5362)
                     /locus_tag="VLI40_02605"
                     /inference="COORDINATES: protein motif:HMM:NF024884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HSU96087.1"
                     /translation="MNRRAIVMWTVWTLALIAVTLLLLAFRARLDKAHVILVFLLVIL
                     GASAAGGRALGVVLSLAAFVIFDLVFLPPYGTLVVRNPLDWLALVAFLVTSVVAAQLL
                     YMARAQRAAVEREVAAREGERLKDALLAAVSHDLRTPLTSIKGLAHELSQDGDERAVI
                     IEEEADRLNRLVTDLLDAARMSAGNFPVAPQSNALDDLLGVVVRQFAGRADRNRLEVS
                     LDRPDELVIGVFDFVQTLRIVTNLVDNALKFSPVDAHVQLTGGSEGGRMVVRISDRGP
                     GIAGNGEPRALDTAYGDTRSVSAGLGLSIARGLATAQGGSVEYEHRAGGGSVFSLFLP
                     LAC"
     gene            complement(5382..6071)
                     /locus_tag="VLI40_02610"
     CDS             complement(5382..6071)
                     /locus_tag="VLI40_02610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU96088.1"
                     /translation="MPRSAVIIEDDPPIRRVLRHALEPDFDRVLEAGMAAAGIDLVAS
                     EQPALVVLDLGLPDAEGVNVCRELRTWCVAPILILSARHSESEKVALLDAGADDYITK
                     PFSTAELQARVRALLRRASVGNAPSPRIEFGPYVMDLAGRTLRRDGEMVHLTPIEWEL
                     LRTLAINAGRTLTHTQLFAAVWAGRRYGDAQQYLRTHVANLRRKIEEDVLDPRYVVTE
                     PGIGYRFAGTP"
     gene            6468..>7168
                     /locus_tag="VLI40_02615"
     CDS             6468..>7168
                     /locus_tag="VLI40_02615"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF015753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HSU96089.1"
                     /translation="MTWNGWAQILAFSLVLLLITKPAGIYLTRVYDGSLQYLGWLERV
                     IYRVCGVDPRETQHWLDYLIAAMLFSAVSMLVTYVALRAQGHLPLNPQQLPGVADRQA
                     FETAASFATNTDWQSYAGESTMSYLSQMMQLAFHNFVSAAVGLCVAAALVRGIANRSA
                     GRLGNFWTDLVRGVLYVFIPGAVVLALLFVQQGVLQNFKPYLTVGTLDGAKQILAMGP
                     VASQEAIKQLGTNGGG"
BASE COUNT         1366 a         2177 c         2261 g         1364 t
ORIGIN      
        1 ggagccgacc cgcgtggttg cgacgatgcc tgtcgatgac cggacaaggc agccgtttgg
       61 cctgctgcat ggaggcgcat ccgtcgcact ggcggaaacg actgcatcgc ttggtgcgtt
      121 cgcgaacata gatccgaccc agttcgccgc tgtagggctc gagataaacg cgaaccacat
      181 tcgagccaag cgcgacggca tcgtgagagc cacggcggag ccgattcacg tggggcgcac
      241 cacccaggtg tggacgatca ggatcgcgga cgaggacgat cgtaccgtct gcgtcgcgcg
      301 atgcacaatc gcaatcgtga agtcacagcg gcctgaggag taagagagga cagagcggtc
      361 ggcggccgct cgctgcacgg ctcgcttcac gcctcgctca ttcgctcatg cgatcgccgg
      421 gctggtcgcc gggaccggga tcggtgcgcg ccttttgctc gcggtccggc cgcactctgc
      481 ggtccctgcc cgaccggcgc cggcgtggct cccgcggcgt cccgtcagcg tcgccagcgc
      541 ccggcttggg agggaggtca gcgattccgg gctccggctg gactacaggg cgaggcggcg
      601 aggcggcgag accattccgc ccgttccaag ccggggaagg cagcggagcg tcgccgtctc
      661 tggttggaaa aaagagaaac ggaggcgttg aagtacttcg atggcgacgg cgccgggctc
      721 gccgggcgac tgggtcccga ttcacgagga atatcgggac cgcaatcaga agaatcacaa
      781 atgcgattat ccctgcagtt gccatttgag ccttgagtcg ggaagcgacc gaacgacgac
      841 tgcgccgatc gtcctccccg cccttgcaca cttcatgcga gaaaacgagg tggtgcgata
      901 tcgactttca tacagcctca tatcgcctcg gttcccacca gcgtacgtac gcttcttctc
      961 agcgtccaat gatctcaccc actgctcaca aaccagaccg cgcgacgcgc gggctcacca
     1021 aagcgattgc ggatgcatcg ctgcccctga ccaacgcaga tgatctcgat ccgctgatcg
     1081 atgcgatcgg cgattcacgt tacgttctgc tcggcgaggc ctcgcacggt accagcgagt
     1141 tctacacatg gcgaacggaa ttgtccaagc gtctcatctc cgagaaacag ttctcgttca
     1201 tcggcgtcga aggtgattgg ccggattgct atcgtgtcaa tcgcttcgtg aagggatatc
     1261 agaactctgg cgcgagcgct gcggaggtgc tgcatgcgtt cgaccgatgg ccgacgtgga
     1321 tgtgggccaa tcgggaagtc atcgcgctcg cggagtggat gcacgagcac aatcgccgcc
     1381 ttcccgagga acagcaggcc ggattttacg gcctggacgt ctattccctc tgggagtcga
     1441 tggccgcggt ggtcgaatat ctcgaaggcg ttgatccgga gttggcgatt accgcgaaaa
     1501 aagcgtacaa ctgcttcgag ccgttcaacg aagatgttca ggaatacgcg cgtgccactg
     1561 ccatcgttcc gatgtcatgc caggacgaag ccgtgagagt gctgcgcgat ctgcgcgcca
     1621 gagcgccgga gttccgcgaa gatgggcgcg aggcgtattt caacgcggag cagaacgcca
     1681 tagtcacgcg cggcgccgag ttgtattaca gaacgatggt gcgcggcgga ccgacgtcgt
     1741 ggaacgtgcg cgatcatcac atggtcgaca ctctggaccg gctgatgctg caccatggcg
     1801 atcatgccaa ggcgattgtc tgggagcaca atacgcatgt gggcgatgcg cgcttcaccg
     1861 acatggcgcg cgcgggcatg gtgaacgtgg gtcagctcgt gcgacagagc cacgagccgg
     1921 acggagtcgt attggctggc ttcgccacgc atcacggcac tgtcatcgcc ggagcgcagt
     1981 ggggcgctcc gatgcgccgc atgaaggtcc ctgatgcgcg agcggggagc gtggaggacc
     2041 tccttcatcg cgccaacgac ggcggcgacg cactgcttgt cttcgatggc agtgaggacg
     2101 gcggcataga agggctggac gcgccgctgg acaaccgcgc gatcggagtg gtatatgatc
     2161 cgcgtgcgga acgatatggc aactatgtgc cgactatcgt tccgcgcaga tatgacgcat
     2221 tgcttttcat cgacgagacg cacgcagtag atccgctgca catgccggtg catgtagccg
     2281 ccgacgaacc cgagacctat cccagcggca tgtagcgccc gctagcgcgg acgggctgca
     2341 tcctcgtttc catctggctc ggaggctggg acggagccga cggcggcatg gatcgcagca
     2401 ccgcgtgtgg aactgctgct gctggtctgg tcgtccaggc gcctgaatgg gcgcgtaggc
     2461 tcgaaggtac caccggtatc ctctgcgatc tgttgcggcg tgcgatgact gtggcgtgga
     2521 tatagatcga acacgatgca ctccctgggg cgatacgtga ccctgcgagc ggttgaggct
     2581 cgcattgatg tgggtatatc acaacagcag tttacgcgcc ccgttgcaga cgaacgcgcg
     2641 aatactcgac gccggtgcgc aggacgggta ttctcggcat attatccgcg cggccggcgg
     2701 cggcatgcaa cgtcgcgtcg ttgtcgtttc gttatggagg atccatgtcc gtgtttcgcg
     2761 ctgtccagcg gagtgtcgtt gcgtttactg cctgcaccct tgctgcggtt actgcaagga
     2821 ctcttcaggc gcaggctccg atcgtttctg cgccgatttc cggtgttcac tacgacgtga
     2881 ccgcggattc ggctgccgtc gggagccgtc agctcggcgt taccatgaca ttccgggcga
     2941 gcagtaccag gccggttgtg cttgctctgc ccgcgtggtc gcccggccat tatacgctgc
     3001 tctggttcgc gcgccgagtg tcgaacttca gtgctgagtc gaacggctcg ccgctggggt
     3061 ggcacatgaa cgactatcag acgtgggtga tcgatccgaa gggaccgggc gagattcagg
     3121 tctcgttcaa ataccttgct gatacgatcg accgcgccgt tgcatggacg aaaccgaatt
     3181 tctcgttctt caatggaacc aacctgttca tgtacccagc cggccggagc ctcgaatggg
     3241 gtgcaagcgt aaccgttcac accgagccat cgtggcgcgt tgcaaccgga atgacgccgt
     3301 cgactcaacc caacactttc tcggccgcac ggtatcacga tctggttgac atgccattct
     3361 tcgtcggtcg cttcggaatc gacagcacca atgtgcagaa ccactggata agactggcga
     3421 tgtacccgga tacgatcatg acggctgcgc gccgcgcgcg ttttctcggc tgggtggaca
     3481 ggttcgttcc cgccgagatg gcggtgttcc gggacgtcga gttcaggaat tacacgatct
     3541 tctttgtcgc cgacacagtc gtgaacgcgg gcgggttgga acaccagaac tcgcagatgg
     3601 acgagatacc gctcgcgcga ctggaagaga cgccgccgag cctgttctcc cacgaattct
     3661 tccattcctg gaacgtgaag cgcctgcggc cagcggacat ggtaccgtac agctatcgcg
     3721 acgcacaacc gacgaagtgg ctgtgggtga gcgagggcgt aaccgactat tacgccaacg
     3781 tcgcgctggt gcgcggtggc gtcacggaca gtagtggatt ctacaaggca atcgccggat
     3841 atatcagggc gaccgacggc gccggtgcgg tgtcgttgag tgatgcgtcc ctctccgtat
     3901 gggtcgatcc gaccaacagc atgagcggca tctactatcc caagggcgga ctcgcgggat
     3961 ttctcctgga catcatgatc cgcgacgcga gcaataacag gaactcgctg gatacagtca
     4021 tgcgcacgct gtacaacaac acttacaagc atggaaatgg cttcacgagc aacgactggt
     4081 ggtcggaagt cagtcgcgct ggcggcggca ggtcattcga tgaattcaga cgacgctacg
     4141 tcgatggccg cgagccgatg ccgatcgaca gcgtgcttgc gctggcaggc ctgcacgcaa
     4201 ctcgttccgg tgcgaaagaa caggtgacag ttacggaaac ggccaacgct tctgcgaagg
     4261 cagtcgcgat acgaagcggg ataatgcacg gtgatgccag caccgctatg cgcagatagc
     4321 gtcgtctacc gtgtagtttc cggctgctct aacacgcgag cggcaggaag agcgagaaga
     4381 cactgccgcc gcccgcgcga tgctcgtact cgacgctacc gccctgtgcg gtggcgagac
     4441 cgcgcgcgat cgacaggccg agtcccgccg agacactccg ggtgtcaccg taggcggtgt
     4501 cgagcgcgcg cggctctccg ttcccggcta tccccggacc gcggtcggaa atgcgcacca
     4561 ccatgcgacc accctcggag ccgccagtga gctgcacatg cgcgtccacg ggcgagaact
     4621 tgagagcgtt gtcgaccagg ttcgtcacga ttcgcaacgt ctgaacaaag tcgaagacgc
     4681 caattaccag ctcatcggga cgatccagcg aaacctcgag tcgattcctg tccgcgcgcc
     4741 cggcgaactg acgcacaacg acgccgagga ggtcgtcgag agcattcgat tgcggagcga
     4801 cggggaaatt acccgcgctc atccgcgcag cgtcgagcag atcggtaacc agccggttca
     4861 gtcgatccgc ctcctcttcg attatcaccg cgcgttcgtc accatcctgc gacagctcgt
     4921 gtgcaagccc ttttatggat gtgagcggcg tgcgcaggtc gtgagagact gccgcgagca
     4981 acgcatcttt cagtcgctcg ccctcgcgcg cggctacttc gcgctcgacg gctgcgcgct
     5041 gggcacgggc catgtaaagg agttgcgcgg ccaccacgct ggttacgaga aaggccacca
     5101 gcgcgagcca gtcgagtggg tttcgcacga ccagcgtgcc gtatggtggc agaaatacga
     5161 gatcgaagat cacgaatgcg gcgagcgata gcaccacacc gagcgcccgt cctcccgcag
     5221 cgcttgcacc gagtatcacc agcaggaaca cgagaatcac gtgcgccttg tccagccgtg
     5281 cgcggaacgc gaggagcagc agcgtgaccg cgatcagcgc aagcgtccac acagtccaca
     5341 tgacaatcgc ccggcgattc atcggcgttc ctgcgttacc ttcacggcgt tcccgcgaag
     5401 cggtatccga ttcccggctc ggtaacaaca taacgcgggt ccaggacatc ctcttcgatc
     5461 ttgcgtcgca ggttggcgac gtgcgtgcgt agatattgct gcgcatcgcc gtatcgccgc
     5521 cctgcccaga ctgcggcgaa caattgtgta tgtgtaagcg tacgcccggc atttatcgcg
     5581 agcgttcgca gcagctccca ctcgatcggg gtgagatgaa ccatctcgcc atcgcgccgc
     5641 agagttcgtc cggcgagatc catcacgtac ggcccgaact cgattcgagg cgacggtgca
     5701 ttgccgacgc tcgcgcgacg taacagcgcg cgcacacgcg cctgcagttc cgccgtgctg
     5761 aatggcttgg tgatgtagtc gtccgcaccg gcgtcgagca acgcgacctt ctccgactcc
     5821 gaatggcgcg cggatagtat cagaatcggt gcaacgcacc aggtgcgaag ctcgcggcac
     5881 acgttgaccc cttccgcgtc cggcaggccg agatcgagta ccacgagggc aggctgttcc
     5941 gatgcgacga gatctatacc cgccgccgcc atacccgcct cgagtacccg gtcgaagtca
     6001 ggctcgagcg cgtggcgcag cacgcgtcga atgggaggat cgtcctcgat gatcactgcg
     6061 gagcgcggca cgatatgaag tttacggtat tggcgcgccg acgctacccg cgaagccgat
     6121 tgccggtggt cgtccagcga gggctttgta caatctttgt gccgcccccc agcatcattg
     6181 tgcgccctct atggcggccc gcctagtcta ctggtgtgaa gcaattcgac tcaccgaggg
     6241 gaccacgcaa taccatgact gaaccatgac tgacgcaatg tacgtcgctg caacgctgct
     6301 tttcttcggc ctcatgatcg cttacggcta cggctgccga gcgctcggcc gcgaatccgg
     6361 cgccggtcga gcggatacat gacggtggac tcgattgtag ctgcgatcgt gagcgtcgcg
     6421 ctcgtctgct acctgttcta cacattgctt cgtccggaaa ggttctgatg acgtggaacg
     6481 gatgggcgca gatactcgcc ttcagtctcg tgctgctgct cattacgaag ccagcgggca
     6541 tatacctgac gcgcgtgtac gacggatcgc tccaatatct gggatggctc gagcgggtca
     6601 tctaccgcgt ttgcggtgtg gatccgcgcg agacccagca ctggctcgat tatctcatcg
     6661 cggcgatgtt gttcagtgcc gtgtcgatgc tcgtgacata cgttgcgttg cgtgcgcagg
     6721 gccatctgcc gctcaatccg caacaattgc cgggcgtcgc ggatcggcag gcgttcgaga
     6781 ctgctgcgtc gtttgccacc aatacggact ggcaatcgta cgccggcgaa tcgacgatgt
     6841 cgtatctgtc gcagatgatg cagctcgcct tccacaactt cgtttcggcc gcggtaggct
     6901 tgtgcgttgc tgctgcactc gtgcgaggga tcgccaatcg gtccgcgggc cgcctcggga
     6961 atttctggac cgatctcgtt cgcggcgtgc tctacgtctt cattcctgga gccgtcgttc
     7021 tggcgctcct gttcgtgcag cagggcgttc ttcagaactt caagccgtac ctgaccgtcg
     7081 ggacactcga cggtgcaaag cagatcctgg ccatgggacc tgtggcgagt caggaagcga
     7141 tcaagcaact cggcacgaac ggcggtgg
//
LOCUS       DATIMD010000117         3714 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5533264, whole genome shotgun sequence.
ACCESSION   DATIMD010000117 DATIMD010000000
VERSION     DATIMD010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3714
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5533264"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..203)
                     /locus_tag="VLI40_02620"
     CDS             complement(<1..203)
                     /locus_tag="VLI40_02620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96090.1"
                     /translation="MTSAYNRAQDDAGLTDSQHESNLVNDEPSSDGVDRRHILSCMAW
                     AGTGMLWTLSGGVPRSSLLGAESL"
     gene            complement(284..1321)
                     /locus_tag="VLI40_02625"
     CDS             complement(284..1321)
                     /locus_tag="VLI40_02625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96091.1"
                     /translation="MGDELDHELHAHDYAAMIARHAALRYLRYCSLLVALLPLRMSAQ
                     ASPDSTRQSLSDAWWTGPVAAAGAGTLPPGHVLFEPYFYDVHTTHANSFGSSAFLVYG
                     LADRVALGFIPVVGYNKLNKGSSDGPSSSRVGLGDVSLLAQYRLTQFHEGSWMPTISA
                     LVEETFPTGKYDRLGDRPSDGLGQGAYATTLSIYSQTYFWMPNGRILRTRLDLSQAFS
                     NAATVRDVSVYGTEAGFRGHAKPGSSFFADASAEYSMTKKWVLALDLNYGQRAGTSVS
                     GYDALSSVGGQSSQDIRMKSGWSDAVGFIPAVEYNWTPNAGVILGVRRILPGRNSAGS
                     VTPVMAINLVR"
     gene            complement(1270..1794)
                     /locus_tag="VLI40_02630"
     CDS             complement(1270..1794)
                     /locus_tag="VLI40_02630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96092.1"
                     /translation="MMIAPEFAPTVLAPLRDGSHDFDFLHGRWRVHHWRLCHPLSGSS
                     EWYEFDGTAVERPLWDGHANFEELDARLSDGRLCGRALRLYSPSSRQWAIHRSTAHNG
                     TLDHPMMIGDFRNGYGEFYSQERFEECSIRVRFYWTCITREKCRWEQAYSADGGTTWE
                     TNWIMSFTRMTTRR"
     gene            1879..3366
                     /locus_tag="VLI40_02635"
     CDS             1879..3366
                     /locus_tag="VLI40_02635"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HSU96093.1"
                     /translation="MKATASPEIVSLLPVDRDLRIPLQQQIYDGLRNAILAGQLRAGQ
                     RVPSTRALATDLGVSRLPVLNAYDQLLHEGYLEGRIGSGTFVSVSLPDDALRSVSPSQ
                     SRRSIKHSLPQSARTQPSSHPPPRQRDDGGMRPFRVSLPALDQFPHTIWSRLVARHAR
                     SLTPARMAYGDPAGVGSFRAAVAEHLRTARAVRCEAEQVLIVSGSQAALCICAAVLLG
                     RGDVVAMEEPGYPGARAALATRGAAIAPVPIDHEGIQIESLDALGSRVRAAYVTPSHQ
                     YPMGTAMSATRRLELVEWATRRSAWILEDDYDSEFRYVSRPLGALQGMDAHERVIYIG
                     TFSKVLFPSIRVGYIVVPPSLWSAFVDAREALDIFSPTLYQLALRDFIREGHFARHLR
                     RMRALYLRRRAALLDGLAEHCADRITVHNADAGLHISTLLPDGVDDRAIVRRMRENGL
                     AGDALSVCYSGNARQSGLLLGFGGSDEAGIANATRTLGRILCQNM"
     gene            complement(3382..>3714)
                     /locus_tag="VLI40_02640"
     CDS             complement(3382..>3714)
                     /locus_tag="VLI40_02640"
                     /inference="COORDINATES: protein motif:HMM:NF028226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter dimerization
                     domain-containing protein"
                     /protein_id="HSU96094.1"
                     /translation="QLRAAALEVNGVKDITDLRARWMGHQLYAEASVVVASSLSVGEA
                     HTIAAAVEHQLVHHVPHVSDAVIHVCPAGNVGAEFHGVDPECGDCDAPDRGELVTSTL
                     SPSDRPVR"
BASE COUNT          695 a         1202 c         1081 g          736 t
ORIGIN      
        1 agtgactcgg cgccgagcag tgacgatcgc ggcacaccgc cgctcaacgt ccataacatt
       61 ccggttcccg cccacgccat gcagctgaga atgtgacggc ggtccactcc gtccgaggat
      121 ggctcatcat tgaccaggtt ggattcgtgc tgtgagtcgg tgagcccggc gtcgtcctgg
      181 gcccgattgt atgcgctggt catgaggtcc gagaggtgag agttgcgatt acataaagac
      241 ctcgaccgcc gccgatttat tccatcgagg actcccggcc cctctaccgc acaaggttta
      301 tcgccatcac cggcgtaacc gagcctgccg aattcctgcc cggcaagatc cttcgcactc
      361 cgaggatcac gcctgcgttc ggagtccagt tgtactccac ggccggaatg aatcccaccg
      421 cgtcactcca tcccgatttc atcctgatgt cttgcgagct ctgtccaccg acagagctca
      481 aagcgtcgta tccactgacg ctcgtacctg cgcgctgtcc atagttgagg tccagcgcca
      541 gcacccattt tttcgtcatg ctgtattctg ctgacgcatc ggcgaagaac gagcttccag
      601 gtttcgcatg tccgcgaaac ccggcctctg tgccgtacac gctcacgtcg cgcaccgtcg
      661 cagcattcga gaacgcctgc gacagatcga gtcgcgtacg cagtatccga ccgttcggca
      721 tccagaaata tgtctgcgag tagatcgaca acgtcgtcgc gtacgctccc tggcccagcc
      781 catcgctcgg cctgtcgccc aatcgatcgt actttcccgt cgggaaggtt tcttccacaa
      841 gcgcggagat ggttggcatc cagctgcctt catgaaactg tgtgagccga tactgcgcga
      901 gcaggctcac gtcacccaat ccaacgcgcg agctgctcgg cccgtcgctc gagcccttgt
      961 tcaatttgtt gtaaccaacg acgggaatga acccgagcgc tacgcgatcc gcgagtccat
     1021 acacaaggaa cgcgctcgaa ccgaagctgt tcgcatgggt ggtgtgcaca tcatagaaat
     1081 acggctcgaa cagaacgtgc cccggaggca atgtccccgc gcccgctgcg gcgacggggc
     1141 ccgtccacca tgcgtcgctc agcgactggc gggtactgtc ggggctggcc tgagccgaca
     1201 tgcgcaacgg cagcaacgcc acaagcagac tgcagtagcg cagatatctc agcgccgcat
     1261 gtcgagcgat catcgccgcg tagtcatgcg cgtgaagctc atgatccagt tcgtctccca
     1321 cgtcgtgcca ccgtccgccg agtatgcctg ttcccaacga cacttctccc gcgtgatgca
     1381 cgtccagtag aagcggacgc gaatgctgca ctcttcgaac cgctcctgac tgtagaattc
     1441 gccgtagcca tttcgaaaat caccgatcat catcgggtga tcgagcgtcc cgttgtgagc
     1501 ggtggaccgg tggatcgccc actgtcgcga cgacgggctg tagaggcgca acgcgcgccc
     1561 gcagagccga ccatcggaaa gcctggcatc gagctcttcg aagttggcat ggccatccca
     1621 cagcggccgc tccactgcgg ttccgtcgaa ctcgtaccat tcactcgagc cggacagcgg
     1681 gtggcataac cgccagtgat ggaccctcca cctgccatgc agaaagtcga aatcgtgaga
     1741 tccgtcgcgc agtggagcaa gcacggttgg cgcgaattcc ggagcgatca tcatatgtcc
     1801 atgatcacat tggactggca tgtccaccag cgccatttat tatcttttcg ggatgaccac
     1861 tttggtgata ctccgaccgt gaaagccacc gcgagcccgg agatcgtttc gctcctgccg
     1921 gtcgaccggg atttgcggat tccgctgcag cagcagatct acgacggtct ccgaaatgcg
     1981 attcttgcgg ggcagcttcg tgcgggacaa agggtgcctt ccacgcgcgc gcttgcgacg
     2041 gacctcggtg tgtcgcgcct gccagtcctc aacgcgtatg atcagctttt gcatgagggc
     2101 tatctggaag gccgcatcgg ttccggaacg ttcgtgagtg tctcgttgcc ggacgatgcg
     2161 ctccgctccg tatctccgtc gcaatcaagg cgatccataa agcattcgct accacagtct
     2221 gcgcgcactc agccttcatc tcatccaccg ccacgccagc gcgatgacgg cggcatgcgt
     2281 ccgtttcgcg tcagcctgcc tgcgctcgat cagttcccgc acacgatctg gtcgcggctc
     2341 gtcgctcgtc acgcgagatc gctcacgcca gcccgaatgg catacggcga tcccgccggc
     2401 gtcggctcat tccgggccgc ggtagcagag cacctgcgca cggcgcgcgc ggtacgatgc
     2461 gaggccgagc aggtgctcat agtctccgga tcgcaagcgg cgttgtgcat ctgtgctgcg
     2521 gtgctcctcg gccgcggtga cgtcgttgcg atggaggagc ccggctatcc cggcgcgcgt
     2581 gctgcactcg caacgcgcgg agcggctatc gcgccggttc cgatcgatca tgaaggcatc
     2641 cagatagagt cgctcgacgc gcttgggtcg agagtgcgcg cggcatacgt gacgccgtcg
     2701 caccagtatc cgatgggcac ggcgatgagt gcaacgcgtc gcctggagct cgtcgagtgg
     2761 gcgacgcgac gttccgcatg gatcctcgaa gacgactacg acagcgaatt tcgatacgtg
     2821 agccgtccgc tgggcgcact gcagggaatg gacgcgcacg agcgggtgat ttacatcggc
     2881 acattcagca aggtgctgtt tccgtcgatc cgtgtcggct acatagtagt tccgccttcg
     2941 ctatggagcg ccttcgtcga tgcgcgcgag gcactcgaca tattctcgcc tacactctat
     3001 cagctcgccc tcagggattt catccgcgag ggtcacttcg cgcggcatct ccgtcgcatg
     3061 cgcgcgttgt atctgcgccg gcgcgctgca ttgctggatg ggctcgccga gcactgcgcc
     3121 gatcgtatca ccgtccacaa tgcggatgcg ggtctgcata tctcaacgct gctgccggac
     3181 ggcgtcgatg atcgtgcgat agttcggcgt atgcgagaga acggtcttgc aggtgatgcg
     3241 ctgtcggtct gctatagcgg caacgcaagg cagagcggat tgttactggg ctttggcgga
     3301 tctgatgaag ctggtatagc caacgcgacg cggacgcttg gaagaatatt gtgtcagaat
     3361 atgtaagcaa tccctggtta cttaccgcac tggcctgtcc gacggcgaca gcgtactggt
     3421 caccagctcg ccccgatccg gtgcatcgca atccccgcac tccggatcca ctccgtgaaa
     3481 ctccgccccc acattccccg cgggacagac gtgaatcacc gcgtcgctca cgtgcggcac
     3541 gtgatgaacc agctgatgct ccacggccgc agcaatggta tgcgcctcgc cgacgctcag
     3601 ggacgacgcg acaacaacgc tcgcttccgc atatagctga tgccccatcc agcgcgcgcg
     3661 cagatcggtg atgtccttca caccattcac ttccagcgcc gcggcacgaa gctg
//
LOCUS       DATIMD010000118         3921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3511149, whole genome shotgun sequence.
ACCESSION   DATIMD010000118 DATIMD010000000
VERSION     DATIMD010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3921
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3511149"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..621
                     /locus_tag="VLI40_02645"
     CDS             <1..621
                     /locus_tag="VLI40_02645"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HSU96095.1"
                     /translation="PAHARLDGILMERAGCIQMIYPEIEDKLVVTIMGACAQELYNLG
                     HRENFFYLQHAMGLASSIGFGLAMHLPHERVIVLDGDGSVLMNLGTFATLARYRPKNL
                     IHIVFDNGSLLSTGGFDSHTTSGITDIAAIARGAGIEHVAAVDTAVDFGEAFIAALER
                     DDLSVIVAKVAAVGPEHYGMDLQLPENAFRFRRWILDRKRAAEQAT"
     gene            618..1769
                     /locus_tag="VLI40_02650"
     CDS             618..1769
                     /locus_tag="VLI40_02650"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSU96096.1"
                     /translation="MTLTHPKYDVDAWRRRIPLLASCIPMNNCSQAPQTDVTRAAAER
                     YLDSWNGSGMDWDAWMTEVALAKAEFARLIGAAQDNIAVFSSVSEAASAVASALPLQG
                     RRTNIVVSDAEFPTVSHVLLAQEQRGARVSWAPIGDGADMSAYDALIDDRTALVSACH
                     AYYMNGLIQDSARIAGIARDAGALSFVDAYQSLGTIPIDVRALGVDFLASGNLKFLMG
                     IPGIAFLYVRPEIVDTLHPSVTGWFGRADPFAFDARSLDWSPTASRFDTGTPPVINAY
                     IARAGMEIINAIGPANIRAWLVELGQRLIDGGRARGLVLHGSGDMRRKTATAAFIVRD
                     SHAVEHAMRERSVIASARGDVIRLAPHFYSTTDDVDRALDVLAEVVRTA"
     gene            1766..3103
                     /locus_tag="VLI40_02655"
     CDS             1766..3103
                     /locus_tag="VLI40_02655"
                     /inference="COORDINATES: protein motif:HMM:NF037979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HSU96097.1"
                     /translation="MSETRETFSSRFGGLMTIVGVSIGLGHVWRFPYMVGKFGGAAFV
                     LFYTLVSVVIGVPALMAEFALGRHTRRGPVGAFQRGGLPYGKYVGWFLFFVVTAATGY
                     YSAVIGWVLYYTVGQVAALAHIPFDAAAILPPEHGFILKSFLLQLVCTGIVLLACALV
                     VLKGVRKGIEVVSIIVLPAMTIVTILVMVRTLTLPNAMAGVRWYLLDFRFSDLTANVM
                     AAAIGHAIFALSLGGTFMVVYGSYLHADEPLARPAIWTVIGDTGSSLIAGLAVIPAVF
                     SFGLQPASGPGLIFDTLPRVFAAMPAGWLFGALFFISLFGAGYLSDIGAVEVLVAGLT
                     DNTRLTRTRSVWVMSAACFILAIPPSINNAVFVPWDLTFGSGMQTLGSLLAVVTVAWC
                     LNRAAALKELFGAGEEPVPMWVFYWIRFGIPVIILGVGVYWLLSQVFGTISGI"
     gene            3161..>3921
                     /locus_tag="VLI40_02660"
     CDS             3161..>3921
                     /locus_tag="VLI40_02660"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HSU96098.1"
                     /translation="MPILADLVAALDSGALKVVDLSQPLGPDTPVIGLPPMFAQSPGV
                     TMEEVSHYDEKGPAWYWNIIHMGEHTGTHFDAPVHWVTGKDFPNNRCDTILPRRFIGP
                     ACVIDVTADVAKNEDFLLMPEHVEAWEAQHGRIPSGAWVLLRTGWSKRKDPVAFLNVK
                     EDGAHSPGFHKSTSELLAKDRDVLGVGVETVGTDAGQAGKFDPPFPNHTTMHGNGKFG
                     LASLCNLDQLPATGAVVIAAPLKIVNGSGSPLRVLG"
BASE COUNT          674 a         1165 c         1257 g          825 t
ORIGIN      
        1 cctgctcacg cgcgacttga tggaatcctg atggaacgcg ccggctgcat ccagatgatc
       61 taccccgaga tcgaggacaa gctcgtggtg accatcatgg gcgcgtgcgc gcaggaactg
      121 tataacctcg gccaccgcga gaatttcttt tatctccagc acgcgatggg gcttgcctcg
      181 tcgatcgggt tcgggctggc gatgcacctt ccgcacgaac gtgtgatcgt gctcgacggc
      241 gacggctcgg tgctcatgaa cctcggcact ttcgccacgc tcgcgcgcta cagaccgaag
      301 aatctcattc atatagtgtt cgataacggc agcttgctct ccaccggcgg attcgattcg
      361 cacacgacgt ccggtataac cgacattgcc gcgatcgcgc gcggtgcagg catcgagcac
      421 gtcgcggcag tggatacggc tgtcgatttc ggtgaagcgt tcatcgccgc actcgagcgc
      481 gacgatctga gcgtcatcgt cgcaaaggtc gccgcagtcg gccccgagca ttacgggatg
      541 gatctgcaac ttccggagaa cgcgttccgt ttcaggcgct ggattctcga tcgcaaacgc
      601 gccgcggaac aagccacgtg acgctaaccc atccgaagta cgacgtcgat gcatggcgtc
      661 gacgcattcc gttgctcgcg tcgtgcattc cgatgaacaa ctgctcgcag gcaccgcaga
      721 ccgatgttac acgtgccgcc gccgaacgct atctcgattc atggaacggc agcggcatgg
      781 actgggacgc ctggatgacc gaggtggcgc ttgccaaagc agaattcgcg agactcatcg
      841 gcgccgcgca ggacaacatc gcggtgttca gctcggtctc cgaagcggcg agcgcagtcg
      901 cgagcgcgct ccctctgcag gggcgtcgca cgaacatcgt cgtgagcgac gccgagtttc
      961 cgacggtgtc gcacgtgttg ctggcacagg agcagcgcgg cgcacgcgtg tcgtgggcgc
     1021 cgatcggcga cggcgcagac atgtctgcgt atgatgcgct catcgacgac cgaaccgcac
     1081 tagtatcggc atgtcatgcc tattacatga acggtctcat tcaggattcg gcgcgcatcg
     1141 ccggcatcgc acgcgacgct ggcgcactgt cgttcgtcga cgcgtaccag tcgctcggca
     1201 ccattcccat agacgtacgc gcactcggcg tggattttct cgcgtcggga aatctcaaat
     1261 ttctcatggg cattcccggt atcgcatttc tgtacgtgcg accggagatc gtcgacacgc
     1321 tgcatccgag cgttaccggc tggttcggtc gcgcggaccc gttcgcattc gacgccagat
     1381 cgctcgactg gtctccaacg gcaagccggt tcgatacggg tacgccgccg gttatcaacg
     1441 cgtacatcgc gcgtgcaggt atggagatca taaacgcgat cggtccggcg aacatccgcg
     1501 cctggctcgt cgagctgggg cagcgcctga tcgatggcgg tcgcgcgcgc ggactcgtgt
     1561 tgcacggatc gggcgacatg cggcgaaaga ccgcgacggc tgcattcatt gttcgcgatt
     1621 cacatgctgt ggagcacgcg atgcgtgagc gcagtgtgat cgcttcggcg cgcggcgacg
     1681 ttatccggct cgcaccgcat ttctattcga ccacggatga cgtcgatcgc gcgctggatg
     1741 tgctcgctga agtagtccgc accgcgtgag cgaaacgcgc gaaacattct catcccgctt
     1801 cggcgggctg atgacgatcg tgggtgtgtc gatcggactc ggccacgtat ggcgctttcc
     1861 gtacatggtt ggaaagttcg gtggcgcagc gttcgtgctc ttctacacac tcgtctcggt
     1921 cgtgatcggc gtgccggcgt tgatggccga gttcgcgctc gggcgtcata ctcgacgcgg
     1981 accggtgggc gcattccagc gcggcggcct tccgtatggc aagtacgtcg gatggttcct
     2041 gttcttcgtc gtcaccgcag ccaccggtta ctactcggca gtgatcggct gggtgctcta
     2101 ctacaccgtg ggccaggtcg cagcgctggc gcacattccg ttcgatgctg cggcaatcct
     2161 gccgccagag cacggcttca tattgaagtc gttcctgctg cagctcgtct gcaccggtat
     2221 cgtcctgctc gcgtgcgcac tggtcgtgct caagggagtg cgcaagggaa tcgaggtcgt
     2281 gagcatcatc gtgctgccgg cgatgacgat cgtgaccatc ctcgtgatgg tccgcacgct
     2341 gaccctgccc aatgcgatgg ctggtgtgcg ctggtacctg ctggatttcc gcttctccga
     2401 tctcaccgcg aacgtcatgg ctgcggcgat cgggcatgcc atcttcgcac tgtcgctcgg
     2461 cggcacgttc atggttgtgt acgggtccta tctgcacgcg gatgagccgc tggcacgtcc
     2521 cgcgatctgg acagtgattg gagataccgg ctcgtcgctc atcgcgggtc tcgcggtgat
     2581 tcccgcggta ttctcgttcg gtctgcagcc cgcatcgggg ccgggactca tcttcgatac
     2641 gttgccgcgg gtgttcgcag cgatgccggc gggctggctg ttcggcgcac tcttcttcat
     2701 cagcctgttc ggtgccggct acctgtcgga catcggtgcg gtggaggtac tggtcgccgg
     2761 actcacggat aacacgcggc tcacgcgtac gcgttccgta tgggtgatgt cagcggcatg
     2821 tttcattctg gcaattccgc cgagtatcaa caatgcggtg ttcgttccgt gggatctcac
     2881 gttcggatcg gggatgcaga cgctcgggtc gctacttgcg gtagtgaccg tcgcgtggtg
     2941 tctcaatcgt gcagcggcgt tgaaggagct gttcggcgcc ggcgaggagc ctgtgccgat
     3001 gtgggtcttt tactggattc gatttggcat accagtgatc atacttggcg tcggcgtgta
     3061 ctggctgctg tcgcaggtgt tcggcaccat cagtggtatt tgacgcgcgc cgtgcgtcgt
     3121 agtttgttga tggagaaccc ttttccatag agattgatca atgcccatac tcgccgatct
     3181 cgtcgccgct ctcgattctg gtgcgctcaa agtggtagac ctgtcgcagc cactcggccc
     3241 ggacacaccg gtgatcgggc tgccgcccat gttcgcgcag tctcccggcg tgacaatgga
     3301 agaggtctcg cactacgatg aaaagggacc ggcctggtac tggaacatca ttcacatggg
     3361 tgaacacacc ggcacgcact tcgacgcacc tgtgcactgg gtcaccggca aggactttcc
     3421 caacaaccga tgtgacacga ttctgccgcg ccgctttatt ggtccggcgt gcgtgatcga
     3481 tgtgactgct gatgtcgcga agaatgaaga ttttctgttg atgccggagc acgtggaggc
     3541 gtgggaggcg cagcatggca ggattcccag cggagcctgg gtgctgctac gcacggggtg
     3601 gagcaagcgc aaggatccgg ttgcattcct caacgtgaag gaagacggcg cgcacagccc
     3661 gggctttcac aagagcacgt ccgagctgct ggcaaaggac cgcgacgtac ttggcgtcgg
     3721 cgtggagaca gtcggcaccg acgcgggaca ggcagggaag ttcgatccgc cgtttccgaa
     3781 ccacaccact atgcatggga acgggaagtt cggattggcg agcctgtgca atctcgatca
     3841 gctgccggcg acaggcgcgg tggtgatcgc ggcgccgctc aagattgtga acgggagcgg
     3901 gagtccgttg cgggtgttgg g
//
LOCUS       DATIMD010000119         4211 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4668730, whole genome shotgun sequence.
ACCESSION   DATIMD010000119 DATIMD010000000
VERSION     DATIMD010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4211
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4668730"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VLI40_02665"
     CDS             <1..226
                     /locus_tag="VLI40_02665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96099.1"
                     /translation="KAGVNAPPITYMIAGRQYVAVASGGNLPLDSIRGDELLVFALPT
                     TGSQGAASATRTGDTTGTTGASGTTRAAPR"
     gene            223..825
                     /locus_tag="VLI40_02670"
     CDS             223..825
                     /locus_tag="VLI40_02670"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HSU96100.1"
                     /translation="MIIAARVVILVAAVGGTAIIAPRTARGQEGRPQVSRQPAKKPNG
                     KIETNEDLQPTVLPPLPPGMTLDMIREGDQLFHTKGGCFVCHGSEGQGMPAAGDAITN
                     SLSYVQHDWRQIDSLITAGLPDAYTRSPIAMPPRGARSDLTDAEIQRIAAYVWAISAV
                     RGEPWPGGHVTHDSLTSVAAPSGTAPHPQPQPVPRKPPVQ"
     gene            839..1786
                     /gene="coxB"
                     /locus_tag="VLI40_02675"
     CDS             839..1786
                     /gene="coxB"
                     /locus_tag="VLI40_02675"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HSU96101.1"
                     /translation="MNQLPGGIPNMLAPRGIAAQHLATLGWVLIVISLIVLALVLIAL
                     LVPLARTRQTDVQDEPGYNAREHTFVLVIGAAIPALILLGVYLYSMKDIGLWEFGSHS
                     TADVQVIGHQFWWEVRYPKLGIRTANEIYIPSGTRVRIALTSSDVIHSFWVPQLHGKL
                     DLIPGQVNRFWIEADSAGRYRGECAEFCGPQHTHMDFTVVAVPKGDFSRWAAEQRQPA
                     GPPADPPAIEGQHAFQQAGCAACHTVNGNGADGRFGPDLTHFASRLTIGAGMMPNTRG
                     ALAGWVVGAQHLKPGSLMPNMPMSGEELQAVLAYLEGLR"
     gene            1795..3705
                     /gene="ctaD"
                     /locus_tag="VLI40_02680"
     CDS             1795..3705
                     /gene="ctaD"
                     /locus_tag="VLI40_02680"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit I"
                     /protein_id="HSU96102.1"
                     /translation="MGATAQTEPLGERLASLWNTPRTIMGALTTVDHKTLGKRYLITA
                     FVFLCLGGIEAAIMRAQLARPGEHLLSPEAYNQLFSMHGTTMMFLYAAPVLSGFSNYF
                     VPLLVGSRDLAYPRLNAFSYWIFLFAGVFLYSSFLVGAAPNGGWFNYVPLTTRSYDPG
                     LNIDFYNISLIFLTVSTTVGAVNFIVTILRMRAPGMTLGRMPIYLWSTLSISAVILFS
                     LPALTGACLMLELDRRFNTRFFDPSGGGSSLLWQHLFWAFGHPWVYVVVLPGFGIVSM
                     ALPVFARRRLAAFEYVAMSTVAIAIIGFGVWAHHMFATGMPVVGMGFFSAASMIIVLP
                     SGISVTAWLLTSWTGRPVYTTSYLFILGFLVIFVIGGLSGVITGIVPFDWQIHDTYFV
                     VGHLHYVLIGANLFPVVAGVYYWFPKMTGRLMSERIGKWSFWLMFIGFNVGFFPMHIA
                     GILGMPRRVYTFYEGMGLDTINMVETIGAYLFAIGVLVFIINVILSARHGPLAGADPW
                     NGATLEWSTPSPPPSYNFDVIPIVTTRDPLWDEPLDNIRGGRDDPSRTLTTGRETLTT
                     SVMHAHPVGILHMAEDSIWPLILALSLTVLSYSLLLDAKVVSTIAGIAALVSIGGWFW
                     PAHVREPEGSVS"
     gene            3702..>4211
                     /locus_tag="VLI40_02685"
     CDS             3702..>4211
                     /locus_tag="VLI40_02685"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HSU96103.1"
                     /translation="MTAPESIPVATDIGALGRRDLAWWGMALFIATEATLFVYLIAGY
                     FYVGGSKPIWPPVKPSIQITGINTILLLLSSGSAIVADRSVKRGRNGALRVWLLVTIV
                     LGAVFLTLQIHEYGTLAFHPQTDVYGSFFYLITGLHGAHVAAGILMLVYVLVRAFAGH
                     FDSVHNYAVR"
BASE COUNT          769 a         1308 c         1251 g          883 t
ORIGIN      
        1 aaaggccgga gtgaacgcgc cgccgatcac ctacatgatc gctggccgcc agtacgtcgc
       61 agtcgcgtcg ggcggtaatc tgccactcga cagcattcgt ggcgatgagt tgctggtctt
      121 cgctcttccg acgactggtt cgcaaggtgc cgcaagcgct acaaggactg gagacacaac
      181 aggcactacg ggcgcttcag gcactacgcg cgcggcgcca cgatgatcat cgctgcgcgc
      241 gttgtcattc tcgtcgccgc tgtcggcggt actgcgatca tcgcaccacg taccgcacgt
      301 ggtcaggagg gacggccgca ggtctcgcgt cagccggcga agaaaccgaa cgggaagatc
      361 gaaacgaacg aggatctcca acccacggtt ctgccgccac tgccgcccgg aatgacactc
      421 gacatgatcc gcgagggaga tcagttattc catacgaaag ggggctgctt cgtctgtcac
      481 ggctctgaag ggcagggaat gcccgcggca ggcgatgcaa ttacgaattc gctttcgtat
      541 gtgcagcacg actggcggca gatcgactcg ctcatcaccg ccggtctccc cgatgcgtac
      601 acgcgcagtc cgatcgcgat gccgccacgc ggtgcgcgaa gcgatcttac cgacgccgag
      661 atccagcgca tcgcggcgta tgtgtgggcg ataagcgcgg tcaggggaga gccatggccc
      721 ggcgggcacg tcactcatga ttctctcacg agcgtggcgg ctccatcggg tacggcaccg
      781 catccgcaac cgcagcctgt gccgcgaaag ccacccgtgc aatgaatgag ctacgggcat
      841 gaaccagcta ccgggcggaa tccccaacat gctcgcgccg cgcggcatcg cggcgcaaca
      901 cctggcgacg ttggggtggg tgctcatcgt catctcgctc attgtactcg cgctcgtatt
      961 gatcgcgctg ctcgtcccgc tcgcgcgcac gcggcagacc gacgttcagg atgagccagg
     1021 atacaacgcg cgggagcaca ctttcgttct cgtgataggc gccgcgatcc ccgcgctcat
     1081 actgctcggt gtgtatctgt attcaatgaa ggacatcggc ctgtgggaat tcggaagtca
     1141 ctcaaccgcg gacgtccagg tgatagggca tcagttctgg tgggaagtgc gctatccaaa
     1201 gctcggcatt cgcaccgcca acgagatcta cattccgtca ggcacgcgcg tgcggatagc
     1261 gctgacatct tccgacgtga ttcactcgtt ctgggttccg cagctgcacg gcaagctcga
     1321 tctcattcca ggacaggtga accgcttctg gatcgaagcc gacagcgccg gcagatatcg
     1381 tggcgaatgc gcggagttct gcggcccgca acacactcac atggacttca cggttgtcgc
     1441 cgtgccgaag ggcgattttt cgcgctgggc cgcagagcag cggcaacccg cgggcccacc
     1501 cgcagatccg cccgcgatcg aaggccaaca cgcgttccag caggccgggt gcgcggcatg
     1561 tcacaccgtg aatggcaacg gcgccgatgg acgttttggt cctgacctca cgcacttcgc
     1621 aagccgtctc accatcgggg cgggaatgat gcccaacacg cgtggcgctc tcgctggctg
     1681 ggtggttggg gcgcagcacc tcaagcccgg tagcctcatg ccgaacatgc cgatgtcggg
     1741 cgaggagttg caggctgtgc tcgcgtatct cgaagggttg aggtaggaga gacaatggga
     1801 gccaccgcac aaacggaacc cctcggagag cgactcgctt cactgtggaa cactccgcgc
     1861 acgataatgg gagcgctcac cacggtagat cacaagacgc tcggcaagcg atatctcatt
     1921 accgccttcg tctttctctg cctcggtggt atcgaagcgg cgatcatgcg cgcgcagctt
     1981 gcgcgacccg gtgagcatct gctttccccg gaagcataca accagctttt cagcatgcac
     2041 gggacgacga tgatgttcct gtacgccgcg ccggttctgt cgggcttcag taattacttc
     2101 gttccgctcc tcgtcgggtc gcgcgacctc gcatacccgc gcctcaatgc attcagctac
     2161 tggatattcc tcttcgccgg agtctttctc tactccagct tcctcgtcgg cgcggcgccg
     2221 aacggtggat ggttcaacta tgtcccgctg accacacgct catacgatcc cggcctcaac
     2281 atcgatttct acaacatctc gctgatcttt ctcacggtat cgacgaccgt tggcgcggtg
     2341 aacttcatcg tgaccattct acgcatgcgg gcaccgggca tgacgctggg ccgcatgccg
     2401 atctatctgt ggagcacact cagcatctcc gccgtaattc tcttttcgct gccggcgctc
     2461 acaggagcgt gtctcatgct cgagctggat cgccgcttca atacacgctt cttcgacccg
     2521 agtggcggcg gcagctcatt gttatggcaa catctcttct gggcgttcgg ccatccatgg
     2581 gtatacgtgg tcgtccttcc cggtttcgga atagtgtcca tggccttgcc cgtgttcgcg
     2641 cgcagacgac tcgcggcgtt cgagtacgtc gcgatgtcca ccgtcgcaat cgcgatcata
     2701 ggatttggcg tctgggccca ccacatgttc gccacgggga tgcccgtggt cggaatggga
     2761 ttcttcagcg ccgcaagcat gataatcgtt ctgccgagcg gaatatccgt aaccgcatgg
     2821 ttacttactt cctggaccgg aaggccggtc tacacgacca gctatctctt catcctcggc
     2881 tttctcgtga tcttcgtgat cggcggactg agcggagtca taacgggcat cgtcccgttc
     2941 gactggcaga tacacgacac gtatttcgtc gtcggacatc tgcattacgt gcttatcggt
     3001 gcgaatctct ttccggtagt tgcgggcgtt tactactggt tccccaagat gacggggcgg
     3061 ctgatgagtg agcgcatcgg caagtggagc ttctggttga tgttcatcgg cttcaacgtc
     3121 ggcttctttc cgatgcacat cgcgggaata ctgggaatgc cgcgcagagt gtacacgttt
     3181 tacgaaggca tggggctcga cacgatcaac atggtcgaga cgatcggggc gtatctcttt
     3241 gcgatcggtg tactggtctt cataatcaac gtcatactga gcgcgcgcca cggtccgctc
     3301 gcgggcgctg atccgtggaa cggcgcaaca ctcgaatggt cgacgccatc gccgccgccg
     3361 agctacaact tcgatgtgat tcctatcgtg acgacgcgcg atccgctctg ggacgagccg
     3421 ctcgataaca tacgcggtgg acgcgacgat ccatcgcgca cgctcaccac cggccgcgag
     3481 acgctgacga caagtgtgat gcacgcgcat ccggtgggaa tcctgcacat ggcggaagat
     3541 tcgatctggc cgctgatact ggcgctgtcg ctcaccgttc tgtcctactc attgctgctc
     3601 gacgcgaagg tcgtttccac catcgccggc atcgccgcgc tggtttcgat cggcggctgg
     3661 ttctggcccg cacacgtgcg tgagcccgag ggctcggtgt catgacagct cccgaatcca
     3721 tcccggtcgc aaccgatatt ggtgcactcg ggcgccgcga tctcgcatgg tgggggatgg
     3781 cgctcttcat cgcgacagag gccacgttgt tcgtgtacct catcgccggt tatttctacg
     3841 tcggcggctc gaagcccatc tggccgccgg tcaagccgag tatccagata acagggatca
     3901 acacgattct gctgttgttg agcagtggct ctgcgatcgt tgcggatcgc tccgtgaaac
     3961 gcggccggaa cggcgcgctg cgcgtctggt tgctcgtaac gatcgtgctc ggtgccgtct
     4021 tcctcacgtt gcagatccac gagtacggca cgctcgcgtt tcatccgcag actgatgtgt
     4081 acggttcctt cttctatctc atcacgggac tgcacggcgc acacgttgct gccggaattc
     4141 tgatgctcgt atacgtgctg gtgcgcgcct tcgcgggaca cttcgattcg gttcataatt
     4201 acgccgtgag a
//
LOCUS       DATIMD010000120         2674 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2645777, whole genome shotgun sequence.
ACCESSION   DATIMD010000120 DATIMD010000000
VERSION     DATIMD010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2674
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2645777"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1304
                     /gene="argS"
                     /locus_tag="VLI40_02690"
     CDS             <1..1304
                     /gene="argS"
                     /locus_tag="VLI40_02690"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HSU96104.1"
                     /translation="AYGRASDGNNAPVVVEFVSANPTGPLHVGHGRQAALGDAISSLL
                     EWTGWNVSREFYYNDAGVQIDNLELSVRAHIDAKGGEAAIPAGGYHGDYVREIALRYD
                     ASADEAVREFAVRALRAEQDLDLQAFGVKFDTYYLESSLYTDGKVQQAVDRLVANGQT
                     YESEGALWLRTMQYGDDKDRVMRKSDGTYTYFVPDVAYHLTKWERGFTRAVNVQGADH
                     HGTTTRVRAGLRALNMGIPEGYPEYVLHQLVTVVKEGEEVKISKRAGSYVTVRDLIDW
                     VGRDAVRFFFLMRKGDSPLIFDVDLARRQSDENPVYYLQMAHARMSGIFRVGEIDASK
                     MDISAVDLSVLHEPEEQALIKQLIDFPAEVRGAAAALEPHRITSYALETARLAHLWYH
                     KHHVLGEPAPIMSARLALARAAQIVIRNTLHLLGVAAPERM"
     gene            1357..2274
                     /locus_tag="VLI40_02695"
     CDS             1357..2274
                     /locus_tag="VLI40_02695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HSU96105.1"
                     /translation="MSVLVVGSVALDSVETPFGKADDVLGGSATFFSAAASHLTDVQI
                     VGVVGNDYPMDRLRQLEKRNVDLGGIEQVDGSSFRWRGRYRHDLNSAETLETHLGVFS
                     NFEPKIPARFAKPDFLFLANIDPRLQLAVLKQVERPRLVASDTMNFWIESRRPELIEL
                     LQHVDLLTLNDAEARQLTEQSNLVQAARWIMAHGPKHVIIKKGEHGAFLFRENNIFFA
                     PAYPLESVFDPTGAGDSFAGGFIGYLARTGDLSEANMRRAVIYGSAMGSFAVEKFSIE
                     RLMTVTREELDERLHAFKQLVAFEEEVSA"
     gene            2271..>2674
                     /locus_tag="VLI40_02700"
     CDS             2271..>2674
                     /locus_tag="VLI40_02700"
                     /inference="COORDINATES: protein motif:HMM:NF012795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase related protein"
                     /protein_id="HSU96106.1"
                     /translation="MTSDPRATASDTNTPLDYRAAGVDIDASDDAKRRIRKLVESTYT
                     AGVRGAFGAFGGMFRVPTDVVKPLLVASADGVGTKTKVAIEAGRHDTVGHDLVNHCVN
                     DILVQGAKPLFFLDYVAFGKLEPTIVEAVVSGV"
BASE COUNT          505 a          793 c          861 g          515 t
ORIGIN      
        1 aggcgtacgg ccgtgcgtcc gacggaaaca acgcgcctgt cgtggtcgag ttcgtgtcgg
       61 cgaatccaac cggaccgctg catgtaggcc acggacgcca ggccgcgctc ggcgacgcca
      121 tatcgtcgtt gctcgaatgg accggctgga acgtatcgcg cgagttctat tacaacgatg
      181 cgggcgttca gatcgacaat ctcgagctta gcgtgcgcgc gcacatcgac gcgaagggtg
      241 gggaggccgc gataccggcc ggcggatacc atggcgacta cgtgcgcgag attgcgcttc
      301 gttatgacgc cagcgcggat gaagctgtgc gggagtttgc cgttcgcgcg ctgcgtgcgg
      361 agcaggacct tgaccttcag gcgttcggtg tgaagttcga cacatactat ctggagtcga
      421 gtctctacac cgatggcaag gtgcagcagg cggtggaccg gctcgttgca aacggacaga
      481 cgtacgagag cgagggcgcg ctgtggctgc gcaccatgca gtacggcgat gacaaggacc
      541 gcgtgatgcg gaagagcgac ggaacgtaca cgtatttcgt tccggacgtc gcatatcatc
      601 tcaccaagtg ggagcggggc ttcacgcgcg cggtcaacgt gcagggcgcc gatcaccacg
      661 ggactacgac tcgcgtacgc gccggactgc gcgcgttgaa catggggatt ccggaaggct
      721 atccggagta tgtgttgcac cagctcgtga cggtcgtgaa ggaaggtgag gaagtcaaga
      781 tctccaagcg ggctggaagc tacgtgacgg ttcgcgatct cattgactgg gtgggacgcg
      841 acgcagtccg tttcttcttc ctcatgcgaa agggcgacag cccgctgatc ttcgacgtcg
      901 atcttgctcg ccggcaatcc gatgagaatc cggtttacta cctgcagatg gcgcacgcgc
      961 gcatgagcgg catctttcgc gtcggtgaga tcgatgcgtc gaagatggat atctccgcgg
     1021 tcgacctcag cgtgctgcac gagcccgaag aacaggcgct catcaagcag ctgatcgatt
     1081 tcccggccga agtacgtggc gcagccgcgg cgctggaacc gcatcgcatt acgtcgtacg
     1141 cactcgagac cgcacgtctc gcgcacctgt ggtaccacaa gcatcacgtg ctcggtgagc
     1201 ctgcgccgat catgtcggca cgtctcgcgt tggcccgcgc tgcgcagatc gtgatccgca
     1261 acacactgca tctgctcggc gttgcagcgc cggagcgcat gtgaccgcca gcgtgatacc
     1321 atacgtcacg ctgcccatta ctctcacaca actctgatgt ccgttctcgt cgttgggtcg
     1381 gtcgcgctgg attccgtcga aacgccgttc ggcaaggccg acgatgttct cggcggctcc
     1441 gcaactttct tctccgccgc cgcgagtcat cttacggacg tgcagatcgt cggcgtagtc
     1501 ggtaacgact atccgatgga ccgtctgcgt cagctcgaga aacgcaacgt cgacctgggc
     1561 ggcatcgagc aggttgacgg gagctcgttc cgctggcgtg ggcggtaccg tcacgacctc
     1621 aattccgccg agacgctgga gactcacctc ggcgtgtttt cgaatttcga gccgaagata
     1681 cccgcgcgct tcgccaaacc ggactttctc ttcctcgcga acatcgatcc gcggctgcag
     1741 ctcgccgtac tgaagcaggt cgagcgcccg cgcctcgtcg cgtcggatac gatgaatttc
     1801 tggatagaga gccgtcgtcc cgagctgatc gagctgctgc agcatgtgga tctgcttact
     1861 ctgaacgacg cggaggcgcg ccagctgacc gagcagagca acctcgtgca ggccgcgcgc
     1921 tggatcatgg cgcacgggcc gaagcacgtt atcatcaaga agggcgagca tggtgccttt
     1981 ctgttccgtg agaataacat tttcttcgcg ccggcgtatc cgttggagtc ggtgttcgat
     2041 ccgacaggcg ccggcgactc gtttgcgggc ggcttcatcg gctaccttgc gcgcacgggc
     2101 gacctgagcg aggccaacat gcgacgcgcg gtgatatacg gctctgcgat gggctcgttc
     2161 gcggtggaga agttctcgat cgagcgactg atgacagtta cgcgcgagga gctggacgag
     2221 cggctgcacg cattcaagca gctcgtcgcc ttcgaggagg aagtgagcgc gtgacgagtg
     2281 acccgcgcgc gactgcgtcc gataccaaca cgccgctcga ctatcgcgcg gccggtgtcg
     2341 acatagatgc gagcgacgat gccaagcgcc ggataaggaa actggtcgag tcgacctata
     2401 cggctggcgt gcgcggtgca ttcggagcgt tcggcggaat gtttcgtgtc ccgacagacg
     2461 ttgtgaaacc gctcctcgtc gcatccgcgg atggtgtcgg tacaaaaacc aaagttgcga
     2521 tcgaagccgg gcggcacgac acggtcggac acgacctcgt caatcactgt gtcaacgaca
     2581 ttctcgttca gggcgccaag ccgctcttct ttctcgacta cgtcgcgttc ggaaagctgg
     2641 agccgacaat cgtagaagcc gtggtgtctg gtgt
//
LOCUS       DATIMD010000121         6225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4669588, whole genome shotgun sequence.
ACCESSION   DATIMD010000121 DATIMD010000000
VERSION     DATIMD010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6225
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4669588"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(113..2536)
                     /locus_tag="VLI40_02705"
     CDS             complement(113..2536)
                     /locus_tag="VLI40_02705"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019829 - ATPase-coupled monoatomic cation
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HSU96107.1"
                     /translation="MANATTVEPVERDRVAASVDRSAIRIPVSGMTCAACQSHVQRAL
                     ESEPGVIDASVNLMMNSADVSYDPAVVTPDRLVAAIVDSGYGAELASPDQTAFEEQEA
                     REEAQTEEFRDLRLKAIVSGIVAVIAMLLSMPLMQANAMVVHGPVADPFMRWVMTSLT
                     PALQTVAPWAYAIDPQVLSYGLLVVTLGIMVWAGRRFYTGAWNGLRHRTSDMNTLIAV
                     GTGAAFIYSTIATVAPGFFISHGVAPDVYYEAVVFIIALILTGNAFEARAKRQTAGAL
                     RALVDLQPKNARVLRGGEEVDVPVESIQHGETIVVRPGERVPVDGQIISGHSAVDESM
                     LTGESLPVEKTAGDRVIGGTINRTGSFRYAATSLGQNSVLAQIVRLMRDAQSSRAPIQ
                     RLADRVSAVFVPVVIALAVVTFIVWFAVVSAHGGPAPLVRAFAASVAVLIIACPCAMG
                     LAVPTAVMVASGRGAALGILIKGGEALQRAADVTTVVLDKTGTVTEGRPSVTDVVLRP
                     ADDGGAAIDRVEFLRLVASIEAQSEHPLAEAILQYAREQNVRGTTPEAFQSVTGQGAL
                     GSVGGTAVIVGNETLMREYAMDVTSLRPDAQQLSDDGKTSIYVAIDGRLSGLIAVADR
                     VRDTSREAIASLRQMGLEVAMLTGDDQRTADAVARTAGISRVVAGVLPDGKVAEIIRL
                     QSAGDIVAMVGDGINDAPALSQADISFGIGTGTDIAMEAADVVLMRGDLRSVVDAIRL
                     SRRTLATMKQNLFWAFIYNVVGIPIAAGVLYPAFGILLSPILASAAMAFSSVSVVSNS
                     LRLRHARIA"
     gene            complement(2549..2788)
                     /locus_tag="VLI40_02710"
     CDS             complement(2549..2788)
                     /locus_tag="VLI40_02710"
                     /inference="COORDINATES: protein motif:HMM:NF012621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HSU96108.1"
                     /translation="MTAPTANHDKSLVLDITGMSCNHCVARVKKAIDSLPGVHRSEVE
                     IGRASVSFDPSAVSVDDLTAAVTHAGYPARAEGAA"
     gene            complement(2938..4305)
                     /locus_tag="VLI40_02715"
     CDS             complement(2938..4305)
                     /locus_tag="VLI40_02715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HSU96109.1"
                     /translation="MTLTSTEPELDPDDTGVRKHGWKRLSIIPSLPEVNRSIHVPGKQ
                     YIWRRALAFAGPGYLIAVGYMDPGNWATDIAAGSLYNYSLLSVVLIANFIAIFLQALS
                     AKLGIVSERDLAQACRDAYSRPVSIGLWLSAEIGIIACDIAEVLGAAIALNLLFHLPL
                     VWGVALTALDVLIVLALQNKGFRLIEAFVVTLIITMMVIFGFEIAYSRPDWAATMRGF
                     IPTSQIVTDPKMLYIALGILGATVMPHNLYLHSSIVQTRRHGRSTSDLRDALKYSYTD
                     STVALMLALFVNAAILIVSAATFYRTGHHEVGEIQDAYKLLSPLLGVAVATPLFAVAL
                     LASGQNSTLTGTLAGQIVLEGFTEFRIPAWLRRMISRMLAIVPSIFVVAWYGDRGIGA
                     LLLFSQVILSAQLSFAVIPLVQFTSDRTKMGEFVNGTVTKCIGWGLAVLIAGLNAYLI
                     VTALK"
     gene            complement(4302..4976)
                     /locus_tag="VLI40_02720"
     CDS             complement(4302..4976)
                     /locus_tag="VLI40_02720"
                     /inference="COORDINATES: protein motif:HMM:NF014762.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HSU96110.1"
                     /translation="MLSPSVEDYIKAIYKARSDKGSITTQDLADRLGVSAPAVSKMMR
                     RLTELRLISHAPYQAVELTDAGEKMALEIIRHHRLLELYLVQAMGFTWDNVHEEAERL
                     EHHISEEFEDRIDELLGHPAACPHGDPIPTRTGSIARSSNRSLALQREPERLVVQRVS
                     DEDAGLLRHFKSLGVIPGTAFEFVRQEPFEGPLVLRIGGKLVRLTPQAAREVFVDPAL
                     SEDARS"
     gene            5403..>6225
                     /locus_tag="VLI40_02725"
     CDS             5403..>6225
                     /locus_tag="VLI40_02725"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HSU96111.1"
                     /translation="MMQIASHPGMRVPDRLIALTAFTGALALSACTTAPHPIAEFATP
                     TGSPHAVSSSASRAIDWPSYGYDPAGTRFSPASQITPANAHSLTLAWTYRTGETRPEL
                     AAKNRAEFETTPIVIDGVMYLNTPLGRVIALDPTTGSERWVFDAHVDRSVDPGDFASR
                     GVTAWIDAKINRDAPCAMRIFLATVDARLIAIDSRTGKVCDDFGDHGTVDLKRGLRNP
                     PSTDWGEYVETSPPAIIDGLVVVGSSIGDNGRADKPSGEVRAFDARTGVMRWAFDP"
BASE COUNT         1193 a         1973 c         1884 g         1175 t
ORIGIN      
        1 tgaccggctt tccgggtgct tttgcggatg ttttcgtgga tgtttttccg ggtgttttca
       61 tggatgttgg cattgatcaa gttttgttga tgtatttatt taccggctcg tgtcacgcga
      121 ttcgcgcatg gcgcagccgg agactgttgc tcacgacgct cactgagctg aacgccattg
      181 ccgcgctcgc gaggatcgga ctgagcagaa ttccgaaggc cggatagagc actccagccg
      241 ctatcggtat tccgaccacg ttgtatatga acgcccagaa caggttctgc ttcatcgtcg
      301 caagcgtacg gcgcgacaga cggattgcat cgacgacgct tcgcaggtcg ccgcgcatca
      361 acacgacgtc ggccgcttcc atcgcgatgt ccgtacctgt accgatgccg aacgatatgt
      421 ccgcctgact caacgcagga gcgtcgttga tgccgtcgcc gaccattgct acaatgtcgc
      481 cagcggactg caaccgtata atttccgcca ccttgccatc aggcagaaca cccgcaacga
      541 cgcgggatat tcccgcggtg cgagcgactg cgtcggcggt gcgctgatcg tcgccggtca
      601 acatcgccac ttccagtccc atctgacgga gcgatgcgat cgcctcgcgc gacgtatcac
      661 gcacgcgatc cgcgactgcg atgagacctg acagtctgcc gtcgatggcg acgtagatcg
      721 acgtctttcc gtcgtccgac agttgctgcg cgtccggacg caacgacgta acgtccatcg
      781 catactcgcg catcaaggtt tcgttgccga ctatcacggc agtgccacct accgatccga
      841 gcgcgccctg accggtgacg gattgaaatg cttctggtgt ggtgccgcga acgttctgct
      901 cgcgtgcata ttgcagtatc gcttcggcga gcggatgctc ggattgcgcc tcgatcgatg
      961 caaccagcct gagaaactct actctgtcga tcgccgcgcc gccatcgtct gcgggacgca
     1021 ggacgacatc ggtgacggac ggacggccct cggtaacggt tccggtcttg tccagcacga
     1081 ccgtcgtcac gtccgccgcg cgctgcagcg cttcaccgcc cttgatgaga attccgagtg
     1141 cggcaccgcg tccgctcgcg accatgaccg cggtcggcac ggccagtccc atagcgcagg
     1201 gacatgcgat gatgagcacc gcgaccgacg cagcaaatgc gcgcaccaga ggtgcagggc
     1261 cgccgtgtgc actcacgacc gcaaaccata cgatgaacgt cacgaccgcg agcgcgatca
     1321 ctaccgggac gaagaccgcg ctcacacgat cggcaagccg ctggatcgga gcacgcgagc
     1381 tctgtgcgtc gcgcatcaat cgcacgatct gagcaagcac actgttctgg ccgagcgacg
     1441 tcgcagcgta gcggaagctt ccggtacgat tgatggtgcc gccgatcacg cgatcgccgg
     1501 cggtcttctc gaccggcaac gactcaccgg tcagcatcga ttcgtccacc gcactgtgac
     1561 cggagatgat ctgcccgtcg accggaacgc gctcgcccgg gcgcacgacg atcgtctcgc
     1621 catgctggat cgactcgacg ggaacgtcca cctcttcgcc gccccgcaga acgcgggcgt
     1681 tcttcggctg gagatcgacg agtgcgcgca acgctcccgc agtctgacgc ttcgcacgcg
     1741 cttcgaacgc gttgcccgtg agaatcagcg cgatgatgaa gacgacggct tcgtagtaca
     1801 cgtcgggcgc aacaccatgg ctgatgaaga atccgggcgc gaccgttgct atcgtcgaat
     1861 agatgaacgc cgcgccggta ccaaccgcga tcagcgtgtt catgtcggac gtacgatgac
     1921 gcagcccgtt ccacgctccg gtgtagaagc ggcgccccgc ccacaccata atcccaagcg
     1981 tgacgaccag caggccgtac gagagcacct gcggatcgat cgcgtacgcc cacggtgcca
     2041 cggtctgcaa cgcgggcgtg agcgatgtca tcacccagcg catgaacgga tcggcaaccg
     2101 gaccatgcac taccatcgcg ttggcctgca tcaacggcat cgacagcagc atcgcgatta
     2161 cagcgacgat tccactcact atcgccttga gacgcagatc gcgaaactcc tcggtctgcg
     2221 cctcctccct cgcctcctgc tcctcgaacg ccgtctgatc cggcgacgcg agctcggcgc
     2281 cgtacccgga atcaacaatt gcggcgacga gcctgtcagg cgtgacgacc gccggatcgt
     2341 agctcacgtc ggcgctgttc atcatgagat tcacggacgc gtcgatgaca ccgggctcgc
     2401 tctccagcgc gcgctgcacg tgcgactggc acgcggcgca ggtcatgccg gatacgggta
     2461 tacggatcgc gctgcggtcg acactggcgg ccactctgtc gcgctctacg ggttctacag
     2521 ttgtcgcatt tgccatgatc gtagcgtcct acgccgcgcc ctcggcgcga gcgggataac
     2581 cggcatgcgt gacggccgct gtcaggtcgt ccaccgatac cgcagatgga tcgaagctga
     2641 cgctcgctcg gccgatctcg acctcgctcc ggtgaacccc gggcaagctg tcgatggcct
     2701 ttttgacgcg ggcgacacag tgattgcagc tcattcccgt gatgtcgaga acgagcgatt
     2761 tatcgtgatt tgcggtgggt gctgtcatgg ggactccagg ttcggtgaga cataccctgg
     2821 atgggtatct acataaagat agataccccc tacccctatg tcaagcgggc tgaatgtgct
     2881 ccccgtcgga gagcagaatc gggccagcaa ggcggaagcg attggagtac ttcgtcccta
     2941 cttgagcgcc gtgacaatca gatacgcatt gagccccgcg atcagcaccg ccagacccca
     3001 gccgatgcac ttcgtcaccg tcccgttcac gaactcgccc atcttcgtgc ggtcgctcgt
     3061 gaactggacc agcgggatca ctgcaaagga gagctgcgcc gagaggatga cctgactgaa
     3121 cagcagcagc gcgccgattc cgcggtctcc gtaccacgcc acgacgaata tcgacggcac
     3181 gatcgcgagc atccgcgaga tcatccggcg cagccaggcc ggaatgcgga actcggtaaa
     3241 gccttcgagc acgatctgcc ctgcgagcgt tccggtcagc gtggagttct gtcccgatgc
     3301 aagcagcgca accgcgaaca acggtgtggc gaccgcgacg ccgagcaacg gcgacagcag
     3361 cttgtacgcg tcctgaatct cgccgacctc gtggtgacct gtcctgtaga acgtcgcagc
     3421 ggacactatg agaatcgctg cgttgacgaa tagcgcgagc atcagcgcga cagtggaatc
     3481 cgtgtacgaa tacttgagtg cgtcgcgcag atccgaagtg ctccgcccgt gcctgcgtgt
     3541 ctgcacgatg gacgagtgaa gatacagatt gtgcggcatc acggtcgcgc cgagtatgcc
     3601 gagcgcgatg tacagcatct tcggatcggt cacgatctgc gacgtcggta tgaatccgcg
     3661 catcgtagca gcccagtcag gtctcgagta cgcgatctcg aatccgaata tcaccatcat
     3721 cgttatgatg agcgtgacga caaaggcctc gatcagccgg aagcccttgt tctgcaacgc
     3781 gagcacgatc agcacatcga gtgctgtgag cgccactccc cacaccagtg gcagatgaaa
     3841 cagcaggttc agcgcgatcg cggccccgag cacttcggcg atgtcgcacg ctatgatccc
     3901 gatctcggcg gacagccaca ggccgatcga aacggggcgc gaatacgcgt cgcggcacgc
     3961 ctgcgccaga tcgcgctccg aaacaatgcc gagctttgcg gaaagagcct gcagaaagat
     4021 cgcgatgaag ttcgcgatga gaactacaga tagaagcgag tagttgtaca gacttcccgc
     4081 tgcgatgtcg gtggcccagt tgccgggatc catgtatccg acggcaatga gataacccgg
     4141 ccccgcgaac gcgagtgcgc gccgccagat gtactgcttg cccggcacgt ggatcgagcg
     4201 attgacttcg ggaaggctcg gtatgatgct gagtcgcttc catccatgct ttcgtacgcc
     4261 cgtatcgtcg ggatcgagct cgggctccgt cgatgtgaga gtcacgagcg tgcgtcctcg
     4321 ctcagcgcgg gatcgacgaa cacttcgcgc gcagcctgcg gagtgaggcg caccagcttg
     4381 ccgccgatcc gcagtacgag cggtccttcg aacggctcct gtcgaacgaa ctcgaacgcg
     4441 gtgccgggaa tgacgccgag cgacttgaag tggcgcagca agccggcgtc ctcgtcactc
     4501 acgcgctgga ctacgagccg ctcgggctcg cgctgcaacg cgagcgagcg attggagctg
     4561 cgcgcgatgg agccggtgcg cgtcggaatc ggatcgccgt gcggacaggc cgccggatgg
     4621 cccagcagct cgtcgatcct gtcctcgaac tcctcgctga tgtgatgctc cagccgctcg
     4681 gcttcctcgt gcacgttgtc ccacgtgaag cccatcgcct gcacgagata gagctcaagc
     4741 agccggtgat gccggatgat ctcgagcgcc atcttctcgc cggcgtccgt gagctcgacc
     4801 gcctggtagg gggcgtggga gatgagccgg agctccgtca ggcgccgcat catcttgctc
     4861 acggcaggag cgctcacgcc cagccggtcg gccaggtcct gcgttgtgat gctgccttta
     4921 tcgctgcggg ccttgtagat ggcctttata tagtcttcga cggacgggga gagcatcttt
     4981 gtgactattg ccttggacgg atcgatttaa ccttggttaa ttctagttta tacctgaggt
     5041 taagtatcgt caagagtctg ggagatcgtc ctgtgcaggt gtcacatttg attgcatctc
     5101 aagtgacagg cagggatgta tccctttgag tgacaggcag gggtgtattc ttggcccgcc
     5161 agtgcatttt gagtgacagg cagggataca tccctgcccc acctgcgctg gccatcactt
     5221 actcctgcga cgcgacggtg tggaacacgg agcgaccagg acggcgacgg ggtcgcctga
     5281 gtccccgtcc tcccctgcca gtcccttctg tcccaatttc gttgccggcg aattgcggcc
     5341 ccgcgagttt ccccgtaacg ggcgctcgat gagcgcaagg aaactccaac cagacacgac
     5401 tcatgatgca gattgcatct catcccggaa tgcgtgtgcc ggaccggttg attgcgttga
     5461 cggccttcac cggtgcactg gctctatccg cgtgcacaac agcgccgcat ccaatcgcag
     5521 agttcgccac accgaccgga tctccgcacg ccgtaagctc cagcgcttct cgcgcgatcg
     5581 attggccctc ctacggctac gacccggccg gtacgcgatt ctcccccgct tcgcagatca
     5641 ctcctgcgaa cgcgcattca ctcacgcttg cgtggaccta ccgcacaggc gaaacacgac
     5701 cggagctcgc ggcgaagaat cgcgcggagt tcgagacgac tccgatcgtg atcgatggag
     5761 tcatgtatct caacactccg ctgggtcgcg tgatcgcgct cgatcccacg accggctcgg
     5821 agcggtgggt gttcgacgcg catgtggacc gctcggtcga tcccggtgac ttcgccagtc
     5881 gcggcgtcac tgcatggatc gatgcaaaaa tcaatcgcga tgcgccatgc gcgatgcgca
     5941 tcttcctggc gacagtcgat gcgcgtctca tcgcgatcga cagtcgcacc ggaaaggtgt
     6001 gtgatgattt cggcgatcac ggtacggtcg atctcaagcg gggcctgcgc aatccgccga
     6061 gtaccgattg gggagaatac gtcgagacgt cgccgccggc gatcatcgac ggtctggtag
     6121 tcgtcggctc cagcattggg gacaacgggc gtgccgacaa gccgagtggc gaggtgcgcg
     6181 cgttcgatgc ccgtacgggc gtaatgcggt gggcattcga tcccg
//
LOCUS       DATIMD010000122         2989 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4089217, whole genome shotgun sequence.
ACCESSION   DATIMD010000122 DATIMD010000000
VERSION     DATIMD010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2989
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4089217"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1145)
                     /locus_tag="VLI40_02730"
     CDS             complement(<1..1145)
                     /locus_tag="VLI40_02730"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HSU96112.1"
                     /translation="MSVTTALRNDYAPPASDDPARHRILTDLDSNMLVEAGAGSGKTT
                     SLIGRMHALVMSGEPIERIAAVTFTRKAANELRERFQIKLETELRALDPGSEEWLRCD
                     RALHDIDRAFLGTIHSFCARILREHPLEIALDPNFAEVSDSGWEELCRGFWIRWLERC
                     KKSGDEMLAGLGAVGVEAQSLYEGFRCVMKYMDVDFPLTETASPDGAPCRNKLEALID
                     RAREMMPKEEPADGWDPLMNLINRLEYHRRSNDWRNIAVFCTALEQITQSACSVTQKR
                     WSEDKAGKTAAKTLAEQFISLLNGEITALLGCWHEFRYPGVMRFLKRASADFARERHE
                     TGQLGFEDLLMLSATLLREHSHVRDALGERYRRLLVDEFQDTDPIQA"
     gene            complement(1142..>2989)
                     /locus_tag="VLI40_02735"
     CDS             complement(1142..>2989)
                     /locus_tag="VLI40_02735"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HSU96113.1"
                     /translation="TTPRVPERGSDTVVRSSVSALATAALGWLALARVDGEAELQTCE
                     RVRVRLQELADLDGLETTFGAALATLRDTLSDVRAWPLLTSDSKPWSTAGGMVHLTDI
                     SHAATTGRSRVFFVGFDSDATGGSSRQDPLISDAVRTAVGSDALSTAMQRRDERAAVV
                     ASALASVRGRVTLSYAATRSADAGEAGPAPEMLRLRRTMENEPTLSYADLRGRLGSPA
                     SAVPDRASDISALLDTRDVWLGALSDGPILLNGEMLVRGCFKGLDSGISARIEARSPT
                     LTQYTGMVPGAAAALDPRNRPDRPISPSALEKLAACPLSWFYHYGLGLRAPQDPEYNP
                     DAWLDSAQRGALLHEIFEQFATLFTGRRDALATPAAADAMAAIADGVIARWRVEVPPP
                     GDVVLEQEVNELKRAASSFLQMERDALATGDDGTWRYLEYAFGNDERIARYPLTDGSS
                     LAIKGRVDRIDEMDAGWFRVIDYKTGRASRYRKVAKMGRFNGGRQLQAAIYAGVLQEL
                     LVGPVGRFEYIFPTERGQNQTIAYDSVELAEARPIVTQLLEHVRDGTFIATTSADDCK
                     YCGARPICRISEDGYGKVSSPRAEWARENAEAIDAYRGMLERRSRPETT"
BASE COUNT          546 a         1008 c          851 g          584 t
ORIGIN      
        1 tcggcctgaa tgggatcggt gtcctggaat tcgtcgacga gcaggcgtcg gtaccgctcg
       61 ccgagcgcgt cgcgcacatg ggaatgctca cgcagcagtg tagccgagag cattagcaga
      121 tcctcgaagc ccagctgtcc cgtttcgtgg cgctcgcgcg cgaaatccgc cgatgcacgc
      181 ttgagaaagc gcatcacacc cggatatcga aactcatgcc agcagccgag cagcgcggtt
      241 atctcgccgt tcagtagtga gatgaactgc tcggcaagcg tcttcgcggc ggtcttgcca
      301 gccttgtcct cgctccagcg cttctgcgtc acactgcacg ccgactgcgt gatctgctcg
      361 agcgcggtac agaacactgc gatgttgcgc cagtcattgc tgcgccgatg gtactccaga
      421 cggttgatga gattcatcaa cggatcccag ccatccgccg gctcctcctt cggcatcatc
      481 tcacgcgcac ggtcgatgag agcctcgagt ttgttgcgac agggggcgcc gtcaggcgat
      541 gccgtttccg tcagaggaaa atcgacatcc atatacttca tgacgcatct gaagccctca
      601 tacagcgact gcgcctcgac gccaacagcg cccagaccgg cgagcatctc atcgccgctt
      661 ttcttgcagc gctcgagcca gcgaatccag aatccacgac atagctcttc ccatccgctg
      721 tcgcttactt cggcgaaatt ggggtccagc gcaatttcaa gtggatgctc ccgcaggatg
      781 cgcgcgcaga acgagtgaat ggttccaaga aacgcgcgat cgatgtcgtg aagcgcacga
      841 tcacagcgca gccactcttc gctcccggga tcgagcgcgc gcagctccgt ctccagcttg
      901 atctggaacc tctccctcag ctcgttggca gcctttcttg tgaatgtgac agctgcgatt
      961 cgctcgatgg gctcgccgct catcaccaac gcgtgcatgc gtccaatcag cgatgtcgtc
     1021 ttgcccgatc ccgcgcccgc ctcaaccagc atgttgctgt cgagatcggt aagaatccga
     1081 tgcctcgccg ggtcgtcgct cgccggtggt gcgtagtcat tccgaagcgc tgtggttaca
     1141 ctcacgttgt ctccggcctg ctacgccgct ccagcatacc gcgatacgcg tcgatggcct
     1201 ctgcgttctc gcgcgcccac tccgcacgtg gcgagcttac tttcccgtat ccgtcctcgc
     1261 tgatacggca gatcggccgc gctccgcagt acttgcaatc gtccgcactg gtcgttgcga
     1321 tgaacgttcc gtcgcgaacg tgctccagca gctgcgttac tattggacgc gcctctgcca
     1381 gctcgaccga gtcgtacgcg atagtctgat tctgcccgcg ctctgtggga aatatgtatt
     1441 cgaagcgacc gacgggaccg accagcaatt cctgcaacac gcccgcgtag atcgcggcct
     1501 gcagttgtcg gccgccgttg aagcgtccca ttttcgcgac cttccgatag cgactcgctc
     1561 ttcctgtctt gtagtcaatt acccggaacc aacccgcatc catctcgtcg atacgatcga
     1621 cccttccctt tatggcaagc gagcttccgt cagtgagcgg gtagcgcgcg attcgctcgt
     1681 cgtttccgaa ggcgtattcg agatatcgcc aggtgccgtc atcgcccgtc gcgagtgcat
     1741 cgcgctccat ctgcagaaag gacgatgccg cgcgcttcag ctcattcacc tcctgctcga
     1801 gaaccacatc tcccggcggc ggaacttcca ctcgccagcg cgcgatgact ccgtcggcga
     1861 ttgctgccat cgcgtctgcc gctgcaggcg ttgcgagagc gtcgcgccga cctgtaaata
     1921 gagtggcgaa ctgctcgaat atctcgtgca acagcgctcc acgttgcgcc gagtcgagcc
     1981 acgcgtcggg attgtattcc ggatcctgag gcgcccgaag gccaaggcca tagtgataga
     2041 accacgacaa cggacacgcg gcaagcttct cgagcgccga tggcgagatt ggtcgatccg
     2101 gtcggttgcg cggatccagc gcggccgctg cacctggcac cataccggtg tattgcgtga
     2161 gcgtcggcga ccgtgcctcg attcgcgcgc tgatccccga atccaatcct ttaaagcatc
     2221 cgcgcacgag catctcgcca ttcaacagga tcggaccgtc ggacagcgct ccgagccaca
     2281 cgtctctcgt gtcgagcagc gccgaaatat ctgaagcacg atccggaacg gccgacgccg
     2341 gtgacccgag gcgcccgcgc agatccgcat acgacaacgt gggctcgttt tccatagtcc
     2401 gccgcagccg cagcatctcc ggtgctggtc ccgcttcgcc ggcatcggct gaccgtgtcg
     2461 ccgcatacga cagcgtgaca cgaccgcgca ctgatgccag cgcgctcgcg accacagcgg
     2521 cgcgctcgtc ccgccgctgc atcgccgttg acaatgcgtc gcttccgacc gcagtgcgaa
     2581 ctgcatccga aatcagcgga tcctgtctcg atgatccgcc cgtcgcatcg gaatcgaatc
     2641 cgacgaagaa cacccgtgag cgaccggtcg ttgctgcatg agaaatgtca gtgagatgca
     2701 ccattccgcc ggcggtgctc cacggcttgg agtcgctcgt gagcagcggc cacgcgcgta
     2761 cgtcgctgag cgtgtcacgc agcgtcgcga gcgccgctcc gaacgtagtc tcgagtccat
     2821 cgagatcggc gagctcttgc aaccggacgc gcacacgctc gcacgtttgc agctccgcct
     2881 cgccatccac gcgcgcaaga gcgagccatc cgagcgccgc ggttgcgagc gccgatacgg
     2941 atgatctgac aaccgtatca ctgccgcgtt ccggaacacg aggcgtcgt
//
LOCUS       DATIMD010000123         5283 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_48407, whole genome shotgun sequence.
ACCESSION   DATIMD010000123 DATIMD010000000
VERSION     DATIMD010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5283
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48407"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..807
                     /locus_tag="VLI40_02740"
     CDS             <1..807
                     /locus_tag="VLI40_02740"
                     /inference="COORDINATES: protein motif:HMM:NF013986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BadF/BadG/BcrA/BcrD ATPase family protein"
                     /protein_id="HSU96114.1"
                     /translation="ADACADTIAAAVVAALESAELTGVLPRVLYAGVAGTGRESEQMA
                     LQDALSRREIADEVVVETDASIALADAFGDRSGVILIAGTGSIAFGRSPAGMLARCGG
                     WGFTFGDEGSGAWIGRRALSVVAAAHDGREPETTLTGAILTAAQVNEVEQLIPWALAA
                     DREALAALAPSVLAMAMQDDVRANSIVDMAVEELVLHVRALARSLFVDDRAAFDLALS
                     GGLLHKGSLLRKRLERRLRVAVPGATVHAEDVDGARGAIKLALLAASAVA"
     gene            817..1824
                     /locus_tag="VLI40_02745"
     CDS             817..1824
                     /locus_tag="VLI40_02745"
                     /inference="COORDINATES: protein motif:HMM:TIGR02824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HSU96115.1"
                     /translation="MSSSFSRPGSIRHIEVVRPGGPDEMHLTEGPVPALGPDEVRIHV
                     EAAGVNHADLLQRAGNYAVPSTASPILGLEVAGYVSGAGERAAMVWNIGEEVCALVNG
                     GGYATECVAPSMQCLPIPEGFSMVQAAALPEALFTVWYNVFQRCRLSAGETLLVHGGT
                     SGIGVIAIQMARAIGAKVFATAGSAEKCAVCLRLGAEVAIDYHEADFASVAIERSGGR
                     GVDVILDMVGGAYVERNFHALAMEGRLVNIAYMAGSRVNIDLRPIMQKRLMMTGSLMR
                     RLPPQEKAVIAQELMLRVWPLLERGLILPVIDSTFPMSRAADAHRRMEEPHIGKIVLT
                     N"
     gene            complement(1897..2463)
                     /locus_tag="VLI40_02750"
     CDS             complement(1897..2463)
                     /locus_tag="VLI40_02750"
                     /inference="COORDINATES: protein motif:HMM:NF017496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HSU96116.1"
                     /translation="MSIAGTERKHWTAADLREIPDDRNRYEIIDGELFMTPSPSWSHQ
                     LLSQEIFRVLDPYVATHGIGQIIWAPADVEFADDTVVEPDLFVVPLVEGRKARSWEDV
                     GRLLVVIEILSQSTARADRTVKRRRYQSEGVPEYWIVDGNARVVERWRPEDDRPEILA
                     DNLQWRPDLALPALVIDLPKLFTTVFGE"
     gene            complement(2653..3909)
                     /locus_tag="VLI40_02755"
     CDS             complement(2653..3909)
                     /locus_tag="VLI40_02755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HSU96117.1"
                     /translation="MTPRRGLRRVSLTQWIVIAAVLGIIIGILFPTFAVKLDPLSQIF
                     LRMIKSLIVPLIFATLVVGIAGHGDDMAKVGRLALRSLIYFELVTTGALIIGLSAVNI
                     FKPGIGVSLGGATATTGTELASHPVTFGGVLEHMVPQSFFEAAYHNEVLQIVFFAILF
                     AVALTRQKGEKKKLMLDFCAATSDLMFKFTEIVMAYAPIGIGAALAVTVGHSGIGVLL
                     GLGKLVATLYGALIVFALVVLLPIAVLTRIPLRAFLRSVRAPALIAFSTASSEAALPL
                     AMENMEAMGVPARIVAFVMPTGYSFNLDGSTLYLAVASVFAAQAGGIQMTLGQQIVMM
                     LTLMLTSKGVAAVPRASLVILSGALTMFGLPLQAVAVILGVDAFMDMARTSVNLIGNC
                     LASAVMARWEGELAPGGKPAVEVVAA"
     gene            complement(3929..>5283)
                     /locus_tag="VLI40_02760"
     CDS             complement(3929..>5283)
                     /locus_tag="VLI40_02760"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSU96118.1"
                     /translation="FSVLLTAVACGFAALCYAEFAAMVPIAGSAYTYAYAALGEFIAW
                     IIGWDLIIEYAVGNIGVAIGWSGYFRELIGHFGWSLPSWLATDYRSAHSAFVQLGAGG
                     SAVDATTRYIASAWTSAPHVFGLPLIINLPAAAVVALITIVLVIGIKESANANNAMVL
                     LKVGIILFFIAVGLFLIHPSNWTNPATGGFVPNGMAGISAAAAIIFFSYIGFDAVSTA
                     AEETRNPGKDMPFGIIMSLVVTTVLYIAISVVMTGMAPWQQLGTAEPMITALRFAAGP
                     PALLNASRFIVALGAVMAMGSVLLVFQLGQPRIFFSMSRDGLLPPVLAKVHPRYKTPY
                     VGTILTGIFVAVFAAFANIAEVVDLTNIGTLFAFVLVSAGVIVLRRTDPDRPRPFRVP
                     WVPITPLISIAACFYLMTQLPGITWIRFIIWLAVGLVLYFTYGYSHSTLRNRRESDHG
                     "
BASE COUNT         1074 a         1636 c         1656 g          917 t
ORIGIN      
        1 gcggacgctt gcgcagatac cattgcagct gctgtcgtcg cagcgctcga gagcgcggag
       61 ctgacgggcg tgctcccgcg agtgttgtat gcgggcgtcg ctggaaccgg acgcgagagc
      121 gagcagatgg ctctgcagga cgcgttgtcg cgccgggaga tagccgacga agtggtggtc
      181 gagaccgacg cgagcatcgc gctcgccgat gcgttcggtg atcgctccgg agtgattctc
      241 atcgcgggaa cgggatcgat cgcattcggg cgcagtcctg cgggaatgct ggctcgctgc
      301 ggcggctggg gcttcacgtt cggcgatgaa ggaagcggcg cgtggatcgg acgccgtgcg
      361 ttgagtgtcg ttgccgccgc gcacgacggg cgcgagcctg agacgacgct cacgggcgcg
      421 atcctgaccg cagcgcaagt gaacgaggtg gagcaactga tcccatgggc actcgccgcg
      481 gacagagagg cgctcgccgc gctcgcaccg tccgtgcttg caatggccat gcaggacgac
      541 gtccgtgcca acagcatcgt ggacatggcg gtcgaggaac tcgtgctgca tgtccgcgcg
      601 ctcgcgcggt cattgttcgt cgatgaccgc gcggcattcg atctggcgtt gagcggcgga
      661 ttgcttcaca agggatcgct gctccggaaa aggttggagc gcagacttcg cgtcgccgtt
      721 cccggtgcga cggtgcacgc ggaagacgtc gacggagcac gcggcgcgat caagctcgcg
      781 ctactggccg cctcagccgt cgcctgatac ggcacgatgt cgagctcctt ttccaggccg
      841 ggatcgatcc ggcacatcga ggtggtcaga cccggcggtc cggacgagat gcatctcacc
      901 gaaggaccgg ttccggcgct cggacccgat gaggtgcgca tccacgtcga agcggccggc
      961 gtcaatcacg ccgatctgct gcagcgcgct ggcaattacg cggtgccaag caccgcgtcg
     1021 ccgatccttg ggctcgaagt tgctggttac gtgtctggcg ccggcgagcg agccgccatg
     1081 gtgtggaata tcggcgagga agtttgcgcg ctcgtgaacg gtggcggcta cgcgactgag
     1141 tgcgtagcgc cgtcgatgca atgccttccc attccggaag gtttttcgat ggtgcaggct
     1201 gccgcgcttc ccgaggcgct gttcacggtg tggtacaacg tgttccagcg ttgccggctt
     1261 tcggctggcg agacgctgct cgtccacggc ggtaccagcg gtattggcgt gatcgctatc
     1321 cagatggcgc gcgcgatcgg cgcaaaggta ttcgcgacgg ccggatcagc ggagaagtgc
     1381 gcggtctgcc tgagactcgg cgcggaggtc gctatcgatt atcacgaagc cgatttcgct
     1441 tcggttgcga tcgagcgcag cggagggcgc ggcgtcgatg tcattctcga catggttggt
     1501 ggcgcgtacg tcgagcgcaa tttccacgca ttggcgatgg aaggccggct cgtcaacatc
     1561 gcatacatgg cgggcagtcg cgtcaacatc gatctccgtc cgatcatgca gaagcggttg
     1621 atgatgacag gctcgctgat gcggcgcctt ccgccacagg agaaggccgt aatcgcccag
     1681 gagctcatgc tgcgcgtgtg gccgttgctc gaacgcggac tcatcctgcc agttatcgat
     1741 tcgacgtttc ccatgtcgcg cgcagctgat gcgcacaggc ggatggaaga gccgcatatc
     1801 ggaaagatcg tactgacgaa ctagagctgc gcagaaacga ggatgcgcgc cgtcgtgcga
     1861 ggagatctta catccccgcc gccttgcaac gacgagttat tcgccgaata cggtggtaaa
     1921 caacttgggc aaatcgatga ccagcgcggg tagcgcaaga tccggtcgcc attggaggtt
     1981 atcggcgagg atctcaggcc ggtcatcctc tgggcgccaa cgctctacta cacgcgcgtt
     2041 tccgtccaca atccaatact ccggtacgcc ttcactctga tatctgcgcc gcttcacagt
     2101 tctgtccgct cgcgcagtgc tttgggagag gatctcgatg acaactagca ggcggccgac
     2161 atcttcccag gatcgcgcct ttcgcccttc aacgaggggg accacgaaca gatccggctc
     2221 gaccaccgtg tcgtctgcga actcgacgtc agccggagcc cagattattt gtccgatccc
     2281 atgggtcgcc acgtagggat cgaggacgcg gaagatttcc tgggacagaa gctgatgcga
     2341 ccatgatggt gacggcgtca tgaacagctc gccgtcgatg atctcgtagc gattccggtc
     2401 gtccggaatc tcacgcagat cagccgcagt ccagtgcttt ctctctgtac cggcgatgga
     2461 catagaccta cgatacgctc ctcggcgccg agtgggcaag taggcataag ccaacattgc
     2521 agtgccactc gagccgcggc tgtatcatcc cttaccgcgc ttcagcggaa tcccgccaca
     2581 caggaacccg tggaaccgcg ccttcgcctg gtgacgaggc agcaggcgaa catgacgttt
     2641 gggtggtagc cgctacgccg ccaccacttc cactgccggc tttccgccgg gcgccagctc
     2701 cccttcccat ctcgccatca cggcgctcgc gagacaatta ccgatcaggt tcaccgacgt
     2761 cctcgccatg tccatgaacg cgtcgacgcc cagaatcacc gcgactgcct gaagcggaag
     2821 cccgaacatc gtgagcgcgc cggacagaat cacgagcgac gcgcgcggca ccgcggcgac
     2881 acccttgctc gtgagcatga gcgtcagcat catcacgatc tgctgcccca gagtcatctg
     2941 gattccgccg gcctgcgcgg cgaacaccga tgcgactgcc agataaagcg tgcttccgtc
     3001 gagattgaac gagtatcccg tcggcatcac gaacgccacg atgcgcgccg gaacgcccat
     3061 cgcttccatg ttctccatcg cgagcggcag cgcggcttcg gacgatgcgg tcgagaacgc
     3121 gatcagcgcc ggtgcgcgca ctgagcgcag gaacgccctg agcgggatgc gcgtgagcac
     3181 ggcgatggga agcagcacaa cgagcgcaaa gacgatcagc gcgccgtata gcgtggctac
     3241 gagcttgccg agaccgagca gcacgccgat cccgctgtgg ccgaccgtca cggcgagcgc
     3301 tgcaccgata ccgatcggtg cgtaggccat cacgatctcg gtgaacttga acatcagatc
     3361 cgacgtcgcg gcacagaaat cgagcatcaa cttcttcttt tcacccttct gtcgcgtgag
     3421 cgccacggcg aacagaatcg cgaagaatac gatctgcaga acttcgttgt gatacgcagc
     3481 ctcgaagaag ctctgcggta ccatgtgctc cagcacacca ccaaaggtga ccggatgcga
     3541 cgccagctcg gtaccggtcg tcgcggtcgc gccgccgagc gaaacaccga ttcccggctt
     3601 gaagatgttc acagcgctca gtccgatgat gagcgcccct gtggtcacga gctcgaaata
     3661 gatcagggac cgcaacgcga gacgacccac cttggccatg tcgtcaccat ggcccgcgat
     3721 ccccaccacg agcgtcgcga agatcagtgg cacgatcagc gacttgatca tccgcaggaa
     3781 tatctgcgac aacggatcga gcttgaccgc gaacgtcggg aacaggatcc cgatgatgat
     3841 cccgagtacc gccgcgatga cgatccactg cgtcagagaa acgcggcgca gaccgcgccg
     3901 tggcgtcacg ctcgactcgg gtcgcgcgct atccatgatc gctctcccgt cggttccgca
     3961 gtgtcgaatg gctgtagccg tacgtgaagt acagtaccag acccactgcg agccagatga
     4021 tgaagcgaat ccaggtaatt cctggcagct gtgtcatgag gtagaagcag gcagcaatgg
     4081 agatcaacgg tgtgatcgga acccacggca cccggaacgg tcgcggtcga tccggatcgg
     4141 tgcgacgaag cacgatcaca cccgccgaca cgagcacgaa ggcaaacagc gtcccgatat
     4201 tcgtgagatc gaccacttca gcgatgttcg caaaagcggc gaagaccgcg acaaaaattc
     4261 ccgtgaggat cgtgccgacg tacggcgtct tgtaacgcgg atgaaccttg gcaagcaccg
     4321 gcggaagcag cccgtcccgt gacatcgaga agaagattcg cggctggccg agctggaaga
     4381 ccagcagaac gctacccatc gccatcacgg cgcccagtgc gacgatgaat cgtgatgcat
     4441 tgagaagcgc cggcggtcct gcggcgaacc ggagagcggt gatcatcggc tccgctgttc
     4501 ccagctgctg ccatggcgcc ataccggtca tcaccaccga gatagcgata tagagaactg
     4561 tcgtcacgac caggctcatg atgatcccga acggcatgtc cttgcccgga ttacgcgtct
     4621 cctccgcggc tgtggacacg gcgtcgaagc ctatgtagct gaagaaaatg atcgcagctg
     4681 ccgcgctgat gcccgccata ccgttcggca cgaagccgcc ggtcgcagga ttggtccagt
     4741 tcgacgggtg gatgaggaac agtccaaccg cgatgaaaaa cagtatgatc ccgaccttga
     4801 gcaggaccat cgcgttgttc gcattcgccg actccttgat gccgatcacg agaactatcg
     4861 ttatcagcgc gacaactgcc gcggccggaa gattgatgat cagcggaagg ccgaagacgt
     4921 gcggcgcgga tgtccacgcc gatgcgatgt acctggtcgt cgcgtcaact gcgctgccgc
     4981 cggcgccaag ttgaacgaac gcgctatgtg ccgatcgata atccgtcgcg agccacgacg
     5041 ggagactcca tccaaagtga ccgatcagct cacggaagta gccggaccag ccgatcgcga
     5101 cgccgatgtt gccgacagcg tactcgatga tgagatccca gccaattatc cacgcgatga
     5161 actcgccgag tgcggcatac gcgtacgtat acgccgagcc ggcaatcgga accatcgctg
     5221 caaactcggc gtaacacaac gccgcgaagc cgcacgcgac cgcggtcagc aggacggaaa
     5281 aga
//
LOCUS       DATIMD010000124         4624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5247057, whole genome shotgun sequence.
ACCESSION   DATIMD010000124 DATIMD010000000
VERSION     DATIMD010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4624
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5247057"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..312
                     /locus_tag="VLI40_02765"
     CDS             <1..312
                     /locus_tag="VLI40_02765"
                     /inference="COORDINATES: protein motif:HMM:NF022188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2520 domain-containing protein"
                     /protein_id="HSU96119.1"
                     /translation="AARILTHAGVEEHTAEQVVQRLMAGAVANLEHGSPRNILTGPAA
                     RGDAEGIAAHRAALRDEPEALAVYDALTRAATGLIAGSATHHSTAVDDTNVGRRGELK
                     G"
     gene            complement(244..930)
                     /locus_tag="VLI40_02770"
     CDS             complement(244..930)
                     /locus_tag="VLI40_02770"
                     /inference="COORDINATES: protein motif:HMM:NF021391.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA];
                     GO_process: GO:0044874 - lipoprotein localization to outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein carrier protein LolA"
                     /protein_id="HSU96120.1"
                     /translation="MIMKSRYITSALAAATLCIAASLGAQRPEATLQRAIDAYANAET
                     ISVRFDQTVTNPLTDRTLTTSGQLMRRRPNWLSISFSGANPDRIVADGTNLWVYLPSS
                     APGQVIKVPAAAGEKGMLVDPMGQILSAPISNYSVTDAGTSVVSGEATHAVTLTPKSR
                     SAPFTKATLWIDDTDGLVRQLESTEPSGLVRKITVTRFRTNVTIPRSTFQFTPPPNIR
                     IIDGGGMMGG"
     gene            complement(998..2032)
                     /gene="aroF"
                     /locus_tag="VLI40_02775"
     CDS             complement(998..2032)
                     /gene="aroF"
                     /locus_tag="VLI40_02775"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HSU96121.1"
                     /translation="MLVVMRHGAPAADVERVVAVINEMGYAAHPMPGAQRTAVGIVGN
                     DGRVDAGRIEALPSVVRVIHVTQPYKQVSREWRPESTIVTIAPGVSFGGTDVPVIAGP
                     CSVESEAQIIRAAELVLAAGGTALRGGAFKPRSSPYAFQGLGFEGLKMLVRAREETGL
                     PIVTEAMDDEGARLVAEYADCIQIGARNMQNYSLLKAVGKLGRPVLLKRGMAATISDL
                     LLSAEYILAEGNSQVILCERGVRTFDPAVRNMFDLTSIPMVHELSHLPIVADPSHGTG
                     LRDMVTPMARAAVAAGADGIIVEMHPEPDRALSDGAQSLYPRQFADLMLELRGVAAAI
                     GRALPAAPQA"
     gene            complement(2085..>4624)
                     /locus_tag="VLI40_02780"
     CDS             complement(2085..>4624)
                     /locus_tag="VLI40_02780"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSU96122.1"
                     /translation="VEAELTEAAASRAQLEAELAGLSEQLRDRATSEEAARTALSTAR
                     GAVEQAERRARELREQVHRLTMDRDAAERERQDVLRRHEAIRNEQLQLFDAAELVARE
                     VEDARIALDVSRVRVVETADIRDAAESNVRAAREADAAARSDALRAEEAHAALEGRAH
                     ALQALERERVGLAPAAAKLLRERGRFAEGAILGPLSDYISADSAPAALVERYLGATVH
                     AVLVRDRAAADTIRAWHVATQPGPLLLLPVDATFVSTSQTVPGDLAALVNATDPVAAG
                     WVRALLGDVRAVEEATAFVDARGAVWLPASVVGPGPLRRRAELTDITREMATAAANLR
                     NAAAIATAAREALDVAMQTSAAAADAAAIAAREARHAEEVVNEILRRHQRATREVTEA
                     DLALAKLNERAESLVQRSKEIDAEIARITEAGHAHDATLLEYRRALSEAEGAHDQTRE
                     LRTAAQVQQAQAQARLQVVTDRERRLREEETMATSRLSALQSELSTLSQDDAALTSQL
                     ADWALDLEARDGVLRDTESQLSDAERAVRMADEALSGADHALDKVRREAANVSDQLHA
                     AELRYTELSGRKTAIRERLETEWRRPLDELMAECVPLEDEDEALRAEAADLRAQLESL
                     GQVNPLAIEEHQEESKAVEFLRQQRADLDEARAKLQQAIREIDATAREMFLTTFVQVR
                     ENFRHIFMTLFGGGDCDVRLQNPDAPLDSDIEIHASPRGKKTQRIHLLSSGERALVAL
                     SLLFGIFLMKPSPFCLMDEVDAPLDDQNIGRFVRMLNEFKANTQFIVITHNPRTTTES
                     ADAVYGVTMQEPGVSSIVSVRLRGPAVEEAIAGSAPASKSEPATAGV"
BASE COUNT          762 a         1556 c         1440 g          866 t
ORIGIN      
        1 gcggctcgca tcctgactca tgccggcgtc gaggagcaca cggcggagca ggtggtgcag
       61 cggctcatgg ctggtgcagt tgcgaacctc gaacatggat caccacgcaa cattctcacc
      121 ggtccggctg cgcgcggtga cgcagaggga atcgccgcac atcgcgccgc actgcgcgac
      181 gagccggaag cgcttgcggt ttacgacgcg ctgacgcgcg ccgctacggg tttgatcgcc
      241 ggctcagcca cccatcattc caccgccgtc gatgatacga atgttgggcg gcggggtgaa
      301 ctgaaaggtt gatcgcggaa tcgtgacgtt cgtcctgaac cgcgtcacgg tgatctttcg
      361 cacaagccca ctcggctcag tcgattccaa ctgacgcacg aggccgtcag tgtcgtcgat
      421 ccagagagtc gcttttgtga acggggcaga gcgagatttt ggtgtcagcg ttacggcatg
      481 tgtggcctcg ccgctgacaa cactcgtccc ggcgtcagta acgctgtaat tgctgatcgg
      541 cgcggaaagt atctgaccca tcgggtccac aagcatgccc ttctcaccag cggcagctgg
      601 aaccttgatt acctgcccgg gcgcgctgct cgggagatac acccacagat tggtcccgtc
      661 agcgacgata cgatcaggat tcgctccgct gaatgagatc gacagccagt tggggcgacg
      721 gcgcatcagc tggccgctcg tcgtcaacgt ccggtctgtc aacgggttgg ttacagtctg
      781 atcgaagcgc accgaaatcg tctcggcgtt cgcgtacgca tcgatcgcgc gctgaagcgt
      841 tgcctccggg cgctgcgcac caagcgaagc ggcgatgcaa agcgtcgcgg ctgcgagcgc
      901 ggatgtgatg tagcgtgact tcatgatcat cgtgtacccg ctcaccgggc taccgttccg
      961 ccgcacgggc gcatgtcacg cgcatatcac ctgcacgtca cgcttgtgga gcagctggca
     1021 gcgcgcggcc gattgctgcc gccacgccac ggagctcgag catgaggtct gcgaactgcc
     1081 tgggatacag cgactgagcg ccgtcagaca gcgcgcggtc cggctcggga tgcatctcga
     1141 cgatgatgcc atccgctcca gccgctaccg ccgcgcgcgc catcggcgtc accatgtcgc
     1201 gcagtcccgt cccatgactt ggatccgcga cgatcgggag gtgcgacagc tcgtgcacca
     1261 tcgggatcga cgtcagatcg aacatgttgc gaacggcggg atcgaaggtc cgcactccgc
     1321 gctcgcacag aatcacctgg ctgttgcctt cagcgagaat gtactctgca ctgagcagaa
     1381 gatccgagat cgtcgcggcc attccgcgct tcaacagcac cggccgcccc agcttaccga
     1441 cagccttgag cagcgaatag ttctgcatgt tgcgcgcgcc gatctgaatg cagtccgcgt
     1501 actcggcaac gagacgcgcg ccttcgtcgt ccatcgcttc ggtcacgatc ggaagcccgg
     1561 tctcttcacg tgcgcgaacg agcatcttga gaccttcaaa gcccagtccc tggaaggcgt
     1621 agggtgagct tcgcggcttg aacgcaccgc cgcgcaacgc cgttccacca gccgcgagta
     1681 ccaactcggc agcgcgaatt atctgcgctt ctgattcgac cgagcacggg ccagcgatta
     1741 ccgggacgtc cgtgccgccg aacgaaactc ccggcgcgat ggtaacgatg gtcgactcgg
     1801 gacgccattc gcgcgacacc tgcttgtacg gctgcgtcac gtgaatgact cgtacgacgc
     1861 tgggcaacgc ctctattcgg cccgcatcca cgcgtccgtc gttgcccacg atgccgaccg
     1921 cggtgcgctg tgcgccgggc atcgggtgcg cggcgtatcc catctcgttt atgaccgcaa
     1981 ctacgcgctc cacgtctgcc gcgggcgcgc cgtggcgcat gactacaagc atgatgctct
     2041 caatctcggg tatggcgccg gactatatgg cgccgttcag tcaactagac tccagccgtc
     2101 gccggctcgg acttcgatgc cggcgcggat ccggcgatcg cttcttccac cgcagggcca
     2161 cgcaaccgca cactgacgat ggacgacacg ccaggctcct gcatcgtcac gccatatacc
     2221 gcgtccgctg attcggtagt ggtgcgcggg ttgtgcgtaa tgacgatgaa ctgagtgttg
     2281 gccttgaatt cgttcagcat tcgcacgaac cgaccgatgt tctggtcgtc cagcggggca
     2341 tcgacctcat ccatcagaca gaacgggctc ggcttcatca ggaagatgcc gaacaggaga
     2401 gacagcgcga ccagcgcgcg ctcaccgctc gagagcaggt ggatccgctg cgtcttcttg
     2461 ccgcggggcg atgcatggat ctcgatgtcg ctgtcgagtg gcgcatcggg gttctgcagg
     2521 cgtacgtcgc aatccccgcc cccgaacagc gtcatgaaga tgtgccggaa gttctcgcgc
     2581 acctgcacga atgtcgtgag gaacatctcg cgcgccgtcg cgtcgatctc acggatcgcc
     2641 tgctgcagct tggctcgcgc ctcatccagg tcagctcgct gctggcgcag gaattcgaca
     2701 gccttgcttt cctcctgatg ctcttcgatc gcgagcgggt ttacttggcc gagcgattcg
     2761 agctgcgcgc gcagatcagc ggcctccgct cgcagtgcct catcctcgtc ctcgagcggc
     2821 acgcactcgg ccatcagctc gtccagcggt ctgcgccatt ccgtttcgag ccgctcgcgg
     2881 attgctgtct tgcgtcccga tagctccgta taccgcaact cggcggcgtg cagctgatcc
     2941 gaaacgttcg cggcctcccg cctcaccttg tcgagagcgt gatcagctcc ggatagcgcc
     3001 tcgtccgcca tccgtactgc gcgctcggcg tcggacaact gcgattccgt gtcacgcagt
     3061 acgccgtcac gcgcctcgag atcgagcgcc caatcggcga gctgcgatgt gagtgcggcg
     3121 tcatcctgcg acagcgtact caattccgac tgcaacgccg acaggcgaga cgttgccatc
     3181 gtttcttctt cacgaagacg acgttcgcga tcggtcacta cctgcagcct tgcctgtgcc
     3241 tgcgcctgct gcacctgagc cgcggtgcgt agctcacgcg tctggtcgtg cgcaccttcc
     3301 gcctcgctca gtgcacgacg gtactccagc agtgtggcgt cgtgcgcgtg tcctgcttcg
     3361 gtaatgcgtg cgatctcggc gtcgatctcc ttgctgcgct gaacgagtga ctcagcgcgc
     3421 tcgttcagct tggcgagagc caggtccgcc tctgtcactt cacgcgtggc ccgttgatgg
     3481 cggcgcagga tctcgttcac gacctcttcc gcatgacgtg cctcgcgcgc ggcgatcgcc
     3541 gcggcatccg cggctgcagc agacgtctgc atcgcgacat cgagagcctc gcgcgccgcg
     3601 gtcgcgatcg ccgcggcgtt ccggagattc gcggcggcgg ttgccatctc gcgcgtgatg
     3661 tccgtgagct ctgcgcgacg gcgcagtggg cccggaccga cgacacttgc gggcagccac
     3721 actgcgccgc gtgcgtccac gaacgctgta gcttcctcga ctgcacgaac gtcgccgagc
     3781 agtgcgcgta cccaccccgc ggccacaggg tctgtagcgt tgacgagcgc ggcgagatcg
     3841 cccggcaccg tctgtgacgt cgacacgaac gttgcatcga cgggcagcag caggagtggt
     3901 cctggctgag ttgcgacgtg ccacgcgcga atcgtgtcgg cggccgcacg gtcgcgcacc
     3961 agcaccgcat gcacggttgc gccgagatac cgctcgacga gggccgccgg cgcggaatcc
     4021 gcgcttatgt agtcgctgag cggaccgaga atcgcacctt cggcgaatct gccgcgttcg
     4081 cgcagcaact ttgccgccgc tggcgcgagt ccgactcgtt ccctctccag cgcctggagg
     4141 gcatgggcgc ggccttccag cgcggcgtgc gcttcttccg cacgcaatgc gtcgctgcgg
     4201 gctgcggcgt cggcttcacg cgctgcccgg acattggatt cggcggcatc gcgaatgtcg
     4261 gcagtctcca cgacgcgaac acgcgagacg tcgagcgcga tgcgcgcgtc ctcgacttcg
     4321 cgtgccacca gctcggcggc gtcgaacaac tgcaattgct cgtttctgat tgcttcgtga
     4381 cggcggagca catcctggcg ctcacgctca gctgcatcgc ggtccatcgt aagacggtgc
     4441 acctgctcgc gcagttcacg tgcgcgccgc tcggcctgct cgaccgcacc acgagctgtg
     4501 gaaagcgctg ttcgggcagc ctcctcgctg gtggcgcgat cgcgcaactg ttcgctgagc
     4561 ccggcgagct ctgcctccag ctgagcgcgc gaagctgcag cttccgtcag ctcggcctcg
     4621 acac
//
LOCUS       DATIMD010000125         9422 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_49246, whole genome shotgun sequence.
ACCESSION   DATIMD010000125 DATIMD010000000
VERSION     DATIMD010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9422
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49246"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..767
                     /locus_tag="VLI40_02785"
     CDS             <1..767
                     /locus_tag="VLI40_02785"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSU96123.1"
                     /translation="GIKVPAHLYRPEDFGARPNGAAVIFVHGAGYLHNVGNFWSEYPR
                     EYLFNQFLARHGYVVMDADYRASDGYGRDWRTAIYRHMGGRDLQDEVDVSRYITATYG
                     IPAKRIGIYGGSYGGFMTLMALFTAPDYFGAGAGLRSVTDWAHYNNGYTSAILNLPQN
                     DTLAYRQSSPIYFAEGLRAPLLMAHGMVDTNVNYEDIVRLTQRLIELGKTDWELASYP
                     VESHAFLRPDSWTDEYTRIFKLFERTIAQSSTSMAH"
     gene            complement(748..1926)
                     /locus_tag="VLI40_02790"
     CDS             complement(748..1926)
                     /locus_tag="VLI40_02790"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU96124.1"
                     /translation="MAERQKLGRNVLALGTVSFFTDVASEMMYPLLPVFLASVLGASA
                     SFIGVIEGAAESVAALLKLASGWWSDRVQSRKGLVLAGYVIASVIRPFTAATHTAAQV
                     LGIRVTDRIGKGIRSTPRDALIAESVDPSIRGRAFGFHAAADNAGAVVGPLIAFGVLY
                     EWHTPLRTVFWLTAIPGALAVLVLWIFVRDVPHPISHTGRPPMFGTDLPSRFWGYLAV
                     VFVFTLGNSTDAFLLLRASQLGVPVALAPVLWALLNFIKSTTGTYGGGLSDRIGRKPL
                     IIGGWLLYAAVYLAFGIAHSAWQAWVLFAVYGVFYGMTEGTEKAMVVDMVPSQRKGTA
                     LGWYNLAIGIGALPASLIFGAVWDRVGAPAAFALGAALAFIASLGIMFVRPIVSAPST
                     "
     gene            complement(2008..3009)
                     /locus_tag="VLI40_02795"
     CDS             complement(2008..3009)
                     /locus_tag="VLI40_02795"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HSU96125.1"
                     /translation="MKVIIPLAGKGTRLRPHTYVTPKPMLRVAGKPVMEYVLDDVKTL
                     PNVEQIIYITGHLKEKVEEFARASTDIPSVFVEQKVQDGTAGAVALARKYVDQPVLII
                     FVDTIFDADLSIIESTDADGIIWTKEVEDYQRFGVVVTDESGFMTKIVEKPTTPISKR
                     ANIGLYYIKNWKLLYEGIASVLKQAPNKGEWYLTDAFQYMIDHGAKIRAVDVAGWYDA
                     GKIDTLLETNRAMLERGRAQSPQSVENSTILDPVYVEAGVTIRNSIVGPNVSIGEGTM
                     VDGSTLSDTIIETYSNIKGSTLTNSLVGHHTVVDGVAGEITIGDHSEIRVSPRGKHT"
     gene            complement(3171..3548)
                     /locus_tag="VLI40_02800"
     CDS             complement(3171..3548)
                     /locus_tag="VLI40_02800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSU96126.1"
                     /translation="MSGKREVRYVEKPWGHEVIWAHTPLYVGKILHIKAGQALSVQYH
                     EQKDETIFLLSGEMIYRIGASADAELKEISLKAGESFRNEPGMVHQMEAVTDCDVLEA
                     STPHLDDVVRLKDRYGREGTKAP"
     gene            complement(3555..4103)
                     /gene="atpH"
                     /locus_tag="VLI40_02805"
     CDS             complement(3555..4103)
                     /gene="atpH"
                     /locus_tag="VLI40_02805"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF004402.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit delta"
                     /protein_id="HSU96127.1"
                     /translation="MQERSNPVSRNYAEALLALATKAENREGFGVMIRDVANAIAQDA
                     TVKLFLESPRVSYERKNEILSQAFGDRVPRVFLRFLQTMVHNRRQMMIPEIATEYAKL
                     LDEQEGRVHAEVTLARAVSDEETANIGAQLSRVLGSRVMPRVSVDPSIMGGIIVKVGN
                     TVMDGSVSRRLSKLATRMRISA"
     gene            complement(4103..4681)
                     /gene="atpF"
                     /locus_tag="VLI40_02810"
     CDS             complement(4103..4681)
                     /gene="atpF"
                     /locus_tag="VLI40_02810"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HSU96128.1"
                     /translation="MPLMHFFLLQETVQHGAAEAPSGLLSPNGGVMVWTLVIFIVLLL
                     VLSKYAFKPITKAVEEREKALSDAIEAAQRDRDDANRLLQDQREQIAAARDEAQKIIA
                     DARAAAEQVRGTIIAHAHGETGELLDRARREIVAERDRAIADLRLEAIDLAIAGASRV
                     IGKNMDDQSNRQLVESFLASIPNSKIVPKAGV"
     gene            complement(4798..5076)
                     /gene="atpE"
                     /locus_tag="VLI40_02815"
     CDS             complement(4798..5076)
                     /gene="atpE"
                     /locus_tag="VLI40_02815"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002636238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit C"
                     /protein_id="HSU96129.1"
                     /translation="MMFPLLQAAVGATKEYAGAWGMMGAGIGAGLAVIGAGIGIGKVG
                     GQAMDGMARQPERAGQIQTAALIFAALVEGVALFAIVVSFVIQQKFSF"
     gene            complement(5309..6166)
                     /gene="atpB"
                     /locus_tag="VLI40_02820"
     CDS             complement(5309..6166)
                     /gene="atpB"
                     /locus_tag="VLI40_02820"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012347.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HSU96130.1"
                     /translation="MLQAGPAIDIITPHITDAHAIDYPCLHPGFVCELALPRWTPIHL
                     GPLVIDMSPTKHVVWLGIAAVLCLITMLMAARAHARTTFGGSRAPTGFGNGMEAFVLF
                     LRNEVVIPNVGPKGDKFTPFILTLFFFILFANLCGLIPYGSTATGNIGVTATLAVITF
                     VVVEIAGMREQGAGYINTIVYWPHDVPVPVKSFMTFIMTPVEIVGKFTKPFALAIRLF
                     ANMTAGHVVLLALIGLIFTFKSYIVAPAPLAMAVAISLLEIFVSLLQAFIFALLSAVF
                     IGQIRTAAH"
     gene            complement(6167..6424)
                     /locus_tag="VLI40_02825"
     CDS             complement(6167..6424)
                     /locus_tag="VLI40_02825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96131.1"
                     /translation="MSRAIWTSVGVAVVVQVLAVLVGRSFGKDRLLVGWGMGALLRLL
                     AVLVYGFAIIPALGLQMAPALLSLVVILFVTTLFEPFLLTK"
     gene            complement(6433..6663)
                     /locus_tag="VLI40_02830"
     CDS             complement(6433..6663)
                     /locus_tag="VLI40_02830"
                     /inference="COORDINATES: protein motif:HMM:NF021073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HSU96132.1"
                     /translation="MGDKGSAPSASDFAGIGLQFAASVLLFGYAGQWLDRRLGTGPWL
                     LIIGVFLGAGGAFYSMYRKLMAAQTDQDRGKP"
     gene            6896..7384
                     /locus_tag="VLI40_02835"
     CDS             6896..7384
                     /locus_tag="VLI40_02835"
                     /inference="COORDINATES: protein motif:HMM:NF024102.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BsuPI-related putative proteinase inhibitor"
                     /protein_id="HSU96133.1"
                     /translation="MENRFIITSLCAAALVYACGPWVHEQTASSSPVTPSNRSFRAST
                     GHKAPADVATELDLARNGSRIDFALRVTNNTHKTVELRFPNARTHDIAVLDSTGKTVW
                     RASAGRLFTQTMQALTVKSSDTLTMEDSWDTNGAHGAYTAVALLATDAHPVERRVAFT
                     LP"
     gene            7442..8395
                     /locus_tag="VLI40_02840"
     CDS             7442..8395
                     /locus_tag="VLI40_02840"
                     /inference="COORDINATES: protein motif:HMM:NF021982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHB depolymerase family esterase"
                     /protein_id="HSU96134.1"
                     /translation="MLIHRAALSPAVLLSTAFALLATQACTHNTVNNDPPGVTSEQKM
                     YVAGELRTYLLHIPAHYDTIRRAPLVIALHGHGGSAENFEKFTGMSDKADAEGFIVVY
                     PQALGDPSDWHTAIDGPSKRDDIRFVREIIDLLEHKYRIDRHRIYAAGHSNGGIMTYR
                     LASMLSDKLAAVGVTAGSIGMIDEKGDTVRIAPPAHPVSVIHFHGMQDQDVPYRGGPE
                     SDGPDNIVSVRNTIGFWLNADHCTATPASRTVSRDRNVIIDAYEPCAKGTAVELYTIV
                     DGAHRWPGDDIPWYTFPSRDDSDVIATDVMWDFFAAHPRVD"
     gene            8499..8846
                     /locus_tag="VLI40_02845"
     CDS             8499..8846
                     /locus_tag="VLI40_02845"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA C4-type zinc finger protein"
                     /protein_id="HSU96135.1"
                     /translation="MTQAQRKHLEGRLLQERDRINQLLARYAAQNENEDDQDQSGDIT
                     KMPLHMADQGTDTMQQELDAVMVDRESKTLAEIDAALQRLYDHPETYGICENTGKEIP
                     FERLDIVPWARTC"
     gene            9193..>9422
                     /locus_tag="VLI40_02850"
     CDS             9193..>9422
                     /locus_tag="VLI40_02850"
                     /inference="COORDINATES: protein motif:HMM:NF027059.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009372 - quorum sensing [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA];
                     GO_process: GO:0044010 - single-species biofilm formation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system MqsR family
                     toxin"
                     /protein_id="HSU96136.1"
                     /translation="MAVRAANDASRLGLADSVVQCVCALKPARIRDGGNFHKSMLAKR
                     APAIAQGLWQDVYLIDWEDELLYVKLHVGRNGL"
BASE COUNT         1968 a         3098 c         2600 g         1756 t
ORIGIN      
        1 atggaatcaa ggtccccgcg cacctctatc gaccggaaga cttcggggcg cgacccaacg
       61 gcgcggctgt gatatttgta cacggcgccg gctatctcca caacgtcggt aatttctggt
      121 cggaatatcc gcgcgaatat ctgttcaatc agttccttgc gcgtcatggc tacgttgtga
      181 tggacgccga ttatcgcgcc tcggacggct acggccgcga ctggcgcacc gcaatctacc
      241 ggcacatggg cggccgggat cttcaggacg aggtcgatgt ctccagatac atcaccgcaa
      301 cgtacggcat tccggcaaag cgtatcggca tctacggcgg aagctatggc ggcttcatga
      361 cgctcatggc actcttcacc gctccggatt acttcggcgc cggtgccggg ctccgtagcg
      421 tcactgactg ggcgcactac aacaacggct acacatcggc gattctaaat ctcccgcaaa
      481 acgacacgct cgcgtatcgc cagtcgtcgc cgatctactt cgccgagggt ttgcgcgcgc
      541 cgctgttgat ggcgcacgga atggtcgaca cgaacgtcaa ctacgaggat atcgtccgac
      601 tgacgcaacg tctcatagag cttggcaaga ccgattggga gctcgcgtcg tatccggtcg
      661 agagccacgc attcctgcgt cccgactcgt ggaccgacga atacacgcgc atcttcaagc
      721 tgttcgagcg cacgattgcg caatcatcta cgtcgatggc gcactgacga ttggccgcac
      781 gaacatgatt cccagagacg cgatgaacgc cagggcagca cccaacgcga atgccgcggg
      841 tgcgcctacg cggtcccaca ccgcgccgaa gatcagtgaa gctggaagcg cgccgattcc
      901 tatcgcgagg ttgtaccagc cgagcgcagt gccctttcgc tgtgacggca ccatatcgac
      961 aaccatcgcc ttctcggtgc cttcagtcat tccatagaac acgccgtata ccgcgaacag
     1021 cacccacgcc tgccacgcag agtgcgctat accgaaggcg agatacaccg ctgcgtagag
     1081 cagccatccc ccgatgatca gtggcttgcg cccgattcgg tcagacaggc cacccccgta
     1141 ggtaccagtc gtcgacttga tgaaattgag cagcgcccac agtaccggcg cgagcgcgac
     1201 aggtactccg agctgactcg cacgcagtag cagaaacgca tcggtcgaat tgccgagcgt
     1261 gaatacgaat acgaccgcga ggtagcccca gaatcgcgac gggagatcgg tgccgaacat
     1321 gggcggccga ccggtatgac tgatcggatg cggcacgtcc cggacaaaga tccacaacac
     1381 cagtacggca agcgcgcccg gtattgccgt gagccagaag acggttcgga gcggtgtgtg
     1441 ccattcgtac agcacgccga acgcgatgag cggtccaacg acggcgccgg cattgtcggc
     1501 ggccgcgtga aatccgaacg cgcgaccgcg aatggacgga tcgacggatt cggcgatcag
     1561 tgcatcgcgt ggtgtcgagc gtattccctt gccgatgcga tcggtgacgc gaatccccag
     1621 cacctgtgcc gcggtatgcg tcgctgccgt gaatggtcgt atcaccgatg cgatcacgta
     1681 gccggcgagc accagtccct tgcgcgactg aacgcggtcc gaccaccagc cgctcgccag
     1741 cttcaacagc gccgcaaccg actccgctgc gccctcgatg acaccgatga agctcgcgct
     1801 cgcgccaagc accgaagcga gaaataccgg cagcagcgga tacatcatct ccgacgcgac
     1861 gtcggtgaag aagctcaccg taccgagcgc cagtacgttg cgcccgagct tctgccgttc
     1921 agccatcaac ctggcccgct gatgtctgga acgacacggg gagagcagtt gctctccccg
     1981 tgagtacggt cgtcaggcga atcatgatta cgtgtgcttg ccccgtgggc tcaccctgat
     2041 ttcggagtga tcaccaatgg tgatctctcc cgccacaccg tcgaccaccg tgtggtgccc
     2101 cacgagcgag tttgtgagcg tggagccctt gatgttcgag tatgtctcga tgatcgtgtc
     2161 cgaaagcgtc gatccatcaa ccatcgttcc ctcgccgatc gacacgttcg gccccacgat
     2221 cgaattgcgg atggtgacac cagcctccac gtacaccggg tcaaggatcg tcgagttctc
     2281 gaccgactgc ggcgactgcg cgcggccccg ctccagcatg gcacgattcg tttccagcag
     2341 cgtgtcgatc ttgccggcgt cgtaccagcc cgccacatcg accgcacgta tcttggcgcc
     2401 gtgatcgatc atgtactgaa atgcgtcggt gagataccac tcacccttgt tcggtgcctg
     2461 cttcaacacg ctcgcgattc cttcgtacag cagcttccag tttttgatgt agtacaggcc
     2521 gatgttcgcg cgctttgaga tcggtgtcgt cggcttctcg acgatcttcg tcatgaaacc
     2581 cgactcgtcc gtcaccacga cgccaaaccg ctgataatcc tccacttcct tcgtccagat
     2641 tatcccgtcc gcgtcggtcg actctatgat ggagagatca gcgtcgaaga tcgtgtccac
     2701 gaagatgatc agtaccggct gatccacata cttccgcgcg agcgcgacag caccagcggt
     2761 accgtcctga accttctgct cgacgaacac ggagggaatg tcggtcgatg cgcgtgcgaa
     2821 ctcctcgacc ttttccttga gatgtccggt tatgtagatg atctgctcga cgttcggcag
     2881 cgtcttcacg tcgtcgagca cgtactccat caccggcttg ccagcgacgc gcagcatcgg
     2941 cttcggtgtg acgtatgtat gcggacgaag ccgcgtgccc ttccccgcga gcgggataat
     3001 aactttcaat gagtcatctc ctgagggccg cctcgatcag cgtacgagca ggcccccgtg
     3061 cctgcccttg gtacgacgag gatctgttcc gtgtaaccaa actacacgga gatctgaaca
     3121 atgcgacgta caggcagact ccatgccggc gctacgatcc cacatccgcc ctacggcgcc
     3181 ttcgtcccct ctcgcccgta gcggtccttt aatcttacca catcgtccag atgcggtgtc
     3241 gatgcctcca gcacgtcgca atccgtcacc gcttccatct gatgcaccat gccgggctcg
     3301 ttcctgaacg actcaccggc ctttagcgat atctccttca actccgcatc ggcactggct
     3361 ccgatgcgat agatcatctc gccgctcaac agaaatatcg tttcatcctt ctgctcgtga
     3421 tactgcaccg acagtgcctg gcccgccttg atatgcagga tcttgccgac gtacagcggc
     3481 gtgtgcgccc agatcacctc gtgaccccag ggcttctcga cgtatctgac ctcgcgcttg
     3541 ccgctcatct cgagctatgc cgaaatacgc atgcgcgtcg ccagcttgct cagccggcgg
     3601 ctgaccgaac cgtccatcac cgtgttgcca accttgacga tgatcccgcc catgatcgac
     3661 ggatccaccg acacgcgcgg catcaccctg ctcccaagta cgcgagacaa ctgcgcaccg
     3721 atattcgcag tctcctcgtc gctcaccgcc cgcgcaagcg taacctccgc gtgtacacgt
     3781 ccctcctgct cgtccagcag cttcgcgtac tccgtcgcga tctccgggat catcatctga
     3841 cggcgattgt gcaccatcgt ctgaaggaag cgcaggaaca cacgcggcac gcggtcaccg
     3901 aacgcctgcg acaggatctc gttcttgcgc tcgtacgaca cgcgcggcga ttcgagaaac
     3961 aacttcaccg tggcgtcctg tgcgatcgca ttcgcgacgt cgcgtatcat gacgccaaac
     4021 ccttcccgat tctccgcctt cgtcgccagc gccaacagcg cctcggcgta gttgcgcgac
     4081 accgggttgg agcgctcctg catcagactc ccgccttggg aacgatcttc gagttcggga
     4141 tcgacgccag gaagctctcg accagttgac ggttggactg gtcatccatg ttcttgccga
     4201 tgacgcgtga tgcgccggca attgcaagat cgatcgcctc gagacgcaga tccgcgattg
     4261 cgcggtcacg ctcggcgacg atctcacgtc gcgcgcgatc cagcagctcg cccgtctcgc
     4321 cgtgcgcatg cgcgattatg gtgccgcgca cctgctccgc ggcggcacgc gcatcggcaa
     4381 tgatcttctg cgcttcgtca cgtgcggcag cgatctgctc gcgctgatcc tgcagcagac
     4441 gattcgcgtc gtcacgatcg cgctgagcag cctcgatggc gtcggacagc gccttctcgc
     4501 gctcctcgac cgccttggtg atcggcttga acgcgtactt cgagagaacc agcaacaaca
     4561 cgatgaagat caccagcgtc cagaccatca ctccgccgtt tggcgagagc aggcctgacg
     4621 gagcctcggc ggcgccgtgc tgaacggttt cctgcaacag gaagaaatgc atgagcggca
     4681 ttatccaatg aaatgtaggg tcaggccccc gtgcctgacc cgctatgccc aaccacgtcg
     4741 agccccgtag ggccaggctc cgtgcctggc cctagttgaa acgaatgctt gatcgcttta
     4801 gaacgagaac ttctgctgga tcacgaacga gacgacgatc gcgaacagcg caacaccttc
     4861 aacgagcgcc gcgaagataa gagccgcggt ctggatctgg cctgcacgct cgggctgacg
     4921 cgccattccg tccatcgcct gtccaccgac cttgccgatg ccgatgcctg cgccgataac
     4981 ggcgagacct gcaccgatac ctgcacccat catgccccac gcgcccgcgt attccttggt
     5041 cgcgccaacc gctgcctgca gcagaggaaa catcatttga accagctccg aatgaatcgt
     5101 atgaccggat tctcaacgcg ctccggcacg gcgcaacccg tcaacgggac ccaagtccca
     5161 acgggattcc cgggtcgagc ccggtacata atctcgtcat tcccgcgaaa acgggaatcc
     5221 acctttatct cgtcattccc gcgaacgcgg gaatccattt ttccttactg aaccgtccga
     5281 tcggcctggc acggacacat ccctgccgtt aatgcgccgc cgtccggatc tgcccgatga
     5341 acaccgccga caacagcgcg aaaatgaacg cctgcagcag cgacacgaat atctccagca
     5401 acgagatcgc aaccgccatc gccagcggag cgggggcgac tatatagctc ttgaacgtga
     5461 agatcagccc gatcagcgcc agcaacacca cgtgaccagc cgtcatgttg gcgaagagtc
     5521 ggatcgccag cgcgaacggc ttggtgaact ttcccacgat ctcgaccggc gtcatgatga
     5581 acgtcatgaa cgacttgacc ggcaccggca cgtcgtgcgg ccagtagacg atcgtgttga
     5641 tgtaacccgc gccctgctcc cgcattcccg cgatctcgac caccacgaag gtgatgactg
     5701 cgagcgtcgc cgtcacgccg atgttgcccg ttgccgtcga gccgtacggg atcagaccac
     5761 acagattcgc gaacaggatg aagaagaaca gcgtgaggat gaacggcgtg aacttgtctc
     5821 ccttgggtcc gacgttcgga atcaccacct cgttccggag gaagaggacg aacgcctcca
     5881 ttccatttcc gaagcccgtg ggagcccgcg agccgccaaa ggtcgtcctg gcatgtgccc
     5941 gcgccgccat cagcatcgtg atgaggcaga gcaccgccgc gatcccgagc cacacgacgt
     6001 gcttggtcgg cgacatgtcg atgaccagcg ggcccaagtg aatcggtgtc caacgtggca
     6061 gcgccagctc gcacacgaag cccggatgca ggcacggata atcgatcgcg tgcgcgtccg
     6121 tgatgtgcgg cgtgatgatg tcgattgcgg gaccggcttg cagcatctat ttggtaagca
     6181 agaagggttc gaagagcgtc gtgacgaaca gtattaccac cagggacaac agcgccggcg
     6241 ccatttgcag acccagcgcc gggattatcg cgaaaccgta gacaagtacc gcaagaagcc
     6301 ggagcagcgc gcccatcccc catccaacca gcagccgatc ctttccgaac gaccgtccaa
     6361 caagcaccgc gagcacctgt acgacaactg cgactccaac ggaagtccag atcgcccgac
     6421 tcatctcgcc ggtcacggtt tgcccctgtc ctggtcggtc tgtgcagcca tgagcttgcg
     6481 atacatgctg tagaacgccc cgcccgctcc caggaaaaca ccgattatca gcaaccacgg
     6541 tcccgttccc agccgccggt ccagccactg cccggcgtag ccgaagagaa gcaccgaggc
     6601 cgcgaactga agcccgattc cggcgaaatc cgacgccgat ggcgcactcc ccttgtcccc
     6661 cacgtgcctg aaatttaacg cgcttgtgaa aaaaagttca agccaccggc catatatatg
     6721 cgctcaccgg atgtttgccg tttggcaccc caaatcccga atttgtgatc cgagcctaaa
     6781 tgccgatact ccaatcagtt atctgttacc gagcgcttgc tccatcgtct atccgttgat
     6841 aactttggca ctcgcgacga ccgtccgaca accgccttcc agcgtcgctt caagcatgga
     6901 aaaccgcttc atcatcacat ccctttgcgc tgccgcgctc gtttacgcgt gcggaccatg
     6961 ggtgcacgaa caaaccgcaa gctcgagtcc ggtaacgccc tcgaacaggt cctttcgcgc
     7021 atcgacaggt cataaagcgc ccgcagacgt tgcaaccgag ctcgatctcg cgcgcaacgg
     7081 gtcgcgcatc gatttcgcac tgcgtgtaac caacaacact cacaagaccg tcgagttgcg
     7141 cttccccaat gcgcgcacgc acgacatcgc ggttcttgat tccacaggca agacagtctg
     7201 gcgcgcaagc gccggcagac tcttcactca gacgatgcag gcgctcaccg tcaagtcgag
     7261 tgatacgctt acgatggaag acagctggga caccaatggc gcgcatggcg catacaccgc
     7321 cgttgcactg ctggccacgg acgcgcaccc ggtcgaaaga cgcgtagcgt tcacgcttcc
     7381 gtgacctgaa caagtgcgac gctgacatgc cgttgagacg ttgatcgaga cgttgattga
     7441 tatgttgatc catcgcgccg cactttctcc agcagttctg ctctcaactg cattcgccct
     7501 gctcgcgacg caggcgtgca cccacaacac ggtcaacaac gatccacccg gcgtcacatc
     7561 ggagcagaag atgtacgttg cgggtgagtt gcgcacgtac ctgttgcaca taccagcaca
     7621 ctacgacacc atacgcagag cgccgctcgt aatagcgttg cacgggcacg gaggaagcgc
     7681 cgagaacttc gagaagttca ccggaatgag tgacaaggca gacgccgaag gtttcatcgt
     7741 cgtgtatcca caagcactgg gcgatcccag cgactggcat accgcgatcg acggaccgtc
     7801 aaagcgcgat gacatccggt tcgtgcgcga gataatcgat ctgctcgaac acaagtaccg
     7861 gatcgatcgg caccgcatct atgcagccgg acattccaat ggtggcatca tgacgtaccg
     7921 tctcgcgtca atgctgtccg acaagctcgc cgcggttggt gtgaccgcgg gctcgatcgg
     7981 aatgatcgat gaaaaaggag acacggtgcg cattgcgccg cctgcacatc ccgtgtcggt
     8041 gattcacttt cacggaatgc aggaccagga cgtgccgtac aggggcggcc ccgaatcgga
     8101 cggccccgac aacatcgtat cggtcaggaa cacgatcggc ttctggctca atgccgatca
     8161 ttgcaccgcg acaccagcgt cgcgaaccgt ctccagggac cggaacgtca tcatcgacgc
     8221 atatgagccc tgcgccaagg gaaccgccgt cgagctctac accatcgtcg acggcgcgca
     8281 ccgctggccc ggcgacgaca tcccgtggta caccttcccg agtcgcgacg actccgacgt
     8341 catcgccaca gacgtcatgt gggatttctt cgccgcgcat ccccgcgtgg attgatcgct
     8401 ggagcgcgct tggagcgcgc agtgcgttgg agcgcggtgc gttgggcccc gcgcctgccc
     8461 tattcctccg tagcccgacc cttgcatcat gcctccgcat gacccaagcc caacgcaagc
     8521 atctagaggg ccgcctcctc caggagcgcg accgcatcaa tcagctcctc gcccgctacg
     8581 ccgcgcagaa cgagaacgag gatgaccagg accagtccgg cgacattacc aagatgccgc
     8641 tccacatggc cgatcagggc accgacacca tgcagcagga gctggacgcc gtgatggtcg
     8701 accgcgagtc caagaccctg gccgagatcg atgcagccct gcagcgcctg tacgaccacc
     8761 cggagacata cggcatctgc gagaacaccg gcaaggagat cccgttcgag cggctggata
     8821 tcgttccctg ggcgaggacc tgctgagcga cggtagcccg gcgaatcgcc caaaacagga
     8881 aacttcgagc caggccggtt ccggatcgca tcgctagaaa atcatcggtt cgtttctaac
     8941 ggtgatttgg atcattactc ttgcggctcc tcttcaacga cggagctctc ttggttcaac
     9001 cagccagcac aagcatcctc gacgattgcc cggatcgatt tgttttacgt ctttccaaaa
     9061 ccaaacgaat cttgccaact agggtagcat tatgctacct tactcgtgtg aatggcctcg
     9121 ggtgaccggt acggctaccc cgaatacgac ctccgcgaca tccagcagcg tgtacgcgat
     9181 ggacgataca gaatggcagt tcgggcagcg aacgacgcga gtcgtctcgg gctcgcggat
     9241 tcggttgtgc agtgcgtctg cgcgctcaag cctgcgagaa tacgagatgg aggaaatttc
     9301 cataagtcca tgctcgccaa acgagcaccc gcgattgcgc aaggtctctg gcaagacgtc
     9361 tatctgatcg actgggaaga cgagctgctc tatgtaaagc ttcacgttgg gcgcaacggg
     9421 ct
//
LOCUS       DATIMD010000126         8459 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3801962, whole genome shotgun sequence.
ACCESSION   DATIMD010000126 DATIMD010000000
VERSION     DATIMD010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8459
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3801962"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1520)
                     /locus_tag="VLI40_02855"
     CDS             complement(<1..1520)
                     /locus_tag="VLI40_02855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96137.1"
                     /translation="MTLPFILSVTLVTQQNQTASPRDAIRAEPVILEVKIGTVASTVL
                     VARRVGDVALLPVTPVLALAELHRVSEQDEYLSVDSLAVMLHVPISVDWDELTVTIAG
                     DGRFPIIRRAVREHQRALLNAARDDPRVLHAIDRAAPLLPRNLIVDYDATTSTPSSVA
                     QAGIRLGLGANFIGGALDVDVLRAAKQRPGIAAWHWDREFPRAAFLRYARVGRIPYSS
                     NSAIGAGLFLSSDPPSRDDTPPVTLVGMLGPDSDMEVYRDDLLVYSGETDSFGSYRIP
                     VPASLGSHRITVMSYGPGGEQRSATRYVSVSANTLAAHATAYDVAIGRCASTACDHAV
                     ETMVRYAPAERLTAGAGLRIATGVQQRARVQPSVLLATRLRDDLNASLGYAREATSAG
                     LQYAPAQAFDASLMYASTRANSTSPTPPVRHATMGASAILRIPHTGYSASAALTLAGY
                     ELGDTRRLDFAISLPVGFLYLRPFIDAAHQFNATSPSLERGVYAEGPIPFWLPIGSR"
     gene            1884..2345
                     /locus_tag="VLI40_02860"
     CDS             1884..2345
                     /locus_tag="VLI40_02860"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HSU96138.1"
                     /translation="MAVTAMGYSGKPWVHGPAAALLASYVDHRGSLEGSRAINLANTL
                     ATSVSKSCDWLLKHRAPPPGRHSPREQSFPSGHTLETASVALTAAHVLWREGIADPRI
                     AFPIAVMIPVLEGAGRLYLDRHWTTDVIAGFLAGVTVAAVCVFGYEERVYR"
     gene            complement(2402..3772)
                     /locus_tag="VLI40_02865"
     CDS             complement(2402..3772)
                     /locus_tag="VLI40_02865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HSU96139.1"
                     /translation="MSRPKSLFGAVPAGILTRSDAEALGKRVLSFATADETSVNINSN
                     ARANTRFAVNQVSTAGDDTDTTLSIRSTFGKRSASVTTNKTDDASLAAAVKAAEELAR
                     LSVEDPEAMPGLGPQTYPPERSQSISFPEAAERARAVKAVTDRARAAGFVATGYIESR
                     VGTRALINSHGLFAFEQSGGCSMTATVRTPDGTGSGWGGANANDWSGIDADAVGATAT
                     EKAGKSRNPVAVEPGRYTVVLEPTAVGNLIPIIAFSAQARSADEGRSFFSKQGGGNKI
                     GMKVADERVTLVSDPADNIGSSITGDGRPTEKVVFIENGILKNLNYDRFWAQKQGKEP
                     TGLAFGCMRLMGGDSSIPQMIASTERGILVTRFWYIRPVDQRTILFTGLTRDGTFLIE
                     NGKVTHAIKNFRYNESPIFMLNNVEAFGAPVRVSASEDSSPGAAVIMPPLKIRDFNFT
                     SLSDAV"
     gene            complement(3769..5388)
                     /locus_tag="VLI40_02870"
     CDS             complement(3769..5388)
                     /locus_tag="VLI40_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HSU96140.1"
                     /translation="MTHSRRDFIKTVSAVAATSAIGTRGLGTVDRLISPTGSSVGDPT
                     YRELTQVALDAARSAGATYADIRISARRSQRISTRENRLQGADDSDTLGFGVRALSNG
                     AWGFAASNILTRDVVAQIARDAVAIAKANSAVQLKPIVLAPAPAATGEWKSPIKIDPF
                     DVPITDKVALLLAANAAALKVQGARFVTSNMFFLREEKTLATSDGTFVVQTIYRAQPS
                     MNVTAVSADFADFQSRQSNDVAPMGLGYEYVTGANMVENATRWANEAVQKLSAKSVDV
                     GRYDLVLHPSHLWLTIHESVAHPTELDRAEGFEANYAGTSFVSPPEKMLGKLKFGSPL
                     MNIRGDRTQHGSLSAIGWDDEGVKPDDFMIIKNGILQDYQTTREQAMQLDWWYKSQGK
                     PTRSHGCSYGQSWQDVQFQRMPNVSLLPGEKDISYEDIIAATDRGIAIIGDGSFSIDQ
                     QRYNAQFGGQVFYEIKGGKIVGMLKDVAYQMRTPDFWGSLDMIGGQKSYELGGAFSDG
                     KGQPSQSNAISHGCVPSRFRNINVINTGRKA"
     gene            6050..6358
                     /locus_tag="VLI40_02875"
     CDS             6050..6358
                     /locus_tag="VLI40_02875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96141.1"
                     /translation="MTGTTQPAGPTDDVSFAKNLGVDQTSDTTEKVKEAAQRGAASAE
                     DAMSQLQAKASEITSNLINKVNVDELTAKLEEQVREHPARTLMFAAGAGFLLGRAAKK
                     "
     gene            6361..6789
                     /locus_tag="VLI40_02880"
     CDS             6361..6789
                     /locus_tag="VLI40_02880"
                     /inference="COORDINATES: protein motif:HMM:NF018980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HSU96142.1"
                     /translation="MSAPWVRDIASRRSLGELLGELTDGSAELVRDEIRLARAETVES
                     LLTLRRGVILLGIGIGFALCAAAAGLACIIMVISQYLLSDRTWLAALIVAVVLGVIGW
                     LCVWRSGRSFSASELAPHETATSIKETGVWLKHPTRSAAR"
     gene            6753..7157
                     /locus_tag="VLI40_02885"
     CDS             6753..7157
                     /locus_tag="VLI40_02885"
                     /inference="COORDINATES: protein motif:HMM:NF023697.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3618 domain-containing protein"
                     /protein_id="HSU96143.1"
                     /translation="MAETSHEIRRQIDDTRARLGSTIAAIERKVDPHRIVDEHALALV
                     GVAFGTGVLLSTTGATGRAVHEVRDQVKQGATRINDTAGNALDGIVDAIMGAATAAIV
                     EKLSELLQVAGNASDSKRNQVDAGRKAQVRAA"
     gene            complement(7262..7705)
                     /locus_tag="VLI40_02890"
     CDS             complement(7262..7705)
                     /locus_tag="VLI40_02890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96144.1"
                     /translation="MLRISTLIAAVTLAGALAAHPASAQDTTHHGGVNGAARAVSGAA
                     KSTGRAVKSGAKSVGSETHKVLKSAGRGTKSALSHAVGDTNHNPNHKPGGLNKAARDV
                     SASVKHVGRSAKAGVHEGASDTHKALQKTGNDVKKKAAGDTSHTP"
     gene            7900..>8459
                     /locus_tag="VLI40_02895"
     CDS             7900..>8459
                     /locus_tag="VLI40_02895"
                     /inference="COORDINATES: protein motif:HMM:NF037667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96145.1"
                     /translation="MAAPTLFFTNPALAQRASLPNVSVLMGAGISRQLADYRASRISN
                     VRYDLSLDVTAHDTARGHVTIAFVRSGTGDAIVDFRGPQLGTVILNGVALPVDVSNGM
                     HIRLPAASLKHGDNSVSMGFSALIAPAGASVIRYHDITDGADYLYTLLVPSDANQLFP
                     CFDQPDIKARTALTLTIPKQWNAVGNG"
BASE COUNT         1586 a         2477 c         2735 g         1661 t
ORIGIN      
        1 cggctaccaa ttggaagcca gaacggaatc ggaccctctg catacacccc gcgttcgagc
       61 gacggcgacg ttgcgttgaa ctggtgtgcg gcatcgatga acgggcgcag atacaggaac
      121 ccaactggaa gcgagatcgc gaagtcgagt cgccgtgtat ctccgagctc ataccctgca
      181 agggtgagag ccgcgctcgc cgaatagccg gtgtgcggaa tgcgcaatat tgcgctcgcg
      241 cccatggtgg cgtggcgaac cgggggtgtc ggcgatgtgg agttggcgcg cgtgctggcg
      301 tacatgagag acgcatcgaa cgcctgtgca ggggcgtatt gcaggcctgc gcttgtcgct
      361 tcgcgagcat aaccgaggga cgcgttgaga tcgtcacgca ggcgcgtcgc aaggagcact
      421 gacggctgaa cccgagctcg ttgctgtact cccgttgcaa tgcgcaaacc cgcgccggcc
      481 gtaaggcgct cggctggtgc atatcgcacc atcgtttcca ctgcgtgatc gcacgctgtg
      541 ctcgcgcagc gcccgattgc gacgtcgtac gccgtcgcgt gcgcggccaa tgtgttggcg
      601 gagacagaga cgtagcgtgt ggctgagcgc tgttcgccgc ccgggccgta tgacatgacg
      661 gtgatgcggt gcgagccgag cgaggcgggg accgggatcc tgtaacttcc gaaggaatcc
      721 gtctcgccgg agtacacgag aaggtcatcc cgatagactt ccatgtccga gtccggaccg
      781 agcattccca ccagcgttac aggtggcgtg tcgtcgcggc tcggcgggtc gctggagaga
      841 aacaagcctg caccgatagc ggagttgctg ctgtaaggga tacgtcctac gcgcgcatag
      901 cggagaaacg cggcgcgtgg aaactcccga tcccagtgcc atgcggcgat tcctgggcgc
      961 tgcttcgcag cacgaagcac atcgacatcg agcgcgccgc cgataaagtt cgcgccgagg
     1021 ccaaggcgga tgcctgcctg cgctacagaa gatggggtag atgtcgttgc atcgtagtcg
     1081 acaatcagat tgcgtggcag caacggtgcc gctctatcga tcgcgtgcaa cacccgcgga
     1141 tcgtcgcggg cagcgttgag cagagcgcgc tggtgttcac ggacggcacg gcggattatc
     1201 ggaaatcgac catcgccggc gattgtgacc gtgagctcat cccagtcgac cgaaatcggc
     1261 acatgcagca tcacagccag cgaatcgacc gataagtatt cgtcttgctc actcacgcgg
     1321 tgaagttctg cgagcgcgag gacaggagtt actggaagca atgccacgtc accgacgcga
     1381 cgcgcgacga ggactgtcga agcgacggtg ccgattttta cttcaaggat taccggctcg
     1441 gcgcggatgg cgtcacgcgg acttgcggtc tgattctgtt gtgtgacgag cgttacagaa
     1501 agaatgaatg gcagggtcat cacggcgggt agtcgatgct gtccgaaggg gcggaaagca
     1561 atcttctacc gtgcgcggga gcgggctgtg gcatgagtcc gtagggcgga gcaaaacatc
     1621 gcatggtatc gttggcaacc acagcggccc agcccgcgag caacggtgtt cgggcggaag
     1681 tggaatagct cttgcgcgta cgcaatgtca tgcatcgacc ccgtgcacga cacagaattc
     1741 caactgcgcc aatagcggcg actgcgctcg gcggtgccgc gggatttaca gtggtgtcag
     1801 ggcttgttgc caagagaatg acgaaagaat tcgaccgtgc cgtacgaaac aaaatcggta
     1861 cccggcacgg ccggcgatcc aagatggctg taacggcaat ggggtattcc ggtaaaccgt
     1921 gggtgcacgg tccggctgcg gcgctactcg ccagctacgt cgatcatcgc gggtcgctcg
     1981 aaggatcgcg cgcgatcaat cttgcaaata cgcttgcaac gagcgtcagc aaatcatgtg
     2041 actggctgtt gaaacaccgt gcgccgcctc cagggcgtca ttcaccgcgc gagcaaagct
     2101 ttccgagtgg tcacacactc gagactgcgt cggtcgctct gaccgcagcg cacgtgctct
     2161 ggcgcgaagg gatcgcggat ccgcgaatcg cctttccgat cgccgtgatg attcccgttc
     2221 tggagggagc gggtcggctc tatctggacc gacactggac cactgatgtg atcgccggat
     2281 tccttgcggg agtcacggtg gctgcagttt gcgtgttcgg atatgaggag cgggtgtatc
     2341 ggtgaggatg acgaatgatg gggaggcacg aatacatccg tgcctcccca tcattcgcct
     2401 gctacactgc gtcgctcaga ctggtgaagt tgaagtcacg tatcttgagc ggcggcatta
     2461 tgaccgcggc gccggggctg ctgtcttcac ttgcgctcac tcgtaccggt gcgccgaatg
     2521 cttccacgtt gttgagcatg aagattggcg actcgttgta gcggaagttc ttgatcgcgt
     2581 gcgtgacctt gccgttctcg atcagaaacg tgccgtcgcg tgtgagaccc gtgaacagaa
     2641 tcgtgcgctg atcgacgggg cgaatgtacc agaaacgcgt gacgagaatt ccgcgctcgg
     2701 tgcttgcaat catctgcgga atcgatgaat ccccgcccat gagacgcatg catccgaagg
     2761 cgaggcctgt cggttccttg ccctgcttct gcgcccagaa gcgatcgtag ttgaggttct
     2821 tgagaatgcc gttctcgatg aacacgacct tctctgtggg gcgaccatcg ccggtgatgc
     2881 tgctgccgat gttgtctgcg ggatcggaga cgagggtgac tcgctcgtcg gcgactttca
     2941 ttccgatctt gtttccgcca ccctgcttgg agaagaagga tcggccttcg tcagccgagc
     3001 gcgcctgcgc cgagaaagcg atgatcggaa tgagattacc gacagctgtc ggctcgagga
     3061 cgacagtgta acgacctggt tctacagcaa ccgggttgcg ggacttccct gctttctcgg
     3121 tggccgttgc gccgactgca tcggcgtcga tcccggacca gtcattcgca ttcgccccac
     3181 cccaacctga accggtgcca tcgggcgtgc gaaccgtcgc ggtcatgctg cacccaccgc
     3241 tctgctcgaa ggcgaacagt ccgtgtgagt tgatgagtgc gcgcgtgccc acgcgagact
     3301 cgatgtaacc agtcgcgacg aatccggcgg cgcgtgcacg atccgtcacc gccttcacag
     3361 cgcgtgcacg ctcggcggct tccgggaagg agatgctctg cgaccgctcg ggcggatacg
     3421 tctgcgggcc gaggcccggc atggcttcgg gatcctccac gctcagacgc gcgagctcct
     3481 cggccgcctt cacggccgcg gcgagtgaag cgtcgtcggt cttgttggtg gtgacgctcg
     3541 cagagcgctt tccgaacgtg ctgcggatcg agagcgtcgt gtcggtatcg tcaccggcgg
     3601 tagagacctg attcaccgcg aagcgcgtgt tcgcacgcgc gttgctgttg atgttgactg
     3661 acgtttcgtc ggccgtggcg aatgacagga cgcgcttgcc gagcgcttct gcgtcggagc
     3721 gtgtaaggat gccggctggt acggcaccaa atagcgactt cggccgactc atgcctttct
     3781 cccggtattg atgacgttga tgttgcggaa gcggctcgga acgcagccgt gacttatcgc
     3841 gttcgactgg ctcggctgac ccttgccatc gctgaacgcg ccgccgagct cgtaggattt
     3901 ctgtccaccg atcatgtcga ggctgcccca gaaatccggt gtgcgcatct ggtatgcgac
     3961 gtccttcagc atgccgacga tcttgccgcc cttgatctcg tagaacacct ggccgccgaa
     4021 ctgcgcattg tagcgctgct gatcgatcga gaacgagccg tcaccgatga tcgcaatgcc
     4081 gcgatcggtg gctgcgatga tgtcctcata gctgatgtcc ttctcacccg gcaacaacga
     4141 cacgttgggc atgcgctgga actggacgtc ctgccacgac tgtccgtatg aacaaccgtg
     4201 tgagcgtgtc ggcttgccct ggctcttgta ccaccagtcg agctgcatcg cctgctcgcg
     4261 cgtggtctgg taatcctgaa ggatgccgtt cttgatgatc atgaaatcat ccggcttgac
     4321 tccctcgtcg tcccaaccga tggcggagag cgatccatgt tgcgtgcggt cgccgcggat
     4381 gttcatgagc ggagagccga acttcagctt accgagcatc ttctcgggcg gactcacgaa
     4441 gctcgtacct gcgtagttcg cttcgaagcc ttcggcgcga tcgagctcgg tcggatgcgc
     4501 aaccgattcg tggatcgtga gccagaggtg cgacggatgc aggacgagat cgtagcgacc
     4561 gacgtcgacg gatttcgctg acagcttctg cacagcttcg ttggcccagc gtgtcgcgtt
     4621 ctcgaccatg ttcgcgccgg tgacatattc gtaaccgagt cccatcggtg cgacatcgtt
     4681 ggactgacgg ctctggaaat cggcgaagtc ggctgagacg gcggtcacgt tcatcgacgg
     4741 ctgcgcacga tagatcgtct ggacgacgaa ggtaccgtcg ctggtcgcga gcgtcttctc
     4801 ctcacgcagg aagaacatgt tcgacgttac gaacctggct ccctgaacct tgagtgcggc
     4861 agcatttgcc gcgagcagca gggcgacctt gtcagtgatt gggacgtcga acggatcgat
     4921 cttgatcggg ctcttccact cgccagtcgc cgccggcgcg ggagccagga cgatcggctt
     4981 gagctgtacc gcgctgttag cctttgcgat tgccactgcg tcacgagcta tctgtgcgac
     5041 gacgtccctg gtgagtatgt tgctcgccgc gaacccccat gcgccattgg ataatgcgcg
     5101 gacgccgaat ccgagcgtgt cgctgtcgtc cgcaccctgc agtcggttct cgcgagtgct
     5161 gatgcgctgc gagcgtctgg cagatatccg aatgtcggcg taggtcgcgc cggcggaacg
     5221 ggccgcatcg agggcaacct gtgtcagttc ccggtacgtg ggatcgccga cggaggagcc
     5281 agttggcgag atgaggcggt cgacggtgcc gagaccacga gtgccgatgg cgctcgtggc
     5341 agcaacggcg gataccgtct tgataaagtc gcggcgagaa tgggtcattg cacttgtaag
     5401 ggtgagtgcg atctgctgct acatggaagt gctacggtaa agctgtggag tgtgttgaaa
     5461 cagcttgaaa cggcttggac cggcttgaaa gagagccgac cggagttccg gtcaagcggg
     5521 agcgatgacg aaagttcccg acgatgcgat tgccatgatg gcgccgaatt gcggagccgg
     5581 cgcccattcg agaggcgggc gcggcgttgc gccccttgga ggcgccccgt gtcgctcggc
     5641 ggcatcgcgg gcgcgatctt cgtttggaaa ctcgcccacc ctgtaacccg ggcgaccgag
     5701 tggtgtgaat gtgagcacaa atcgagtcgg catggctgtc ggcggaagtc tcctaaagag
     5761 tgtgaaccga aaataagctc ccgcgacgca tacggccatt cggcgcaaga atccagcgga
     5821 tcaatcgtgc ggttgcgtcg ggcgcggcgc gcctatggca tgtggtgggg cgcgctaccg
     5881 cagcacccac aggcgcgcga ctgtccgagc ggatagctgc gagcgtgcgg aatccacatt
     5941 cctttcacac tgtagtcaga ccacggagag catgatgacg acacctgaaa tgagcacacc
     6001 ggggggcgca ggatacggaa cgggtacctc gcaagggagc acagatacca tgaccggcac
     6061 cacacagccg gccgggccga cggatgatgt ctccttcgcg aagaatctcg gggtcgatca
     6121 gacgtccgat acaacagaaa aggtgaagga ggccgcgcag cgcggggcgg caagcgcaga
     6181 agatgcgatg agtcagctac aggcgaaggc aagtgagatc acgtcgaatc tcatcaacaa
     6241 ggtcaacgtg gacgagctga cggccaagct cgaggaacag gttcgggagc accctgcgcg
     6301 gacgctgatg tttgctgccg gcgccgggtt tctgcttggc cgcgcggcca agaaataacc
     6361 atgtccgcgc catgggtacg cgacatcgcg tcccgccgat cgctcggtga gctgctgggc
     6421 gagctcacgg acggcagcgc ggagctggtg cgcgacgaga tccggctggc tcgcgcggaa
     6481 acagtggagt cgttgctgac gttgcgacgc ggcgtgattc tgctcgggat tggtatcgga
     6541 ttcgcgctct gcgcggcagc cgcaggcctg gcgtgcatca tcatggtcat ttcgcagtat
     6601 ctgctgagcg atcggacctg gcttgcggcg ctcatcgtcg ccgtcgtact gggcgtgatc
     6661 ggttggttgt gcgtgtggcg aagtggccga tcattctccg cctcggagct cgcaccgcac
     6721 gaaactgcaa cgtcaatcaa ggagacggga gtatggctga aacatcccac gagatccgcc
     6781 gccagataga cgatacgcgc gcgcgcctcg gcagtacgat cgcagcgatc gagcgcaagg
     6841 tcgatccgca tcgcattgtc gacgagcacg cactcgcgct cgtaggcgtc gcgtttggaa
     6901 cgggggtgct gttatccact accggagcga cgggccgcgc agttcatgag gtgcgcgatc
     6961 aggtcaaaca gggagcaacc aggatcaacg acactgccgg gaacgctctg gacgggattg
     7021 tagacgcgat catgggcgcc gctactgcgg ccatcgtcga gaagctgtca gagctcctgc
     7081 aggtggcggg aaacgcgtcg gacagcaagc gaaatcaggt ggacgccgga cgtaaggcgc
     7141 aggtgcgcgc cgcataaaca gcgcgcacct gcagggaatg cgtaagacgg atatcgcggc
     7201 gtccagctgc ctccgatgac gcgtaaacgg gccaggcgcg ggttcatccg cgcgctgcgc
     7261 tttacggcgt gtgggatgtg tcgccggctg ccttcttttt cacgtcgttg ccagttttct
     7321 gcagggcctt gtgtgtatca ctggctccct cgtgtacgcc tgccttggca gaccgtccaa
     7381 catgcttgac tgaagcgctc acgtcgcgcg ccgccttgtt gagtccgccc ggcttgtggt
     7441 tcggattgtg gttcgtgtcg ccgacggcat gtgacaacgc cgatttcgtg ccgcgacccg
     7501 ccgatttcag gaccttgtgc gtttcgcttc cgacgctctt cgccccggat ttcacagcgc
     7561 gccccgtgct ttttgccgca ccgctcactg ctcgcgcggc gccattgacg ccgccgtggt
     7621 gcgtggtgtc ctgcgctgat gcaggatgtg cagccagtgc gccggcgagc gtcactgctg
     7681 cgatcaaagt cgatatgcga agcatcgtgc ctctctgaat gggttcgcca gtagttccag
     7741 tcgaaccaga aggtgcaaga ggcgggctaa tccccaatcc gagcacgcaa tctcccagct
     7801 aaactcgacg accgttttcg aacgatcgtt ctacaacctt gcgatcgatg tctttcgggg
     7861 gcatcgtctt gcatgcgatt ctcgactgtt ttcggcgtta tggctgcgcc aacactgttc
     7921 ttcacgaacc cggccctggc gcagcgcgcg tcgttgccga acgtgtcagt attgatgggc
     7981 gcaggcatct cacggcagct tgccgattat cgcgcgtcgc gaatcagcaa cgtgcgctac
     8041 gatctgtcgc tggacgtgac cgcgcacgac accgcgcgtg gtcatgttac aatcgcattc
     8101 gtgcggtccg gcaccggtga cgcgatagtc gattttcgcg gcccgcaatt gggcacggtg
     8161 atcctcaacg gcgttgcact gccggtggac gtaagcaacg gcatgcacat ccggctaccg
     8221 gccgcgtcgc tcaagcatgg cgacaatagc gtatcgatgg gcttctcagc gctcatcgct
     8281 cctgcgggcg caagcgtgat tcgatatcac gatatcaccg atggtgcgga ctatctctac
     8341 acgctgctgg tcccttccga cgccaatcaa ctctttccgt gcttcgacca gccggacatc
     8401 aaggcacgaa ccgcgctgac gctcaccatt cccaaacaat ggaatgcggt cgggaacgg
//
LOCUS       DATIMD010000127         1872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_49378, whole genome shotgun sequence.
ACCESSION   DATIMD010000127 DATIMD010000000
VERSION     DATIMD010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49378"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(193..1179)
                     /locus_tag="VLI40_02900"
     CDS             complement(193..1179)
                     /locus_tag="VLI40_02900"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HSU96146.1"
                     /translation="MANVFAFAETRNGELRKIALEAVTAARTIADSTGGQVHAFVAGA
                     AGIEKCAAQLAQYGADEVIVAEHAAFERYNPEAVAAIVAERVRTGGYRVAIFPTSALG
                     SDLAPRVAAKLGVGLVTDVTGIKLDGDAVLVKHPVNIGKVLATVKIASNPALVAIRAN
                     MFTPVENPRAGTVQHAALVGDPAASRVVVKEVKLGGGTKLDLGEAPVIVSGGRGLKGP
                     ENFHLVEELADAFGNAAVGATRVVTDEGWRPHSDQIGQTGRLVSPQLYVAVGISGAIQ
                     HLAGMRTSRTIVAINKDKEAPIFKVADYGIVGDLFAIVPALTAAVREARARG"
     gene            complement(1182..>1872)
                     /locus_tag="VLI40_02905"
     CDS             complement(1182..>1872)
                     /locus_tag="VLI40_02905"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HSU96147.1"
                     /translation="IGNAVDEAGLKFDMNDFDSWAVEAALQIKDRDAATEVVIMSLGT
                     DAVQETIRKALAMGADRGVELRAEHIPFDGLAIARALAAELKDGGYDLILFGKQSADS
                     SNGVVGAMVGELLGLPVVTAISKLEISGQTGSAKREIEGGQEFVEFPLPAVLTIDQGL
                     NTARYPALKGIMAAKKKPLEVKPAQLGAQTVSVTQMELPPERAPGRIIGEGVAAVPEL
                     VRLLQTEAKVL"
BASE COUNT          336 a          624 c          522 g          390 t
ORIGIN      
        1 aggatgagat tgcgaattct ggtcgctgga ttgccgctgc gatcgtccgg cccacccacg
       61 gtgagcatgt atcgcacgag ccgctgcgcg ttgtaggaaa agaacgccag cgcgagcacc
      121 accacgaata tgaatatgcc gtgtccgacg gtcatcgcgc gaatctccac agtgggttca
      181 gcgtgtcgca gctcaccctc gggccctggc ctccctgacc gcagctgtga gtgcgggaac
      241 gatcgcgaag aggtcaccaa ctattccgta atccgcgacc ttgaagatcg gtgcttcctt
      301 gtccttgttg atcgcgacga tcgtcctgga ggtacgcatt ccggccagat gctggatcgc
      361 gcctgatatt ccgaccgcga catacagctg cggacttaca agtctcccag tctgcccgat
      421 ctgatcacta tgcggacgcc atccctcgtc ggtgacgacg cgcgtcgcgc cgaccgctgc
      481 gttgccaaat gcgtccgcaa gctcctccac gagatgaaag ttctccggcc ccttgagtcc
      541 gcgcccaccg ctgacgatca cgggcgcctc gccgaggtcc agtttggttc caccgcccag
      601 cttcacttct ttcaccacaa cgcgcgatgc agcgggatca ccgaccagcg ccgcatgctg
      661 taccgttccc gcacgcggat tctctaccgg tgtgaacatg ttggcacgta ttgccaccag
      721 ggccggattc gacgcgatct tgacggtcgc gagcaccttt ccgatgttca ccgggtgttt
      781 tacgagtacc gcgtcaccat ccagcttgat cccggtaacg tcggttacga gtcccacgcc
      841 gagctttgct gcgacgcgcg gcgcgagatc gctcccgagt gccgatgttg gaaaaatcgc
      901 gacacggtaa ccgccagtgc gcacgcgctc ggcaactatc gccgcgaccg cctctggatt
      961 gtatctctcg aaagcagcat gttcggcgac gatgacctcg tccgcgccgt actgcgcgag
     1021 ctgagctgcg cacttttcga tgcccgcagc gccagcgacg aacgcgtgca cctgcccgcc
     1081 ggttgagtcc gcaatcgtgc gggccgcggt cacggcttcg agtgctatct tgcgaagttc
     1141 gccgttgcgg gtctccgcga atgcaaatac gttggccatg gttatagaac ctttgcttca
     1201 gtctggagca gtctcacgag ttcaggcaca gctgcaacgc cttcgccgat gatgcgtccg
     1261 ggtgcgcgct cgggcggtag ttccatctgc gtcacagaca cagtctgcgc acccaactgc
     1321 gctggcttca cctcgagcgg tttcttcttc gccgccatga tgcccttgag cgctggatag
     1381 cgcgcggtgt tcaatccctg atcgatggtc agtaccgccg gcagcggaaa ctcgacaaac
     1441 tcctggccgc cttctatctc gcgcttcgcg gatcccgtct gtccagatat ttccagcttt
     1501 gagatcgcag ttacaaccgg cagccccaac agctcgccga ccattgcacc aaccactccg
     1561 ttggatgaat cagcggattg cttgccaaac agaatgaggt cataaccgcc gtccttgagc
     1621 tcggctgcga gcgcgcgtgc gattgccagg ccatcgaacg gaatgtgctc ggccctgagc
     1681 tcgacaccac gatcggcgcc cattgcgagc gccttgcgga tcgtctcctg caccgcgtcc
     1741 gtcccgagcg acatgattac cacttctgtg gcggcatccc tgtccttgat ctgcagcgct
     1801 gcctcgaccg cccatgaatc aaagtcgttc atgtcgaact tgaggccagc ctcgtccacc
     1861 gcgtttccga tg
//
LOCUS       DATIMD010000128         3353 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_629069, whole genome shotgun sequence.
ACCESSION   DATIMD010000128 DATIMD010000000
VERSION     DATIMD010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_629069"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(89..1351)
                     /gene="tyrS"
                     /locus_tag="VLI40_02910"
     CDS             complement(89..1351)
                     /gene="tyrS"
                     /locus_tag="VLI40_02910"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HSU96148.1"
                     /translation="MSDSDFLGELAWRGMLQQHTDGLPRMLSAGPVSGYAGFDPTAPS
                     LHVGHLVPIMGLAHLQRHGNHAYALVGGGTGMIGDPSGKTAERTLQTLDQVMANAESI
                     GGQLSRFLDFSGPNAATLRNNADWLLGMGAVEFMRDVGKHLTVNYMIAKDSVKSRMEA
                     GISYTEFSYMLLQAYDFVALRRRDGVTLQVGGSDQWGNMTAGVELIRRMDGAEAHAVT
                     FPLLTTASGAKFGKTEAGAVWLDADRTSPYQFYQFWINTDDRDVGKYLRLMTLLDRET
                     IESLESDVIEHPERRGAQNALALEITARVHGHETALIASEVSRVLFGRGEVSGLAPAV
                     LAALAKEVPGAIVSRGEPLSLTDLFVRAKLVKSKGEARRVADQGGAYVNGERAASGLM
                     LSEISPLAGSYILLRKGARDYAMIQIAG"
     gene            1512..>3353
                     /locus_tag="VLI40_02915"
     CDS             1512..>3353
                     /locus_tag="VLI40_02915"
                     /inference="COORDINATES: protein motif:HMM:TIGR02074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HSU96149.1"
                     /translation="MAGRTKKSRTLPIWKRHPTAFRIFLVTTILVVTFGVGLVYSAWV
                     LVCQGDRCPSIQALELYTPKQTSKLYAVDGRFIAELGTERRTLVKLSDIPKIVQDAFV
                     VTEDKRFYEHSGIDWYRAAGALVNNVRSGRYAQGFSTITMQLARNIFPERISRDKTII
                     RKIKEAKVAREIESKYSKQKILELYLNQINLGNGAYGVETASQRYFGKSVRDLNIAEA
                     ATLAALPKAPERYNPRRYPDRAIQRRNTIIELMRENGAISDADASLAKAYPLRLATKV
                     ESGETAPYFVEWVRQQLDQQFGNQLYTQGLNVYTTLDLDMQTAAERALERQLRAVEGG
                     KFGTYKHPSYESYIAKLSTGESGTGVSPYLQGAFIALDPRTGGVRAMIGGRDFYDSKF
                     NRATQALRQPGSTFKPIVYAAAIQAGKPASYIIDDSPVSVPQADGTTWEPQNYDLKFE
                     GPMTMRRGLYQSRNIIAVKTGMELGPQTVINEARNFGITTPIPPYPSIYIGSADVIPL
                     QLISAYTAFATLGVRAQPTGILRVENSHHQVIWQPTPSRTQVMTPEEAWLMVSMMKGV
                     VQRGTAYNSVWNAGFHIPAGGKTGTTNDGTNVWFVGYTADLVAGVWMG"
BASE COUNT          683 a         1080 c          949 g          641 t
ORIGIN      
        1 cgagcgcgga gccgaacgtg ccgccgatgt aggatggtgc gtaacgtcat ccccgctttc
       61 gcggggatga cgagcacttc gtgttgtgct atccggcgat ctgaatcatc gcataatccc
      121 gcgcaccctt ccgcagcaat atgtatgatc ccgcgagtgg acttatttcg ctcagcatca
      181 atccgctcgc tgcgcgctca ccgttcacgt atgcgccacc ctgatctgcc acacgcctcg
      241 cctcgccctt cgatttcacg agcttcgcgc gaacgaagag atcggtgagc gacaggggtt
      301 caccgcgcga aacgatcgcg cccggcactt ccttcgcgag cgctgcaagc acggctggtg
      361 caagtcccga tacttcgccg cggccaaaca gtacacgtga tacttcgctt gcgatcaacg
      421 ccgtttcatg accatgcaca cgcgccgtta tctcgagagc gagcgcgttc tgggctccgc
      481 gacgctcggg atgttcgatc acgtcggact cgaggctctc gatcgtttct cgatccagca
      541 gcgtcatcaa tcgcagatac ttgccgacgt cgcggtcgtc cgtattgatc cagaactggt
      601 agaactgata cggcgacgtg cgatccgcgt ccagccatac cgctcccgct tctgtcttgc
      661 cgaatttcgc tcctgatgcc gtcgtgagaa gcggaaatgt caccgcgtgc gcttcagccc
      721 catccatgcg gcgaatcagc tccacaccgg ctgtcatgtt gccccactga tcgcttccgc
      781 ccacctgaag cgtcacccca tcgcggcggc gtagtgcgac gaagtcatac gcctgcaaca
      841 gcatgtacga aaattcggtg taggagattc ccgcctccat gcgcgatttc accgaatcct
      901 tcgcgatcat gtagttgacc gtgagatgct tgcccacgtc gcgcatgaac tccactgcgc
      961 ccatgcccag caaccagtcc gcgttgttgc gaagcgtcgc cgcattcggt cccgagaaat
     1021 cgagaaagcg cgagagctgt ccgccaatcg actcggcgtt ggccatcact tgatccagcg
     1081 tctgcagcgt ccgctctgct gtcttgccgc tcggatcgcc gatcatcccg gtaccaccgc
     1141 caaccagcgc gtacgcgtgg ttgccatgcc gttgcaggtg ggccagtccc atgatcggaa
     1201 ccaggtggcc gacgtgaagc gagggcgcag tgggatcaaa gccggcgtaa ccggaaactg
     1261 gccctgctga aagcatcctg ggtagaccgt ccgtgtgctg ctgcagcatc cctcgccacg
     1321 ccagctctcc cagaaaatca gaatcagaca tcgcgggtaa tataaacagt ccccttgtta
     1381 gtgccttgtt agtgcctcgt agcaggccgt cggtcccgcc gcgccagtgt ccgtcccatg
     1441 gatgtcggtc gccgttgcca gacgtcagta gcagcgccgg cgaggtcagc tccgcgcctt
     1501 aaattcatcc catggctggt agaaccaaga agtcccggac gcttccgatc tggaagcgcc
     1561 acccgactgc ttttcgaatt ttcctcgtca ccacgattct tgtggtgacg ttcggtgttg
     1621 gattggtcta cagcgcctgg gtgctcgtat gccagggcga tcgatgtccg tcgatccagg
     1681 cgctggagct ttacacacca aagcagacgt ccaagctcta cgctgtcgac gggcgcttca
     1741 tcgcggagct cggtacggag cgacgaacgc tggtgaaact cagcgacatt cccaagatcg
     1801 tgcaggatgc cttcgtcgtc acagaagaca agcgcttcta cgaacactcg ggaatcgact
     1861 ggtaccgcgc cgccggtgcg ctggtcaaca acgttcggag cggccgctac gcccagggtt
     1921 tctcgaccat aaccatgcag ctcgcgcgaa acatctttcc cgagcgcatc tcccgtgaca
     1981 agacgatcat tcgcaagatc aaggaagcca aggtcgcgcg cgagatcgaa tccaagtaca
     2041 gcaagcagaa gattctcgag ctgtatctca accagatcaa cctcggcaac ggcgcatacg
     2101 gagttgagac ggcgtcccag cgctacttcg ggaaatcggt gcgcgatctg aacatcgccg
     2161 aagcggcgac gctggccgcg ctacccaaag cacccgaacg ctacaacccg cgccggtatc
     2221 ccgatcgtgc gattcagcga cgcaacacga tcatcgagct gatgcgcgag aacggcgcca
     2281 tctccgacgc tgacgcaagc ctcgccaagg catatccgtt gcgcctcgcc accaaagtcg
     2341 agtccggtga gacggcgccg tacttcgtcg aatgggttcg gcagcagctg gatcagcagt
     2401 tcggcaacca gctgtacacg cagggtctca acgtctacac gacactcgat ctcgacatgc
     2461 agactgccgc cgagcgcgcg ctggaacggc agcttcgcgc ggtcgagggc gggaaattcg
     2521 gcacgtacaa gcacccgagc tacgagtcat acatcgcgaa gctctccacc ggtgagtcgg
     2581 gaaccggcgt ctcgccgtac ctgcagggtg cgttcatcgc tctggatccg cggacgggtg
     2641 gcgtgcgcgc aatgataggc ggacgcgact tctacgattc caagttcaac cgcgccacac
     2701 aggcgctgcg ccaaccgggc tcgaccttca agccgatcgt ttacgcagcc gccattcagg
     2761 ctggcaagcc ggcgtcgtac atcatcgatg actcgcccgt atcggtgccg caggcggatg
     2821 gaacgacttg ggagccgcag aattatgatc tcaagttcga aggccccatg acgatgcggc
     2881 gtggcctcta ccagtcccgc aacatcatcg ctgtcaagac cggcatggag ctcggcccgc
     2941 aaactgtaat caacgaagca cgcaattttg gaatcaccac gccgatcccg ccgtatccgt
     3001 cgatctacat cggctcggca gatgtgattc cgcttcaact gatcagcgca tataccgcgt
     3061 tcgcgacact cggcgtccgc gcgcagccca ccggaattct acgtgtcgag aattcgcatc
     3121 atcaggtgat ctggcagcca acgccgtcgc gcacgcaggt gatgacgccc gaagaagcgt
     3181 ggctcatggt aagtatgatg aagggcgtgg ttcaacgcgg taccgcctac aactcggtgt
     3241 ggaacgccgg ctttcacata ccggccggtg gcaagaccgg cactaccaat gacggcacca
     3301 acgtgtggtt cgtcggctac accgcagatc tcgttgcggg agtctggatg ggg
//
LOCUS       DATIMD010000129         5463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4671824, whole genome shotgun sequence.
ACCESSION   DATIMD010000129 DATIMD010000000
VERSION     DATIMD010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5463
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4671824"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            87..890
                     /locus_tag="VLI40_02920"
     CDS             87..890
                     /locus_tag="VLI40_02920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96150.1"
                     /translation="MTTLLDTDSQGADKSAPYSGNDDGIARDDDPERSVQLDSPTLAG
                     EVTIMLGDLVERWRVQAMRALQGWATEKRTLRGLPVTLVNTRPDIDSELVFRRLDTAL
                     ALIQQYRPATFAQLLQDFSRIQVVRYPCRAAFYPDSRTCLVELTFSVNPEFTEAQIAS
                     SIVHEGMHAHVFAMGQSNPAERPDEERLCRQAELEFGLAIPNGEAIVRRATESLQLGD
                     EDVAPVIDWQQARQTIAEVDARATSRGGERDRERDRERDREGGSQSSRS"
     gene            887..1540
                     /locus_tag="VLI40_02925"
     CDS             887..1540
                     /locus_tag="VLI40_02925"
                     /inference="COORDINATES: protein motif:HMM:NF013933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HSU96151.1"
                     /translation="MIPPLHSLLLFMAAGLALNLTPGPDMLYVAARSTSEGRAAGIVS
                     SLGIATGTLFHITAVALGLAALLAAVPIAYTVVRIGGAIYLMYLGVRAFARRSPVATR
                     EVARASLATIFRQGAITNILNPKVALFFLAFLPQFVDPARGSAAAQIVVLGLIFDTSG
                     TIVNTIVALGASRAAERVRARMNVRVRADSKSADVLHRITGVIFIGLGLRIALASRR"
     gene            1593..2066
                     /locus_tag="VLI40_02930"
     CDS             1593..2066
                     /locus_tag="VLI40_02930"
                     /inference="COORDINATES: protein motif:HMM:NF024917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSU96152.1"
                     /translation="MAYQIRHAGRDDVAQLARLRYDFRSNLSAPIEDESDFIERCQAW
                     MTTRLGDGRWHCWVAEDGDRLIGNVWIQLVEKIPTPTDEPEEHAYLTNFFVLEAARGR
                     GIGSDLLSRVLEWSARRQVHAVFLWPTTRTRAMYERHGFLADGDAMQLLFVPRAQ"
     gene            2231..2743
                     /locus_tag="VLI40_02935"
     CDS             2231..2743
                     /locus_tag="VLI40_02935"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HSU96153.1"
                     /translation="MSPQGRRPNLSAGLLLFRRGAGSTALEFFLAHPGGPFWANRDDG
                     AWTIPKGGVEAGEAILDAARREFQEETGIAPAGPFIDLGSIRQRAGKVVHAWAFEGDA
                     DPATIVSNSMTTEWPRGSGRMITFPEVDRCGWFDAEAAHGRINAAQGELLTRLEQTLA
                     SGDGAGRKSG"
     gene            complement(2740..3126)
                     /locus_tag="VLI40_02940"
     CDS             complement(2740..3126)
                     /locus_tag="VLI40_02940"
                     /inference="COORDINATES: protein motif:HMM:NF016156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HSU96154.1"
                     /translation="MQPVARTFIALGSINAALAVILGAFGAHALKARLSPEMLSVYHT
                     ASQYHFYHALGMLLIAALASQLNSSGALRLSGFLMLAGVVLFSGSLYLLAVTGVTWLG
                     AITPLGGLAFIAAWVVLAYAALRAAS"
     gene            complement(3130..4119)
                     /locus_tag="VLI40_02945"
     CDS             complement(3130..4119)
                     /locus_tag="VLI40_02945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008612 - peptidyl-lysine modification to
                     peptidyl-hypusine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase family protein"
                     /protein_id="HSU96155.1"
                     /translation="MTDNSSKAPITAFIREHFRHFNAATVIDAADAYSKHLDNGGRML
                     VTLAGAMSTAEIGRSLADMIRQDKVHAISCTGANLEEDIFNLVAHDYYERVPHYRDLT
                     PSDEQALLERHMNRVTDTCIPEMEAMRRIESVVLEEWVAADQKKERLFPHEFMYRILR
                     GGKLKNEYQIDPKNSWMLAAMEKNLPMFVPGWEDSTLGNMYSGHVITGDVKNVHTVRT
                     GIEYMIELADYYTKLTRSTSLGFFQIGGGIAGDFPICVVPMLHQDLQRPEVPLWGYFC
                     QISDSTTSYGSYSGAVPNEKITWGKLGIDTPRYIIESDASIVAPLMFAMIMGQ"
     gene            complement(4149..5189)
                     /locus_tag="VLI40_02950"
     CDS             complement(4149..5189)
                     /locus_tag="VLI40_02950"
                     /inference="COORDINATES: protein motif:HMM:TIGR00730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HSU96156.1"
                     /translation="MAKTAARQSKKTKKRATPKPVAPESAPTRSAKAPRTASGKRVNP
                     QLLKQASKTAVEGTRERTEAGHMMAGRTPPSQVTPQRQSGATRKIDESIRDTPEYVSA
                     SSVTEDEKLLQAPRSAEEDYTKTDPWRVMRITAEFVEGMDALASVRRGISIFGSARTA
                     PDDPMYQAAEETGRLLAAAGFTVVTGAGPGIMEAANKGAKEGGGNSVGCNIELPFEQG
                     ANPYVDTLVNFRYFFVRKTMFVKYSNAFVIFPGGFGTLDEMFEAITLIQTGKIYQFPV
                     ILFGRAYWAGLVRWLQSKVLVERKISPTDLDLLIMTDDPREVVDTISQAYVAETRTVE
                     RRKIGPPHAAGK"
     gene            5201..>5463
                     /locus_tag="VLI40_02955"
     CDS             5201..>5463
                     /locus_tag="VLI40_02955"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HSU96157.1"
                     /translation="MSPSPSVIILLADGARPDVMGAALRSRELPAIARVAEEGGVHTI
                     ATAFPSVTGPAYAPFLTGQHPGSVGLPGLRWYDRAHSACRWPS"
BASE COUNT         1006 a         1663 c         1728 g         1066 t
ORIGIN      
        1 gattcgatga gagcacgaag taactcggca acagatggat tcccgctttc gcgggaatga
       61 cgactccctg cgccgctttc gcgggaatga cgactcttct ggacacggat tcccaaggcg
      121 cggataaatc cgcgccctac agcgggaatg acgatggaat cgcgagggat gacgatcccg
      181 aacgttcggt ccaactggac agccccactc tcgctggcga agttacaatc atgcttggcg
      241 acctcgttga aaggtggcgc gtgcaggcga tgcgcgcact gcagggttgg gccaccgaga
      301 agcggacgct gcgcggcctt ccggtaactc tggtcaacac gcgccctgat atcgactccg
      361 agctcgtatt ccgacgcctc gatacggcgc tcgcactcat ccagcaatac cggcccgcca
      421 ccttcgcgca gctgctgcag gacttctccc gcatacaggt cgtgcgttat ccatgcaggg
      481 ctgcgttcta tcccgattcg cgcacgtgcc tcgtcgagtt gacgttcagc gtgaatccgg
      541 agttcactga agcgcagatc gcctcgtcca tcgtgcatga aggaatgcac gcgcatgtgt
      601 tcgcgatggg ccaatccaat ccggccgagc ggccggatga agagcggctg tgcagacagg
      661 cagagctcga gttcgggctg gcgattccga atggcgaggc gatagtgcga cgcgcgaccg
      721 agtcgctgca gctcggcgac gaggatgtcg cgccggtcat cgactggcaa caggcccgac
      781 agacaatcgc cgaggtggat gcgcgcgcga cgtcgcgcgg cggagagcgt gatcgagagc
      841 gtgatcgaga gcgtgatcga gaaggcggaa gccagtcgtc tcgctcgtga ttcctccatt
      901 acattcgctg ctgctcttca tggcggccgg tctcgctctc aacctgacac cgggaccgga
      961 catgctctac gtcgcggcgc gcagtacgag cgaagggcgc gccgctggaa tcgtttcatc
     1021 gctcggcatc gcgacaggca cgttgtttca catcaccgcg gtcgcgcttg gcctggcagc
     1081 actgctcgct gcggtgccga tcgcatacac ggtagtgcgc attggcgggg cgatctatct
     1141 catgtacctc ggtgtgcgcg cgttcgcgag acgctcgccc gtcgcgacgc gagaagtcgc
     1201 gcgcgcatcg cttgcgacga tcttccggca gggtgcgatc accaacatcc tcaatccgaa
     1261 ggtcgcgctt ttctttctgg cattcctgcc gcagttcgtc gatcccgcgc gcggaagcgc
     1321 ggccgcgcag atcgtcgtgc tcggcctcat cttcgacacg tccggcacga tcgtcaacac
     1381 gatcgtcgcg cttggcgcga gtcgcgcggc ggagcgggtg cgcgcaagaa tgaatgtgag
     1441 agtgcgcgcc gacagcaaat ctgccgatgt gctgcacagg atcaccggcg tgatattcat
     1501 cgggctcgga cttcgcattg cgctggcaag caggcgttga gcgcaagctt gagggtcagc
     1561 aggatccgca tgttatcaac tcaaataatc tgatggccta ccagataagg cacgccggcc
     1621 gcgacgacgt cgcacagctg gcccggcttc gctacgactt tcgctccaat ctctcggcgc
     1681 ccatcgagga cgaatcggat tttatcgagc gttgccaagc atggatgacg acgcggctgg
     1741 gtgacggtcg ctggcattgc tgggtcgctg aggatggcga tcggcttatc ggaaacgtct
     1801 ggattcagct ggtcgaaaag attccgacac cgaccgacga gcccgaagag catgcatatc
     1861 tcacgaactt tttcgtgctg gaggcggctc gcgggcgcgg tatcggatct gatctgctgt
     1921 cccgcgttct ggagtggagt gcacgcaggc aggtacatgc ggtatttctc tggccgacaa
     1981 cgcgcacccg cgccatgtac gaaaggcacg ggtttctcgc ggacggcgat gccatgcagt
     2041 tgctgttcgt tccccgagcg cagtaaggcg agcgtaccgc gtcccggcga gcgcagaccc
     2101 gcgtggcggc gctcggaacc gtggaccaaa ggagaacgct caggcgaagc tatagattac
     2161 gacgtgtacg atttagcttc gcagtagtac tgctgtcatc ccacgtacct atcaaaccat
     2221 ccacctcccc atgagcccac agggtcgccg ccccaatctc agtgcgggac tacttctatt
     2281 ccgccgcggc gcggggtcaa ccgcgctcga attcttcctg gcgcacccgg gcggcccgtt
     2341 ctgggccaac cgggacgacg gcgcgtggac gatacccaag ggcggagtgg aagctggcga
     2401 ggcaattctg gatgcggcac ggcgggaatt tcaggaagag accggcatcg cccccgccgg
     2461 tccgttcatc gacctcggta gcatccggca acgtgcgggc aaggtcgtgc acgcgtgggc
     2521 tttcgagggc gatgcagacc cggccacgat cgtcagcaac agcatgacga ccgaatggcc
     2581 gcgcggctcg ggacgcatga tcacctttcc ggaagtggac cgctgcggct ggttcgacgc
     2641 ggaagcggcg cacgggcgga tcaacgcggc gcagggcgaa ctcctgactc gcctggaaca
     2701 gacgctcgct tcgggcgacg gcgcggggcg aaagtcgggc tagctggccg cgcgcagagc
     2761 agcataggcc agcacgaccc acgctgcgat gaatgccagg cctccgagcg gtgtgatggc
     2821 ccccagccag gtgactccgg ttaccgcaag cagatacagg ctgccggaga acagcacgac
     2881 accggcgagc atcaggaatc cggagaggcg aagcgcgccg ctgctgttga gctggctcgc
     2941 gagcgcggcg atcagcagca tgccaagcgc gtggtagaag tggtactgcg acgcggtgtg
     3001 atacacggac aacatctccg gcgacaacct cgccttgagg gcgtgtgcac cgaatgcgcc
     3061 gagtattacc gcgagcgcgg cgttgatgct gccgagtgcg atgaacgtgc gcgcgacggg
     3121 ttgcactgcc tactggccca tgatcatcgc gaacatcaac ggtgcaacga tcgatgcgtc
     3181 gctctcgatg atgtacctcg gtgtatcgat gccaagtttg ccccaggtga tcttctcatt
     3241 cggcacagcg ccggagtacg atccgtagct cgtggtcgag tcgctgatct ggcagaagta
     3301 accccacaac gggacttccg gacgctgcag gtcctgatgc agcatgggaa ctacacagat
     3361 cgggaagtca cccgcgatac cgccgccgat ctggaagaat ccgagagacg tggatctggt
     3421 cagcttcgta taatagtccg cgagctcgat catgtactcg atgcccgtgc gaaccgtatg
     3481 cacgttcttc acgtcgccgg ttatcacgtg gcctgaatac atgttgccga gtgtggagtc
     3541 ttcccatccg gggacgaaca tcggaaggtt cttctccatg gcagcgagca tccacgagtt
     3601 cttcggatcg atctgatatt cgttcttcag ctttccgccg cggagaatcc tgtacatgaa
     3661 ctcatgcggg aacaagcgct ccttcttctg atctgccgcg acccattctt cgagaacgac
     3721 gctctcgatc cggcgcatcg cttccatctc ggggatgcac gtatcggtaa cgcgattcat
     3781 gtggcgctcg agcagcgcct gctcgtcgga cggcgtaaga tcacggtaat gcggaacacg
     3841 ctcgtagtaa tcgtgcgcaa cgagattgaa gatgtcctct tccagattgg ctccagtgca
     3901 gctgatcgcg tgtaccttgt cctgacggat catgtccgca agcgaccgtc cgatctcggc
     3961 ggtgctcatc gcgccggcga gcgtgacgag catcctgcca ccgttatcga gatgcttgct
     4021 gtacgcatct gcggcgtcga ttacggtcgc ggcattgaag tggcggaagt gctcgcgaat
     4081 gaacgcagtg atcggtgcct tggaggaatt atctgtcatc gtagtcacgt tggaattgat
     4141 tgcgaaattt acttacccgc agcgtgaggc ggcccgatct tgcgacgctc gacggtgcgc
     4201 gtctcggcga cgtaggcctg agatatcgtg tcgacaactt cacgcggatc gtcggtcatt
     4261 atcagcaggt ccagatcggt gggcgagatc tttcgctcga ccagcacttt cgactgaagc
     4321 cagcgcacga ggcctgccca gtacgcacgg ccgaagagaa tgaccggaaa ctgatagatc
     4381 ttgccagtct ggatcagcgt gatcgcctcg aacatttcat cgagcgtgcc gaatccgccg
     4441 ggaaagatga cgaatgcatt cgagtacttc acgaacatcg tcttgcgcac gaagaaatag
     4501 cggaagttca ccagcgtatc gacgtacggg ttcgcgccct gctcgaatgg gagctcgatg
     4561 ttgcagccga ccgagttgcc gccgccttcc ttggcgccct tgttcgccgc ttccattatg
     4621 ccagggccgg ctccggtgac caccgtgaat ccggcggcgg cgagcaatcg gcccgtctcc
     4681 tccgcggcct ggtacatcgg atcgtcgggc gcggtgcgcg cggagccgaa tatcgaaatc
     4741 ccgcgccgga cgctcgcgag ggcatccatt ccctcgacaa actccgcggt gattctcatc
     4801 acgcgccagg ggtcggtctt ggtataatct tcctcggccg agcgtggcgc ctggagcagc
     4861 ttctcgtctt cggtcacgct ggaggcggag acgtactccg gcgtgtcgcg gatcgactcg
     4921 tcgatcttgc gcgtggcgcc ggattgacgc tgcggagtca cctgggatgg aggggttcgg
     4981 ccagccatca tgtggccggc ctccgtgcgc tccctggtcc cttctacagc ggtcttgctc
     5041 gcctgcttga gcagttgcgg attgaccctt ttaccggaag cggttctcgg cgccttggcg
     5101 gacctggtgg gagcggactc cggcgctacg ggtttcggtg tggcgcgctt cttggtcttc
     5161 ttagattgtc tggctgcggt ttttgccata accgaatcta gtgtcccctt cgccctccgt
     5221 aataatcctg ctggccgacg gcgcacgtcc ggatgtaatg ggcgccgcac tgcgatcgcg
     5281 cgagcttcca gcgattgcgc gcgtcgccga agagggcggc gttcatacca tcgcgaccgc
     5341 atttccgtcg gtgacggggc cggcgtacgc gccgttcctt acgggtcagc atcccggctc
     5401 ggtgggcctg ccaggcctcc gatggtacga tcgcgcgcac tcggcgtgca gatggccgag
     5461 cta
//
LOCUS       DATIMD010000130         1872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3515728, whole genome shotgun sequence.
ACCESSION   DATIMD010000130 DATIMD010000000
VERSION     DATIMD010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3515728"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..>1872
                     /locus_tag="VLI40_02960"
     CDS             125..>1872
                     /locus_tag="VLI40_02960"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HSU96158.1"
                     /translation="MITDTNAVPPFSDTALITWGPEPEGTVHTLPPHEYDLQHQSLRV
                     RFDWARHAVVGSTTLRIAALDHPITDVPLNAVGMTIRRVAAGSQPIKFDYDDSMLTVH
                     LRRPLAAHAQTSFTIDYEALKPRKGAYFIDRNHYMWTQGEAQDNRYWIPTYDHPDDKT
                     TWEISVITDPGESALSNGKLVSKRAVKGGTLWNWSQERPASTYLMSVVTGRYTVVRDH
                     WRDVPVEYWTYPDSVEAAKRGFGRTPDAIDVFSRKTGIPYPWAKYAQSVVPDFIFGGM
                     ENVSATTQNDDGILHPAWAEPQFNADGLMSHELGHQWFGDLLTTREWSHAWLNEGFAT
                     FMEQTYREASRGTDEGMWDRMDAEQQTIDADRRNRRPIVYNRYVKDPLEIFFSGHIYP
                     KGATVLQMLRHQLGDSVFWAAMHHYAQSHMYQNVVTDDLKRAFEESTGRDYKTFFDQW
                     VYGAGFPVFRVSSSYDSSARRLSLHADEIQQRDSLTGYFDADVDVEVLTDAAPVRGTM
                     SVRNGKGDLSLALPFPPRAIEWNRGSWILALTDFPRSTAMLDYQLAHGGDVAARDEAI
                     TLLSLRKGDGAAARTLA"
BASE COUNT          372 a          581 c          584 g          335 t
ORIGIN      
        1 tctctgcgcg actgcgttcg gctgcgccgg ccacccggcg cccacaccat caccgtcgcc
       61 cgcgccagcg acgcctgccg aagttcctca accaaccccg ccgcgaatca ttccgaacgt
      121 ccggttgatt accgacacca acgccgttcc gccgttctcc gataccgcgt tgataacgtg
      181 gggtccggag cccgaaggaa cggtgcacac gcttccgccg cacgagtacg atctgcagca
      241 ccaatcactg cgcgtgagat tcgactgggc gcgccatgcg gttgtcggct ccacgacact
      301 gcgcattgcg gcgctcgatc atcccatcac cgatgtgccg ctcaacgccg tcggcatgac
      361 gattcgccga gtcgcggcgg gatcccagcc gatcaaattt gattacgacg attcgatgct
      421 gacggttcac ctgcgccgtc cgcttgcggc gcacgcacaa acgtccttca cgatcgacta
      481 cgaagctctc aagccaagga agggcgcgta tttcatcgac agaaatcact acatgtggac
      541 gcagggcgag gcgcaggaca accgctactg gattccgacg tacgaccatc ctgacgacaa
      601 gacgacgtgg gagatctccg tcattacgga tccgggtgag agcgccctgt caaatggcaa
      661 gctggtcagc aagcgggcag tgaagggtgg cacgctatgg aactggtctc aggagcggcc
      721 cgcatccacg tatctgatga gcgtcgtgac gggcaggtac acagtcgtgc gcgatcactg
      781 gcgtgacgta ccagtcgaat actggaccta tccggattcg gtcgaggccg cgaagcgcgg
      841 attcggcaga actccggatg cgatcgacgt gttctcgcgc aagacgggaa ttccgtatcc
      901 gtgggccaag tacgcgcaga gcgtggttcc cgatttcatc ttcggcggca tggagaacgt
      961 gagcgcaacc acgcagaacg acgacggaat tctgcatccc gcgtgggcgg agccgcagtt
     1021 caacgccgac gggttgatgt cgcacgagct gggacatcag tggttcggcg acctgctcac
     1081 cacgcgcgaa tggtcgcatg cctggctcaa cgaaggcttc gcgaccttca tggagcagac
     1141 gtaccgcgag gcgtctcgcg gcaccgacga agggatgtgg gacaggatgg acgccgagca
     1201 gcagacgatc gacgcggatc gccggaaccg ccggcccatc gtgtacaacc ggtatgtgaa
     1261 ggatccgctc gagatcttct tcagtggcca catctatccc aagggcgcga cggtactgca
     1321 gatgttgcgg catcagcttg gcgactccgt gttctgggcg gcgatgcacc attacgccca
     1381 gtcgcacatg tatcagaacg tcgtgacgga cgatctgaaa cgtgcattcg aggaaagcac
     1441 cggccgcgat tacaagacgt tcttcgacca gtgggtgtac ggcgcgggat tccccgtgtt
     1501 cagagtgtca tcgtcatacg acagctcggc caggcggctg tcgctgcatg cggacgagat
     1561 ccagcagcgc gattcgctga ccggctattt cgatgccgac gtggacgttg aagtgctcac
     1621 cgacgcggca ccggtgcggg gcacgatgtc tgtgcgaaac ggaaagggcg atctctcgct
     1681 ggcacttccg ttcccgccgc gcgcgatcga gtggaacagg ggctcgtgga ttctggcgct
     1741 gaccgatttc ccgcgatcca ccgccatgct cgactatcag cttgcgcacg gaggcgacgt
     1801 cgcggcgcga gacgaggcga ttacgttgct ctctctgcga aagggtgatg gagcggccgc
     1861 tcgcactctc gc
//
LOCUS       DATIMD010000131         6261 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_630062, whole genome shotgun sequence.
ACCESSION   DATIMD010000131 DATIMD010000000
VERSION     DATIMD010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6261
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_630062"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..1200)
                     /locus_tag="VLI40_02965"
     CDS             complement(64..1200)
                     /locus_tag="VLI40_02965"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HSU96159.1"
                     /translation="MRRSTIPLHGGSSHLPPGSPVVTPITQSVSFIQELGTAEGLKYG
                     RYGNTPNVELVERRLAMLDGGEAAVALSSGMGATGCAMLALLRPGDHLLSSSWIYGGT
                     HKLFTQELAGMGIEVTLIDPLSPRMWRKALRQTTRAIFVESPVNPTCRVLDLSSLANL
                     AKAEGVALAVDSTFASPVNFRPLEHGADIVIHSTTKYLNGHHDVLGGAVIGTASYVEE
                     VRRKMIVWGQSPDPFSVWLLERGMKTLDVRVRRQNDNAMKLAQWCETRPEFAQVLYPG
                     LESHPDHEIAQQCLDGFGGMMALVLAGGGDAATRFLEKLEIVMHAPSLGGVDTLVSEP
                     RYTSHAAMTPEGRAEIGIPDGFLRFSVGLEDAGDLIADFEQALR"
     gene            complement(1203..1526)
                     /locus_tag="VLI40_02970"
     CDS             complement(1203..1526)
                     /locus_tag="VLI40_02970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96160.1"
                     /translation="MKFFGSRPKLDIKGFQPELRVIDYVATRKGDAERGPQVRLSGVD
                     ARFRLLSDGELAWVRGERGQQLAEVLIDDSFPQHTCGLRDIPGVLPSESVVVAKPDLD
                     TPDRT"
     gene            complement(1526..1891)
                     /locus_tag="VLI40_02975"
     CDS             complement(1526..1891)
                     /locus_tag="VLI40_02975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96161.1"
                     /translation="MMKNHIDVSSVLRHAVSESYSNLVTRPTGVAVRVYIEAQIQAAR
                     DCEVTVIDFSQVGMMDFSCADEIVAKLVMQHEKGTPTFVFTGLSESHIEAIDVVLERH
                     GMSLVSHEADSNSYIAVTH"
     gene            complement(1888..2772)
                     /locus_tag="VLI40_02980"
     CDS             complement(1888..2772)
                     /locus_tag="VLI40_02980"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU96162.1"
                     /translation="MTNVITVPPSLDDATFEQILEPLSRLQRDDRVLIDARHARWASP
                     YGLTALLTLAQTRLERPSLAVPEADDVALYWARAGFFRYAADLYDIVGSVPRGRQSEP
                     AVLLEVTPVNASEDVHTVVDKVQQRAQSILVNELKLDATATMRFTMALSETCQNIVEH
                     AEHGGWVAVNSYRWQKRLGGRRVLVIAVCDAGRGFRASLESAPARPRSDRWDDGMALE
                     EAVMRGVSRFRDTGRGQGLAGVRRFIGRWDGKFSVRSGTARLAIVPTWDDDVPLQENL
                     PAFPGSQIQITIPERVDR"
     gene            complement(2769..3755)
                     /locus_tag="VLI40_02985"
     CDS             complement(2769..3755)
                     /locus_tag="VLI40_02985"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HSU96163.1"
                     /translation="MCARRRLGVIGTFVWDEIHGRDPSQAPVEEWGGITYALAGLDAA
                     LDKEWEIVPLIKVGSDLAQRARDYLATLRHLAPDAAVIEVPYPNNRVTLRYESSERRT
                     EQLAGGIPGWHWLGLKPLLAGLDALYINLISGWELSLETAQLIRQYFDGVVYCDMHSL
                     LLAVDPEGFRVPHLVPNIASWLQCFDVLQVNEDELALLAPDAMALAATAMAAGVSVIN
                     VTLGPRGVVYFAAPKFEQLSDLKRTKLPASAALAGAIRTARVPAVSPILTGTGDPTGC
                     GDVWGATHFARLLAGDKLGDAIDAAMLAASRNLTHRGATSLASYLRGELSPT"
     gene            complement(3755..4747)
                     /locus_tag="VLI40_02990"
     CDS             complement(3755..4747)
                     /locus_tag="VLI40_02990"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HSU96164.1"
                     /translation="MNREQYIIGVDLGGTNLSVGAMPLDGSREIGLRTLPTRADLGAD
                     AVSDRIAAMIESVVVDLNKETGAGRDDILGVGIGSPGPLDRERGVVIFTPNLGWRDYP
                     LRDEIANRVNMRATLDNDANCATFGEFWRGAARGGRDVIGMTLGTGIGGGLVLDGRLY
                     HGVSDAAGEIGHTSIESNGRRCKCGNYGCLEAYCSGPAIAERAREALESDPSPTIDAL
                     VDGDMSRLTAHIVYEAARRGDTVAREVVRDTARFLGTGLSNLINIFNPDTVVLAGGVT
                     QAGEALMLPLQAEVKRRAFKTAVDSCKIVLGSLPMSAGVVGAVATFKERVLGSL"
     gene            complement(4744..5760)
                     /locus_tag="VLI40_02995"
     CDS             complement(4744..5760)
                     /locus_tag="VLI40_02995"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HSU96165.1"
                     /translation="MRSLVVQTSFIGDVVLTTPLLARLAQDGAVDVVTTPLGATLLAS
                     HPALSRLFVYDKRKADSGMAGFLRMARRARGSHRAFLCQGSTRSGALAFAAGCTERIG
                     FTTSDGRWTYTERVEYRDDWHHARRLLSLGDLQLAASSDDPAAAAIRPRLYPTDDDIR
                     AVDELLEHRNRPMIALAPGSAWHTKQWPRYGELAALVADRYDIAIVGGRGDLGAAGEI
                     KLRVDREHIIDGAGKLSLLGSAELIRRALVLVTNDSSPQHLASAMGTPTVTIFGPTVP
                     EFGFGPLAPGSRTVGNTSLACRPCDRHGPRECPLGHWRCMNEITPDEVADVVQSVISE
                     ETVR"
     gene            complement(5764..>6261)
                     /locus_tag="VLI40_03000"
     CDS             complement(5764..>6261)
                     /locus_tag="VLI40_03000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683641.1"
                     /note="back-translocating Elongation Factor EF4; binds to
                     the ribosome on the universally-conserved alpha-sarcin
                     loop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HSU96166.1"
                     /translation="MSYIDAARVEFDFEFPLAEIILDFFDRLKTISRGYASLDYEMLE
                     YRESDLVKLDMLINGEPVDAFSVIIHREKAYEWGRKIADKLKDLIPRQLFEVAIQAAL
                     GGKIIARTSVKALRKDVLAKCYGGDISRKRKLLEKQKEGKKRMKQVGSVEIPQEAFLA
                     VLQVD"
BASE COUNT         1159 a         2073 c         1874 g         1155 t
ORIGIN      
        1 gccacgccgc cgcgggtgta ctccttcgcg acgttgagaa accttaccag actcaacctt
       61 cagctacctc aatgcctgct cgaagtccgc aatcaggtcg cccgcatcct cgagtcctac
      121 gctgaagcgc aggaagccat caggaatgcc gatctcggcg cggccttcgg gcgtcatcgc
      181 ggcatgggac gtgtaacgtg gctcgcttac cagcgtgtcc acaccgccaa ggcttggcgc
      241 gtgcatcacg atctcgagct tctcgagaaa acgtgtcgca gcatcgcccc cgcccgcgag
      301 taccagagcc atcatcccac cgaagccgtc gagacactgc tgcgcgatct catgatcggg
      361 atgagattcg aggccgggat acagcacctg cgcaaactcg ggacgtgttt cgcaccactg
      421 cgccagcttc atcgcattgt cgttctggcg ccggacacgg acgtcgagtg tcttcatgcc
      481 gcgctcgagc agccacacgg aaaacggatc gggtgactgt ccccacacga tcatctttct
      541 gcggacttct tcgacgtatg acgcagtgcc gatcacggcg ccgcccagta cgtcgtggtg
      601 accgttgaga tacttggtgg tggagtgaat gacgatgtcc gccccgtgtt ccagcggacg
      661 gaagttgacc gggcttgcaa aggtggagtc cactgcgagg gcgacgccct cggccttcgc
      721 gagattggcg agcgagctca ggtcgagcac gcggcaggtc gggttgaccg gagactcgac
      781 gaatatcgcg cgcgtggtct gtcgcaatgc cttgcgccac atccgcgggg agagcggatc
      841 gatcagcgtg acctcgatcc ccatccccgc gagctcctgc gtgaacagct tgtgcgtgcc
      901 accatagatc cacgagctgg agagcaggtg atcgcccggt cgcagcagcg cgagcatcgc
      961 gcaaccggtt gcccccattc cgctcgacag cgcaaccgct gcctcgccgc catcgagcat
     1021 tgcgagcctg cgctccacca gctcaacgtt cggcgtgttg ccgtatcgtc cgtacttgag
     1081 accctcggcg gtaccgagct cctgaatgaa gctcaccgat tgcgtgatcg gcgttaccac
     1141 cggcgagccc ggtggcaggt gcgacgagcc gccgtgtagc ggaatggttg atcgtctcat
     1201 tcttacgttc tgtctggagt atccaggtcc ggcttcgcca ctaccacgga ctcggaagga
     1261 agcacaccgg ggatatcccg cagcccgcat gtgtgttgtg gaaatgaatc gtcgatcagc
     1321 acttctgcca gctgctgtcc gcgctcgcca cgaacccagg cgagctcgcc gtccgacaga
     1381 aggcgaaacc gtgcatccac acctgacagt ctaacctgtg gaccgcgctc ggcgtcgccc
     1441 ttcctcgtag ccacgtaatc gatcacgcgc agctcaggct ggaaaccctt gatgtccagt
     1501 tttggacgcg agccaaagaa cttcatcagt gtgtgacagc tatatacgag ttggagtcgg
     1561 cttcatgaga caccagcgac atgccatggc gctcgagcac cacatctatc gcttcgatgt
     1621 gcgactcgct gagcccagtg aagacaaacg tcggtgttcc tttttcgtgc tgcatgacaa
     1681 gcttggcaac tatctcgtcg gcacacgaga aatccatcat cccgacctgc gagaagtcga
     1741 tcacagtaac ctcgcagtcg cgggccgcct gtatctgcgc ttctatatac acacgaacgg
     1801 ccactccggt cgggcgcgtg acaagattcg agtagctctc ggaaactgca tgccgcagca
     1861 cgctgctcac gtcgatgtgg ttcttcatca tcggtcaacg cgctctggaa ttgtgatctg
     1921 aatctgggaa cccggaaatg cggggaggtt ttcctgtagc ggtacgtcgt cgtcccacgt
     1981 cgggacgatt gccagccgcg cagtgccgct gcgcaccgag aacttgccgt cccaccgtcc
     2041 tatgaatctc cggacgcccg cgaggccctg gccgcgtccc gtgtcacgga accggctcac
     2101 gccacgcatc accgcctctt cgagcgccat tccatcgtcc cagcgatcgg atctcggacg
     2161 agccggcgcc gattcgagcg acgccctgaa tccgcgaccg gcgtcgcaga ccgcaattac
     2221 cagcacacgc cgtcctccaa gccgcttctg ccagcgatag ctgttcaccg cgacccagcc
     2281 gccatgctcg gcgtgctcca cgatgttctg gcaggtctcc gacagcgcca tcgtgaatcg
     2341 catcgtcgca gttgcatcca gcttcagctc gttgaccaga atcgactgag cccgctgctg
     2401 caccttgtcg acgaccgtat ggacgtcctc gctcgcgttc accggcgtca cctcgagcag
     2461 caccgccggc tcgctctggc ggccgcgcgg cacggatccg actatgtcgt aaagatccgc
     2521 ggcataacga aagaatccgg cgcgcgccca gtacagcgcg acgtcgtcag cctccggtac
     2581 cgcaagactt ggacgctcca gtcgcgtctg cgcgagcgtg aggagagcag tgaggccgta
     2641 gggtgacgcc cagcgtgcgt ggcgggcgtc gatgagaacc cggtcatcgc gctggagtcg
     2701 cgacagcggc tccaggatct gctcgaacgt ggcgtcatcc agcgatggtg gaacagtgat
     2761 gacgttcgtc acgttggcga gagttctccg cgcaggtagc tcgcgaggct cgttgccccg
     2821 cggtgggtaa gattgcgtga cgccgcaagc atcgcggcgt cgatcgcgtc gcctaactta
     2881 tcacctgcaa gcagtcgtgc gaaatgggtc gcgccccaga cgtcgccaca tccggttgga
     2941 tcacctgttc cagtcaggat tggcgatacc gctggcaccc tcgcagtccg tatggcgcct
     3001 gccagcgctg ccgatgcagg cagtttcgtt cgtttgaggt cggacagttg ttcgaatttc
     3061 ggcgcggcga agtagacaac ccctcgcggg cccaatgtca catttatgac cgagaccccg
     3121 gccgccatcg ctgtcgccgc cagcgccatc gcgtccggcg ccagcagcgc gagctcgtcc
     3181 tcgttcacct gaagcacgtc gaagcactgc agccagctgg caatgttcgg aacgagatgc
     3241 ggcacgcgaa atccctccgg gtccaccgcc agcagcaggg aatgcatgtc acagtagacg
     3301 acgccgtcga aatactgccg gatgagctgc gcggtctcga gcgacagctc ccacccgctg
     3361 atgagattga tgtacagcgc atccagtccg gcgagcagcg gcttgaggcc gagccagtgc
     3421 cagcccggaa tgccacccgc aagctgttcg gtgcgccgct cgctgctctc gtaccgcagc
     3481 gtcacgcggt tgttgggata cggcacctcg atcaccgcag cgtccggcgc cagatggcgc
     3541 agtgtcgcga gataatcgcg cgcgcgttgc gccagatcgc ttccgacctt gatgagcgga
     3601 acgatctccc actctttatc gagcgcggca tcgagtcccg cgagcgcgta cgtaataccg
     3661 ccccactcct cgacaggcgc ctgtgacgga tcccgtccgt gtatctcgtc ccacacgaat
     3721 gtgccgatga cgccgagccg gcgccgtgcg cacatcagag cgagcccagc actcgttcct
     3781 tgaatgtcgc gaccgcgccg acgacaccgg ccgacatggg aagcgagccc agcacgatct
     3841 tgcaggaatc cacggcggtc ttgaatgcgc ggcgcttcac ctcggcctgc aacggcagca
     3901 tcagcgcctc gccagcctgc gtcacgccgc cagcgagcac caccgtgtcg ggattgaaga
     3961 tgttgatgag gttggacaat ccggttccaa gaaagcgagc cgtgtcgcgc acgacttcgc
     4021 gcgcgacggt atcgccgcgc cgcgccgctt cgtacacgat gtgcgctgtg agtcgcgaca
     4081 tgtcgccgtc cacgagcgcg tcgatcgtcg gactcggatc actctccagc gcctcgcgtg
     4141 cgcgctccgc gattgcggga ccggagcagt acgcttccag gcacccgtag ttaccgcact
     4201 tgcagcgtcg tccattcgac tcgatggacg tgtggccgat ctcgccggcg gcgtcggaca
     4261 cgccgtgata caatcttcca tcgagtacga gcccgccacc gattccggtg ccgagcgtca
     4321 tgccgatcac atcgcgtcca ccgcgtgcag cgccgcgcca gaactcaccg aacgtcgcgc
     4381 agttggcgtc gttgtcgagt gtcgcgcgca tgttgacgcg gttggcgatc tcatcgcgca
     4441 gcggatagtc gcgccacccg agattgggcg tgaatatcac cacgccgcgc tcgcgatcga
     4501 gcgggcctgg tgatccgatt ccgacgccga gtatgtcatc gcggccggca ccggtctcct
     4561 tgttgagatc gacgacgacg ctctcgatca tcgccgcgat ccgatcggac accgcatcgg
     4621 caccgaggtc cgcgcgcgtc ggaagcgtac gcaatccgat ctcgcggctt ccgtcgagtg
     4681 gcatcgcacc cactgacaga ttggtcccgc caagatcgac accaatgatg tattgctcgc
     4741 gattcatcga acggtctcct cggaaatgac ggattgcacg acgtcggcca cctcgtcagg
     4801 ggtaatttcg ttcatgcagc gccagtggcc tagtgggcac tcgcgcggac cgtgccggtc
     4861 gcacggccgg caggcaagtg acgtgttacc aacggtacgc gagcccggcg ccagcggccc
     4921 gaaaccgaac tccggaaccg tggggccgaa tatcgtcacg gtcggcgtgc ccatcgccga
     4981 cgcgagatgc tgcggcgacg aatcgttggt cacaagcacc agcgcgcgcc tgatcagctc
     5041 ggccgatccc aacaacgaca atttaccagc cccgtcgatg atgtgctcgc gatccacacg
     5101 cagctttatc tcaccagctg caccgagatc gccgcgaccg cccactatcg caatgtcgta
     5161 tcgatcggcg acgagcgcag caagctcgcc atatcgcggc cactgtttgg tgtgccacgc
     5221 gctgccgggc gcaagtgcaa tcatgggacg gttgcgatgc tcgagcaatt cgtcgaccgc
     5281 gcgaatgtcg tcgtccgtcg ggtagagtcg cggcctgatc gccgccgcgg caggatcgtc
     5341 ggatgatgct gcaagctgaa ggtctccgag cgagagcagg cggcgcgcgt gatgccagtc
     5401 gtcgcgatac tccacgcgct cggtataagt ccagcgtccg tcagacgtcg tgaatccgat
     5461 tcgctccgtg catccggcgg cgaatgcgag cgcaccgctc cgcgtcgagc cctgacagag
     5521 aaatgcgcga tgcgatccgc gcgcgcgtcg cgccattctc aggaagccag ccataccgct
     5581 gtcggccttg cgcttgtcat agacgaacag acgcgacagt gcaggatgtg atgcaagcag
     5641 tgtcgcaccc aatggcgtgg tgacgacatc cactgcgccg tcctgcgcca gtcgcgccag
     5701 gagcggcgtc gtcaacacga cgtcgccgat gaagctcgtc tgaacaacga gcgaccgcaa
     5761 cggtcagtct acctgcagaa ctgcgaggaa cgcctcctgc gggatctcga ccgagccgac
     5821 ctgcttcatg cgcttctttc cttccttctg cttctcgagc agcttgcgct tgcgcgagat
     5881 gtcgccgccg tagcacttgg cgagcacgtc cttgcgcagt gccttgacgc tcgtgcgcgc
     5941 gatgatcttg ccgccgagtg ccgcctggat tgcaacctcg aagagctggc ggggaatgag
     6001 atccttgagc ttgtcggcga tcttgcgtcc ccattcgtac gccttctcgc gatggatgat
     6061 cacggagaac gcatccaccg gttcgccgtt gatcagcatg tcgagcttga ccaggtcgct
     6121 ctctcggtac tcgagcatct cgtagtcgag cgatgcgtat cctcgactga tcgtcttgag
     6181 ccggtcaaag aaatccagaa ttatctcggc cagcggaaac tcgaagtcga actcgacacg
     6241 cgcggcatcg atgtaggaca t
//
LOCUS       DATIMD010000132         1778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4381055, whole genome shotgun sequence.
ACCESSION   DATIMD010000132 DATIMD010000000
VERSION     DATIMD010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4381055"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..282)
                     /locus_tag="VLI40_03005"
     CDS             complement(<1..282)
                     /locus_tag="VLI40_03005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96167.1"
                     /translation="MMQIASHSGMRVPGRLIALTAFTGALALSACTTAPHPIAEFATP
                     TGSPHAVSSRASRAIDWPSYGYDPAGTRFSPASQITPANAHSLTLAWTYR"
     gene            complement(498..>1778)
                     /locus_tag="VLI40_03010"
     CDS             complement(498..>1778)
                     /locus_tag="VLI40_03010"
                     /inference="COORDINATES: protein motif:HMM:NF026199.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidC/Oxa1 family insertase periplasmic-domain
                     containing protein"
                     /protein_id="HSU96168.1"
                     /translation="RSGDVVTYSANVGGSTVMINYAIVPDSFVSHVTGSVSGAKAGSY
                     LVVTLPQTFAATEPDTNDDRNSLAFAFLTKREAARNVSFHSLDPGERQLVEGPVTWIV
                     AKSKYFVVGLLAPKKGPEFTEAALVGGPRTTKVATRATGTVVIPIANGAFAFDMYAGP
                     QEWKKLNALGRDFDQVNPYGWAFVRPLMQPIATSVIRLVLWMHSALNLSYGLVLIALG
                     LLIRLLMWPLYQTSMKTSIKMQILQPELTAVQDKFKDDPEKQRAEIMKVYQSHGMNPL
                     SPLLGCLPSLLPMPILLALFFVFRNTIEFRGVPFWWMSDLSVRDPYYILPLLMGASMY
                     LISWMGMRNTPPNPQAKMMSYIMPAMFTLFLYREAAGLNLYYATQNLATLPQQWHLSR
                     TRGMSKPKTVTAAKEVKEVAVKPTPAKGKAKSKG"
BASE COUNT          352 a          551 c          536 g          339 t
ORIGIN      
        1 gcggtaggtc cacgcaagcg tgagtgaatg cgcgttcgca ggcgtgatct gcgaagctgg
       61 ggagaatcgc gtaccggccg ggtcgtagcc gtaggagggc cagtcgatcg cgcgggatgc
      121 gcgggagctt acggcgtgcg gagatccggt cggtgtggcg aactctgcga ttggatgcgg
      181 cgcggttgtg cacgcggata gagccagtgc accggtgaag gccgtcaacg caatcaaccg
      241 gcctggcaca cgcattccgg aatgagatgc aatctgcatc atgagtggtg tctggttgga
      301 gtttccttgc gctcatcgag cgcccggtgc gggtaaactc gcggggacgc aattcgccgg
      361 caacgaaatt gggacagaag ggactggcag gggaggacgg ggactcgggc gaccccagtc
      421 gccatcctcg ccgcctcgtc gcaggagtaa gtgatgccag gcgaaggtgg ggcagggatg
      481 catccctgcc tgtcacatca ccccttgctc ttcgccttcc ccttggccgg cgtcggcttc
      541 actgcaactt ccttaacttc ctttgccgcc gtaaccgtct tcggcttgct cattccgcgc
      601 gtgcgcgaca gatgccactg ctgtggcagc gtcgcaaggt tctgcgtcgc gtaatacagg
      661 ttgagtccag ccgcttccct gtagagaaag agcgtgaaca tcgccggcat tatgtagctc
      721 atcatcttcg cctgcggatt cggcggcgtg ttgcgcattc ccatccacga gatgagatac
      781 atcgacgcgc ccatcagcaa cggcaggatg tagtacggat cacgtaccga cagatcgctc
      841 atccaccaga acggaacgcc gcggaattcg atcgtgttcc tgaacacgaa gaacagcgcg
      901 agcagaatcg gcatcggcaa gagcgaggga agacatccga gcaacggcga tagtggattc
      961 atcccgtggc tctggtacac cttcatgatc tccgcccgct gcttctccgg atcgtccttg
     1021 aacttgtcct gcaccgccgt cagctcaggc tgcagaatct gcatcttgat cgacgtcttc
     1081 atcgacgtct gatacagtgg ccacatcagc agacggatga gaagcccgag cgcgatgaga
     1141 accagcccat agctcaggtt gagcgcgctg tgcatccaca gcaccagccg gatcaccgac
     1201 gtcgcgatcg gttgcatcaa cggccgcacg aacgcccagc cgtacggatt cacctgatca
     1261 aagtctcggc cgagtgcgtt gagcttcttc cactcctgcg ggcccgcata catgtcgaac
     1321 gcgaatgcac cattcgctat cggtatcacc accgttcccg tagcgcgcgt cgcgaccttg
     1381 gtcgtgcgcg gaccaccgac gagcgccgcc tcggtgaact ccggcccctt ctttggcgcc
     1441 agcaacccga cgacgaaata cttcgacttg gccactatcc aggtcaccgg cccttccacg
     1501 agctgcctct cgcccggatc gagcgagtga aacgagacgt tccgcgcagc ttcgcgcttg
     1561 gtgaggaagg cgaacgccag cgaattgcgg tcgtcgttcg tgtccggctc cgtcgccgca
     1621 aaagtctgag gcagcgtaac aacgagatag ctgcccgcct ttgcgccact cacagagccc
     1681 gtgacgtgtg atacgaagct gtccggcacg atcgcataat tgatcatgac cgtcgagcca
     1741 cccacgttcg cggagtaggt gacgacgtca ccggatct
//
LOCUS       DATIMD010000133         2642 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3516333, whole genome shotgun sequence.
ACCESSION   DATIMD010000133 DATIMD010000000
VERSION     DATIMD010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3516333"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1188
                     /locus_tag="VLI40_03015"
     CDS             <1..1188
                     /locus_tag="VLI40_03015"
                     /inference="COORDINATES: protein motif:HMM:NF012926.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HSU96169.1"
                     /translation="ERLQQTIAFWDGWVATLKYEGTHRAVVERSALTLKLLCYEPTGA
                     IIAAPTTSLPEEIGGERNWDYRFIWLRDASFTLDALQGLGQHEEASAFMAFLRRIMRK
                     ATDSHLQIMYGVDGSRDLPERTLPHLSGYRNSAPVRVGNAAVNQLQLDVYGEILNTAY
                     RWSRSATVGEGTWWSLSRLVDWIAVHWVDPDSGIWEVRSTEEHYVMSKVMCWVALDRG
                     VKMAREFGLPCDISHWEAARDAVWAEVMDRGWSEKRQSFVQFYGTEALDAANLIIPMV
                     GFLPPDHERVKGTIAATLRDLTSDDKELVYRYRNDDGLPGSEGVFSICTFWMAQALIL
                     SGDPEQGERIFCRMLKHANHVGLYSEELDPKTGGFAGNFPQGLTHIALINCALALADV
                     GRG"
     gene            1387..>2642
                     /locus_tag="VLI40_03020"
     CDS             1387..>2642
                     /locus_tag="VLI40_03020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HSU96170.1"
                     /translation="MAPFEPAGDQPKAIAELSRGLERGDRFQTLLGVTGSGKTMSIAN
                     VIQAYGKPTLVLSHNKTLAAQLYGEIKSFFPHNAVEYFISYYDYYQPEAYVPTTDTYI
                     EKDASINEDIDRLRLRATSSLMERDDVIIVATVSAIYGLGDPVQYREQMVTLLKGQKI
                     ARDDILRSLVKIQYGRNDVAFERGTFRVRGDTVEILPAYEEQGVRIELWGDEIERISK
                     IDPLTGNVITALERAAIYPAKHFVTSRPTIERAVRRIQAELAERLQELRNTNKLLEAQ
                     RLESRTNFDIEMMLEIGTCAGIENYSRHLSGREIGERPACLFDYFPDDFLVVVDESHV
                     TLPQIGGMFNGDRARKLTLVDYGFRLPSALDNRPLTFDEFLSLTPRAINVSATPGDIE
                     LRLCEGVVVEQIIRPTGLVDPEIEVRP"
BASE COUNT          491 a          773 c          881 g          497 t
ORIGIN      
        1 gagcgattgc agcagaccat cgcgttctgg gatggatggg ttgcgacgct caagtatgag
       61 ggcactcacc gggctgtcgt cgagcggtcc gcgctcacgc tcaagctgct gtgctacgaa
      121 ccgaccggcg cgatcatagc cgcgccgacg acgtcgctcc cggaagagat cggcggtgag
      181 cgcaactggg attatcggtt catctggctg cgcgacgcgt cgttcacgct cgatgcactc
      241 caggggctcg gccagcacga agaggcgagc gccttcatgg ccttcctgag gcgtatcatg
      301 cgcaaggcca ccgactcgca cctgcagatc atgtacggcg tcgacgggtc gcgcgatctg
      361 ccggagcgca cgctgccgca tctctcgggg tatcgtaact ccgcgccagt gcgcgtcggc
      421 aacgctgccg tgaatcagtt gcagctggat gtgtacggcg agattctgaa caccgcgtac
      481 aggtggagtc gcagtgcgac cgttggtgaa ggcacgtggt ggtcgctcag ccgtctggtg
      541 gactggatcg ccgttcactg ggtcgatccc gacagcggca tctgggaagt gcgctcgacg
      601 gaagagcact acgtgatgag caaggtcatg tgctgggttg cactcgatcg cggcgtgaag
      661 atggcgcgcg agttcggcct gccgtgcgac atctcgcatt gggaagcggc gcgcgatgcc
      721 gtgtgggcgg aagtcatgga ccggggatgg agcgagaagc gccagagttt cgtgcagttc
      781 tacggaacgg aggcgctgga cgcggcgaat ctcatcatac cgatggtcgg ctttctcccg
      841 ccggatcacg agcgcgtcaa gggaacgatt gccgcgacgc tgcgcgacct cacgagcgat
      901 gacaaggagc tggtctaccg ctatcgtaac gacgacggtc tgccgggttc ggagggcgtc
      961 ttctcgatct gcaccttctg gatggcgcag gcactcatac tttcgggcga tcctgagcag
     1021 ggcgagcgga tcttctgccg catgctcaag cacgccaacc acgtgggact ctacagcgag
     1081 gagctggacc ccaaaactgg cgggtttgcc ggtaattttc cgcaaggatt gacgcacatc
     1141 gcgctcatca actgcgcgct ggctctggcg gatgtgggta gggggtgagc cgtgggtcgg
     1201 ggcgacgctg gtcggggcga cgctggtcgg ggcgacgctc gttggggcga cgctcgttgg
     1261 ggcgacgctc gttggggcga cgctcgttgg ggcgacgctc gttggggcga cgcatgcgtc
     1321 gcccttacag cccgtcctga ctcgatcttc ggttaaattt cggtattcat ggcaaagttc
     1381 gacttggtgg caccctttga gccggccgga gaccagccga aagcgatagc cgagctatcg
     1441 cgggggctcg agcgtggaga tcggttccag acgctgctcg gcgtcaccgg ctcgggaaag
     1501 acgatgtcca tcgcgaacgt cattcaggcg tatggcaagc cgacgctcgt gctgtcgcac
     1561 aacaagaccc tcgctgcgca gttgtatggc gagatcaagt ccttcttccc gcataacgcg
     1621 gtcgagtact tcatctcgta ctacgactac taccagccgg aagcgtacgt acccacgacc
     1681 gatacgtata tcgagaagga cgcatcgata aacgaagaca tcgaccgtct gcggttgcgc
     1741 gcgacgtcaa gcctgatgga gcgcgacgac gtgataatcg tcgccacggt ctcggcgatt
     1801 tacggacttg gcgatcctgt gcagtatcgc gagcagatgg tgacgctgct gaagggtcag
     1861 aagatcgcgc gcgacgacat tctgcgctcg ctcgtcaaga ttcagtacgg ccgcaacgac
     1921 gttgcattcg agcgtggcac cttccgcgtc cgtggcgaca cggtcgagat tctgcccgcc
     1981 tacgaagagc agggtgtgcg catagagctg tggggtgacg agatcgagcg cattagcaag
     2041 atcgatccac tcacgggcaa cgtcatcacc gcgctggagc gtgcggcgat ttacccggcg
     2101 aagcacttcg tcacgagtcg cccgaccatc gagcgtgcgg tgcggcgcat tcaggccgag
     2161 ctggcggagc gtttgcagga gctgcgcaac acgaacaaac tgctcgaggc acagcggctc
     2221 gaatcgcgga ccaacttcga catagagatg atgctcgaga tcggcacgtg cgccggtatc
     2281 gagaactatt cacggcatct gtcgggacgc gagatcggcg agcggcccgc ctgtctgttc
     2341 gactacttcc cggatgactt cctcgttgtg gtcgatgagt cgcacgttac tctgccgcag
     2401 atcggcggca tgttcaacgg cgatcgcgca cgcaagctca cgctcgtcga ttacggcttc
     2461 cggttgccga gtgcgctgga caacaggccg ctgacgttcg acgaattcct gtcgctcacg
     2521 ccgcgcgcga tcaacgtctc ggccacgccg ggcgacatcg agctgcgact gtgcgagggc
     2581 gtggtggtgg aacagatcat ccggccaacg ggcctcgtcg atcctgaaat cgaggtacgt
     2641 cc
//
LOCUS       DATIMD010000134         2217 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3804937, whole genome shotgun sequence.
ACCESSION   DATIMD010000134 DATIMD010000000
VERSION     DATIMD010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3804937"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..471
                     /locus_tag="VLI40_03025"
     CDS             <1..471
                     /locus_tag="VLI40_03025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004512 - inositol-3-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006021 - inositol biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HSU96171.1"
                     /translation="EVLDDPQSFKTKEESKLSVLHTILQPEKYPDLYKDFSHVVRINY
                     YPPRGDNKEGWDNIDIFGWMNYPMQIKINFLCRDSILAAPLVLDVALFSDFAQRAGMK
                     GIQEWLSFFYKSPMTAPGLQPEHDLFIQQTKMKNTLRHLMGEDQITHLGLEYYA"
     gene            471..929
                     /locus_tag="VLI40_03030"
     CDS             471..929
                     /locus_tag="VLI40_03030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96172.1"
                     /translation="MKKATLMWTSLLAAASVSLASCGGNNNRAAEIRQWTDDMAFRIS
                     VVPAPPIAEEMTVFKVVVSDKESGQPIQLGQGRIFATSQEHAQTGDGLAKGPEVGTYY
                     AHVRFPVSGDWAVGLQFRRDSTSKLERTQDWQQQVLPAPPLGQSTDTTKR"
     gene            932..1225
                     /locus_tag="VLI40_03035"
     CDS             932..1225
                     /locus_tag="VLI40_03035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96173.1"
                     /translation="MRHFFRSHLKPDQVLAIADTFFPTIQENRTASAARTRDFSGPLG
                     ALKLSVNMEGGHYTFVQIDTDQTGESRLDRNAKKFFVELHRAEDPAYKLTASY"
     gene            1234..>2217
                     /locus_tag="VLI40_03040"
     CDS             1234..>2217
                     /locus_tag="VLI40_03040"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HSU96174.1"
                     /translation="MTLTREQKLELYYYMRLTRSLEERLVNLYRQTKVIGGLFRSLGQ
                     EADAVGAAYALDKSKGDILSPLIRNLGAMLVRGAEPTEVIKQYMAKGDSPTKGKELNI
                     HFGGIERGFVGQISHLGDMVPVMAGVTLAAKMRGEDRVGLVFVGDGATSTGAFHEGIN
                     FAAVQRCPLVVIVENNGYAYSTPVSRQTAAKSFVDKAVGYGIPGEQADGNDVLAVYDV
                     TRRAVDRARRGEGVTLIELITYRRKGHAEHDNQSYVPEGEIDRWAAENDPIDRFVKVL
                     RAEKVKASELTAIDDRIKAEIDAATDVADASPMPEPVEALRGVYAGQANVPP"
BASE COUNT          479 a          658 c          668 g          412 t
ORIGIN      
        1 gaggtgctcg acgatcctca gtcgttcaag accaaggaag agtccaagct gtcagtgctg
       61 catacgattc tgcagcccga gaaatatccg gatctgtaca aggatttctc gcacgtcgtg
      121 cgcatcaact actatccgcc gcgcggcgac aacaaggaag gctgggataa catcgacatc
      181 ttcggatgga tgaactaccc catgcagatc aagatcaact tcctctgccg cgattcgatt
      241 ctcgctgcgc ctcttgtgct cgatgttgct cttttcagcg acttcgcaca gcgcgcgggg
      301 atgaagggca tccaggagtg gctgtcattc ttctacaaga gcccgatgac cgcgcccgga
      361 ttgcagcctg agcacgatct tttcatacag cagaccaaga tgaagaacac gcttcgccat
      421 ctcatgggcg aggatcagat cactcacctc ggtctcgagt actacgcgta atgaagaaag
      481 cgacgctgat gtggacatcc ctgctcgcgg ccgcgtccgt ttccctggca tcgtgcggcg
      541 gtaacaacaa ccgcgcggca gagatacggc agtggaccga cgacatggct ttccgcatca
      601 gcgtcgtgcc ggctcctccc atcgcggagg agatgacggt gttcaaggtc gtcgtgtcgg
      661 acaaggagag cggccagccc atacagctag ggcagggacg catcttcgcg acgagccagg
      721 agcacgcgca gactggagac ggattggcga agggtcccga agtcggcacc tattacgcgc
      781 acgttcgctt tccggtgtcg ggtgactggg ccgtcggcct gcagttccgc agggattcaa
      841 ctagcaagct cgagcgcacg caggactggc agcagcaggt tctgccggct ccgccgctcg
      901 gtcagagtac agatacgacc aaacgctaac aatgcgacat tttttcagat ctcatctgaa
      961 gcccgatcag gttctcgcga ttgcggacac gttctttccg acgattcagg aaaacagaac
     1021 ggcgtccgca gctcgcactc gtgatttctc cggcccactc ggcgcgctca agctcagcgt
     1081 gaacatggag ggcggacact acacgttcgt acagatcgac acggatcaga ctggcgagag
     1141 ccggctggat cgcaacgcca agaagttctt cgtcgagctg catcgggccg aagatccggc
     1201 gtacaagctc actgcttcat actaggccgc gtcatgacgc tgacgcgcga gcagaagctc
     1261 gagctgtact actacatgcg gctcacgcgc tcgcttgaag agcgcctcgt aaatctctat
     1321 cggcagacga aggtaatcgg cgggctgttc cgctcgctcg gccaggaagc agacgcagtt
     1381 ggcgccgcat acgcactcga taaatcgaag ggcgacattc tctcgccgct cattcgcaat
     1441 ctcggtgcga tgctcgtgcg cggcgccgag ccgacggagg tcatcaagca gtacatggcc
     1501 aagggcgact cgcccacgaa gggaaaggag ctcaacattc acttcggcgg catcgagcgc
     1561 ggtttcgtcg gacagatctc ccatctgggt gacatggttc ccgtgatggc tggcgtcacg
     1621 ctcgcagcga agatgcgcgg tgaggatcgc gttggtctcg tattcgttgg cgacggtgct
     1681 acctcgacgg gcgcgttcca cgaaggaatc aactttgccg ccgtgcagcg ttgtccgctc
     1741 gtcgtgatcg tcgagaacaa cggatacgca tactcgactc cggtctcgag acaaaccgcc
     1801 gcgaagtcgt tcgtcgacaa ggccgttggc tacggaattc cgggtgagca ggcggatggc
     1861 aacgatgtgc ttgcagtgta cgacgtcacc aggcgagctg tggatcgcgc ccggcgcggt
     1921 gaaggcgtga cgcttatcga gctcatcacc taccgcagaa agggacacgc cgagcacgac
     1981 aaccaatcct acgtccctga aggggagatc gatcgctggg ccgccgagaa cgatccgata
     2041 gaccgctttg taaaggtgct gcgcgcagag aaggtcaagg catcggagct cacagcgatc
     2101 gacgaccgca tcaaggcgga gatcgatgct gcgaccgatg ttgccgacgc gtcaccaatg
     2161 ccggagccgg tcgaagcgct tcgcggcgta tacgcaggcc aggccaacgt tccgccg
//
LOCUS       DATIMD010000135         2906 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2650650, whole genome shotgun sequence.
ACCESSION   DATIMD010000135 DATIMD010000000
VERSION     DATIMD010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2906
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2650650"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..1839)
                     /locus_tag="VLI40_03045"
     CDS             complement(19..1839)
                     /locus_tag="VLI40_03045"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HSU96175.1"
                     /translation="MRSSAKYIWIFVTVAFIGGFLLYESSGLFGSAPITSTTPIATVN
                     GQDILVTTWQALAAQLEQQRTASTGESVSLDERQAIQDQAYDQLVSDALLSQEMRRRG
                     ITVSVDELTNAAKYSPPPQLMQDPELQTNGQFDLEKYQRFLASPTAKQSGLLLQLENY
                     YRDAIPKQKLYQQITSGLWISDATLWMNYRDAHDSAAISYAAFVPSDADVAATPVSDA
                     EIRSYYDAHKKDMSRVGHARVTFTEIPRTITAADSAAVRNHAIALRDSIVSGALKFED
                     AAKAESVDSASAVRGGDLGKGVKGRFVPAFETAAAALKPGEISPPVLTQFGYHLIRLD
                     SRNGDTLAMHHILLRIAQSDSDADRTDRRADTLAKMAASAETPDKFDAAVKALGLKAH
                     TADVTEGQPLVYDGQQIPSVSAWAFGGAKVGESSDLYDDDAGYYLARLDTLTPGGTPS
                     LDAAKRDIKLLLARKKAVQKEVDPARKFAIAASASSLAQAGKLLNTQVVQTDAFTRVS
                     GIPDAPNASRIVGAAFALPVGTVSEPIVTDNAVFVIEVNRRVDADRKTFDAAKDQLRG
                     QYLNSMQQARIQEFVANLKSAAKITDRRKEVEASMRRTSS"
     gene            1961..>2906
                     /locus_tag="VLI40_03050"
     CDS             1961..>2906
                     /locus_tag="VLI40_03050"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSU96176.1"
                     /translation="MADTGRLDELKRKFDENPKRYFAPLANEYRKAGEPELAIELCRT
                     YLPQQPNHMSGYIVYAQSLQDAGKTEEAAAVFKQALSLDPENIIALRNLGDISRNAGD
                     NVGAMRWYGKVLELDPRNEEISAFLASLSAPGTKAFVTPVTPERQAPPTIRPEPTPDA
                     SAVRLEDIFSQPDMAQTPFSAEERAEPEAPELQSEQVFEEVSSESFEVTEWPTAMDTP
                     IDLESDSTSVIEGPWHTATDEEPASEAAHWTDESAEERTPLRFAEFMPEEDAAFAPTP
                     EELGETEPAAEAEAAPVGEAGPELASPAPETAGTSDNIE"
BASE COUNT          549 a          917 c          877 g          563 t
ORIGIN      
        1 ggtcccgtca tcccgtcatc atgacgacgt ccggcgcatc gaggcctcga cttccttgcg
       61 gcggtcggtg atcttcgcgg ccgacttgag attcgccacg aactcctgaa tccgggcctg
      121 ctgcatcgag ttcagatact ggccacgcag ctggtccttg gctgcatcga acgtcttgcg
      181 atcggcgtcg actctccggt tcacctcgat cacgaacacc gcgttgtcgg tgacaatcgg
      241 ctcgctgacg gtaccaacgg ggagcgcgaa tgccgcgccg actattctcg acgcgttcgg
      301 cgcgtccgga atgccggata cccgtgtgaa cgcatccgtc tgtactacct gtgtgttcaa
      361 cagcttgccg gcctgcgcca gcgagctcgc ggatgccgcg atcgcaaact tgcgagccgg
      421 atccacttcc ttctgaactg ccttcttgcg cgcgagcaac aattttatgt cgcgcttcgc
      481 ggcgtccagc gatggcgtgc cgcccggtgt aagcgtatcg agtctggcca ggtagtagcc
      541 cgcatcgtca tcgtaaagat cgctgctctc gccaaccttg gctccgccga acgcccatgc
      601 cgaaacgctc ggaatctgct gcccatcgta gacgagcggc tggccttcgg tcacgtcggc
      661 ggtgtgcgcc ttgagaccga gcgcctttac cgcggcgtcg aacttgtccg gcgtttccgc
      721 ggatgcggcc atcttcgcga gcgtgtctgc ccggcgatcg gtgcggtccg catccgagtc
      781 gctttgcgcg atgcgcagca gaatgtggtg catcgcgagt gtgtcgccgt ttcgtgaatc
      841 cagccggata aggtgatatc cgaactgcgt cagaaccggc ggtgagatct cacccggctt
      901 tagcgctgct gcggcagtct cgaacgcggg gacgaatcgt cccttgaccc ccttgccgag
      961 atctccgccg cggacagccg acgcggaatc gacggactcc gctttcgctg cgtcttcgaa
     1021 cttcaacgcg ccgctgacga tgctgtcgcg caatgcgatc gcgtgatttc tcaccgccgc
     1081 agaatccgcc gcggtgatcg ttctcgggat ctcggtgaag gttacgcgcg cgtgtccgac
     1141 acgcgacatg tccttcttgt gcgcatcgta atagcttcga atttcggcgt cgctcacagg
     1201 tgtagccgcg acatccgcat cactcggcac gaacgccgcg tagctgatgg ccgcgctgtc
     1261 gtgtgcgtcg cggtagttca tccagagcgt cgcatccgag atccagagac cggacgttat
     1321 ctgctgatac agcttctgtt ttggaattgc gtcgcgatag tagttctcga gctgcaacag
     1381 cagtccgctc tgcttcgccg ttggactggc gagaaaacgc tggtacttct cgagatcgaa
     1441 ctgtccgttc gtctgcagct cgggatcctg catcagttgc ggaggcggac tgtacttggc
     1501 cgcgttggtg agctcgtcca ccgagaccgt gatcccgcga cggcgcatct cctggctcag
     1561 aagcgcgtcg ctcacgagct ggtcgtaggc ctgatcctga atcgcctggc gctcgtccag
     1621 cgagaccgac tcgccggtcg acgccgttcg ctgctgctcg agctgcgccg ccagcgcctg
     1681 ccaggtggtc acgagtatat cctgaccgtt gacagtagct atcggcgtag ttgacgttat
     1741 cggggcacta ccgaacaggc cggacgattc gtatagaagg aatccgccga tgaaagcgac
     1801 ggtgacgaaa atccagatgt attttgcgga actccgcatc gattgtagca tagcccggta
     1861 agctgttccc cagagtggac aaaatcaagg ttggggaagt atcttctcac cttcgcgccg
     1921 tagtcggcga aacaaacgtt tccccaacga gaggacgttg atggccgata cgggccggct
     1981 ggacgagcta aaacgcaagt tcgacgagaa tcccaagcgc tacttcgcgc ccctggccaa
     2041 cgagtatcgt aaggccggcg agcccgagct cgccatagag ctgtgcagga cctacctccc
     2101 gcaacagccc aaccacatga gcggctatat cgtctacgcc cagtcgctcc aggacgcagg
     2161 taagaccgaa gaggcggccg ctgtcttcaa gcaggccctc agtctcgacc ccgagaacat
     2221 catcgcgctc aggaacctcg gcgacatctc gcgcaacgcc ggcgacaacg tcggtgccat
     2281 gcgctggtac ggcaaggttc tcgagctgga tcccaggaac gaagagatct cggctttcct
     2341 tgcgtcgctc tccgcacccg gtacaaaggc gttcgtaact ccggtcaccc cggagcgtca
     2401 ggcgccgcca acgatccggc ccgagccgac gccagatgcg tcggcggtac gactcgaaga
     2461 catattctca cagcccgaca tggcacagac ccccttctcg gcagaagaga gggcagagcc
     2521 tgaagcgccc gaactacaat ccgaacaagt gttcgaagag gtttcgagtg agtcgttcga
     2581 ggtaacggaa tggccgactg cgatggatac gccaatcgac ctggaatcgg attccacctc
     2641 ggtcatcgag gggccgtggc ataccgcgac agacgaagag cctgcgtccg aggctgccca
     2701 ctggacggat gaaagcgccg aggagcgcac gccgcttcgt ttcgccgagt tcatgcccga
     2761 agaggacgcc gcatttgcgc cgactccgga agagctgggc gagaccgagc cggcggcaga
     2821 ggctgaagct gcgcccgtag gtgaggctgg gccggaactg gcgtctcctg cccccgaaac
     2881 cgccgggacg agtgataaca tcgaat
//
LOCUS       DATIMD010000136         1695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2072596, whole genome shotgun sequence.
ACCESSION   DATIMD010000136 DATIMD010000000
VERSION     DATIMD010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2072596"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VLI40_03055"
     CDS             <1..223
                     /locus_tag="VLI40_03055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HSU96177.1"
                     /translation="GTPILPVAIAGTRYAMAKGSFSFRRANAMCRVLEPIETRGMTAA
                     DIPALRDMTRQRISDARHQLQRELGGEQQ"
     gene            complement(277..>1695)
                     /gene="ggt"
                     /locus_tag="VLI40_03060"
     CDS             complement(277..>1695)
                     /gene="ggt"
                     /locus_tag="VLI40_03060"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HSU96178.1"
                     /translation="IRMANGDATAIDYRETAPLAATRDMYIENGKLTGKSTVGGLASG
                     VPGSVAGMAAALAKYGTMSLHDVMQPAIKLASDGFVVDSATSRGLGASAHLISQFAGA
                     AVFLPGGKPLPPGTLLRQPELAKTLRLIADQGPSAFYTGPIADEIVAQMKHDGGIITR
                     QDLASYKPEWRTPIVGKYRGYTLYAMPPSSSGGVTTVEILNQLETWKSLPPFNSAEYK
                     HLLAETFQRAFIDRNTKLGDPAFVTNPLEMLTDKAYARKLASTIQPDRATPSPSFAAA
                     AEPMHTTHYSVVDASGNAVSTTTTLNSGFGSGVFVADAGFFMNDEMDDFAAEPGKPNQ
                     FGLVQGEINAIQPGKRMLSAMSPTIVLDRNGKLMLVVGAAGGPTIITGVTQVILNVID
                     QHMSLPDAMFAPRMHDQAWPDEITYERGGFSQSATDSLTAMGYKLHAVSGLTNVNAVM
                     RGPDGRWVGVYEPRSNGGAVGY"
BASE COUNT          300 a          530 c          538 g          327 t
ORIGIN      
        1 cggaacgccg attttgccgg tcgcaatcgc ggggacgcgc tatgcgatgg ccaagggctc
       61 cttcagcttt cgccgcgcca acgcgatgtg cagggtgctg gagccgatcg aaacgcgggg
      121 catgaccgct gcggatatcc ccgcgctccg cgacatgaca cggcagcgca tttcggatgc
      181 gcgccatcaa ctccagcgcg agctcggagg cgaacagcaa taaaacggcg cgcggggcat
      241 cgtcccgcgc gccgtttttc cttgcgctgt cagagatcag tacccgaccg cgcctccgtt
      301 cgaacgtggc tcgtacactc cgacccagcg tccatcggga ccgcgcatga ccgcgttgac
      361 gttcgtcagg ccgcttacgg cgtggagctt gtaccccatc gcggtgagcg aatctgtcgc
      421 cgactgcgag aagccgcccc tctcgtatgt gatctcgtcg ggccacgcct gatcgtgcat
      481 gcgcggcgcg aacatcgcgt cgggaagaga catgtgctga tcgatcacgt tcagaatcac
      541 ctgcgtgacg cctgtgatga tcgtaggtcc gccagcggca cccaccacga gcatgagctt
      601 gccattgcga tcgagtacga tcgttggaga cattgcgctc aacatgcgct tgccaggctg
      661 gatcgcattg atctcaccct gcaccagccc gaactggttc ggcttgcccg gctcggctgc
      721 gaagtcgtcc atctcgtcgt tcatgaagaa acccgcgtcg gcgacaaaga caccggatcc
      781 gaatccgctg ttcaatgtcg tcgtcgtcga cacggcgttg ccggacgcgt ccactacgga
      841 atagtgcgtc gtgtgcatcg gctcggcggc ggccgcgaac gacggcgacg gcgtggcgcg
      901 atcgggctgg atggtcgacg cgagctttct ggcgtacgcc ttgtccgtca acatctccaa
      961 cggattcgta acgaaggccg gatcaccgag cttggtgttg cgatcgatga atgcgcgctg
     1021 gaacgtctcg gcgagaagat gcttgtactc ggcgctgttg aacggaggca gcgacttcca
     1081 tgtctcgagc tggttcagta tctcgaccgt ggtaacacca ccgctggaag acggcggcat
     1141 ggcgtacaac gtgtaaccgc ggtacttgcc aactatgggt gtgcgccatt ccggtttgta
     1201 cgacgcgaga tcctgtctgg tgatgatgcc gccgtcgtgt ttcatctgcg caacgatctc
     1261 atcggcgatc ggacctgtgt aaaacgcaga tggtccctga tcggcgatca ggcgcagcgt
     1321 cttcgccagc tccggctggc gaaggagagt tccgggcggg agcggcttgc cgcccggaag
     1381 aaataccgcc gctccggcaa actggctgat gagatgcgcg ctggcgccaa gcccgcgcga
     1441 ggtcgcgcta tcgacgacaa atccgtcaga cgcgagtttg atggccggct gcatcacgtc
     1501 gtgcagcgac atcgtgccgt actttgcgag tgcggccgcc attcccgcca cggaaccggg
     1561 aacgccggac gcgagcccgc caaccgtgct cttgcctgtg agcttgccgt tctcgatgta
     1621 catgtcgcgc gtcgcggcga gtggcgcagt ctcgcggtaa tcgatcgcgg ttgcatcgcc
     1681 gttcgccatg cggat
//
LOCUS       DATIMD010000137         5886 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1208464, whole genome shotgun sequence.
ACCESSION   DATIMD010000137 DATIMD010000000
VERSION     DATIMD010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5886
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1208464"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..570)
                     /locus_tag="VLI40_03065"
     CDS             complement(<1..570)
                     /locus_tag="VLI40_03065"
                     /inference="COORDINATES: protein motif:HMM:NF022187.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2520 domain-containing protein"
                     /protein_id="HSU96179.1"
                     /translation="MSERIFIIGAGKVGRGLAYAFRSAGLQVLGVHARTPRDGATTSG
                     EYPRTMSEANVIILAVSDSELNEACHTLATVAREKGSPVTHGTIVLHTSGTVTPAALG
                     ELRSAGSAAGTFHPLAPFSTPERGAAALHDGWVGIDGDPTACAAARRLAAAIGARTVN
                     IPPNGKSLYHAAAVMASNFPVVLAALAARI"
     gene            complement(567..2159)
                     /locus_tag="VLI40_03070"
     CDS             complement(567..2159)
                     /locus_tag="VLI40_03070"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSU96180.1"
                     /translation="MSNGRTRPKTIVLAAILAIALVAGAWMFQRGTITTKVNGTRLFS
                     QVSAIVRDNYVDTVSDARMYQLALDGMLSELDDPYDAYLTPERVNNLAERTSGIYAGI
                     GLQVDVRDGSLVVVNPLPGGPGEKAGILTGDRIVQIDGKTVSGWTAEEVQKLLRGAPG
                     SPVEVAIQHAGSATPVTLKLIRASIHHSAIKRAALLPSNVGYVALTMFSDSTARELKA
                     TIDSLVRAGATSLTLDLRSNPGGLLDQGVAVADLFLDRGERVASTAGRDSSDNVVFTD
                     SAAQQWPRLVVAILVDDKSASAAEVVAGALQDHDRAVVLGMTTYGKGSVQHIFPVPSG
                     GAVRLTTARWRTPLGRFISRPPPQPGADDADSEPARPKYRTDAGRTVLGGGGITPDVT
                     IGDTTAPPENLALMHALGANVSRFHDALTGYALQLKATNAIKSPDFVVTPAMLDEIYK
                     RMQARSVDVPRSTYDDAAPLVSRLFAYEVARYVFGADAEFRRKAEDDRVLIAAERLLA
                     ASHSQADALRRAGEMQHAGTRE"
     gene            complement(2156..2863)
                     /gene="tmk"
                     /locus_tag="VLI40_03075"
     CDS             complement(2156..2863)
                     /gene="tmk"
                     /locus_tag="VLI40_03075"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HSU96181.1"
                     /translation="MAEHGTVKRGELIVLEGAEGVGKTTQAGRLVAELTRGGVRCVHL
                     REPGGTSLGEAVRSILLSPAQTRTARAEALLFMASRAQLVSEKIQPALEAGDVVVLDR
                     FFLSTYAYQIHGRGLPENEIRAANQLAVGALVPTVTLVLHLPENDGLARAGKRSGHDY
                     MEQLGGEFHDRVGHAFDEFVTPGWQSRHPECGPIVRVDASGSADDVFSRMVAAISNHA
                     PQLGAELIGTLEQEVAK"
     gene            complement(2856..3212)
                     /locus_tag="VLI40_03080"
     CDS             complement(2856..3212)
                     /locus_tag="VLI40_03080"
                     /inference="COORDINATES: protein motif:HMM:NF017902.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF family regulator"
                     /protein_id="HSU96182.1"
                     /translation="MALEDKARELGRIIGQSDEYRAVTRANEALTADADATAVLRQME
                     GLRREAQAMLQRGEEPTEAMEKQLDDLLTKVQSNPSYQRVAVAQENLDKVMRHVNDWI
                     SDGIQKGAQSSIITLG"
     gene            complement(3222..4091)
                     /gene="prmC"
                     /locus_tag="VLI40_03085"
     CDS             complement(3222..4091)
                     /gene="prmC"
                     /locus_tag="VLI40_03085"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: protein motif:HMM:TIGR03534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HSU96183.1"
                     /translation="MGGGAARTDVRSVGALAVELQLLLGDTSPRLAQDVIAALLDVPR
                     FWPAANGSEAIEDSVCHAARLAVARLRAGAPFAYAVRRASFRHLTLDVDERVLIPRPE
                     TEGLVEQVLQLSGGTGGTAVDIGTGSGAIALSLASEGVFDRVVATDVSLDALAVARQN
                     ASRLAGALRAPVEFRHGSLLAPIRDLRAAVIVSNPPYIAYHEAAELPAGVRDWEPVLA
                     LLSGADGMTATEAIIRGAADLLDQGGILALEVDARRASLAAESLAVDPRYREISVRLD
                     LAGRERFVIARRS"
     gene            complement(4093..5160)
                     /gene="prfA"
                     /locus_tag="VLI40_03090"
     CDS             complement(4093..5160)
                     /gene="prfA"
                     /locus_tag="VLI40_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HSU96184.1"
                     /translation="MSLRDRLATAVARAADVEAQLSDPATARDSRLLAELGREHRQLQ
                     TVMSLAQRLERAERERTEALELAESDDPEMASEARAEEQRLTDEIAQIEIELKPALVP
                     PDPLDDRPAIVEIRAGTGGDEAALFAAELWRMYTRYCEARRWRVEIISLSEATLGGVK
                     EVIFKIIGTGAFGAMRWESGVHRVQRVPVTESQGRTHTSAATVAVLPEAEEVDVRIED
                     KDLRIDVFRSSGPGGQSVNTTDSAVRITHIPSGIVVSQQDQKSQLQNKIKGMEVLRAR
                     LLDARLAEREAERARMRKTQVGTGDRSAKIRTYNFPQSRVTDHRIGLTSHDLAGIMNG
                     GIEPFIDALRMADVEERLSSE"
     gene            complement(5365..5580)
                     /gene="rpmE"
                     /locus_tag="VLI40_03095"
     CDS             complement(5365..5580)
                     /gene="rpmE"
                     /locus_tag="VLI40_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010242421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HSU96185.1"
                     /translation="MKPDIHPLYATAKVHCACGNTFETRSTVANISTDICAVCHPFYT
                     GKAKMVDTAGRVERFRQKYGRKEKATA"
BASE COUNT         1020 a         1991 c         1782 g         1093 t
ORIGIN      
        1 gatgcgagcc gctagtgcag cgagcaccac gggaaagttc gatgccatga cagccgcggc
       61 atgatacagt gacttcccgt tgggcggaat gttcacggtt cgagcgccga tcgcggccgc
      121 aagcctgcgg gccgcggcgc acgctgtagg gtcgccgtcg attcccaccc atccatcgtg
      181 cagcgccgca gcaccgcgct caggcgtcga aaatggcgcc agcggatgaa atgtaccggc
      241 ggccgatcca gcgctcctca gctctcctag cgcagccggt gtgacggtac cggacgtgtg
      301 aagcacgatc gttccgtgtg tgaccggcga tcccttttcg cgtgcgacgg tcgccagtgt
      361 atggcacgcc tcgttcagct cactgtccga aacggcgagg attatgacgt tggcctcgct
      421 catcgtgcgc gggtactccc cgctcgtcgt ggcaccgtcg cgcggggttc gtgcatgtac
      481 acccaacacc tgcaaaccgg cgcttcggaa cgcatacgca agcccgcgtc ccaccttccc
      541 ggcgccgatg atgaatatcc gctcgctcac tccctcgtcc cggcgtgctg catctctcct
      601 gctctgcgca gcgcgtcggc ctgtgaatgc gaagcagcaa gcagtcgctc cgcggcgatc
      661 aatacgcggt cgtcctccgc ctttctacga aactccgcgt cggctccgaa cacataccgc
      721 gcaacttcgt acgcgaacag gcgcgagacc agcggcgccg cgtcgtcata tgtgctgcga
      781 ggaacgtcca cggaccgcgc ctgcatccgc ttgtagatct cgtccagcat tgccggtgtg
      841 acgacgaagt ccggtgactt gatcgcgttg gtcgccttga gttgcagtgc gtaacccgtc
      901 agagcgtcgt gaaaccgcga tacgttcgcc cccaacgcgt gcatcagcgc gagattttcc
      961 ggcggagcgg tcgtgtcgcc aatcgtgacg tcgggagtga ttccgccgcc gccgagaacc
     1021 gtgcggcctg catccgtccg atattttggc cgcgcaggct cggagtcggc atcatccgcg
     1081 ccgggctgcg gaggtggacg cgagatgaac ctgccgagcg gtgtgcgcca gcgcgccgtg
     1141 gtgagcctta ctgcaccacc ggaaggcacc gggaatatgt gctgtacact tcccttgcca
     1201 tacgtagtca tgcccagcac gactgcacgg tcgtgatcct gcaacgcgcc tgcgacaact
     1261 tcggccgcgc tcgccgattt gtcatccacc agtatcgcca cgacgagcct gggccattgc
     1321 tgcgctgcgc tgtcggtgaa gaccacattg tcgctggaat cccgacccgc ggtgctggcg
     1381 acgcgctctc ctcgatcgag aaacagatcc gcgaccgcga cgccctgatc gagcagacca
     1441 ccgggattgg agcgaagatc cagcgtaagc gacgtagcgc ccgcgcgcac cagtgagtca
     1501 atcgtcgcct tcagctcgcg tgccgtggaa tcgctgaaca tcgtcaacgc cacgtacccg
     1561 acgttggacg gcagcagtgc cgcacgcttg atcgcgctgt gatggatcga ggcgcggatc
     1621 agcttgagtg tcaccggagt tgcagagcca gcatgctgaa tcgcaacctc gactggcgag
     1681 cccggggcgc cacgcaacag cttctgcact tcctcggcag tccatccgct gacagtcttt
     1741 ccgtcgatct ggacgatgcg atcgcccgtg agaatgcctg ccttctcacc aggaccaccc
     1801 ggcagcggat tcaccaccac gagcgagcca tcgcgcacat cgacctgcag cccgattcca
     1861 gcgtaaattc ccgacgttcg ctcggccagg ttgttgacgc gctccggtgt gagatacgca
     1921 tcatacggat cgtccagctc cgacaacatg ccatcgagcg cgagctgata catgcgtgcg
     1981 tcgctcaccg tgtcgacgta gttgtcgcgt acgatcgcac tcacctggga aaacagtctc
     2041 gtgccgttca ccttggtggt gatagtgcca cgctggaaca tccacgcacc ggcgacgagc
     2101 gcaatcgcga gtatcgctgc gagtacgatc gttttgggac gtgttcttcc gttactcact
     2161 tcgctacctc ctgctccagc gtaccgatca gctcggcgcc aagttgcggc gcgtggttgc
     2221 ttatcgcggc gaccatgcga ctgaacacgt cgtccgcaga tccactcgca tcgacgcgca
     2281 cgatcgggcc gcactccgga tggcgagatt gccatcccgg cgtcacaaac tcgtcgaacg
     2341 cgtgaccaac acggtcgtgg aattcgccgc cgagctgctc catgtagtcg tgcccggatc
     2401 gctttccggc gcgcgcgagt ccgtcattct cagggagatg aagcacgaga gtaaccgtcg
     2461 gcacgagcgc tccgaccgcg agctggttcg cggcgcgtat ctcgttctcc ggcagaccgc
     2521 gtccatgaat ctggtacgcg tacgtcgaga gaaaaaagcg atcgagtacg accacatcgc
     2581 cagcttcgag ggcaggctga atcttctcgc tcaccagctg cgcgcgtgat gccatgaaga
     2641 gcaacgcctc tgcacgcgcg gttctcgtct gcgctggcga gagcagaatg cttcgaaccg
     2701 cttcgcccag cgacgttccg ccgggttcac gaagatggac acaacgtaca ccgccacgcg
     2761 tgagctctgc gacaagacga ccggcctggg tcgtcttccc cacgccctct gctccctcga
     2821 ggacgatcaa ctctccgcgc ttcacggtac cgtgctcagc caagtgtgat tatcgagctc
     2881 tgcgcaccct tctggatgcc gtcgctgatc cagtcattca cgtgccgcat gaccttgtcg
     2941 agattttcct gagcgaccgc gacgcgctgg tacgacggat tgctctgtac cttggtgagc
     3001 aggtcgtcga gttgcttttc catcgcttcc gtaggctcct caccgcgctg cagcatggcc
     3061 tgggcttcgc gcctgagccc ttccatctgc cgcaacacgg cagtggcatc ggcgtcggca
     3121 gtcagagctt cgttcgcgcg ggtcaccgca cggtattcgt cgctctgtcc gattatcctg
     3181 cccagctcac gagccttgtc ttccagtgcc acacgtacct cctaggagcg ccgcgcgatg
     3241 acgaatcgct cgcgccccgc caggtccagc cgaacggaga tctcgcgata ccgaggatcg
     3301 accgccagcg attcagcggc gagcgacgcc cgccgcgcat caacttcgag tgcaaggatg
     3361 ccgccctggt ccaacagatc ggcggcaccg cggattatcg cctccgtggc cgtcatcccg
     3421 tccgccccgc tcaacagcgc gagcacgggc tcccagtcgc gcacaccagc cggcaactcg
     3481 gcggcctcat gatatgcaat gtaaggggga ttcgagacga ttaccgcggc acgcaggtcc
     3541 cgtatggggg caagcaacga gccgtgccgg aactcgaccg gcgcccgtag cgcacctgcc
     3601 agtcttgacg cgttctgcct ggcaaccgcg agagcgtcca gcgacacatc cgtcgccacg
     3661 actctgtcga atacgccctc gctggccagc gagagtgcga tcgccccgga cccggtgcca
     3721 atgtccaccg ccgtaccacc cgtgccgccc gagagctgca gcacctgctc caccaaccct
     3781 tcggtctccg ggcgagggat aagcacgcgc tcgtccacgt ccagggtcag gtgcctgaac
     3841 gacgcacggc gcactgcata ggcgaaggga gctccggctc gcaatcgtgc gaccgcgagc
     3901 ctggcagcgt ggcagacaga gtcctcgatc gcctcactgc cgttggcagc gggccagaat
     3961 cggggcacat ccagcaacgc cgctatgacg tcctgcgcca gacgcggcga tgtgtcgccg
     4021 agcagcagtt gcagctcgac cgcgagcgcg ccgacgctgc gcacatcggt gcgcgccgcg
     4081 ccaccgccca tgtcactcac tgctcagacg ctcctcgacg tcggccatcc gcagcgcatc
     4141 gatgaacggc tctattccac cgttcatgat tcccgcgaga tcgtgcgacg tgagaccaat
     4201 gcggtgatcc gtgacacgac tctgcggaaa gttgtacgtg cggatctttg ccgatctgtc
     4261 acccgtaccg acctgcgtct tgcgcatgcg cgcgcgctcc gcttcacgct ccgcgagtcg
     4321 cgcgtctagc agtcgcgcgc gcagtacttc cattcccttg atcttgttct gcagctgcga
     4381 cttctggtcc tgctgcgaca cgacgatccc cgacgggatg tgcgtgatgc gcacggccga
     4441 atccgtcgta ttaaccgatt gcccgcccgg cccggaagaa cggaaaacat cgatgcggag
     4501 gtccttgtcc tcgatgcgca catcgacttc ctccgcctcg ggcagaactg ccacagtcgc
     4561 cgcggacgtg tgcgttcgtc cctggctctc ggtcaccggc acgcgctgca cgcggtgcac
     4621 gcccgactcc cagcgcatcg caccgaacgc gccggtgccg atgatcttga agatgacttc
     4681 cttgactcca ccgagtgtgg cctcggacag cgagatgatc tcgacgcgcc agcgacgcgc
     4741 ctcgcagtag cgtgtgtaca tgcgccacaa ttcagcggcg aacagcgcag cttcgtcgcc
     4801 gccggtgcca gcccggatct cgacaatggc cggccggtcg tcgagcggat cgggcggaac
     4861 gagcgctggc ttgagctcta tctcgatctg cgcaatctcg tcggtgagcc gctgttcttc
     4921 agcgcgggcc tccgacgcca tctcggggtc gtccgactcc gcgagctcga gcgcctcggt
     4981 gcgctcacgc tcggcgcgtt ccaagcgctg cgcgagcgac ataacagttt gcagctggcg
     5041 atgctcgcgg cccagttccg cgagaagtct ggaatcgcgc gcggtcgccg gatcgctcaa
     5101 ttgagcttcg acgtcggctg cccgcgcaac ggcggtagcg aggcggtcgc gaaggctcat
     5161 cgagggcggg cggtcattgt ggtgcgctgc aaaagatcac tcatcaagct agcagaagaa
     5221 ggcgcgccgc tgaatgccgg cgccgtcgtc gcgtatgttg ccgcgaatgt tgtcgcgcat
     5281 ttctgcgcgt ggctgttgca tggttgtcgg aaacacgaaa gcccacgaca ttcgtgggcc
     5341 ttcggtaaat cggaacgcga gccgctaggc ggtcgccttc tcctttcgtc cgtacttctg
     5401 acggaaacgc tcgacgcgac ctgccgtatc gaccatcttg gccttgcccg tatagaacgg
     5461 atggcaaacg gcgcagatgt cagtgctgat gttggcgacc gtggagcgtg tctcgaacgt
     5521 attgccgcac gcgcagtgga ccttcgctgt cgcgtacagg ggatggatgt ctggtttcat
     5581 tgaattgacc tcgggtgtgg ctagcctcta aagataatcc ggccgggtgg catatggaag
     5641 ccattcgacg agcccccggc agcggccggc ccagcgccaa ccccggtcgc tttgcagagt
     5701 gctcggagca gcctgggcgc cccgatcgtc gtaccgcggg caggcacggg ggcgagtcct
     5761 caggggtccg gggcttgctg taggatcata gctcttccca gaggatcaga tgttcacccg
     5821 cacttcgctc tgtgctgccg cactcgcggc ctccgtactc gcggcctccg tcggtctgcc
     5881 cggatg
//
LOCUS       DATIMD010000138        16483 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4382458, whole genome shotgun sequence.
ACCESSION   DATIMD010000138 DATIMD010000000
VERSION     DATIMD010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 16483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16483
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4382458"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..1687)
                     /locus_tag="VLI40_03100"
     CDS             complement(125..1687)
                     /locus_tag="VLI40_03100"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HSU96186.1"
                     /translation="MSPTVFAYIGLFTLLLVGAAAAVEWGMQGRGVARHVWTIAIVLA
                     VIAPSGVLGAHAFRERTAASAAPGNRVDVLATVIVSSGRSVVDHSSWLIGRDALIRLL
                     APSRRALHAALAGVAQDVAAMAVVAWLVLSTSLLVWLAAGVLYWQRTRRSWRRMTLDG
                     ISIDVSVATGPAVVGLLSHRIVLPSWATTMQPEHRRLVLAHESEHINARDPERLMLAI
                     AALVLMPWNVGLWWCAARLRRAIELDCDMRVLERYPGAKDYGRVLLEVAARGRNSGPL
                     AIPMVALLRLPSELELRLRAMTSARTMGLRSVILSGLAAVVAVSAAFSTPVPPLLRQR
                     PAAAERSARTDIRSDTGSRRRPDSLAQARDAMDSLARIDRAIAARQEALADTRNQVSA
                     LTMQRRELASRLRATAPKASGTGSHTTYFSFQVAKPARMLANTPTPIYPDSLRRAGVD
                     GEVEAEFTVDTTGRVDQAAGIKITDATNGLFAAAVRSALPRMKFYPAEIGGHKVRQLV
                     QQPFTFAIRKDP"
     gene            complement(1684..2055)
                     /locus_tag="VLI40_03105"
     CDS             complement(1684..2055)
                     /locus_tag="VLI40_03105"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HSU96187.1"
                     /translation="MQRLTPREIELMTVLWERGPSTVAEVRDALGDGSAYTTILTLLR
                     VLEEKGHVAREVEGRAHRYAALIERDEASSSAIDRVLGQFFRGSPERLLTQLVSDREL
                     DDATLRRLRALLDERLEEDSK"
     gene            complement(2186..2887)
                     /locus_tag="VLI40_03110"
     CDS             complement(2186..2887)
                     /locus_tag="VLI40_03110"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HSU96188.1"
                     /translation="MVTHLLESGAHRRSSVAGAIPSIALHSALILAAINATAHAALRA
                     PDRPHVVSLPLYPPERRIAPPVRHQASGARSPNRDWVEAAPTVDPVVPSFTGHTFRFD
                     PDGVHAPVVHGQEFGDGVTADGGMHGPDAGSVAVLSSEQVDRQAEPLTGTLAPRYPEA
                     LRASGLEGTVVARFVVDSAGRVEAGSFVTVGSANPLFVAAVESALSRARFRPAESRGM
                     RVRQLVEQSFTFVLH"
     gene            3060..4172
                     /locus_tag="VLI40_03115"
     CDS             3060..4172
                     /locus_tag="VLI40_03115"
                     /inference="COORDINATES: protein motif:HMM:NF013811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96189.1"
                     /translation="MTHPRIRPTILLATLLLLAIPQIASSQSPHRTRNVVLIVSDGLR
                     WQEIFQGADSQLMNRKYGHVEDTAGLRREFMRGNADSARTALFPFLWNVVAKQGEIFG
                     NRTEQSDADVTNGFKFSYPGYNEMISGHPDPRINSNNAGPNPNLTVFEWLNARPGLAG
                     RVAVFGTWDEFADIFNRGRSHLPIWAAFDQPPVATPPTARDSLLVDLYGTTTRLWSDL
                     AYDSFMQAEVRGYLARSHPRVMFVGYGETDEWAHMGRYDMTLKSAHQFDQFVGDLWSA
                     MQQVPQYRDSTTFIITADHGRGSGLTAWTDHGADVTGAEAIWIAVIGPDTPARGERVH
                     VARVTQSQIAATIASLLGEDYSAAVPTAAPPLPVRR"
     gene            4337..5566
                     /gene="rocD"
                     /locus_tag="VLI40_03120"
     CDS             4337..5566
                     /gene="rocD"
                     /locus_tag="VLI40_03120"
                     /EC_number="2.6.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004587 - ornithine aminotransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HSU96190.1"
                     /translation="MTAVANNTESAPATSADYIALEDEWGAHNYHPLDIVIERAAGPW
                     VYDVDGKRYLDCLSAYSAVNQGHCHPRILATMVEQAHRVTLTSRAFRNEQLPRFCEEV
                     AQLCGMEMVLPMNTGAEAVESAIKAARRWGYEIKGIPADRAEIVVFENNFHGRTTTIV
                     GFSSEPSYRAGFGPFTPGFRLIPYGDIDALKAAITPNTCAVLMEPIQCEAGILIPPDG
                     YLRATSELCRENNVLFMADEIQTGLGRTGRMFACDHEGVKPDVYILGKALAGGFYPVS
                     AVVSSREVLGVLRAGTHGSTFGGNPLGCAVARTALRVLEEENLVQRSADLGAWFKSQV
                     ASIKHPDIKSVRGRGLMVGIELHVPARSYCEALMRLGMLCKETHDHVIRLSPPLVTSR
                     EDLEWALVQLRTVFATR"
     gene            complement(5637..6098)
                     /locus_tag="VLI40_03125"
     CDS             complement(5637..6098)
                     /locus_tag="VLI40_03125"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HSU96191.1"
                     /translation="MNRLFDDALSRTTPTAALAPPVDVREDNHEIALSVELPGVKPED
                     VEVTSDNGMLTVRGHKTAERKEGDGTEYHLVERSYGSFTRSFRLPKGVDDSKITANFS
                     NGVLDVHVPKAALPQPKKIAIGSGDGNGNAQVQGKGTENANQQKSVPVEHK"
     gene            6428..7972
                     /locus_tag="VLI40_03130"
     CDS             6428..7972
                     /locus_tag="VLI40_03130"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU96192.1"
                     /translation="MSEDSASSTLVGALADIAICLSDARPTELVAQDVLERARVTVGT
                     PELAVWLDIGGELVRTWGAGPEEASVDELRAALAAAAPGMLAREMSFGPRRVGILLAR
                     VGTDAGEGEPVERFLEALAALLAAFVANSERSRRLEGDLQIRMREVQEQKLFTETVLD
                     LLPLGLYVIDRDYRITVWNRKRETGMQGVSREEAIGRTIFEILHRQPEDVVRREFDEV
                     FATGKTQQFQTESSASGALRTYRLSKIPIRDHAGIVTHIITIGEDITDWVEAREAVAQ
                     NEKLAAIGRLAAGIMHEINNPLATIAACAETMALETKINDNASQAGSESTPDSAPEYL
                     KIIESEVQRCKRIIDGLLDFSRPRAQERQSLQVNTVVERALFLLKHHARFKQLTVQAQ
                     LGTDLATVHASSEQLIQVMIALLMNAADAMPQYGKVLIRTRVAPRGARHVVIEVQDEG
                     SGMTRNEMSRIFEPFYTTKEPGRGTGLGLAICHGIVADHGGRIEVSSEPGKGTRFTIL
                     LPMEEA"
     gene            7969..9306
                     /locus_tag="VLI40_03135"
     CDS             7969..9306
                     /locus_tag="VLI40_03135"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU96193.1"
                     /translation="MSADRSAPIRVLIAEDEEHLGAILEHFLRSRGYAVTMCRDGRAA
                     LTELHAVPYDVALIDIVMPEMDGLEVLRHLQNEPAPPEVIIITGNGTIDTAITAIKLG
                     AYDYISKPYRMAEIDVMVRRAWEKRELGKANVMLRARTRELPSEMSSRNPLMREVLDR
                     LPELAQSNAPVVITGERGVGKSYVARHLHVLSGRVRDSLIEVRQGRGALADAADLAGR
                     QGVPSGGAMPTGAFLAADRGTTVIDIAALGEEARAVLHDAIVSGTFTRIGGSHSLPLT
                     TRLIICVDDPADGFGSSIAAEHLAIPPLRTRHEDLAPLITELLAEQTGPVHTIAPDAL
                     EVLASYSWPGNVRELGVVLARCALLAPKENIAAGDLRMLLSTGTVGVEGRGAPLSDLE
                     KLHIEAMLVRFHWHQGRAAEALGISTKTLYRKMREFGFRRPRKRKFARTRPEE"
     gene            9303..9971
                     /locus_tag="VLI40_03140"
     CDS             9303..9971
                     /locus_tag="VLI40_03140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSU96194.1"
                     /translation="MKILVIEDDPTVGQFVKRGLEEQRWTVDLTENGNDGETLATAGD
                     YDLVILDMRLPGKSGMEVLHDLRARNFQRPVLVLTAQDAVDAKVQTLRAGADDYVTKP
                     FAFEELLARVEALARRPRAMASPVMQVADLTLDVDTREVRRAGNLIELTPKEYTVLEY
                     LMRHQGRVMSRTLITEYAWGYHFDPGTNIVDVVINHLRKKIDADHEKKLISTVRGVGY
                     VVRG"
     gene            9968..11443
                     /locus_tag="VLI40_03145"
     CDS             9968..11443
                     /locus_tag="VLI40_03145"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU96195.1"
                     /translation="MIPARLKLTFVFAGAMVVTGAALGIAVSASRTAGAYSAIAREAL
                     ADGDLAMRIIDQASKDREPVVVRDSLGAEQIARSVSARLEVIPGYLVIVGRKANVVFT
                     SFDTRDLSDEDWTTLQRGIADLPDDGPAGVISVGQERILFVAHAIHDSTTKLSRVVAG
                     VRVRGAQSLPTELVTTIFAVVPLIIALASWGMWLMLGGTFRRIERVRRGVADITDGRS
                     LHRRLSDDEASPEIAALINTLNSMIARLETSFAALRRFTADASHELKTPLAVLRADVE
                     RAMSATTRKDDRLVALEEALHETTRMADLVESLLTLARADEGRFDLYRERVDLSELTQ
                     EVYETAVILGEGAGVTVNLPFTTEVTIAGDRTRLRQLFLNLVTNAIKYTPRGGRVDIG
                     LGRHPNNVTFAVRDTGAGIAAADLPHVFERFWRADRARSRTAERGGFGLGLAISQWIA
                     QAHGGTLTVQSRLGKGSLFTLTLPLDAADHADGDDAALQEE"
     gene            11612..12325
                     /locus_tag="VLI40_03150"
     CDS             11612..12325
                     /locus_tag="VLI40_03150"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HSU96196.1"
                     /translation="MFNQLIESKRKKKRSPGTTAFSIGLHAGLIGLAVWATANAAIKN
                     EKPKAEKIEFVQVKKDEPPPPKKEAPPPPKATVAPPPPKGFQVPTAPPIVPVKIPDID
                     LNKKATNVNDFSGKGVEGGVANGIVGGKGPVSNTETYFSFQVEKPAAMASGTVTPSYP
                     ETLRSAGIEGEVDAEFTVDTTGRVDQAAGIKITKATNDLFAAAVKSALPRMKFYPAEI
                     GGHKVRQLVQQPFTFTITH"
     gene            12356..13096
                     /locus_tag="VLI40_03155"
     CDS             12356..13096
                     /locus_tag="VLI40_03155"
                     /inference="COORDINATES: protein motif:HMM:NF013760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HSU96197.1"
                     /translation="MHLSLIDLWGQMAGFARGIVYVLAIMSIWTLSISIKKWWELKTA
                     QNETRKFAPEFSQFLEEDNLVEAANLSERYKKSHVARVLAGALSETRALVQDGSVTIA
                     DINSAERAIEREMLMTITDLKRGLGVLATSGATAPFVGLLGTTMGIINAFTGMAVSGS
                     GGLSAISGGISEALITTALGLLVAIPAVWLFNYFQTKVDNLTAEMTYTSKEMIDYLIK
                     NVSGEFGRSRFTREFNTTATAGNAPISK"
     gene            13197..13682
                     /locus_tag="VLI40_03160"
     CDS             13197..13682
                     /locus_tag="VLI40_03160"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSU96198.1"
                     /translation="MAMSTSGGNAVRADPNVTPMIDVMLVLLIIFMVIIPTLVSGVNA
                     QPPAGQNLAPHPQQDQDQLLGIDNQGQYYLNRSAIPNGSLQTALADIYSKRTEDKILY
                     VKADKNLDYGKILDALDVAAKAGVRMTAMVTDQAPGTHSVIPSDNIEATSAGTGTGGS
                     K"
     gene            13682..14101
                     /locus_tag="VLI40_03165"
     CDS             13682..14101
                     /locus_tag="VLI40_03165"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSU96199.1"
                     /translation="MAMSTGGGRGGFTSEPNLTPMIDVLLVLLIIFMVIVPTARKALD
                     VQLPDPNVQPTTSPNTDQIVLEVGKDGSYLINKQPVPGGASGLSQMIHNTFDKRPDKI
                     MFVKGDPAAKYQQIIQAMDIARGSGVLVIGVTPKSTQ"
     gene            14197..14913
                     /locus_tag="VLI40_03170"
     CDS             14197..14913
                     /locus_tag="VLI40_03170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96200.1"
                     /translation="MLFLLRPALDSGIDYGHREGAGGAGPAGGGGGGLGNNAAPKLRF
                     VQIAPQAAAPAATQTPPTKTAIKPVPPIVPPIPTPPPPKPVPVAPVTPPPTAAATTAT
                     TSAATSTAGAGNGIGKNGGAGAGPGSGGGVGSGEGPGKGSGVGPGTGGGAAKDYPPTL
                     KQFVLPPLPTPASVRGFKLTAWFDVDSTGKATLLRFTPTPDRGYNDRVRETLLALRFR
                     PAVRADGVAIRDTVDIQVLF"
     gene            15122..>16483
                     /locus_tag="VLI40_03175"
     CDS             15122..>16483
                     /locus_tag="VLI40_03175"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSU96201.1"
                     /translation="MNNKTSRSATGTDTATAESNFVKAMTLTDATMLVAGTMIGSGIF
                     IVSSTIAGLVQTPFWLISVWVLTGVITLLGALAYGELAAMFPRAGGQYVFLRESMGPV
                     VGFLYGWTLFVVIQTGTVAAVAVAFGKFLGVLWPAMTPDLYPWFPHFSFTLTGAPVSV
                     GLSPQRVAALITVWVLTWINLRGVRQGKLVQTTLTIAKVGVLALLVILGLTVGRNATA
                     IMANFGAGNFAPHVDINGAFILAFGAAMVGSLFSSDSWNNVTFAAAEVQNPKRNLPLA
                     LALGAGSVTVLYILANFAYLTVLPMHGTAAGTSVLARGIQFATQQRVGTATAEMIFGA
                     AGGSIVAAAILVSTFGCNNGLILSGARVYWAMARDGLFFSRAGKLSAREVPAFGLVIQ
                     AIWTSLLCLTGTYDQLLNYVIFAQLLFYAATTTGLFVLRRTRPDAERPYKAVGYPVLP
                     GLYI"
BASE COUNT         3180 a         5115 c         5079 g         3109 t
ORIGIN      
        1 gcatctgtac gtgcggcttg acgcaactgc cgcaggccat cagccagata caataccgga
       61 aacgcagcat ggtttgcgtc acgattggtt gcacgacgat cgatgatatt cctgtgccga
      121 ttgcctatgg atcctttctg attgcgaacg tgaacggttg ctgcacgagc tgtctgacct
      181 tatgtccgcc gatctcggca ggatagaact tcatgcgcgg cagtgcggac ctgacggcgg
      241 cggcgaacag accattggtt gcgtcggtga tcttgatccc agcagcctga tctacgcgac
      301 ccgtggtgtc caccgtgaat tccgcttcga cctctccgtc aactccggcg cgccgcaagc
      361 tatccggata gataggagtc ggcgtgttcg caagcatgcg cgccggcttc gcgacctgga
      421 acgagaagta cgtcgtgtgg ctcccggtgc ctgacgcctt cggcgccgtc gcgcgcagac
      481 ggctggcgag ctcccgcctc tgcatggtga gcgcagatac ctgattccgt gtgtcggcga
      541 gagcttcctg cctggctgcg attgcgcgat cgatcctggc gagactgtcc attgcatctc
      601 gtgcctgcgc cagactgtca ggtcggcgtc tggagcctgt gtcgctgcga atatccgttc
      661 gtgcactgcg ctcagcagca gccgggcgct ggcgtagtag tggtggcacg ggcgtcgaga
      721 atgctgcgga aacagcgacg accgcggcaa ggccactgag aatcacactc cgcaatccca
      781 tcgttcgggc gctcgtcatc gcacgcagtc tgagctcgag ttccgacggc agcctcagca
      841 gcgccaccat cggaatggcg agcggcccac tgttccttcc acgtgccgca acctccagca
      901 acacccggcc gtaatctttc gcgcccgggt accgctcgag cacgcgcatg tcgcaatcca
      961 gctcgatcgc gcgcctgagt ctcgccgcgc accaccacag tccgacgttc cacggcatca
     1021 ggaccaatgc ggcgatcgca agcatcaatc gctcgggatc gcgcgcgttg atgtgctcgc
     1081 tctcatgtgc gaggaccagc cggcgatgtt ccggctgcat cgtcgttgcc cacgatggca
     1141 gcacgatccg gtgcgacagc aagcccacca ccgcgggccc ggtcgcgacg gacacatcta
     1201 tgcttatgcc gtccagtgtc attcgtcgcc acgaccggcg cgtgcgttgc cagtacaaca
     1261 cacccgctgc aagccacacg agcaacgatg tcgacaatac cagccatgcg acgacagcca
     1321 tcgccgcaac gtcctgagcg acgcctgcaa gtgcggcatg caacgcgcgg cgcgacggcg
     1381 ccagcaaccg aatgagcgcg tctcgtccga tgagccagga gctgtggtcc acaacagagc
     1441 gcccggagct cacgatgaca gtcgccaata cgtcgacccg gttgcctggc gctgctgatg
     1501 ccgcggtccg ttccctgaag gcgtgcgcgc cgagcacgcc ggaaggcgca atcaccgcca
     1561 gtactattgc aatcgtccag acgtgacgtg ccacgccgcg tccctgcatt ccccattcaa
     1621 ccgcggccgc cgctccgacc agcaacagtg tgaacaggcc gatgtacgcg aacactgtgg
     1681 ggctcatttc gaatcctcct ccagccgctc atcgagaagc gcgcgcagcc gccgcagcgt
     1741 ggcgtcatcc agctcgcgat cggaaacgag ctgcgtgaga agtcgttccg gagatccgcg
     1801 gaaaaactgc ccgagcacgc ggtctatcgc gctcgagctt gcttcatcac gctcgatgag
     1861 cgcagcgtag cgatgcgcgc gcccctcgac ttcgcgcgcg acgtgaccct tctcctccag
     1921 cacgcgcaac agggtaagga tcgtggtata cgccgatccg tccccaagtg catcccgcac
     1981 ctctgcgacg gtactcggcc cgcgctccca cagcacggtc atgagctcga tctctcgtgg
     2041 ggtaagccgc tgcatccgcg tatcctccta ctaagagtct agtactatcg ccatagtaca
     2101 tacttccgga ccgcgcgtca agggcagcga tcgcgacagg atcgcgtggc agcccgaagt
     2161 aggggatcgg aacgactggg tacgttcagt gcaggacgaa tgtgaacgac tgttcgacaa
     2221 gctgccgtac ccgcataccg cgcgactcgg ccggccggaa ccgtgcgcgc gacagcgcgc
     2281 tctcgacagc agctacaaat agagggtttg ccgatccaac ggtgacgaag gatccggcct
     2341 ccacgcgtcc cgcgctgtcc acgacgaacc gcgccactac agttccctcc agcccgctcg
     2401 cgcgtagcgc ctcgggatac cgcggcgcga gcgtcccggt caatggttcg gcctgccgat
     2461 cgacctgctc ggacgacaga accgcgacgg aacccgcatc cggtccatgc atcccaccgt
     2521 cagcagtcac accgtcaccg aattcctgtc cgtgaaccac aggtgcgtgc acgccatcag
     2581 gatcgaatct gaatgtgtgc ccggtgaacg acggaacgac ggggtcgaca gtgggtgcag
     2641 cttcaaccca gtctcgattc ggcgatcgcg cgccggatgc ctggtgccgc acaggcggcg
     2701 cgatccgccg ttcgggtggg tagagtggaa gtgacacgac gtgcggccga tccggcgctc
     2761 gcaacgctgc atgcgcggtc gcgttgattg cagccaggat cagcgcgctg tgaagtgcga
     2821 tgctcgggat cgcgcccgct acagaactac gcctgtgtgc tccggattcc agcagatgcg
     2881 taaccacggg accacctcgc gaggtgagtg tctatcgcga agctacgccc gccgtattat
     2941 ccgatgatat cggacacgtt acggcgcgaa cagcaaatca ttaggcgttg atgacgaagc
     3001 catcgccggc gattgcgtct cgcgcccaac tcgtcgaatg cgcgctactt tatagtgcca
     3061 tgacgcatcc tcgcattcgc cccaccattc tgctcgcaac tctgttgctg ctcgcgatcc
     3121 cgcagatcgc atcgagccag tctccccacc gaacgcgcaa cgtcgttcta atagtctccg
     3181 atggtcttcg ctggcaggag atctttcagg gcgctgacag ccaactgatg aaccggaagt
     3241 acggccacgt cgaggacacg gcaggtctgc gccgggagtt catgcgcggc aacgcggact
     3301 ccgcgcgcac ggcgctcttc ccgttcctgt ggaacgttgt cgcaaaacag ggcgagatat
     3361 tcggtaatcg taccgagcag agtgacgccg acgtaaccaa cggattcaag ttctcgtatc
     3421 ccggctacaa cgagatgatc agcggtcatc ccgatccgcg catcaacagc aacaacgcgg
     3481 gaccgaaccc gaatctcacg gtattcgaat ggctcaacgc gcgccctggc ctggccggac
     3541 gtgtcgcggt attcggaacc tgggacgaat ttgcagacat cttcaatcgc gggcgtagcc
     3601 atctccccat ctgggccgcg ttcgatcagc cgcccgtggc aacgccaccg acggcgcgtg
     3661 attcgctgct cgtcgatctg tacggcacca cgacgcgtct ctggagcgat ctggcgtatg
     3721 actcgttcat gcaggcagag gtgcgcgggt atctcgcgcg ctcgcatccc cgcgtgatgt
     3781 tcgtcggata cggcgagact gatgaatggg cgcacatggg ccgatacgac atgacgctca
     3841 agtcggcgca tcagttcgac cagttcgtcg gcgatctgtg gagcgcgatg caacaggtgc
     3901 cgcagtatcg cgactcgacc acgttcatca tcacggcgga ccatggccga ggcagcggac
     3961 tcaccgcgtg gaccgaccac ggcgcggatg tgacaggtgc ggaagcgatc tggatcgcgg
     4021 tcatcggtcc cgacacaccg gcgcgcggtg agcgcgtgca cgtcgcgcgc gtcactcagt
     4081 cccagatcgc ggcgacaatc gcaagcctgc tcggcgagga ttattccgcg gccgttccga
     4141 ccgcagcacc accgcttccg gtgcgtcgat gatccgtgta tcgagcatcg ctgcgagcat
     4201 gtgaacatgc caaccgtgct ggcatgcata cttatgcgcg cacatagcat gtaaaaccat
     4261 cgtcgtgtcg ggggttaaat aacgaccgcg acagtgcgac atttcaagct agggatcaac
     4321 ctcagccgca cttcgcatga cagccgtcgc caacaacacc gaatccgccc ccgccacatc
     4381 ggctgattac atcgctctcg aagatgagtg gggtgcgcac aattaccacc cgctcgacat
     4441 cgtcatcgaa cgcgctgccg gaccgtgggt ctacgacgtt gacggcaagc gctacctcga
     4501 ctgcctgagc gcctactccg ccgtcaacca gggacactgt catccgcgca ttctcgcgac
     4561 gatggtggag caggcacatc gcgtcacgct cacttcgcgt gcgttccgca acgagcagct
     4621 gccgcgcttc tgcgaagaag tcgcgcagct ctgcggcatg gagatggtgc ttccgatgaa
     4681 cacgggcgcc gaagcggtcg agagcgcgat caaggcggcg cggcgctggg gatacgaaat
     4741 caagggaatc cccgcagatc gcgccgagat cgtcgtcttc gaaaacaact tccacggccg
     4801 caccaccacg atagtcggct tctcatcgga gccttcgtac cgggccggtt tcggaccatt
     4861 cactccggga ttcaggttga tcccgtacgg cgacatcgat gcgctcaagg ccgcgatcac
     4921 accgaacaca tgtgcggtgc tgatggagcc gatccagtgc gaggcaggca tcctgattcc
     4981 gccggacgga taccttcgcg cgacttcgga gttgtgccgc gagaacaacg tcctcttcat
     5041 ggccgatgag atccagaccg ggctcggacg cacgggccgc atgttcgcat gtgatcacga
     5101 aggcgtcaaa cccgacgttt acatactcgg caaggcgctg gcgggcggat tctatcccgt
     5161 ctccgcagtc gtatcgagcc gggaagtcct gggtgtcctc cgcgctggta cgcatggcag
     5221 caccttcggc ggcaatccgc ttggctgcgc ggtcgcgcgt acagctctgc gtgtcctcga
     5281 agaggagaac ctggtccagc gctcggctga tctgggtgcg tggttcaaga gccaggttgc
     5341 gtcgatcaag catccggaca tcaaatccgt gcgcggccgc ggcctgatgg tagggatcga
     5401 gctgcacgtt ccggcacggt cgtactgcga ggcgctcatg cggctcggga tgctgtgcaa
     5461 ggaaacgcat gaccacgtga tcagactttc accgccgctc gtcacgtcgc gcgaagatct
     5521 cgagtgggcg ctcgttcaac tgcgcacggt cttcgcgacg cgatagcgtt tcagttagcg
     5581 cgccgttctc gatcaagcag ccccgatcca tcgatcgggg ctgttcgctt tctggcctac
     5641 ttgtgttcga ccggaaccga cttctgctgg ttcgcgttct ccgtgccctt accctgaacc
     5701 tgcgcgttgc cgttaccgtc tccgctgccg atggcgatct tcttgggctg tggaagcgcg
     5761 gctttgggaa cgtgaacgtc gagcacgccg ttcgagaagt tcgcggtgat cttcgaatcg
     5821 tcgacgcctt tcggcaaccg gaacgaccgg gtgaaggagc cgtagctgcg ctcgaccagg
     5881 tgatactcgg tgccgtcgcc ctccttgcgt tccgccgtct tgtgcccgcg cacggtcagc
     5941 attccgttgt cggaagtcac ctcgacatcc tccggcttca cgcctggaag ctcgaccgat
     6001 agcgcgatct catggttgtc ctcgcgcacg tcgactggcg gcgcgagcgc agcggttggt
     6061 gtcgtgcgac tgagcgcgtc atcaaatagg cggttcatct ccctgcgtag accgaacaca
     6121 ggcagaggtg tcagtgaagt ctcgaaaagc atgttgctga cctccatttc aaagtcttga
     6181 ttgtccgagg cccagtgcct cttgcaataa ttcggcaatg gccgggccag tgaaggcggt
     6241 caatctggct taagagcagc tgtttaccgg ccacttcggc attttcgtct gaaaatttgg
     6301 caaacagagc tcgaaaaccg ttaccaattg atcggtcatc ctgtcctacg gtaggctgcc
     6361 agacgaccga ttcgccgagg aagtgacatt gtcaggtaaa gcacgttcgc atgttaccac
     6421 cgccatattg tccgaagatt ctgcatcatc cacactggtc ggagcactcg ccgacatagc
     6481 catctgtctt tccgacgcgc ggccgacgga gcttgtcgca caggatgtgc tcgagcgggc
     6541 ccgcgtgacg gtgggaacgc cagagctggc tgtgtggctg gacattggcg gcgagctcgt
     6601 ccgaacctgg ggcgccggcc cggaagaggc gtccgtggac gagctccgcg cggcgctggc
     6661 agccgcggca cctggcatgc ttgcgcgcga gatgagcttt ggtccgcgcc gggtgggcat
     6721 tctgctcgcg cgtgtcggaa ctgacgcagg ggaaggggaa ccggtggagc ggtttctgga
     6781 ggcgctcgct gcgctgctcg ccgcgttcgt cgctaactcc gagcgctccc ggcggctcga
     6841 aggcgatctg cagattcgca tgcgcgaggt ccaggagcag aagctcttca ccgaaaccgt
     6901 tctcgatctg ctcccgctgg gcctgtacgt gatcgaccgc gattacagga tcacggtatg
     6961 gaatcgcaag cgcgagacgg gaatgcaggg cgtctcgcgc gaggaggcga tcggtcgcac
     7021 gatcttcgag attctgcacc ggcagccgga ggacgttgtt cgtcgcgaat tcgatgaggt
     7081 gttcgcgaca ggcaagacgc agcagttcca gacggaatcg agcgcgagcg gcgcgctccg
     7141 cacctatcgc ctttccaaga tacctatccg cgatcacgcg ggaatcgtga cgcacatcat
     7201 cacgatcggt gaggacatca ccgattgggt ggaagcgcgc gaggctgtag cgcagaatga
     7261 aaagctcgcc gcgatcggcc gtctcgccgc cggtataatg catgagataa acaatccgct
     7321 cgcgacgatt gcggcgtgcg cggaaacgat ggcgctcgaa acgaagatca acgataatgc
     7381 gtctcaagct ggatcggaga gtacgcctga cagcgcgccg gaatatctca agatcatcga
     7441 gagcgaggtg cagcgctgca agcgcatcat cgacggattg ctcgatttca gccggccgcg
     7501 cgcgcaggaa aggcaatcgc tgcaggtgaa tactgtcgtc gagcgcgctc tattccttct
     7561 caaacatcac gctcgcttca agcagctcac cgttcaggcg cagctcggaa cggacctcgc
     7621 cacggtacac gcaagctccg agcagctgat tcaggtaatg atcgcgctgt tgatgaacgc
     7681 agccgatgcc atgccgcagt acggaaaggt tctcatccgt actcgtgtcg cgccgcgagg
     7741 cgcaaggcac gtcgtgatcg aggtgcagga cgaaggatcg gggatgacgc gcaatgagat
     7801 gtcgcgcatc ttcgagccat tctatacaac caaggaaccg ggccggggta caggactggg
     7861 tctcgctatc tgtcatggaa tcgtcgccga ccatggtggt cgcatcgagg tttccagcga
     7921 accgggcaag ggaactcgtt tcactatcct gttgccaatg gaggaagcat gagcgccgat
     7981 cggagtgccc caatccgtgt gctgatcgcc gaggatgagg agcaccttgg cgcaattctc
     8041 gaacacttcc tgcgaagccg cggctacgca gtcacgatgt gtcgcgacgg ccgtgcggct
     8101 ctgacggagc ttcatgctgt tccgtacgac gtcgcgctga tcgacatagt gatgcccgag
     8161 atggatgggc tcgaagtgct gcgacatctg cagaacgagc ccgcaccgcc ggaagtgatc
     8221 atcatcaccg gcaacggcac catcgatacc gcgataactg cgatcaagct cggcgcgtat
     8281 gactacatct ccaagccgta cagaatggcg gagatcgatg tgatggtacg gcgtgcgtgg
     8341 gaaaagcgcg agctgggcaa ggcgaatgtc atgctgcgtg cacgtacacg cgagctgccg
     8401 tcggagatga gcagcagaaa tccgttgatg cgcgaagtgc tggacaggct gccggagctt
     8461 gcgcagtcga acgcaccggt ggtcatcacc ggcgaacgcg gcgttggcaa gagctacgtc
     8521 gcgcggcatc tgcatgtgtt gtcaggacgc gtgcgcgatt cgttgatcga agtgcgccag
     8581 ggtcgcggcg ctctcgcgga cgcagctgat ctcgccggac gacagggagt tccatccggt
     8641 ggcgcaatgc cgaccggcgc atttctcgca gccgatcgcg gaacgacagt catcgacatc
     8701 gcggccctcg gcgaggaggc gcgcgcagtg ctgcatgatg caatcgtttc cggcacgttc
     8761 acccgcatcg gtggatcgca ctcgctgccg cttaccacgc gtctcatcat atgcgtcgac
     8821 gatcccgcgg acggcttcgg ttcctcgatc gccgccgagc atctcgcgat tccaccgctc
     8881 cggacgcggc atgaagatct tgctccgctc atcacggagc tgctggcgga gcagactggc
     8941 cccgtccaca ccatcgcgcc cgacgcactg gaggtgctcg cctcgtactc gtggccgggc
     9001 aatgttcgcg agctcggcgt cgtcctggcc cgttgtgcgc tgctcgcccc caaggaaaac
     9061 atcgcggctg gcgatctccg gatgttgctg tcaaccggaa cagtcggcgt cgagggacgg
     9121 ggtgcgcccc tgtcggacct ggaaaagctg catattgaag caatgctagt ccgatttcat
     9181 tggcaccagg gccgggccgc cgaggcgctc ggtatctcga ccaagacgct gtatcgcaaa
     9241 atgcgcgagt tcggctttcg ccgcccgcgc aagcgcaaat tcgcacggac ccggcctgag
     9301 gaatgaagat cctcgttatc gaggacgatc cgaccgtcgg gcagttcgtc aagcgagggt
     9361 tggaggaaca gcgctggaca gttgacctca cggagaacgg aaatgatggc gagacgctcg
     9421 ctacggcggg cgactacgac ctggtcattc tcgacatgcg tcttccggga aagtcaggga
     9481 tggaggtgtt gcacgatctc cgcgcgcgca acttccagcg tcccgtactt gttctcaccg
     9541 cacaggacgc ggtagatgca aaggtgcaga ctttgcgcgc cggtgctgat gactatgtga
     9601 ccaagccgtt cgcattcgag gagctgctcg cgcgcgtgga ggcactggcg cgccggccgc
     9661 gtgcgatggc gtcgccggta atgcaggtgg ccgatctcac gctcgacgtc gacacgcggg
     9721 aggtgcggcg tgccggcaat ctcatcgagc ttacgcccaa ggaatacacc gtactcgagt
     9781 acctgatgcg gcaccaggga cgcgtgatga gccggacgct gatcaccgaa tacgcctggg
     9841 gatatcactt cgatccggga acgaacatcg tggacgtcgt gatcaaccac cttcgcaaga
     9901 agatcgacgc cgatcacgag aagaagctga tctcgaccgt gcgcggcgtc gggtacgttg
     9961 tgcgcggatg attccagcgc ggttgaagct gacgttcgtt ttcgccggtg cgatggtcgt
    10021 gaccggcgct gcactgggaa tcgctgtttc cgcttcacgt accgctggcg cctatagcgc
    10081 gattgcgcgc gaagctctgg cagacggtga tctcgcgatg cggatcatcg atcaggcgtc
    10141 aaaggaccgg gagccggttg tcgtacggga ttcgttgggg gcggagcaga tcgcgcgctc
    10201 cgtttccgcg cggctggaag tgataccagg ctatctggtg atcgtggggc gaaaggcaaa
    10261 cgtcgtattc acatcgttcg acacgcgtga cctttcggat gaggactgga cgacgctgca
    10321 gcgcgggatc gccgatcttc ccgacgacgg gccggcgggg gtgatcagcg tcggacagga
    10381 acggattctg ttcgttgctc acgcaataca cgacagtacc acgaagctga gtcgcgtggt
    10441 cgcgggcgtc agggtgcgcg gagcgcagag tctgccaacc gagctcgtca cgacgatctt
    10501 cgcggtcgtc ccgctcataa tcgcgcttgc gtcgtggggc atgtggctga tgctcggcgg
    10561 cacgttccgc aggatagagc gcgtgcgacg cggcgttgcc gacatcacgg acggccgcag
    10621 tctgcacagg cgcctgtcgg atgacgaggc gagtccggaa attgccgcgc tgatcaatac
    10681 gttgaactca atgatcgcac ggctcgagac gtcgttcgcc gcgttgcgtc gctttaccgc
    10741 cgatgcgagt cacgagctca agacgccgct tgcggtactc cgcgccgacg tcgagcgcgc
    10801 gatgagcgcg acgacacgca aggacgatcg tctcgtcgcg ctcgaagagg cactgcacga
    10861 gaccacgcgc atggcggatc tcgtggaaag tctgctcaca cttgcgcgcg ccgatgaagg
    10921 aagattcgat ctgtaccgcg agcgcgtcga tctgagtgag ctcacgcagg aagtgtatga
    10981 aactgcggtc atactgggcg agggcgcagg cgtcaccgtg aatcttccgt tcacgacgga
    11041 ggtcacgata gcaggagatc gcactcggtt gcgacaactc tttctcaacc tcgtgaccaa
    11101 cgctatcaag tacacgccgc gcggtgggcg cgtcgacatc ggactcggac gtcatcccaa
    11161 caatgtcacg ttcgccgtgc gcgataccgg agccggaatc gcggcggcgg atctgccgca
    11221 tgtgttcgag cgattctggc gtgctgatcg tgcgcgatcg cgcacggcgg agcggggcgg
    11281 attcggcctg ggactcgcga tcagtcagtg gatcgcacaa gcgcacggcg gcacgctcac
    11341 ggtgcagtcc cggctcggca agggatcgtt gtttacgctc acgcttccac tcgatgcggc
    11401 cgaccatgcg gatggcgatg acgcggcgtt gcaggaggag tgatatcgtc gccatgcgac
    11461 tgcgacgcgg tcgttaaagc ggtcaaaatg ccgcagcagt taatcttccg ttaatgtttt
    11521 gaattaactg aagcttaatc tcccggccat tccggcttaa ttgtgcgcca gtattcttct
    11581 gtcaggtcat tctgaggagc ttgctgccgc aatgttcaac cagctaatcg agtccaagcg
    11641 caaaaagaaa aggagcccgg gaaccactgc gttcagcatc gggctgcacg cgggactcat
    11701 cgggctcgcg gtctgggcga cggctaacgc cgccatcaag aacgagaagc cgaaggcgga
    11761 aaagatcgaa ttcgtccagg tgaagaagga cgagccgcct ccgcccaaga aagaggcacc
    11821 gccgccgcca aaggccacgg ttgcgccgcc accgcccaag ggcttccagg tcccgactgc
    11881 gccgccgatc gtcccggtga agatcccgga catcgacctt aacaagaagg ccaccaatgt
    11941 caacgacttc agcggcaagg gcgtcgaggg tggtgttgcc aacggtatcg taggcggcaa
    12001 gggaccggtg tcgaacaccg agacgtactt ctcgttccag gtcgagaagc cggccgcgat
    12061 ggcctccgga acggtgacgc cttcgtatcc cgagacgctt cgcagcgccg gtatcgaggg
    12121 tgaggtcgat gcggagttca ccgtggatac cacaggccgc gtggatcagg ccgcggggat
    12181 caagatcaca aaagctacca acgatctgtt cgccgccgcc gtcaagtccg cactgccgcg
    12241 catgaagttc tatcctgccg agatcggcgg acacaaggtc agacagctcg tgcagcaacc
    12301 gttcacgttc acgatcactc attaaccgtc ccaccattcc acggagtaac gaacaatgca
    12361 tctatcgctg attgaccttt ggggccagat ggccggtttc gctcgcggaa tcgtttatgt
    12421 gctcgcgatc atgtcgatct ggaccctgtc aatttcgatc aagaaatggt gggagctgaa
    12481 gaccgcacag aacgagacgc gcaagttcgc gcccgagttc tcccagtttc ttgaagaaga
    12541 caatctcgtc gaggccgcaa acctctccga gcgctacaag aagtcgcacg tcgctcgcgt
    12601 tctcgccggt gcactctccg agacccgcgc gctggttcag gatggttccg taacgatcgc
    12661 cgacatcaac tccgcagagc gcgcgatcga gcgcgagatg ctgatgacga tcaccgatct
    12721 caagcgcggt ctgggcgtgc tcgcgacaag cggtgcaacg gcgccgttcg tcggactgct
    12781 cggaacgacg atgggtatca tcaacgcctt cacgggcatg gcagtttccg gatcgggcgg
    12841 tctgtccgcg atctccggcg gtatttccga ggcacttatc acgaccgctc tcggtctgct
    12901 cgtcgcaatt ccggcagtgt ggctcttcaa ctacttccag acgaaggtcg acaatctcac
    12961 cgctgagatg acctacacgt ccaaggaaat gatcgactat ctgatcaaga acgtctcggg
    13021 cgagttcggc cgcagccgct tcacgcgcga gttcaacacc acggcgaccg cgggcaacgc
    13081 cccgatctcc aagtaattgt agggcgcgga tacatccgcg cctgacgtag ggccggcgcc
    13141 ccgtccggca gtaaaagacg gggcgcggtt ccacactttt cgagggattt gtatttatgg
    13201 caatgtcaac atcgggcggg aacgcggttc gcgcggatcc aaatgtgact ccgatgatcg
    13261 acgtcatgct cgttctgctg atcatcttca tggtcatcat tccgacgctg gtgtcgggcg
    13321 tcaacgcgca gccgccagcc ggccagaacc ttgcgccgca cccgcagcag gaccaggatc
    13381 agctgcttgg tatcgacaat caggggcagt actacctgaa tcgcagcgcg atcccgaacg
    13441 gatcgctgca aaccgcgctg gccgacatct acagcaagcg caccgaggac aagattctgt
    13501 acgtcaaggc ggacaagaat ctcgactacg gcaagatcct cgacgcgctc gacgtggcgg
    13561 cgaaggctgg cgttcgcatg accgccatgg ttaccgatca ggcgcctggc actcactccg
    13621 tgattccgag tgacaacatc gaggcaacca gcgccggtac cggcaccgga gggtcgaagt
    13681 aatggcaatg tcaacaggtg gtggtcgtgg cggcttcacg tccgagccga acctcacccc
    13741 aatgatcgac gtgctgctgg tgcttctcat catcttcatg gtgattgtgc cgacggcgcg
    13801 aaaggcgctc gacgtacagc ttccggatcc gaatgtgcag ccgacgactt cgcccaacac
    13861 ggatcagatc gtgctcgaag ttgggaagga tggctcgtac ctcatcaaca agcagccagt
    13921 tcctggtgga gcgagcggcc tgagccagat gatccacaac acgttcgaca agcggcctga
    13981 caagatcatg ttcgtgaagg gtgatccggc cgccaagtat cagcagatca ttcaggcgat
    14041 ggacatcgca cgcggctccg gcgtccttgt catcggcgtg acgccaaagt ctacgcagta
    14101 aggtttcacg tgtatcgtcc gcccgttggt attccgcgac gggagcaaaa gcgctggcaa
    14161 gggtggttat tctccctgct ggcgcatttg cttttgttgc tgtttctgct gcgtcccgct
    14221 ctggactcgg ggatcgacta cggtcaccgc gagggagcag gcggcgcggg gcccgcgggc
    14281 ggcggtggcg gcggcctggg caacaatgcc gcaccgaagt tgcggtttgt gcagatcgca
    14341 ccacaggccg cagctcccgc agcaacacaa acaccgccga ccaagacagc gatcaagcca
    14401 gtgccgccga tcgttccgcc gattccaacc cctcctccgc caaagccggt accggtggcg
    14461 ccggtaacac ctccgccgac tgctgcagct acaactgcga caacgtctgc cgcgacatcg
    14521 acagcgggcg cgggcaacgg tatcggaaag aacggcggcg caggtgctgg tcccggtagt
    14581 ggcgggggcg taggctcggg cgaagggcca ggcaagggaa gcggtgtcgg ccccggtacc
    14641 ggcggcggcg cggcaaagga ctatccgccg acactcaagc aattcgtgct tccgccactg
    14701 ccgactccag cgagcgtacg cgggttcaag ctcaccgcct ggttcgacgt cgattcgacg
    14761 ggcaaggcta ccctgctacg cttcactccg acgcccgatc gcggctacaa tgaccgcgtg
    14821 cgtgaaaccc tgctggcgct ccggttccgg ccggctgtcc gcgccgatgg tgtcgcaatc
    14881 cgtgacacgg tggacattca ggttctcttc tgatccatct cctctcaaca tttttgtgac
    14941 caaatatgca aagtagtcaa ttttgcgtag tactttgttg cgcaaagcca tgcgcgagat
    15001 cacgtcttcg tgcatgtaac gggagtctag cctctctctg cgcgcggcgt tacattcacg
    15061 cgaattttcc gctctgcgca tacataaatg cagagcgccg acccggagcc ggagggcatg
    15121 ggtgaacaat aaaaccagcc gttccgctac cggaacggat acggccacgg ccgaatccaa
    15181 cttcgtaaag gcgatgaccc tcaccgacgc cacgatgctc gtggcgggaa cgatgatcgg
    15241 gtccggcatc ttcatcgtct catcgacgat cgcaggattg gtccagactc cgttctggtt
    15301 gatctcggtc tgggtgctta ccggtgtgat cacgctcctc ggagcgctcg cttacggtga
    15361 gcttgctgca atgtttccgc gcgccggcgg acagtacgtc tttcttcgtg aatccatggg
    15421 tccagtcgta ggcttcctct acggctggac tcttttcgtt gtcattcaaa ccggtaccgt
    15481 cgcagctgtc gccgtcgcct ttggaaagtt cctaggcgtg ctctggccag cgatgacgcc
    15541 ggatctgtat ccgtggttcc cccacttttc cttcacgctc accggcgcgc cggtgagcgt
    15601 agggctctcg cctcaacgcg tcgcggcact catcaccgtg tgggtgctca cctggatcaa
    15661 cctccgcggc gttcgccagg gcaagctggt ccagacgacg ttgacgattg caaaggtcgg
    15721 ggtgcttgcg ctgctggtga ttctgggact cacggtcggc cgcaatgcca ccgcgatcat
    15781 ggcgaacttc ggcgccggca acttcgcgcc gcacgtggac atcaacggcg cgttcattct
    15841 cgcgttcggt gctgcgatgg tcgggtcgct gttctcgagt gattcatgga acaacgtcac
    15901 gtttgcagcc gccgaggttc agaatccgaa acggaatctg ccgctcgcgc tggcgctcgg
    15961 tgcgggctcc gtgacggtgc tctacatact cgccaacttc gcgtacctga ccgtgctccc
    16021 gatgcacggg acagcggcgg gaacgagcgt ccttgcacgc ggcatccagt tcgcaacgca
    16081 gcagcgggtc ggaacggcga cggctgagat gattttcggt gcggcgggtg gaagcatcgt
    16141 tgccgcggca atcctggtat cgactttcgg ctgtaacaac ggactgattc tttcgggcgc
    16201 gcgcgtgtac tgggcaatgg ctcgcgacgg gctctttttc tcgcgcgccg gaaagctcag
    16261 cgcacgtgag gttccggcat tcggcctcgt aatccaggca atctggacca gcttgctctg
    16321 tctcaccgga acgtacgacc agctgctcaa ttacgtcatc ttcgcgcagc tgcttttcta
    16381 cgcagcaact accacgggtc tgttcgtatt acgtaggact cgtccggacg ccgagcggcc
    16441 gtacaaggcc gttggctatc ctgtgcttcc ggggctgtac atc
//
LOCUS       DATIMD010000139         5445 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2651255, whole genome shotgun sequence.
ACCESSION   DATIMD010000139 DATIMD010000000
VERSION     DATIMD010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5445
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2651255"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1087)
                     /locus_tag="VLI40_03180"
     CDS             complement(<1..1087)
                     /locus_tag="VLI40_03180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HSU96202.1"
                     /translation="MALPTIARGQDLRCGAGDIEVRGLDFNGNHEFTDAELANAIVTT
                     PSAWARRYLDLPFSARRCLDEQEFGNDRLRLILFYRRRGFPAVTVDTGRIAAGRSGIR
                     AEFNIHEGRATVLRSLVIKGLDSLPNASEVKAGIPIAPGQRFDRTKIDAAIDLMTRRL
                     RNAGYPAVAAHNSYGTTDSALVAFDTLTITPGTRTRFGGVDIAVTPARNKKQHISNRT
                     VRRIIGIDSGTLFREQALIDAQRALYQTDAYTHVAISLDSAQGSRSGVDSIAPLDISL
                     AENTMHAARLGGGYGTLDCFRATGELDDYNFLNGARHLTIQGRVSKIGIGKPLNGAPD
                     LCPQAKADPYSEQLNYYLGATLRQPVFF"
     gene            1194..2825
                     /locus_tag="VLI40_03185"
     CDS             1194..2825
                     /locus_tag="VLI40_03185"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSU96203.1"
                     /translation="MSTVAHSRGFRPSRRAILGALAALSGLAALSGLLACSAPGVPDR
                     RTLIDSRDNYDPRSLDPALSTDVPTGRAVSYVFDGLTRFTPKAAVVPDLATSWELAPD
                     GITYTFHLRNGVRFHDGTSFSASDVRHSWERVLDPATRGGRGWPLYPIRGAQDFAAGK
                     ASSIAGLKVVDDSTIRITLTEPFAIFPKMLAMPATAIVPKVTPPDFGEHPIGTGPWKF
                     VAWHHDDYLLFARNTQYHEGAPLADSLEARIIPELSTAEAEFQGGNVDVLQVPAQESP
                     SWESNEETRPLLQSAPSLRLIYGAINTTRGPLRDVRVRQAINLAVDRGMILRRLMGGR
                     GTLAAGVIPPSLDGFNPSLAAYPYDTARAHALLREAGYPSGIDIELWTSQSEQFPRIA
                     QTIQAYLAQVGIRVKIVQRDASSMREAARNGKTDIALKDWYADYPDAENFLYPLLHSA
                     NRGVGGNVSFFSNATFDSVVSKARREPDDKKRFALYREADSLAHEQAPMLFMFFYTEL
                     YAVQPWLKGFTVPSIFTGERWTMAHIERPPKTAPK"
     gene            2822..3739
                     /locus_tag="VLI40_03190"
     CDS             2822..3739
                     /locus_tag="VLI40_03190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU96204.1"
                     /translation="MTSYIIRRMLLAIPTLFGVLVVTFLLLYIAPGDPVQEMVGERAD
                     SATIARLRKELRLDEPVLSQFTHYAGGILRGDLGTSYITRRPILSDVLERFPKTLLLA
                     GTAMLFASITGILIGVLSAQHPGGWFDRISLGGAYLGISFPVYWVGLLLILLFAVTLH
                     WLPPSGYGGIRHLILPALALGTRSVAFLARVTRSAMLDVLNSDFVRTARAKGLSERAV
                     VLKHGLRNALIPVITVLGLDFGYYLTGSILTETIFSWPGLGRYVVNAISRRDLPAIQG
                     SVLFLSVIFVLVNLLTDLAYAKADKRVNL"
     gene            complement(4005..5021)
                     /locus_tag="VLI40_03195"
     CDS             complement(4005..5021)
                     /locus_tag="VLI40_03195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSU96205.1"
                     /translation="MEHEIKDVTILGAGPTGLFGLFYCGMRGASAQVVDALSQAGGQL
                     TALYPEKYIFDVAGFPKILAKDLVRSLEGQAAQFGEPVHLNQHVTGLEEHDGHFVLVT
                     STDRFPTKSLVLAAGIGAFSPRRLPQAVAEPWYGKGIQDRVIDPEQFRGKRVIIIGGG
                     DSAFDWAQQLRGTAEAISLVHRSDRFRAHAATVADVLASVHTGHTKVFTFHELHDIHS
                     AGEYFDAVTLRNVKSKELERVECDVILPMLGFVSDLGALNEWGLQLVNDEIVVNSQME
                     TGHSGIYAAGDICTYPGKLKLIATGFAEAATAVNQAVHWIYPDKKVAPGHSSNMAVFG
                     QKDD"
     gene            5049..>5445
                     /locus_tag="VLI40_03200"
     CDS             5049..>5445
                     /locus_tag="VLI40_03200"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HSU96206.1"
                     /translation="MKIYTKTGDAGTTGLFGGGRVPKDDARVDAYGDVDELNAVLGAA
                     RATGPMPRVDEVLVSVQRDLFAIGALLATPDIEKMHAHLTKARIDEARIEELERAIDA
                     CDNELEPLKAFIIPGGTPKAAALHVARTVC"
BASE COUNT         1012 a         1703 c         1669 g         1061 t
ORIGIN      
        1 cgaagaatac cggctgccgc aatgtggcgc cgaggtagta gttgagctgc tcgctgtagg
       61 gatccgcctt tgcctgcgga cacagatccg gtgcgccgtt gagcggcttg ccaatcccga
      121 tcttggagac gcggccctgg atggtcaggt ggcgagcgcc attcaggaag ttgtaatcgt
      181 cgagctcacc cgtggcgcgg aaacaatcca gcgttccgta gccgccgccc agccgagcgg
      241 cgtgcatggt gttctcggcg agcgagatgt cgagcggtgc gatcgaatcg acgccagatc
      301 gcgagccctg cgcactgtcc agactgatcg cgacgtgggt gtacgcatcc gtctgataca
      361 gcgcgcgctg cgcgtcgatc aacgcctgct cgcgaaagag ggttccggag tcgatgccga
      421 ttatccgtcg caccgtccgg ttcgaaatgt gctgcttctt gttgcgcgcg ggagttacgg
      481 cgatgtccac gccaccaaag cgtgtgcgcg ttccaggcgt gatcgtgagc gtgtcaaatg
      541 ctaccagagc gctgtcggtg gtgccgtagc tgttgtgcgc agcaacggcg ggatagcccg
      601 cgtttcgcag ccgccgagtc atgaggtcga tcgcggcgtc gattttcgtc cggtcaaagc
      661 gctggcccgg tgcgatcgga atgccggcct tcacctcgct cgcgttgggt aatgaatcga
      721 gtcccttgat gacgagggag cgcagcaccg tcgcgcgtcc ttcatgaatg ttgaactcgg
      781 cgcgaatgcc ggagcggccg gcggcgatac gtcccgtatc gaccgtcaca gccggaaagc
      841 cccgccgtcg gtagaagaga atcagacgca ggcgatcgtt tccgaactcc tgttcgtcca
      901 gacatctgcg cgcggagaac ggaagatcga ggtagcgccg agcccacgcg gacggtgtcg
      961 taacgatggc gttagccagt tcggcgtccg tgaattcgtg atttccattg aaatccagcc
     1021 cacgcacttc gatgtcgccc gcaccgcaac gaaggtcctg tcccctggcg atggttggca
     1081 gagccaagca agcggccagt acggtggccg cggtgattat cctcttgatg atgtccgcgg
     1141 tcacaattga cgctctaatg atagcccggt aagttctcgc ctcgcaccct ataatgtcaa
     1201 cagtcgccca ctcgcgagga tttcgcccgt cgcgccgcgc catcctcggc gcccttgcag
     1261 ctctgtccgg actggccgcg ttatccggcc tcctcgcctg cagcgccccc ggcgtgccgg
     1321 accgccgcac gctgatcgac tctcgtgaca actacgaccc gagatctctc gatccggccc
     1381 tctcaacgga cgtcccgacc ggacgggccg tgtcctacgt gttcgacgga ctcacgcgct
     1441 tcacgccgaa agctgccgtg gtaccggatc tggcaacgtc gtgggagctg gctccggatg
     1501 ggataaccta cacgttccat ctgcggaacg gcgttcgttt ccatgacggt accagcttct
     1561 ctgccagcga cgtcaggcac tcgtgggaac gtgtgctcga tcccgcgacc aggggtggac
     1621 gcggctggcc gctgtatccg atccgcggtg cgcaggactt cgccgccgga aaggcgtcga
     1681 gcatcgcggg gctgaaggtg gtggacgaca gcacgattcg aatcacgctt acggaaccgt
     1741 tcgcgatctt tcccaagatg ctcgcgatgc ccgcgaccgc gatcgtaccg aaagtgactc
     1801 cgcccgactt cggggagcat ccgatcggca ccggaccatg gaagttcgtc gcgtggcatc
     1861 atgatgatta tctgctcttc gcgcgcaata cgcagtacca cgagggcgca ccgctcgccg
     1921 actcgctcga agcacgcatc atcccggaat tgagcaccgc cgaagcggag tttcagggcg
     1981 gcaacgtgga cgtgctgcag gttccggcgc aggagtcgcc gtcctgggaa tccaacgagg
     2041 aaacgcggcc gctgctgcag tcggcgccat cgctgcgatt gatctacggc gccatcaata
     2101 cgaccagagg tccactgcgc gacgtgcgag tgcgacaggc aatcaatctg gccgtcgatc
     2161 gcggaatgat tctgagacga ttgatgggcg gccgcggcac gctcgccgcg ggtgtgattc
     2221 cgccatcgct cgacggcttc aatccgtcac tcgctgcgta tccgtacgac accgcgcgag
     2281 cgcacgcact gctcagggag gccggatatc ccagcggaat cgacatcgaa ttgtggacat
     2341 cacagagcga gcaatttcca cgcatcgcgc agacgattca ggcttatctc gcgcaggtcg
     2401 gcattcgtgt gaagatcgtt cagcgcgacg cctcgtcgat gcgcgaagcc gcgcgcaacg
     2461 gcaagaccga catcgcgctc aaggactggt atgcggatta tccggacgcg gagaattttc
     2521 tctatcccct gttgcatagc gccaaccgcg gcgtcggcgg caacgtatcg ttcttcagca
     2581 acgcgacgtt cgacagcgtc gtttcgaaag cgcgacgcga gccggacgat aaaaagcgct
     2641 tcgcgctgta ccgcgaggcg gattcgcttg cgcatgagca ggcaccgatg ttgttcatgt
     2701 tcttctatac tgagctgtac gcggtgcaac cctggctcaa gggattcacg gtgccatcga
     2761 tcttcaccgg tgagcgatgg accatggcgc acatcgagcg gccaccgaag acggcaccaa
     2821 agtgacgtca tacatcattc gccgcatgct gctcgcgata ccgacgctgt tcggcgtgct
     2881 ggtcgtcacc tttctgctgc tgtacatcgc accgggcgat ccggtgcagg agatggtggg
     2941 tgagcgcgcc gattctgcaa ccatagcgcg gctgcgcaag gagctacggc tggatgaacc
     3001 ggtgctgtca cagttcactc actacgccgg cggcatcctt cgcggcgacc tcggcacctc
     3061 gtacatcacg cgcagaccaa ttctgagcga tgtgctggag cgcttcccga aaacactgct
     3121 gctcgccggc accgcgatgc tgttcgcgtc gataaccggg attctcatcg gcgtgttgag
     3181 cgcgcaacat cccggtggct ggttcgaccg aatatcgctc ggcggcgcct atcttggcat
     3241 ctccttcccg gtgtactggg tgggattgct tctgattctg ctgttcgccg tgacactgca
     3301 ctggcttccg ccgtcgggat acggagggat tcgacatctg attcttcccg ctctcgcact
     3361 cggcacgcgc tcggtcgcat ttctcgcgcg cgttacgcgt tcggcgatgc tcgacgttct
     3421 gaacagcgat ttcgttcgca ccgcgagagc gaagggactg agcgagcggg cggtggtcct
     3481 caagcacgga ttgcggaatg cattgattcc ggtgatcacg gtgctcggac tcgacttcgg
     3541 ctattatctc accggcagca tactcacgga gaccatcttc agctggcccg ggctcggccg
     3601 ctacgtcgtc aacgccatct cccggcgcga ccttccggca attcagggga gcgtactgtt
     3661 tctgagtgtg atcttcgttc tcgtcaatct tctaaccgac ctcgcatacg caaaggcgga
     3721 taagcgagtg aatctctgac ggacaggcga ccgaacatct cgaatggcag gaagctgcta
     3781 cagacgtcag tcgagatcaa gcgccacaca aagggcgtcc ttcagttcac cgagcctcgg
     3841 tgctgatagc gagccgacgt agtgcgtcag cgcggatttt ggcacgagga gaagttggtc
     3901 gcagttcacg accgcttcgg atctttgcca gacgcgggtg acacgcggta gatctcgcct
     3961 cgcgccagac tcactctggc caggactgga ggtcaagcag gccatcagtc gtccttctgc
     4021 ccgaacaccg ccatgttcga gctgtgaccc ggcgcgacct tcttgtccgg gtaaatccag
     4081 tgcaccgcct ggttcaccgc cgtcgctgcc tctgcgaatc cggtcgcaat cagcttgagc
     4141 tttccgggat aggtgcagat gtcgccggcc gcgtagatac cgctgtgtcc cgtttccatc
     4201 tgactgttca cgacgatctc gtcgttcacc agctgtaatc cccactcgtt cagcgcgccc
     4261 agatcgctca cgaagccgag catcgggaga atcacatcgc actcgacgcg ctccagctcc
     4321 ttggacttca cgttgcgaag cgtgacggcg tcgaagtact cgcccgccga gtggatgtcg
     4381 tgcagctcgt ggaaggtgaa gaccttggtg tgaccggtgt gcacggaggc gaggacgtcg
     4441 gcgacagtcg ctgcatgggc gcgaaagcga tcgctgcggt gaaccagtga gatggcttcc
     4501 gccgttccgc gcagctgctg cgcccagtcg aacgccgagt caccgccgcc gatgatgatc
     4561 acccgcttgc cgcgaaattg ctcggggtcg atgacgcgat cctgaattcc cttcccgtac
     4621 cacggctcgg cgaccgcctg cggcagccgc cgtggagaga acgctccgat gcctgccgcg
     4681 agcaccagcg atttcgtcgg gaaacgatcg gtactggtga cgagcacaaa gtggccgtcg
     4741 tgctcttcga ggccggtcac atgctgattg agatggactg gctccccgaa ctgcgccgcc
     4801 tgaccttcga gcgatcgtac caggtccttc gccagtatct tggggaaacc ggccacgtca
     4861 aagatgtatt tctcaggata aagggccgtc aattgcccgc cggcctgcga tagcgcgtcc
     4921 acgacctggg cgctcgcacc gcgcattccg cagtagaata ggccaaaaag tccggttggg
     4981 ccggcaccta atatcgttac gtctttgatc tcgtgctcca tagtggcgaa atttacccgg
     5041 atatgaccat gaagatctac acgaagaccg gcgacgctgg cacgaccggt ctctttggcg
     5101 gcggcagagt gccgaaggac gacgcacgtg tcgacgccta tggcgacgtc gacgaattga
     5161 atgccgttct gggcgctgcc cgcgcgaccg gcccgatgcc gcgagtcgat gaagtgctgg
     5221 tttcggtgca gcgcgatctc ttcgcgatcg gcgccctgct cgcgacaccg gacatcgaaa
     5281 agatgcacgc gcacctcaca aaggcgcgca tcgacgaggc gcgaatcgaa gagctcgagc
     5341 gtgcaatcga cgcctgcgac aacgagctgg aaccactcaa ggcgttcatc atccctggcg
     5401 gaactccaaa ggccgccgct ctacatgtag cgcgaactgt ctgtc
//
LOCUS       DATIMD010000140         4900 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1209591, whole genome shotgun sequence.
ACCESSION   DATIMD010000140 DATIMD010000000
VERSION     DATIMD010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4900
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1209591"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..307
                     /gene="flgA"
                     /locus_tag="VLI40_03205"
     CDS             <1..307
                     /gene="flgA"
                     /locus_tag="VLI40_03205"
                     /inference="COORDINATES: protein motif:HMM:TIGR03170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HSU96207.1"
                     /translation="WTDTTLTDGSTPSAAAAVAPGWVARRVIRAGEILQEPGVAKPDL
                     VNAGDAVDVIYSVPGVAIRMHGTAVGRGSKGDEVYVRLDNRRRLRGIIAGPNTVRVM"
     gene            307..1041
                     /locus_tag="VLI40_03210"
     CDS             307..1041
                     /locus_tag="VLI40_03210"
                     /inference="COORDINATES: protein motif:HMM:NF014195.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009427 - bacterial-type flagellum basal
                     body, distal rod, L ring [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HSU96208.1"
                     /translation="MGDATKIRFTRALAAIASAAFASAIFASATIAGASVAGAQAGAP
                     APSTAGRTAAQTPGGAQTAAQSAQSTPPLTSTAVAGRQSWLSDRRDYHLGDIVTVLVD
                     EYTLTSLDKEVNATENRQRGLGFGINTPTSNKNYGINSNNNNQSQNSGLDARTNRLTT
                     EMSARVVAIAPNGVMQLKGNKIIKVEESKVNLILTGWVRVQDVAPDNSIQSFRMADAD
                     LDYQAEGPLGKAKSGIIGKLLGAFWP"
     gene            1038..2126
                     /locus_tag="VLI40_03215"
     CDS             1038..2126
                     /locus_tag="VLI40_03215"
                     /inference="COORDINATES: protein motif:HMM:NF014206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HSU96209.1"
                     /translation="MRRILETVTAALGCFALLAFQAGAQSARIRDITMADGSMPVRLL
                     GYGIVVGLDGTGDRGVGGQQGGQTVQSVANLLRRFDIEIPAEVLRTRNAAAVLVTAEV
                     SPYLRPGGKFDITISSLGDARSLRGGTLWMTPLVTDAGAQAVATGQGSIVISDGNINS
                     RDFNTVETSGRIPSGGLLEGSVTTASFANSSRLLLKEPDIGTATKIVAAINQAIGANT
                     AKVEDPGSVELTLPATGDRATTIVKIQDLKVTPDRSNKLVIDGRDGTVVAGGDMTVGE
                     AVVSHGGITLTIGGPAAAGPAVAAAPPSGPEPAGGVGNQAVRVATGASVQAVASALQA
                     VQTSPSEIAAIFESLREVGALSAEVTIR"
     gene            2123..2479
                     /locus_tag="VLI40_03220"
     CDS             2123..2479
                     /locus_tag="VLI40_03220"
                     /inference="COORDINATES: protein motif:HMM:NF021638.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod-binding protein"
                     /protein_id="HSU96210.1"
                     /translation="MTSIGGPSPVRNSTPADPVATAQDAKLHKVSSQLEGVFVQEMYK
                     SMRSTVPSGGLFDGGSGEEMFTGMLDEHIAADTPQHWKHGLSESIYRQLRDKIHAQNP
                     SLPPDSSLVTSTGVDK"
     gene            2547..3107
                     /gene="flgN"
                     /locus_tag="VLI40_03225"
     CDS             2547..3107
                     /gene="flgN"
                     /locus_tag="VLI40_03225"
                     /inference="COORDINATES: protein motif:HMM:NF016985.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FlgN"
                     /protein_id="HSU96211.1"
                     /translation="MMQTYQEHSPIQEGSFRTSTAPVSPAALDALCDALLSERKLIDD
                     LTEVVLRQRSAVAIDDLQAVDDSVFATHRLLLTLGEARKRRRSLNAMVGCKEETGVKH
                     LEDALGKWMTPRLRQAREELQIAAGRLSREIGINRRILREAISNSDSFVRAVVGAPTD
                     ATQQGYGSATPSAYTRSDAIAFSRTA"
     gene            3117..4553
                     /gene="flgK"
                     /locus_tag="VLI40_03230"
     CDS             3117..4553
                     /gene="flgK"
                     /locus_tag="VLI40_03230"
                     /inference="COORDINATES: protein motif:HMM:TIGR02492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HSU96212.1"
                     /translation="MSINSIFNTATLAIQAQQTAIDTAAHNIANAGVAGYSRQVVNLQ
                     PNTPLYTPTGAIGTGVLVQDISRVRDTMLDTNYRAQASQAAGYSTAGDILTSIGQVFG
                     EPSSTGLSSTLDQFYASWGDLANNPTSSAAKSVVQERGSQVATMLNQFSTNLDQLSSN
                     TMADATQQVSSINQYTAQIANINKQIVAAEADGKTTANDLRDMRDNAIDALSKIVPVR
                     VIDQPNGSDTVYVAGATVVDGSTSSTFSLQQSSGKVALQLNGRTFSTQSPGGALGADL
                     DGLNTDIPNAKSQLDTLAAGVVTSVNAIHTTGWTAAGDAAGGSNWNASAPPTGSNINF
                     FDPTRTTAATISLSAQVASNASYIAAGDAQGATGNNNVANAMAALGSDMTTMTKFGSS
                     TETTSISEFYRDLVTRVGVATSDATSSATVYQTLTQQADTQRQSVSGVSTDEELISLT
                     KSQQAYAAAAKVITTAASMSQTLLDMIQ"
     gene            4613..4855
                     /locus_tag="VLI40_03235"
     CDS             4613..4855
                     /locus_tag="VLI40_03235"
                     /inference="COORDINATES: protein motif:HMM:NF014638.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006109 - regulation of carbohydrate
                     metabolic process [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator"
                     /protein_id="HSU96213.1"
                     /translation="MLILGRRPGDTLIIDGGIKIVVLQCDRSGVRLGIEAPSDVTILR
                     GEIVNQIADENKRANVVSEAKEWATTIPLKKTESSR"
BASE COUNT         1087 a         1531 c         1488 g          794 t
ORIGIN      
        1 gtggacggac acgacgttga ccgatgggag cacgccgagc gcggcagcag ctgtcgcacc
       61 cggctgggtc gcgcgcagag tgattcgcgc cggcgagatt cttcaggaac ctggcgttgc
      121 caagcccgat ctcgtgaatg ccggcgacgc ggtcgacgtg atctactccg tacccggcgt
      181 cgcaatccgg atgcacggaa cagcggtagg tcgcggcagc aagggcgacg aagtgtatgt
      241 gcgactcgac aatagacggc gcctgcgcgg tatcatcgcg ggaccgaaca ccgtgagggt
      301 gatgtaatgg gcgatgcaac gaaaattcga ttcacccgcg cactggccgc gatcgcatcc
      361 gctgcatttg catccgcgat atttgcatcc gcaacaatcg caggcgcatc cgtggcagga
      421 gcgcaagcgg gagcgccggc gccgagcacc gcggggcgaa ctgcggcaca gactcccggc
      481 ggtgcgcaga ccgccgcgca atcggcgcag agcactcccc cgcttacgtc aactgccgta
      541 gcaggcagac aatcgtggct ctcggatcgc agggattacc atctcggtga catcgtaacg
      601 gtgctggtgg acgagtacac gctcacttcg ctggacaagg aagtgaatgc gacagagaac
      661 cggcaacgtg gcctcggatt cggcatcaac acgccaacga gcaacaagaa ctacggtatc
      721 aactcgaaca acaacaatca gtcccagaac agcggactgg atgcaagaac caatcggctc
      781 accaccgaga tgagcgcacg cgtcgtcgca atcgctccca acggagtgat gcagctcaag
      841 ggcaacaaga tcatcaaggt cgaggagagc aaggtcaacc tgattctcac cggctgggtg
      901 cgcgttcagg acgtcgcacc ggacaacagc attcaatcat ttcgcatggc tgacgcagac
      961 ctcgattacc aggcagaagg cccgctcggc aaggcgaaga gcggaataat cggcaagctg
     1021 ctcggagcgt tctggccatg aggcgcatac tcgagacggt taccgctgcg ctcggctgct
     1081 ttgcgctgct cgcattccag gcaggcgcgc agtccgcacg aattcgcgac atcacgatgg
     1141 ccgacggatc catgccagtt cgcctgctcg gctacggcat cgtcgtgggt ctcgatggaa
     1201 ccggtgatcg cggagtcggc ggacagcagg gtggccagac cgttcagtcg gtagcaaacc
     1261 tgctgcgtcg cttcgacata gagatccccg cagaagtgct gcggacgcgc aatgccgctg
     1321 cagtactggt cacggctgaa gtatcaccgt atctgagacc gggcggaaag ttcgacatca
     1381 caatctcgtc gctgggcgac gctcgctcac tgcgcggagg cacattgtgg atgacgccgc
     1441 tcgtcaccga cgccggtgcg caggcggttg caaccggaca gggatcgatc gtcataagtg
     1501 acggcaacat caactcgcgc gacttcaata cggtggagac gtcgggacgc attccgagcg
     1561 gtggcttgct cgaaggatcc gtgactacgg cgagctttgc caattcgtcc cgactcctgt
     1621 tgaaggagcc cgacatcgga accgcgacca agatcgtcgc cgcgatcaat caggcgattg
     1681 gcgcgaacac agccaaggtg gaagatccgg gctcggtcga acttacgctc ccggcaacgg
     1741 gcgaccgcgc aactaccata gtcaagatcc aggacctcaa ggtcactccc gaccgctcca
     1801 acaagctggt tatcgatgga cgcgacggaa ccgtggtcgc cggcggcgac atgacggtgg
     1861 gcgaagcagt ggtgagccac ggcggaatca cgctgacaat tggcggtccc gccgcagcag
     1921 gaccggcagt ggccgcagcg ccaccatcgg gtcccgaacc ggccggcggc gtcggaaatc
     1981 aggccgtccg agtcgcgacc ggagcatcgg ttcaggcggt cgcgtcggcg ttacaggcgg
     2041 ttcagacgtc accatccgaa attgcggcga tcttcgaatc gctgcgcgaa gtgggcgccc
     2101 tctcagctga agtcaccatc agatgacctc catcggcggg ccgtcaccag tccggaacag
     2161 cacaccagcc gatcccgtcg caactgccca ggatgccaag cttcataagg tatcgagcca
     2221 gctggaaggg gtctttgtcc aggagatgta caagtcgatg cgctccaccg taccaagcgg
     2281 cgggctgttc gatggtggat ctggtgaaga aatgtttaca ggaatgctgg acgaacacat
     2341 tgctgccgat actccccaac actggaagca tggtctgagc gagtcgatct accggcaact
     2401 ccgggacaag atacacgccc agaatccatc gcttccgcct gacagcagcc tcgtgacgtc
     2461 gaccggcgtg gacaagtgaa gcacatcaca gagcaccgcg cacggaatat cgtgtcgatc
     2521 acgcagtcga ttgagagact atcgtaatga tgcagacgta tcaggagcac tccccgatcc
     2581 aggaaggcag cttccggacg agcaccgcac cggtgtcacc cgccgcgctc gacgcgctgt
     2641 gcgatgcgct gctctccgag cgcaagctca ttgacgacct tacggaggtc gtcctgcgcc
     2701 agcgttccgc tgttgcgatc gatgatctgc aggcggtcga cgattccgta ttcgccaccc
     2761 accgtctcct tctcacgctt ggcgaagcgc gcaagcgtcg ccgctcgctc aacgcgatgg
     2821 tcggctgcaa ggaagagacg ggtgtcaaac acctcgaaga tgcacttggc aagtggatga
     2881 ctccgcgcct tcgccaggct cgtgaggagc tgcagattgc cgcgggacgc ctctccagag
     2941 agataggcat caaccgacgc attctgcgcg aagcgatatc gaacagcgat tcgttcgtca
     3001 gagccgtcgt cggcgcaccg acagacgcaa cccagcaggg ctacggatca gcaacgccgt
     3061 ccgcatacac gcgcagcgac gccatcgcct tctcgcgcac cgcatagggg ccgatcatgt
     3121 caatcaattc catcttcaat acggcaacgc ttgccatcca ggcacagcag acggccatcg
     3181 atacggcggc gcataacatc gcgaatgccg gcgtcgcggg ctatagccgg caggtggtga
     3241 atctccagcc caacacgccg ctctacacac cgacaggcgc gattggcacc ggtgtgctgg
     3301 tccaggatat ctcacgtgtc cgcgatacga tgctggacac caactatcgc gcacaggcat
     3361 cgcaggcggc gggttattcg acagcgggcg acattctaac gtcgataggg caggtcttcg
     3421 gcgagccatc cagcaccgga ctgtccagca cgctggacca gttctacgcc tcatggggcg
     3481 atctggccaa caatcccacc agctcggcgg caaagagcgt cgtgcaggag cgtggctcgc
     3541 aggtcgcaac gatgctcaat cagttctcga cgaacctgga tcagctgtcg tccaacacga
     3601 tggcggatgc aacgcagcag gtaagctcga tcaatcagta cacggcacag attgcgaaca
     3661 tcaacaagca gatcgtggcg gccgaagccg acggaaagac gacggcgaat gatctgcgcg
     3721 acatgcgtga caacgcgatc gacgcgctca gcaagatcgt gccggtgcgc gtgatcgatc
     3781 agcccaatgg atcggacacg gtttacgtcg cgggtgcgac agttgtcgat ggttccacct
     3841 cctcgacgtt cagcctgcag cagtcgagcg gcaaggtcgc gcttcagctc aacggacgca
     3901 cgttctcgac gcagtcgcct ggcggtgcgc tgggtgccga tctggacgga ctgaacaccg
     3961 acatcccgaa cgccaagagt cagctcgaca ctctcgcggc cggcgtcgtg acaagcgtga
     4021 acgcgattca caccacgggg tggaccgcgg ccggtgatgc cgcgggcggc tccaactgga
     4081 acgcatcggc gccgccgact ggatcgaaca tcaatttctt cgatcccacc aggaccactg
     4141 ccgcaaccat cagcctgtca gcgcaggtcg ccagcaacgc gtcgtacatc gcggccggtg
     4201 atgcgcaggg tgccaccggc aacaacaacg tcgcaaacgc catggcggct ctcggaagcg
     4261 acatgacgac gatgacgaag ttcggatcat cgaccgagac cacgtcgatc agcgagttct
     4321 atcgcgatct cgtcacgcgc gtcggagtcg caacgagcga cgctacgtcg tcggcgaccg
     4381 tgtatcagac actcacgcaa caggccgata cacagcgcca gagcgtgagc ggagtctcca
     4441 cggacgagga gctcatctcg ctcacgaaaa gtcagcaggc gtacgcagca gcagccaagg
     4501 tcatcacgac cgcggccagc atgtcgcaga cactgctcga catgattcag tagccccacc
     4561 cgatcaacag tcgggcggcg agcaggaaac cgggttatct tctgcttatc ccatgctgat
     4621 tctggggcgg cggcccggag acacgctaat catcgacggt ggcatcaaga tcgtcgtact
     4681 ccagtgcgac cgtagcggtg tccgactcgg catcgaagcg cccagcgacg tgacgattct
     4741 gcgcggcgag atcgtcaacc agatcgcgga cgagaacaag cgcgccaacg tcgtctcgga
     4801 agccaaggag tgggccacca ccattccgct caaaaagaca gaatcgtcgc gatagctcag
     4861 attgaatccg gtcgagtccg gattcaatct cgcctcaatc
//
LOCUS       DATIMD010000141         1946 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3518859, whole genome shotgun sequence.
ACCESSION   DATIMD010000141 DATIMD010000000
VERSION     DATIMD010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3518859"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1776
                     /locus_tag="VLI40_03240"
     CDS             <1..1776
                     /locus_tag="VLI40_03240"
                     /inference="COORDINATES: protein motif:HMM:NF013239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HSU96214.1"
                     /translation="MIIGQGGYHLSTNGTRAPIQWLVGTDGWAMFVHQPHGSFDFSGT
                     TGKFMPAQALPLDMYIVSSHEPRVIMREYARITGLPEMPALWGFGYLQSSRTLAGPDE
                     VMGVARTMREKRLPCDALIYLGTGFCPSGWNTRNGDFTWNSANFPSPKQQVAALHAEH
                     FKVVLHVVVEGHHLTGKVSDPCTAAPLPSGVTADGHWPPDRQVACYWPSHKSVMVDDG
                     IDGWWPDQGDGFDGPSELNRHRMYWEGTQLFRPNERPFALHRNASAGVQRFGGFLWSG
                     DVQSRWETLRTHVAVGINSGLTGLPYWGTDIGGFVPTAEYTGELYARWFQFGAFCPLF
                     RSHGRNWHLHLPWGWNGGDGGPPETRNFQVDPAELHNATVEPICRKYLELRYRLLPYL
                     YTAVREAHDTGMPIMRALWLHHPDDATAVARGDEYLWGHDLLVAPVVEKGATSRRLYL
                     PRGTWFDFWTEERVDGGRELDAAVDLATMPLYARAGSVIPMGPVRQYVSEPSDEPVTL
                     IVYPGADGESSWYEDDGNTFDYRRGDFMRVTMTWRDAARRLTLRLAAGSRMRDPAPRR
                     IDVRVAGSRKVASLSFTGHDLEISL"
BASE COUNT          349 a          572 c          628 g          397 t
ORIGIN      
        1 atgatcatcg gacagggcgg ctatcatctc tcgacgaatg gcacacgcgc ccctattcag
       61 tggctcgtgg ggaccgatgg ctgggcaatg ttcgtccatc agccacacgg ctcattcgat
      121 ttcagcggca ctaccgggaa gttcatgccg gcacaggcgc tgccgctcga catgtacatc
      181 gtttcgtctc acgagccgcg cgtgatcatg cgcgagtatg cgcgcatcac cggtctgccg
      241 gagatgccgg cgctgtgggg cttcggctac ctccagtcgt cacgtacgct cgccggccct
      301 gacgaagtca tgggcgtggc gcgcacgatg cgcgagaagc ggcttccgtg cgatgcgctc
      361 atctatctcg gcaccggatt ctgtccgtct ggctggaaca cgcgcaacgg tgacttcacc
      421 tggaactccg cgaactttcc atcgccaaag cagcaggttg cagcgctgca cgctgaacat
      481 ttcaaggtcg tgctgcacgt ggtggtggaa ggacatcatt tgacgggaaa ggtttctgat
      541 ccgtgcacag cagcgccgct gccgagcgga gtaactgccg atggccactg gccgccggac
      601 cggcaggttg cgtgctactg gccatcgcac aagtcggtaa tggtggatga cgggatcgat
      661 ggatggtggc cggatcaggg cgacggcttc gacggtccat cggagctcaa ccggcatcgc
      721 atgtactggg aaggcacgca gctattccgt cccaacgagc gcccgtttgc gctgcaccgc
      781 aatgcatctg caggagtgca gcgattcggc ggctttctct ggtccggcga cgtgcagtcg
      841 cgctgggaaa cgctgcgtac gcatgtcgct gtcggtatca actcaggtct gaccggattg
      901 ccgtactggg gaaccgacat cggcgggttt gttccgacgg cggagtatac cggtgagctg
      961 tatgcgcgct ggttccagtt cggagcattc tgcccgttgt tccgatcgca cggacgcaac
     1021 tggcacctgc atctgccgtg gggatggaac ggcggcgacg gcggtccgcc ggagacgcgc
     1081 aattttcagg tggatcccgc tgagcttcac aatgcgactg tcgagccaat ctgcaggaaa
     1141 tatctcgagc tgcgctatcg gctgctgcca tatctgtata ccgcagttcg cgaggcccac
     1201 gatacgggga tgccgatcat gcgcgcgctg tggctgcacc atcccgacga tgcaaccgcc
     1261 gttgcgcgcg gtgacgagta tctctggggg cacgatctgc tcgtcgcgcc cgtagtggaa
     1321 aaaggcgcga cgtcacgacg tttgtatctt ccgcgcggaa catggttcga tttctggacg
     1381 gaagagcgcg tggatggtgg gcgcgagctc gatgctgcgg tggacctcgc gaccatgcca
     1441 ctctacgcgc gtgcgggctc ggtgataccc atgggtcctg taagacagta cgtcagcgag
     1501 ccgagcgatg aaccggtgac actgatcgtg tatcctggcg cggacggtga atcatcgtgg
     1561 tacgaggacg acggcaacac attcgattat cggcgcggtg acttcatgcg cgtcacgatg
     1621 acatggcgtg acgcggcacg acgactgaca ctgcgtctcg cggcaggatc gcgcatgcgc
     1681 gatcccgcgc cgcgtcgtat cgatgtacgg gtggcgggaa gcaggaaagt ggcgtcgctc
     1741 tcatttacgg gtcacgatct cgaaatttct ctgtgactct ttgaggctcg tcatccccgc
     1801 gttcgcggga atgacggagt taggttcccg ctttcgtggg aatgacggat gtgtgcaata
     1861 gcgatgtgac cgcccctacc ccttgcttcc accctgcccg tagtacgccg ccggtccatg
     1921 cttgcgcagg aaatgcttgt ccagca
//
LOCUS       DATIMD010000142         3548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4095940, whole genome shotgun sequence.
ACCESSION   DATIMD010000142 DATIMD010000000
VERSION     DATIMD010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3548
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4095940"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            165..1733
                     /locus_tag="VLI40_03245"
     CDS             165..1733
                     /locus_tag="VLI40_03245"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HSU96215.1"
                     /translation="MSHHQLPERPNLDQLKRQAKDLLHAVRQHDAAALTRAHALPAFT
                     SQSDDAVSAAFALHDAQSVVAREVGFVSWNDLRENVESITLDFTAAVDEFIAAATGRR
                     RDRAERVLDMHPRIARANFHTALLLGDAATVDSHLTRDPALATTLGGPRNWQPLHYVC
                     FTAVGAANSERERGLVAIARQLIVLGADPDLRFPWEHHGVHRPVLWGAVAVVHSLPLA
                     RALLEAGANPSDGVTLTLEASGSDVAALELLNEFGVDPNGPWATDGSTALYALLHWAD
                     SMDGALWLLAHGAEPDAVFPQNGETPLHVAAARWGIDLVEALASRGAMIDRRRADGRT
                     PYAVAMLSGNDAVAEWLRAHGANTDVAQVDQMIAAGSRGDVATVNAMLAAHPALRSEI
                     GPQHYPALYRAADQNDVEAVEGLLACGLDVNAGDEAMNMNALHKAAMAGWPDAVRVLL
                     AHGASVSARDREFHATPLVCAAEGSRHAAPGTDHATVGRMLLGAGSPTNWTSSDQPSE
                     GIPEIIAAWATSNG"
     gene            1926..3347
                     /locus_tag="VLI40_03250"
     CDS             1926..3347
                     /locus_tag="VLI40_03250"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF013413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane dipeptidase"
                     /protein_id="HSU96216.1"
                     /translation="MQLRVSLSLAALCCISVAPTLHAQDDAQNDALVARAHVIHSRVI
                     KLDTHVDFNPSSMSDTPPNYVTGLHNQVDLPKMKAGYNGIFFSIYVGQGELTPAGYQR
                     AYDADIAKFDAVHKLAEQMAPDQIEIARTAADVRRIVKSGKLVALMGVENGYGIGTDI
                     TRVKEFADRGARYLSLAHNGNNQLSDSNTGEADNVWMWHGVSPLGKQVVAEANKWGIM
                     LDISHPSKESNMWVMANSKAPVIASHSAVRALCPTASRDLDDEQLLALKKNGGVMQTV
                     AFTGYLVCTPATSPERTAALESLAQQYSLPVAVVSRGNVAGAGGVASVADGERSVVVR
                     SAACSIGDPTEAPQPATRGAREGRANPLAALDDATRTRYEAQRDAIDAQYPAPVPARR
                     ANVSDLVNHIDYAVKLIGIDHVGISSDFDGGGGIDGYNCAAEAPNVTVELVRRGYTEA
                     QIAQLWGGNLLRVMEQAEQAATH"
     gene            complement(3337..>3548)
                     /locus_tag="VLI40_03255"
     CDS             complement(3337..>3548)
                     /locus_tag="VLI40_03255"
                     /inference="COORDINATES: protein motif:HMM:NF014430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HSU96217.1"
                     /translation="MVGRLQCFRGISLHSAMVLATEIVDWRRFERPAQLTCYLGLVSR
                     EDSSGDRTRLGPITKAGNSHYPTSA"
BASE COUNT          652 a         1155 c         1129 g          612 t
ORIGIN      
        1 tcccgcttga cactcgccta cgctacgcca agattcccac ggtgcgtttg gggcgcccgc
       61 gggtccacgc gaaggactga gtcctccctg atctgaatga ccgttgcacg gctgtttccg
      121 tgctggcccg cttgtggacc gctggcactc agcatggagg ccatatgtcc caccatcagc
      181 tccccgagcg gccgaatctc gaccagctca agcggcaggc gaaagatctc ctgcacgccg
      241 tgcggcaaca cgatgccgcc gccctcaccc gcgcacacgc gctccccgca ttcacctcgc
      301 agtccgatga cgcggtctca gccgcattcg cactgcacga tgcgcaatcg gtcgtcgcgc
      361 gcgaggtcgg cttcgtgtcg tggaatgatc tccgcgaaaa cgtggagtca atcacgctcg
      421 actttaccgc tgcggtcgat gagttcatcg ccgccgcaac cggtcgtcgt cgtgaccgcg
      481 ccgaacgcgt gctcgacatg catccgcgaa tcgcgcgcgc caactttcac accgcattac
      541 ttctgggcga cgccgcaacc gtcgactcgc atctcacacg cgatcccgca ctcgccacca
      601 cactcggcgg tccgcgcaac tggcaaccgc tgcattacgt ctgcttcaca gcagtcggcg
      661 cggcaaattc cgagcgcgaa cggggtctcg tcgccatcgc acggcaactc atcgtcctcg
      721 gcgccgaccc cgatctccgc tttccgtggg agcatcacgg cgtacatcgc cccgtgctgt
      781 ggggcgccgt agccgtcgtg cattcgctgc cactcgcgcg agcgctgctc gaggccggtg
      841 caaatcccag cgatggcgtc acgttgacgc tcgaggcgag tggcagcgat gtcgcagcgc
      901 tcgagctgct gaacgagttc ggtgtcgatc cgaacggtcc gtgggcgacc gacggatcga
      961 cggcgctcta cgcgttgctg cactgggccg acagcatgga tggcgcgctc tggctactcg
     1021 cacacggcgc agagcctgac gcggtgttcc cgcagaatgg cgagactcca ttgcatgtag
     1081 cggcggcccg ttgggggatc gatctcgtcg aagcgctggc gagtcgcggc gcgatgatcg
     1141 accggcggcg cgccgatggt cgcacaccat acgccgtcgc gatgctgagc ggcaacgatg
     1201 ctgttgcgga atggctccgc gcccacggcg caaataccga tgtggcgcaa gtcgaccaga
     1261 tgattgccgc aggaagtcgt ggcgacgtcg cgactgtgaa tgcgatgctt gcggcgcatc
     1321 ccgcattgcg cagtgagatc ggcccgcagc attatccggc actttatcgt gcggccgacc
     1381 agaatgacgt cgaggcggtc gagggattgc tcgcgtgcgg cctcgatgtg aacgccggcg
     1441 atgaagcgat gaacatgaac gcactgcaca aggcggcgat ggctgggtgg cccgacgctg
     1501 tccgcgtgtt gctcgcacac ggcgcgtcgg tatcggcgcg cgatcgcgag tttcacgcga
     1561 cgccgctggt ctgcgcggcg gaaggttcgc gacatgccgc accgggcacc gatcacgcaa
     1621 cggtgggccg catgctgctg ggcgcgggat ccccaacgaa ctggacatcg agcgaccaac
     1681 cgtccgaagg aattccggaa atcattgccg cgtgggctac ttcaaacggg taaaccagca
     1741 ttacccctcg atcctgcgtt gtgcaaagtg cgcggcgcag gatcggatgc cgcatcggtc
     1801 gagctacgcc gtgcggtgct tcaaccgaac ggtcagctcg cccgcgtttc gctaccaaat
     1861 tacgcaattc cggaccgtgc ggtatcttgt gggttactgc ctccccactc atttccgaga
     1921 cagccatgca actacgcgtc agcctgtccc tcgctgcact ctgctgtata agtgttgccc
     1981 cgacactcca cgcgcaggac gacgcgcaaa acgacgcact ggtcgccagg gcgcacgtaa
     2041 tccacagccg cgtgatcaag ctcgacacgc acgtggattt caatccgtcg tcgatgagcg
     2101 acacgccgcc caactacgtg acgggactcc acaatcaggt cgatctgccc aagatgaagg
     2161 ccggctacaa cggcatcttc ttctcgatct atgtggggca gggtgagctg acgccggccg
     2221 gataccagcg cgcgtacgac gcggacatcg ccaagttcga cgccgtgcac aagctggccg
     2281 aacagatggc gcccgaccag atcgagatcg cgcgcactgc tgccgatgtg cgccgcatcg
     2341 tgaagagcgg gaagctcgtt gcgttgatgg gcgtggagaa cggttacgga atcggcaccg
     2401 acatcacccg agtgaaggaa ttcgccgatc gtggcgcgcg ctatctctca cttgcgcaca
     2461 atggcaacaa ccagctttcc gattccaaca ccggcgaggc cgacaacgtg tggatgtggc
     2521 acggcgtgag cccgctcggc aagcaggttg tggccgaggc gaacaagtgg ggcatcatgc
     2581 tcgacatatc gcatccgtca aaggaatcga acatgtgggt gatggccaac agcaaggcac
     2641 cggtcatcgc atcgcattcc gccgttcgtg cgctctgtcc caccgcgtcg cgtgacctgg
     2701 acgatgagca gttgctcgcg ctgaagaaaa atggcggtgt gatgcagacc gtggcgttca
     2761 cagggtatct ggtgtgcacg ccggcgacgt caccggagcg aacggctgcg ctcgaatcgc
     2821 tggcccaaca gtacagcctg cctgtcgccg tggtgagccg cggcaatgtg gccggtgccg
     2881 gcggtgtcgc cagtgtcgct gacggtgagc ggagcgtcgt cgttcgttcc gcggcgtgct
     2941 ccatcggcga tccgacagag gcgccgcagc ctgcaacgcg cggcgcgcgc gagggacgcg
     3001 cgaatccgct ggccgccctg gatgacgcaa cgcgcacgcg ttacgaggcc cagcgtgacg
     3061 cgatcgacgc gcagtatccc gcgccggtgc cggcacgccg cgcgaacgtg agtgatctcg
     3121 tcaatcacat cgactatgcg gtcaagctca tcgggatcga tcacgtcggc atctcatccg
     3181 acttcgacgg tggtggcggc atcgacggat acaactgcgc cgccgaggcg cccaatgtca
     3241 ccgtggaact cgtgcggcgc ggatatacgg aagcgcagat cgcgcagctg tggggcggga
     3301 acctgttgcg cgtgatggaa caggcagagc aggcggctac gcactagtgg ggtagtgact
     3361 gtttccggct ttcgtgatgg gtccgagtcg cgttcggtcc ccgctcgaat cctcacgtga
     3421 tacgagaccc aggtaacacg tgagctgcgc aggacgctcg aagcggcgcc agtccactat
     3481 ctccgtcgct aacaccatcg cggagtgcag cgagatgccg cggaagcatt gcagccggcc
     3541 aaccatgg
//
LOCUS       DATIMD010000143         3446 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_55920, whole genome shotgun sequence.
ACCESSION   DATIMD010000143 DATIMD010000000
VERSION     DATIMD010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3446
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55920"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1127)
                     /locus_tag="VLI40_03260"
     CDS             complement(<1..1127)
                     /locus_tag="VLI40_03260"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HSU96218.1"
                     /translation="MDIPRERAPNRRRYIYGGVGLLAIIAVVVGVASLKPAAPSVDRS
                     SVVIDSVRRGDMVIDVRGPGSLVPEQIRWVSAITAGRVDRIDVRPGATVTDTTTLLEL
                     SNPDVQLEALSAQQQLNAAEAALVNLRITLSTQKLAQEGVVATTTSDYNDAMRNATAF
                     DELEKKGFLAKGLLAPMDVSKAKDKAVELKARMAIEKQRLDVMSQSITQQIDLQKSQV
                     DKLRDIAQFQQSRIASMQVRAGAAGQVTELSLEPGQYVLPGTNLAKVAQPGRLKAVLH
                     IPETQAKDIQIGQVASIDTRNGIIPGHVIRIDPGAVNGTVEVDVGLDGALPKGARPDL
                     SVDGTIELDRLKNVLYVGRPAYGEPESTVGIFKLTNGGKEA"
     gene            complement(1162..>3446)
                     /locus_tag="VLI40_03265"
     CDS             complement(1162..>3446)
                     /locus_tag="VLI40_03265"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU96219.1"
                     /translation="DSRWGLSQAGFFFFQKNAHTLENVAAVMPQRMTITGKRAAERVP
                     AVQVSASIFNVLRLHPMLGRVLNESDNLPNAQPVAVISYNYWTTRLNSDPHVIGSMIT
                     VNTIPVQLVGVMGKDATIPDAASPNVDLWLPAELDPSATPQNHHYLPVIARLAPGATV
                     ASAQAELAQITKRFPILFPTAYSESFLKGTGFTTAVVPLQARIIGDISTRLWILLGAV
                     GLVLIIACGNVANLFLVRAEARKHEIAIRTALGAKRTDLARHYFTETMLLALVGGTAA
                     LALAAVGLHVIVALAPTDIPRISEVHLGSSGALFTFGLSVTVGILLGVLVLFGAIPAD
                     AAGMLREGSRGMTSSARQRFTRGVFVAAQTALALVLLASAGLMLQSFRNLRSVSPGFD
                     PSNVWTAELSLPAARYATPEQVEGFYHDLLVRAAAIPGVRVAGAGEIVPLGPSNDGTA
                     IGGFSGCSQLSIENAAQNQGQWVGCIGAKTVAPGYFAALGIRVRGAEPGWSDVEARTG
                     GVVVTNALAERLWPHQDAIGKGVRPDARKPPFYRVVGVSDDIHGTSLSDPPAEAVFFP
                     LLSIPKTFLEGPTRTMTIVLRSSGVPPETLTGSLRRILNNMDSDVPLGNVRPMEDIVA
                     RSMIRLSFTMTLLAIAASMALILSAIGIYGVISYIVGQRRGEIGIRMALGAHASRVGT
                     MVVRQSVQFAVVGIVVGILATIAVTRVLSSVLYGVSPTDPTTLIVVSIIMLLIAAVAS
                     YVPAQRAMSVDPVEALRADQ"
BASE COUNT          682 a         1068 c          993 g          703 t
ORIGIN      
        1 tgcgcttcct tgccgccgtt ggtaagtttg aagattccca cggtgctctc gggctcgccg
       61 tacgccgggc gtcctacata cagcacgttc ttcaatcgat cgagctcgat cgttccgtcg
      121 acgctgagat cgggacgcgc ccccttgggc aacgcgccat cgagcccgac gtccacttcc
      181 acagttccat tcaccgcgcc tggatcgatg cgtatcacat ggccgggaat tatcccattg
      241 cgcgtgtcga tcgacgcgac ctgcccgatc tggatatcct ttgcctgcgt ctcgggaatg
      301 tgcagcacag ccttcaaccg gccaggctgc gcgactttcg cgagattggt tccgggaagc
      361 acgtactgac cgggctcgag cgacagttcg gtcacctggc cggccgcacc ggcgcgaacc
      421 tgcatcgatg cgatgcgact ctgctggaac tgcgcgatgt cacgcagctt gtcgacctgc
      481 gatttctgta aatcaatctg ttgcgtaatc gactgtgaca tgacgtcgag ccgctgcttc
      541 tcgatcgcca tcctcgcctt gagctcgacg gccttgtcct tcgccttgct gacatccatc
      601 ggagcgagga gaccctttgc aagaaatccc ttcttctcca gctcatcgaa ggcggtcgca
      661 tttcgcatcg cgtcgttgta atccgacgtc gtcgtcgcga caacgccttc ctgcgcgagc
      721 ttctgcgtcg acagagtgat cctcaggttg acgagcgcag cctcggcggc attcagctgc
      781 tgttgcgcgc tgagagcttc gagctgtacg tccggattgc tcagctccag tagagtcgtc
      841 gtatcggtga ccgtcgcgcc cgggcgcaca tcgatgcgat ccacacgccc ggcggttatc
      901 gccgacaccc agcgaatctg ctcaggcacg agcgagcctg gcccgcgcac gtcgatcacc
      961 atgtcgccac ggcgtaccga gtcgatgacc acggatgacc tgtcgacgct cggtgcagcg
     1021 ggtttgaggc tcgcgacgcc gacgaccact gcgatgatcg caagcagccc gactcctcca
     1081 tatatgtagc gccgtctgtt cggcgcgcgt tcacgcggga tatccactta gattctttgc
     1141 tttgtcatat ggtttgaacc gctattgatc cgctcgaagt gcttcgaccg gatcgacact
     1201 catcgcacgc tgcgccggta cgtagctagc gacggccgca atgagcagca ttatgatcga
     1261 gacgacaatc aacgtcgttg ggtcggtggg actaacgccg tatagcacgg agctcagcac
     1321 acgcgtgacc gcaatggttg ccaggattcc gacgacgatt ccaacgacgg cgaactgtac
     1381 agactgtctc accaccatcg taccgacacg cgatgcgtgt gcaccgagtg ccatgcgaat
     1441 cccgatctcg ccgcgacgct gtccgacgat gtacgagatc actccgtaga tcccgatagc
     1501 actcaggatc aacgccatgg aagcggcgat cgcgagcagc gtcatcgtga acgagagacg
     1561 gatcatcgag cgcgcgacga tgtcttccat tggccgaacg ttaccgagtg gaacgtccga
     1621 atccatgtta ttcagaatac ggcggagaga tcctgttagc gtttccggtg gaacgccgga
     1681 tgaccgaagc acgatggtca tggttctcgt cggtccctcc agaaacgtct ttggaatcga
     1741 cagcagcgga aagaagacag cttctgccgg aggatcgctc aacgatgtgc catggatatc
     1801 atcgctgacc cctacaacgc gatagaacgg cggcttcctt gcgtctggtc tgactccctt
     1861 tcctatcgcg tcctgatggg gccacaatcg ttcagccagt gcgttggtga caacgacgcc
     1921 gcccgtgcgc gcctctacgt cgctccaacc tggctccgcg ccgcgtaccc tgatgccgag
     1981 cgcggcaaag taacccggtg cgactgtctt tgcgccaatg cagccgaccc attgcccctg
     2041 gttctgggcc gcgttttcga tcgacagctg cgaacaaccg ctgaatccgc caatcgcggt
     2101 gccgtcgttg gacggaccca gcggcactat ttcgcctgcg cctgccacgc gtactccagg
     2161 aattgccgca gcgcgcacaa gaaggtcgtg atagaatcct tcgacctgtt ccggcgtcgc
     2221 gtaccgtgca gccggcaggc tcaactccgc tgtccatacg ttcgacgggt cgaacccggg
     2281 agacacgcta cggagattcc gaaagctctg caacatgagt ccggcggaag ccagtagtac
     2341 cagcgcgagc gccgtctgcg ctgcgacgaa cacaccgcga gtaaagcgtt gtcgagcgga
     2401 cgatgtcatg ccccggctgc cctcacgcag catccctgca gcatctgccg ggatcgctcc
     2461 gaaaagcacc agcacaccta acagaattcc gaccgtcacg gataggccaa acgtgaaaag
     2521 tgcaccggac gatccgagat gtacttcgct aatccgcgga atatcggtcg gagcgagcgc
     2581 tacaattacg tgcaggccga ccgccgcgag cgcgagcgcc gcggtgccac cgacaagcgc
     2641 gagcagcatg gtctccgtga aatagtgccg cgcgaggtcg gttcgttttg ctccgagtgc
     2701 cgttcgaatc gcgatttcat gtttgcgcgc ttcggcgcgc acgagaaaca ggttcgcgac
     2761 gttgccacac gcaattatca gtacgaggcc gacggcgccg agcagaatcc agaggcgtgt
     2821 cgagatatcg ccgatgatac gcgcctggag tggcacaacg gccgtagtaa agccggttcc
     2881 tttgagaaag ctttccgaat atgcggtcgg aaacagaatg ggaaagcgtt tcgttatctg
     2941 cgcaagttcc gcttgtgcgg acgccacagt tgcaccgggc gccagtcgcg cgatgaccgg
     3001 gagatagtgg tgattctgtg gcgttgcgct cggatccagt tccgctggaa gccacagatc
     3061 cacattcgga gatgccgcat cgggaatcgt tgcatccttt cccattactc cgaccaattg
     3121 caccggtatc gtattcactg taatcatcga gccaatcacg tgcggatcgc tattgagacg
     3181 tgttgtccaa tagttgtagc tgatgaccgc taccggttgc gcattcggca gattgtcgga
     3241 ctcattgagc acgcgaccga gcatcgggtg gagacgaagc acgttgaata tgctcgcgct
     3301 cacttgcact gctggcacgc gctccgccgc gcgcttgcct gtgatcgtca tccgctgtgg
     3361 catgacggcg gcaacgtttt cgagcgtatg ggcgtttttc tgaaagaaga agaaaccggc
     3421 ttgggatagc ccccacctgg aatccg
//
LOCUS       DATIMD010000144         2340 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4096669, whole genome shotgun sequence.
ACCESSION   DATIMD010000144 DATIMD010000000
VERSION     DATIMD010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4096669"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2340)
                     /locus_tag="VLI40_03270"
     CDS             complement(<1..>2340)
                     /locus_tag="VLI40_03270"
                     /inference="COORDINATES: protein motif:HMM:NF017081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HSU96220.1"
                     /translation="AWFFWWIGDGLGMLIVAPVVIAGVLAVKRPRFKSRSAAEAVLVF
                     VALAVISQVTLGPEHSWATGLGPFATFPLLLWAGLRFGPSGAACATLVVAAIATWNAA
                     LHLGPFADASLSVIDTAMQTYTYLTVTSLCALIPAAAVAEREASARRQSESEDRYRSV
                     VEAATDAIVTIDAESRVRFANSAVKDIFGYAPDELVGCDLDIIVPELLRPLHRAGLAS
                     YVATGKQTREWRAMRLVGRHRDGHEIPLEISFGVRNEGTARVLTGIIRDISDQQMTAR
                     ALRDAEDRMGFALAASRVGTWEVDVATGASTWSTIQEELHGIAPGTYGGTLQAFVDEI
                     HPDDRQQVQDAIQQALQQRTDSNLLYRTIWPDGSVHWISGVGRSFYDDDGAPIRAAGI
                     ALDVTERRALEEQYRQSQKMEAVGQLAGGVAHDFNNLLTVIQSYGCMLRDDIQPNSEA
                     AANIEEVLSAADRAAALTRQLLAFSRGQVLAPKALCLSESLHSVEPMLRRLIGEHVDI
                     VVRVLHDAGNIVADPTEIEQVILNLAINARDAMPDGGTLTLEITNVELDTAYRRVHGT
                     AATGHYVMLAVSDTGVGMDAATAARVFEPFFTTKPPGKGTGLGLSTVYGIATRNGGSV
                     AVYSEPNCGTTFKVYFPRADAVVAPVRATPSTCAPAGSETLLLVEDDPAIRKITTRIL
                     TAAGYRVVSAGSPAEALEITRIDAEGIDLLFTDVVLPEMNGRGLAEKLSARFPAMKVL
                     YMSGYTDDMVVRTGVLEHDTLFLQKPFSQGVLLSKVREAL"
BASE COUNT          438 a          744 c          687 g          471 t
ORIGIN      
        1 cagcgcctct cgcaccttgc tcagcaagac accctgcgaa aacggttttt gcagaaacag
       61 tgtatcgtgc tcgagtacgc cagtgcgcac gaccatgtcg tccgtatagc cggacatgta
      121 gaggactttc attgccggaa accgggccga cagcttttct gccaagcctc gcccgttcat
      181 ctccggcaga accacatcgg taaagagaag gtctatacct tccgcatcga ttctggtgat
      241 ctccaacgcc tccgcgggcg atccagcgga gaccacgcga tatccagcgg ctgtcaggat
      301 tcgggtcgtg atttttcgga tcgcgggatc atcttcaacc agcagcaacg tctcggagcc
      361 ggctggtgcg catgtcgacg gagttgccct gactggtgcg accactgcat cggcgcgcgg
      421 aaaatagacc ttgaaagtcg tcccgcagtt tggctcgctg taaacggcga cagatccgcc
      481 gttcctggtg gcaatcccat acacggtcga cagaccgagc cccgtgccct tgcccggcgg
      541 cttcgtagtg aagaatggtt cgaacactct cgccgcggtg gctgcatcca tgccgacgcc
      601 tgtgtcgctg actgccagca tcacatagtg tccggttgcg gctgttccgt gaacgcgccg
      661 atatgcagtg tccagctcta cgttcgtgat ctccagcgtc agcgtgccgc cgtccggcat
      721 cgcgtcgcgc gcgttgattg cgagattgag tattacctgt tcgatctcag tggggtccgc
      781 aacgatgttg cctgcgtcgt gcagtacgcg cacgacgatg tcgacgtgct cgccgatcag
      841 gcggcgaagc atcggctcga cgctgtgcaa tgattccgac agacacaagg ccttcggtgc
      901 gagaacctgc ccgcggctga acgcgagtaa ttggcgcgtc agagccgcag cgcgatccgc
      961 agctgaaaga acctcctcga tgttggcggc ggcctcgcta ttcggctgta tgtcatcgcg
     1021 cagcatgcat ccgtaactct ggatcacagt cagcaggttg ttgaaatcgt gagcgacacc
     1081 gcccgccaat tgtccaacag cctccatttt ctgtgattgc cggtactgtt cctcgagcgc
     1141 gcgtcgctcg gtgacgtcga gtgcgatgcc cgcggcgcgt atcggtgcac cgtcgtcgtc
     1201 ataaaaggag cgcccgactc cgctgatcca gtgaacgctt ccgtcgggcc agatggtgcg
     1261 atagagaaga ttcgaatcgg tgcgttgttg cagcgcctgt tgaatcgcat cctggacctg
     1321 ctgccggtcg tccgggtgga tttcatcaac gaatgcctgc agcgtcccgc catacgtgcc
     1381 cggcgcaatt ccgtgcagct cttcctggat ggttgaccat gtcgacgcgc cggttgcaac
     1441 gtccacctcc catgtaccaa cgcgcgaggc agccagcgcg aaccccatgc ggtcttccgc
     1501 atcgcgcagt gcgcgtgcag tcatctgctg gtcgctgatg tcgcggatga tccctgtcaa
     1561 tacgcgcgca gtcccttcgt tgcgaacgcc gaacgagatc tcgaggggaa tctcgtgacc
     1621 atccctgtgc cgaccgacga gtcgcatcgc tctccactct ctggtctgct tgccagtcgc
     1681 cacgtaactg gccaggccgg ccctgtgaag gggtcgaagt agttccggta cgatgatgtc
     1741 gaggtcgcac ccgacgagct cgtcgggtgc gtagccaaag atgtccttca cggcggagtt
     1801 cgcgaagcgc acgcggctct ccgcgtcgat cgtcacgatt gcatccgtcg ccgcttccac
     1861 gactgagcga tagcgatcct cactctcact ctgccggcgg gccgatgcct ctcgctcggc
     1921 gactgccgcg gcaggaatca gcgcacacaa actcgtgacg gtgagatacg tgtacgtttg
     1981 catcgcggtg tcgatcactg ataatgacgc gtcggcgaac ggacccagat gcagcgctgc
     2041 gttccacgtt gcgatcgccg caacgacgag cgttgcgcat gctgctcccg acggcccaaa
     2101 gcgcaggccg gcccagagaa gcagtggaaa cgtggcgaat ggtccgagcc cggttgccca
     2161 cgagtgttcg ggaccgagtg tgacctgcga tatcaccgcc agcgcgacaa acacaagtac
     2221 cgcctcggct gcggatcgac ttttgaatcg cgggcgtttc actgccagaa ccccggcaat
     2281 caccactggc gccactatca gcattccaag gccgtcgcct atccaccaga agaaccatgc
//
LOCUS       DATIMD010000145         2169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3809128, whole genome shotgun sequence.
ACCESSION   DATIMD010000145 DATIMD010000000
VERSION     DATIMD010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3809128"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..440)
                     /locus_tag="VLI40_03275"
     CDS             complement(<1..440)
                     /locus_tag="VLI40_03275"
                     /inference="COORDINATES: protein motif:HMM:NF012562.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96221.1"
                     /translation="MISIDFTNMMASAVENGVTDEEWDEAYGAFAAVHKGVDALRASG
                     VADFMNLPRNAPLLQQAIDFAGKNRGRYDDVIILGIGGSALGPIALKTALCSAGWNEL
                     SDDARSGHPRLHVLDNIDPITVAAVLDRLALERTLFIVTSKSGGT"
     gene            complement(437..1213)
                     /locus_tag="VLI40_03280"
     CDS             complement(437..1213)
                     /locus_tag="VLI40_03280"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSU96222.1"
                     /translation="MKLTFLGTGTSFGVPQIGCGCAVCRSPDPRDKRGRVGALVETNG
                     GTRLLIDTPPELRLQLIANGIDRVDAVLFTHEHADHTHGLDDIRAITNRRAAPLTMYG
                     PATTLDRLRERFAYIFDDNMRVLPGTSKPEGRAEALLPGVPVSIGDAIVTPVAVPHGL
                     VTVFAYRIGDLAYVTDAKSIPPEAAAILRGAKVLVINALFRTDHPSHLSLPEAISAAR
                     ELGAERTYLTHLTHDNFHADLEAELPRDIQPAFDGLTVRI"
     gene            complement(1309..>2169)
                     /gene="pyk"
                     /locus_tag="VLI40_03285"
     CDS             complement(1309..>2169)
                     /gene="pyk"
                     /locus_tag="VLI40_03285"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HSU96223.1"
                     /translation="ELDYLALSFVRRAEDITSLRELLPPWMNIVAKIEKDAALANIES
                     IIRASDGVMVARGDLGVELPFEEVPVAQKRIISLSNQIGRPVITATQMLESMVTNPRP
                     TRAEASDVANAILDGTDAVMLSAETAAGSYPKLAVEAMSRIIAEIEQHPPSRQLRDLR
                     NRQIGIVTTEVAIAAATVAAVRMLGAPLVVVITKSGFSARIVSSHRPPVPVLALTDNT
                     RTRNQLALLWGVIPHVAESRPTYTEMAEVGKLVVRELNLAAAGDRVIFTAGHPFGIPG
                     TTNLLKVEIV"
BASE COUNT          382 a          677 c          686 g          424 t
ORIGIN      
        1 gtgccgccgg acttggacgt gacgatgaac agcgtgcgct ccagagcgag cctgtcgagg
       61 acagcagcga cagttatcgg atcgatgttg tcgagcacgt gcaggcgcgg atggcctgac
      121 cgcgcgtcat cggagagctc attccagccg gcgctgcaga gcgcggtctt gagagcgatc
      181 gggccgagcg ccgatccacc gataccgagt atgatgacgt cgtcatagcg tccacgattt
      241 ttaccggcga agtcgatcgc ctgctgcaac agcggtgcgt tgcgcggcag gttcatgaaa
      301 tcggcgactc cgcttgcgcg cagcgcgtcg actcccttgt ggaccgcggc gaacgcgccg
      361 tacgcctcgt cccattcctc gtccgtgacg ccgttctcga cggcgctcgc catcatgttg
      421 gtgaagtcga tcgaaatcat attcgtaccg tcaatccgtc gaatgctggt tgtatgtcgc
      481 gcggcagctc agcctcgaga tcggcgtgaa agttgtcgtg tgtgagatga gtcaggtacg
      541 tgcgctcagc gccaagctcc cttgccgcgc tgattgcttc aggcaagctc aggtggctcg
      601 gatgatcggt ccggaacaac gcattgatga cgagcacctt cgctccgcga agtatcgcgg
      661 ccgcttctgg cgggatgctc ttggcgtcgg ttacgtacgc caggtcgccg atacggtatg
      721 caaaaaccgt gacaagaccg tgcggcacag cgacgggagt gacgatggcg tcgccgatgg
      781 atacaggcac gcccggaaga agcgcttcgg cccggccttc cggcttgctc gtgccgggca
      841 gcacgcgcat gttgtcatcg aatatgtacg cgaagcgctc gcgcagccga tccagcgtcg
      901 tggccggtcc gtacatcgtc agtggcgcgg ctctgcgatt cgtgatcgcg cgaatgtcgt
      961 ccaggccgtg cgtgtgatct gcatgctcgt gcgtgaacag cacggcgtcg acccgatcga
     1021 tgccgttcgc gatcagctgc agccgcagct cgggcggagt gtcgatgagg agccgtgttc
     1081 caccgttcgt ctccacgaga gcgcctaccc tgccgcgctt gtcgcgcgga tccggcgatc
     1141 tgcacacggc gcagccgcag ccgatctggg gcacgccgaa actcgtcccg gtcccgagga
     1201 aggtgagctt cacaaccgcg atcgcctcac gatgacgtca tgatacgctc accaccgcgc
     1261 tcaccaccgc gctcaccacc gcgcttctcg ccgagttccg gcattgaatc acacgatctc
     1321 cactttgaga aggttggtcg ttccgggaat tccgaatgga tgccccgcgg tgaatatcac
     1381 gcggtcaccc gcggcggcga ggttcagctc gcgcacgacc agcttcccga cttcggccat
     1441 ctcggtgtat gtggggcgtg attcggcgac gtgaggaatg acgccccaca atagcgcaag
     1501 ctggttgcgt gtgcgtgtat tgtcggtcag tgcgagcact ggcacgggcg ggcgatgcga
     1561 cgagacgatg cgcgctgaaa atccgctctt tgtgattacg acgacgagcg gagcaccgag
     1621 catccggacg gctgcaacgg tcgcggccgc gatagccact tctgtcgtga cgattccaat
     1681 ctgccgattg cgcagatcgc ggagctggcg tgacggcgga tgttgctcta tctccgcgat
     1741 gatgcgactc atcgcctcga ctgccagttt cggatagctt cccgcggcgg tttcagcaga
     1801 cagcatcacc gcgtcggtac cgtccaggat ggcatttgcg acgtcgctcg cctcggcgcg
     1861 tgtaggccgt ggattggtca ccatcgactc cagcatctga gtcgccgtga ttaccggtcg
     1921 gccgatctga ttggacagcg atatgatccg cttctgcgca accggcactt cctcgaacgg
     1981 cagctcgacg ccgagatcgc cgcgtgccac catgactccg tcggacgcac ggattatcga
     2041 ctcgatgttg gcgagcgccg catccttctc gatcttcgcg acgatgttca tccatggcgg
     2101 caacagctcg cggagcgacg tgatgtcctc ggcgcgccgc acaaagctga gcgcgagata
     2161 gtcaagctc
//
LOCUS       DATIMD010000146         9819 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4965977, whole genome shotgun sequence.
ACCESSION   DATIMD010000146 DATIMD010000000
VERSION     DATIMD010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9819
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4965977"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1397)
                     /locus_tag="VLI40_03290"
     CDS             complement(<1..1397)
                     /locus_tag="VLI40_03290"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HSU96224.1"
                     /translation="MPSTKKRARGTGRTRAAAPRPATPPAPTATPMSAQPEIETPPSE
                     RTLPVLALRDVVFFPNVIMPLLIGRRSSLGALDEAALESGDVFLVAQRDASDEEPGGP
                     DLFRTGVIARVIQLSRLPNGSSKVLLEGRERARVTRFVRRRRGILHADVRLDPLVASG
                     HEDARLTDATARRAVTLFEEYVELQRRIPSEVVALVQSAATPERQAYGIAAHVPASLE
                     VRQRILESATLEDAFSAITVLLAGEIEVLRIERKLDDDTRGAMYQTQREFYLQEQLKL
                     IHRELGQDDADDVSELESSLQAKALPEPVRMRVQRELRKLRRMAPTSPEYTVSRNFLD
                     WIGALPWDERTAETLHVAHARRILDEDHYGLQDVKDRILDFIAVLSLVGRIDGPILCL
                     VGPPGVGKTSLGRSIARALGRKFVRMSLGGVRDEAEIRGHRRTYIGSMPGRVIQAMRK
                     AEVVNPVILLDEIDKL"
     gene            complement(1781..3019)
                     /gene="clpX"
                     /locus_tag="VLI40_03295"
     CDS             complement(1781..3019)
                     /gene="clpX"
                     /locus_tag="VLI40_03295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HSU96225.1"
                     /translation="MSTDKHLRCSFCGKSKDSVRKFISGPSVYICNECIALCNEILQE
                     DEEREVADAITQVPSPQEIKDVLDQYVIGQEQAKKALSVSVYNHYKRINAAAVKDDEV
                     ELDKSNILLIGPTGTGKTLLARTLARILDVPFTIADATTLTEAGYVGEDVENILVRLL
                     QAGDFNVNDCERGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPP
                     QGGRKHPQQEYIQINTKDILFICGGAFDGLEKIIESRMGRRQIGFGDSDAKQAASKNT
                     FANVEPDDLLRFGLIPELVGRLPVTVALDALDEESLVRILKEPKNALTKQYQRLFALE
                     DVKISFEESALTAVATKALKRGTGARGLRAILEEALMDVMFDIPAREDVVEVRVTESC
                     ITNKTPPLLELSPVRRKKEA"
     gene            complement(3123..3788)
                     /locus_tag="VLI40_03300"
     CDS             complement(3123..3788)
                     /locus_tag="VLI40_03300"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HSU96226.1"
                     /translation="MYGLPIFAVAIAPAMTRGFDCERHHRKSIRLRGYDYAAPGVYFV
                     TIDTQDHICLFGEIVRDCMYPNAAGMAARTAWYAIPVHFPLVRLDAFVVMPNHVHGII
                     VIAGAPAAQDDALATDNASAPDDALVGATHASPLRAWPPRSWPPRSSPIRPHGPPRHS
                     VGAIVGSYKSAVSRQINQLRGTRGGVVWQRNYYERIIRNYPSLQRVREYIYANPRRWN
                     DHG"
     gene            complement(4000..4629)
                     /locus_tag="VLI40_03305"
     CDS             complement(4000..4629)
                     /locus_tag="VLI40_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HSU96227.1"
                     /translation="MPIYAPYVIERSSRGERTYDVFSRLLMDRIVFLGTPVTDDVANV
                     IIAQLLFLESDNQERDIHMYINSPGGSVSAGMAIYDTMQFLKSPVNTTCMGMAASMGA
                     FLLMAGRKGKRFALPHSRIMIHQPSQNGGGGSASDIEIQAKEILFLREKLNSLMAKHT
                     GQPLERIERDTDRDRFLSADEAKEYGLIDQVITHRGDVIDSSTQPQVTV"
     gene            complement(4632..5879)
                     /gene="tig"
                     /locus_tag="VLI40_03310"
     CDS             complement(4632..5879)
                     /gene="tig"
                     /locus_tag="VLI40_03310"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR00115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HSU96228.1"
                     /translation="MEIQLNPKTTTGVERAVEVTVPAAEVAAAEERTTKRYASQARLP
                     GFRPGKAPAAVVRKKFAEAIRNETIESVVREAYKEIVEKDNIQVASQPHIHDLKFEEG
                     SPLTFEFHYEVRPTVELGRTNGFKVRREPTTVTDEQLQEQIDRLRDERAAWAPVEGKP
                     IEGDMVSVGLSVADDEGKLGEPRDVSLVLGDGKAIAGIEELIMEAGPGETVERPVRWP
                     EDFPEEAQRGQTKTVRATVHEVKRKSLPTLDDAFAREVGDFDSADALRTAVRQDMEKF
                     AQRESEAHVRQGLIDQVIAANPFDVPRSWVGQLVDNYAETYQVPPDQRAQFDTEFTQV
                     AERQIKRDLIVEAIAEQEKLAASERDLDDRIAEQAAERGVEPGQLYTALEKSGRLKDL
                     ERTITEDKVFKWLVERNDIVTEA"
     gene            complement(5972..6613)
                     /locus_tag="VLI40_03315"
     CDS             complement(5972..6613)
                     /locus_tag="VLI40_03315"
                     /inference="COORDINATES: protein motif:HMM:NF036806.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSU96229.1"
                     /translation="MNRKFFETTRGKVLALLQREPRTVDEIATALQITDNAVRAHIVA
                     LERDGLVIRRGSRPTGTRPAYAYELTPDARRGLSDASRPVLSGLLGVLRERLPQKELE
                     SVLSEVGRRLAEVRGRTTGSIRSRAEAAAAALRDLGGVVDIEEINGKIILRGLYCPLG
                     DAVSAHPITCNAAESMVAEIVQAPVLACCEHGTPSRCKFEIMLDSGQSDRAVA"
     gene            6811..8421
                     /locus_tag="VLI40_03320"
     CDS             6811..8421
                     /locus_tag="VLI40_03320"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSU96230.1"
                     /translation="MSDQDVVLSGPDFTKGVPMHSLGEGQLVQGHADGKPAMLIRRGE
                     TVFAVGAVCSHYGGPLAEGIVVGDTVRCPWHHACFSLKTGEALRAPALHSLPCWAVEQ
                     RDGKVYVTHEIETPSAVAPTGSEARKARSVVIIGGGAAGSAAAETLRREGFAGSITMV
                     SADDDAPYDRPNISKDYLAGTAPEEWIPLRPRSVYEKQGITLRLGVRATDIDVAKHVV
                     QLSDGSSVAYDALLLATGATPVRLPPRMDPLQRVMYLRTLADSRAIIAACEHAGHAVV
                     IGASFIGLEVAAALRTRGLHVDIVAPEHRPLERILGIELGRIIQQIHEDHGATFHLGN
                     ALASVGGDHVLLASGERLQADLVIAGIGVRPDLTLARAAGLSVDHGVVVDEFLETSTA
                     GVYAAGDIAQWTDTVSRHSRRIEHWVVAERQGAAVAHNIVARFEGTPREPFIAVPFFW
                     SAHYDTTISYVGHADSWDETEVLGDFRDGTIAVTYRSGGQDQAVATIGRDILSLDAEM
                     TMERAADTALQLGIESDSTLGRRKPIPA"
     gene            8505..9077
                     /gene="folE"
                     /locus_tag="VLI40_03325"
     CDS             8505..9077
                     /gene="folE"
                     /locus_tag="VLI40_03325"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HSU96231.1"
                     /translation="MELLVHRQLELLGEDPDRDGLLKTPERIAKSLAWLTRGYDMNLA
                     DIVGDAVFEERQENMVMVRDIELYSLCEHHMLPFFGRAHVAYIPDGRIIGLSKLARIV
                     DMFARRLQVQERLTEEIAEAICDILKPRGVGVVIEASHLCMMMRGVQKQNSTTITSAL
                     RGNFRDDPKTRDEFLRLAQGRGSGSFNGGI"
     gene            complement(9115..>9819)
                     /locus_tag="VLI40_03330"
     CDS             complement(9115..>9819)
                     /locus_tag="VLI40_03330"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HSU96232.1"
                     /translation="GGISVLATIAVAPLDKPVSAELQEAGWQKDEPLHSASQALAFAG
                     GPGPFLVGAGFFAAGHLGGNPGLSRVGTHVTEAVLLAAGVTALGKGIAGRALPGVKTS
                     ENFEWARGFHRGNGPFVSFPSGHTAAAFAMASALTGETAAWRPGLARYVGPFSYITAS
                     AIGFARLYQHVHWVSDLPLAAAIGTWSGLSVESHVHHAGKHGAIGRIAQRVMLQPGPE
                     GGMLVGLSLPFSAPGK"
BASE COUNT         1758 a         3007 c         3108 g         1946 t
ORIGIN      
        1 agcttgtcga tctcgtccag caatatcacg gggttcacca cctcggcctt ccgcatggcc
       61 tgaatcactc ggcccggcat cgaccctatg taagtgcgtc gatgtccgcg gatctccgcc
      121 tcatcgcgca cgccgcccag cgacatgcgc acgaacttgc ggccaagcgc acgcgcgatg
      181 gagcgaccga gtgacgtctt gccgacgccc ggagggccga cgaggcagag gatgggaccg
      241 tcgatacgcc cgacgagtga cagcactgca atgaagtcga ggatgcgatc cttgacgtcc
      301 tgcaggccgt agtggtcctc gtcgaggata cggcgagcgt gcgcgacgtg aagcgtttcg
      361 gcggtgcgct cgtcccatgg gagtgcaccg atccagtcca gaaagttgcg cgacaccgtg
      421 tactcgggcg aggtcggcgc catgcgacgc agctttcgca gctcgcgctg cacgcgcatg
      481 cgcaccggct cgggaagcgc cttcgcctgg agcgacgatt cgagctcgct cacatcgtct
      541 gcgtcgtcct ggcccagctc gcgatggatg agcttgagct gctcctgcag atagaactcg
      601 cgctgtgtct gatacatcgc gccgcgcgtg tcgtcgtcga gcttgcgctc gatgcgcagt
      661 acttcgatct cgcccgcgag cagcacggtg atcgcgctga aggcgtcttc gagggtggcg
      721 gattcgagga tgcgctggcg cacttcgagt gacgccggaa cgtgcgcggc gatgccatag
      781 gcctgtcgct ccggcgtggc tgcgctctga accagggcga ccacttctga cggtatccga
      841 cgctgcagct cgacgtattc ctcgaacagc gtgactgcgc ggcgcgccgt ggcatccgtg
      901 agtcgcgcat cttcgtggcc ggacgcaacc agcggatcga gacgcacatc tgcgtggaga
      961 attccacgac gccggcgcac gaaccgcgtg acgcgtgcgc gctctctccc ttcgagcagg
     1021 accttgctgc tgccgttcgg cagtcggctc aactggatca cgcgtgcgat cacgcccgtc
     1081 cggaagagat ccggtccgcc cggctcctca tccgacgcgt cgcgttgcgc gacgagaaag
     1141 acgtcgccgg attcgagggc tgcctcgtcc agcgcaccga gcgatgatct ccgcccgatg
     1201 aggagcggca ttatgacatt cgggaagaac acgacgtcgc ggagcgcgag cacggggagg
     1261 gtgcgctccg acggtggcgt ctctatttcc ggctgggctg acatcggcgt cgcagtcggc
     1321 gcgggcggcg tcgcggggcg gggcgctgcc gctctggtgc ggccggtgcc gcgggcgcgt
     1381 ttttttgtgg atggcattac aggaaagcta gcagtcggag ggggcgcggg gatgacgggg
     1441 gcctggggat gcccgtcgtc gcaattccga cgatccgatc gatgacgacg cccgtcgcgc
     1501 gattccgacg caccgatcga tgacgacgtc gcgcgattcc gacgtcccaa tggataacga
     1561 cgtcgcgcga cgccgacgcc ccgatcgatg acgacgcccg taggggcagg cccccgtgcc
     1621 tgcccgccgt acgacgacga ccacgcacgc cacgatcgtc atgacgcgat cgttacgtca
     1681 cgatcgtgcc cgacggtagt tttttttacg atcgttcgcc acgacgccca cggcatcagg
     1741 gcgggcaggc acggggcctg cccctacaac gtccacgtaa ctacgcttcc ttcttgcgcc
     1801 tcacggggct caactccaac aacgggggcg tcttgttggt gatgcacgac tccgtgacgc
     1861 gcacttccac cacgtcctcg cgcgccggaa tgtcgaacat gacgtccatc aaggcctctt
     1921 ccaggatggc gcggaggccg cgggcgccgg tgcctcgctt gagcgccttg gtggcgactg
     1981 cggtgagcgc gctctcctcg aaggatatct tgacatcttc gagagcgaag aggcgctgat
     2041 actgcttggt gagcgcgttc ttcggctcct tgaggatgcg caccagcgac tcctcgtcca
     2101 gcgcgtcgag tgcgacggtt accggaaggc ggccgaccag ttccgggatg agcccgaagc
     2161 gcagcaggtc gtcaggctcg acattcgcga aggtgttctt ggaagcggcc tgtttggcat
     2221 cactgtcgcc aaagccgatc tgacgccgac ccatccgtga ctcgatgatc ttctcgagac
     2281 cgtcgaaggc accaccgcag atgaacagaa tgtccttcgt gttgatctgg atgtattcct
     2341 gttgcggatg cttgcgtccg ccctgtggcg ggaccgatgc cacggtgccc tcgatgatct
     2401 tgaggagcgc ctgctggaca ccttctcccg acacgtcgcg cgtgatgctg gggttctccg
     2461 acttgcgcgc aatcttgtcg atctcgtcga tgtagacgat gccgcgctcg cagtcgttga
     2521 cgttgaagtc gccagcctgc agcaggcgca ccaggatgtt ctccacgtcc tcacctacgt
     2581 agcccgcttc tgtaagcgtg gtcgcgtctg cgatcgtgaa tggaacgtcg aggattctcg
     2641 cgagcgtgcg cgccagcaaa gtcttgcccg taccggtggg gccgatgagc agaatgttgg
     2701 atttgtcgag ctcgacctcg tcgtccttta cagcagcagc gttgatgcgc ttgtagtgat
     2761 tgtacaccga aaccgagagc gccttcttcg cctgttcctg acctatgacg tactggtcga
     2821 gaacgtcctt gatttcctgc ggcgagggaa cctgcgtgat cgcatcggct acctcgcgtt
     2881 cctcatcctc ctgcaggatc tcgttgcaga gagcgatgca ctcgttgcag atgtagaccg
     2941 agggcccgga gatgaatttc cggaccgagt cctttgactt gccgcagaac gagcagcgta
     3001 ggtgtttatc ggtggacata tctgtttgaa agcaaatacc cgggcgtggc gcggtcaacc
     3061 attcctaacg ggtatcgggc ttgtgaatta attcacaagc ctcggccgcg ctgataccgg
     3121 cattacccgt ggtcattcca gcggcgcgga ttcgcgtaga tgtattcccg cacccgctgc
     3181 agcgacgggt aattgcggat gatgcgttcg tagtaattcc gttgccagac cacgccgccc
     3241 cgcgttccgc gtaattgatt gatctggcgg gacaccgcgg atttgtacga accgacgatt
     3301 gcaccgacgg aatgtcgcgg tggaccatgg ggacgtatgg gcgacgaccg tgggggccac
     3361 gaccgtgggg gccacgcccg taggggcgac gcatgcgtcg cccctaccaa tgcgtcgtcc
     3421 ggtgccgatg cgttgtcggt tgccaatgcg tcgtcctgtg ccgccggagc gccggcgatg
     3481 acgatgatgc cgtgcacgtg atttggcatc acgacgaacg cgtccaatcg taccagcgga
     3541 aaatggaccg ggatcgcgta ccacgctgtt cgtgccgcca tgccggccgc gtttggatac
     3601 atgcagtcgc gcacaatttc gccaaacaag cagatgtgat cttgcgtatc gatcgtgacg
     3661 aaatacacgc caggcgcagc gtaatcgtac ccacgcagac gaatcgactt gcgatggtga
     3721 cgttcgcaat cgaacccgcg tgtcatcgcc ggcgcgatcg cgaccgcgaa tatggggaga
     3781 ccatacataa ttgtcacagc attcggcagg aatggtcgta tcactctccc gcacgaatca
     3841 ttgctgtggt gcgtggcttg gttgcggagt gtgcggtaca ccgccgtctc atccgcgtgc
     3901 ttcgggcgcg ttcccggtac ccagggcgac gcaatgaggg ggcggtcgac aactccgccc
     3961 cctcactgtt gcagcgtggt tcgcgcctac tactgctgtc taaacagtaa cctgcggctg
     4021 cgtcgacgag tcgatcacgt cgccccgatg tgttatcacc tggtcgatca gaccgtactc
     4081 cttcgcctcg tcggctgaga ggaaacgatc gcggtcggtg tcgcgctcga tgcgctcgag
     4141 cggctggccg gtgtgcttgg ccatcaagga gttgagcttc tcgcgcagga acagaatctc
     4201 cttcgcctga atctcgatgt ccgacgccga gccgccgccg ccgttctgcg acggttgatg
     4261 gatcatgatg cgcgagtggg gcagagcaaa ccgcttgccc ttgcgtcccg ccatgagcag
     4321 aaatgcgccc atgctcgctg ccattcccat gcacgtcgtg ttcacgggac tcttgaggaa
     4381 ctgcatcgta tcgtagatcg ccatgccagc ggaaacggag ccgcccggcg agttgatgta
     4441 catgtggatg tcgcgctcct gattgtccga ctccaggaac aacagctgcg cgatgatgac
     4501 gttcgcgacg tcgtccgtga ccggtgttcc gaggaacacg atgcggtcca tgagcagacg
     4561 cgagaagacg tcgtaggtgc gctctccacg agaagagcgc tcgatcacgt atggtgcgta
     4621 aatcggcatg actaggcctc tgtcacaatg tcgtttcttt caaccaacca cttgaacacc
     4681 ttgtcttcag tgatggtccg ttcaagatcc ttcaatcgcc cgcttttttc gagcgccgtg
     4741 taaagctgac cgggctcgac cccacgctcc gccgcctgct cggcgatcct gtcatcgaga
     4801 tcacgctccg aagctgcgag cttttcctgt tccgcgatcg cttcgacaat cagatcgcgc
     4861 ttgatctgac gctcggcgac ctgcgtgaac tcggtgtcga actgtgcgcg ctggtccggt
     4921 ggtacctggt aggtctccgc gtagttgtcg accagctgtc ccacccagct gcgtggaaca
     4981 tcgaatggat tggcggcgat tacctgatcg atcagaccct gacgtacatg cgcctcggat
     5041 tcgcgctgcg cgaacttctc catgtcctga cgcaccgctg tgcgaagtgc atcggcggaa
     5101 tcgaaatcgc caacctcgcg cgcgaatgcg tcatccagcg ttggaagtga tttgcgcttc
     5161 acctcgtgta ccgttgcgcg aactgtcttg gtctgaccgc gctgcgcctc ttcggggaaa
     5221 tcctccggcc agcgaaccgg acgctccact gtctcgcccg ggcccgcttc catgatcaac
     5281 tcctcgattc ctgcgattgc cttgccgtcg ccgagtacga gcgatacgtc gcgcggctcg
     5341 ccgagcttgc cttcgtcgtc tgcgacagag aggccgacgc tcaccatgtc tccctcgatc
     5401 ggcttgcctt cgacgggagc ccacgcggca cgctcgtcgc gcaggcggtc gatctgctcc
     5461 tggagctgtt cgtccgtgac ggtggtcggc tcgcgacgga ctttgaatcc gttggtgcgg
     5521 ccgagctcga ccgttggccg cacttcgtag tggaactcga aggtgagggg tgagccttct
     5581 tcgaatttga gatcgtggat gtgtggctgc gatgctacct ggatgttgtc cttttcgacg
     5641 atctccttgt aggcctcgcg cacgactgat tcgattgtct cgttccggat cgcttccgcg
     5701 aacttcttgc gcacgacggc cgctggtgcc ttgccgggtc tgaagccggg aaggcgcgcc
     5761 tgggaagcgt agcgcttggt tgtgcgttct tcagcggccg ccacttcggc ggccggaacg
     5821 gtcacttcta cggcgcgctc gacgccggtg gtggtcttgg gatttagttg gatctccatc
     5881 agggcaattt aaccacgcta cctacggatc atgcgcgtca gacgtcaggt attgccggtg
     5941 cgctcatgcc actgcgctca tgccggtgcg ctcatgccac cgcgcgatcg ctctgcccgg
     6001 agtccagcat gatctcgaac ttgcagcgcg atggcgtgcc atgctcacag cacgccagga
     6061 ccggcgcctg cacaatctcc gcgaccatgc tttcggcggc gttgcaggta atgggatgcg
     6121 cgcttacggc atcgcccagt gggcagtaga ggccgcggag gatgatcttg ccgttgattt
     6181 cctctatatc caccacgccg ccaagatcgc gcaatgcggc cgcagcagcc tcggcgcggg
     6241 aacggatcga tccggttgtc cggcctcgaa cttcggcaag ccgccgacct acttccgaga
     6301 ggacgctctc cagttccttc tgtggcaagc gttcgcgcag gacgcccagc aggccactta
     6361 gaaccgggcg agaggcgtcc gaaaggcccc ggcgggcatc cggcgtaagc tcatacgcgt
     6421 aagcaggcct ggtccccgtt ggacgagagc cgcgccgaat gacgagaccg tcgcgctcga
     6481 gcgccacgat gtgggcgcga accgcgttgt cggtgatctg gagcgctgtg gcgatctcgt
     6541 ccaccgtgcg cggctcacgc tggagtagcg cgaggacctt gcctctggtg gtttcgaaaa
     6601 acttgcgatt caagggcgcc atgcggccac cgtggaatga ggaacgtgcg caacgcctga
     6661 actgaaacgt atggaagtcc gcgcattagt caatattgtc aataatttat ttgacaattt
     6721 agcactctgt ctctagactc tcactgacgg acggtgtacg cagccagacc cttatacgag
     6781 cccgagagtt cgacctatga gtcagccggc atgagcgatc aagacgtggt actgagcggc
     6841 ccggacttca ccaagggtgt tcccatgcac agcctcggcg aggggcagtt ggttcagggg
     6901 cacgcggatg gcaagccggc gatgctgatt cgccgcggag aaacggtctt cgccgttggg
     6961 gcggtttgca gccattatgg cggtccgctc gccgaaggga tcgtggttgg cgatacggtg
     7021 cgctgcccgt ggcaccacgc ctgcttcagc ctcaaaaccg gcgaagctct ccgcgcaccg
     7081 gcattgcatt cgcttccgtg ctgggcagtg gaacagcgcg acggcaaggt ctatgtcacg
     7141 cacgaaatcg aaacgccgtc ggcagtggca cccaccggca gcgaagcccg gaaagcgcgg
     7201 tcggtcgtga tcatcggtgg aggagctgct ggcagcgcgg cggcggaaac attgcggcgc
     7261 gagggattcg cgggcagcat caccatggtc agcgcggacg atgacgcgcc atacgaccgg
     7321 cccaatatct caaaggatta tctggccggc accgcgccgg aggagtggat cccgctccgg
     7381 ccgcgctccg tgtacgagaa acaggggatc actctgcggc tcggggtccg cgccacggat
     7441 atcgatgtcg caaaacatgt cgtgcagttg agtgatggca gctcggtcgc ttatgatgcg
     7501 ctgctgctcg cgactggtgc gacgccggtg cgcctgccgc cgcgcatgga tccattgcag
     7561 cgggtcatgt atctgcggac gctggcggac tcgcgcgcga tcattgcggc ctgtgagcac
     7621 gccgggcacg ccgtcgtgat tggcgcgagt ttcatcggtc tcgaggtcgc tgctgcgctg
     7681 cgcacacgtg gtctccatgt cgacatcgtt gcaccggaac atcgcccgct cgaacgcatt
     7741 cttggcatcg agctgggtcg catcattcag cagatccacg aggaccacgg tgcgacattc
     7801 catctgggca atgcgctggc gtcggtcggc ggtgatcacg tgctgctggc gagtggcgag
     7861 cgactgcagg cggatcttgt aatcgccggg atcggtgtgc gccccgatct tacgctcgca
     7921 cgtgcggcgg gactgtcggt cgatcatggc gtcgttgtcg acgaattcct cgaaacgagt
     7981 acggcgggcg tgtacgccgc aggtgacatt gcgcaatgga ctgacacggt gagccgccac
     8041 agtcgcagaa tagagcactg ggttgtcgca gagcgtcagg gagcggcggt cgcgcacaac
     8101 attgtcgcgc gttttgaagg cacgccacgc gagccgttca tcgcagtgcc attcttctgg
     8161 agtgcgcatt acgacactac catctcctac gttggtcacg cggatagctg ggacgagacg
     8221 gaagtactcg gtgacttccg tgacggaacg atcgcggtga cgtatcgcag cggcggtcag
     8281 gaccaggcag ttgccacgat cgggcgcgac atactcagcc tcgatgctga aatgacgatg
     8341 gagcgcgctg ctgatacagc actgcagctt ggaatcgaga gcgattccac gctcgggcgc
     8401 cgcaaaccca tacccgcgtg agcggcctgg tacaaccaat gacgaatgca atgcagcgcg
     8461 gtgcgattca tctcgaaaca tctccgacgg acaacccgct ggagatggag cttctggtgc
     8521 accgtcagct cgaattgctg ggcgaggatc cggatcgcga cgggttgctc aagactcccg
     8581 agcgcattgc caaatcgctc gcgtggctta cgcgcggtta tgacatgaac ctcgccgata
     8641 tcgttggcga cgcggtattc gaggagcgcc aggagaacat ggtgatggtt cgcgacatcg
     8701 agctgtattc tctgtgcgag caccacatgc ttccgttctt tggaagagcg cacgtagcct
     8761 acatcccgga tggcaggatc attggactct ccaagctcgc gcgaatcgtc gatatgtttg
     8821 cgcgccggct tcaggtgcag gagcggctca cggaagaaat cgccgaagcg atctgcgaca
     8881 tattgaagcc gcgtggtgtt ggtgtggtga tcgaggcgtc ccacctctgc atgatgatgc
     8941 gcggagtgca gaagcagaac tccacgacaa tcacgagcgc tctgcgggga aacttccgtg
     9001 acgatccaaa gacgcgtgac gaattcctgc ggttggcgca gggccgtggc agtggatcgt
     9061 tcaacggcgg catctgaata cccttatcgg gcgtttccag catcatccca accgttattt
     9121 gcctggcgcg gagaacggca gggatagtcc gaccaacatg ccaccttcag gaccaggctg
     9181 gagcatcacg cgctgcgcga tgcggccgat cgcgccgtgc tttccggcgt gatgtacgtg
     9241 gctttcgaca gagaggccgc tccatgtgcc aatagcggct gccagcggca ggtcactgac
     9301 ccaatgtacg tgctgataca ggcgggcgaa tccgattgcg gaggcagtaa tgtaggaaaa
     9361 tgggcctacg tagcgcgcga gccccggacg ccatgctgca gtctctcccg tgagtgcaga
     9421 agccattgca aacgctgccg cggtgtgacc tgaggggaac gagacgaacg gtccgtttcc
     9481 cctgtggaac ccgcgtgccc attcgaagtt ctcagatgtc ttcacaccgg ggagtgcgcg
     9541 tccggctatc ccttttccca acgcagtaac tccagctgct agcagtactg cctctgtgac
     9601 atgcgtgcca acgcgcgaga gccccggatt accgccgaga tggccagccg caaagaaccc
     9661 tgcgccgacg agaaacggac ccgggccgcc agcaaatgca agcgcctgac tggcgctgtg
     9721 caggggctcg tccttttgcc agccggcctc ctgaagctcg gccgagaccg gcttgtccag
     9781 gggtgctacg gcgatggtgg ccagtacgga tattccacc
//
LOCUS       DATIMD010000147         3294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2364966, whole genome shotgun sequence.
ACCESSION   DATIMD010000147 DATIMD010000000
VERSION     DATIMD010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3294
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2364966"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1733
                     /locus_tag="VLI40_03335"
     CDS             <1..1733
                     /locus_tag="VLI40_03335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96233.1"
                     /translation="VGDAVPLPDWTRFGADPSTIPTQCANGGGVLAERASSVSLIDPK
                     FDVPHSWRASLDWSTNMHKFLVKVSGLASYDLAQPGSVDANFSGVQRFALGTEGNRPV
                     FVSAAAIDPASGAVSAVEARRSSAYGRVGVRTSDLRGYGGQLTTTISPDLFKLRFHPG
                     VSFFTSLSYTLQESRRQFRGFDGAAFGDPRLTEWAPSNNDARNIFVYTLGLYTQKTGA
                     LTLFTRVQSGLPFTPIVQGDVNGDGLSGDRAFIPNPALVGDTALSGQLRSLMANGSSS
                     ARKCILDNLGRAATRNGCRGPWTAMLNLQWSPPFPRRWLGRVTPNVYFENVLGGVDQL
                     LHGSSGLRGWGGQPVVDPVLLVPHGFDPVSKSFKYAVNPRFADTRPINTLTRNPFRIT
                     LDFSFDLSVNYNLQELRRAIEPVKGPHGYARRTADSLAAFYLSRTSSIHKLLLANSDS
                     LFLTKPQIAALQHDDSVYSAQVRAIYVQLGSFLAQHEGRDPGKAELDSVKNTSKTYWK
                     IFWRQPEIADSAVTPAQRELMPMFKNMLAVTPKDREQSQWNFQYPVTYSDKARQPAQT
                     GGSQSIRVSH"
     gene            complement(1811..2002)
                     /locus_tag="VLI40_03340"
     CDS             complement(1811..2002)
                     /locus_tag="VLI40_03340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96234.1"
                     /translation="MPAFDGRSAPVPDPTLNLAWFERSSVEEVSAPEKAPAEGNGALL
                     DRVREAEGLVYNGEGDYEN"
     gene            complement(2283..>3294)
                     /gene="ispH"
                     /locus_tag="VLI40_03345"
     CDS             complement(2283..>3294)
                     /gene="ispH"
                     /locus_tag="VLI40_03345"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015968 - stringent response [Evidence
                     IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HSU96235.1"
                     /translation="KKFPDKKIYLAGEIIHNPHINRRLSEAGVIFLKHNANTNEASFD
                     FGIVNPEDVVLLPAFGVTVADFATLRERGCVMVDTTCGSVLNVWKRVESYARDGYTAL
                     IHGKFYHEETRATASQVMKYPGGQYLIVRDMDEVRIVCDFLEGKRGADEIRAKFAPHA
                     ASPEFDPDRDLKRIGVANQTTMLASESLAIAAETQAAMARGHGDEYAGANFRTFDTIC
                     SATQDRQDAVQEMLLDPPDIMVVVGGYNSSNTISLAALCADRVPTYHIEDATCIDVEA
                     RVIHHRLRQGRDDVATPGWLPETGDVVVGITAGASTPNNKIAETVARIFATRGVDTAT
                     IR"
BASE COUNT          583 a         1058 c         1009 g          644 t
ORIGIN      
        1 gcgtcggcga cgcggtgccg ctgcccgatt ggacgcgctt cggcgccgac ccgtcgacga
       61 tcccgacgca gtgcgcgaac ggtggcggcg tgctcgccga gcgtgcgagc agcgtgtcgc
      121 tgatcgatcc gaagttcgac gtgccgcaca gctggcgcgc gtcgctcgac tggtcgacga
      181 acatgcacaa gttcctcgtg aaggtgagcg gcctcgcgtc gtacgacctg gcgcagcccg
      241 gcagcgtgga cgcgaacttc tccggcgtgc agcgcttcgc gttaggcacc gaagggaacc
      301 ggccggtgtt cgtgtccgcc gcggcgatcg atccggccag cggcgcggtg tcggcggtgg
      361 aggcgcggcg gtcgagcgcg tacgggcgcg tcggcgtgcg aacgagcgat ctgcgcggct
      421 acggcggaca gctgaccact acgatttctc ctgatctatt caagctccga ttccatccgg
      481 gtgtctcatt cttcacgtcg ctatcgtaca ccctgcagga gtcgcgtcgg cagttccgcg
      541 gattcgacgg tgccgcgttc ggcgatccgc gtctcaccga atgggcgccg tcgaacaacg
      601 acgcgcgcaa catcttcgtg tacacgctgg gactctacac gcagaagact ggcgcactca
      661 cactctttac tcgcgtgcaa tccggactcc cattcacgcc catagtgcag ggcgacgtga
      721 atggagacgg tctcagtggc gaccgcgcgt tcattccgaa tcctgcgctg gtgggtgata
      781 ccgcactgtc cggtcagttg cgctcgctca tggccaacgg ctcgtccagc gcgcgaaagt
      841 gtattctcga caatctcggg cgggcggcga cgcgtaacgg ctgtcgtgga ccgtggactg
      901 cgatgctcaa tctccagtgg agtccgccgt tcccgcgccg ctggctcggc cgcgtcacac
      961 cgaacgtcta tttcgagaac gtcctgggcg gcgtcgatca gctgctccac ggcagcagtg
     1021 gattgcgcgg atggggcggc cagccggtcg tcgatcccgt tctgctcgtt ccgcacggct
     1081 tcgatcccgt atcgaagagc ttcaagtacg cggtgaatcc gcgcttcgca gatacccgtc
     1141 cgatcaatac gttgacgcga aacccgttca ggatcaccct tgatttctct ttcgaccttt
     1201 ccgtcaacta caatcttcag gagctgcgcc gcgcgatcga gcccgtgaaa ggaccacacg
     1261 gatacgcgag gcggacagcg gattcgctgg ctgcattcta tctgtcacgc acatcgagca
     1321 tccacaagtt gctgttggcg aacagcgatt cgctcttcct aaccaagccg cagatcgcgg
     1381 cgctccagca cgacgattcg gtgtactcgg cccaggtgcg cgcgatctac gtccaactgg
     1441 gaagcttcct cgcgcaacac gaaggtcgtg atccaggcaa ggcggagctc gacagcgtca
     1501 agaatacgag caagacgtac tggaagattt tctggcggca gccggagatc gccgactcgg
     1561 cggtgacgcc agcgcaacgt gagctgatgc cgatgttcaa gaacatgctg gccgtcacgc
     1621 ccaaggatcg cgagcagagc cagtggaact ttcagtaccc cgtcacctat tcggacaagg
     1681 ctcgccagcc tgcgcaaacc gggggatcac agagcattcg ggtgagtcac tgaatcacac
     1741 caaaaaacag ggccgcgctc gtcacgcggc cctgttgttc ctaccgatcc tgcatcacgc
     1801 cacggacgat tcagttttcg taatcgccct ctccgttata caccaacccc tcggcttcgc
     1861 gaacgcggtc caggagcgca ccatttccct cggcgggcgc cttttccggt gccgagactt
     1921 cctcgacact gctgcgttcg aaccacgcca ggttcagcgt gggatccggg actggtgcgc
     1981 tgcgcccgtc gaacgcgggc aacgctccga aatccatctt cccccctggg agaatcgggt
     2041 gcgcacagtc gtgcacaccg tcggtacacc ggcgcataat aacaagtttc gcgccagtga
     2101 ccaggaactt tagcgccggc gttgcacttg tgtagatgcc cctcaaaaca gtgaccctgc
     2161 tggtacgatt ccgtcacatg tcggggttgt cggttgtcgc tatttatgac tgggcacgag
     2221 cggtgtgcgg attcgacacg ggttgtgtgt cggaagggcc ccgtgccgcg cctgatggcg
     2281 tgctacctta tcgtcgccgt gtccacgccg cgcgtcgcga atatcctcgc aaccgtctcg
     2341 gcgatcttgt tgttcggcgt actcgcaccc gcggtaatcc ccacgaccac gtctccagtc
     2401 tccggcagcc agcccggtgt ggcgacgtcg tcgcggccct ggcgcagacg gtggtgaatc
     2461 acgcgtgcct cgacgtcgat gcatgtggcg tcttcgatat ggtaggtcgg aacccgatcg
     2521 gcgcacagtg cggcaagcga gatcgtgttg ctcgagttgt agccgcccac cacgaccatg
     2581 atgtccggcg ggtcgagcag catctcctgt acagcatcct gccggtcctg ggtcgccgag
     2641 cagatcgtgt cgaaggtgcg gaaattcgcg cccgcgtact catcgccatg tccacgagcc
     2701 atcgccgcct gcgtctcggc ggctatcgca agactctcac tcgcaagcat ggtggtctga
     2761 ttcgccacgc cgatccgttt gagatcgcga tccgggtcga attcgggtga agcagcgtgc
     2821 ggggcaaatt tggcgcgaat ctcgtcggcg ccgcgcttcc cttccaggaa atcgcagacg
     2881 atgcgcacct cgtccatgtc ccggacgata aggtactggc cgcccggata tttcatcacc
     2941 tgcgacgccg tggcgcgcgt ctcctcgtga tagaacttgc cgtggatgag cgcggtgtag
     3001 ccgtcacgcg catagctctc cacgcgcttc cacacgttca ggaccgaccc gcaggtggta
     3061 tccaccatca cgcagccgcg ctcgcgcagc gtggcgaaat cggccaccgt cacaccaaag
     3121 gccggaagca ggactacatc ttccgggttg acgatgccga aatcgaacga cgcctcgttg
     3181 gtgttggcgt tgtgcttgag gaagatcacg ccggcttcgc tcagccggcg gttgatgtgc
     3241 ggattgtgga tgatctcgcc cgcaaggtag atcttcttgt cgggaaactt cttg
//
LOCUS       DATIMD010000148         1533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4097446, whole genome shotgun sequence.
ACCESSION   DATIMD010000148 DATIMD010000000
VERSION     DATIMD010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4097446"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..965
                     /gene="ftsA"
                     /locus_tag="VLI40_03350"
     CDS             <1..965
                     /gene="ftsA"
                     /locus_tag="VLI40_03350"
                     /inference="COORDINATES: protein motif:HMM:TIGR01174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HSU96236.1"
                     /translation="INGDEITKADVDRANAVARAQAIPQDRELLHAIPQEYTVDKNHG
                     IRDPIGMIGTRLETEMYLVTIGSSPAMNLRKAVEKAGYKVRELVLEPLASALSVLTED
                     EKELGVALVEMGAGTTDIAVFHEAKIRHLGTVNFGGNNVTSDIVHGLGVTQADAERLK
                     ERYGCAYEPMVDPSEIIQLPSTVAQGDRQIPRELLAHIIHQRMDEIFDLVQRDIAGAG
                     YAGKLSAGIVLTGGAAAMQGVVELASDVFGTGVRVGVPGENIGGLADSVEAPRFATVT
                     GLAQYAAHRFALVGAGVGGKRLALNAPGMDRLAQRVKTWLQDFF"
BASE COUNT          297 a          445 c          480 g          311 t
ORIGIN      
        1 cgatcaacgg tgatgagatc acgaaggctg acgtcgatcg cgcgaatgcc gtcgcgcggg
       61 cacaggcgat tccgcaggac cgtgagctcc tgcacgcgat cccgcaggaa tacaccgtcg
      121 acaagaatca cggcatccgt gatcccattg gcatgatcgg cacgcgtctc gagaccgaga
      181 tgtatctggt gacgatcgga agttcaccag cgatgaatct gcggaaggcc gtcgagaagg
      241 ccggctacaa agtgcgcgag ctcgtgctcg agccactcgc cagcgcgctg agcgtgctca
      301 ccgaggacga gaaggagctt ggcgtcgcac tcgtcgagat gggtgcgggc acgacagaca
      361 ttgctgtttt tcacgaggcg aagatccgcc acctgggaac cgtcaatttc ggcggcaaca
      421 acgtcacgag cgacatcgtt cacggactcg gcgtcacgca ggcggacgca gagcggctca
      481 aagagcgcta tgggtgcgcg tacgagccga tggtggatcc gtccgagatc attcagcttc
      541 cgagcacggt cgcgcagggc gatcgtcaga ttccgcgcga gctgctggcg cacatcattc
      601 atcagcgcat ggatgagatc ttcgatctcg tgcagcgcga catcgctggt gctggttacg
      661 cggggaagtt gagcgccggc atcgtactca ctggcggcgc ggccgccatg cagggtgtcg
      721 tcgagctcgc gagcgatgtg ttcggcacag gcgtgcgcgt tggcgtacca ggcgagaaca
      781 ttggcggcct cgccgattcg gttgaggcgc cgcgtttcgc aacggtgacc ggactcgcac
      841 agtacgcggc gcatcgcttc gcgctcgtgg gcgcgggcgt tggcggcaag cgactcgcgc
      901 tgaacgcgcc cggcatggac cgactcgcgc agcgcgtcaa gacgtggctg caggatttct
      961 tctaagacat tcactcgagc gttcgcccga gcgtccgctt ttacccggcc actccgtaag
     1021 tgatgtcatt gctcacttac gtcgagaatg acacggcggc tgcagcgata gttgacaatt
     1081 agtcgtatct cacgtgtgca gttcgcggct gagacgcgca tctgacgcca ccgtcgctat
     1141 cgtgatggtg gcgtcgatgc atcagggcgc ctgcaacaat cggcagtcgt gcgagaacat
     1201 tcgtgagatg atgtcgtctt cctcgatgac agcgtcgaca tttgttatgt cattagtcgt
     1261 tcggtgcaac tacgagtgac ggtgaccttc attggcggat gtcaaaaaca tttctgcgcg
     1321 cgaacggctg tggaaaacgc gatacgaaat ctgtgtaatc tttcgcacga tcactcgtca
     1381 tgcaccgtag ctatgagggc aaatcgcgtt atattggacc cgcacttctc gccgttcgtg
     1441 ctgccgtcgc gcaccacgca gcgcccgcta caacgcctcg tcgtttgcag ttcatcgcag
     1501 tgatcccccg ggtgatctgt tgttcatctt tgt
//
LOCUS       DATIMD010000149         5166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4678654, whole genome shotgun sequence.
ACCESSION   DATIMD010000149 DATIMD010000000
VERSION     DATIMD010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5166
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4678654"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            57..458
                     /locus_tag="VLI40_03355"
     CDS             57..458
                     /locus_tag="VLI40_03355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96237.1"
                     /translation="MNLLFSAHSGLRYIVLLAGVAALAALAYSVATGRSMRPARIMSN
                     SFAGLLDLEVVLGIALVMGGIFPDAVTGHLMLMLLAAIVTHAAIVVGQQSSSERRELG
                     IRLGGIVLALVIIFAGIMAIGQSILGYSALR"
     gene            510..2102
                     /locus_tag="VLI40_03360"
     CDS             510..2102
                     /locus_tag="VLI40_03360"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HSU96238.1"
                     /translation="MSPTRREALAQIAALVALPIPLSRWTFTTANDPLDGTIADYQAG
                     RRRGEWTAVEVTARALERCRTDGAAWRAIDALASTASADARAADERLRTRRTRGPLDG
                     VPVFAKAIYDVAGLPTTGSNAEWARLFPDPVLRDALEVSRMRAAGAIVLGKTAADDFA
                     YRGNGTSSHTGQVLNPYDRTGTRTPGGSSAGSAVSVAGGLAFAAVGTDDGGSNRIPAQ
                     FTGVVGMKPTFGLVPRTGVIPTWPYLDTHGPLARSVADAALLLAAIAGPDASDPLALT
                     SAWNGAPLATLRDDALSGVRLALVNAHVPRAQMTAEALAIWDRAVADLRAAGATVEAY
                     DSPVTLANYRDAFAAAAHDRGDVAPNSRSPAPTANALYRYFAGRTDDPRAAVSRDYAA
                     YRAFYDVLPATFAECESLLEQPMEKDPAGQSFARSRATVVATLAASMRAGGFAAMVYP
                     TMPFNAPRAVDPWPDIRTTLGYGNWLGLPEVSVPAGLGADGMPALNVSIVGLPGDDAR
                     VLALAHAYERQSRRFVAPPRAH"
     gene            complement(2167..2829)
                     /locus_tag="VLI40_03365"
     CDS             complement(2167..2829)
                     /locus_tag="VLI40_03365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96239.1"
                     /translation="MPSNPSTFALALPSTLATLTGAGAAILGGWASAHFTARQARRRE
                     AQARDERRRVLASLLIDELTNIEVALGSFPTAITRRRFRPLPDTPVLDRMLAIADAFD
                     APTVITLLSVREMVRAHRRVSKDCHALFRRYRRQPESGQREDAERNLLEVVAGATDTA
                     AEVQRTAVATLLDLGGIATSGDDGTATRRYTSGAVEDTLRWTAVHPTVKLHGQVQRHT
                     QS"
     gene            2943..4283
                     /locus_tag="VLI40_03370"
     CDS             2943..4283
                     /locus_tag="VLI40_03370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96240.1"
                     /translation="MRSPLRLLLPVSLLSLAPRAVTAQAVVDSSLAAYVASIRAIDTH
                     AHPMRPVAIGAPPDSEYDALPLDGIPPFGFPHRLTTDDPVWQRAQLALYGIPIAMPDS
                     ARKLALDAAVKRNITKRGLHFPDWALDQAGVDVMFANRIAIGPGLGPPRFRWIAFVDA
                     LMLPLDTRAEGRTPDTRVLYPKENKLLRRYLHDLGITHVPGTLTEYVRGVVTPTLRRQ
                     RAAGAIAVKFEAAYLRPLDFDDPDSALAARVYAHYSAGGTPTHAEYKALEDYLFRVIA
                     REAGRLGMSVQIHSLETFGSYYQSAGAAPHLLEAAFNDSTLRGTNFVVIHGGWPLVNE
                     TQALLAKPNVYTDISAMDLILSPTELARVLRQWLGEFPDKVLYGSDAFDGGTGQGWEQ
                     VAWVGSTTARRGLDIALTGMMRDGEISRSRAEALARMVLRENAIAAYRLSGVSR"
     gene            4302..>5166
                     /locus_tag="VLI40_03375"
     CDS             4302..>5166
                     /locus_tag="VLI40_03375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96241.1"
                     /translation="MPHRAALTAAVCTVVCVACALSSCNGGGSSNESAASYAGVDARG
                     IPHYLTMRLSRADSMVLRRAYGIEDYHRLHVSDSTAQGILEYDTQVKRCRNCYVNSYN
                     VGYISVRRPGESWEQVERRVRSTPAAVFGRAAPPPSQSTATLDPDIRPIVEAMLRDAR
                     AAGFQLRVIATYRSPLTEAYLMASDARRTHTLTSNHSYGRALDIVIDDGNRAHARTKH
                     DWIAFRRWVTHYRTTTGESFRVLGALDRTWDWPHVELPSSKLRFGNVEQAIARGRDCL
                     TPGATITCDFPP"
BASE COUNT          913 a         1676 c         1627 g          950 t
ORIGIN      
        1 gctgcgacga cggtccagcc tgcccagatc cggatcgctc gcactgaaat cgccacgtga
       61 acctcctctt ctccgcccat tccgggcttc gttacatcgt tttgcttgcc ggcgtcgcag
      121 ctctggccgc gctcgcgtac agcgtcgcga ccggtcgctc gatgcggccc gctcgaatca
      181 tgtcaaactc gttcgcgggg ctgctcgatc tcgaagttgt gcttggcatc gcgctcgtca
      241 tgggcgggat ctttcccgac gcggtgacgg ggcacctcat gctgatgctg ctcgcggcga
      301 tcgtcactca tgcggccatc gtcgtcgggc agcagtcgag cagcgagcga cgagagctcg
      361 gcatccggct tggcggcatc gtactggccc tggtgatcat cttcgccgga atcatggcga
      421 tcgggcaaag cattctggga tactccgctt tacgatagag gacgttggtc ctccacgctt
      481 cccttcacct cgatcttcac cgtcacgcca tgtctccaac cagacgcgaa gcactcgcac
      541 agatcgcggc actcgtcgca ctcccgatcc cgctttcgcg ctggacgttc acaaccgcta
      601 acgacccgct cgacggtacc attgccgact accaggcagg tcgtcgtcgc ggcgagtgga
      661 cggcagtgga ggtcacggcg cgcgcactcg aacgttgtcg caccgacgga gcggcgtggc
      721 gcgcgatcga tgcgcttgcc agcacggcgt cagccgatgc gcgagcggcg gatgagcgac
      781 ttcggacgcg acgcactcgc ggtccgctcg acggcgtgcc tgtcttcgcc aaggcgatct
      841 acgacgtggc tggcctcccc acaacggggt cgaacgccga gtgggcgcgg ctctttccgg
      901 atcccgtgct gcgtgatgcg ctcgaagtat cacgcatgcg cgcggccggt gcgattgtac
      961 tcggcaagac cgccgccgac gatttcgcat atcgtggcaa cggcaccagc agtcacacgg
     1021 gccaggtgtt gaatccgtat gatcgcactg gaacacgcac ccccggcggc tcgagtgcag
     1081 gctccgcggt gtcagtcgct gggggattgg cattcgctgc agtaggcact gacgatggcg
     1141 gatccaaccg catccccgca cagttcacgg gtgtcgtggg gatgaagccg acgttcgggc
     1201 tcgtgccgcg caccggtgtt attcccacgt ggccgtatct cgacacgcac ggaccgttgg
     1261 cgcgcagcgt cgccgatgca gcactgctcc ttgcagcaat cgcgggccct gacgcttcgg
     1321 atccgcttgc gctcacgagc gcatggaacg gcgcgccact ggccacgctg cgcgacgacg
     1381 ctctgtcggg cgtgcgactc gcacttgtga atgcgcacgt tccacgcgca cagatgacgg
     1441 ccgaagcgct cgcaatatgg gatcgcgcag tagccgatct gcgtgctgca ggtgcgacgg
     1501 tcgaggcata tgattcaccc gtcacgctcg caaactatcg cgatgcgttc gccgcagcgg
     1561 cgcacgaccg cggcgatgtc gcgccgaatt cccgatcgcc ggcaccgacc gcgaacgcac
     1621 tctaccgcta cttcgccggc cgcaccgacg acccgcgtgc agcagtgagc cgcgactacg
     1681 ctgcgtaccg cgcgttctac gatgtgctac cggccacgtt cgccgagtgc gagtcactgc
     1741 tcgagcaacc gatggagaaa gatcccgctg gtcagtcatt cgcgcggtca cgcgcgacag
     1801 ttgtcgcaac gcttgctgcg tcgatgcgcg ccggcggatt tgcggcgatg gtctatccga
     1861 ccatgccatt caatgcgccg cgcgccgtcg atccgtggcc cgacatccgc accacactcg
     1921 gctatggcaa ctggctcggc ctgccggaag tgtcagtacc ggcgggactc ggtgccgatg
     1981 gcatgccggc gctcaacgtg tcgatagttg gactgccggg tgacgatgcg cgcgtgttgg
     2041 cactggctca cgcgtacgaa cgacaatcac gccgattcgt ggcaccgcca cgggcgcact
     2101 agcagcaggc aaaagtggcc gtaccgtccc catggatgcg gccacgaggc aggttacgcc
     2161 gcgctgtcag gactgcgtat ggcgctggac ctgcccgtgt aacttgacag tggggtggac
     2221 ggcggtccag cgaagcgtat cctccaccgc acccgacgtg tagcgacgag tcgcagtgcc
     2281 gtcgtccccg gaggtcgcga ttccacccag atccagaagc gtagcgaccg cagtacgctg
     2341 cacctccgcg gcggtatccg tcgcgccggc caccacttcg agcagattac gctcggcgtc
     2401 ttcacgctgg ccggattcag gctggcgccg ataacgccgg aaaagcgcat ggcaatcctt
     2461 ggacacgcgg cggtgcgcgc ggaccatttc gcgtacgctt agaagcgtga ttactgtcgg
     2521 cgcatcgaag gcgtccgcaa tcgcgagcat gcggtcgaga acaggagtgt ccggcagcgg
     2581 gcgaaatcgg cggcgggtga tcgccgtggg aaacgagccc aacgcgacct cgatgttggt
     2641 gagctcatcg atgaggagac tggccagcac gcgccggcgc tcgtcacgcg cctgcgcctc
     2701 cctgcgtcga gcctggcgcg cagtgaagtg cgccgaagcc cagcctccca ggatcgccgc
     2761 gccagcgccg gtgagcgtgg cgagcgtcga tgggagtgct agagcaaagg tgctcggatt
     2821 gctgggcatg ggtcggggat tgggtcttca aatcgccagt acgctggcgt gcgacgctaa
     2881 ttgatcgggc gcgacacctg ggcgcaagtg cgcgcggcgc aggacgtcgt atcttgtcgt
     2941 tcatgagatc tccgctccgg ttgttgctcc cggtgtcgct gctatcgctc gcgccgcgcg
     3001 ccgtcactgc gcaggcggtc gtcgactcat ctctcgccgc ctacgtcgcc tcgattcgcg
     3061 cgatagatac gcatgcgcat ccgatgcggc ccgtggccat cggtgcgccg cccgatagcg
     3121 agtacgacgc tcttcccctg gatgggattc cgccgttcgg attcccccac cgccttacta
     3181 cggacgatcc ggtctggcag cgtgcccaac tggcgctgta cggcatcccc atcgcaatgc
     3241 ctgacagcgc gcgtaaattg gcgctcgacg ctgccgtaaa gcgcaacatt acgaagcgag
     3301 gcctgcactt ccctgactgg gcgcttgacc aggcgggggt cgatgtgatg ttcgcgaatc
     3361 gcatcgcaat tggacccggc ctcggcccgc cacgctttcg ctggatcgcg ttcgtcgacg
     3421 cgctcatgct tccactcgat acacgtgcgg agggacgcac acctgatacg cgcgtgctct
     3481 atccgaaaga gaacaagttg ctgcgacgat atcttcatga tcttggcatc acgcacgtac
     3541 ctggcacact cacggaatac gttcgcggcg tcgtcacccc gacacttcgg aggcaacgcg
     3601 ccgccggtgc gatagccgta aagttcgagg cggcatatct gcgtccgctc gatttcgacg
     3661 atcctgattc agcgctggct gcacgtgtgt acgcacacta ctccgctgga ggcactccaa
     3721 cgcacgccga gtacaaggcg ctggaggatt atctctttcg cgtcatcgca cgcgaggcag
     3781 gacggctcgg aatgtcggta cagatccact cgctcgagac attcggcagc tactaccagt
     3841 cggccggcgc cgcaccgcat ctgctcgagg cagcgttcaa cgattcgacg cttcgcggca
     3901 ccaacttcgt cgtaatccat ggcgggtggc cattggtgaa cgagacacag gcactgctcg
     3961 caaagcccaa cgtctacacc gacatctccg cgatggacct cattttatcg ccgaccgagc
     4021 ttgcgcgagt gttgcgacag tggcttggcg agttcccgga caaggttctc tacgggagtg
     4081 atgcgttcga cggaggaacc gggcagggat gggagcaggt tgcctgggtc ggcagcacaa
     4141 ccgcaaggcg cggcctggac attgcgctaa caggcatgat gcgcgacggc gagataagca
     4201 gaagtcgcgc cgaggcgctg gcgcgaatgg ttctgcgcga gaatgcgatc gcagcatatc
     4261 gactctcggg cgtgagccgg tgatagatac aggttatgat agtgcctcat cgcgcagcgc
     4321 tgaccgcggc cgtatgcacc gtagtgtgtg tggcgtgcgc actatcttca tgcaacggcg
     4381 gcggatccag caacgagagt gcggcttcgt acgcgggtgt cgatgcgcgc ggtattccgc
     4441 actacctgac catgcgactc tcccgtgccg attcgatggt ccttcgacgt gcctacggta
     4501 ttgaggatta tcaccggctt cacgtttccg actcgaccgc gcagggtatc ctggaatacg
     4561 acacgcaagt gaaacgctgc cgcaactgtt acgtgaacag ttacaacgtc gggtatatat
     4621 cggtgcgaag gccaggtgag tcgtgggagc aggtcgagcg gcgcgtacgt agcacaccag
     4681 cggccgtatt cggtcgcgcc gcacctccgc caagccagtc gactgcaact ctcgaccccg
     4741 acatccgccc catcgtggag gcgatgctgc gcgacgcgag agctgcgggc ttccagcttc
     4801 gcgtaatcgc gacgtaccga tcaccgctca ccgaagcgta cctcatggcc agtgatgcac
     4861 gacggactca tactcttaca tcgaaccatt cctacggacg tgcgctcgac attgtgatcg
     4921 atgacggaaa tcgggcacac gcacgcacca aacacgactg gatcgcgttc cggcgctggg
     4981 tgacacacta tcgaacgacg acgggcgaat cgtttcgtgt acttggcgca ctggatcgta
     5041 catgggactg gccgcatgtc gagctgccgt cgtcgaagct acggtttggc aatgttgaac
     5101 aggccatcgc gcgcgggcgc gattgtctca cccctggcgc gacgattacc tgcgacttcc
     5161 cgccgc
//
LOCUS       DATIMD010000150         4048 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4966524, whole genome shotgun sequence.
ACCESSION   DATIMD010000150 DATIMD010000000
VERSION     DATIMD010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4048
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4966524"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1491)
                     /locus_tag="VLI40_03380"
     CDS             complement(<1..1491)
                     /locus_tag="VLI40_03380"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSU96242.1"
                     /translation="MTELHRRQILRGRRSECEALDSLLASVLANQSRVVVVRGEAGVG
                     KTALLDYVAEGASKCRIARAAGIESEMELAFAGIHQLCAPMLRRRRHLPDPQRRALDT
                     AFGLTLGEAPDRFLVGLAVLGLLSEVAEHRPLICIVDDVQWIDRASVQILAFVARRLL
                     AESIALIFALREPSDEQEFAGLPQMPLAGLGDVDAGALLDSAIPGRLDGRVRDRIIAE
                     TRGNPLALLELPRGLTVSQMAGGFALPDARPLERRIEQSFLRRFRALPIDAQQLLLVA
                     AADPVGDVTLLWRAAALIGIRTDAAAPAVAEGLIDLGARVRFRHPLVRSAIYRTAALS
                     DRHAAHRALAEAIDPVADPARRAWHRAQAAVGPNETFARELEQSADRAQKRGGSAAAA
                     AFLERAAELTCDPAQRGTRALAAAEAKFEAGAPHAAIELLAAAEIGPLNALQRARLAL
                     LRARITFARRRGSDAPPLLLDAAHKLEESNGQLARDAYLEAIGAAIF"
     gene            complement(1693..3009)
                     /locus_tag="VLI40_03385"
     CDS             complement(1693..3009)
                     /locus_tag="VLI40_03385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96243.1"
                     /translation="MSIHSRFFVVLTLAGGSLVAQSTLPPVRPLGQITVASPSEFASI
                     SSVRALSDGSVLVNDLTARKVTLLDPTLAHGTVIADSTSATSMAYSSRLGGLIAYHGD
                     TTLFVDPQSMSMLVLDGAGKVARVMSVPKAQDATFLIGGPFGNPGMDPSGRLVYRTML
                     QPKFVPPGPDGKTLAPVMADSAPIIRFDLGERRADTAGYIKVPAPRISINSSEGNVRV
                     TMQMNPLGITDDWALLPDGNIAIVRGADFRVDLLKPDGTVVKGEKIPFEWQRLNDSSK
                     QVIVDSARKIVEDARNRQLAIMQGSASSTTGSTSAAPSGGAVFRMRVEGGPPAAGAPA
                     TRSGGTSIELPPVEFVPLSEMPDYRPAFTAGAVRADADGNLWIRTSTMSKGAQVYDVV
                     NGSGQLIDRVQLPAGRTIAGFGKGGVMYLAVRDGTVGVRLEKARTK"
     gene            complement(3042..>4048)
                     /locus_tag="VLI40_03390"
     CDS             complement(3042..>4048)
                     /locus_tag="VLI40_03390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96244.1"
                     /translation="INGDGYSNDRAFIFDQRTSSDPVATAIHALMTSGSSEARHCLES
                     QLDRIARRNSCQGPWTSTASLSFAFNPLKVRLPQRAQLSFAVSNPLGAADLLLHGENN
                     LRGWGQFAIPDQTLLYVRGFDPASRSYKYDVNQRFGATNAAFSAIRAPVTLTAMLRID
                     VGPSRERQLLTQQLDRGRTQPGQKVSEMILKITHGSGDVPNPMTAILQQADTLHLTGR
                     QADSLATLNRSFSIKRDSIWNPVSKYLAALPDHYDQGDAYARYRHAREASVDLLLPLV
                     PKVRGVLTAAQLRLLPDYIRAYLDTQYLASIRSGTMGGGGNASLFPSPPGGGQTFIMR
                     "
BASE COUNT          775 a         1342 c         1206 g          725 t
ORIGIN      
        1 gaagattgcc gcgcctatcg cttcgaggta cgcgtcacgt gccagttgac cattcgattc
       61 ttccaacttg tgcgcagcat cgaggagcaa tggcggggca tcgctgccgc gcctgcgcgc
      121 gaacgtaatt cgcgcgcgca acagcgccag ccgcgcacgc tgaagcgcgt tcagcgggcc
      181 aatctccgca gcggcgagaa gctctatcgc cgcatgaggc gcgccggcct cgaattttgc
      241 ttccgcggct gcgagcgcac gcgtgccacg ctgtgcagga tcgcaagtca gctcggccgc
      301 tcgctcgaga aaggcagccg cggccgcgct gccaccgcgt ttctgtgctc gatccgcgga
      361 ctgttccaat tcgcgagcaa acgtctcgtt tggtccgacc gctgcctggg cgcgatgcca
      421 cgcccggcga gcaggatcgg ctaccgggtc gatcgcctcg gcaagtgcgc gatgtgcggc
      481 atgacggtca gacagcgccg ccgtacggta gatcgccgag cgcacgagcg ggtgtcgaaa
      541 tcgcacgcgg gcgcccaggt cgatcaaacc ctccgccacc gccggcgcag ctgcgtcggt
      601 gcggattcca atcagtgcgg cagcacgcca taacagcgtc acgtcgccta ccggatctgc
      661 agcagctaca agcagaagct gctgcgcatc gatcggcaag gcgcgaaatc gccggaggaa
      721 actctgctcg atgcggcgct ccagcggtcg cgcgtccgga agcgcgaacc cgcctgccat
      781 ttgcgatacc gtcaggcccc gcggcaattc cagcaatgcg agtgggttgc cacgtgtttc
      841 ggcgatgatg cgatcccgca cccttccgtc cagccggcca ggtatcgcgg agtcgagcag
      901 cgcacccgcg tccacgtcgc cgagacctgc aagaggcatc tgtggaagtc ccgcgaactc
      961 ctgttcatcg ctcggctcgc gcagcgcgaa tatcagggcg atcgattccg ccaggagacg
     1021 gcgcgccacg aatgcaagga tctgcaccga tgcgcgatcg atccactgca catcgtcgac
     1081 tatgcagatg agcggacgat gttccgccac ttccgacaga aggccgagca cagccagccc
     1141 gaccagaaag cgatcgggtg cctctcccag ggtcagcccg aacgccgtat cgagcgctcg
     1201 gcgttgcgga tcgggcaggt gccgccggcg gcgcagcatc ggcgcgcaca actgatgtat
     1261 gccggcgaac gcaagctcca tctccgactc gatgcctgcc gctcgtgcaa tccgacactt
     1321 cgacgcgcct tcagccacgt agtccagcaa cgcggtcttg ccgacgcccg cctcgccgcg
     1381 cacgactact actcgactct gattcgccag cacactcgcc agcaggctgt cgagcgcttc
     1441 gcactcgcta cgccggccac gcagtatctg tctacgatga agttcggtca tcccagccgc
     1501 ccaacagccg atcgctcatg ccgactcgtc tctcgctcgg caattccgaa cggtaactca
     1561 ggccccatca catgtcgaga gccagcatat gagtacggac aaaggcaaag gatctcgcgt
     1621 acgtacgcac ttgcggtcgg cgtccatgca gcggaggcaa tggctccgct gcatggacgc
     1681 ctgagcaact cgctacttcg tgcgcgcctt ctcgagtctc acgccaacgg ttccatcccg
     1741 gaccgcgagg tacatgacac cgcccttccc gaaccccgcg atcgtgcggc cggcgggcaa
     1801 ctgcacgcgg tcgatgagtt gcccgctgcc gttcaccacg tcgtagacct gcgcaccctt
     1861 ggacatggtg gaggtgcgaa tccacagatt tccatctgcg tcggcgcgca ccgcgccggc
     1921 ggtgaatgcg ggccggtagt ccggcatctc cgagagcggc acaaactcaa ccggcgggag
     1981 ttcgatcgat gtccctcccg accgtgtcgc aggcgcgccc gctgccggcg gcccgccttc
     2041 gacgcgcatc cggaacacgg ctcctccaga cggtgctgcg ctcgttgatc ctgttgtcga
     2101 tgacgcactt ccctgcatga tcgcgagctg acggttgcgc gcatcttcca cgatcttgcg
     2161 cgcggaatcg acgattacct gcttgctcga gtcattcaat cgctgccatt cgaaagggat
     2221 cttctcgccc tttaccaccg tcccatcagg cttcaacaga tcgacacgaa agtccgcgcc
     2281 gcgcacgatg gcgatgtttc cgtcaggcag gagcgcccag tcgtcggtga tgcccaacgg
     2341 gttcatctgc atcgttaccc gcacgttccc ttcactggag ttgatactga tgcgaggtgc
     2401 aggcaccttg atgtaaccgg cggtgtccgc gcgacgctcg ccgagatcga acctgattat
     2461 cggcgcggaa tccgccatga ctggagcaag ggttttgccg tcaggtcccg gcggcacgaa
     2521 tttcggctgc aacatggtgc gatacacgag acgtcctgac gggtccatgc caggattgcc
     2581 aaacggtccg ccaatcaaaa atgtcgcatc ctgcgccttc ggtaccgaca tcactctcgc
     2641 gaccttgccc gcgccgtcga gcaccagcat cgacatcgac tgcggatcca cgaacagcgt
     2701 cgtatctcca tgatacgcga tgagaccacc gagccgggag ctgtacgcca tcgacgttgc
     2761 gctcgtcgaa tcggcgatga cagttccgtg tgcaagcgtg ggatcgagca gcgtgacctt
     2821 tcgcgcagtc aggtcgttca ccagcacgct tccgtccgat aacgcgcgca ccgacgatat
     2881 gctcgcgaac tcggacggag atgcgacggt aatctgcccg aggggcctta ccggcggcag
     2941 cgtactctgc gcaacgagag aaccgcccgc cagcgtcagg acgacaaaaa agcgtgaatg
     3001 gattgacatg atcgagttcc ggttaacgat ggcggcgcgc gtcatcgcat gatgaatgtc
     3061 tgaccgccgc ccggtggcga tggaaagaga ctggcattac cgccgccacc catcgttccc
     3121 gagcgaatcg atgcgagata ctgcgtgtcg aggtatgcgc gtatgtagtc cggcagcaat
     3181 cgcagctgtg ccgctgtaag cacgccccgc acctttggaa ccagtggaag cagcagatcc
     3241 accgaggcct cacgtgcgtg acggtaccgt gcgtacgcat caccctgatc gtagtgatcc
     3301 ggtagcgccg ccaggtactt cgaaacggga ttccatatcg agtcacgctt tatggagaac
     3361 gagcgattga gcgtcgcgag actgtccgcc tggcgcccgg tgagatgcag cgtgtcggcc
     3421 tgctgcagta tcgccgtcat cggattgggc acgtcgccgc tcccatgcgt gatcttgaga
     3481 atcatctcgc tcaccttctg acccggttgc gtgcgtccgc ggtcgagctg ctgcgtgagc
     3541 aattggcgct cacgcgacgg cccaacatcg atccgcaaca tcgccgtaag cgtgaccggc
     3601 gcacgaatcg ccgagaatgc tgcgttcgtc gcaccgaagc gctgattgac atcgtatttg
     3661 taactgcgcg acgccggatc gaaaccgcga acgtaaagca gagtctgatc cggaatcgcg
     3721 aattgccccc agccacgcag gttgttctcg ccgtgcaaca gcagatccgc cgcgccaagt
     3781 ggattggata ccgcaaacga caactgcgcg cgctgcggaa gcctcacctt caacgggttg
     3841 aacgcaaacg atagcgaagc cgtcgatgtc cacggaccct ggcagctgtt tctacgcgcg
     3901 atccgatcca gctgcgactc gagacagtgc cgcgcttcac tcgatccact agtcatgagc
     3961 gcgtgtatcg cggtcgccac aggatcggag ctcgttcgct gatcgaaaat gaatgcacgg
     4021 tcgttcgagt atccgtcgcc gtttatgt
//
LOCUS       DATIMD010000151         4192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_636158, whole genome shotgun sequence.
ACCESSION   DATIMD010000151 DATIMD010000000
VERSION     DATIMD010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4192
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_636158"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2349)
                     /locus_tag="VLI40_03395"
     CDS             complement(<1..2349)
                     /locus_tag="VLI40_03395"
                     /inference="COORDINATES: protein motif:HMM:TIGR00914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0051139 - metal cation:proton antiporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CusA/CzcA family heavy metal efflux RND
                     transporter"
                     /protein_id="HSU96245.1"
                     /translation="MLKRIIEWSVNHKLVVLLGTLAVVLAGGWAMFRTPVDAIPDLSD
                     VQVIVMTEWPGQAPQTVEDQVTYPLSTEMLKVPHIKFVRGMSQFGLSAVYVVFEDGTD
                     LYWARSRVLEYLSSAQAKLPQGASPMMGPDATGVGWVMQYILADTSGKLNLAQLRGLQ
                     DFTVRPALTAVPGVAEIASLGGYEKQYQIDVDPARLLAYNVPIRKVSDAVRASNQDVG
                     ARVLEMGGSEYVVRGRGRFDSLDDIRNVAIGTGPGGTPVTVGDVANVHIGPEIRRGIT
                     DLNGKGEIVTGWVVMRYGENPLAVINGVKTKMAELEKALPKGVVFVDGYDRSGLIESA
                     IATLRSKLFEESLIVAAVTLLFLMHGSSALVAILTLPIGILMALLAMHALGLSANIMS
                     LGGIAIAIGAMIDAAIVMVENMHKHAEHNELNGNPRTHWELVIDSAKEVGPSLFISLL
                     IITVSFIPVFALQDQEGRLFKPLAWTKTLSMASASLLSITLVPVMMGLLIRGKLKPES
                     ANPVNRFLIKVYRPVIEFVLRHRWPTIIAAGAVLLVTIFPWSRIGSEFMPPLNEGAIM
                     DMPSLFPGVGSEQAKEIVTQRDAALAKIPEVQLVLGKIGRAETATDMAPLSMIETIAV
                     LKDRKYWRPGVTYDSIVAQANATVKTPGVGNMWSMPIKNRLDMLATGIKTPVGIKIFG
                     PSLDTLDQIGQKIEGILPAVSGTNTVFAERAVGGKYLDVTVNRDAAARYGLTGDDVQM
                     ALSAAVGGVDAGQVIEGRERYSVLVRYPRALRDNPEQVGDVLV"
     gene            complement(2353..3657)
                     /locus_tag="VLI40_03400"
     CDS             complement(2353..3657)
                     /locus_tag="VLI40_03400"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSU96246.1"
                     /translation="MNRVKISTHARWLAVASAVIVVLGGAAWILVSRHQTAPTSIPSA
                     GGMAGMSGMAGMGASSTNADGPVTLTASQIDQFGVTFGIAAIRPLTSEVRTAGVVTFD
                     ETRMAQIAPKFGGYVDRLHVNSTGQQVRRGQPVLDIYSPELVAAQQELLLAGQLDRSI
                     GKSSVPGITAGGTDLVAASRRRLQQWDISDAQIDQILSTRQVRRTLTLYAPVSGIVVD
                     KKVLQGQAVTPGEELYTIADLSDVWVDAELREVDAASVRVGSAAKIEFTGLPGHTYNG
                     RVAYVYPTLQPEARSIKARIVVPNSDGVLKPGMYATVRLSTPGRSALTVPSSAILQTG
                     DRNIVFVDMGTGESTRQLMPHDVVPGSVAGDYTEILSGLEAGQRVVTSAQFLLDSESN
                     LGEVMKSMIANMGSGDRTMQKQMQKPMQMPASPAASSVKPQR"
     gene            complement(3654..>4192)
                     /locus_tag="VLI40_03405"
     CDS             complement(3654..>4192)
                     /locus_tag="VLI40_03405"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU96247.1"
                     /translation="AIAHSPMLQAHEARISAQERRLDLARKARLPDFDISLEYDQRTQ
                     FRDYVSFFVSVPLRLQKRRKQDQEVVGAGAELNALEAEHMTDVNSIRQEIATRVSDVE
                     RERTRLALSVKAILPQAHAALESATASYQVGRVDFTSLVDAQAAVFNYETAYWRSLTD
                     FAKAIAELQRVVGAEVLR"
BASE COUNT          832 a         1334 c         1149 g          877 t
ORIGIN      
        1 gaccagcaca tctccgacct gttccggatt gtcacgcagc gcgcgcggat accgcaccag
       61 cacgctatag cgctcgcgcc cctcgatcac ctggcccgcg tccactccgc ctacagcggc
      121 gctcaacgcc atctgtacgt cgtcgcctgt gagtccatag cgcgctgctg catcgcgatt
      181 gacagtgacg tcgagatact tgccgcccac cgcacgttcg gcgaacacgg tgttggttcc
      241 tgataccgct ggcagaattc cctcgatctt ctgcccgatc tgatccagcg tatccagact
      301 cggtccgaag atcttgatgc cgaccggagt cttgataccg gttgccagca tgtcgagcct
      361 gttcttgatc ggcatcgacc acatgttgcc gacaccgggc gttttcacag tcgcgttcgc
      421 ctgggcgacg atcgagtcgt acgtcacccc cggacgccag tacttcctgt ccttcaagac
      481 tgcgatcgtc tcgatcatcg atagcggggc catgtcggtc gcggtctctg cgcgcccaat
      541 cttgcccagc accaattgga cttcaggtat cttcgcaagc gccgcgtcgc gttgcgttac
      601 tatctccttg gcctgttcac tcccgacacc gggaaagagc gatggcatgt ccatgatagc
      661 cccttcgttc aggggcggca tgaactcact gccgatgcgc gaccatggga agatggtcac
      721 gagcagcacg gcaccagcag cgatgatcgt tggccagcga tgcctgagca caaactcgat
      781 aacgggccgg tagaccttga tcaggaatcg attgactgga ttggccgatt caggcttcaa
      841 cttgccacgg atgagtaatc ccatcatcac tggcacgagc gtgatcgaga gcagagaagc
      901 cgatgccatc gatagcgtct tggtccacgc cagtggcttg aagagccgtc cctcctgatc
      961 ctgaagcgcg aagaccggga tgaacgatac ggtgatgatg agaagcgaga tgaagagcga
     1021 cggtccgacc tccttggccg aatcgattac cagctcccag tgggttcgcg ggtttccgtt
     1081 gagttcatta tgctcggcgt gcttgtgcat gttctccacc atcacaatcg ccgcatcgat
     1141 cattgcacca attgcgatag cgatcccgcc caggctcatg atgttggcac tcaagcccaa
     1201 cgcgtgcatg gccagcagtg ccatcaatat tccgatcggt agcgtcagga tcgcaaccag
     1261 ggcgctcgac ccgtgcatga gaaagagcag tgtcaccgct gcgacgatga gtgactcctc
     1321 gaatagcttg ctccgtagcg tcgcgatcgc gctctcgatc aatccagagc gatcgtaccc
     1381 gtcgacgaag acgacacctt tgggcagagc cttctccagc tcggccatct tagtcttgac
     1441 tccgttgatg accgccaacg ggttctcacc gtagcgcatc accacccatc cagtgacgat
     1501 ctcgcctttt ccattcagat cggtgatgcc acgccggatc tcgggtccga tatgcacgtt
     1561 ggcgacatct ccaaccgtga caggtgtacc tccaggaccc gtgccaatcg cgacgttgcg
     1621 aatgtcatca agactgtcga agcgcccgcg gccgcgcact acgtactcgg acccacccat
     1681 ctcgagcaca cgagcgccca catcctgatt ggacgcgcga acggcgtcgc tcactttccg
     1741 gatcgggacg ttgtacgcga gcagcctggc tggatcgaca tctatctgat actgtttttc
     1801 gtatccgcca agcgaagcaa tctcggcgac accgggaacc gcagtgagcg caggacggac
     1861 ggtgaagtcc tgcaagccac gcaactgcgc aagattgagc ttgccgctcg tatctgccag
     1921 gatgtactgc atcacccaac cgacgcccgt cgcatcgggc cccatcatcg gcgacgcgcc
     1981 ttgtggaagc tttgcttgtg cgctgctcag atactcgagc actcgactgc gcgcccagta
     2041 caggtccgtt ccgtcctcga acaccacgta caccgccgac agaccgaact ggctcatccc
     2101 gcgcacgaac ttgatgtgcg gcaccttgag catctccgtc gaaagcggat acgtaacctg
     2161 atcctccaca gtctgcggcg cctgaccggg ccattcggtc atgacaatta cctgcacgtc
     2221 cgacagatcg ggaattgcat ccacaggcgt tctgaacatc gcccagccgc cagctagcac
     2281 taccgcgaga gtgccaagca gtacgaccag cttgtggttc actgaccact cgataatccg
     2341 cttgagcatc ggttatctct gcggcttgac agacgaagcg gcaggagatg caggcatctg
     2401 catcggtttc tgcatttgct tctgcattgt cctgtcacca gatcccatgt tggcgatcat
     2461 gctcttcatc acttcaccga gattggactc ggaatcgagc aggaactgcg ccgacgttac
     2521 gactcgttgc cccgcttcga ggccggagag aatctccgtg tagtcaccag caacgcttcc
     2581 aggaacaacg tcgtgtggca tcaactgtcg tgtcgattcg ccggtcccca tatccacgaa
     2641 gacgatgttt cgatcgcctg tctggagaat ggcagagctt gggacggtga gggcggagcg
     2701 accaggtgtc gacaatcgaa cggtcgcata catgccaggc ttgagcacgc cgtcagagtt
     2761 tggcaccacg atacgcgcct ttatcgaccg cgcttctggt tgtagcgtcg gatacacata
     2821 tgcgacccgg ccattgtacg tatgaccggg cagtcccgtg aactcgatct tcgcggctga
     2881 gccgacgcgc acactggccg catccacctc gcgcagttcg gcgtcaaccc agacatccga
     2941 gagatcggca atcgtgtaga gctcctctcc gggagtcacc gcctgaccct gcagcacctt
     3001 cttgtctacg actatgccag atacgggtgc atacagtgtg agcgtgcgac gcacttgcct
     3061 cgtgctcagt atctgatcga tctgcgcatc ggagatgtcc cactgctgaa gccgtcgtct
     3121 cgatgctgct accagatcgg tcccacccgc tgttatgccc gggacactac tcttgccgat
     3181 gctgcgatcg agctggcccg caagcagcaa ctcctgttgc gcagccacca attccggaga
     3241 atagatatcg aggacgggtt gccctcggcg cacctgctgg ccggtggaat tgacgtggag
     3301 cctgtccacg tagccgccga atttgggcgc gatctgcgcc atcctcgttt cgtcgaacgt
     3361 cactactccg gcggtgcgca cctcgctcgt gagcggacgt attgccgcga tcccaaacgt
     3421 cacgccgaac tgatcgatct gcgatgcagt caacgtgact ggcccgtcgg cgttagtact
     3481 gctggcgccc attccagcca tgccggacat tcctgccatt ccgccagcgg acgggataga
     3541 tgttggagcc gtttgatgac gggacaccag gatccatgca gctccgccaa gaacaacgat
     3601 gaccgcgctc gcaactgcaa gccatctcgc gtgcgtcgat atcttgactc tattcatcga
     3661 agcacctccg cccctacaac acgctgtagc tctgcgattg ccttcgcgaa gtcggtgaga
     3721 gaccgccagt atgcagtttc atagttgaac accgcggctt gcgcatcgac caacgacgtg
     3781 aagtcgacac gtccgacctg atagcttgcg gtcgccgatt cgagtgctgc gtgtgcctgt
     3841 gggaggatcg ccttgactga tagcgcgagt cttgtgcgct cgcgctcgac gtcgctcaca
     3901 cgcgtcgcga tctcctggcg gatggaattc acatccgtca tgtgctcggc ctccagcgcg
     3961 ttaagttctg cccctgcacc aacgacctcc tggtcctgct tccgacgctt ctgcaatcgc
     4021 agcggtacgg agacgaagaa cgacacataa tcccggaatt gtgtccgctg atcatactcg
     4081 agtgatatgt cgaaatccgg caagcgggcc ttgcgagcga gatcgagtct gcgctcctgc
     4141 gcgctgatcc gtgcctcatg cgcttgcaac atcgggctgt gtgcgattgc ga
//
LOCUS       DATIMD010000152         4424 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5544169, whole genome shotgun sequence.
ACCESSION   DATIMD010000152 DATIMD010000000
VERSION     DATIMD010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4424
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5544169"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..298)
                     /locus_tag="VLI40_03410"
     CDS             complement(<1..298)
                     /locus_tag="VLI40_03410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96248.1"
                     /translation="MTRWPRVAMRMRGYVSVAGIAMCAGCAAHTQAVVPVPEQTAAKP
                     PAHVVREEIPTPPVMPPLEVSDEATSSQLDRAVDEGKALGRELQWVEAEETAASG"
     gene            complement(306..590)
                     /locus_tag="VLI40_03415"
     CDS             complement(306..590)
                     /locus_tag="VLI40_03415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96249.1"
                     /translation="MPISVARDRPTVFVRREAFERVGLERHLIDARFNLTDEEFVVEG
                     GLIAIGPLPSDDLLSDLVIQLETIGLRYFDDFFELSGNWPEWLGMFVTSA"
     gene            639..2561
                     /gene="mnmG"
                     /locus_tag="VLI40_03420"
     CDS             639..2561
                     /gene="mnmG"
                     /locus_tag="VLI40_03420"
                     /inference="COORDINATES: protein motif:HMM:TIGR00136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HSU96250.1"
                     /translation="MQNFESSFDVIVIGGGHAGTEAAVAAARLGASVALITSALETIG
                     QMSCNPAIGGVAKGTVVREVDALGGIMGRATDLASLQFRMLNRSKGPAVWSPRAQCDR
                     GLYRRAVRTLIEERPNLQTIQGTVARLIMDDAGATVLGAETLEGRRFGARCIVITAGT
                     FLRGRIHIGTGMNLSGGRAGESATTHLAEQLERAGLTVERFKTGTPPRIDGRSVDFSR
                     LQVQESEIEQFNYSWSHFWPAPRSDAHGTRHPAQLPCWITYLGAPGKQIIADNIGKSA
                     MYGGAISARGPRYCPSVEDKILRFPDAERHQIFLEPEGHDTSELYVNGLSTSLPADVQ
                     VEILHSIPGLEQARMNRAGYAIEYDYYPPTQLDPSLQVKAVHGLYFAGQINGTTGYEE
                     AAGQGVVAGLNAGLAATGRGSIVFGRHTSYIGVLVDDLVTRGVDEPYRLFTSRSEFRL
                     TVRQDNAIERLSPIAVELGLYDERERQVVERRFTADREARRLAEETSIRPEQAAALLS
                     EVDSRALAHSVKIAEVARRQSVSLASLFAAVGVGQDLDSAAVLSTELEIKYAGYFDRE
                     RMQAEKIKRMGEFSLPDDLDYTGMASLTFEARHKLTAIRPRSLAQVSRIPGVSPNDIQ
                     NLVIEVERHHRRGVPK"
     gene            2672..3028
                     /locus_tag="VLI40_03425"
     CDS             2672..3028
                     /locus_tag="VLI40_03425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96251.1"
                     /translation="MVEISIADGMAVFHVHGMDKFWAFRSQIQIPLVHITGAIVDTEA
                     ARGWWHGLRMPGTQIPGVITAGTFYQHGRRVFYDVHDPDNTIVITLNHEKFDQLVVEV
                     ADPEAEARKITTAINR"
     gene            3154..3438
                     /locus_tag="VLI40_03430"
     CDS             3154..3438
                     /locus_tag="VLI40_03430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96252.1"
                     /translation="MSNIRSITRIEPGQFALIMGVTYVLIGIIIGVLMYLFTSMIPMP
                     APFGSAARGIGMIFIPILYGIIGYICGFIGAMIYNLVAGTVGGIKVTVSD"
     gene            3540..>4424
                     /locus_tag="VLI40_03435"
     CDS             3540..>4424
                     /locus_tag="VLI40_03435"
                     /inference="COORDINATES: protein motif:HMM:NF036967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel"
                     /protein_id="HSU96253.1"
                     /translation="MAVDSRVRLLNRDGTFNVELAGTKGRHTFAPYHALLGMGWGRFL
                     LIVAAFYLLVNAVFALAYLACGRDALAGAGFAGHSTLFSDYFRAYFFSVETFGTIGYG
                     NIAPVGMPANILLTAESFIGLLSAALATGLVFARFSRPSAAIMYSRHALIAPYRGIKA
                     FMFRCANERSNQLIEVSVRIMYSRIAVRPNGERVREFTSLPLEFDKVTFFALSWTVVH
                     PIDESSPLFHCTPETLVANEAEFLVLLSGNDETFAQTVHSRTSYKASEIIWNARFRSM
                     FIESTTRGTAGMDLARIHD"
BASE COUNT          879 a         1381 c         1284 g          880 t
ORIGIN      
        1 cgccgctcgc cgccgtttcc tcggcttcga cccactgcag ctcgcgaccc agcgccttgc
       61 cctcgtccac cgcgcgatcc agttgcgagg atgtcgcctc gtcgctcacc tcgagcggcg
      121 gcatcacagg cggagtcgga atttcttcgc gaacaacgtg cgcaggcggt ttggcagccg
      181 tctgttccgg aacagggaca acggcctgag tatgcgccgc gcagcctgca cacatggcaa
      241 tgccggctac cgatacgtac ccgcgcattc gcatcgcgac gcgcggccat cgtgtcacta
      301 tcagttcacg cagatgttac gaacatgccg agccactcgg gccagttccc gctcaactcg
      361 aagaagtcgt cgaagtagcg aaggccgatc gtttccagct gaatcaccag atcgctcagc
      421 aggtcgtcgg agggcagcgg cccgatcgcg atcagtcctc cctccaccac gaattcctcg
      481 tcggtcagat tgaagcgagc gtcgatgaga tggcgctcca gccccacacg ctcaaaggcc
      541 tcgcgcctga cgaataccgt agggcggtca cgagcaacgg agatcggcat gatccaaagt
      601 tagcggtgta tcctacattt ataacgagac ccacgatcat gcaaaatttc gaatcttcgt
      661 tcgacgtaat cgtcatcggc ggcggccatg ccggcactga agcagccgtc gcggcagcgc
      721 ggctgggtgc gtcagtcgcc ctcatcacga gcgcgctcga gaccatcggc cagatgtcct
      781 gcaatccggc tatcggtgga gtggccaagg gtaccgtcgt ccgcgaagtc gatgcactcg
      841 gtgggatcat gggccgagcc accgatctgg catcgctgca gttccgcatg ctcaatcgga
      901 gcaagggacc tgcagtctgg tcgccccgtg ctcagtgcga tcgcggcctg tatcgcaggg
      961 ctgtacgtac cctcatcgag gaacgcccca acctccagac cattcagggc accgtcgcac
     1021 gcctcatcat ggacgatgct ggagctaccg tactcggcgc agagacgctc gaaggccgga
     1081 ggtttggtgc ccggtgcatc gtgataaccg ccggcacatt tctcagagga cgcatccaca
     1141 tcggtaccgg gatgaacctc tccggcgggc gcgcgggcga gtccgccacg acgcacctcg
     1201 ccgagcagct cgagcgcgcc ggacttacgg tggaaaggtt caagacgggc acgccgccac
     1261 gcatcgacgg gcggtctgtg gacttttccc ggctgcaggt ccaggagagt gagatagagc
     1321 agttcaacta ctcctggtct cacttctggc ccgcaccgcg ctcggatgca cacggaacac
     1381 gtcatccggc gcagctcccg tgctggatca cctacctcgg cgcacccggg aagcagataa
     1441 tcgcggataa catcggcaag tccgccatgt acgggggcgc aatctccgcc cgcggcccgc
     1501 gttactgccc gtctgtggaa gacaagatcc tcagattccc ggacgcggag cggcatcaga
     1561 tctttctcga gccggaaggt catgacacga gcgagctcta cgtcaacggg ctttccacgt
     1621 cacttccagc tgacgtccag gtcgagatcc tccacagcat tcccggactc gagcaggctc
     1681 gcatgaaccg cgctggctac gccatcgagt acgactatta cccgcccacg cagctcgacc
     1741 cgtcccttca ggtcaaggcc gtacatggtt tgtacttcgc ggggcagatc aacggcacaa
     1801 cgggctacga ggaagcggcc gggcagggag tggttgccgg cttgaacgca ggcctcgccg
     1861 ccacaggccg cggctcgatc gtgtttggac ggcacacctc gtacatcgga gtgctggtgg
     1921 acgacctcgt gacacgcggt gtggacgaac cgtatcgcct gttcacatcc cgttccgagt
     1981 tccgccttac cgtgcgacag gacaacgcga tcgagcgtct ctctcccatt gccgtcgagc
     2041 tcggactgta tgatgagcgc gagcgccagg tcgtggagcg tcgcttcaca gcggatcgcg
     2101 aagcgcgccg gctcgctgaa gaaaccagta tccgtcccga acaggcggca gcactgctgt
     2161 cggaagtcga cagtcgcgcg ctcgcgcact cggtcaaaat cgcagaggta gccagacgcc
     2221 agagcgtttc gcttgcttcc ctgttcgccg ccgtcggcgt tggccaggac ctcgactcgg
     2281 cggccgtcct gtcgacggag ctcgagatca aatacgccgg ttacttcgac cgcgagcgca
     2341 tgcaggccga gaagatcaag cggatgggcg agttctccct tccggatgac ctggattata
     2401 ccggcatggc gtcactcacc ttcgaggcgc gccacaagct gaccgcgatt cggccccgct
     2461 ctctggctca ggtctcccgt atccccggcg tcagccccaa cgacattcag aacctcgtga
     2521 tagaagtgga gcgacaccac aggcgcggcg tacccaagta gcaactgcag cccgcaggcc
     2581 tgggtagccg cgagcgttcg ccctctgccg ctcgttccgt tcgattccgg aacgtcgtat
     2641 tttctttcct ctcctctgga gggaagtgcg tttggtggaa atatctatcg ccgatggaat
     2701 ggccgtcttc cacgtccatg gaatggataa gttctgggca ttcagaagcc agatccagat
     2761 ccctctcgtc cacattaccg gtgcgatcgt ggatactgaa gccgcacgtg gatggtggca
     2821 cggtctccgt atgccaggca ctcagattcc aggcgtcatt actgccggca cgttctatca
     2881 gcatggcagg cgtgtcttct acgatgtgca cgatcctgac aacaccatag tcataacgct
     2941 gaaccacgag aagttcgatc agctcgttgt cgaagttgcc gatccggaag ccgaggcgag
     3001 gaagatcact accgcgataa atcgctgatc aatccgtgat cagcccatga tcaatccttc
     3061 tcgtggctga cgtatcggca tagtcgatca ttgatgtcgg cgcgcgaccg attcgcgcat
     3121 ggatgcagtt cacccgaaga cggagcttaa gtcatgtcga acattcggag catcacgaga
     3181 attgagcctg gccagttcgc actgataatg ggtgttacgt acgtgctcat cggaatcatc
     3241 atcggcgtcc tgatgtacct cttcacatcg atgattccaa tgccggcgcc gttcggcagc
     3301 gcggctcgcg gtatcggcat gatattcatt ccgattctct acggcatcat cggctacatc
     3361 tgcggcttca tcggagcgat gatctacaac ctcgtcgctg gcaccgtagg tggtataaag
     3421 gttacagtta gcgactgaca atttgctgag gatcacgtcg catcgctgac ccagaatcac
     3481 ctgtaaccaa accagttaca gatccggacg ctgcccgcaa tctcggtttc ggaaatcgca
     3541 ttgcggtaga tagtcgcgta aggctactaa atcgcgacgg tacgttcaac gtcgagctcg
     3601 cagggacgaa gggcaggcat acgttcgcgc cataccacgc gctactcggt atgggatggg
     3661 gacgcttcct gctcatcgtc gctgcgttct acctgctcgt gaatgccgtg tttgcgctcg
     3721 catatctcgc gtgcggccgc gacgcacttg ccggtgctgg cttcgctgga cactccacgc
     3781 tgttcagcga ttacttccgc gcctacttct tcagtgtcga gacattcggt accatcggct
     3841 acggcaacat cgcgccggtt gggatgccgg cgaatattct gctcactgcg gagtcattca
     3901 ttggcttgct gagcgctgca ctcgcgacag gactggtgtt cgcgcgattc tctcggccga
     3961 gtgcggcgat catgtacagc aggcacgcac tgatcgctcc gtatcgcggc atcaaggcgt
     4021 tcatgttccg ttgcgccaac gaacgcagca atcagttgat cgaagtctcg gtacggatca
     4081 tgtacagcag aatcgcagtg cgtccaaacg gcgagcgtgt gcgagagttc acgtcgctac
     4141 cgctggagtt cgacaaggtc accttctttg cgctgagctg gactgtggtg catccaatcg
     4201 acgaatccag tccgttgttt cattgcacgc cggagacact ggtagcgaac gaggcggaat
     4261 tcctcgtcct gctgtcggga aacgatgaga catttgcgca gacagtgcat tcgcgaacgt
     4321 cgtacaaggc gagcgagata atctggaacg cgcgattccg ctcgatgttc atcgagtcaa
     4381 cgaccagagg taccgccggt atggacctcg cgcgcatcca cgac
//
LOCUS       DATIMD010000153         7984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4388485, whole genome shotgun sequence.
ACCESSION   DATIMD010000153 DATIMD010000000
VERSION     DATIMD010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7984
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4388485"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1406..2152)
                     /locus_tag="VLI40_03440"
     CDS             complement(1406..2152)
                     /locus_tag="VLI40_03440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96254.1"
                     /translation="MRTVSSIAARYGGSVISILDADQLLEAIAFTDGDCLVIDPALVT
                     PATAETLAITVARFPRPVVAFSGIATEAMQSVVVLARRSRARFIFRGATTERSALEHA
                     LLLTPDVKLRAALLSGIDAHMARLPSIVGDRLRDAIMIGDGAHSLDTFAAMTGLARRS
                     IDRHLADAGFVSGKRLLDAWRIVAGYRAITRSRVPLGRIARALGCTMRVMDAQFVTMV
                     GITCSELRAEPMAVEEVAARIARRLTEPEG"
     gene            2447..2800
                     /locus_tag="VLI40_03445"
     CDS             2447..2800
                     /locus_tag="VLI40_03445"
                     /inference="COORDINATES: protein motif:HMM:NF015893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC/Spx/MgsR family protein"
                     /protein_id="HSU96255.1"
                     /translation="MEVQIFGTRKSADTRKAQRFFTERRVKVHFVDLNERAASLGELR
                     RFAQKFGVGSLIDRKSPRYLDLGLQHARMSDDSWLLKLADEPLLLTQPMVRFGQKVTI
                     GLAEAEWKGWVASAE"
     gene            2918..4855
                     /locus_tag="VLI40_03450"
     CDS             2918..4855
                     /locus_tag="VLI40_03450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSU96256.1"
                     /translation="MTLISVSNASVEFGATTLFKDITFTVAEGERWGIVGRNGTGKTT
                     LFKLITGELRPTSGAVAKSPTMKISVLDQHRDFEGATTVWEAAAGPFAELLALEKSLA
                     DQANRLGELGEACTERDLDRYSRDLERFEREGGYTFAPRVDAVLHGLGFDPVEARTQP
                     LAHLSGGERGRVGLARQLVSTAEVLLLDEPTNHLDLDTTAWLESYLRETDKTILLVSH
                     DRAFLAEVADHMLHFEAGTATPYACGYEEFVRQRAERRLAAQRAFSKQSRVIAEEEDY
                     IRRNIAGQNSKQAKGRRKRLERVGRLSPPPGESGTMALRLQTLERGGDQVVVADHVSV
                     GVEGRTLISDLTSVVNRGDRLGIVGPNGAGKSTFLKTLIGDRAPESGVLRMGGSITVE
                     YYRQDMAQVPSDKTLYNVISDMRPQWERGLIYGHLGRFGFSGEETARTAATLSGGERA
                     RVALAMMMLSRANLLIFDEPTNPLDVESIEAIEDAIDGYEGTVILVSHDRALLRALCT
                     RVWVLHDTHVTDFPGTFAEWEVASEEREHAARVSAEEEEDLRRVREKQKTRRRESDME
                     KERASRRDMKRSAEEAESRVEALEAQVAELTRTLEDPSLYGTTGGTARAVKLGKELDR
                     VRRSLDRALEEWTSLVDGSAG"
     gene            4948..5142
                     /locus_tag="VLI40_03455"
     CDS             4948..5142
                     /locus_tag="VLI40_03455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96257.1"
                     /translation="MKPSFTGQRSVPATDQKFRPTDEHLIEENKEEVDKINHGDKMEP
                     APKQDRDKFAEIDRNSEKKE"
     gene            complement(5299..6378)
                     /locus_tag="VLI40_03460"
     CDS             complement(5299..6378)
                     /locus_tag="VLI40_03460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96258.1"
                     /translation="MNSQLRRCLATSAALLLFVGISSLSLAQGTFVAHTITPDSGEQR
                     HLSNIRQLTNGGENAEAYFSADSKRLIFQSTRDGRTCDQQYIMNTDGTNVHRVSNGKG
                     KTTCGYFMDGDRRIFFASSSAVDTACTPRPDPSKGYVWRLDPYDIYTANPDGSKLKRL
                     TRYGVYTAEGVLSPDGRKIVFTSLKDGDLDIYTMNVDGTNVKQLTHAVGYDGGPWWSP
                     DGKQIVYRAFHPTDPKDLADYKSLLAERLVRPNKMDLWTMNADGSNQRQITHLGGASF
                     GPSWTPDGKKIVFSSNYHTDPKLGNFDVFLVNPDGTGIEQITTNATFDGFPMFSPDGR
                     KFVWASNRLVKNQHETNVFIADWRN"
     gene            6556..6918
                     /locus_tag="VLI40_03465"
     CDS             6556..6918
                     /locus_tag="VLI40_03465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96259.1"
                     /translation="MIGRALILRCPNCGGRPVLKDWFHLREHCPKCGIALERGEESDY
                     YIGGMLLNITLCFIIFAVGFWGVLVLTYPRVPWGLLQYGLVAAMIVLPILLYPMSRIV
                     WLAADLAVRPRSERTPEE"
     gene            complement(6979..>7984)
                     /locus_tag="VLI40_03470"
     CDS             complement(6979..>7984)
                     /locus_tag="VLI40_03470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HSU96260.1"
                     /translation="ARAHAVEQLIAAARAPGGAMPIDPATLFVAGFLDANSAARGIAT
                     SKGLFAYHASTDVSLSCTARTPDGTGSGYAAAGGRAWTTVDPAGLGRRAAQKALASRN
                     PVAIEPGRYTVILEPRAVADFVPLLMGSFNARSADEGRSPFSKKGGGTKLGEKITDER
                     VTLLSDPFDPDLLGQPFDNDGLPLKRVVWIENGVLRNLAYSRFWAAKKGVEPNSGGGG
                     GGFGRNPAGLKLTGGTKSVDELIAGTTRGVLVTHFFYIRSLDPRTVQLTGLTRDGTFL
                     IENGKITRSIKNFRWNDSPLLSLARLADIGKAEPVESGVVMPALKINDFTFASLSDAV
                     "
BASE COUNT         1608 a         2249 c         2559 g         1568 t
ORIGIN      
        1 aattatcgca tcgacgggtg ttttttcgat cgagagtacg gaagcgatat cgtgttcacc
       61 aaacgcttct cattgtgctt ttctcgcccg acgcacaggc cgtggaaata gctcagatgt
      121 ccactatctc aggatgagag ctatgcacaa tgttttcgca tggtctcact gggcggattt
      181 cggaaaggga caacaagtgc tgatgacgac agaaggcgct cccactcggt tagtgtggcg
      241 cggtaacgac agtctagaag ctgtctgcga taactgtaag ctatcgatcc cggatgtagt
      301 cagagaaaag aaaaagagcg gctctgtaat catctcgtat gtcggatttc ctccaccata
      361 tgggcccttg taacgctcca gcactccgtt cgactccctc gaagtgccgc atcatctgct
      421 ggaagtcttt ggatgtgaat tgcgcgccgt tgtcgctgac gacagcgggt ttcacgtcgc
      481 ttgctcctgg atagttcttc ctcgtcagtg ccaggacgca ctaggcgtgg acggcacgtc
      541 tgcagccatg ggcctcgcgt gggagcaacg cagagcggga atgcgcacgg agcaagacct
      601 gacccaaaac ctgctcccga accttactga gctaatcagg tgtccactat tttgaggagg
      661 ccagccttcg ccgatgtgac ctcgacacag cactaaatgt attcaatttg ctgaaggcgc
      721 cactcgtcac cgcgtaagat gaagaatagt gtaaagagcg gtgatcgttg tgcaccagtt
      781 gaatcacttc cggttgtgcc gcctacaaca tcggcttgtc ctgtgtttgg aaaatccttt
      841 gaaaggctcg tccgaacgaa attattaggg gtcctgctta acaggacgcg tagtgcactc
      901 atattgtgcc cgcaacctag caagtcacaa tatgcccctc gtttttcacg gagttcccga
      961 cggaaagctg acgcactaat aggtgggtta tccgtgccca gtgttattcc gctgtcatca
     1021 acgatgctgg agagcgtccg tgtgtcaccc ctcttgatgg cgaggacgac tcgcttgccg
     1081 gcttcctgta acattgaaac ctggcgagct ggtgttggaa acgaagggat ccttgtgccg
     1141 atgctttgtg cgctggccaa gtgagcgaga aataaaccga acactaaagc aactaatcga
     1201 ttacgcatta atggcatcgc gggggatatt gattgggatc gatacgagtg ccattcggag
     1261 tagcaacttg aacgtgcgca cgaggaccgg ttatgcggcc ggttctatct gagatgccga
     1321 tcggttgacc tgacctgagc cacgaaagct gatccaaggt tatgttggtc ctcgaagccg
     1381 ggcgggcact ccacccgacg cccagttacc cctccggctc agtcaatcgt cgcgcaatcc
     1441 gcgccgccac ttcctcgacc gccatcggct ccgcccgtag ctcactgcac gtaataccaa
     1501 ccatcgtcac gaactgcgcg tccatcactc gcatggtaca gccaagtgcg cgcgcgatcc
     1561 ttccgagcgg aactctggac cttgtaatcg ctctgtaacc agccacgatg cgccacgcgt
     1621 ccagcagtcg cttgccagag acgaaaccag cgtccgcgag atgccggtcg atgctgcgtc
     1681 gggcgagccc ggtcatcgcg gcaaatgtgt cgagagaatg ggcgccatcc cctatcatga
     1741 tcgcgtccct gagcctgtct ccgacaattg acgggagacg agccatgtgt gcgtcgatcc
     1801 ccgatagcaa tgccgcgcgc agcttgacgt ccggagtcag cagcaacgcg tgctcgagcg
     1861 ccgagcgctc ggtggtcgca ccacggaaga tgaatcgcgc ccgactgcgt cgggccagga
     1921 ccaccacgct ctgcatcgcc tcggtggcga tgccactgaa agcaacgacc ggacgcggga
     1981 acctggccac ggtgatcgcg agtgtctcag ctgtcgccgg agtgacgaga gccgggtcga
     2041 tgaccaggca gtcaccgtct gtaaaagcta tcgcctccag aagctggtct gcatccagaa
     2101 tggaaatgac gctgccgcca tatctggcgg caatcgagga tacggttcgc accgcatctc
     2161 gcggcagaaa tacgatgtac ctcaagtcgg accggatcct gtcaggttcg gacccgtatg
     2221 cgtccggcaa gggcagatgg gtcgcgtctc gctcgacacg ccacactaat gtgcgccatt
     2281 gaatgctggt ctcgcatcga gagaaaagct ataccgttcg catctgaacg gtaagaacca
     2341 gcgccgatcc gctgtcacgg ctgtcatcac aactgtgcga acgatcaggt actggttccg
     2401 ggctgtccac caatccgtcg atgagccacg gcctaaatta gatggcatgg aagtacaaat
     2461 cttcggtacg aggaagagtg ccgacacgcg aaaggcgcag cgattcttca cggagcggcg
     2521 cgtgaaagtc cacttcgtgg atctgaacga gcgcgccgca tcgctgggtg agctgaggcg
     2581 atttgctcag aagttcggag tggggtccct gatcgacagg aaatcaccgc gctacctcga
     2641 tctcggattg cagcacgcgc gcatgagtga cgacagctgg cttctgaagc tcgcagacga
     2701 gccgctcctg ttgacgcagc caatggtacg cttcggccag aaggttacga ttggcctcgc
     2761 cgaggcggag tggaaggggt gggttgcatc ggcggagtaa cgtgagtcgg gcactcgagc
     2821 tagccatgca gccgacaacg cggccgacca tgcggctagc cgtgcaaata cgtggtttac
     2881 atttcggctc gtaaccacgt taaagcaaga atcaaagttg actctcatat ccgtttcgaa
     2941 cgcgtccgtg gaattcggcg cgacgacatt attcaaggac atcacgttca ccgtcgccga
     3001 gggcgagcgg tggggcattg tggggcgcaa tggtacggga aagaccacgc tcttcaagct
     3061 gatcacgggc gagctgcgtc ccacttcggg tgcggtggcg aagtctccca cgatgaagat
     3121 ctcggtgctg gaccagcatc gcgacttcga gggcgcgact actgtatggg aggcggcggc
     3181 cggcccattc gccgagctgc tggcgctcga gaaatcgctc gccgatcagg ccaatcggct
     3241 gggcgagctc ggtgaggcgt gcacggagcg ggatctggac cgctattctc gcgatctcga
     3301 acggttcgag cgcgaaggtg gctatacgtt cgcgccgcgc gtcgatgccg tgctgcacgg
     3361 acttggcttc gatcccgtgg aagcgcgtac gcagccactc gctcatctga gcggcggaga
     3421 acgcggtcgc gtcgggcttg cacggcagct ggtgagcacg gcggaagtcc tgcttctgga
     3481 cgagcccacg aaccatctcg atctcgatac gaccgcgtgg ctggaatcgt acctgcgtga
     3541 gaccgacaag acgatcctgc tcgtaagcca cgaccgtgca ttcctcgcgg aagtggcgga
     3601 ccacatgctc cacttcgagg ccggcacggc aacgccttac gcttgcggct acgaggagtt
     3661 cgtgcgtcag cgcgcggagc ggaggctggc ggcgcagcgc gcgttctcca agcaatcgcg
     3721 cgtgattgcc gaagaggagg actacatcag gcgcaacatc gccggccaga attccaagca
     3781 ggcgaagggg cggcgcaagc gtctggaacg ggtggggcga ctcagcccgc cgccgggcga
     3841 gagtggaacc atggcgctgc gactacagac gctcgaacgc ggcggcgatc aggtggtcgt
     3901 ggcggaccat gtaagcgtcg gagtcgaggg acgcacgctg atcagcgatc tgacatcggt
     3961 cgtgaatcgc ggagaccggc tgggaatcgt gggtcccaac ggtgctggaa agtcgacctt
     4021 tctcaagact ctgatcgggg atcgcgcgcc ggaatcaggc gtactccgaa tgggtggttc
     4081 catcaccgtg gagtactaca gacaggacat ggcgcaggtg ccgagtgaca agacgttgta
     4141 caacgtcatc agcgacatgc gcccacaatg ggagcgcggc ctgatctacg ggcacctcgg
     4201 ccgcttcggc ttttccggcg aggagactgc gagaaccgca gcgacgctat cgggtggaga
     4261 gcgggcacgt gtcgcgctcg cgatgatgat gctgtcgcgt gcgaacctgc tgatcttcga
     4321 cgagccgacc aatcccctgg acgtcgaatc gatcgaggcg atcgaggatg cgatcgacgg
     4381 ttacgagggt accgtgatcc tcgtgagcca cgaccgtgca ctgctacggg ctctgtgcac
     4441 gcgcgtgtgg gttctgcacg atacccacgt caccgatttt ccgggcacct tcgccgagtg
     4501 ggaagtggcg agcgaggagc gcgaacacgc ggcccgggtg agcgccgagg aagaagaaga
     4561 ccttcgccgt gtgcgcgaga agcagaagac tcggcgacgt gagtcggata tggagaagga
     4621 gcgcgcgtcc aggcgggaca tgaagagaag cgcggaggaa gccgaatccc gggtcgaggc
     4681 gctggaagcg caggtcgccg agctgacccg gaccctcgag gacccctcgt tgtacgggac
     4741 gaccggcggg acggctcgcg ctgtgaagct gggcaaggag ctggaccgcg ttcggcggag
     4801 cctcgacagg gctctggagg aatggacgag tctggtcgac ggctcggcgg gctgacggcg
     4861 cctctcccga acggctgcaa ctggtggatc gggcacgcat cctgaacgct tcgtggtagt
     4921 aaccactcaa cgagacgagg gtcaacgatg aagccatcat tcacaggcca gcgatcagtg
     4981 ccggctaccg atcagaagtt ccggccgacg gatgagcatc ttatcgagga gaacaaggaa
     5041 gaggtcgata agatcaatca tggcgacaag atggagccag caccaaaaca ggatcgcgac
     5101 aaattcgccg aaatcgaccg gaatagcgag aagaaggagt agttgggtcg gggatacatg
     5161 gggatcggcc actccgcgcg gaatccgtac cggatcctgc ttgcacttag cgaactcaca
     5221 cggagtccgt ccctactccg tccccactcc ggccccgctc cggccccgct ccggccccgc
     5281 tccggccccc atgctccgtc agttgcgcca gtcggctatg aagacgttgg tctcgtgctg
     5341 attcttcacc agccggttcg atgcccagac gaacttcctg ccgtccggac tgaacatggg
     5401 gaagccgtcg aaggtggcgt tggtggttat ctgctcgatc ccggttccgt ccggattgac
     5461 gaggaaaacg tcgaagttgc cgagcttggg atcggtgtgg tagttggacg agaagacgat
     5521 cttcttgccg tccggggtcc acgacgggcc gaagctggcg ccgcccaggt gcgtgatctg
     5581 gcgctggttg gatccgtcag cgttcatcgt ccacaggtcc atcttgttgg ggcgcacgag
     5641 tcgctcggcg agcagcgact tgtaatcggc gaggtctttc ggatcggtcg ggtggaatgc
     5701 gcgatagacg atctgctttc catcgggcga ccaccacggg ccgccgtcgt agccaacggc
     5761 gtgggtgagc tgcttcacat tggtgccgtc gacgttcatt gtgtagatgt cgaggtcacc
     5821 gtccttgagg gaggtgaaga cgatcttcct gccatctggc gacaggacgc cttcggcggt
     5881 gtagacgccg tacctggtga ggcgcttgag ctttgatccg tcgggattgg cggtgtagat
     5941 gtcgtacgga tccaggcgcc agacatatcc cttggacggg tccgggcggg gtgtgcaggc
     6001 agtatccacc gcactgctcg acgcgaagaa gatgcgccga tcgccgtcca tgaagtaacc
     6061 gcaggttgtc tttcccttgc cgttggacac gcgatggacg ttggttccat cggtgttcat
     6121 gatgtactgc tgatcgcacg tgcgtccgtc gcgggtactc tggaaaatga gccgcttgct
     6181 gtccgcgctg aagtaggcct cggcgttctc accgccattc gtgagctgcc ggatgttgct
     6241 gagatgacgt tgctcgcccg aatcgggggt gatggtgtgc gcgacgaacg tgccctgagc
     6301 cagcgagaga gaggaaatac cgacgaatag aagcagcgct gcggacgtcg cgaggcaacg
     6361 gcgaagttgt gaattcatgg tacccaaaat gggccttcgg attgtggagc ggtaggctcg
     6421 atgaatctgg tcgatccgcg ggaaagtctg cggcgcgtgg atgttagcat tagacatgtc
     6481 cacgcaacgt gagcgctgtc acagatgacc gagtcggaag gattgtcctg gccggggttt
     6541 cgcaccgttg ctcgaatgat cggccgggca ttgatcctca gatgtcccaa ttgtggcggc
     6601 cgaccggtac tgaaggactg gtttcacctg cgggagcatt gcccgaagtg cggaattgca
     6661 ctcgagcgcg gtgaggaaag cgattactac atcggtggga tgctgctcaa catcacactg
     6721 tgtttcatca tcttcgctgt cggattctgg ggagtgctgg tgctgacgta tccgcgcgtg
     6781 ccgtggggtt tgcttcagta cggactcgtg gcggcgatga tcgttcttcc gattctgttg
     6841 tatccgatgt cccggattgt atggctggcg gcggatcttg cggtgcgacc gcgatcggaa
     6901 aggacgccgg aggaatagca aaagcccgca cggatcgcga tccgtgcggg ctttgtcttc
     6961 gacgctccga tcgcaccgtt acactgcgtc ggacagcgat gcgaaggtaa agtcgttgat
     7021 cttgagtgca ggcattacca caccggactc gacaggctcg gccttaccga tgtcggcaag
     7081 tcttgcgagt gacaggagcg ggctgtcgtt ccagcggaag ttcttgatgc ttctggtgat
     7141 cttgccattc tcgatgagga atgtgccgtc gcgggtgagt ccggtgagct gcacggtgcg
     7201 cggatcgagt gagcgaatgt agaagaagtg ggtgacgaga acaccgcgag tggtgccggc
     7261 aatcaactca tcgactgatt tcgttccacc cgtcagtttg agacctgctg gattacgacc
     7321 gaatccaccg ccgccaccac cgctgttggg ctcgacacct ttcttcgcgg cccagaagcg
     7381 cgagtaggcg aggttcctga gaacgccgtt ctcgatccag acgacacgct tgagtggcag
     7441 tccatcgttg tcgaatggct ggccgagcag atcgggatcg aatggatccg agagaagcgt
     7501 gacacgctcg tcggtgatct tctcgccaag tttggtgccg ccgccctttt tggagaacgg
     7561 gctgcgtcct tcgtcggcag aacgcgcatt gaacgagccc atgagaagcg ggacgaagtc
     7621 agcgacagcg cgcggctcaa ggataacggt gtagcgacct ggctcgattg caacgggatt
     7681 gcgcgacgcg agtgctttct gcgctgcgcg tcggccgagt ccggcgggat cgacggttgt
     7741 ccatgcgcgc ccaccggccg cagcgtaacc cgagccggtt ccgtccggcg ttcgtgccgt
     7801 gcatgacagt gacacatcgg tgctggcgtg atatgcgaag agtccctttg acgtcgctat
     7861 gccgcgcgcg gcgctgttcg cgtcgagaaa gccggcgacg aaaagcgttg cagggtcgat
     7921 tggcatcgca ccgccgggtg cgcgtgccgc tgcaatgagt tgctcgacag cgtgcgcgcg
     7981 tgcg
//
LOCUS       DATIMD010000154         4532 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2657142, whole genome shotgun sequence.
ACCESSION   DATIMD010000154 DATIMD010000000
VERSION     DATIMD010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4532
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2657142"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..597
                     /locus_tag="VLI40_03475"
     CDS             <1..597
                     /locus_tag="VLI40_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSU96261.1"
                     /translation="VQIDGMGTSNRSKAFHDVAWKDLADAGFPDRILWHKAVAAKYPY
                     YDITRVGIYGTSAGGQSALGALLFHPEFYKAAVSAAGSQDNRMDKIWWNEQWMGWPVG
                     PQYAASSNVDNAYRLQGKLLLVVGEMDPNVDPSSTMQVVNALIKAKKYFDLLVIPGAG
                     HGSGGPYGELKRFDFFVHNLLGVEAPERNHSAASPAAQ"
     gene            680..1471
                     /locus_tag="VLI40_03480"
     CDS             680..1471
                     /locus_tag="VLI40_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2071 domain-containing protein"
                     /protein_id="HSU96262.1"
                     /translation="MPRVFLTAEWRNLVMLNYAVEPSVLRSYVPAGTELDLWNGIAFV
                     SLVGFLFANTRLLRVSVPGHRNFEEVNLRFYVRRNVDGEVRRAVTFIREIVPRAAIAF
                     VAARAYNEPYVALPMRHEYGDVAQNGAPSTVEYGWRCSNRWTNMSVRPVGSGVPAVAG
                     SQEEFITEHYWGYTRQRDGSTFEYRVMHAPWRIWHVDDAQLTGDLAQVYGAEFARILS
                     GPPVSAFLADGSPVTVHAPTRLLPSRTASPDTAQSGEVPGPYLDV"
     gene            1801..2091
                     /locus_tag="VLI40_03485"
     CDS             1801..2091
                     /locus_tag="VLI40_03485"
                     /inference="COORDINATES: protein motif:HMM:TIGR02607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HSU96263.1"
                     /translation="MRPVHPGEILREDFLAEMGMSANALAKALHVPAPRVNDIVRERR
                     GVTADTALRLARYFGSTPQFWLNLQSAYDLRRAEIAAGRRIAREVSAITDAA"
     gene            complement(2149..3198)
                     /gene="trpS"
                     /locus_tag="VLI40_03490"
     CDS             complement(2149..3198)
                     /gene="trpS"
                     /locus_tag="VLI40_03490"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HSU96264.1"
                     /translation="MSTSMAAHRRDDERQNQSDATDVILTGDRPTGPLHLGHYAGSLR
                     SRLALQGRCAHTLLIADLQALTDSSGRAAHVARHVPEIALDYLAVGIDPAQTTIAVQS
                     RLSALAELTVLYLNLVTVARLERNPTVKAEVELRGFERDIPAGFLCYPVSQAADITGF
                     RATLVPVGDDQLPMIEQTNEIVRRVNRLAGTSVLPECRALLSNTPRLPGVDGRKASKS
                     VGNAIPLTATTDELHRLVQAMYTDPGHARASDPGRVEGNVVFAYLDAFDPDQATVQEL
                     KEHYRGGGLGDVALKRRLEGVLEAFIAPIRIRRAELERDRAYVMDVLRAGSERANVTT
                     EAVLRDVRAAFALDV"
     gene            3369..3707
                     /locus_tag="VLI40_03495"
     CDS             3369..3707
                     /locus_tag="VLI40_03495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96265.1"
                     /translation="MTWVQDSDSPSNREGVKDFGAQRREPATCVGDDVGRVKADLAAG
                     QGEGILYRMLAIAGDRAFHAVFVRRIASRIVHVAIGVAGIACLGAAQSASLEPEQSSF
                     HCRQPNGKLA"
     gene            3704..>4532
                     /locus_tag="VLI40_03500"
     CDS             3704..>4532
                     /locus_tag="VLI40_03500"
                     /inference="COORDINATES: protein motif:HMM:NF015056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HSU96266.1"
                     /translation="MNTRRQFLVTAPLGVLGMLAACNDGAHGSGADSIASGDGLPVAG
                     AAGIAAMQTSVADIPADAPTLNWIPQHKDLVYTFGGAAPRQRIKSGTRIVTWTEDCFD
                     GAVKTAADLPSKKMTAGHDNPQTGPFYIEGAEPGDTVAIHILKLEPARSYAVSSFSPG
                     FGALVGNDQTAMLGPDFPETTWRYDVDAKRTTARATSADGKYAWSVPLAPFLGCIGVA
                     PAGGEVRTTIVPGNFGGNMDCPEVRAGNTVYLGVNVPGALLSFGDGHYAMGEGEIMGA
                     "
BASE COUNT          857 a         1348 c         1444 g          883 t
ORIGIN      
        1 gtgcagatcg acggcatggg tacgtcgaac agatccaagg cgtttcacga tgtcgcgtgg
       61 aaagatctcg ccgatgcagg tttcccggac cgcattctct ggcacaaggc ggtcgccgcg
      121 aagtatccgt actacgacat cacgcgcgtc ggcatttacg gtacgtcagc cggcggccag
      181 agcgcacttg gcgcgctgct ctttcatccc gagttctaca aggccgccgt ttcggctgcg
      241 ggctcgcagg acaaccggat ggacaagatc tggtggaacg agcagtggat ggggtggccc
      301 gttgggcccc agtacgcggc atcgtccaac gtcgacaacg cgtacagatt gcagggcaag
      361 ctgttgctcg ttgttggcga gatggatccc aacgtggatc cgtcatcgac gatgcaggtc
      421 gtcaacgcat tgataaaggc gaagaagtat tttgacttgc tggtgattcc aggtgccggt
      481 catggatctg gcggcccgta cggtgagctc aagcgtttcg acttcttcgt tcacaatctg
      541 ctcggtgtgg aagcaccgga gcggaatcac agtgcggcgt caccggccgc gcaataggag
      601 tgggggcgcc gagttacaag aattaccgta tggcttctcg cgttcgttgt actggccatt
      661 ctctcgatat catcttcgta tgcctcgagt gtttctcacc gcggagtggc ggaatctcgt
      721 catgctcaac tacgcagttg agccatcggt gcttcgctcg tacgtgcctg ccggaaccga
      781 gctggacctg tggaacggta tcgcattcgt cagccttgtc ggctttctgt tcgccaacac
      841 tcggctcctc cgcgtttccg ttcccggcca tcgcaacttt gaagaagtaa acctccggtt
      901 ctatgtccga cggaatgtgg atggcgaagt gcgccgagcc gtcacattca ttcgagagat
      961 cgtaccgcgc gctgcgattg cattcgtcgc agcccgcgcg tacaacgaac cgtatgttgc
     1021 acttccaatg cgccacgagt acggcgacgt cgcgcagaat ggcgctccat cgacggtgga
     1081 atatggctgg cgatgttcaa atcgttggac gaacatgagc gtgcgtcctg ttggctcggg
     1141 cgtcccagct gttgccggct ctcaggaaga attcatcacc gagcactact ggggatatac
     1201 gcgacagcgc gacgggtcga ccttcgagta ccgcgtgatg catgcgccgt ggcgcatctg
     1261 gcacgtcgac gacgctcaac ttaccggcga tctcgcgcag gtgtacggag cggagtttgc
     1321 gcgcatattg agcggtccac ctgtgtctgc gtttctggcg gacggatctc ctgtcacggt
     1381 ccatgcaccg actcggctcc ttccgtctcg tacggcaagt cccgacaccg cgcagtctgg
     1441 cgaggtaccc gggccgtatc ttgacgttta acgttatacg ttatatagtt cgatgtgatc
     1501 cttggattcc gctgcactga cacgcaggtg gtgttcgaaa ccggaaaatc caagcgattc
     1561 tcgcggattc tccgcgttgc gacgcgcaag cttacccaac tcgacaacgc gacggagtta
     1621 agggatcttg cttcgccacc gggcaatcgg ctagaggcgt tgcatggcaa tcgctcggga
     1681 cagcacagca tccggatcaa tgatcagttt cgcctctgtt tcatctggac acagcaaggg
     1741 cctaaaaacg tcgagattgt cgattatcac tgaggagccg gcggcatgac gaagaatggt
     1801 atgcgacccg tacatccggg cgagatattg cgtgaggatt tcctcgcgga gatgggaatg
     1861 agtgcgaacg ccctcgcgaa ggctctccat gtgcctgcac cacgtgtgaa cgacatcgtg
     1921 cgtgagcgga gaggtgtgac tgcggatacc gccctgcgac tcgcacgcta tttcggatcc
     1981 acaccgcagt tctggctgaa tctgcagtct gcatacgatc tgcgtcgcgc cgagatcgcg
     2041 gctggccgca ggatcgcacg cgaggtttca gcgatcaccg atgcggcgta gcggcggagg
     2101 cgagccgtgc tgatgaagtt cgggtacgac cccgattgcc ggtcggagtc acacgtcgag
     2161 cgcgaacgct gcgcgcacat cccgtaatac agcctccgta gtgacgttgg cgcgctcgct
     2221 accagcgcgc aggacatcca tcacgtacgc gcggtcacgc tcgagctcgg cgcgccgaat
     2281 gcgtatcggc gctatgaacg cttcaagaac tccctcgagt cgtcgcttga gcgccacgtc
     2341 gcccagtccg ccgcctcggt agtgctcttt cagctcctgt accgtcgctt gatccggatc
     2401 gaacgcatcg agataagcaa agacgacgtt gccctcgacg cggcccggat ccgacgcccg
     2461 tgcgtgaccg ggatccgtgt acatcgcctg taccagtcgg tggagctcgt cggtcgttgc
     2521 ggtgagcggg atcgcgttgc cgacggactt gctggccttc cggccatcca cgcccgggag
     2581 tcgtggcgta ttcgagagga gcgcgcggca ctcgggtagc acggatgttc cagcaagacg
     2641 attcacgcgc cgcacgatct cgtttgtctg ctcgatcata ggaagttgat cgtcgcccac
     2701 cggaacgagc gtcgcgcgga agccggtgat gtcggcagcc tggcttaccg gataacagag
     2761 aaaaccggcg gggatgtcgc gctcgaaacc gcgcagctcc acctccgcct tcaccgtcgg
     2821 attgcgctcg agccgcgcga ccgtgacgag attcaggtac agcaccgtca actcggccag
     2881 cgcactcagt cgtgactgca cggcgatcgt cgtctgggcc gggtctattc cgacggcgag
     2941 atagtcaagg gcgatctcag gtacgtgccg agcaacgtgc gcggcacgtc cgctcgagtc
     3001 ggtgagcgcc tgaaggtcgg cgatcagcag cgtatgcgca catcggccct gaagggctaa
     3061 ccgcgagcga agcgagccgg catagtgccc gagatgcagc ggtccggtgg ggcggtcgcc
     3121 ggttagtatg acgtcggttg cgtcagactg gttttgacgt tcgtcgtcgc gacggtgcgc
     3181 cgccatgctg gtagacattg tgtgaagctc ctcgtaacgt gagcgaggtc ggctcggcac
     3241 cgggcgaaac gcaatgggcc gctcgatgac gagcgacccc gaagttgtgc gcagtcggat
     3301 ggaactgcgc gaatgggccg ctcagagaga gggccaccgc caggacatca gtgagtgcgc
     3361 gaccgagtat gacatgggtt caagatagcg actcgccgag caatcgcgaa ggcgtgaagg
     3421 acttcggcgc gcagcggcgc gagccagcga cgtgcgtcgg cgacgacgtg ggccgtgtaa
     3481 aggcagatct tgcggcggga caaggcgagg gcatcttata ccgcatgctc gcaatcgctg
     3541 gcgaccgcgc atttcatgcg gtgtttgtaa gacgaatagc gtcacgcatc gtccacgtgg
     3601 cgatcggcgt cgccggtatt gcatgtctcg gcgcggcgca gtcggcttcg ctggagcccg
     3661 agcaatcgtc attccactgt cgccaaccca atggcaaact agcatgaaca cacgcaggca
     3721 gtttctcgtc accgcaccgc tcggtgtact cggcatgctc gcagcgtgca acgatggcgc
     3781 gcatggctcc ggcgctgatt ccattgcgtc cggtgacgga ttgccggtgg ccggcgcggc
     3841 cggcatagcg gcgatgcaga ccagcgtcgc agatatcccc gccgatgcac caacgctcaa
     3901 ctggataccg cagcacaagg atctcgtcta cacgttcggc ggtgcggcgc cacgccagcg
     3961 aatcaagtca ggcacgcgca tcgttacctg gacggaagac tgcttcgacg gcgccgtgaa
     4021 gaccgcggcg gatctcccgt caaaaaagat gaccgccggt cacgacaatc cgcagaccgg
     4081 gccgttttat atcgagggcg cggagccggg agatacagtc gcaattcaca tcctgaaact
     4141 cgagcccgcg cgctcgtacg cagtgtcgtc gttcagcccc gggtttggtg cgcttgtcgg
     4201 caatgaccag actgcgatgc tgggaccgga ttttccggag acgacgtggc gatacgatgt
     4261 ggatgcgaag cgcaccacgg cccgagcgac gtccgccgac ggcaagtacg cgtggtcagt
     4321 gccgctggct ccttttcttg gctgtatcgg cgtcgcgccg gccggcggtg aagttcgcac
     4381 tacgatcgtg ccgggcaact tcggcggcaa catggactgc cccgaagtcc gcgccgggaa
     4441 cacagtctac ctcggtgtga acgtgccagg cgcgctactg tctttcggcg atgggcacta
     4501 cgcgatgggc gagggcgaga tcatgggagc cg
//
LOCUS       DATIMD010000155         5444 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4682149, whole genome shotgun sequence.
ACCESSION   DATIMD010000155 DATIMD010000000
VERSION     DATIMD010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5444)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5444
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4682149"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..522)
                     /locus_tag="VLI40_03505"
     CDS             complement(<1..522)
                     /locus_tag="VLI40_03505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96267.1"
                     /translation="MYAGHIGFGLGAYSFRKTLPLWLVLVAAQIPDWLDAGYCVADIS
                     RGPYGMYTHGFIPVGIAAIVFGLTAYALTRDVTGTAIVVLVVVSHWVLDYFTGIKPTW
                     PGGPIVGMNLYARPLVDFALESATILVGWLLYRRTLPQSVRNHGWTYATLLMLCTLQV
                     LAGAAFALSLGGHA"
     gene            complement(522..644)
                     /locus_tag="VLI40_03510"
     CDS             complement(522..644)
                     /locus_tag="VLI40_03510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96268.1"
                     /translation="MPIHLVKGLTLALALLAPVVTTLFFHSRTLAAARRQGQVK"
     gene            complement(701..2479)
                     /locus_tag="VLI40_03515"
     CDS             complement(701..2479)
                     /locus_tag="VLI40_03515"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSU96269.1"
                     /translation="MSGNLSASRGAALDSTGAERTYDDVLASEARFRAVFDHSAVGIA
                     LIETDGRIIATNPALQQFLGYSSEELLNRRLYHLVPEDDANGLAAALAAISSGASPEL
                     AIEQRHTRRDGEIVWAALTMSRAHSAASGESLGVIAMVQDIRTRKSLEERLTHQASHD
                     PLTDLANRTLFRQRVEIALQRAAHRDRVVVMFLDVDNFKAVNDSAGHSAGDQLLVVAA
                     GRLLNATRGSDTVARLGGDEFAILLENVRDDEEARIVADRITRTMRQPIQIGNETVIV
                     GISIGIARPHSDSEGADEVLRNADVAMYTAKGSGKNRYQFFEPSMHTAVVDRIALETD
                     LRHAVAVPASEFVLHYQPLVQLDTDAVVGVEALVRWNHHSRGELQPADFITIAEETGL
                     IIPLGRWVLREACAQAFAWWHTLPDEHRMSIAINVSGKQIQEATFVSDVAAALADSGL
                     APARLVLEITETVIMHRTEVMMQRLAELKELGVHLAIDDFGTGYSSLSYLQQFPIDII
                     KIDKAFIDGMERDPAGAALTRTIIGLGYTLGLTTVAEGIEHPSQRAALEDLGCVMGQG
                     FLFARPSIAASVGDDVSKPNKTPESK"
     gene            complement(2578..3216)
                     /gene="queE"
                     /locus_tag="VLI40_03520"
     CDS             complement(2578..3216)
                     /gene="queE"
                     /locus_tag="VLI40_03520"
                     /EC_number="4.3.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase"
                     /protein_id="HSU96270.1"
                     /translation="MAYTVKEIFYTLQGEGANAGRAAVFCRFSGCNLWTGRESDRANA
                     VCTFCDTDFVGVGPDGGKFADAEALADAVESAWNPNTEDGAERFVVCTGGEPLLQLDE
                     PAVEALHRRGFRVAVETNGTQPAVAGLDWICVSPKADAALVIEAGDELKLVYPQERAM
                     PDRFANLGFTHFFLQPMDGPALEQTTRAAIDYCLDHPKWRLSVQMHKVAGIR"
     gene            complement(3221..3922)
                     /gene="queC"
                     /locus_tag="VLI40_03525"
     CDS             complement(3221..3922)
                     /gene="queC"
                     /locus_tag="VLI40_03525"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HSU96271.1"
                     /translation="MSHKPPAVILLSGGLDSTTVLAIAQRDGYEVNALSFIYGQRHDR
                     EIDAARRIAGRYGVARHEVVTIDLRVFGGSALTSDIAVPRGRDVKASTDVPITYVPAR
                     NTIFLSYALAFAEVTNARDIFIGVNALDYSGYPDCRPEYIHAFERMANLATRAGTEGN
                     TINVRTPLIDLTKAQIIALGTSLGVDYSITTSCYDPSATGEACGECDACQLRLAGFNA
                     AGIADPIAYIPAGRA"
     gene            4027..4992
                     /locus_tag="VLI40_03530"
     CDS             4027..4992
                     /locus_tag="VLI40_03530"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF004771.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine dehydratase"
                     /protein_id="HSU96272.1"
                     /translation="MTAVLPSLSDLESATRIIRGLMPPTPQYSWPLLAERTGAHVIVK
                     HENHTPVGAFKVRGGIVYMDHLRRHTQQVPGIVTATRGNHGQSIPFAARRYDIPVLVV
                     VPHGNSVEKNNAMRALGADLVEEGHDFQAAIEVADRIAAERGWHRLPSYHPHLVSGVG
                     TYALELLRAAPDMDTVYVPIGLGSGICGMIAARDALGLATRIVGVVSSGAPAYALSMA
                     AGHPISHPVTTEIADGMACRTPLAEPLEIIMRGAERIVQVSDAEVGEAMRAYFTDTHN
                     VAEGAGAASLAALMQERELMRGRKVGVVLSGGNVDREVFARVLAQ"
     gene            5033..>5444
                     /locus_tag="VLI40_03535"
     CDS             5033..>5444
                     /locus_tag="VLI40_03535"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSU96273.1"
                     /translation="MLLRKSFCLVALVATQPLAAQRTILPPGWDAFTQTFDRYSARDS
                     IVGGSVVVMHDGKVVARHEYGFADKGSGKRIDDNSIFHYGSITKTLTAISIMQLRDRG
                     KLSLDDRVTSYIPELRKVHDPYGSMDSVTIRMLMS"
BASE COUNT         1040 a         1634 c         1715 g         1055 t
ORIGIN      
        1 tgcgtgacct ccaagactga gtgcgaatgc ggctcctgca agtacctgca acgtgcacaa
       61 catcagcagt gtggcatatg tccaaccatg attcctcacg gactgcggaa gcgtacggcg
      121 atacagcagc catcccacga ggatcgtcgc cgactccagc gcaaaatcga ccagcggacg
      181 cgcatacaga ttcataccca cgatcggccc gcccggccat gtgggcttga tgccggtgaa
      241 ataatccagt acccagtgcg acacgacgac gagtaccacg atcgccgtgc cggtcacatc
      301 gcgggtgagt gcgtatgcag tcaatccaaa gacaatcgcc gcgatgccga cgggaatgaa
      361 gccgtgtgtg tacatgccgt atggtccgcg gctgatgtcg gcaacacagt atccggcgtc
      421 gagccagtcc ggaatctgcg ccgcaacgag cacgagccac agcgggaggg tcttccggaa
      481 agagtatgcg ccgaggccaa agccgatgtg cccggcatac actatttcac ctgtccctgg
      541 cgtcgtgccg ctgcaagcgt tcggctgtga aagaaaagcg tggtgacgac tggcgccagc
      601 agcgcgagtg cgagggtaag gcctttgacg agatggatcg gcattccggg ggtcgtttgt
      661 ttggcgctct tgaggagcac ctaacaaact tagcgggcga tcacttgctc tctggagtct
      721 tgttcggctt gctgacgtcg tcgcctacac tggcggcgat cgacggtcgc gcgaacagga
      781 atccctgacc catcacgcac cccagatcct cgagcgctgc gcgctgcgat ggatgctcga
      841 tcccctcggc gacggtcgtc aggcccaggg tatagccgag cccgatgatc gtacgggtga
      901 gggcggcacc ggccgggtca cgctccatgc cgtcgatgaa cgccttgtcg atcttgatga
      961 tgtcgatcgg gaactgttgc agataactga gagacgagta gcctgtaccg aaatcgtcaa
     1021 tggcgagatg aacccccagc tccttcagct cggccaatcg ctgcatcatt acttccgtgc
     1081 ggtgcatgat gaccgtttcg gtgatctcga gcaccagtcg cgcaggggca agtccggaat
     1141 cggcaagtgc ggccgcgacg tctgacacga aggtcgcctc ctggatctgc ttgccggaca
     1201 cgttgatggc gatgctcatg cgatgttcat caggcagggt gtgccaccag gcgaaggcct
     1261 gcgcgcaggc ttcgcgaagc acccaccggc ccagtggaat gatgagcccg gtttcctctg
     1321 cgatcgtgat gaaatcggca ggctgcagct cgccgcggct gtgatgattc cagcgcacga
     1381 gcgcttcgac gccgacaacg gcgtccgtat cgagctggac gagtggctga tagtgcagca
     1441 cgaattccga tgccgggact gccacagcat ggcgcaggtc ggtttcgagg gcgatccgat
     1501 cgacgacggc cgtgtgcatc gacggctcga agaactgata gcgattcttg ccggacccct
     1561 tggcggtgta catcgcaacg tcggcgttgc ggagcacttc gtcagcaccc tcactgtccg
     1621 aatgaggccg tgcgatgcct atgctgattc cgacgatcac cgtttcattt ccgatctgga
     1681 tcggctggcg catcgtgcga gtaatgcgat ccgcaacgat cctcgcctcc tcatcgtcgc
     1741 gtacgttctc gagcaggatg gcgaactcgt cgccgcccaa acgtgcgacg gtgtcggatc
     1801 cacgcgtcgc gttgagcaat cgccccgctg cgacgacgag gagctggtcg cccgcgctgt
     1861 gtcctgcgct gtcgttcacc gccttgaagt tgtcgacgtc gagaaacatc acgaccacgc
     1921 ggtcacgatg tgccgcgcgt tgcaacgcaa tctcgacgcg ttgcctgaac agcgtgcggt
     1981 tcgcgagatc cgtaagcgga tcatgcgatg cctgatgcgt gagtcgctct tcgagcgact
     2041 tgcgcgtacg tatgtcctgg accatcgcga tgacgccgag cgactcgccg ctggcggcgc
     2101 tgtgagcacg cgacatcgtc agcgccgccc acacgatctc gccgtcgcgt cgagtatgcc
     2161 gctgctcgat cgccagctcg ggactcgcgc cgctcgaaat tgcggccagc gccgcggcga
     2221 gaccgtttgc gtcgtcttcg gggacgaggt ggtacagcct gcgattcaac agctcttcac
     2281 ttgagtagcc gaggaactgt tgcagggctg gatttgttgc aatgatccga ccgtcggttt
     2341 cgatgagcgc gatgccgacg gcggagtggt cgaagaccgc tcggaagcgc gcctcgctgg
     2401 caagcacgtc gtcgtacgtc cgctcagctc ccgtggagtc cagggccgcg ccgcgcgatg
     2461 cgctcaagtt accggacaag ggtcagtccg tatccgcatc tggtcgtcgc gctcatcgac
     2521 ttacgacgcg tacggtggcc ggccggcaac agtgcgacgc tcgaagcggc gcaaaggtca
     2581 gcggattccg gcgaccttgt gcatctgcac cgaaagccgc cacttcggat ggtcgagaca
     2641 atagtcgatc gctgcccggg ttgtctgctc cagcgccggc ccgtccatcg gctgaaggaa
     2701 gaagtgagtg aacccaagat tcgcgaaacg atccggcatg gcgcgttcct gtggatagac
     2761 cagcttgagt tcgtcaccag cctcgatcac gagcgccgca tcggccttgg ggctcacgca
     2821 gatccagtcg aggccggcaa cggccggctg cgttccgttg gtttctacgg caacgcgaaa
     2881 ccctcggcga tgcagagcct cgacagctgg ctcgtcgagt tgcaggagtg gctcgccgcc
     2941 ggtgcacacc acgaagcgtt ccgctccgtc ttccgtattc ggattccacg ccgattccac
     3001 cgcgtcggcg agtgcttcgg cgtccgcgaa ctttccgccg tcaggtccga caccgacgaa
     3061 atcggtgtcg cagaacgtac agactgcatt ggcgcggtcg ctctcgcgac ccgtccacag
     3121 attgcaacct gaaaaacggc agaacaccgc ggcgcggccg gcgtttgctc cttcgccctg
     3181 caaggtgtag aagatttcct tgactgtgta cgccatcgct ctaagcgcgt ccagcgggga
     3241 tgtacgctat cggatcagcg attccagctg cgttgaaacc cgcaaggcgc aactgacacg
     3301 catcacactc gccgcacgct tcgccagtag ctgacgggtc gtagcaactc gtggtgatcg
     3361 agtagtcgac gccgagtgag gtgccgagcg caatgatctg cgccttggtc aggtcgatga
     3421 gtggtgtgcg aacattgatc gtattgccct cggtgcccgc ccgggtcgcg agattggcca
     3481 tgcgctcgaa tgcgtggatg tactcaggcc ggcagtcggg atatccggag tagtcgagtg
     3541 cattgacgcc gatgaatatg tctcgtgcgt tggtgacctc ggcgaacgcg agcgcgtacg
     3601 acagaaaaat cgtgttgcgg gctggtacgt aggtgatcgg cacgtcggta gacgccttca
     3661 cgtcgcgtcc cctgggcaca gcaatatccg aagtgagggc ggagccgcca aacacgcgaa
     3721 gatctatcgt gacaacctca tgacgtgcga cgccatacct gcccgctatg cgccgcgcag
     3781 cgtcgatctc gcgatcatgt ctctgcccat agatgaacga gagcgcattg acctcatagc
     3841 catcgcgctg ggcaatggcg agcacggttg tggagtcgag gccgccgctc agcagaatga
     3901 cggcgggagg tttgtgagac atggtgaaat ctacaacagg ccgttggcca caggctccct
     3961 ttgcgatggg tgcctgggga gcccatcgcg tcgccgacag tgccgacaac gagtattttg
     4021 attggcatga cagccgtcct tccatcgttg agcgatctcg agtccgcgac cagaatcatc
     4081 cgggggttga tgccgccgac gccacaatat tcgtggccgt tgcttgcgga gcgtaccggg
     4141 gcgcatgtga tagtcaagca cgagaatcat acgccggttg gtgctttcaa ggtgcgcggc
     4201 ggaatcgtgt acatggatca tcttcggcgt cacacgcaac aagtgcccgg catcgtgacg
     4261 gcgacgcgcg gcaaccatgg ccagtccatc ccctttgctg ctcgacggta cgacattccg
     4321 gttctggtcg tcgttccgca cggtaacagc gtggagaaga acaatgcgat gcgggcgctg
     4381 ggcgccgatc ttgtcgagga agggcatgac tttcaggcag caatcgaggt ggctgaccgg
     4441 atcgccgccg agcgcggttg gcacaggctc ccgtcgtacc atccacatct ggtgagtggt
     4501 gtcggcactt atgcactcga actgcttcgt gccgcgccgg acatggatac cgtatacgtg
     4561 ccgatcgggc tcggctccgg aatctgcggg atgatcgcgg cgcgtgatgc tctgggactc
     4621 gctaccagga tcgtcggcgt cgtctcctcg ggcgctccag cgtatgccct ctcgatggcg
     4681 gcgggtcacc cgatatcgca tcccgtgacg actgagatcg cggatggaat ggcgtgccgc
     4741 actccactcg cggagccgct cgagatcatc atgcgcggcg ccgaacgaat cgtgcaggtg
     4801 agcgacgccg aagtggggga agcgatgcgt gcgtacttca ccgatacgca taacgttgcc
     4861 gaaggcgccg gtgccgcgtc gcttgcggca ctgatgcagg aacgcgaact catgcgcggc
     4921 cgcaaggttg gcgtggtgtt gtccggcggc aatgtggatc gcgaagtctt tgcacgggtg
     4981 cttgcccagt agatccttcg tagatccttc accgatttcg tgatgtgaaa caatgctctt
     5041 acgcaaatca ttctgtctgg tagcgctcgt cgcgacgcaa ccccttgcgg cgcagcgaac
     5101 gattcttccg ccgggttggg acgcattcac gcagacgttc gaccggtatt ctgcgcgcga
     5161 cagcatagtt ggcggaagtg tcgtcgtcat gcacgatggc aaggtggtgg cgcggcacga
     5221 gtacggtttt gcggacaagg ggagcgggaa acgtatcgac gacaactcga tcttccatta
     5281 tggctcgata accaagacgc tcaccgcgat ctccatcatg cagttgcgtg atcgcggcaa
     5341 gctgtcgctg gacgatcgcg tcaccagcta catacccgag ctgagaaagg ttcacgatcc
     5401 atacggatcg atggacagcg tcacgatcag gatgctgatg tcgc
//
LOCUS       DATIMD010000156         3417 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2079885, whole genome shotgun sequence.
ACCESSION   DATIMD010000156 DATIMD010000000
VERSION     DATIMD010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2079885"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..349
                     /locus_tag="VLI40_03540"
     CDS             <1..349
                     /locus_tag="VLI40_03540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96274.1"
                     /translation="AEWLDHCAGEPEALQKISAFPFLLPVRQSMLIVIWLLFGLISAV
                     VATNKGRSGCGWFTLGVLLGPFGFILALLVSPNRPAVEEQAVRSGDMKKCPFCAELIK
                     KEAIKCRFCGEQV"
     gene            945..1529
                     /locus_tag="VLI40_03545"
     CDS             945..1529
                     /locus_tag="VLI40_03545"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSU96275.1"
                     /translation="MTRTHVLVMAAICLPTALSAQQSPAPAQPATNPIVQSFRDFGGH
                     YGGLLLVAFDSIPASRYGYRPTPSQQSVGHIAQHLESANYTLCERIGGMKHPTGPKDS
                     LADTIKATWPKDTLVARLRTSLLFCRDAFARLDDAKLTDAVPEGPPESGQTSPRVRSL
                     LYFVTDLAEHYSQIASYMRLMGMIPPSALPRPNR"
     gene            complement(1700..2440)
                     /locus_tag="VLI40_03550"
     CDS             complement(1700..2440)
                     /locus_tag="VLI40_03550"
                     /inference="COORDINATES: protein motif:HMM:NF019359.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HSU96276.1"
                     /translation="MHEFAELAGVTVRALHHYDRLGLLKPTARTDARHRLYSDRDLAR
                     LEQIVVLKFIGLPLGEIRDLLHDHVHEDFAVADALARQQRVLAAKRDRINHTILAIAQ
                     AERSLRSAGRPDWTEFSHIIQEVEMQSNAEWSKKYYSPEAKVKVEERRARWSPELQEQ
                     VSRDWAQLFGDIEAALGEDPASTRARALADRWCKLVEGFTGGDPEIQKGLNAMYADQP
                     NWPAESRARFQIKPEIQEFIVKAMRARV"
     gene            2822..>3417
                     /locus_tag="VLI40_03555"
     CDS             2822..>3417
                     /locus_tag="VLI40_03555"
                     /inference="COORDINATES: protein motif:HMM:NF025157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic/DOC family N-terminal domain-containing
                     protein"
                     /protein_id="HSU96277.1"
                     /translation="MPFSPSTPEHTARAGRKVRQPTGYSAFIPAPLPPNPPVALAGEL
                     HSLLSKADWALGRLDGSVTTLPNPDFLVFMYVRKEAVLSSQIEGTQSSLQDLLAAETE
                     LFDPAELPRDVDDVINYVAAMRHGLARLDEVPVSVRLIREIHARLLDGVRGSRLTPGD
                     LRKSQNWIGPRGCTIADATFVPPPPEEVPRALGDLESFL"
BASE COUNT          641 a         1083 c          991 g          702 t
ORIGIN      
        1 ggctgaatgg ctagatcatt gtgccggtga acctgaagcg cttcaaaaaa tcagcgcttt
       61 cccattcctc cttccggttc gtcaatccat gttgattgtc atctggctcc tcttcggtct
      121 gatcagcgcc gtggtagcca ccaataaggg acggagcggc tgtggatggt tcacgcttgg
      181 tgttctcctg ggtccattcg gtttcatcct ggccctcctg gtatccccga atcggcccgc
      241 ggttgaagaa caagccgtac ggtccggcga tatgaaaaaa tgtccgttct gcgctgagtt
      301 gatcaagaag gaagcgatca aatgtcgctt ctgcggtgag caagtataga ctgccgcggc
      361 gtttgatttc cagcgtgtcg tgacactcac tcatgcctga ggcctggtct ccagatgcgc
      421 ttcccgctgc tactgacggt gaccatcctt gcgcttccat ttctcgcgca agtatctgcg
      481 cgcgcgccga tgcccatcgt ccgctccaaa ccggattcaa gtctaacgac gcgttttgca
      541 ggctgttatc aactctccgt ggcctcgcgt agcatgtacc ggctccgcct cacgcagcgt
      601 catgtcggaa gcgcttggga cgtgcgtgcg tacgggccag gcgcgcgcaa tgtagctggc
      661 gactcgtgga gatggtcgcc gaccgacacg atggggttcc gcatatcgtg gaacggaatc
      721 gacagcgcga tggagttcga tatcgcgcgc cgaggtggca cactcgtgac gcaagggact
      781 atgtaccaag cgcgtgcgcc aactcggacc ataccgctcg atgcgcacat tcggcgtgtc
      841 acgtgcccgg cgatcgttgc ctgacgactc gtctgttgca gctcgctgct ggccgttggc
      901 tgaagcatca gtcgttgttc agttcccctc attccggata atgcatgacg cgcactcatg
      961 tactcgttat ggctgcaatc tgtctcccca cggcgctcag cgctcagcaa tcgccagctc
     1021 ccgcgcaacc ggcgacgaac ccgatcgtcc aatcgttccg cgactttggc ggacactacg
     1081 gcggcttgct gctcgtcgca ttcgactcca ttccagcgag caggtatggt taccgaccga
     1141 caccatcgca gcagtccgtg gggcacatcg cccagcacct cgagagcgcg aactatacgc
     1201 tgtgtgagcg catcggcggc atgaagcacc caacagggcc gaaggactcg ctggcggata
     1261 cgatcaaggc cacatggccc aaggacacgc tcgtcgcgcg gcttcggacg tcgctgcttt
     1321 tctgccgcga cgcatttgcg cgactggacg atgcgaaact gaccgatgca gtaccggaag
     1381 gacctccgga atcgggccag acgtcaccgc gcgtgcgctc gctcctctac ttcgtgactg
     1441 acctcgcgga acactacagc cagatcgcga gctacatgcg gctcatgggg atgatcccgc
     1501 cgtcagcact gccgcgtccg aatcgctgaa cgcgcagcgg ggctcgcagc gtattgttgg
     1561 tgtcaggtga cgcgatgaag tgtgacgtga tgatgaccac gcgagcggtt cgcggctaga
     1621 ggaacgctga aaggtcatcg cacgccgacg ggtgagtgag ttcactcacc cgttggctct
     1681 ccagctgacg tcggaggcat cacacgcgtg cgcgcatcgc cttcacaatg aattcctgga
     1741 tctccggctt gatctggaat cgcgcgcgcg attccgctgg ccagttgggc tggtcagcat
     1801 acatggcgtt cagccccttc tggatctccg gatcaccacc ggtgaatccc tcaaccagct
     1861 tgcaccaccg gtcggcgagc gcccgggccc tggtgcttgc gggatcctca ccaagcgccg
     1921 cttcgatatc cccaaagagc tgcgcccagt cgcgtgaaac ctgctcctgc agctcgggtg
     1981 accagcgcgc gcgacgctcc tccaccttca ccttcgcctc ggggctgtaa tacttttttg
     2041 accactccgc gttgctctgc atctctacct cctgtatgat gtggctgaac tcggtccagt
     2101 cgggacgacc cgcggacctg agagatcgct ctgcctgggc gatcgcgagg atcgtgtgat
     2161 tgatccgatc gcgtttcgct gccagcactc gctgttgccg cgcaagtgcg tccgctacag
     2221 cgaaatcctc gtgcacatga tcgtgtagca ggtcgcgaat ctctccgaga ggcaggccta
     2281 tgaacttgag cacgacgatc tgttcgagtc gggcgagatc gcggtcgctg taaaggcgat
     2341 ggcgtgcgtc ggttcgagcc gtgggcttga gcaacccaag gcgatcatag tgatgcagcg
     2401 cgcgcaccgt cacgccggca agctcggcga actcgtgcac tcggtacaaa gtcgtgttgc
     2461 agtccatatc ctgcctccaa ccacagcata cgctctgacg taacgtcaga gtcaagagcc
     2521 tattttgaca ccgcaaaacc tgccgggcaa tctgtgcgca ccggcctagt tgccgaagag
     2581 ccctgccgca ggccgcctcc attgtctcgt tgcaatacaa tcagcagggt acaacccgct
     2641 cgcaggggct cacctttgtc gaccggagct gcgggggcgc cttctcgcat taatagaacg
     2701 atcgttcgac acgcctaacc attgatccac ttgcccataa tacagattgc ttcttgacgt
     2761 atattatcgg cagccgataa tatggggcaa taaccccaac atatgccccg cagccgataa
     2821 tatgcccttc tccccatcca ccccagagca tacggcgcgc gcgggacgca aggtgcgcca
     2881 gccgaccggc tacagcgcct tcattccggc accactaccg ccaaacccgc ccgtggcgct
     2941 cgctggagag ctgcactccc tgctgtcgaa ggccgactgg gcactcggcc ggctcgatgg
     3001 atcggtgacc accctcccga acccggattt cctcgtcttc atgtatgtgc gcaaggaggc
     3061 ggtgttgtcg agtcagatcg aggggacgca gagctcgctg caggatctgc tcgccgcgga
     3121 gacagagctg ttcgatcccg ccgagttgcc gcgtgatgtg gatgatgtga tcaactatgt
     3181 cgctgcgatg aggcacggac tcgcgcggct ggatgaagtc cctgtgtcgg tacgactgat
     3241 tagagagatc cacgctcgcc tgctggacgg cgtgcgcggc tcgcggctca caccggggga
     3301 tctcaggaag tcgcagaact ggatcggacc acgcggatgc acgatcgccg atgcgacttt
     3361 cgtcccacct ccgcccgaag aagtgccacg cgcactcggc gatctcgaat cgttcct
//
LOCUS       DATIMD010000157         7101 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_639152, whole genome shotgun sequence.
ACCESSION   DATIMD010000157 DATIMD010000000
VERSION     DATIMD010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7101
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_639152"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2091)
                     /locus_tag="VLI40_03560"
     CDS             complement(<1..2091)
                     /locus_tag="VLI40_03560"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 metallopeptidase family protein"
                     /protein_id="HSU96278.1"
                     /translation="MMKISRQSLRRAILGATIVLAPAGAIVIPSLARAQQSADASINA
                     SITTPKQQFGHNIGDDYWLANYDQFSAYWHKLAGESDRMKLVDIGKTEEGRTQLMAII
                     SSPENMKHLDRYKEISARLAHAEGLTDAQAHALAAEGKAVIWIDGGLHASEVLGAHQL
                     MQTVYDLLSRNDPETRRILNDCIILAVHDNPDGMQLVSNWYMKDADTLKRNEDVPRLW
                     QKYTGHDNNRDFYMSNQAETKNINHVLYWEWFPQIVYNHHQTGPAGAVMFSPPFRDPF
                     NYNYDPMIVTDLDLIGAAMHDRFNREHKPGVVTRSAANYSTWWNGGLRTTPYFHNMIG
                     LLTEAIGNPTPEKIPFVPEMQLPRADVPYPIAPQEWHFKQSIDYEVTANYAVLDLASR
                     QKDEFLYDLYAMGRNSIEKGSHDTWTISGDRIAAVDSAVAADQTGARGTRGAAAAGRS
                     RGVDDKYYTSVLHDPSKRDPRGYIITTDQPDFLTAVKFVNTLRHNGITVQRATAAFTV
                     NGKQYPAGSFVVKTAQAFRPYVIDMFEPQDYPNDFPYPGGPPTRPYDNTGYTLAYMMG
                     VHFDRILDAFNGPFETVNGLASPPAGTVADAGGAAGFLFSHAENDAFTVVNRLLKNHA
                     DVYWLKEPVTAQGKTYPAGTFYVSVGSAAMPVITKAAKELGVSFQGTSTRATANDTKL
                     KQERLALWDMYGGSM"
     gene            2203..2610
                     /locus_tag="VLI40_03565"
     CDS             2203..2610
                     /locus_tag="VLI40_03565"
                     /inference="COORDINATES: protein motif:HMM:NF022963.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3224 domain-containing protein"
                     /protein_id="HSU96279.1"
                     /translation="MRADRATGTFDVKLNPLAAYSADDTSMGRMSIDKQFHGDLQATS
                     KGEMLSSMDRNSGSGAYVAIERVTGSLGGREGSFVFYHVGTMNRGEPQLSVRVVPDSG
                     TGQLAGLTGTMTIDIDAGNHSYGFDYSLPESAV"
     gene            complement(2669..3490)
                     /locus_tag="VLI40_03570"
     CDS             complement(2669..3490)
                     /locus_tag="VLI40_03570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96280.1"
                     /translation="MRIHLLTAGSAPSGVYAVPGGVAGHPFAFIGVIPFTVKRGEYLD
                     DYHIGFWPAELHAVQSEAYENPAGFVEVTAENADTPISDHFTLGDFVTHDGAPFPKYI
                     VLREELLDKIELVLSDLEMHGVATEHVKVLSGFRTPSYNFALGDASGRARESRHQYGD
                     AVDMIVDADGDGRMDDLNHDGRVDAGDVHVIEAAVDRVERAHPELAGGLGLYREMGPS
                     GPFAHIDVRGTRARWGTADRRVYASRVSSYSSAPSSHCQADGASAVLCQGFRHTR"
     gene            3483..3635
                     /locus_tag="VLI40_03575"
     CDS             3483..3635
                     /locus_tag="VLI40_03575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96281.1"
                     /translation="MRTRPLEPVLVSPRSVAGTAESAEGVEGVAIGGVGATLTRAGLV
                     ETVPVA"
     gene            3888..6047
                     /locus_tag="VLI40_03580"
     CDS             3888..6047
                     /locus_tag="VLI40_03580"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HSU96282.1"
                     /translation="MHRSAPLATALLLATLAVPSAAQQAPSSKRAFTPADYYKITNLA
                     APEISPDGKLVAFTVTTVKEKDNKRHSEVWIVPTTSGAPTRYTSSGFESSNPHFSPDG
                     KYLFFTSRRPEGKGARWALRMDVPGGEASQMEDYPNATSVSADHRIGVWADTVDGPAR
                     DTSKRAAGPYGAMGKLSRPPFDAITKPIDAKRFDGMQFTDMRFKSNDAGFVASRSEPR
                     RYSAAQIWIQSYDGTPKKMLTNTTYSHRDVVISPDGKSVAFIADAELRPDSVVEAERD
                     SLAKLPYDSARDERTRDDADVFVIPADGSGAPRRVTRFAGMKRSLQWSPDSRSISFTS
                     APSRVKSQRIYVANISDGNPQNVLGEFKYEPQQYQWTPKGDIVMSAAVGGRAALFTVN
                     PKTKTAKEILGGRRALRGWDINAQHDQIAFIATDMTHPTELFIADANGAHERKLTGFN
                     DKVNSEIAFADGERFTYNSVGGLEIEGWLMKPYGYQAGKKYPLVLYIHGGPHSQYDEG
                     WFDEFQNLAGAGMMVLFTNPRGSSGYGADFTYSTRGRWGAEDYTDLMKAVDIAAARPD
                     VDSTRMGVTGGSYGGYMTAWIETKTDRFKAAQTDRMISDWTYWYGASDAQGLTEFEFY
                     GKPWDNFAMYDSLSPIRHVTKVRTPTLLVQSENDFRAPIGDAELWYLALKKQGVPAEF
                     VRYPRSTHELSRSGEPWLLVDRLGRIRQWFSHWLEAA"
     gene            6044..>7101
                     /locus_tag="VLI40_03585"
     CDS             6044..>7101
                     /locus_tag="VLI40_03585"
                     /inference="COORDINATES: protein motif:HMM:NF027814.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 27 protein"
                     /protein_id="HSU96283.1"
                     /translation="MKILTGIAVLSLALVGASAPQSSHAYVDNGLALTPPMGWNSWNH
                     FGCNVSESLIRETADSMAANGMRDAGYKYVVIDDCWQVARAADGTIIADSTRFPHGIA
                     ALADYVHSKGLKFGIYTDAGTKTCQGRPGTYGHEEQDARTYAAWHVDYVKEDWCNATG
                     LDAPTQYAKFRDALAHSGRNIVFSICEWGHNQPWGWAPQTGNLWRTTEDIEDKWPSML
                     TNLDISAQHSAIARPGAWNDPDMLEVGNGGMTDGEYRAHFSMWAIMAAPLLAGNDVRT
                     MSAATKAILLNPEVIAVDQDSLGAQGVIVWEPTPELQVWSKRLHDGSIAVALLNRSAA
                     AAKISANFWRAGLHVSSAT"
BASE COUNT         1434 a         2237 c         2088 g         1342 t
ORIGIN      
        1 catcgatcca ccgtacatat cccacagcgc aagccgttcc tgcttgagct tggtatcgtt
       61 cgccgttgcg cgtgtgctcg ttccctggaa gctcactccg agctccttcg ctgctttcgt
      121 gatcaccggc atcgccgctg atcccactga aacgtagaac gttccagctg gatacgtctt
      181 cccctgagca gtgaccggtt ccttcagcca gtacacgtcc gcgtgattct tgagcaggcg
      241 attcacaacc gtgaacgcgt cgttctccgc gtgcgagaac aggaatcccg ccgcgccacc
      301 agcgtctgct acagtgccag ccggcggact tgcaagtccg tttacagtct cgaatggtcc
      361 gttgaaggcg tccagaatac gatcgaagtg cacgcccatc atgtacgcga gcgtgtagcc
      421 ggtgttgtcg tacggccgcg ttggcggacc gccaggatac ggaaagtcat tcgggtaatc
      481 ctgcggctcg aacatgtcga tcacgtatgg acggaacgcc tgcgcagtct ttacgacgaa
      541 tgagccggcc ggatactgct ttccattcac agtgaatgcc gccgttgccc gctgaaccgt
      601 gataccattg tgccgcagcg tgttgacgaa cttcaccgcc gtgagaaagt cgggctgatc
      661 ggtcgtgatt atgtagccgc gcggatcacg cttcgatggg tcgtgcagca cgctggtgta
      721 gtacttgtca tcgactcctc tggaccgacc ggcggcggca gcaccgcgcg tgccgcgtgc
      781 tccggtctga tctgccgcaa ccgcggaatc cacggctgcg atccggtcgc ccgatatagt
      841 ccatgtgtca tgactgccct tctcgatcga gttgcggccc atcgcataga ggtcgtacag
      901 aaattcgtcc ttctgccgcg atgcgagatc gagcacggcg tagttggccg ttacttcata
      961 gtctatggat tgcttgaagt gccattcctg cggcgcgatc ggatacggca cgtcggcacg
     1021 tggaagctgc atttccggaa cgaacggaat cttctccggc gtcggattgc cgatcgcttc
     1081 cgtgagcagg ccaatcatgt tatggaagta aggcgtggtg cgcagtccgc cgttccacca
     1141 ggtcgaatag ttcgccgcgg agcgcgttac aacccctggc ttgtgttccc ggttgaatcg
     1201 gtcgtgcatc gccgcgccga tcagatccag atcggtgacg atcatcggat cgtagttgta
     1261 gttgaacgga tccctgaacg gtggtgagaa catcacggcg ccggcggggc cggtctggtg
     1321 atggttgtaa acgatctgcg ggaaccactc ccagtacaga acgtgattga tgttcttcgt
     1381 ctcggcctgg ttggacatgt agaagtcacg gttgttgtca tgacccgtgt acttctgcca
     1441 gagccgcggt acatcctcgt tgcgcttcag cgtatccgcg tccttcatgt accagttcga
     1501 tacgagctgc atgccgtcag gattgtcgtg caccgcgagg atgatgcaat cattgaggat
     1561 gcgcctggtc tccggatcgt tgcggctcaa cagatcgtaa accgtctgca tcagctggtg
     1621 cgcaccgagc acctcactcg cgtgcagtcc accatcgatc cagatcaccg ccttcccttc
     1681 cgcggccagt gcgtgcgcct gcgcatcggt caggccttca gcgtgcgcaa ggcgcgcgga
     1741 gatttccttg tatcgatcca gatgcttcat gttctccggc gacgaaatga tcgccatgag
     1801 ctgcgtgcgt ccctcctccg tcttcccgat gtccaccagc ttcatccgat cggattcgcc
     1861 agccagcttg tgccagtacg ccgagaactg gtcgtaattc gcgagccagt agtcatcgcc
     1921 tatattgtgg ccaaattgtt gtttcggggt tgtgatcgac gcatttatcg acgcgtcggc
     1981 cgactgttgc gctctcgcga gcgacggaat gacgatcgcg ccggcaggtg ccagtacgat
     2041 ggtggcgccg agtattgctc gacgcaggga ctgcctggat atcttcatca tcagctagcg
     2101 ggatgggaag gtgacgaggg cgcacgacgt gccctgccga aaatacgcgg gaatacggcc
     2161 ggacgatgaa attcagtaac ggcgcatcca acaggagcaa tcatgagagc tgatcgcgca
     2221 accggaacgt tcgacgtaaa acttaacccc ctggcggcct acagcgccga tgacacgtcc
     2281 atggggcgca tgtccatcga caagcaattt cacggtgatc tccaggcgac cagcaaggga
     2341 gagatgctca gctccatgga ccgcaatagc ggctcgggcg cttacgtcgc catcgagcgc
     2401 gtgaccggct cgctcggcgg tcgcgaaggc agtttcgtct tctatcacgt cggcacgatg
     2461 aaccgcggtg agccgcaact atcggtcagg gtggtacccg attcaggcac cggccaactc
     2521 gccggtctca ctgggaccat gacgatcgac atcgacgccg gaaatcattc ctacggcttc
     2581 gactattccc tgcccgaatc agccgtatag ctgccgcggc agcaatcggc gctcagctgg
     2641 agcggagcaa ctccagctga gcgcgtggtc agcgcgtgtg ccgaaacccc tgacacagca
     2701 ccgcggatgc gccgtcggcc tggcaatgac tgctgggcgc ggacgagtaa gacgacacgc
     2761 gactcgcgta cacgcggcgg tcagccgtgc cccatctggc gcgagttccg cgcacatcta
     2821 tgtgagcgaa cggcccgctc ggtcccatct cacgatacag ccccagacca ccggctagtt
     2881 caggatgcgc ccgctcgacg cgatcgaccg cggcttcaat cacgtgtaca tcgcctgcgt
     2941 ccacgcgacc atcgtgattg agatcatcca tgcgcccatc accgtcagca tccacgatca
     3001 tgtcgacagc gtcaccatac tgatgccggc tttcgcgcgc gcggccgctc gcatcgccaa
     3061 gcgcgaaatt atatgacgga gtgcgaaatc ccgacagaac cttcacgtgc tctgtcgcga
     3121 cgccatgcat ctccaggtcg gaaagaacca gctcgatctt gtcgagcaat tcctcacgca
     3181 acacgatgta tttcggaaac ggcgcaccgt catgtgttac gaagtcgccg agcgtgaagt
     3241 ggtccgaaat cggggtatcc gcattttccg ccgtcacctc gacgaaaccg gccggatttt
     3301 cgtaggcttc cgactgcaca gcgtgcaact ccgccggcca gaatccgatg tgatagtcat
     3361 cgagatattc accacgcttg acagtgaacg gaatcacgcc gatgaacgcg aatggatgtc
     3421 cggcaactcc gcccggaacg gcgtacacac cactcggcgc acttcctgcc gtcaacagat
     3481 ggatgcgcac acgaccactc gagcctgtac tcgtatcgcc gcgctcggtc gctggaacag
     3541 ctgagagtgc ggagggcgtc gagggtgtgg caattggcgg agtcggcgca accctgaccc
     3601 gagccggcct ggtcgagacc gtccctgtcg catgagagcc cgcgctacgc gcaaaagcgg
     3661 gaattgccac tgcgccgagt aggacgcaca acgcagcggc cccgatcgcg tgaacgcggg
     3721 ggatggatga catgccccga gtatcggcag cttgtcgggc cgcgggcgcc ccgggcctcg
     3781 ttcccgcgtt cgcgggaatg acgatcttcc accctagcgt ccctgcgatt tcaggcgtat
     3841 agctctcgag cagagttcgc ccgcctttcg ccctctacga gacgaccatg catcgttccg
     3901 ccccgctagc gaccgccctc ctcctcgcca ccctcgccgt accatcggcc gctcagcagg
     3961 ctccgagcag taaacgggcg tttacgccgg ccgactacta taagatcacc aatctcgcgg
     4021 ctcccgaaat ctcccctgac ggcaagctgg tcgcctttac cgtcaccacc gtcaaggaga
     4081 aggacaacaa gcggcactcc gaagtctgga tcgtgccgac cacgagcggt gcgccgacgc
     4141 gttacacgtc gtccggattc gagagcagca acccgcactt ctcgcccgac ggcaagtacc
     4201 tcttcttcac ctctcgccgt cccgaaggaa agggcgcgcg ctgggctctc cgcatggacg
     4261 ttcccggcgg cgaggcatcc cagatggagg actatcccaa cgcgacctcc gtctcggctg
     4321 atcaccggat tggcgtctgg gccgacacgg tcgatggacc ggcgcgcgac accagcaagc
     4381 gtgccgcagg accctacggc gcgatgggca agctgtcccg cccaccattc gacgcgataa
     4441 ccaaaccgat cgacgccaag cgcttcgacg gaatgcagtt caccgacatg cgattcaaga
     4501 gcaacgatgc cggcttcgtc gccagtcgca gcgagccgcg ccgttactcc gcggcgcaga
     4561 tctggattca gtcgtacgac ggcacaccga aaaagatgtt gacgaacacg acctactccc
     4621 atcgcgacgt cgtcatatcg ccggatggca agtcggtcgc gttcatcgct gatgcggagc
     4681 ttcgtcccga ttccgtagtc gaagcggaac gcgattcact cgcgaagctg ccgtacgatt
     4741 cagcccgtga cgagcgcaca cgcgacgacg ctgatgtatt cgtgatcccg gccgacggca
     4801 gcggcgcgcc gcggcgcgta acacgctttg ccggaatgaa gcgctcgctc cagtggtcgc
     4861 cggactccag atcgatctcg tttaccagcg cgccgtcgcg cgtgaagtcg cagcgcatct
     4921 acgttgcaaa tatcagcgat ggtaatccgc agaacgtgct gggcgaattc aaatacgagc
     4981 cgcaacagta tcagtggact ccaaagggtg acatcgtgat gagcgccgcg gtcggcggtc
     5041 gcgctgcgct cttcaccgtg aatccaaaga cgaaaacagc aaaggagatt ctcggcggcc
     5101 gtcgtgcgtt gcgcggatgg gacatcaacg cgcagcacga tcagatcgcg ttcattgcta
     5161 ccgacatgac gcaccccacc gagctgttca tcgcagatgc gaacggcgca cacgaacgca
     5221 agctcaccgg cttcaacgac aaggtgaact cagagatcgc gttcgcggat ggcgagcgat
     5281 tcacctacaa ctcagtcggt ggcctcgaga tcgaaggctg gctgatgaag ccgtacggat
     5341 atcaggccgg aaaaaagtat ccgctcgttc tctacatcca cggtggcccg cattcgcagt
     5401 acgacgaggg gtggttcgac gaatttcaga atctcgccgg cgccggaatg atggtgttgt
     5461 tcacgaaccc gcgcggatcg tccggctacg gagcagactt cacttattcc acgcgcggcc
     5521 gctggggtgc ggaagactac accgacctca tgaaggcagt cgacatcgca gccgcacgac
     5581 cggacgtcga ttcgacacgc atgggtgtca ccggtggctc ctatggcggc tacatgacag
     5641 cgtggatcga aacgaaaacc gatcgcttca aggccgctca aaccgatcgc atgatcagcg
     5701 actggacata ctggtacggc gcgagcgacg cgcagggcct caccgaattc gagttctacg
     5761 gaaagccgtg ggacaacttc gcgatgtacg actcgctgtc gccgatccgt cacgtgacca
     5821 aagtccgcac gccgacgctg ctggtacaga gtgagaacga cttccgcgca ccgatcggcg
     5881 atgcagagct gtggtacctg gctctcaaga agcagggagt acccgccgag ttcgtccgct
     5941 atccacgctc gacgcacgag ctgtcgcgtt cgggagagcc ctggctgctg gtggacagac
     6001 tcggccgcat ccgccagtgg ttctcgcact ggctggaggc cgcatgaaaa tcctcaccgg
     6061 cattgccgta ctgtcgctcg cactggtcgg cgcgagcgct ccccagtcta gtcatgcgta
     6121 cgtcgacaac ggactggcgc tgacgccacc gatgggatgg aacagttgga accacttcgg
     6181 ctgcaacgtc agcgagtcgc tgatccgaga gaccgctgac tcgatggccg caaacggaat
     6241 gcgcgacgct ggatataaat acgtcgtgat cgacgattgc tggcaggtcg cgcgcgccgc
     6301 tgacggaacc atcattgcgg actcgacgcg cttcccgcat gggatcgccg cacttgcgga
     6361 ttacgttcac agcaagggac tcaagttcgg catctacaca gacgcaggaa cgaagacctg
     6421 tcagggaaga cccggcacct acggtcacga agaacaggat gcgcgcacct atgccgcgtg
     6481 gcacgtcgat tacgtcaagg aagactggtg caacgcaacc ggcctcgacg cgcccacaca
     6541 gtatgcgaaa tttcgtgatg cgcttgccca ttccggccgc aacatcgttt tcagcatctg
     6601 tgagtgggga cacaaccagc cgtggggctg ggctccgcaa accggcaatc tctggcgcac
     6661 gaccgaggac atcgaagaca agtggccgtc gatgctcacc aacctcgaca tctccgcgca
     6721 acattccgca atcgctcgcc cgggcgcctg gaacgatccc gacatgctgg aagttggcaa
     6781 cggcggcatg accgatggcg agtatcgcgc ccacttcagc atgtgggcga taatggcagc
     6841 gccgttgctg gccggcaatg atgtgcgcac gatgtcagcc gcgacaaaag caatcctgct
     6901 caatcccgaa gtcatcgccg tcgatcagga ttcgctcggc gctcagggtg tgatagtgtg
     6961 ggagccaacg ccggagttac aggtgtggtc caagcgtctg catgacggct cgatcgccgt
     7021 tgcgcttctc aatcgctcgg ccgcggccgc aaagatttcg gccaacttct ggcgcgctgg
     7081 cctgcacgtg agctccgcaa c
//
LOCUS       DATIMD010000158         2175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3237131, whole genome shotgun sequence.
ACCESSION   DATIMD010000158 DATIMD010000000
VERSION     DATIMD010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3237131"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..523)
                     /locus_tag="VLI40_03590"
     CDS             complement(<1..523)
                     /locus_tag="VLI40_03590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96284.1"
                     /translation="MLVTELAVRHGASARRNARNTLTCAALLFTALGARSIAAQSSPG
                     PAPKAAPSAWMGLIGEYGDGDRMLISERDGSLYSTVEWLTPYPVRQISTDVFQWPHDG
                     LYGGSRVTFQRGANGRATQLTVGGIVYPRRQIGPESGTQLRITPVRPVEELRTIALAA
                     KPPVEPPSARKPDL"
     gene            complement(545..1747)
                     /locus_tag="VLI40_03595"
     CDS             complement(545..1747)
                     /locus_tag="VLI40_03595"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HSU96285.1"
                     /translation="MSVGPFSFRTAHECGSARIGWFETPHGVVETPAFMPVGTHGVVR
                     GLSMDEVAAAGGQMVLANAYHLYLRPGDVMVRALGGLHAFTRWSGPMLTDSGGFQVFS
                     LSRLRTVSEDGVEFQSHIDGSAHQYTPESVMRIERNLGADIMMQLDELIQGRSDISAA
                     RSAMERSLRWLQRCSVEFDRISREGRAPIPDFTVPAGAPALVCDSQAPQQALFPIVQG
                     GTYPDLRRASVAGILDGGDWSGVAVGGLSVGETKDDTYAILEVCDPVLPKEIPRYLMG
                     VGFPDDLIEGVRRGIDLFDCVAPTKMGRDGTAFTPDGKMQIRQSSYRTDRRPLVEGCG
                     CPCCTQYDRAYLRHLFVSEEMLGKRLLALHNISFLIDLMRSARDALQNGVFGSWSAAW
                     LTRYRTAV"
     gene            complement(1744..>2175)
                     /locus_tag="VLI40_03600"
     CDS             complement(1744..>2175)
                     /locus_tag="VLI40_03600"
                     /inference="COORDINATES: protein motif:HMM:NF024592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4010 domain-containing protein"
                     /protein_id="HSU96286.1"
                     /translation="RAAEAPALNPAIFPLSSPFSITSAIKYGLVFLALQVTGILGQRL
                     LGHAGFYFVSIVGGVASSASAVASAALLAAHGTITPSVAAIGAVLATAMSVLVNVVFA
                     ARVSRDTGLRKHLTVTMTALAVLGIAGVVVQSAFVSLTTRP"
BASE COUNT          438 a          705 c          642 g          390 t
ORIGIN      
        1 ccaggtccgg cttgcgtgcg ctcggcggct cgaccggcgg ctttgcggcc agagcgatgg
       61 tacgaagctc ctccaccgga cgaaccggcg ttatgcgcag ctgagtgccg gattccgggc
      121 cgatctgcct gcgcgggtat actatcccac cgacggtgag ctgtgtagcg cgaccgtttg
      181 caccgcgctg gaacgtcact cgcgagccgc catacagccc gtcatgcggc cactgaaaca
      241 cgtcagtgga aatctggcgt acaggatatg gcgtaagcca ttcgaccgtg gagtagagcg
      301 atccgtcccg ctcggagatc agcattcggt cgccatcacc gtattcgccg atgagcccca
      361 tccaggcaga tggcgcggcc tttggagccg gcccggggct gctctgcgct gcgatggagc
      421 gagcgccgag tgccgtgaaa agcaatgccg cgcatgtaag cgtgttgcgc gcattccggc
      481 gtgcgctcgc gccatgtcgt acagccagct cagtcacaag catgaaacct tcctcggtcc
      541 gatgtcatac ggcagtgcga tagcgcgtca gccacgctgc gctccatgaa ccgaacaccc
      601 cgttctggag tgcgtcgcgt gcgcttcgca tcaggtcaat cagaaatgat atgttgtgca
      661 atgcgagcag cctcttgccg agcatctcct cgctcacaaa aagatgtcgt agatatgcgc
      721 gatcatactg cgtacagcaa ggacacccgc aaccctcgac cagtggccga cgatccgtcc
      781 gatagctgct ctggcgaatc tgcatctttc cgtccggcgt gaatgccgtc ccgtcgcgac
      841 ccattttcgt tggcgcgaca cagtcgaaca gatcgatccc gcggcgcact ccctctatta
      901 ggtcgtccgg gaatccaaca cccatcagat atcgcggaat ttccttgggg agaactggat
      961 cgcaaacttc cagaatcgcg tacgtatcgt ccttcgtctc cccgacggat agcccgccaa
     1021 ccgcgacgcc ggaccagtct ccgccgtcga gaatgccagc gaccgacgct ctgcgaaggt
     1081 ccgggtatgt gccgccctgg acgatcggga acagtgcctg ctgcggcgcc tgactgtcac
     1141 acacgagagc cggcgcgccc gccggcaccg tgaaatccgg aatcggagcg cgtccttcgc
     1201 gcgagatgcg atcgaactcg acgctgcatc tttgcagcca gcggagactg cgctccatgg
     1261 ccgagcgcgc ggcagaaatg tcactccgac cctggatcag ctcgtccagt tgcatcatta
     1321 tgtcggcgcc gagattgcgc tcgattcgca tcacgctttc cggcgtgtac tgatgtgcag
     1381 agccgtcgat gtggctctgg aactcgacgc cgtcctcgct caccgtccga agccgggata
     1441 acgagaatac ctgaaacccg ccggagtccg tgagcatcgg accgctccat cttgtaaaag
     1501 cgtggagacc gccgagtgcg cgcaccatca cgtcgccggg acgaagatag aggtgatacg
     1561 cgtttgccaa caccatctgg ccacccgcgg ctgctacctc gtccatcgat agcccacgca
     1621 caaccccatg cgtgccgacc ggcatgaacg ccggtgtctc gactactccg tgcggcgtct
     1681 cgaaccagcc aatgcgtgca gatccacact catgtgctgt gcgaaacgag aaaggcccca
     1741 cactcacggg cgagtcgtca acgacacgaa ggcgctctga acgacgaccc ctgcaatacc
     1801 gagcaccgcc agcgccgtca tcgtaaccgt tagatgtttc ctgagaccgg tgtctctcga
     1861 cacccgtgca gcgaacacga catttaccag cacactcatc gcggttgcga gaaccgcgcc
     1921 gatcgcggcg actgatggcg tgattgttcc gtgcgcggcg agcagagcgg ccgatgcgac
     1981 agcgcttgcg ctcgatgcga cgccgccaac gatactgaca aaatagaagc cggcatgacc
     2041 gagcaggcgt tgaccgagta tgcctgtgac ctgaagtgcg aggaagacga gaccgtactt
     2101 gatcgccgat gtgatcgaga atggtgagga cagtggaaag atggccgggt tcagcgccgg
     2161 cgcttcggcc gccct
//
LOCUS       DATIMD010000159         4581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2948372, whole genome shotgun sequence.
ACCESSION   DATIMD010000159 DATIMD010000000
VERSION     DATIMD010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4581
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2948372"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..926)
                     /gene="rfbB"
                     /locus_tag="VLI40_03605"
     CDS             complement(<1..926)
                     /gene="rfbB"
                     /locus_tag="VLI40_03605"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000699467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HSU96287.1"
                     /translation="MTILVTGGAGFIGSAVVRQLMRDRSCAVVNADALTYAGNLESLP
                     GVAADPRYRFAQVDVRDGASVRDLFARHSPTAVMHLAAESHVDRSIDAPAAFVQTNVV
                     GTLVMLQEAQRYWESLDADARGRFRFLHVSTDEVFGSLGPAGLFNEETPYRPNSPYSA
                     SKAGADHLVRAWYHTFGLPTLTSNCSNNYGPFHFPEKLIPLTILNALEGKRLPVYGRG
                     ENIRDWLFVEDHVDALLTILDRGAPGQVYCVGGRNERRNVDVVRAICGLLDELAPDEA
                     IGPRERLIEFVVDRPAHDSRYAIDAGKIERELG"
     gene            complement(1030..2628)
                     /locus_tag="VLI40_03610"
     CDS             complement(1030..2628)
                     /locus_tag="VLI40_03610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96288.1"
                     /translation="MTETIAQRGPRTANSRHLAPRTEMTLDWHQATRALMVILIISWC
                     ARLALAAKGGQYFFPDEQRFNRSLELVGIIASGDVSRAISYLVARADHTGWILVGLAP
                     ALPIALLSHITGRSPEQFAYLAAMFLSLASVACIALTFGVARRLGASPVESLAAAALV
                     AFAASFFYWSRHLIPYDVSMAFALASLWVGLATGGTGRSFAAGLLAGICFAVYNGYWT
                     LAVVACAVQCLVGVRTLKRLATRATIRALGLALPTVALVIAARLAGQDDSFAKMREFA
                     ASVKQGDWAEGFTLPLEYLWRADRLLALGWMLAIVVTFAWLVRATPPENGIRLRLQAI
                     YRRRLGSDPMPRALLLLACVAAVYACLAGGASIARVFVVYGRLARQLVPFLCLLTACV
                     GTSAYERHRDHRRTIISVAAVAAALQLILAFAPPFRQMFPRELEASIFEYRPLDYALT
                     VQGPPPRTGNPGARFVLVNADYLYPPRGHLPLPAGTTVLSFPHPLQYVPYQFEGFRAY
                     ERRILAESDISLRLIDRGAAAPSR"
     gene            2671..4242
                     /locus_tag="VLI40_03615"
     CDS             2671..4242
                     /locus_tag="VLI40_03615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96289.1"
                     /translation="MLIRDAVTRYRSIAGVLRICFWLAVLLFIGAGARLAAANHSEGG
                     WDSASNLIAARSVATGDGFTTIQVQDLVDPHPIPGRETVRAPGVVYLFAGVLRITHTW
                     MKAMVWFNLVTILIAVFCLRGAVGLVAPAWSADVAGLLLLANAANYQLVPLVNNNALT
                     AVTCIALLIVALARRRRLQGMRLAVACGAVGAAAFLVKQSYILGFAAFATILLASEVR
                     YSWTRRALHIVLAGTLMALFSIPYWLPNLREHGTPLYSPIQELRLPFRYGVIPTETYQ
                     RVVYLGKTVPGYHAIAQMIGTRSMLRRELDIVRMVPGALFGRGALVLVWAIAMLVFMR
                     RRRWVLVLAALALAIPPFFDAIWWVPEARYFFPVYPIAIFIGALAVTDYRWVERREFR
                     PAARVRFRRAFTLLCALVAIGTLLQTRWGWRSEFAMARTPEPAWIPAVDGLPADAVVL
                     TTVPPQVSWWTSRPTVVEPEGTRADLVEVLRLYRPGFYLDLSPGARSNRPPFAPNELE
                     PIGSGAGWALYRLHG"
     gene            4252..>4581
                     /locus_tag="VLI40_03620"
     CDS             4252..>4581
                     /locus_tag="VLI40_03620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96290.1"
                     /translation="MPTAQVDRETARAPLPSVIVICGKGRIATGALSFAVHHVATSGL
                     ACRVAACPNSDDKGYDTWQQSLAKAAALLGVPTVRTIDIEDEPDLLLISLEYDRIIPV
                     TRFRSGRL"
BASE COUNT          859 a         1411 c         1484 g          827 t
ORIGIN      
        1 ccgagctcgc gttcgatctt ccccgcatcg attgcatagc ggctgtcgtg agcgggccga
       61 tcaacgacaa attcaatcaa gcgttctctc ggcccgatcg cttcatcagg cgccagctcg
      121 tcgagcaatc cgcagattgc ccggaccaca tcgacattcc gccgctcatt gcggccgccg
      181 acacagtaca cctgacccgg cgcgccgcgg tcgaggatcg tcaacaaggc atcgacatga
      241 tcctcgacga agagccaatc gcgaatattc tcgccacggc cgtacacggg cagtcgcttc
      301 ccttcgagtg cgttgaggat cgtgagaggg atcagcttct cgggaaaatg aaagggcccg
      361 tagttgttcg agcagttgga tgtcaacgtg ggcaagccga acgtgtgata ccacgcgcga
      421 acgagatggt ccgcgccggc cttgctggcg gagtacgggg agttcggccg atacggtgtt
      481 tcctcgttga acagcccggc gggtccgagt gaaccgaata cctcatctgt cgagacgtgc
      541 aggaaacgaa agcgcccgcg cgcgtcggca tcgagggact cccagtaccg ttgcgcttcc
      601 tgcagcatga cgagggtgcc caccacattc gtctgcacga atgccgccgg tgcatcgatg
      661 gagcgatcga catgcgactc ggccgcgaga tgcatcaccg ccgtgggcga gtgccgcgcg
      721 aaaagatcgc ggacgctcgc gccatcgcgc acatcgactt gggcgaaacg gtatcgtgga
      781 tccgccgcga ctcccggtag tgattccaga tttcccgcat acgtcaaggc atccgcgttc
      841 acgacggcgc agcttcgatc gcgcatcagc tggcggacca cggcggagcc gatgaagccg
      901 gcgccccccg tgacaagtat ggtcacgatc ccctgttttg acgtatggtg ttgccgcact
      961 caggaggaat acgaacgcat gtaacgcatg tgcggagtcc gggcacgggt gcaagcatgg
     1021 tgccagcctc taccttgacg gcgccgccgc gccgcggtcg atgagtcgca acgaaatgtc
     1081 tgattcagcg aggatccgcc gctcataggc gcgaaagccc tcgaactggt aaggcacata
     1141 ctgaagtggg tgtggaaacg acaataccgt ggtgccagct gggaggggca gatgcccgcg
     1201 tggcggatac aggtagtcgg cgttcacgag gacaaatcgt gcaccggggt taccggtacg
     1261 tggtggaggc ccctgaactg tcagtgcgta gtcaagcggg cgatactcaa agatgctcgc
     1321 ttcgagctca cgtggaaaca tttgcctgaa cggcggtgcg aaggccagga tcagctgaag
     1381 ggccgctgcg accgcggcga cactgatgat cgtacggcgg tgatcgcgat ggcgttcgta
     1441 ggcgctggtt ccgacgcacg cggtcaacag acaaaggaac ggaaccagct ggcgcgcgag
     1501 gcggccgtaa acaacgaaca ctcgcgcgat gctcgcaccg ccggccaggc acgcgtacac
     1561 cgcggcaaca cacgccagca aaagcagggc gcgcggcatc gggtcggatc ccaagcgtcg
     1621 gcggtaaatc gcctgaaggc gcagacggat tccgttctcg ggaggcgtgg cgcggacgag
     1681 ccacgcgaag gtcacgacga tcgcgagcat ccatcccaac gccagtagcc ggtcggcgcg
     1741 ccacaaatac tccagcggca gtgtgaatcc ctcagcccag tccccctgct tcacactcgc
     1801 ggcaaattcg cgcattttcg cgaagctgtc atcctgcccc gccaaccggg ctgcgatgac
     1861 cagtgcgact gtcggcagtg caaggccaag cgcccgaatc gtcgcgcggg tggcgagccg
     1921 tttgagcgtt ctcactccga caaggcattg aaccgcgcac gcgacgaccg cgagcgtcca
     1981 gtacccgtta tagactgcaa agcaaatccc cgcgaggagc cctgcagcga atgagcggcc
     2041 ggttccaccc gtcgcgaggc ctacccagag tgaggcgagc gcgaacgcca tcgagacgtc
     2101 gtacggtata agatgccgcg accaatagaa gaagcttgct gcgaaggcaa caagcgccgc
     2161 ggcggccagt gactccaccg gggaggcgcc gaggcgccgc gcgacgccga acgtgagcgc
     2221 gatgcacgca accgacgcaa gcgacaggaa catcgccgcg agatacgcga actgctctgg
     2281 cgaacgccct gtgatgtggc tcaggagggc gattggaagc gccggcgcga gaccaacaag
     2341 gatccatccc gtgtgatcgg cgcgggcgac gagatagctt atcgcacgac tcacgtcacc
     2401 gctggcgatg atgccgacaa gttcgagcga acggttgaag cgctgttcat cagggaagaa
     2461 atactgcccc cccttcgccg cgagtgcgag tcgcgcgcac caggagatga tgaggatgac
     2521 catcagagcg cgcgtcgcct gatgccagtc gagggtcatc tcggtacgcg gggcgaggtg
     2581 ccgcgaattt gccgtgcgag ggccgcgttg tgcgatcgtc tcagtcatcg tgtcgtgata
     2641 gcggaacgaa tattgtagag gccgcgcaca atgctcatcc gtgatgctgt cactcgatat
     2701 cgctcgatag ccggagtgtt gcgcatttgt ttctggttgg cggtcctgct cttcatcggc
     2761 gcgggcgcac gtctcgccgc cgcgaaccat agcgaaggtg gctgggattc cgccagcaac
     2821 ttgatcgcgg cgcgaagcgt ggcgactgga gatgggttca cgacgatcca ggtgcaggat
     2881 ctggtcgacc cgcatccgat cccggggcgg gaaacggtgc gcgcgcccgg agtggtgtac
     2941 ctgtttgccg gcgttctccg gatcacccac acgtggatga aggcgatggt gtggttcaat
     3001 ctcgtcacca tcctcatcgc cgtcttctgc ttgcgcggag ccgtcggatt ggtcgcgcca
     3061 gcgtggtccg cggatgtcgc cggactcttg ctgctcgcga acgcggcaaa ctatcagctc
     3121 gtgccgctcg tcaacaacaa tgcgctgacc gcggtgactt gcatcgcgct gcttatcgtg
     3181 gctctggcac ggcggcgccg acttcaaggg atgcgcctcg cggtcgcgtg cggggcggtc
     3241 ggcgcagccg catttctcgt caagcaaagc tacatcctcg gcttcgccgc cttcgcgacc
     3301 attcttctgg cgtcggaagt gcgctacagc tggacgcgac gcgcgctgca tatcgtgctg
     3361 gccggaacgt tgatggcgct cttctcgata ccctattggc tgccgaacct ccgggagcac
     3421 ggcacgccgc tgtactcacc gatccaggag ctcagattac catttcggta cggcgttatc
     3481 ccaacggaga cgtaccagcg cgtcgtctac ctgggcaaga ctgtcccggg ataccacgcg
     3541 attgcgcaga tgattgggac tcgctcgatg ttgcgtcgcg aacttgatat cgtgcgcatg
     3601 gtgccgggcg ccctgttcgg tcggggtgcg ctcgtgctgg tctgggcgat cgcgatgctc
     3661 gtgttcatgc gccgtcgacg atgggtcctc gtgctcgcgg cgctcgcact cgctattccg
     3721 cccttcttcg acgcaatctg gtgggtcccc gaggcgcgct acttcttccc ggtatatccg
     3781 atcgcgattt ttatcggtgc gctggcggtg accgactatc ggtgggtcga gcgtcgggag
     3841 tttcgtccag cggcacgtgt ccggtttcgc agagcattca cgctgctgtg cgcattggtc
     3901 gccatcggca ccttgctcca gacgcgatgg gggtggcgat cagaattcgc gatggcgagg
     3961 acccctgaac cggcatggat ccctgcagtc gatgggctac ccgcggatgc cgtcgtgctg
     4021 acaacggtgc cgccgcaggt gagctggtgg acgtcgcgac cgaccgtggt ggagcccgag
     4081 ggtacacgcg ccgacctggt cgaggtgctt cggctctatc gacccggctt ctatctcgat
     4141 ctttcacctg gcgcccggtc caatcgccca ccatttgcac cgaacgagct cgaaccgatc
     4201 ggctccggag ccggatgggc gctctatcgg ttgcatggtt agcccagcgt aatgcctacc
     4261 gctcaagtgg acagggaaac agcgcgggca ccgttgccct cggtgatcgt gatctgcgga
     4321 aaggggcgaa tcgcgacagg ggcactttca tttgccgtgc accatgtggc gacgagcgga
     4381 ttggcctgtc gggtggccgc gtgcccgaac agtgacgaca agggctacga cacgtggcaa
     4441 cagtcgctcg cgaaggcagc agcgttgctc ggcgtcccga ccgtgcggac gatcgacatc
     4501 gaggacgagc cggatctgct cctgatctcc ctcgaatacg atcggatcat tccggtcact
     4561 cgtttccgat cggggagatt g
//
LOCUS       DATIMD010000160         6363 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2369526, whole genome shotgun sequence.
ACCESSION   DATIMD010000160 DATIMD010000000
VERSION     DATIMD010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6363
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2369526"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..276
                     /locus_tag="VLI40_03625"
     CDS             <1..276
                     /locus_tag="VLI40_03625"
                     /inference="COORDINATES: protein motif:HMM:NF016165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin receptor-like dimerization
                     domain-containing protein"
                     /protein_id="HSU96291.1"
                     /translation="TSSDFAALNVQLIKSERMLTSDAGLPGRPWFKHLLYAPGVNTGY
                     GVKTIPGVREAIEAKDWSLATSEIARVSAALNAEAALVTKATGELGR"
     gene            complement(333..857)
                     /locus_tag="VLI40_03630"
     CDS             complement(333..857)
                     /locus_tag="VLI40_03630"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HSU96292.1"
                     /translation="MTTPFIDVATVSLGLLIVRITLGLLMAAHGSQKLFGWFGGHGLA
                     GTAGFFDSLGFRPGRFFATLASATEVTSGLLVALGFLGPVGPALMISVMIVAAVSMHW
                     KNGLFAANGGIEVPLLYGVAAAGLLLTGPGQYSLDAALGLGILATPMLAWAALAVGVI
                     GGIMNLFARRPVAA"
     gene            complement(973..1440)
                     /locus_tag="VLI40_03635"
     CDS             complement(973..1440)
                     /locus_tag="VLI40_03635"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSU96293.1"
                     /translation="MTRTLQEEIRQTKPFPSKTAEALLSILRTATVLEHEQNEALRPH
                     GLTHTQYNVLRILQGAGKDGLCGREIADRLISKVPDVSRLLDRMDDMELVSRVRDAAD
                     RRHVTARITQKGRRLLIQATPDLEVMERKRCKHLDPRAVASLVSTLAEIREPA"
     gene            1662..4037
                     /locus_tag="VLI40_03640"
     CDS             1662..4037
                     /locus_tag="VLI40_03640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HSU96294.1"
                     /translation="MHTRSTHFQTSLGTSFGTSLRIALAGAVIGVAPALHAQQPQQRV
                     LTTADYDRAVKMLAPNLNKLVSGGSVRATWLPDDRFYYQNTTPTGAEWVMVDPAKKTS
                     TPLFKAPEVAQALTHAGAGTIDPRNIPAQRAELSADGKHVVLDIGRQRWSCDVGGGTC
                     NAVNDTTPRPGPFGPPPGMSPDGKSVAFIRDWNLWVRNVATGQEKQLTTDGKENFGYA
                     TDNAGWVHSDRPIVLWSPDSKKIATQQQDDRPVGDMYLIDTRVGHSHLDHWKGAYPGD
                     SVISMISRVVIDVDNAKVIRLQDAPAYHRAMLGDNINMADLIWSPDGSQLAYVNTSRD
                     HKHETVKLADANTGAVHTLFEESSPTQFESIAGWRIIWPAHQIIWSSERDNWAQLYLY
                     DLNTGKLINKITTGDGPVTQIAHVDEKGRSLIVGALGRNPSEDPYFKHYYRIGLDGKG
                     WKELTPESGDHTIQVSSDGRYFVDTYSKPDVPPTVVLRDAAGRVVMQLGHMDISKLVA
                     SGWKPPIPFTVTAHDGKTKLYGLMFRPTNFDSTKKYPIINNPYPGPQSGSVGSRSFSP
                     ARSDRQALAELGFVVITVDGMGTPDRSKSFHDAYYGAMGRDNTLPDQVATMKELASRY
                     SWIDIDRAGIYGHSGGGFATADAMFRYPDFFKVGISESGNHDQRNYEDDWGERYQGLL
                     VKNADGTDNYTAESNESVAKNLKGHLLLAHGSMDDNAPPSNTMLVVDALIKANKDFDE
                     IIIPNAHHGYGAASDYMMRRRWDYFVRYLLGAEPPKEYEIVTPAAGAARRR"
     gene            4400..5272
                     /locus_tag="VLI40_03645"
     CDS             4400..5272
                     /locus_tag="VLI40_03645"
                     /inference="COORDINATES: protein motif:HMM:NF028007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HSU96295.1"
                     /translation="MDIALVIVVLLLFVVGPVVVVNRDLLFNRSAIKRKQYSEPPLPF
                     LIIPTSPGEPAIDPVGTLPRRAAAPRASARQSVAEAEAEADDEEPTQTNAAVADVLSE
                     QLFEQPPESYDDYDEFDDETLMEPPEPRAQRAPEPRRAEPIRVAPLADVRGGIEEADD
                     MDEPAPDATVVFHRPMDEAVQILPGRLHVLSGEAAGKDFRLVSRIGEPPHIVVGRETG
                     PPYRHITLEAPTVSRRHARMDFVDGHWTITNLSKTNPVLVNNRALLNGGTARKLANGD
                     CIELGEVALRFLAS"
     gene            5292..>6363
                     /locus_tag="VLI40_03650"
     CDS             5292..>6363
                     /locus_tag="VLI40_03650"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSU96296.1"
                     /translation="MMLPDSLAQTPLNPPPELAGGAPFSDSYELIREIGRGGMAIVYL
                     MRERETGIERAVKVIHTKHLDDEEALARFDREARLVAQLQHPNIVATHSVRWIESVGF
                     GLVMDHVPGRTLKEMLRDGPRIGFDQATCILSDIAAALSFAHERGIVHRDVKPENIFI
                     DDISGRALLADFGIARSVSNDTQQLTLAGVAIGTPTYMAPEQIDGSIVDARSDLYSLG
                     LVGWEILTGRRPWDGETLYNVIYHQKHGQLAAIDALRPETPPRLVAAIERLLEKSPAD
                     RWQSAEQFRNALTSDAPIERKREFAAPAPDETIAMTISPARQVRSRIRRVAPFAAIGA
                     ALVSATLLFAWPVSDWVPLISGG"
BASE COUNT         1294 a         2035 c         1937 g         1097 t
ORIGIN      
        1 acatccagcg atttcgctgc gctcaacgtg cagctgataa agagcgagcg catgctgaca
       61 tccgacgccg gtctgcccgg ccgcccatgg ttcaagcatc tgctctacgc gcccggagtg
      121 aacacaggct acggagttaa aaccatccca ggcgtgcgcg aagcaatcga ggcaaaggac
      181 tggtcgctcg caacgagcga gatcgcgcgc gtgtcagcgg cgttgaatgc ggaggcagcg
      241 ctggtgacga aagcgacggg ggaattggga agataggtgg gatcactagc acgtcatccc
      301 cgcgaaagcg gggatgacgg gcttgcggcg ccctacgccg ccaccggccg gcgcgcgaac
      361 agattcatga ttccaccgat cacaccgacc gcgagcgcgg cccatgccag catcggcgtc
      421 gcgagaatcc caagccccag cgccgcatcg agcgagtact gacccggccc cgtcagcaac
      481 agaccggccg cggcaactcc ataaagcaat ggcacctcga tgccgccatt cgccgcgaac
      541 agaccgttct tccagtgcat gctcaccgcg gcgacgatca tcaccgagat catgagcgcc
      601 ggaccgaccg gtccgagaaa tccgagcgcg accaggaggc cgcttgtgac ttccgtagct
      661 gatgcaagcg tggcgaagaa ccggcccgga cgaaagccga gggaatcgaa gaaccccgcc
      721 gttcccgcaa gtccgtgtcc gccgaaccag ccgaacagtt tctgactgcc gtgagctgcc
      781 atcagcagcc cgagcgtgat acgtacgatc aacagcccga ggctgacagt cgcgacatcg
      841 atgaatggtg ttgtcatttg agtagttggt gaggggtttg tgaagcgttt gtggagcgtg
      901 tgtgaagcgt tatggatctg aaaatgcgtg gtatgacagt agctgttata acatgtatta
      961 ttgcaaaaaa aatcaggccg gctctcgtat ctccgcgagc gtgctgacca gcgacgcgac
     1021 cgcgcgcgga tccagatgct tgcatcgctt gcgctccatc acctcgagat cgggagtcgc
     1081 ctggatgagc agacggcggc ccttctgcgt gatgcgtgcc gtgacatgcc gccggtcggc
     1141 cgcgtcgcgc acccggctca cgagctccat gtcgtccatc ctgtcgagca gccgcgaaac
     1201 gtcagggacc tttgaaatga gccggtcggc gatctcccgc ccacacagac catccttgcc
     1261 cgcaccctga agaattcgaa gcacgttgta ctgcgtatga gtcagcccat gcggtcgcag
     1321 ggcttcgttc tgctcgtgct ccagcacggt cgccgtccgt agtatggaca gcagagcctc
     1381 ggccgtcttc gatggaaacg gtttcgtctg tcggatctcc tcctgcagcg ttcgggtcat
     1441 ggggggataa tacatgttat aacatgcatt gtcaataccg acccggccgg ccggttcgcg
     1501 gctcaggccg gtctgtcgga tactgtacag atggacagca ctggcagacc caccgcgatc
     1561 cctgtatatc ctccgcagcc ttacaacccg cgtacgcagc agcccgtact caatgtgttg
     1621 ccttcactgc atcaggctga cttccatcta cccgtacgag aatgcacacc agaagcaccc
     1681 acttccaaac gtccctcgga acgtccttcg gaacgtccct ccgcatcgct ctcgcaggcg
     1741 ccgtcatcgg cgtcgcgccg gcacttcacg cgcagcagcc gcagcagcgc gtactcacca
     1801 cggccgacta cgaccgcgcc gtgaagatgc ttgcgccgaa cctcaacaag ctcgtaagcg
     1861 gcggctccgt tcgagccacc tggctgccgg acgaccggtt ctactaccag aacaccactc
     1921 cgacaggcgc cgaatgggtg atggtcgacc cggcgaagaa gaccagcact ccgctcttca
     1981 aggcacccga agtcgcgcag gcgctgacgc acgcgggcgc gggcacgatc gacccgcgca
     2041 acattccggc gcaacgcgcc gagctgtccg cggacggaaa gcatgtcgtg ctcgacattg
     2101 gacggcagcg ctggagctgt gatgtcggcg gcggcacctg caacgctgtg aacgatacca
     2161 cgccgcgccc gggtccattc ggaccgccgc ccgggatgtc gccggacggg aagagcgtcg
     2221 cgttcattcg cgactggaac ctgtgggttc gcaatgtcgc tacgggtcag gagaagcagc
     2281 tgaccaccga tggcaaggaa aatttcggct acgcaaccga caacgccggc tgggtgcaca
     2341 gcgaccgccc gatcgtgctg tggtctcctg attcgaagaa gatcgcaacg caacagcagg
     2401 atgatcgccc ggtcggcgac atgtatctca tcgacacgcg cgtcggtcac tcgcacctcg
     2461 accactggaa gggtgcgtat cccggcgaca gtgtgatatc gatgatctcg cgcgtcgtga
     2521 tcgacgtcga caatgcgaaa gtgatccgcc tgcaggatgc gcccgcctac caccgcgcga
     2581 tgctgggcga caacatcaac atggccgatc tcatctggag tccggacgga tcgcagctcg
     2641 cgtacgtgaa cacgtcgcgc gatcacaagc atgaaacggt caagctcgcc gacgcaaaca
     2701 ccggcgccgt tcacacgctg ttcgaggaga gttcgccgac ccagttcgag tcgatcgccg
     2761 gatggcgcat catctggccg gcgcatcaga tcatctggtc gtccgagcgc gacaactggg
     2821 cccagttgta tctgtatgat ctcaacaccg gcaagctcat caacaagatc acgaccggcg
     2881 acggccccgt gacgcagatc gcgcacgtcg acgagaaggg tcgctcgctc atcgttggtg
     2941 cgctgggtcg caatccatcg gaagatccgt acttcaagca ctactatcgc atcggcctcg
     3001 acggcaaggg atggaaggag ctcacgcccg agagcggcga ccacacgatc caggtgtcgt
     3061 ccgacggacg ctatttcgtc gacacgtact ccaagcccga cgttccgcca accgtcgtgc
     3121 tgcgcgacgc agcgggtcgc gtcgtgatgc agctcggaca catggacatc tcgaagctcg
     3181 tcgcgagcgg atggaagccg ccgattccat tcaccgttac ggcgcacgac ggcaagacga
     3241 agctgtacgg actgatgttc cgcccgacca acttcgattc cacgaagaaa tatccgatca
     3301 tcaacaatcc gtatcccggc ccgcagtcag gcagcgtggg ctcgcgcagc ttctcgcccg
     3361 cgcgcagcga ccgtcaggcg ctcgccgagc ttggcttcgt cgtgataacg gtcgatggaa
     3421 tgggaacgcc ggacagatcc aagagcttcc acgacgctta ctatggcgcg atgggacgcg
     3481 acaacacgct tcccgatcag gtcgcgacga tgaaggagct tgcgtcgcgc tactcgtgga
     3541 tcgacatcga tcgcgcggga atctacggtc actcgggcgg cggcttcgcc accgccgacg
     3601 cgatgttccg ctatccggat ttcttcaagg ttggtatctc ggagtcgggc aatcacgatc
     3661 agcgcaacta cgaggacgac tggggcgagc gttatcaggg actgctggtg aagaatgccg
     3721 acggcaccga caactacacg gcggaatcga acgagagcgt cgcgaagaat ctgaagggac
     3781 atcttctcct cgcacacgga tcgatggacg acaacgctcc accgtccaac acgatgctcg
     3841 tcgtcgatgc gctgatcaag gcgaacaagg acttcgacga gataatcatt ccgaacgcgc
     3901 accatggcta cggcgcggca tctgattaca tgatgcgtcg ccgctgggat tacttcgtac
     3961 gctatctgct cggggccgag ccgcccaagg agtatgagat agtgacaccg gctgccggag
     4021 cggcgcgcag aaggtaggtc agcgaaagtg aagtagcgaa agtaaaaaaa gggggcagag
     4081 tggtgttttc cgagaaccag aaaacaccac tctgccccct ttttttctga cccccttttt
     4141 ttccacattc actcctgacg gtctgccgga ccggccctta ttttccagta caggcaacat
     4201 cggcccggct tgtgctgtat atggcaatat cgggccgccc gcgtgaggtc atcgccgcgg
     4261 agaggctggc gtaccttgcg acgaggtagc gatccacggt tgggcgcccg aatcgggttc
     4321 actggttcac tggatcgcgg gtggcgctgg ctggcatgca gccggcaaag tccgggctct
     4381 gatttccacg actggtcaga tggacatcgc actggtaatc gtagtactac ttctcttcgt
     4441 tgtcgggccg gtggtcgtcg tgaatcgcga ccttcttttc aaccggtctg ccatcaagcg
     4501 aaaacagtac tcggagccgc cgcttccgtt tctcataatc ccgacctcgc cgggcgagcc
     4561 cgccatcgac cccgtcggca ccctgccccg tcgagccgct gccccccgcg cctcggctcg
     4621 tcagtcggtc gcggaagccg aggccgaggc cgatgatgaa gaacccacgc aaacaaacgc
     4681 cgcggtcgcc gacgtcctgt ccgaacagtt gttcgaacag ccgcccgaga gctacgatga
     4741 ttatgacgag ttcgacgatg agacactcat ggaaccgcca gagccgcgcg ctcagcgggc
     4801 gcccgagccg aggcgcgcgg agccgattcg cgtcgctccg ctggcggatg taaggggcgg
     4861 gatcgaggaa gccgatgaca tggacgagcc ggcacccgat gcgacggtcg tctttcaccg
     4921 gccgatggac gaagcagtcc agatcctgcc cgggcggctc catgtcctct cgggcgaggc
     4981 agctggcaag gacttccgtc tggtgagcag gatcggggag ccaccccaca tagtcgttgg
     5041 gcgcgagacg ggaccgccgt accgccacat caccctggaa gctccaaccg tcagccgccg
     5101 tcacgcgcgc atggacttcg tcgatggtca ctggaccata acgaatctct ccaagaccaa
     5161 cccggtgctc gtgaacaatc gagccctgct caatggcggt accgcgcgga agctcgccaa
     5221 cggcgactgc atcgagctgg gtgaagtggc gctccgcttc ctcgcgagct agccgtcacg
     5281 cactgatgga catgatgttg ccagacagtc tagcgcagac gccgctcaat ccgccgccgg
     5341 agctggctgg tggcgcaccg ttcagcgatt cgtacgagct gattcgcgag atcggtcgcg
     5401 gcggcatggc gatcgtctac ctgatgcgcg agcgtgaaac ggggatcgag cgcgccgtca
     5461 aggtgattca cacgaaacac ctcgacgacg aggaagcgct cgcccgcttc gatcgcgaag
     5521 cgcgtctcgt cgcacaactg cagcatccca acatcgtcgc gacgcactcg gtgcgctgga
     5581 tcgaatcggt gggattcgga ctggtgatgg atcacgtccc gggccgaaca ctcaaggaga
     5641 tgttgcgtga cgggccgagg atcggattcg atcaggcaac gtgcattctc agcgatatcg
     5701 ccgccgcact gagcttcgcg cacgagcgcg gcatcgtgca ccgcgacgtc aagcccgaga
     5761 acatcttcat cgacgacata tcgggccggg cgctgctcgc cgatttcggt attgcgcgct
     5821 cggtgagcaa cgacacgcag caactgacac tcgccggtgt cgcgatcgga actccgacct
     5881 acatggcgcc cgaacagatc gacggttcca tcgtcgacgc gcggagcgat ctctacagcc
     5941 tcggcctcgt cggctgggag atcctgactg gccggaggcc gtgggacggc gagactctgt
     6001 acaacgtcat atatcaccag aagcacggtc agcttgcggc gatcgacgca ctgcggcccg
     6061 agactccgcc gcggctcgtc gccgcgatcg agcggctgct ggaaaagtct ccagctgaca
     6121 ggtggcagtc cgcggagcag ttcaggaacg cactgacgtc ggatgcgccg atcgagcgga
     6181 agcgcgaatt tgccgcgccc gctcccgacg aaaccatcgc gatgacgatc tcgccggcgc
     6241 gccaggttcg cagcagaatc cgccgcgtcg caccgttcgc cgccatcggc gcggcactcg
     6301 tcagcgcgac gttgctgttc gcgtggccgg tatccgactg ggtgccgctc atcagcggtg
     6361 gca
//
LOCUS       DATIMD010000161         6606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_927504, whole genome shotgun sequence.
ACCESSION   DATIMD010000161 DATIMD010000000
VERSION     DATIMD010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6606
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_927504"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..2753)
                     /locus_tag="VLI40_03655"
     CDS             complement(147..2753)
                     /locus_tag="VLI40_03655"
                     /inference="COORDINATES: protein motif:HMM:NF039587.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5916 domain-containing protein"
                     /protein_id="HSU96297.1"
                     /translation="MSFPTPSSSSASRLIVGAVTTILAVAAPALAHAQASQTQASQPV
                     VSSDYMTSVVAVHADHPPVLDGRDDDAVWRNAPAVTHFREFDPVEDGDPRFRTEFKVA
                     YDSHNIYVFIRAFDPEPAQIRKTLARRDVRPPTDQLKVMIDSYHDGRSGFEFAVSPGG
                     VKRDYAMYDDTNEDQTWDGVWDVATSIDSLGWTAEFAIPMSQLGFNNATVHTIGFGIW
                     RDIDRFKERVSWPVFRPSRNATVSQLGTVTGIGDVGSTHPLEVVPYVVTKNVSTVGAS
                     SYGRAQRVSAGADLKLGVTPSLRLTAAVNPDFGQVEADPSVLNLGAFETFFSEQRPFF
                     VEGQGRYAFSINCNVVNCQSEGLFYSRRIGRTPQLIDNYGDASSPTATTILGAAKLSG
                     RIGKSLSVGVLDAVTERATGTLDRTIEPTTNYGVARVQREFRDGKSYIGAVLTSVDRN
                     TDSWTADALRQTATVGGVDFAHRFLNDNYKISGSLTGSEVTGTAAAITQTQMSAVHYY
                     QRPDGKLRVDSSLTSLTGNAEELLVGKYGGLATFETSFQRQSAGYEINDIGYLRRADE
                     QSWSNWGALNFRKPTRFYNSVRINGNFWNTWTTDGLALEHAVNSNVHFVFHNNWGFNA
                     GSTLGQLGSTYCDRCARGGPAVRQSSYISPWMGIQGDDRHRLTPAVYLNYFRTDEGRS
                     HNLSVEPTLDVRASSQLLLSLDVTASHNENNTQWIGNFHDTATSTMHYAFAHLHQNTL
                     VTAIRATYIATPALSFQFYAQPFVSNGTYSDPRELSADPRAARYSDRYVGYTPPASAI
                     SGFSDREFKSNTVVRWEYRPGSTLFLVWTQGRQRYDNAPDTRGWTQTYPDLLQIRPDN
                     TFLVKFSYWLNR"
     gene            complement(2893..3603)
                     /locus_tag="VLI40_03660"
     CDS             complement(2893..3603)
                     /locus_tag="VLI40_03660"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HSU96298.1"
                     /translation="MAGRHGWYHDYGARTMDQDTWTAVDGYLAEKLIPPDPALDAALA
                     AMEAANMPAISVSPTQGKLLALLAATLRAKSILEIGTLGGYSTIWLARGLAAGGKIVT
                     LEKEPRHADVARANIARAGFADVVELRVGSALDTLPKLSGEDREPFDLVFIDADKQNI
                     PAYFDWAVTLAHAGSMIIVDNVVRDGDVINSDTEDAGTQGVRRFFDKLSASPLVTSTA
                     VQTVGVKGYDGFTVSIVN"
     gene            3757..4476
                     /locus_tag="VLI40_03665"
     CDS             3757..4476
                     /locus_tag="VLI40_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU96299.1"
                     /translation="MTSWELEPAIRLEQVGKTYLTDDVETRALSNVSFEIARGEYVAI
                     SGPSGCGKTTLLSILGLLDAATTGRYFLGGHDVAKLSGGQRARVRNSQIGFIFQAFNL
                     LGDLTVWENVALPLSYRGLEPRDRRKCALDALERMGMAHRLDHYPSQLSGGQQQRVAV
                     ARAVAGEPLIILADEPTGNLDSENGDQVMELLAELHRTGSTICMVTHDPRHARHAERT
                     INLLDGNVVAIESRDSMLQPA"
     gene            4493..4831
                     /locus_tag="VLI40_03670"
     CDS             4493..4831
                     /locus_tag="VLI40_03670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HSU96300.1"
                     /translation="MSKQTDRADVLPGTLDMLILKTLTITPMHGYGIAQHILQVSREA
                     IQVEEGSLYPSLQRMQVKGWVTSEWGQSPTGRRARYYRLTAAGKKQLGTEVSDFRKAV
                     EAIQRVIQTV"
     gene            4844..>6606
                     /locus_tag="VLI40_03675"
     CDS             4844..>6606
                     /locus_tag="VLI40_03675"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU96301.1"
                     /translation="MAMWSWIAATSRRLSFRAHRASLDEELRDEMQFHIDMLARDNEA
                     RGMTPEAAREAARRQFGSSTMLREASRMHWSLGWIDALWQDVRYGIRSLIRTAGVTVT
                     ALLTLTLGIGATVMVVALVDATLLHPIALRDVDRIVTICQTNAGPSCQQLATGNYVSI
                     RSAPTALKDAALMQYWSATVSGRDGATVATGAVVTPNYFAVLGVTPFLGRSFTRADAD
                     ASASQPAVVILSYGFWRGNFNADPGIIGRSVEIGGVPVTVIGVLRKDDGFPAGVDMWG
                     PLQLTASAAADRESENSMVFGRLRPGATVADAARDVSGVQRQLIRESPSTNAGWRFVT
                     APLKQFRVADYRPSVLLITAAVIGVLLIACANVGNLQLVRTLARERELAVRAALGAGR
                     AQLARQLVIEGLLLALTGGAAGVMVGEFGLAETKHIVPAYLTDLLPGLSTMSINWRVL
                     ALMLGVCVAIGVGLSAFPAFRAARTDLTGALKQGARGGTTGRKAARVRTTLVVSEIAL
                     AVMLVTGAALLIQSFTKLSAANTGLQSHHVLTMHLTVPSTFDEARVEKYHHTILRRLE
                     TLPGVRNAALVNLLPLSGHNI"
BASE COUNT         1253 a         1991 c         2027 g         1335 t
ORIGIN      
        1 cggccccagt agttgaacga cgacggtatc gtcgagtact cgcggtggtc cgtcgagtat
       61 ctgatgcgcg gcgcggagcg tcgcgactcc tacggcggtg ttgctggctg gtcggtctgg
      121 cacacctcaa agatgtgccg cagctcctac ctgttcaacc agtagctgaa cttgaccagg
      181 aacgtgttgt ccggccggat ctgcagcaga tctggatacg tctgcgtcca tccccgtgta
      241 tccggtgcgt tatcgtagcg ctggcgcccc tgcgtccaca cgagaaacag cgtcgatccc
      301 gggcggtatt cccagcgcac taccgtgttc gacttgaact cgcgatcgct gaatcccgat
      361 atcgccgacg ccggcggcgt gtaaccaaca tagcgatcgg agtatcgcgc ggcgcgcgga
      421 tccgcactca attcgcgtgg gtccgagtaa gtgccgttcg agacgaacgg ctgcgcgtag
      481 aactgaaacg acagcgccgg cgtcgcgatg tacgtcgcac gaatggcggt gacgagcgtg
      541 ttctggtgca gatgcgcgaa tgcgtagtgc attgtggaag tagcggtgtc atggaagttg
      601 ccgatccact gcgtgttgtt ctcgttgtgc gaggcggtga cgtcgagtga gagaagcagc
      661 tggctcgatg cgcgcacatc gagagtgggc tcaactgaga gattgtgcga ccgtccctcg
      721 tcagtacgaa agtagttcag atagacagcc ggcgtgagtc ggtgcctgtc atctccctgg
      781 atgcccatcc atggcgagat atacgacgat tgccgaacgg ctggtccgcc ccgcgcgcat
      841 ctgtcgcaat aggtgctgcc aagctgacca agcgtcgaac ccgcgttgaa tccccagttg
      901 ttgtgaaaga cgaagtgcac gttggagttc accgcgtgct ccagtgcgag accatcggtc
      961 gtccacgtgt tccagaaatt cccgttgatc cgcacgctgt tgtaaaaccg cgtcggcttc
     1021 cggaagttga gcgcccccca gttactccag ctctgctcat cggctcgacg aaggtagccg
     1081 atgtcattga tttcgtatcc ggccgactga cgctggaagc tggtctcgaa tgtcgcgaga
     1141 ccgccatact ttcccacgag caattcctcc gcgttcccgg tcagcgacgt gagactggaa
     1201 tcgacgcgca gctttccatc gggccgctgg tagtagtgca ccgcgctcat ctgcgtctgc
     1261 gttatcgcgg cggccgtccc cgtcacttcg ctcccggtaa gcgatccgga gatcttgtaa
     1321 ttgtcgttca ggaagcgatg cgcgaagtcc acaccgccga cggtcgctgt ctgtcgcaac
     1381 gcgtccgcgg tccatgagtc tgtgttgcgg tcgacgctcg tgagaacggc gccgatgtag
     1441 ctttttccgt cacggaactc gcgttgcacg cgcgccacac cgtagttggt cgtcggctcg
     1501 atggttctgt ccaacgtgcc cgtcgcccgc tccgtcaccg cgtcgagcac tcccaccgat
     1561 agtgacttgc cgatgcgccc actcaacttc gcggcaccca gtatcgtagt ggccgtcgga
     1621 gagctcgcgt caccgtaatt atcaattagt tgcggagtgc gaccaattct ccgagagtag
     1681 aataatccct cggactggca gttcaccacg ttgcagttga tgctgaacgc ataacggccc
     1741 tgcccctcga caaagaacgg tcgctgctcg ctgaagaagg tctcgaacgc gccaagattg
     1801 agcaccgatg ggtcggcctc cacctgcccg aaatcaggat tcaccgccgc cgtgagccga
     1861 aggctgggtg tgacgccaag cttgaggtcc gcgcccgccg agacgcgctg cgcacggccg
     1921 tacgacgagg cgccgacggt cgagacgttc ttcgttacca cgtacggaac cacttcgagt
     1981 ggatgggtcg atccaacgtc gccgattcca gtcaccgttc ccagctggga gaccgtcgca
     2041 ttcctgcttg gacggaacac cggccagctc acccgctcct tgaagcgatc gatgtcgcgc
     2101 cagattccga acccgatcgt gtgcacggtc gcattgttga agcccagctg cgacatcggg
     2161 atcgcgaact cggcggtcca tcccagtgaa tcgatcgatg tggcgacgtc ccagactccg
     2221 tcccacgtct gatcctcgtt cgtatcgtcg tacatcgcgt agtcacgctt gacgccacct
     2281 ggactcaccg cgaactcgaa tccgctgcgt ccatcgtgat acgaatcgat catgaccttg
     2341 agctgatccg tcggcggtct tacgtcgcgg cgcgcgagcg tcttgcgtat ctgcgccggc
     2401 tcgggatcga aggcgcgaat gaagacgtag atgttgtggc tgtcgtacgc aaccttgaac
     2461 tcggtgcgga aacgcggatc accgtcctct accggatcga actcgcggaa gtgcgtcacc
     2521 gccggtgcat tgcgccatac ggcatcgtcg tcgcgaccat ccagcacagg cggatgatct
     2581 gcatgcactg ccacaaccga tgtcatgtaa tctgatgaaa caactggctg ggacgcctgc
     2641 gtctgcgatg cctgtgcgtg ggcgagcgct ggagccgcta cagcaagaat cgtcgtgacc
     2701 gcgccgacaa tgagtcgcga cgctgagctg gaagatggag tcgggaagga cactggcgag
     2761 cgttgaatgg tgcattgacg ggcccgctgg tgcgcgccct ttctcgatta tgagatgctc
     2821 ggcgcgtcga aatggtttgt tccggtatcg gcctccttcg gtgttaccct cagtggcgcg
     2881 caggcagcgc cgtcagttca cgatggatac cgtgaatccg tcataaccct tcacgccaac
     2941 tgtttggacc gcagtgctgg tcacgagcgg gctcgcggac agcttgtcga agaaacggcg
     3001 cacaccctgc gtaccggcat cttccgtatc gctgttgatg acatcgccgt cccgcacgac
     3061 gttgtcgacg atgatcatgc tccctgcatg tgcgagcgtg accgcccagt cgaagtaggc
     3121 cggtatgttc tgcttgtcgg cgtcgatgaa tacgagatcg aatggctcgc gatcttcgcc
     3181 ggacagtttc ggaagcgtgt ccagcgcgct accgacccgc agctcgacga cgtctgcgaa
     3241 tcctgctcgc gctatgtttg ctctcgcaac gtccgcgtgc ctgggttcct tctccagagt
     3301 tacgattttg ccgccggcag cgaggccgcg cgcgagccat atcgtgctgt agccgccgag
     3361 tgtaccgatc tcgagaattg atttggcacg cagggtcgcg gcaagcagcg ccagcagctt
     3421 tccctgggtc ggagagacgc tgatcgcggg catgttcgcc gcttccatcg cagccagcgc
     3481 ggcgtccagc gcagggtcgg gcggaatcaa cttctccgcg aggtagccgt cgaccgctgt
     3541 ccatgtgtcc tgatccatcg tccttgctcc gtaatcgtga taccagccgt ggcggccggc
     3601 catgttcaga atgaatccag gtcaaagatg ttgcaaagcc cggtccgtcg aaggtccagc
     3661 ggccgtggca caggtgtctt gtcacataga aagactacac atagattagc tatgtattga
     3721 ttgtcgggga tttgagccct aatgccgacg gtgccgatga cttcatggga acttgagcca
     3781 gcaatcaggc tcgagcaggt tggaaagacc tatctcaccg atgatgtgga aacgcgcgcg
     3841 ctgtccaacg tgtcgttcga gatcgcgcgc ggcgagtacg tggccatttc gggtccgtcc
     3901 ggatgcggca agacgacgct gctgtcgatc ctggggcttc tcgacgccgc aactacgggc
     3961 cgctatttcc tcggcgggca cgacgttgcg aaactgtcgg gcggccagcg cgcccgcgtc
     4021 cgcaacagcc agatcggctt catctttcag gcgttcaacc tgctgggcga tctcacggtg
     4081 tgggagaacg tcgcactgcc gctgagttat cgcgggctgg agccacgaga ccggcgcaag
     4141 tgcgcactgg atgcgctcga gcgcatgggc atggctcatc ggctggatca ctatccgtct
     4201 caactgtccg gcggacaaca acaacgtgtc gcggtcgcac gtgccgttgc gggcgagccg
     4261 ctgatcattc tcgcggacga gccgactggt aacctcgaca gcgagaacgg cgatcaggta
     4321 atggagctgc ttgccgagct tcatcgcact ggctcgacga tctgcatggt gacacacgat
     4381 ccacgtcatg cccggcacgc cgagcgaacc atcaacctgc tggacggaaa cgtcgtcgcg
     4441 atagaatcac gagattcgat gctgcagcca gcctgatacc acaatatcca tcatgtcgaa
     4501 gcaaaccgat cgtgcagacg tacttccagg cactctggac atgctgattc tcaaaacgct
     4561 caccatcacg ccgatgcacg ggtacggaat cgcgcagcac atcctgcagg tatcgcgcga
     4621 agcgatccag gtggaggaag gctcactcta tccatcgctt cagcgcatgc aggtgaaggg
     4681 atgggtgacg tcggagtggg gccagtcgcc gacgggccgt cgcgcgcggt actaccggct
     4741 caccgccgct ggcaaaaagc agctcggcac agaggtctcc gatttccgaa aggcagtcga
     4801 agcgattcaa cgggtcatcc agacagtttg aggtgacgag ataatggcaa tgtggagctg
     4861 gattgcggcg acctccagac gtctgtcgtt tcgcgcgcac cgcgcgtcgc tggatgaaga
     4921 gcttcgcgat gagatgcagt ttcatatcga tatgctggca cgcgacaacg aggcacgcgg
     4981 gatgacgccg gaagcggcgc gagaggcggc gcgccggcag ttcgggagct cgacgatgct
     5041 acgggaagcg agtcggatgc actggtcgct cgggtggatc gacgcgctat ggcaggatgt
     5101 acggtacggc atccgctcgc ttattcgcac cgctggcgtg acagtgacag cgctgctcac
     5161 tctcacactt ggaatcggcg cgacagtcat ggtcgtagcg ctcgtcgatg ccacgctact
     5221 gcatccaatc gcactacgcg acgtcgatcg tatcgtaact atctgccaga cgaatgcggg
     5281 cccatcctgc caacagctcg ccaccggaaa ttacgtatcc ataagaagcg ctccaactgc
     5341 tcttaaggat gcggcgctga tgcagtactg gagcgctacg gtatcgggac gcgatggggc
     5401 gacagttgcg accggcgcgg tggttacgcc caattatttc gccgtactcg gcgtcacgcc
     5461 ttttctgggt cgctcgttca ctcgtgcaga cgccgatgct tccgcgtcgc aaccggcagt
     5521 cgtgattctg agctatggtt tctggcgcgg caacttcaat gctgatcctg gaattatcgg
     5581 gcgtagtgtt gagattggcg gcgttccggt caccgtaatt ggggtcctgc gcaaggacga
     5641 cggctttcct gccggtgtcg acatgtgggg cccgctccag cttaccgcca gcgcggccgc
     5701 agatagagaa tccgagaaca gcatggtatt cggcaggttg cggccaggcg caacagtagc
     5761 tgacgcggcg cgcgacgttt ccggcgttca gcgacagctg atccgcgagt cgccttctac
     5821 gaatgcagga tggagattcg tcaccgcgcc actcaagcaa tttcgggtag cggactacag
     5881 accttcggtg ctcctcatta ctgctgcggt catcggcgtt ctgctcatcg cctgtgccaa
     5941 cgtgggcaat ctgcaactgg tccgcaccct cgcgcgagag agggagttag ctgttcgcgc
     6001 cgcgctcggc gccgggcgcg cccagcttgc acggcagttg gtgatcgaag gacttctact
     6061 cgctctcacc ggcggcgcag ctggcgtgat ggttggtgaa ttcggattgg cggaaacgaa
     6121 acatatcgta ccggcttacc tgaccgatct tctgccggga ttgagcacga tgagcatcaa
     6181 ctggcgcgtg ctggcgctga tgctcggcgt gtgcgtcgcg atcggcgtcg gcctgtcagc
     6241 attcccggca tttcgcgcag cgcggacgga tctcaccggc gcattgaagc agggcgcacg
     6301 tggaggcacc acgggtcgca aggccgctcg cgtgcggact acgcttgtcg taagcgagat
     6361 cgcactcgca gtcatgctcg tgaccggtgc agctctattg atccagagct tcacgaagct
     6421 cagtgcggcc aatacagggc tgcagtccca tcatgtgctg acgatgcacc tgacagtacc
     6481 cagcacattc gacgaggcgc gggtagagaa atatcatcac acgatattgc gccggcttga
     6541 aacgctcccg ggcgtgcgca acgcggcgct tgtcaacctg cttccgctca gcggccacaa
     6601 tatcaa
//
LOCUS       DATIMD010000162         2641 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2370300, whole genome shotgun sequence.
ACCESSION   DATIMD010000162 DATIMD010000000
VERSION     DATIMD010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2641
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2370300"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(9..515)
                     /locus_tag="VLI40_03680"
     CDS             complement(9..515)
                     /locus_tag="VLI40_03680"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MogA/MoaB family molybdenum cofactor
                     biosynthesis protein"
                     /protein_id="HSU96302.1"
                     /translation="MNIAIVTVSDSVAHGTRADLSGDAIEEWAVARGDTVISRVATAD
                     DSVEIVRALIDVCDSGTCDLVITTGGTGLSRRDVTPEATRAVISAEAPGFGERLRDHA
                     TRFPRASLSRGIAGIRARTLIVNLPGSPNGVRDGLATLDPVVSHACDILSGRFTDHSA
                     EHRSTDGA"
     gene            complement(512..1603)
                     /gene="gcvT"
                     /locus_tag="VLI40_03685"
     CDS             complement(512..1603)
                     /gene="gcvT"
                     /locus_tag="VLI40_03685"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HSU96303.1"
                     /translation="MSQRTPLHDVHVALGAKMVPFAGFEMPVQYPAGITAEHKSVRES
                     VGLFDVSHMGEFMIRGAQAIDFANYVTTNDVASLSVGQAQYSTILNEGGTIVDDCLVY
                     RFPDHLMMVVNASNKDKDLAHISAYMDRFDCSIEDVSDRIALLALQGPRAQEVMARFT
                     DVNLDDIAYYHFQVATVAGVPDVILSRTGYTGEDGFELYFDASRAVELWNALMSDGSV
                     VPAGLGARDTLRLEMGMALYGNDIDDGTTPYEAGLGWLVKLKKGDFVGKEALERQKAA
                     GIPRKLIGFTMPDRAFPRHGYPVSFEGAASGEVRSGTMSPTLGIAIGTAYLPLAVAKE
                     GTQFEVEIRGKRLPAVVQKMPFYKNASHR"
     gene            complement(1600..2517)
                     /gene="argF"
                     /locus_tag="VLI40_03690"
     CDS             complement(1600..2517)
                     /gene="argF"
                     /locus_tag="VLI40_03690"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HSU96304.1"
                     /translation="MTTAHRDFLAIPDFSSAELESLFALADSMRAGTYTKKPLAGQTL
                     AMIFMKASTRTRVSFEVGTYQLGGHALFLSPRDVQLGRGEPISDTAKVLSRYVNGIMI
                     RTFAHADVEALAKDATIPVINGLTDLLHPCQVLADILTVRQQLGSIKGRKVAWIGDGN
                     NMANSWINAAYVLGFELSLACPEGYDPDAALVARAQTRAKVSVVRDPAVAAAGADVVT
                     TDVWASMGQEEEQAIREKAFRGFCVDAALMARAAKNAIFLHCLPAHRGEEVTADVIDG
                     PQSRVWDEAENRLHIQKAIMAVLMGGEKL"
BASE COUNT          513 a          839 c          768 g          521 t
ORIGIN      
        1 cgccaccgct acgcgccatc cgtgctccgg tgctcggcgg aatgatcggt gaaacgcccg
       61 ctcagaatgt cgcatgcgtg cgatacgacg gggtccagag tggcgagtcc atcgcgcacg
      121 ccattgggcg aaccgggaag attcacgatc aacgtgcgcg cgcggattcc agcgatgccg
      181 cgcgacagcg acgcacgcgg aaagcgcgtc gcatgatcgc ggagacgttc accaaatcct
      241 ggtgcttcgg cagatatcac tgcacgcgtc gcttcgggcg tgacgtcgcg cctggacagt
      301 cccgtcccgc cggtcgtgat tacgagatca cacgtgccac tgtcgcagac gtcgatcaga
      361 gcacgcacga tctctaccga gtcgtcagct gttgcgacgc gcgaaatgac agtatcgcca
      421 cgagcaacag cccactcttc gatcgcgtcg cccgacagat cggcgcgcgt tccgtgggct
      481 accgaatccg aaacagtgac aatcgcgatg ttcaacgatg cgatgcgttt ttgtagaatg
      541 gcatcttctg cactaccgcc ggaagacgct tgccccgtat ctccacctcg aactgcgttc
      601 cttccttcgc taccgcgagt ggcaggtacg cggtgccgat cgcaatgccg agcgtcggac
      661 tcatcgttcc gctccgtacc tccccgctcg ctgcgccctc gaacgaaacc ggatatccgt
      721 gtcgcggaaa cgcgcgatcg ggcatcgtga aaccaatgag cttgcgcgga atgcccgccg
      781 ctttctgccg ctcgagcgct tccttcccca caaagtcgcc cttcttcaac ttgaccagcc
      841 agccaagtcc ggcttcgtaa ggggtggttc cgtcgtctat gtcgttgccg tagagcgcca
      901 ttcccatctc gagacgcaac gtgtcgcgtg ctccaagacc tgcggggaca actgacccgt
      961 cgctcatgag tgcgttccac agctcgaccg cgcgggacgc gtcgaagtac aactcgaagc
     1021 cgtcctcgcc cgtgtagcct gtgcgagaca gaattacatc gggcacaccg gcgactgtcg
     1081 caacctggaa atgatagtac gcgatatcgt cgaggttcac gtcggtgaat cgtgccatga
     1141 cctcctgcgc gcgcgggccc tgaagcgcga gcagcgcgat gcggtcgctc acatcctcga
     1201 tactgcaatc gaagcgatcc atgtacgcac tgatgtgcgc gagatccttg tccttgttcg
     1261 acgcgttgac gaccatcatc agatgatcag ggaatctgta gacgagacaa tcgtccacga
     1321 tcgttccacc ttcattcaga atcgtggagt actgcgcctg accgacagac agcgatgcca
     1381 cgtcgttcgt cgtcacgtaa ttggcgaagt cgatcgcctg cgcgccgcgg atcatgaact
     1441 cgcccatgtg actcacgtcg aacaacccaa cgctctcgcg cacggacttg tgttcggcgg
     1501 ttatcccagc cggatactgg accggcatct cgaagccggc gaatggcacc atcttggcgc
     1561 cgagggctac gtggacgtcg tgtaacggag tgcgctggct caaagcttct ctcctcccat
     1621 gagtactgcc atgatcgcct tctggatgtg caacctgttt tccgcctcat cccatacgcg
     1681 gctctgcggg ccgtcgatta cgtcggcggt aacttcctcg cctcggtgtg ccggcagaca
     1741 gtgcaggaat atcgcgttct tcgcggcgcg cgccatcagc gctgcgtcga cgcagaagcc
     1801 gcggaatgct ttttcacgta tcgcctgttc ttcttcctgt cccatggacg cccacacgtc
     1861 agtcgtgacg acgtcggcgc cagccgcggc cacggccgga tcgcgcacta cggatacctt
     1921 cgcacgcgtc tgcgcacgcg cgaccagagc tgcatcggga tcgtaccctt cagggcacgc
     1981 gagcgacaat tcgaaaccga ggacgtacgc ggcgttgatc caggagttgg ccatgttgtt
     2041 tccatcacca atccacgcga ccttgcgacc cttaatgctg ccgagctgct gacgcactgt
     2101 cagaatgtcg gcaagcacct ggcacggatg taacaggtcg gtaaggccgt tgatcacagg
     2161 aatcgtcgcg tccttcgcga gtgcctcgac gtcagcgtgt gcgaaggtgc ggatcattat
     2221 tccgttcacg taacgcgaca gaactttcgc agtgtccgag atcggctcgc cacggcccag
     2281 ctgcacgtcc cgcggcgaca ggaacaatgc atgaccgccg agttgatatg tcccgacctc
     2341 gaaggaaact cgtgtgcgag tggacgcttt catgaagatc atcgcgagcg tctggccggc
     2401 gagcggcttt ttggtatacg tgcccgcgcg catggaatcc gccagcgcga acagcgattc
     2461 aagctcggcg gacgaaaagt cgggaattgc gaggaagtcg cggtgtgctg tggtcatcgg
     2521 tcgaaaattg cgggaaatgt ctactgcttc tgcctcatca attctagcgg actcagaccg
     2581 cagcgcgaac gatagtcgtg aagctggcgg aggccacacg gcggccattc accgtggcgc
     2641 g
//
LOCUS       DATIMD010000163         6173 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_641503, whole genome shotgun sequence.
ACCESSION   DATIMD010000163 DATIMD010000000
VERSION     DATIMD010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6173
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641503"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..2734)
                     /locus_tag="VLI40_03695"
     CDS             complement(59..2734)
                     /locus_tag="VLI40_03695"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSU96305.1"
                     /translation="MRLFDILAAQRRVIYLVVVLLSAAGVWMARSLPSAIYPELLFPR
                     ITVVAQGSSLGARQIEFSVTRPLEEAVSTIPGVTRVKSKSIRGASEISVTFAPQTDMQ
                     IALQLTQTRVSQARSALPPEMDIEVARLTPSLFPILSYNLEGTDPSTLYDIARYQIRP
                     VLSRVPGVGRVDVQGSSIREIEVVADPSTLAAQGLTYDDLASAIRNAISPAAVGRAAR
                     DYKQYLIVTDQEAHSVADVGAVVLPNGLHVRDVANVQMGTEDQVSLVRGDGRPAALLN
                     ITRQPGGNTVDIADSVAAIAATIRKTLPPGVIFKPVYDQAALVRDAVTSVRDAMIIGA
                     VLAIIVLFAFLRHGRITAVSATAIPLTLAITVFVMSMIGQTFNLMTLGAMAIAVGLVI
                     DDAVVITENIARHLSFTPDRHIAIREALQELILPVTTSTITTVVVFLPLGLLTGVVGQ
                     FFKALSITLTIAVLVSLLLAVTLIPLLSEQFVRSEDAAPENTGAASDARRGILHRIAR
                     GLDSLANVYERSLVAVLHHVGIMIAGAVALVVLGVVAAKYTGTGFLPEMDEGAFVLDY
                     FTPGGTALSETDREVHIAEKILAQTPEIAGTSRRTGAELGLFATQQNTGDLVARLVPQ
                     SRRSRTIFEVMDDVRGRITAAVPRLHIEFVQILSDVINDLAGAARPVEIKLFGDDLNQ
                     LEAYARTLSDPLSKVDGVEDLFNGVSEPSAEMLLHVGAAESARAGLTPTAVGTAVQGA
                     LLGVPAGEVRTEDRAIGVRVRAPDAVRFDANKLGDLPLVTASSSSRQAVPLSAVATLT
                     PTETRAELDRENQQQMIAITSDVSGRSLGGVMTDVKSVLAAHPPPHGIRVELGGQYAG
                     QQDAFHALLLVLLLAALSVTAVMVVQFQSFVEPPQ"
     gene            complement(2741..3787)
                     /locus_tag="VLI40_03700"
     CDS             complement(2741..3787)
                     /locus_tag="VLI40_03700"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSU96306.1"
                     /translation="MMDRRPLLALSALLVFSACGKKDTGAESDVTPVVTVETAQVRTA
                     AFAPTVRAVGTVVSSPTGYAELSAPAPSRIARVLVTAGQSVKAGEALVELDAAALRAA
                     SGGADAALAAAQSAYDRASQLAQQGIVARKTVDQARSDLAQAQAAAVGARRTYALSTL
                     RAPISGVVTRMSAVTGASADPAQVLVAVADPRALQVLLQLSPADAGAVHPGALVSLAE
                     NDTPSAPSVARGVVSTIGAAIDSATRAVPVRVRVTSSTRPLRLGETLTGKVATTGATS
                     AMSIPAAALVPDSAGFKVYVVKQGVAHATPVEVGTRGDSLVQITKGLAVGQTVVTTGA
                     YGLEDSSKVSVPKP"
     gene            complement(3784..5034)
                     /locus_tag="VLI40_03705"
     CDS             complement(3784..5034)
                     /locus_tag="VLI40_03705"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU96307.1"
                     /translation="MTTNTRAVRSMQIVRAIGCAGVLAILSPVPILGAQQPLSRAEAI
                     QAALGKSVLVAAISADTVAASARLRSAREYPNPSLTMSYSKDAPQNHFSFDIPLDLPG
                     VRGPRVRAAEAARTSARFGFLAARTAIELNVDTMYTTAQGAELRAALSHVIAVDAAKL
                     LNDTKARRDAGDASDLDVNLAEVSAAQAANVANADSLEAIDTRLELQTAMGIRGDTVV
                     VALRDSLAAPSVQIATSALDLTATPTVAAASAAVTSAQQTLLFQRRSVFGVPSIQLGA
                     DAKDPTGAEKGLLPTVGIALPIPFFNRNGGAIDAAHADVTRAQAELTIARLNAAAELA
                     RAYRTQSVAQSRIARDRTIMDAATRNVSMAERAYTAGEMAIGNILETRRAQYDAQAQY
                     VTDLVSANVAAALVRVLTANGVTQ"
     gene            complement(5096..>6173)
                     /locus_tag="VLI40_03710"
     CDS             complement(5096..>6173)
                     /locus_tag="VLI40_03710"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HSU96308.1"
                     /translation="PQKVSPNHHALAERFGDFDRFFTNAEVSADGHNWSTAAYATDYL
                     EKTVPSQYSGRGRSYDYEGTNGGYDRADIRDDDVSEPASGYLWDLAERAHVTLRNYGE
                     FVVRDTANGRAVYVGDKPFLATHTNPDYPGFDLNLLDQARVDVWLKEFAGYVKSGDMP
                     QLEIVRLPDDHTAGTRAGSRTPRAFMADNDLALGRMIEALSRSPFWKNTVVFVVEDDA
                     QNGPDHVDSHRAPAFVISAYSRGGVVHRWTNTTDVIATMSEILHTGSLSQFDFYGRPL
                     RDIWTSKPDLRPYVAIVPAVDLNEKNTKASVGAAASARLDLSEEDRADENSFNRILWK
                     AIKGETTPYPGVVRVSGLEWRRAR"
BASE COUNT         1168 a         1957 c         1911 g         1137 t
ORIGIN      
        1 ccgcaatcca ggcgctcgcg cacgatcttc gaagtcatgg acgacgttcg tggcaggatt
       61 actgcggcgg ttccacgaac gattgaaact gcacgaccat cactgccgtc acactcagcg
      121 cagcaagcag cagcaccagg agaagtgcat gaaatgcatc ctgctggccg gcgtactgac
      181 cgcccagctc gacgcggatc ccgtgtggtg gcggatgcgc cgcgagaacg ctcttgacgt
      241 cggtcatcac gccaccaagc gagcggccac tgacgtcgct cgtaatcgcg atcatctgct
      301 gctggttttc gcgatcgagc tccgctcgcg tttcagtggg cgtgagtgtc gcgacagccg
      361 agagcggaac ggcctgccgt gatgacgacg atgcggtaac gagcgggaga tcaccgagct
      421 tgttcgcatc gaaccgaact gcgtcgggcg cgcgcacgcg aactcctatt gcccgatcct
      481 cagtgcgtac ttcgccggcc ggaacgccga ggagcgcacc ctggacggcg gtgccgacgg
      541 cggtcggcgt gagtcccgca cgcgcagatt ccgcggctcc tacgtgcagc agcatctcgg
      601 cgcttggctc gctcacgccg ttgaacagat cctccacacc atcgaccttg ctgagcgggt
      661 cgctgagcgt ccgcgcatac gcctcgagct ggttgagatc gtcgccgaac agcttgatct
      721 cgaccggtct ggcggcgcca gctagatcat tgatgacgtc cgataggatc tgcacgaact
      781 cgatgtgcag gcgtggaacc gccgcagtaa tcctgccacg aacgtcgtcc atgacttcga
      841 agatcgtgcg cgagcgcctg gattgcggca cgagacgcgc gaccaggtca cctgtattct
      901 gttgcgtcgc gaacaggccc agctcagcac cggttcgccg cgacgtaccg gcgatctcgg
      961 gcgtctgtgc gagaatcttc tccgcgatgt gaacctcgcg atccgtttcc gacagcgcag
     1021 ttccaccagg ggtgaagtaa tcgagaacga atgcaccctc atccatctcg gggagaaatc
     1081 cggtgcccgt atattttgca gcgaccacac ccagcactac cagcgccact gcaccggcta
     1141 tcattatgcc aacgtggtgc agcaccgcaa ccagtgagcg ctcgtacacg ttcgcgagcg
     1201 aatcgaggcc ccgcgcgatg cggtgcagga tccccctgcg tgcatcagac gctgcgccgg
     1261 tgttctccgg tgcagcatct tcggatcgga cgaactgctc gctcaacaaa ggaatgagcg
     1321 tgactgcgag caacaaggat acgagcaccg ctatcgtcag cgtgatcgag agcgccttga
     1381 agaactggcc tacgacccct gtcaggagac caagcggcag aaagactacg accgtcgtga
     1441 tcgtggacgt cgtgacaggg agaatcaact cctgcagcgc ctcccgaatg gcgatgtgac
     1501 ggtcgggggt aaatgaaagg tgccgcgcga tgttctcggt tatgacgact gcgtcgtcga
     1561 tgacaagccc cacggctatg gccatcgcgc caagcgtcat cagattgaac gtctgcccga
     1621 tcatggacat gacgaacacc gtgatcgcga gcgtgagcgg gatcgcggtc gcactgacgg
     1681 ccgtgatccg tccgtgccgg agaaatgcga acagtacgat gatcgcgagc actgcaccga
     1741 taatcatcgc gtcacgtacc gaggtgaccg cgtcacgtac gagcgctgcc tggtcataca
     1801 cgggtttgaa gatcacgcca ggaggtagcg ttttccgaat ggtggctgca atggcggcta
     1861 cactgtcggc tatgtcgacg gtattgccgc cgggctgccg ggtgatgttg agcaacgccg
     1921 ccggccgtcc gtcaccgcgc acaagactca cctgatcttc cgtgcccatc tgaacattcg
     1981 cgacgtcgcg aacgtgcaga ccgttgggca ataccaccgc cccgacgtca gccacggagt
     2041 gggcctcctg gtccgtgacg atcaggtact gtttgtaatc ccgcgcggct cggccgaccg
     2101 ctgccggcga tatggcattg cgaatcgcac tggcgagatc atcataggta agaccctgcg
     2161 ctgcgagcgt cgacggatct gccaccactt ctatctcgcg aatgctgctt ccctgtacat
     2221 cgacccgtcc gacaccgggg acgcgtgaca gcaccggccg gatctggtat cgcgcgatgt
     2281 catacagcgt ggacggatcc gtgccttcga gattgtacga gagaattggg aagagcgatg
     2341 gtgtgagacg cgcgacttcg atgtccatct ccggcggcag agcactgcgc gcctggctca
     2401 cgcgcgtctg cgtgagctgc agagcaatct gcatgtcggt ctggggcgcg aacgtcaccg
     2461 agatctcaga tgcgccccgg atcgacttgg acttcacgcg cgtgacgccc gggatggtgc
     2521 tcaccgcttc ttccagcggc cgggtcaccg aaaattcgat ctggcgtgcg ccgagtgacg
     2581 aaccctgagc gacaaccgtg atgcgtggga acaataactc cggatagatc gcggatggca
     2641 acgaccgcgc catccagacg ccggctgcgc tcaacagcac gacgaccagg tatatgacgc
     2701 gtcgttgcgc ggcgagtatg tcgaatagac gcaccgttcg ttacggcttg ggcacggaga
     2761 ctttgctact gtcttccagt ccatatgcgc cagtcgtcac caccgtctgg cccaccgcga
     2821 gccccttggt gatctgcacg agcgaatcgc cacgagtgcc gacttcgacc ggtgttgcat
     2881 gtgcgacacc ctgcttgaca acataaacct tgaatccggc actgtcggga acgagcgcgg
     2941 cagccggaat ggacatcgcg cttgtcgcac cggtagtcgc tactttcccc gtcagcgtct
     3001 cgccgagtcg gagtggacgc gttgacgaag tgacgcgtac tctcaccggc acggcacgcg
     3061 tggctgagtc gatcgccgcg cctatcgtgc tgacgacgcc gcgtgctacc gagggcgcgg
     3121 aaggcgtgtc gttctccgca agacttacga gcgcacccgg atgcaccgcg cccgcatctg
     3181 ccggcgacag ttgcagcagc acttgaagcg ccctgggatc cgcgaccgcg acgagcacct
     3241 gcgcgggatc ggcggacgct ccggtgactg cactcattct ggtgacaacc cctgagatcg
     3301 gagcccgcaa cgtcgacaga gcgtatgtgc ggcgggcgcc gaccgcagcc gcctgtgcct
     3361 gagcaagatc cgaccgcgcc tggtcgaccg tcttgcgtgc gacgattccc tgctgcgcaa
     3421 gctgcgaggc acgatcgtac gcgctctgcg ccgcggccag tgcggcatcg gcgccacccg
     3481 aggccgcgcg cagggcggct gcgtcgagct cgaccagcgc ttcgccggcc ttcacactct
     3541 gtccggctgt cacgagcacg cgggcgatac gtgatggcgc cggtgcactc agctcggcgt
     3601 atccggttgg gctggataca acggttccga cggcgcgaac cgtcggagcg aacgccgccg
     3661 ttctgacctg cgccgtttct acggtgacaa cgggagttac atcggattcg gcaccagtgt
     3721 ccttcttccc gcaagccgaa aatacaagca acgctgacag cgcgagcagc ggccgacgat
     3781 ccatcattgt gtcactccgt ttgccgtgag cacgcgaacg agcgcagccg cgacattcgc
     3841 agacacgaga tcggtgacgt actgtgcctg cgcatcgtac tgtgctcgtc ttgtctccag
     3901 gatgttgccg atcgccatct cacccgcggt ataggcgcgc tccgccatgg agacattcct
     3961 ggtggctgca tccatgatcg tacgatcccg cgcaatgcgc gactgggcga ccgactgtgt
     4021 acgatatgcg cgggcgagct cggcggcagc gttgagtcgc gcgatagtca gttcggcctg
     4081 cgctcgcgtg acatcggcgt gcgcagcgtc gatcgcgcct ccgttgcgat tgaagaacgg
     4141 aatcggcaga gcgataccta cggtgggcag cagtcccttc tccgccccgg tcggatcctt
     4201 cgcatcggcg ccgagttgga tggacggcac accgaatacg ctccgacgtt gaaagaggag
     4261 cgtctgttgt gcggaggtaa cggcagcgct cgcggcggca accgtcggtg ttgcggtgag
     4321 atccagtgca ctcgtcgcaa tctggaccga cggagcggca agcgagtctc gtaacgcaac
     4381 gacaactgta tcgccacgga tccccatcgc ggtctgcagc tcgagccgag tgtcgatagc
     4441 ttcgagcgaa tcagcgttcg cgacgttggc ggcctgcgca gcggatactt cggcgagatt
     4501 cacatcgagg tcgctcgcat cgcccgcgtc tctgcgggcc ttcgtgtcat tcagcagctt
     4561 tgctgcatcg accgcgatta cgtgtgacag ggcagcacga agctcggcgc cctgtgccgt
     4621 ggtgtacatc gtatcgacgt tcagctctat cgcggtgcgc gcggcgagaa agccgaaccg
     4681 tgcgctcgtg cgcgcggcct cggcggcccg aacccgcggc ccgcgaaccc cgggaaggtc
     4741 caatggtatg tcgaatgaaa agtgattctg cggagcgtcc ttggaatacg acatggtcaa
     4801 cgacggattc ggatactcgc gcgccgatct aagtcgcgcc gacgcggcga cggtgtcggc
     4861 gctgatcgct gcaaccagca ccgacttgcc aagtgcagcc tgaatcgcct cggccctgct
     4921 gagaggctgt tgtgctccga ggatcggaac aggactcagg atcgcgagca cacccgcgca
     4981 tccaatggcg cggacgatct gcatggacct gacggcgcgt gtattggtcg tcacgcggtc
     5041 aagctagtca gcttcacctg tcacggacat tacaccggcg tctggcgctc gcatgctacc
     5101 gcgctcgtcg ccactccaaa ccggagacgc gcacgactcc gggatatgga gtggtttcac
     5161 cctttatcgc cttccagaga atgcgattga agctgttctc gtcggccctg tcctcctccg
     5221 acagatcgag ccgcgcggac gcggcggctc cgacgctcgc cttggtattc ttttcattaa
     5281 gatcgacggc cggcacgatc gccacatacg gcctcagatc cggcttcgac gtccatatgt
     5341 cgcgcaacgg ccggccgtag aagtcgaact gggacagcga ccccgtgtgc aggatctcac
     5401 tcatcgtcgc gatcacatcc gtggtattgg tccagcgatg aactacgccg cctcgactgt
     5461 aggcggagat gacgaatgcc ggggcgcgat gcgaatccac gtgatcggga ccgttctgcg
     5521 cgtcatcctc gaccacgaaa acgacggtat tcttccagaa cggggagcgc gacagcgcct
     5581 cgatcatgcg gccgagcgca agatcgttat cggccatgaa agcgcgcgga gttcgagatc
     5641 cggcccgagt gccggcggta tggtcgtcgg gcaaccggac gatctccagc tgcggcatgt
     5701 cgccgctctt tacatagccc gcgaattcct tgagccagac gtcgacccgg gcctgatcca
     5761 gcagattgag gtcgaatccg ggatagtcag gattggtatg tgtcgcgaga aacggcttgt
     5821 ctccgacgta caccgcgcga ccgttggcgg tgtcgcgcac aacgaactca ccatagttgc
     5881 gcagcgtgac gtgagcccgt tccgcgagat cccacaggta gccgctcgcc ggctcgctca
     5941 catcatcatc acgtatatca gcccgatcgt agccaccgtt cgtcccctcg tagtcgtagc
     6001 tgcggccacg tccggagtac tgactcggaa ctgtcttctc cagataatcg gtagcatacg
     6061 cggccgtgga ccagttgtgt ccgtcggcgc ttacttcagc gttggtgaag aagcgatcga
     6121 aatctccgaa ccgctccgcc agcgcgtgat gatttggcga aactttctgc gga
//
LOCUS       DATIMD010000164         2886 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2949434, whole genome shotgun sequence.
ACCESSION   DATIMD010000164 DATIMD010000000
VERSION     DATIMD010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2949434"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..730)
                     /locus_tag="VLI40_03715"
     CDS             complement(<1..730)
                     /locus_tag="VLI40_03715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96309.1"
                     /translation="MSLIVRITTCAAVLVAAIPAATSAGAQGVASSQGYQDPPESIRR
                     ILDAPPAATGSVSPDGKWIVIAAREPAVTTIADMAEPTLYLAGRRFHPIASYRVDTVG
                     IRSMRLRPVSGSAAKPVPVPAGGRIAQYAWSPDGHMIAYTTVDKTLGMGIKLFPVSTA
                     TEIPVSAAGLRGKLGAPSWSHDGKYVALTEATRNGTALWMVNVATHTAKRVTPYTINT
                     VTGGCDWLSKAPQLVCIMNVAARGA"
     gene            complement(828..2684)
                     /locus_tag="VLI40_03720"
     CDS             complement(828..2684)
                     /locus_tag="VLI40_03720"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96310.1"
                     /translation="MTDENDVAEFYSRRIAGLRASHGVAAQQWRRLANLRLVVFVLAA
                     ASVWWLVDAGPGMRTIPAAALGITLVLFAYLVARSSRARARVTRLADLVLMNEEAVHR
                     VRREWSALEQRSWPDVPVSHPYAYDLDVFGSASLAQLFPGVSAAPGRTTLASWLLSPA
                     SVDDLRRRQEAVAELKDRIDWRDELVLHTRRITTGAERLRAFVEWANHEDWSADDGWI
                     FVAAFALPVALVLLAAAQAVGVVSGPYWLIPIALGGSLTARFKTPLKIALGQVQGQRN
                     MLKGYATVTQLVSTESFESRALRDIQRDLAGDANAAGQMRALERLADCADVRLSPMLH
                     FVVQAFMLWDFHIAYLLARWKRDAGKHIGGWLDAIGIVESLAALATLAYDNPDWAFPD
                     VGARDPAIVSATALGHPLLPASSRVANDVTVGPERTLLFVTGSNMAGKSTLLRAIGLN
                     VVLAQAGSVVCAQAMTCPPVLLYTSMRVQDSLARGVSYFMAELERLKLIVDAAEAVRE
                     SHQQKLMYLLDEILHGTNSAERLIAARHVLVRLMDLGAIGAVTTHDLQLADASVLEHA
                     AQHVHFQEVFSRTADGRATMSFDYKLRPGKATSSNALKLLELVGLTGNGKIS"
BASE COUNT          570 a          955 c          838 g          523 t
ORIGIN      
        1 gcgcgccgcg tgccgcgacg ttcatgatgc aaacaagctg cggcgccttg gacagccagt
       61 cgcatccacc cgttaccgtg ttgatggtgt atggtgtgac gcgtttcgcc gtgtgcgttg
      121 caacgttcac catccagagc gcggttccat tccgcgttgc ttccgtcaat gcaacgtact
      181 tgccgtcgtg cgaccatgac ggcgcgccga gtttgccgcg cagacctgca gccgaaaccg
      241 gtatctccgt cgcggtggat accggaaaca gcttgatgcc catccccagc gtcttgtcga
      301 cggtcgtgta agcgatcatg tgaccatcag gactccacgc gtactgcgcg atccgtccac
      361 ccgctggtac gggtaccggt tttgccgcgc tcccggagac cggtctcagg cgcatcgatc
      421 gaattcccac agtgtccacc cgataactcg cgatcggatg aaaccgccgg cccgcgagat
      481 acagcgtcgg ctccgccatg tcggcgatgg tagtcaccgc cggctcacgc gccgcgatga
      541 cgatccattt tccgtccgga ctgacactcc ccgttgcggc aggcggcgcg tccagaatgc
      601 gacggatgga ttcaggcggg tcctgatagc cttgcgacga cgcgacgccc tgagcgccgg
      661 ctgaagtagc ggctggaatg gcggccacca gcacggccgc acaggttgtg atccgaacga
      721 taagcgacat tgggtcccct gtgtgcgtgt gcgcgggtat gatgggtacg tggtatgtac
      781 gccggccaaa cgtgtggcgt tggtgggctg gtgtcaaatg caaccgccta cgaaatcttc
      841 ccgtttcccg taagcccgac cagctccagc aacttcaacg cgttgctcga cgtcgctttc
      901 ccgggcctca gcttgtaatc gaacgacatc gttgcacgac cgtcagccgt gcgcgagaat
      961 acttcctgaa agtgaacgtg ctgcgcggca tgctccagca cgctcgcgtc cgcaagctga
     1021 agatcgtgcg tcgtcaccgc gccgatcgca cccagatcca tgagccgcac cagtacgtgc
     1081 cgcgctgcaa tcagacgctc ggcggaattc gtcccatgca gaatctcgtc cagtagatac
     1141 atcaactttt gttgatgcga ttccctgacc gcctctgcag cgtctactat cagcttgagc
     1201 cgctccagct cggccatgaa atacgacacg ccgcgcgcga gcgaatcctg cacgcgcatg
     1261 ctcgtgtaga gcaataccgg tgggcatgtc atcgcttgag cgcataccac cgatcctgcc
     1321 tgcgcaagaa cgacgttcaa cccgatggcg cgcagaagag tgcttttccc cgccatgttg
     1381 gatccggtca cgaacagcag cgtgcgctcc ggtccgaccg tcacatcatt ggcaaccctg
     1441 ctcgatgcag gcagcaacgg atggccgagc gccgtcgccg acacgatcgc cggatcgcgc
     1501 gcgccaacgt ccggaaatgc ccagtcggga ttgtcatacg cgagagtggc gagcgctgcg
     1561 agactctcga cgatgccgat cgcatcgagc catcctccga tatgcttccc ggcgtcgcgc
     1621 ttccacctcg ccaatagata cgcaatatga aagtcccaca gcatgaacgc ctgtactacg
     1681 aaatgaagca tcggtgacaa tctcacgtct gcacaatcgg ccagtcgctc gagcgcgcgc
     1741 atctggccgg cggcgtttgc atcaccggcg agatcgcgtt ggatgtcgcg caacgcgcgc
     1801 gactcgaacg attcggtcga cacgagctgc gtaactgtcg cgtatccctt caacatgtta
     1861 cgctggccct gcacctggcc aagcgcgatc ttgagcggag tcttgaaccg tgcggtgagt
     1921 gagccgccga gtgcgatcgg tatcaaccag tatggacctg aaacgactcc caccgcttgc
     1981 gccgccgcca gaagtaccag cgcaacgggg agtgcgaacg cggccacgaa tatccagccg
     2041 tcatcagcgc tccaatcctc atgattcgcc cactcgacaa acgcgcgcag ccgctcggcg
     2101 ccggttgtta ttcgccgcgt gtgaagcacc agctcatccc gccagtcgat cctgtccttc
     2161 aattccgcta cggcttcctg gcgcctccgc aagtcatcca ccgatgccgg cgacaacaac
     2221 cacgacgcga gtgtcgtacg ccccggtgcg gcactgactc ccgggaataa ctgagccagc
     2281 gacgccgagc cgaacacatc cagatcgtac gcatagggat gcgaaaccgg aacgtcaggc
     2341 catgaacgct gctcgagcgc ggaccattcc ctccgaacgc gatgcacggc ctcttcgttc
     2401 atcagcacga gatcggcaag gcgagtcacc cgggcccggg cccgcgagct gcgcgcgacg
     2461 aggtacgcga acagaacgag cgtaatgccg agggcggcgg cgggaattgt tcgcattcca
     2521 gggcctgcgt ccaccagcca ccaaaccgac gccgcagcca gcacgaatac gaccagacgc
     2581 agattggcta ggcgccgcca ttgctgcgcg gcgacgccgt gcgatgcacg cagacccgcg
     2641 attcgcctgc tgtagaactc cgcgacgtcg ttttcatccg tcacttggca tctcgctgtg
     2701 gatcggggca ctcccggaag tattcgggcg ttcgtggacg gcaggcacca gaatttgcat
     2761 tactcaccgc tcgaaattga agccatcgct cacgcatgga cccggacttc ctgctccggt
     2821 gcaatgcgcg ccgacttcga gccagagaga tgagtcgatg aacagccaag atacgtccgc
     2881 ggacgg
//
LOCUS       DATIMD010000165         9404 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1505697, whole genome shotgun sequence.
ACCESSION   DATIMD010000165 DATIMD010000000
VERSION     DATIMD010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9404
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1505697"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            348..1112
                     /locus_tag="VLI40_03725"
     CDS             348..1112
                     /locus_tag="VLI40_03725"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSU96311.1"
                     /translation="MRLIVVEDEPIARDGLCALLAAEQSVEVVGSFASAEAARRGVRS
                     ALPDGMFVDVEMPGEGGMDFVRSIPAISRPHVVFVTAHENYAAKAFEVEAVDYVLKPI
                     DERRLAEAVERVRRAIEIDANARMHARLKGVLADGLSGDDDHLARISARVGDRLVVVK
                     LSDVSWIEADGDYMRVHSKCHALLVRMTMRELERRLDPSMFVRAHRSALVNIDFITSV
                     ELLPHGEHVAMLSDGARVRVGRTYRSGLFEALGERT"
     gene            1109..2239
                     /locus_tag="VLI40_03730"
     CDS             1109..2239
                     /locus_tag="VLI40_03730"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSU96312.1"
                     /translation="MKIQRSAITAAVFSFSIATVLGIIGSAHHHAMMIAEGSPMPWRH
                     AAVMEMPFWYAAAILTPALVWMLRRFPDRTHGAARAVQHVAIALVWVTLQTALEMGAR
                     TMLGTGLSGPVPTLIQLIVSSLTDGFTGRLLIYGEIVGVIYAFTYYDRYRERELAAAQ
                     LETQLAEARLRMLRMQLNPHFLFNSMNTVAMLVRAGRSSESVKMLLALSTLMRDALRD
                     DAPDSGPLEDELSLLNRYVGVEQVRFGGRLAFDVDVPDPLRSATVPSFLLQPLVENAI
                     RHGRATSDGAAMIGVRAERVDDRLVLSVWDDGARIAAPANNSNNNSNYDFNYESRGVG
                     LRNVRDRLLQLYGSAQSFEIGRADSRTIATITIPIQFAAAVS"
     gene            complement(2327..3229)
                     /locus_tag="VLI40_03735"
     CDS             complement(2327..3229)
                     /locus_tag="VLI40_03735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96313.1"
                     /translation="MPPNDNDTAWVPVNVAAGDTAIIIPRLFHTSTVATSDTMYVISS
                     LGRHGGGRIAGTPAAQRAVAEIVTWTGATLPVKAGWMSLSGLDKNGASGTLSGIDDSP
                     TPCLPGGNLAGVMVPGSPGYTGSTSPLSGNPPLDNTTLGPTPQTAAAYVAGLGIDWAD
                     WSQGLNLPNVWRTSDHGGSFPSFSDTTYYPIVYVNGDVPMLPSGRGLLVVSGDMTMNG
                     LTTWNGMVLVGGTVTANGNDNIEGSVISGLNLVTGSPAVAAGSIGNGTKTIVYNSCEV
                     KKALAGTHALVPRRGTWMDNWKTY"
     gene            3230..3463
                     /locus_tag="VLI40_03740"
     CDS             3230..3463
                     /locus_tag="VLI40_03740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96314.1"
                     /translation="MDGTSGPESWIFGMAEICIQSLLCNPESARLQLLVIDGATLSAD
                     KRQAGHDGDGNYSDRYERRNQREAATVRYDRIW"
     gene            complement(3478..4404)
                     /locus_tag="VLI40_03745"
     CDS             complement(3478..4404)
                     /locus_tag="VLI40_03745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HSU96315.1"
                     /translation="MKSTLPLRPLNPLLNPLRRGVTLIELMIALVLLALVSTSLTQII
                     RSQVRFADAQGTANQARYISRASLNLLLSDVRMVDADSGIVVATPDSFTVTAPYAEGI
                     VCGTSTSGSGATVIALLPYDSVAYAEGGYSGYAYIDTTTTGTAFRQVYQYKFSGVSPV
                     TLDSGSVASSAPCNTSKDAVRIFRAGAVAVQPVAPTQAQYQAAMLVRRITYAFRASTS
                     VPGARGLFRTVVNGTHGSEEVAAPFDTSARFMYYLNTGTKSASASGVTLNTVRGIELQ
                     LNAKSDHIVAGASRPESAPMTTAIFFKNRPVK"
     gene            complement(4417..4821)
                     /locus_tag="VLI40_03750"
     CDS             complement(4417..4821)
                     /locus_tag="VLI40_03750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HSU96316.1"
                     /translation="MSARREQHQMSRRRAGFSILEVLIALVMLTIAVTSLTSVALAAA
                     RQGRRISGRSFATGLLTQEIDRAVAAPIESLAVQIGQTRLDTPVVANPWTYARRVTIS
                     GRADSLTVGVAILPLSPSQRPDSVTQTVLRTR"
     gene            complement(4818..5345)
                     /locus_tag="VLI40_03755"
     CDS             complement(4818..5345)
                     /locus_tag="VLI40_03755"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HSU96317.1"
                     /translation="MPKLLTSTDRCPRHLSRSEPRAIAPGRSPARHRRGFTLIEMLIA
                     LSILAITTAMAAPRMSVIMRQQRVNRTSQIVASDIRAAFTSAARGRVPVRVSFIFASR
                     RYAITNRVTGDTIIQRNLSSGDLNVSALAGSVTSLDIFPSGIATSSDTIVIGDAATYL
                     RRVAVSRVGAVRVLP"
     gene            complement(5558..5629)
                     /locus_tag="VLI40_03760"
     tRNA            complement(5558..5629)
                     /locus_tag="VLI40_03760"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5595..5597),aa:Cys,seq:gca)
     gene            complement(5700..6398)
                     /locus_tag="VLI40_03765"
     CDS             complement(5700..6398)
                     /locus_tag="VLI40_03765"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HSU96318.1"
                     /translation="MQPLTPIHLPVVKTARYYQIGAPNPLVRDVWVVLHGFSQLAADF
                     AVPFQPLEADSRLIVVPEGLSKFYLDTRPGHSGASKVGALWLTREDREVEIIDIVNYL
                     ERLYERLLEELASHGVDRDRIRVHALGFSQGGPAASRWAARGSAVIDHLVPWAHAIPQ
                     DVNLRALAERRPRLTIDMVYGTRDRFIGEDAVEEQRAVLESSGVPYAMHPFSGGHALN
                     LAMLRQLMDQLVGE"
     gene            6526..8382
                     /locus_tag="VLI40_03770"
     CDS             6526..8382
                     /locus_tag="VLI40_03770"
                     /inference="COORDINATES: protein motif:HMM:NF017077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE3 domain-containing protein"
                     /protein_id="HSU96319.1"
                     /translation="MSLRLKLTAALGVALVILLVGVASLYALRQSTNAAAAVEHSEMV
                     RVQLERALTTIVNAETGQRGYLITQDTSYLTPYASARTDLDREIASIRALTSDSPLQQ
                     SRIDSLALIADAKLVTMNETVVLTQSGNRDSALKIVMTGRGAELTREARNTIDDMEAT
                     QAEQLAERINIYNSRKLAVTLVTVVGSLLGATLSILTMLWLRSGVRQLEEAKDTIEEQ
                     SAELADELATSHSLADKLAASNNELQRANVATESARGRFEQLLQSTDEAIFGIDADGL
                     CTFINASGARLLGYERNELLGRNMHEVSHHHRADGTPYPIEQCPIHKAMLDGTSIRIA
                     DEVFWTHTGRALPVEYTSSPIASNGRTVGAVIAFNDITARRNAERERERLIAALARSN
                     QELDQFAYVASHDLKAPLRGIANLSQWIEEDLGDNVPPDVSEKMTLVRGRVQRLEALI
                     DGILQYSRAGRMRSGVEDVDVELLLKDVVELLAPPPEVVVTIEPGMPTIRTERTPLQQ
                     VFMNLINNAIKYNRHPGARITVSSRDAGNMYAFSVTDNGPGIEPEYHERIFGIFQTLE
                     SRDRVEGTGIGLSVVKKTVELHGGSISVRSALGEGATFTFEWPKSTEEKTAA"
     gene            8379..8807
                     /locus_tag="VLI40_03775"
     CDS             8379..8807
                     /locus_tag="VLI40_03775"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU96320.1"
                     /translation="MSIERTLNLILVEDDEIDVMNVRRALERAHVANPVFVAHNGLEG
                     LELLRSNTVPRDRRLVLLDLNMPKMNGIEFLRELRKDPVLRSTPVVVLTTSDDDRDKV
                     QAYDLNVAGYLLKPVTFINFVDVMAALNKYWALVELPEAR"
     gene            8841..>9404
                     /locus_tag="VLI40_03780"
     CDS             8841..>9404
                     /locus_tag="VLI40_03780"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU96321.1"
                     /translation="MSGRPLSILLVDDDEVDRLALRRALGKADLGELTLVEAERARDA
                     FTQITNESFDCAFFDFRLPDRDGVALLRNVRAAGVRTPVIVLTGFGDEQTVLDAMKAG
                     ATDYVAKSAVSPERIGQVVRSAVRLAEAEREADAARAAHERYANQLLGLADAAIAVNR
                     AESVRDLLDAAAMHACLITGAPVARVTL"
BASE COUNT         1883 a         2772 c         2928 g         1821 t
ORIGIN      
        1 attcggatcg gtggcgtgcg cacggagcca cggcggcgtg acgagtatct ccggcccgga
       61 tgccgggctg ctggccgggg cgatcgctga cagcgatgcg agtagcagaa atcgaatcat
      121 gataggctat gtgtgtggtg attggtgtat cgccgtcaat gatccggggc ggattggcgc
      181 ctcgcaatta caaatgcgac gaacaacgcg gagaaaccga tgaacgacgc tcccccggga
      241 caggagtgtt cgggaatctc cgggcaacca tcgcatgctt caatggggtc tgatctggtg
      301 taagcttcag ccttgccagg aacacacctc ccacatattg atgttgcatg cgtctcatag
      361 tcgtagaaga tgaaccgatt gcacgcgatg gcctctgcgc tctgcttgca gccgagcaat
      421 cggtcgaggt agtgggctcg ttcgcgagcg cagaagccgc gcgccgtggc gtgcgcagcg
      481 ctctgcccga cggaatgttc gtcgacgtcg agatgcccgg tgagggaggc atggacttcg
      541 tgcgctccat acctgccatc tcgcgtccgc acgtcgtatt cgtgaccgcg cacgagaact
      601 acgcggctaa agcgttcgag gtcgaggcgg tcgactatgt tctcaagccg atagatgaac
      661 gaagactcgc cgaagcggtc gagcgcgttc gaagagcgat cgagatagac gcaaacgccc
      721 gcatgcatgc acgcctcaag ggcgtgctcg cggacggcct ctccggtgat gacgatcatc
      781 tcgcacgaat ctccgcccgt gtcggcgaca ggctcgtcgt cgtgaagctg tctgacgtat
      841 cgtggatcga ggcggacggt gattacatgc gcgtgcattc gaagtgtcat gcgctgctcg
      901 tacgcatgac catgcgagag ctggagcgcc gtctcgatcc ttccatgttc gtgagagcgc
      961 atcggtcggc gctcgtgaac atcgacttca tcaccagcgt ggagctgctt ccgcacggcg
     1021 agcacgtcgc catgttgagt gacggtgccc gcgttcgcgt aggcagaacc tacagatccg
     1081 gcctgttcga ggcgctggga gaacggacgt gaaaatccag cgctccgcaa tcaccgctgc
     1141 agtcttctcg ttctccatcg ccacggtcct cggtatcatc ggcagtgcgc atcatcacgc
     1201 catgatgatc gcggaaggaa gtccgatgcc gtggcggcac gcagcggtga tggagatgcc
     1261 gttctggtat gccgcggcaa tactgactcc cgcactggtg tggatgttgc gccgctttcc
     1321 tgaccgcacg catggtgcgg cgagagcggt gcagcacgta gccatagcgc tggtctgggt
     1381 cacattgcag acagcgctcg agatgggagc gcgcacgatg ctcgggaccg gtctcagcgg
     1441 gcccgttcca acgctcattc aactgatcgt cagctcgctc acggatggat ttacgggcag
     1501 gctgctcata tacggcgaga tcgttggcgt gatctacgcg ttcacttact acgatcggta
     1561 tcgcgagcgc gagctcgcag ccgcgcagct ggagacgcaa ctggcggagg cacgactgcg
     1621 catgttgcgc atgcagctca atccgcactt tctattcaat tcgatgaata ccgtcgcaat
     1681 gctcgtcaga gctgggcgat cgtcggaatc ggtgaagatg ttgctcgcat tgagcacact
     1741 gatgcgcgat gcactccgcg atgatgcgcc cgatagcggc ccgctggaag atgagctgag
     1801 tcttctgaac cgctatgtag gcgtcgagca ggtacgcttc ggaggaaggc tcgcgttcga
     1861 cgtggacgtt cccgatccac tcaggagtgc aaccgttccc agctttctgc tgcagccgct
     1921 tgtggagaac gcgatccggc acggtcgcgc tacttcggac ggtgctgcaa tgataggcgt
     1981 tcgtgctgag cgcgtcgacg acaggctcgt gctatcggta tgggacgacg gagcgcggat
     2041 cgcggctcca gccaacaatt ccaacaacaa ttccaactac gatttcaact acgagtctcg
     2101 cggcgtcggc cttcggaacg tgcgcgatcg gctgctgcag ttatacggct cggcgcagtc
     2161 gttcgagatc gggcgggcgg acagccgtac cattgcgacg atcacgattc cgattcagtt
     2221 cgcggctgcg gtgagctgac aggcaggcgg cgcgggacga accaaaccgg cgaatagaag
     2281 atttgcgggc gctatcgagc ccgagctgcc cgcgccgtgt cgctggtcaa tacgtcttcc
     2341 agttgtccat ccacgttcca cgccgcggta cgagcgcgtg agtacctgcc agcgctttct
     2401 ttacttcgca ggagttatac acgatcgttt tcgttccatt tccgatcgac ccggccgcaa
     2461 ccgccggcga tccggtcacc agattgagac cactgatgac gctaccttcg atgttgtcat
     2521 ttccgttcgc tgttaccgtt ccgccaacga ggaccattcc gttccacgtg gtcaggccgt
     2581 tcattgtcat gtcgccgctg acaaccagca ggccgcggcc gctcggaagc atcggcacat
     2641 caccgttcac gtacacgatt ggatagtacg ttgtatcgct gaagcttgga aacgaaccgc
     2701 cgtggtcgga agtccgccac acgttgggca gattgagccc ctgcgaccag tcggcccaat
     2761 cgattccgag gccggccacg tacgcggcag ccgtttgcgg tgttggaccg agtgtcgtgt
     2821 tgtcgagtgg cgggtttcct gaaagtgggg atgtcgagcc ggtgtaccct ggtgatccag
     2881 gaaccatgac tcctgccaga ttgccgccgg gcaggcatgg cgtcggtgag tcgtctattc
     2941 ctgaaagcgt tccggaagct ccgttcttgt cgagtccgct gagactcatc cagcctgcct
     3001 ttactggcag cgtcgcgccg gtccaggtca cgatctccgc gaccgcccgc tgtgcggctg
     3061 gagttccggc gattcgtccg ccgccgtgac gtccgagcga gcttatcaca tacatcgtgt
     3121 cgctcgtcgc tacggtggaa gtgtggaaga ggcgcggaat gatgatcgcg gtgtcaccgg
     3181 ccgcgacgtt gaccggcacc cacgccgtgt cattgtcgtt cggcggcaaa tggacggtac
     3241 gtccgggccg gaaagctgga ttttcgggat ggcggagata tgcatccagt ccctgttgtg
     3301 caatcccgag agcgcgcgcc tgcagttgct ggtcatcgac ggcgcgacgc tcagtgctga
     3361 caagcgtcag gctggccatg acggcgacgg taattactcc gaccgctacg agcgccgtaa
     3421 tcagcgcgaa gccgcgacgg tcaggtacga cagaatctgg taagtcagga tggttggtca
     3481 cttgacaggc ctgttcttga agaagatcgc ggtcgtcatc ggtgcggatt ccggacgcga
     3541 tgcaccggcc acgatgtgat cgcttttcgc gttaagctgc agctcgatcc ctcgaaccgt
     3601 gttcagcgta acgcccgacg ccgaagcgct cttggtgcca gtgttgaggt agtacatgaa
     3661 ccgtgcgctc gtgtcgaatg gcgcggcaac ttcctcggag ccgtgtgtcc cattgactac
     3721 ggtccggaac aggccgcgcg cacctggcac ggaggtggag gcacgaaatg cgtatgtgat
     3781 gcgccgaacc agcatcgccg cctggtactg agcctgcgtc ggcgcgacgg gctgaacagc
     3841 aacggcgccc gcccggaaaa tacgcactgc atccttcgac gtattgcatg gtgccgagga
     3901 cgcgacggaa ccggagtcga gcgtgacggg cgatacgcca ctgaacttgt actgatatac
     3961 ctgacggaac gcagtcccgg tggtggtagt atcgatgtat gcgtatcccg agtaaccgcc
     4021 ttcggcatac gcgacactat cgtagggcag cagtgcgatc actgtggcgc cggatccact
     4081 cgtgctcgtg ccgcacacga ttccctcggc atagggcgcg gtgacggtga acgagtccgg
     4141 tgtcgccaca acgataccgc tgtctgcatc caccattcga acatcggaga gcagaaggtt
     4201 cagactggcg cgtgatatgt agcgtgcctg gtttgcagtc ccctgggcgt ccgcgaaacg
     4261 tacctggctc cggattatct gcgtcagtga tgtcgaaacg agcgcgagca gcaccagcgc
     4321 gatcatgagc tcgatgagcg tcacgccacg acgaagtgga ttaagaagtg gattaagcgg
     4381 acgaagtgga agcgttgatt tcatgtttgc cttccgtcag cgggtacgaa gtaccgtttg
     4441 cgtgacgctg tcggggcgct gcgacggact gagtggaagg atggcgacgc caacggtaag
     4501 tgaatcggcg cggccactga ttgtcactct acgcgcataa gtccatggat tggccacgac
     4561 gggcgtatcc aaccgtgtct gtccgatctg gacggcgaga ctctcgatcg gcgctgcaac
     4621 cgcgcgatct atttcctgcg tcagcagtcc ggtcgcgaaa gagcgacccg aaatccggcg
     4681 accctggcgc gcagctgcaa gggcgaccga tgtcagggat gtcacggcga tggtgagcat
     4741 cacgagcgct atcagcactt cgaggatgga gaatcctgcg cggcggcgac tcatctggtg
     4801 ctgttcgcgg cgtgcgctca tggaagtacc ctgaccgcgc cgacacgaga aacggccacg
     4861 cggcgaagat atgttgccgc atcaccgatg acgatcgtgt cggaagatgt cgcaatcccg
     4921 ctggggaata tgtcgagcga cgtgaccgat cccgcgagag cggaaacgtt caggtcgcca
     4981 gagctcaggt tacgctgtat gatggtgtcg cccgttacgc gatttgtgat tgcatagcgt
     5041 cggctcgcga aaatgaagct gacacgaacc ggaactctgc cgcgggcggc tgaggtaaag
     5101 gccgcgcgaa tatcggacgc gacgatctgg ctcgtgcgat tgactctttg ctggcgcatt
     5161 atgacgctca tgcgtggcgc agccatggcg gtcgtgattg cgagaatcga cagcgcaatc
     5221 agcatctcga tgagcgtgaa tccgcgtcga tgacgggccg ggctccggcc cggagcaatt
     5281 gctcgcggtt ccgagcggga tagatgcctt gggcatctgt ctgttgacgt aaggagcttt
     5341 ggcattatgt ggttactagt atcgccgcat gtaccggatc tccttagtaa cgaacgaagc
     5401 ccatgttggt cacccgccag atgtttattc gggccggagc gggcggtccg tggtcgttga
     5461 tggtctcgcc ggagtcgaca cggcgggaac gacggagata gggctatttg aatggaaccg
     5521 gagagccgca ccggtcactg cgtacctact ataaaagagg caccggtcgg aatcgaaccg
     5581 acgaatagga gatttgcagt ctcccgcctt accacttggc cacggtgccg tttactgcct
     5641 gacggtcagt ttccaaacct aaccgcctcc tcgcttcgtt cccaccccac gaggcgccgt
     5701 tattcgccca ctagctggtc catgagctgg cgcagcattg ccaggttcag cgcgtgccca
     5761 ccgctgaagg gatgcatcgc gtatggtacc ccactgctct cgagaacagc cctctgctct
     5821 tccactgcgt cttcgccgat gaaccggtcc cgcgttccgt acaccatgtc gatggtcaag
     5881 cgcggccttc gttcggcgag tgcccgcagg ttgacgtcct ggggaattgc gtgggcccac
     5941 gggacgagat ggtcgattac cgccgagcca cgtgccgccc acctcgaagc cgccggaccg
     6001 ccctgcgaga agcccagggc gtgcacccga attcgatcgc gatccactcc gtggctcgcc
     6061 aactcctcca gtagccgctc atacagcctc tccagatagt tgactatgtc aattatctct
     6121 acttccctgt cttcgcgagt cagccatagc gccccgacct tgctggcgcc cgagtggccg
     6181 ggtctcgtat cgaggtaaaa tttggacaga ccctcgggaa ccacgatcag cctcgaatcc
     6241 gcttccagcg gctgaaacgg gacggcgaaa tcagccgcca gctggctgaa gccgtgcaga
     6301 actacccaga cgtcccgaac gagagggttc ggagcgccga tctggtagta gcgggcggtc
     6361 tttacgaccg gtaaatgaat gggtgtaagc ggttgcatct gcagttggtc ggttaggccc
     6421 aattatagcg ttattgccat cccggatggc gccaagccgg catcgactgg atgaggcacc
     6481 agccagcggg taattctgtc tcccgccaat tctactcaat cctacgtgtc gcttcggctc
     6541 aagctcacag ctgcccttgg ggtggcactc gtaattctgc tcgtaggcgt tgcatcgctc
     6601 tatgcactga ggcaatcgac caatgccgca gccgcggtcg agcattcgga gatggtccgc
     6661 gtgcaactcg agcgcgctct cacaacgata gttaatgccg agacaggcca gcgcggctac
     6721 ctcatcactc aggacacgag ctacctcact ccatacgcat ccgcgcgcac ggacctggac
     6781 cgcgagattg catcgatccg cgcacttacc tcagacagtc cacttcagca gagtcgcatc
     6841 gattcactgg cgctcatagc cgatgcaaag cttgtcacga tgaacgaaac ggtagtgctg
     6901 acgcaatcgg gcaaccgtga ttcggcgctc aagatcgtca tgacgggacg cggcgccgag
     6961 ctgacgcgcg aggcgcgcaa tactatcgat gacatggagg cgacgcaggc ggaacagctt
     7021 gccgagcgca tcaacatcta caacagccga aagctggctg taacgctggt gacggtcgtt
     7081 ggcagcctgc tcggcgcgac actctcgatt ctcacgatgc tgtggctgcg aagcggggta
     7141 aggcaactcg aagaggccaa ggacacgatc gaggaacaat cggccgagct ggcggacgag
     7201 ctggcgacat cgcactccct ggccgacaaa ctcgcggcaa gcaacaacga gctgcaacgg
     7261 gccaacgtcg ccaccgaaag cgcgcgcgga cgcttcgagc aactgttgca gtccacggac
     7321 gaggcaattt tcggaataga cgccgacggc ctctgcacct tcatcaacgc atccggcgcg
     7381 cgactgctcg gctacgagcg caacgagctg ctcggccgga acatgcacga agtgtcgcac
     7441 catcaccgag ccgacggaac tccgtacccg atcgagcaat gtccgataca caaggcgatg
     7501 ctcgacggta cgtcgattcg aattgccgat gaagtgttct ggactcacac cggccgcgcg
     7561 ttgcccgtcg agtacacatc ttcgcccatc gcaagcaatg gacgaacggt tggagcagtg
     7621 atcgccttca acgacatcac tgcgcggaga aacgcggaac gtgagcgcga gcgcctcatc
     7681 gcagcgcttg cccgcagcaa ccaggagctc gatcagttcg catatgtagc atcgcacgac
     7741 ctcaaggcgc ctctacgcgg catcgcgaac ctgtcgcaat ggatcgagga agatctcggc
     7801 gacaacgtac cgccggacgt ctcggagaag atgacactcg tacgcgggcg cgttcagcgg
     7861 ctggaagcgc tgatcgatgg aatcctgcaa tattcccggg ccggccgcat gcgttcggga
     7921 gtcgaggatg tcgacgtgga actactcctg aaggatgtgg tcgagctgtt ggcgccgccg
     7981 ccggaagttg tcgttaccat cgagccggga atgccaacga tcaggaccga gcgtacacca
     8041 cttcaacagg tgttcatgaa tctcataaac aacgcaatca aatacaacag acatccgggt
     8101 gcccggatca cggtgtcgtc acgtgatgcc ggcaacatgt atgcattcag tgtcacggac
     8161 aacggtcctg gcatcgagcc ggagtatcat gagcgcatct tcggaatctt ccagacgctg
     8221 gaatcgcgcg accgggtcga gggtactggc ataggactgt cggtcgtaaa gaaaactgtc
     8281 gagctgcacg gtggatcgat ctccgtgcgt tcagcgctcg gcgagggagc tacattcacc
     8341 ttcgaatggc ccaagagcac cgaggagaaa acggcagcat gagtatcgag cgaacgctga
     8401 acctgatcct cgtcgaagac gacgagatcg atgtgatgaa cgtccggcgg gcactggagc
     8461 gtgcgcatgt ggcgaatccc gttttcgtgg cgcacaacgg actggagggt ctggagctgc
     8521 ttcgcagcaa cacggtgccc agggatcgac gcctcgtgct gctcgatctc aacatgccga
     8581 agatgaacgg aatcgaattc cttcgcgaac tgaggaagga tcccgtcctg cgctcgacgc
     8641 ctgtcgtggt attgacgacg tcggacgacg accgtgacaa ggtacaggcc tacgatctga
     8701 atgtcgcggg atatcttctc aagcctgtga cattcatcaa cttcgtggac gtgatggccg
     8761 cactcaacaa gtactgggcg ctggtcgagc tgcccgaggc gcgttgaaac gtcacggatg
     8821 atcgggcgca tgagacagcc gtgagcggac gaccgctatc gatactgctc gtcgacgatg
     8881 acgaggtgga caggctcgct cttcgccgcg cgctcggcaa ggcggacctc ggtgagctca
     8941 cgctcgtaga agctgagcgc gcgcgcgatg cattcacgca gatcacgaac gagtcgttcg
     9001 attgcgcgtt cttcgacttc cggctgccgg atcgcgatgg cgttgcgctg ttgcgcaatg
     9061 ttcgcgcagc gggcgtgcgt actccggtga tcgtgctgac cgggttcggc gacgagcaga
     9121 cggtcctgga tgcaatgaag gctggcgcaa ccgattacgt cgccaagtca gccgtttcgc
     9181 cagaacgtat cggacaggtg gtacgctcgg ccgtacgact tgccgaagct gagcgagagg
     9241 cggacgccgc ccgcgcggcg cacgagcgct atgcgaatca gttgctcggg ctggctgatg
     9301 cggcgattgc ggtcaatcga gcagagagcg ttcgtgacct gctcgacgca gccgccatgc
     9361 acgcgtgcct catcaccggc gcaccagtcg cacgcgtcac actc
//
LOCUS       DATIMD010000166         4700 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4972855, whole genome shotgun sequence.
ACCESSION   DATIMD010000166 DATIMD010000000
VERSION     DATIMD010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4700
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4972855"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(171..422)
                     /locus_tag="VLI40_03785"
     CDS             complement(171..422)
                     /locus_tag="VLI40_03785"
                     /inference="COORDINATES: protein motif:HMM:NF020967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HSU96322.1"
                     /translation="MTTDKDNNENDIVVIRTFADAISAHIAQAALDANDIRSIIVGDD
                     AGGAYPALTFSNGVRLAVQHSDAMKALRLLDAETETETE"
     gene            complement(422..1402)
                     /gene="murB"
                     /locus_tag="VLI40_03790"
     CDS             complement(422..1402)
                     /gene="murB"
                     /locus_tag="VLI40_03790"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HSU96323.1"
                     /translation="MTRLDYMTSNGGASTERYAYEDLATQLDSSRLVRNEPIAPYTTF
                     RIGGPADLFYSADSADDLAEAITAARRTGVPFFVLGLGANILVGDRGFRGLVIRNRAR
                     SFEFRDDGRLYAESGVVMAELIPQAVERGWSGLEHYVGIPSTVGGAVWQNLHFLSPAP
                     ERDRTMFIAEVVDSCDILSADGERRTVDREYLQFGYDDSIFHHRADYALAVTFQLEKC
                     DPAVMHRIIQENLSWRGARHPWLQFHPSAGSIFRKIEGVGAGRLIDQLGMKGHRIGGA
                     QISHIHANIMVNLGGATARDVRELIALAQQRVKDELGHELTPEIAFIGEF"
     gene            1449..2987
                     /locus_tag="VLI40_03795"
     CDS             1449..2987
                     /locus_tag="VLI40_03795"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSU96324.1"
                     /translation="MSGRLTVRFTGRLMSRAAALFTIPVAATMFLSVPASGQIAQEKV
                     DLGAVARIRDEGLQRSRIPELARHLTDVIGPRLTGSPGMKAANEWTATMLKSWGLTGV
                     EVEPWGRFGRGWENVSYEGRILTPYSQAMPGQASAWTGSTKGTITAPVLVVDGGADGI
                     ARYGDKLRGALVLLAPPRALPPEFRDAEERRTPVDSLFAAVNQRARAPIGWDTLLVKI
                     QKQQAHGDSLLRAAGVAGVITGSGSAYGTIRGGGDWSATNPAMLIPVPNVIIPQEQYN
                     EMYRNVTNGVPVKVQLDVQNRFLTDDLNAYNTLGDIRGTDKPDEYVMIGAHLDSWHYG
                     NGATDNAAGTVVMMEAMRILKTLDLHPRRTIKIALWSGEEEGIYGSRGWIRKHPEMAP
                     KISAYLNLDNGTGKIRGIWDQSNAKAIPIFEQILWPFRDLGVVAVRHGNTGSTDHVSF
                     DDAGIPGFNFIQDPIEYGLRTHHSSNDVYDHLELDDLKQAAVVVAATAYELANRDEMF
                     PRKK"
     gene            2993..4405
                     /locus_tag="VLI40_03800"
     CDS             2993..4405
                     /locus_tag="VLI40_03800"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSU96325.1"
                     /translation="MKVRPHKRARALLAFVAGACLLPATVPATLPAQRAALDKIIQRR
                     VLPNGLEVIVVENHGVPLATVEVNVRNGSFTQTPEYAGLAHMYEHMFFRANQQYPESE
                     MYLDRAAQLGAVFNGTTQEETVSYYLTVPADSVRGAIQWLTPALRAPLFLESELAVER
                     QVVIGEYDRNESSPFFQLQRQMDMKLYPGNYSRKNVIGDRQVVATTTPEKMRYIQHKY
                     YIPNNSVLIVAGDVKPDSIFAIATRQLGSWARGPDPFVTDPIPDIPPLTASDAVVAEA
                     PVNAVTVLLQWQGPSVGKDPKSTYAADVFSDLLNDPRSRFQQRLVDSGLWQGVTVNYY
                     TLNHTGPITISGQTSPEKLRPALAALDSEIRKLDDPTYFDPDELKAVQAHRAVTSAFG
                     REQASAFAHTLGFWWSVASLEYYMGYVDNMARQSTADLRAYADKYIVGKPRITGVLIS
                     PEGRQQIHLTADELKAGGMK"
     gene            4405..>4700
                     /locus_tag="VLI40_03805"
     CDS             4405..>4700
                     /locus_tag="VLI40_03805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96326.1"
                     /translation="MLRRIMFFAVALCVGAGSVSAQTEADTLTSSFSVDGIPVILRRN
                     TSNNVVVANVYLLGGVRQVTRATSGIEPFLLAVSERGTQHYPKAVLRSKTSALG"
BASE COUNT          976 a         1334 c         1471 g          919 t
ORIGIN      
        1 cggtctttgg atcggtcttt ttcgagtaca gacgatactc gcccgatttg agcttgcgga
       61 tcatgattcc tcctttctgg aggtaaaaat cgcaaggatc agtccagtga aagaagggcg
      121 tgcgaagagg tcctcgtcgt actgtcggca gacacggggc ctgcccgtac tcactccgtc
      181 tccgtctccg tctccgcatc gagcagccgg agcgctttca ttgcatccga atgctggacg
      241 gcgagtcgta cgccgttcga aaacgtcagc gcgggatagg cgccgcctgc gtcgtcgcct
      301 acgatgatgg agcggatgtc gttcgcgtcg agtgcagcct gagcgatgtg cgcagaaatg
      361 gcgtctgcga acgtacggat caccacgatg tcgttctcgt tgttgtcctt atcggtcgtc
      421 atcagaattc gcctatgaat gcgatctcag gggtgagctc atggccgagc tcgtccttca
      481 cacgttgctg cgccagcgcg atgagctcgc gcacatcgcg tgcggttgcc ccgcccaggt
      541 tcaccatgat gttcgcgtga atgtgcgaga tctgagcacc tcctatacga tgtcccttca
      601 tgccgagctg atctatgaga cgtcctgcac caacgccttc gatctttcgg aagatggagc
      661 ccgccgacgg atggaactgc agccagggat gtctggcgcc tcgccagctg agattttcct
      721 ggatgattcg gtgcatcacg gcgggatcgc acttctcgag ctggaacgtc acggcgagag
      781 cgtaatccgc acggtgatgg aatatcgagt cgtcgtatcc gaactgtaga tattccctgt
      841 ctacagtacg ccgctcaccg tcggcgctca ggatgtcgca cgagtccacg acttcggcga
      901 tgaacatcgt tcggtcgcgc tcgggagcgg gactgaggaa gtgcagattc tgccacaccg
      961 cgccaccaac ggtactggga attccaacgt agtgttcaag gccggaccat ccgcgctcga
     1021 ctgcttgcgg aatgagctcg gccatgacga cgccactttc tgcgtagagg cggccgtcgt
     1081 cgcggaactc gaagctgcgg gcgcgatttc ggatgacgag cccgcgaaat ccccgatctc
     1141 caaccagaat gttcgcgccc aacccgagca cgaagaacgg aacgcctgtg cgccgagccg
     1201 cagttattgc ctctgccaga tcatcggccg aatcagcgga atagaagaga tccgcgggac
     1261 caccgattcg aaacgtcgtg tatggcgcaa tgggctcgtt tcggacaagc cgcgacgagt
     1321 cgagctgcgt cgccagatct tcgtacgcgt acctttccgt cgacgcgccg ccattgctcg
     1381 tcatgtaatc gagccgagtc atagtttatg gtgcgatcgc atagccaatc aaatataggg
     1441 attcatcgat gtcaggacgt ttgacagtac gtttcacagg tcgtctcatg tcgcgcgccg
     1501 ccgcgctgtt cacgattcca gttgcagcta cgatgtttct gtccgttccg gcgagcggac
     1561 agatcgcaca ggagaaggtc gatctcggtg cagtggcgcg catacgtgac gaaggccttc
     1621 agcggtcccg gataccggaa cttgcgcgcc atttaacgga tgtcatagga ccccggctca
     1681 ccggctcacc gggtatgaag gcggcgaacg agtggactgc aacaatgttg aagtcgtggg
     1741 ggctgacggg agtcgaggtc gagccatggg ggcgcttcgg gcgcggctgg gagaacgttt
     1801 cgtacgaggg acgcatcctc actccataca gtcaggcgat gccaggtcag gcgagcgcgt
     1861 ggaccggaag caccaagggg accataacgg cgccggtgct cgtggtggat ggcggggcgg
     1921 atggcatagc cagatatggc gacaagctcc gcggcgcact ggtattgctc gcgccgccgc
     1981 gcgcgttgcc gcccgagttt cgtgatgccg aagagcgtcg tacgccggtc gactcgctat
     2041 tcgcagccgt caaccaacgt gcgcgcgcgc cgatcgggtg ggacactctg ctggtaaaga
     2101 ttcagaaaca gcaggctcac ggagactcgc tgctacgagc ggcaggcgtg gctggtgtga
     2161 ttactggttc gggaagtgca tatggcacga tacgcggcgg cggcgactgg tccgcgacca
     2221 atccggccat gctgattccg gtgccgaacg tcatcatccc gcaggagcaa tacaacgaga
     2281 tgtatcgcaa tgtgacgaac ggcgtgcccg tgaaggtgca actcgacgtc cagaacaggt
     2341 tcctgacgga cgatctgaac gcatacaaca cgctcggtga catccgcgga actgacaagc
     2401 cggacgagta tgtaatgatt ggcgcgcatc tcgattcctg gcattacggg aacggtgcga
     2461 ccgacaatgc ggcaggcacc gtggtgatga tggaagcgat gcgcatcctc aagacgctcg
     2521 atcttcatcc caggcgtacc atcaagatcg ctctgtggag cggcgaggaa gaagggattt
     2581 atggatcgcg cgggtggatc cggaagcatc ccgagatggc gccgaagatt tcggcgtacc
     2641 tcaacctcga caacggtacc ggcaagatcc gtggcatctg ggaccagtcg aacgcgaagg
     2701 cgatcccgat cttcgagcag atcctgtggc cgtttcgcga cctcggtgtg gtggcggtcc
     2761 gccacggaaa tacgggaagc acggatcacg tttcgttcga tgacgccggg atccccggct
     2821 tcaacttcat ccaggatcca atcgagtatg gactccggac gcaccatagc tcgaatgatg
     2881 tgtatgacca tctcgagctc gacgatctga agcaggccgc agtggtggtt gccgcgaccg
     2941 catacgagct cgccaacagg gatgagatgt ttccacgcaa gaagtgagga agatgaaagt
     3001 tcgaccgcat aagagggcgc gggcgttact ggcgttcgtt gccggcgcgt gtttgctgcc
     3061 ggcaacggtg ccggcaactc tgccagcaca gcgcgccgca ctcgacaaga tcattcagcg
     3121 acgcgtgttg ccaaacggtc tcgaagtgat agtcgtggag aaccacggag tcccgctcgc
     3181 tacggtcgag gtgaacgtgc ggaacggctc attcacccag acgccggaat acgcaggtct
     3241 ggcgcacatg tacgagcaca tgttcttccg ggcgaaccag cagtacccgg agagcgagat
     3301 gtatctggac cgtgccgcac agctgggcgc cgtgttcaac ggcacgacgc aggaagagac
     3361 agtgagctac tatctcacag tgccggcgga ttcggttcgc ggagcgatcc agtggctcac
     3421 acccgcgttg cgcgcgcctc tgttcctcga gagcgagctg gcggtcgaac ggcaggttgt
     3481 gatcggcgag tacgaccgca acgagtccag tccgtttttt cagttacagc gacagatgga
     3541 catgaagctg tatcccggca actactcgcg gaagaacgtg attggtgatc gtcaggtagt
     3601 agcgacgacc acgccggaga agatgcggta tatccagcac aagtactaca tccccaacaa
     3661 ctcggtattg atagttgccg gcgacgtgaa gccggacagc atctttgcca tcgcgacgcg
     3721 ccagcttggc agctgggcac gcggtccgga tccgttcgtg accgacccca ttccggacat
     3781 tccgccactc acagcgagcg atgctgtcgt tgccgaggct ccggtgaatg cggtgactgt
     3841 gctattgcaa tggcaggggc cgagcgttgg taaggatccc aaatccacgt atgcagctga
     3901 cgtgttctcg gatcttctga acgacccgcg gtcgcgcttt cagcagcgac ttgtggacag
     3961 cggtctgtgg cagggtgtga ccgtcaatta ttacacgctc aatcatacag ggccgatcac
     4021 gataagcggg cagacgtctc ccgagaagtt gcgtcccgcg cttgcggcac tggattcgga
     4081 gatcaggaag ctggatgatc cgacgtactt cgatccggac gaattgaagg ccgtccaggc
     4141 gcatcgtgcg gtaacgtcgg cattcggcag ggagcaggca tcggcgttcg cgcacacgct
     4201 cggattctgg tggagtgtcg cgagtctcga gtactacatg ggctacgtcg ataacatggc
     4261 gcgtcagagc accgcagatc tgcgtgcata cgccgacaag tacatagtgg gaaagccgcg
     4321 catcaccggt gttctcatct cacccgaagg gcggcagcag attcacctga ccgctgacga
     4381 gctcaaagcg ggagggatga agtgatgctg cgcagaatca tgtttttcgc ggtggcacta
     4441 tgcgtgggcg ctggaagcgt cagcgctcaa accgaggcag acaccctcac atcgagcttt
     4501 tcagtcgatg gcattccggt gatcctgcgt cgcaatacgt cgaacaatgt agtggtcgcg
     4561 aacgtttacc tgctgggcgg tgtgcgccag gtgacgcgag ctacaagcgg gatcgagcca
     4621 tttctactgg ccgtatccga gcgtggcacg cagcactatc caaaggccgt gcttcgaagc
     4681 aagacatcgg cgctgggaag
//
LOCUS       DATIMD010000167         3354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4104213, whole genome shotgun sequence.
ACCESSION   DATIMD010000167 DATIMD010000000
VERSION     DATIMD010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3354
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4104213"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..754)
                     /gene="gnd"
                     /locus_tag="VLI40_03810"
     CDS             complement(<1..754)
                     /gene="gnd"
                     /locus_tag="VLI40_03810"
                     /inference="COORDINATES: protein motif:HMM:TIGR00872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating 6-phosphogluconate
                     dehydrogenase"
                     /protein_id="HSU96327.1"
                     /translation="MQLAMIGLGKMGGAMTERLIRGGHSVVTYDRSPDAVQHTVTLGA
                     TASSGIADLTSKLSAPRVVWVMVPAGKPTDDTINELAQHLERGDVIIDGGNSNFHDTM
                     RRNAELSQKGIEFVDAGTSGGVWGLKEGYCEMVGASDATFKLCEPLFKTLAPPNGYAH
                     VGPTGAGHYVKMVHNGIEYGMLQAYAEGYEILHASSEFKLDLAQISALWNQGSVVRSW
                     LNELAAQAFARDGDLTDLKGYVEDSGEGRWTVQ"
     gene            complement(787..1404)
                     /locus_tag="VLI40_03815"
     CDS             complement(787..1404)
                     /locus_tag="VLI40_03815"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HSU96328.1"
                     /translation="MSDAAIDLILCDVGGVLGSNGWDHNERALAAKHFNLELQPFERR
                     HEEAVDTLECGRMTLDEYLDFTVFNENRPFTREEFRDFMYAQSIPNRAALDLMTALAS
                     RHRWRMMTLNNESSELNEFRVKLFGLRPIFDAFLTSAYVGAQKPHATFYDRTLAIAHA
                     DPAHTVFIDDREENLAPVRERGVHCIHATDTNAVRDGLAVLGVRA"
     gene            complement(1401..2048)
                     /locus_tag="VLI40_03820"
     CDS             complement(1401..2048)
                     /locus_tag="VLI40_03820"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HSU96329.1"
                     /translation="MTKIYDVSVPIRDGGLVYPGNPEIHISLQQSLALGAGANVSNVS
                     FGSHTGTHVDAEHHFFEQGKGVDQIPLETLMGPAIVLEYGPDTAAVTRADLERQDLAG
                     AERVLLKTRNSTYLTQDPTFHKDYTYLAPDGAEYLVGLGVKLVGIDYLSIEQFHSGHH
                     RTHLTLLGAHVVIVEGLNLIDVPAGRYDFYCLPIRLAGCDGAPARAVLVSDGART"
     gene            2115..2807
                     /locus_tag="VLI40_03825"
     CDS             2115..2807
                     /locus_tag="VLI40_03825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="FG-GAP repeat protein"
                     /protein_id="HSU96330.1"
                     /translation="MPQIAIAMCLVSGTMPGVAQAQRRDLREEPRPAIYRSPNGIWLL
                     DLPPAMEDALDRYNRDFEPWTQQDYRGLPDYEPSPRQVPWAVIGDFNGDGRADLAIAG
                     RTDRDVVVVFVLSSGRTKYHAFDADREPYDPDDRLSIRLPQLTYMYPGRYVVADPRLN
                     YPRQLIVDQPAVQITGGRRQGAVIYVVENNAVVPYYLSDRTAAPAPAGARTGKQPRPA
                     PIRPTKGSSGNP"
     gene            complement(2779..>3354)
                     /gene="apaG"
                     /locus_tag="VLI40_03830"
     CDS             complement(2779..>3354)
                     /gene="apaG"
                     /locus_tag="VLI40_03830"
                     /inference="COORDINATES: protein motif:HMM:NF003967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HSU96331.1"
                     /translation="LQDWHANGTASRGSRLDLVAPGRRAGTPIVTPELVAATSAGSFS
                     TRFTCRNASVTTPFFYRMSSGIRITVRPVYLRDQSDPAAQHYVFAYFVRVENVGDRPA
                     QLLSRRWLIHDEIGEDTEVVGDGVVGEQPLIPPGRVHEYQSFCVLKSGEGYMEGQYFF
                     VRATGDDDGETFTADIPRFILSATGSPSFPS"
BASE COUNT          626 a         1062 c         1019 g          647 t
ORIGIN      
        1 cctgcaccgt ccagcgtccc tcgccactgt cttccacgta ccccttgaga tcggtaagat
       61 cgccgtcgcg cgcgaacgcc tgcgcggcca gctcgttcag ccatgagcga accacggagc
      121 cctgattcca cagggccgag atctgcgcga ggtcgagctt gaactcgctc gatgcatgca
      181 gaatctcgta tccttccgcg tacgcctgca acatgccgta ctcgattcca ttgtggacca
      241 tctttacata atgtcccgca ccagtgggac cgacgtgggc atagccgttc ggcggcgcga
      301 gcgtcttgaa gagcggctca cacaatttga aggtggcatc ggacgcgcca accatttcgc
      361 agtagccttc cttgaggccc cacacgccgc cactggtgcc cgcgtcgacg aactcgatcc
      421 ccttctggct cagttcggcg ttgcgccgca tcgtgtcgtg aaaattcgag tttccgccgt
      481 cgattatgac gtcgccgcgc tccagatgct gtgccagctc gttgatggtg tcgtcggtgg
      541 gcttgccggc ggggaccatt acccacacga cacgcggagc cgagagcttc gaggtgagat
      601 cggcgatgcc gctcgaggct gtcgcaccca gcgtgacagt gtgctgcaca gcgtccggac
      661 tgcgatcata tgtaacgacg gagtgtccgc cgcgaatgag gcgctcggtc atggcgccgc
      721 ccatcttgcc gagtccgatc attgctagtt gcatgtttgt cttgtgtggt gagagacagt
      781 aatggttcag gcgcgcacgc ccagcaccgc caggccgtca cgtaccgcgt tggtatccgt
      841 cgcgtgaatg cagtgtacgc cgcgctcgcg caccggcgca aggttctcct ctcgatcgtc
      901 gatgaacacc gtgtgcgccg gatctgcgtg cgcgattgcg agcgtgcgat cgtagaatgt
      961 cgcgtggggc ttctgtgcac cgacgtacgc agacgtcaga aatgcgtcga aaatcggacg
     1021 caggccgaac agcttcaccc ggaattcgtt cagctccgat gattcgttgt tgagcgtcat
     1081 catacgccag cggtgcctgg acgcgagcgc cgtcatcaga tctagcgcgg cacggttcgg
     1141 aatgctctgc gcgtacatga aatccctgaa ctcttcgcgt gtgaacgggc ggttctcgtt
     1201 gaacaccgtg aagtcgagat attcatcgag tgtcattctt ccgcactcga gcgtatcgac
     1261 cgcttcctcg tgtcgtcgct cgaacggctg cagttcgaga ttgaagtgct ttgccgcgag
     1321 cgcccgctca ttgtgatccc atccgttcga tccaagcacg ccgccgacat cgcacaggat
     1381 gagatcgatc gccgcgtcac tcacgtacgg gcaccgtcac ttacgagcac cgcgcgcgcc
     1441 ggcgcaccgt cacagccggc gagcctgatc ggcagacagt agaagtcgta ccgtccggcg
     1501 ggaacgtcga tgagattgag tccttcgact attacgacgt gcgcgccgag cagggtgaga
     1561 tgggtgcgat ggtggcccga atgaaattgc tcgatcgaga gatagtcgat gcccacgagc
     1621 ttgaccccca gtccaacgag atactccgcg ccatccggcg cgagatacgt gtagtccttg
     1681 tggaacgtcg ggtcctgcgt gagataggtg gaattgcgtg tcttgagcag tacgcgctcc
     1741 gcaccggcaa ggtcctgccg ttccagatcg gcgcgcgtga ccgcagccgt atcggggccg
     1801 tattccagca cgattgcagg gcccatcaag gtttccagcg gaatctgatc gacccctttc
     1861 ccctgttcga aaaaatgatg ctccgcgtcg acgtgcgtac ccgtatgcga cccaaaggac
     1921 acgttcgata cgttggcgcc ggcgcccagt gcaagcgact gctgcagtga gatatggatc
     1981 tccggatttc cggggtacac caatcctccg tcccgaatcg ggacgctcac atcgtagatt
     2041 ttcgtcatac ccccgtgcta gcaactgtcg ttccgtgaat gatcatgccg agacttgaga
     2101 acatgcgtct atcgatgcca caaatcgcca tcgccatgtg cctcgtgtcc gggaccatgc
     2161 cgggcgtcgc gcaggctcag cgtcgtgacc tccgcgagga gcccaggccg gcgatctacc
     2221 ggtcgccaaa cggaatatgg ctcctcgatc tgccacccgc gatggaggac gcgctggacc
     2281 gctacaatcg cgacttcgag ccgtggactc agcaggatta tcgcggcctg ccggactacg
     2341 agccctcgcc acggcaggtt ccctgggcag tcattggcga cttcaacggt gatggacggg
     2401 ccgatctcgc cattgcggga cgcacggacc gggatgtggt cgtggtcttc gtgctgtcat
     2461 cggggcggac caagtaccat gcgttcgacg ccgaccggga gccttacgat ccggacgacc
     2521 ggctctcgat caggctgccg cagctcacct acatgtatcc ggggcgatat gtagtcgcag
     2581 atccgcggct caactatcca cgccagctga tcgtggacca gccggccgtt cagatcaccg
     2641 gtgggcggcg ccagggggcg gtgatctacg tagtcgagaa caacgcggtc gtcccctact
     2701 atctctcgga ccgaactgcc gcgccggcgc cagccggcgc ccggacgggc aaacagccgc
     2761 ggccggcgcc gatccgtcct acgaagggaa gctcggggaa cccgtagcgc tcaggatgaa
     2821 gcgcggaata tcggcggtga acgtctcgcc atcgtcatcg ccggtcgccc gaacgaagaa
     2881 gtactgcccc tccatatagc cctcgccgct cttgagcaca cagaagctct gatactcatg
     2941 cactcggccc ggcggaatca gcggctgctc gccaacgacg ccgtcgccga cgacctccgt
     3001 gtcctcaccg atctcgtcgt gaatcagcca acggcgtgag agcagctggg ccggcctgtc
     3061 gccgacgttt tccacacgca cgaaatacgc gaagacataa tgctgtgccg ctggatcgga
     3121 ctgatcccgc aagtacacgg ggcggactgt tatgcgaatg ccgctggaca tccggtagaa
     3181 gaacggggtg gtcacactgg cattcctgca ggtgaatcgg gtggaaaagc tccccgcgct
     3241 cgtcgcggcg acgagctcgg gggttacaat aggcgtgcct gccctgcgcc caggagctac
     3301 cagatcgaga cggcttccgc ggctggcagt gccattggcg tgccagtctt gcag
//
LOCUS       DATIMD010000168         3051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1796432, whole genome shotgun sequence.
ACCESSION   DATIMD010000168 DATIMD010000000
VERSION     DATIMD010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1796432"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1829)
                     /locus_tag="VLI40_03835"
     CDS             complement(<1..1829)
                     /locus_tag="VLI40_03835"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HSU96332.1"
                     /translation="MKSLVTVSLLVLTAAPGMAQVSSHPFNVHDLVMMDRVSDPQLSA
                     DGSSVTFTVRTTDYDANKGLTSVWLLELNKAGSTPRRLTEPAQNANNARFSPDGETIY
                     FLAAVSGVSQLWQMSSTGGDARQVTHLPVDIDNYRISPDGREVLFSAQVFAECETLAC
                     TAARLEAVKNDKATGRVYDRLFIRHWDAWSDGRRSQLFIMPIGATTEPLHLTRGIDGD
                     VPSRPFGDESEYSFSPDGKTVYFDVRIAGKTEPWSTNFDIYSVPADRSAAPKNLTAQN
                     LAWDATPVPSKDGRTLYYLAMKTPGFEADRFGIMALDLASGAKREIDPKWDRSPGGLT
                     LSDDGKTLYTTVDDEGMHALYAIDIASGAPRKLLSDGTVTGFAVAGDRIVAARQDFKH
                     PTDLYTLDARGAGLAQVTHFNADRLRDIRFGDAEFFSFKGEKGETVHGYVMKPVDYQP
                     GRKYPVAFMIHGGPQSAWNDDFHYRWNPETYAGAGFAVVAINPRGSTGYGQAFTNAVS
                     GDWGGAPLGDLKKGWAAALERYSFLNGNEACALGASYGGYMVYWMAGVWNKPWKCMVD
                     HDGVFDTRMMAYATDELWFEDHENGGTQYEHPANYEKFNPLDHV"
     gene            2179..2940
                     /locus_tag="VLI40_03840"
     CDS             2179..2940
                     /locus_tag="VLI40_03840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96333.1"
                     /translation="MTPALAGAQDRATQYVAPTNATVTTDLEEGFGSTPYQTIWIRNS
                     STVPIHVYSVTLRSCENVREDCSPFPLNLHVGPGRRVLLRRVDPHDANAGFSFRYTFG
                     WQADSSSVEALHLLADNGVAQARSLVAAQDAARAQQNAVVGVHDTDLGNADIVALGAQ
                     IATLRVDPDSVVLHPTQALLLNNVRVLAIDSHGAILGRVRAFQFRALAGAVVMHSDTV
                     VALRAGRTTAEFRLAPPATPLTVSLPIIVTADSVK"
BASE COUNT          569 a          940 c          922 g          620 t
ORIGIN      
        1 acgtgatcca gcggattgaa cttctcataa ttcgccgggt gttcgtattg cgtaccgccg
       61 ttctcgtgat cctcgaacca cagctcatcg gtcgcgtacg ccatcatgcg cgtgtcgaac
      121 acaccgtcgt ggtccaccat gcacttccac ggcttgttcc acacgccggc catccagtac
      181 accatgtagc cgccgtagct cgcaccgagc gcgcacgcct cgttgccatt caggaacgag
      241 taacgctcga gcgccgccgc ccaacctttc ttgagatcgc cgagcggtgc gccgccccag
      301 tcgcccgaca ccgcgttggt gaatgcctga ccgtagccgg tcgatccgcg cggattgatc
      361 gcgacgacgg cgaaacccgc gccagcgtac gtctcgggat tccagcggta gtgaaagtcg
      421 tcgttccacg cactctgcgg acctccatgg atcatgaacg cgacgggata ttttctgccc
      481 ggttgatagt ccacgggctt catcacgtat ccgtgaaccg tctcgccctt ctcacccttg
      541 aagctgaaga actcggcgtc gccgaatcga atgtcgcgca acctgtccgc gttgaaatgc
      601 gtcacctgcg ccaggccagc gccgcgtgcg tcgagcgtgt acagatccgt gggatgcttg
      661 aagtcctggc gcgcagcgac gatgcggtcg ccggcgacgg cgaagcctgt tacggtgccg
      721 tcactgagca gcttacgcgg cgcgccactc gcaatgtcga tcgcgtagag ggcgtgcatt
      781 ccttcatcgt cgacggtggt gtagagagtc ttgccgtcgt ccgacagtgt cagtccaccg
      841 ggagagcggt cccatttggg atcgatctcg cgctttgcgc cgctcgcgag atccagcgcc
      901 atgatcccga acctatcggc ctcgaagccg ggggttttca tcgccagata gtacagagtc
      961 ctgccatcct tcgacgggac cggcgtcgca tcccaggcga gattctgtgc agtgagattc
     1021 ttcggcgcgg ccgagcgatc ggctggcacg gagtagatgt cgaaattcgt cgaccacggt
     1081 tccgtcttgc cggctatgcg cacgtcgaaa tacactgtct ttccgtcagg agagaaactg
     1141 tactcgctct cgtcgccgaa cggcctggac ggtacatcac cgtcgatgcc acgtgtgaga
     1201 tgcagcggct cggtcgttgc gccgatgggc attatgaaga gctgcgaccg gcgtccgtcg
     1261 gaccaggcgt cccagtggcg aatgaagagg cgatcataca ctcggcccgt tgccttgtcg
     1321 ttcttgactg cttccaggcg tgctgctgtg catgcgagcg tctcgcattc tgcgaacacc
     1381 tgcgccgaga acagtacttc gcggccgtcc ggtgatatcc ggtagttgtc gatgtcgacc
     1441 ggaagatgcg tgacctgcct tgcgtcaccg cccgttgaag acatctgcca gagctggctg
     1501 acgccggata ccgcagcgag aaagtagatg gtctctccgt cgggcgagaa ccgcgcgttg
     1561 ttcgcgtttt gcgcaggctc ggtgagacgg cgcggtgtcg atcccgcttt gttcagctcg
     1621 agcagccaca cgctggtgag acccttgttg gcgtcataat ccgtggtgcg aaccgtgaac
     1681 gtcacactgc tgccatccgc ggaaagttga ggatcggaga cccggtccat catcaccagg
     1741 tcgtgcacgt tgaagggatg cgaagaaacc tgggccattc cgggggcggc ggtgagaacg
     1801 agcaacgata cagtgacgag gcttttcata ctggcgtcct gtttccgtgg ttggatgaac
     1861 gctatagcgc cgaagggctc cgcgctagaa tcacgattcg ccatggacga gcccgggtga
     1921 ggttccggtc cgtacgcgtc gctggcggca aacaccatcc gtctgtagct tagccggaat
     1981 cccaggccgg cagtgatcac ctagtgatca tccagtgatc accggcacag acgtggttcc
     2041 ggttaagccc ggcaagacta catgcgatat ttggctcgga cgagtggtcg gcgtgtgact
     2101 ctgatgggtg tcctggagtt ggcaaaggga gagtttccag gacgtcggac tctgctcttg
     2161 ctcatgtgtg cagtcgcgat gacaccggcg cttgccggag cccaggatcg tgcaacacaa
     2221 tacgtcgctc caacgaacgc gacagtgaca acggatcttg aagagggctt cgggtcgact
     2281 ccgtatcaga cgatctggat tcgcaattcg tcgaccgtgc caattcacgt gtacagcgtg
     2341 acattacgaa gctgtgaaaa cgtccgggag gactgcagcc cgtttccctt gaacctgcac
     2401 gtcgggccgg gtcgccgcgt actgttacgt cgcgtcgatc cacacgatgc aaacgccggc
     2461 ttcagcttcc gttacacctt cgggtggcag gccgattcaa gctctgtgga agccctgcac
     2521 ctgctggcag acaacggcgt ggcacaggcc agaagtcttg tcgccgcaca ggacgcagcc
     2581 agggcccagc agaacgccgt cgttggtgtg cacgataccg atctgggcaa cgccgacatt
     2641 gtcgcgctcg gagcacagat cgcgactctt cgtgtcgatc cggactccgt cgtgttgcat
     2701 ccgacccagg cgctgctgct caacaacgtg cgcgtgctcg caatcgacag tcacggagcc
     2761 atactgggac gcgtaagagc attccagttt cgtgctctcg cgggtgcggt ggtgatgcac
     2821 tccgacacag tagtggcact gcgcgccggt agaactacag cggagtttcg tcttgcaccg
     2881 ccagcgactc cgcttacggt gagcttgccg ataattgtga cggcggattc ggtgaagtga
     2941 gtctgcgaca gaacacgtct acccttccac gatccccaac acccgcaacg gactcccgct
     3001 cccgttcaca atcttgagcg gcgccgcgat caccaccgcg cctgtcgccg g
//
LOCUS       DATIMD010000169         5534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3528480, whole genome shotgun sequence.
ACCESSION   DATIMD010000169 DATIMD010000000
VERSION     DATIMD010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5534
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3528480"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..612
                     /locus_tag="VLI40_03845"
     CDS             <1..612
                     /locus_tag="VLI40_03845"
                     /inference="COORDINATES: protein motif:HMM:NF013038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase C-terminal domain-containing
                     protein"
                     /protein_id="HSU96334.1"
                     /translation="HFHSAESDDSSVEEQVGRFMSAVASLNADIPLLHAANSAAAARG
                     VNGGGRWGAIRPGVFLYGVGRGLSANARPVVSLRARVVDVRWIEPGDTVSYGATYTAK
                     RRERIATASVGYGDGYPRSLSDRATAMLHGSRIPQRGLVTMDMTMFDVTEVPCEIGDV
                     VTLIGDEGGAGLTIEGIAELAGMSPYEVLTGFAERLDRRYAGV"
     gene            621..1793
                     /locus_tag="VLI40_03850"
     CDS             621..1793
                     /locus_tag="VLI40_03850"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008973 - phosphopentomutase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA];
                     GO_process: GO:0043094 - cellular metabolic compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HSU96335.1"
                     /translation="MARRAAIIVLDGAGIGEAPDAAAYGDAGSDTLGHVIERMAPATL
                     ENLHEAGLGNIRPINGLDAVAYPQAAVGMMSPTAAGKDSTTGHWEIAGVRIAMPFPTY
                     PTGFPASLIAEFADRTGRGVIGNVVGSGTDVIAKFGDEHIRTGSWIVYTSADSVFQIA
                     AHEAVIPLAELYAGCEAAREMLVPPNNVSRVIARPFVGEAGSFQRTANRRDFSVQPPS
                     ETLLDALAAAGIDRSGVGKVDDLFARRSITSRHTSGNAEGIRLIQEWLGSTTDTGLLF
                     ANLVDFDQLYGHRNNVPGFFGALREFDAALPTLRRALREEDLLFITADHGNDPTTAST
                     DHARENVPVLAFGAAIRPGNTIGHRATFADLGATVADWFGLGFRGAGTSFLAQVLR"
     gene            1790..2194
                     /gene="cdd"
                     /locus_tag="VLI40_03855"
     CDS             1790..2194
                     /gene="cdd"
                     /locus_tag="VLI40_03855"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: protein motif:HMM:NF004064.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004126 - cytidine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0008655 - pyrimidine-containing compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HSU96336.1"
                     /translation="MSTKSLRDVAEAARANAYAPYSHFHVGAALRSDAGNVYGGANVE
                     NASFGVGICAERSALVAAVTAGERSFAELVLVSDATEPAAPCGACRQALSEFAPALRI
                     VSHGLNGETAEWSLAELLPCQFKLDESNRFTE"
     gene            2341..3495
                     /locus_tag="VLI40_03860"
     CDS             2341..3495
                     /locus_tag="VLI40_03860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96337.1"
                     /translation="MQITTVTLDAVKIDSTVLGGLGKGTEPEMLLANRGDTLDTRVII
                     RFDTLPSRTVTSATDTGVPINYADSAFLKMYVDSAAAKLAVPVTVSLYDVDDTSAVDD
                     TSAAAVAPLFTPARFITSTQFAPGALADSIKIQLPTAFVLAKAQAHARLRLGMRVSAS
                     TSVEFRVLSGESGFSSRLSMRVSKDTSVTPVVMSPYSLTPTDNVSIAQSVADFTIVVK
                     GTPPPPPGILTIGGLPGTRAYLSFNIPPAISDSSLVVAATLVLTQQASASPDPTDSMS
                     IQPFLVLAGPGVSDPAKAAQIVAPASVLGLSPLRTPPGTSGVREVQIGPAFKYWGVQN
                     ASELPRAIVLQSLQEDYSAQQAFFYSSSSDPALRPKLRISYTPRARIGVP"
     gene            3492..4640
                     /locus_tag="VLI40_03865"
     CDS             3492..4640
                     /locus_tag="VLI40_03865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96338.1"
                     /translation="MSNRFLIAVVAATALTASTLHGQGSLSSQGLGYPPGELSTRALG
                     TAGAVGEIDARSPINPAALAIRTAPQVYAQYDPEFRKITSNGQTSSTTLARMPNIGGV
                     LPLNGHLVLGLSASTFLDRTWETARSRTQPFGPNPGDTVAFNETLKSEGAITDVRLAL
                     AYAVNDRLRFGVGVHTFPGSMRLTSNEIFPDTTKFQNITQLNQVSFSGRAVSVGMEAA
                     LLPTLSVAISGRKGGTARMFANDSLLTTGTIPTRYSGSLAFTGIPGTMIAARASHETW
                     SELDGLSYAHTLAVDANDVSLGVESSGPRIGGGFPILVRLGVRRRTLPFAVGTEAVQE
                     TSFGGGIGIPIAFDRVTLDMALLHEARTGVAGVSEHGYNLSFGLQVHP"
     gene            4648..>5534
                     /locus_tag="VLI40_03870"
     CDS             4648..>5534
                     /locus_tag="VLI40_03870"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU96339.1"
                     /translation="MDTEQEPPLILVADDVPANVELLFDQLQTLGFRTVAAVDGPTAI
                     AACIEHHPDLCILDVAMPAGELGVDHRSTGFEVCRRIKRDARTARIPVIFVTALNDTS
                     DRVKGIEAGGDDFLTKPHNRLVLGARVRSLLKLKAATDALEESYRKLRELEKVRDDLM
                     KMIVHDLKTPLTSVLATLEMVGDGDFGAVSLEQRHALSDAETKAEELLGLIGDLLEVA
                     KVEETGIVLERQEIAPGAFIAEVLHEWNVRFTQEGASVVTSVSEDAATFEADKPLLKR
                     VFSNILQNALTHSGRAIELR"
BASE COUNT          990 a         1676 c         1803 g         1065 t
ORIGIN      
        1 cacttccatt cggcggaatc ggacgattcg tcggtggagg aacaggtcgg tcgcttcatg
       61 agtgctgtcg cgagcctcaa cgccgatatc ccgttgctgc atgctgccaa cagcgctgcc
      121 gcagcgcgcg gggtgaatgg cggcgggcgt tggggagcga tacgccccgg cgtgttcctc
      181 tacggcgtag ggagggggct cagcgcgaac gccaggcccg tcgtgagtct gcgcgcgcgg
      241 gtagtggatg tccggtggat cgagcccggt gacaccgtga gttatggggc gacgtatacg
      301 gcgaaacgcc gggagcggat cgcaacggct tctgtcgggt atggcgacgg ctacccgcgc
      361 tctctttctg atcgggcgac ggcgatgctg cacggaagtc ggatccccca acgcggactg
      421 gtgaccatgg acatgacgat gttcgacgtg actgaggtgc catgcgaaat aggcgacgtc
      481 gttacgctga tcggtgacga gggcggggcc ggcctcacga tcgaggggat cgccgagctg
      541 gcaggcatgt ccccgtacga agtgctcacc gggtttgccg agcggctgga ccgccggtac
      601 gcaggggtct gagcggaccc atggcgagac gcgcggcgat aatcgtcctg gatggagcgg
      661 ggatcggcga ggctccggac gccgctgcgt acggcgacgc tggcagcgat acgctcggcc
      721 acgtgatcga aaggatggct cccgcgacgc ttgagaactt acatgaagcc gggctcggta
      781 acatacgccc catcaatggg ttggacgctg tcgcatatcc tcaagccgca gttggcatga
      841 tgtcgcccac ggcggctggc aaggacagca ccactggcca ctgggagatc gccggcgtca
      901 gaatcgcgat gccgtttcca acctatccga ccggatttcc ggcgtctctg atcgcggagt
      961 ttgcggaccg cacgggacgc ggagtaatcg ggaatgtcgt gggaagcggg accgacgtga
     1021 tcgcgaaatt tggtgacgag catatccgta ccggctcatg gatcgtgtac acgtccgccg
     1081 attctgtctt tcagatcgcg gcccacgagg ccgttattcc gctggccgag ttgtatgctg
     1141 gatgcgaggc agctcgcgag atgctggtcc cgcccaacaa cgtatcgcgg gtaattgcgc
     1201 ggccgtttgt gggcgaggca ggctcctttc agcgcacggc gaaccggcgc gatttctcgg
     1261 tacagccgcc gtccgagacg ctgctcgacg cgctcgcggc cgccgggatc gacaggagcg
     1321 gagtcgggaa ggtcgacgat cttttcgccc gccggtccat cacatctcgg cacacatccg
     1381 gaaacgccga aggaattcgt ttgatccagg agtggctcgg aagtacgacg gataccgggc
     1441 ttctattcgc caaccttgta gatttcgacc aactttacgg ccacaggaac aacgtaccgg
     1501 gctttttcgg ggcgctgcgg gaatttgacg cggcgcttcc aacgctcagg cgtgcccttc
     1561 gcgaggaaga cctgctgttt atcaccgccg atcacggcaa cgaccctaca actgcttcga
     1621 ccgaccatgc gcgcgagaac gttccggttc tcgcattcgg agcggcgatt cgtccgggca
     1681 acaccatagg gcacagggcg acgtttgcgg atctgggtgc gacggtcgcg gactggttcg
     1741 ggttgggttt ccggggcgct gggacgtcgt tcctggcgca ggtgctccgt tgagcacgaa
     1801 gtctctgagg gatgtggcgg aggctgcgcg tgcgaacgca tacgcgccgt attcgcattt
     1861 tcacgttggc gccgctctcc ggagcgacgc tggcaacgtt tacggtgggg ccaacgtcga
     1921 gaatgcctcg ttcggtgttg gaatctgcgc cgagcgatcg gcgctggtag cggcagtgac
     1981 tgcgggcgaa cgcagctttg cagagttggt gcttgtgagc gacgcgacgg agcctgcggc
     2041 tccatgcggt gcttgccggc aggcgctttc ggagtttgct ccggcgctgc gaatagtgag
     2101 tcacgggttg aacggagaga ccgctgaatg gtcgctggcg gagctgcttc cgtgccagtt
     2161 caagctggat gaatcgaacc gatttacgga gtgatattga agagatggaa tttcgcgacg
     2221 ccctttagcc gcgcgggcgc ggcagtcgct gtcgcgacca tgatcgctct agtggcgact
     2281 ggttgtacgg agaaactgga tggctcggcc ggttgtccgc tcacgtgcgt cgatcagtcg
     2341 gtgcagatca ccacagtgac actcgatgcg gtcaagatcg actccacggt gctcggcgga
     2401 ttgggcaagg ggaccgagcc tgagatgctg ctcgccaatc gcggcgacac gctcgacacg
     2461 cgggttatca tccggttcga tacgctgcct tccagaactg ttacgagcgc taccgacact
     2521 ggtgttccga tcaattacgc cgacagcgcg tttctgaaga tgtacgtcga cagcgcagcg
     2581 gccaagctgg ctgttccggt gacggtttca ctctacgacg tcgacgatac gtccgccgtg
     2641 gacgacactt cggcggccgc agttgctccg ctgttcacgc cggcacgctt catcacgtcg
     2701 acccagttcg cgcccggagc tctggccgat tcgataaaga tccagctgcc cactgcgttc
     2761 gttctcgcca aggcgcaggc acacgcgcga ttgcgtctgg ggatgcgggt gtccgcgtcg
     2821 acatcagtgg agttccgcgt gctctccgga gagtccggct tctcgtcgag actgtcgatg
     2881 cgcgtttcca aggacaccag cgtcactccc gtggtaatgt cgccgtattc gctcactccg
     2941 acagacaacg tctcgatcgc gcagagcgtc gccgacttca cgatcgtcgt aaagggaaca
     3001 ccaccgccgc caccgggcat tctgacgata ggtggactgc ccgggacacg cgcgtatctg
     3061 tcgttcaaca ttccgccggc catctcggac tcatcgctcg ttgtcgcggc gacactcgtt
     3121 ctcacccagc aggcgagcgc atcgcccgat ccaaccgact cgatgtcgat acagccattc
     3181 ctggtgctgg ctggccctgg ggtgtcggat cccgccaagg cggctcagat cgtcgcgcca
     3241 gcgagcgtgc tcgggttgtc accgctcaga acaccgccgg gtacgtccgg cgttcgtgag
     3301 gttcagatcg ggcccgcgtt caaatactgg ggagtgcaga acgcgtcgga gcttccgcgc
     3361 gcgatagtgc tgcagagtct ccaggaagat tattccgcac agcaggcgtt cttctattca
     3421 tcgtcgtccg atccggcgct gagaccgaag cttcgcatca gctacacacc tcgtgcccgg
     3481 attggcgttc catgagtaac agattcttga ttgccgtggt tgccgccact gctctgacgg
     3541 cctccacact ccacggtcag ggatcgctca gctctcaggg tctgggttac cctccggggg
     3601 agctcagcac gcgcgcgctc ggcactgcgg gcgcggtcgg cgagatcgac gcgcggtcgc
     3661 ccatcaaccc tgcggcgctt gccattcgta ccgcgccgca ggtttacgcg cagtacgatc
     3721 ccgagttcag gaaaatcact tcgaacggac agacatcgtc gacgacgttg gcgcgtatgc
     3781 cgaatatcgg cggcgtgctt ccgttgaacg ggcacctggt gctgggcctc tccgcgtcca
     3841 cgtttctcga tcgcacgtgg gaaacggcac gttcgcgcac gcagcctttc ggtcccaacc
     3901 ccggcgacac ggtcgcgttc aacgaaacgc tgaagagcga gggggccatc actgatgtgc
     3961 ggctcgcgct ggcgtatgcc gtcaatgatc gcctgcgctt tggagtcggc gtgcacacgt
     4021 tcccgggatc gatgcgtctt acatcaaacg agatctttcc tgacacaacc aagtttcaga
     4081 acatcactca gctgaatcag gtgagctttt cgggccgcgc cgtatccgtc ggaatggaag
     4141 cggccttgct accgactctc agcgtggcaa tcagcggacg gaagggcgga acggccagga
     4201 tgttcgcgaa cgactcgctg ctcaccaccg gcacgattcc gacgcgctat tcgggctcgc
     4261 tcgcgttcac cggaattccg ggaacgatga tcgcggctcg cgcatcgcac gaaacgtgga
     4321 gcgagctcga tggtctgagc tacgcgcaca cgctggctgt cgacgcaaac gacgtcagcc
     4381 tcggtgtcga atccagcggt ccgcgtatcg ggggcggctt tccgatcctc gtgcgtctcg
     4441 gagtacggcg gagaacgctt ccgttcgcgg tcgggaccga agcggttcag gaaacgtcat
     4501 tcggcggcgg aatcgggatt ccaatcgcgt tcgatcgcgt aacactcgac atggcgctgt
     4561 tgcacgaagc acgcacggga gtcgccggcg tgagcgaaca cggctacaac ctcagcttcg
     4621 ggctgcaggt gcatccctaa acgacgaatg gataccgagc aggagccgcc cctcattctc
     4681 gtcgccgacg acgtgccggc gaacgtggag cttctgttcg atcagttgca gacgcttggc
     4741 ttccgtacgg tcgccgcggt cgatggaccg acggcgatcg cggcgtgcat cgagcatcac
     4801 cccgatctct gcattctcga cgttgctatg ccggcgggcg agctcggcgt tgatcatcgg
     4861 tccaccggct tcgaagtgtg ccgccggatc aagcgtgatg cgcggacggc acgcataccg
     4921 gtgatcttcg ttacggcgct caacgacacc tccgatcgcg tgaaggggat cgaagccggc
     4981 ggtgacgact ttctcaccaa gccgcacaat cggctcgtgc tcggcgctcg cgtgcgcagt
     5041 ctgctcaagc tcaaggccgc gaccgacgcg ctggaagaga gctaccggaa gttgcgcgag
     5101 ctcgagaagg tccgcgatga tctcatgaag atgatcgttc atgatctcaa gacgccactc
     5161 acctccgtac ttgcgacgct cgagatggtc ggcgatggtg acttcggcgc ggtgtcactc
     5221 gagcaacgtc acgcgttgag cgacgctgag acaaaggccg aggagctgct gggactgatc
     5281 ggtgacctgc tggaagttgc gaaggtggag gaaaccggaa tcgtgctcga gcggcaggag
     5341 atcgcgccgg gtgctttcat cgccgaggtt cttcacgaat ggaacgtgcg cttcactcag
     5401 gagggcgctt ccgtcgtaac gtcggtctcc gaggacgccg caacgttcga ggccgacaag
     5461 ccactcctca agcgcgtgtt ctccaacatc ctccagaatg cgctgacgca ttccgggcgc
     5521 gcgatcgagc tgcg
//
LOCUS       DATIMD010000170         1500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_643106, whole genome shotgun sequence.
ACCESSION   DATIMD010000170 DATIMD010000000
VERSION     DATIMD010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_643106"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            327..755
                     /locus_tag="VLI40_03875"
     CDS             327..755
                     /locus_tag="VLI40_03875"
                     /inference="COORDINATES: protein motif:HMM:NF019499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin K epoxide reductase family protein"
                     /protein_id="HSU96340.1"
                     /translation="MRVRYFLLAGLAAAGCVVATYLALYQAGVVTTVWEPLFGDGSRL
                     ILHSSLARALPVPDAAIGAVAYLAEFLCATVRWDGRAGNVWVDRIYYVLVVAFAIASA
                     LLVALQWGYFHAWCTLCLTSALLSLVITGVVFSEFRERRG"
     gene            752..>1500
                     /locus_tag="VLI40_03880"
     CDS             752..>1500
                     /locus_tag="VLI40_03880"
                     /inference="COORDINATES: protein motif:HMM:NF005495.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU96341.1"
                     /translation="MSGSPEVVVITGASAGVGRATVRKFAQRGAHIGLIARGIDGLDG
                     ARRDVEACGGKALVFEVDVADADAVDAAASAVEGTLGPIDVWVNDAMTSVFSPFKEMT
                     AAEFKRVTEVTYLGFVYGTMAALKRMLPRNRGTIVQVGSALAYRSIPLQSAYCGAKHA
                     IAGFTDSIRCELIHDHSRVHITMVQMPALNTPQFGWVKSRLPNKPQPVPPIYEPEVAA
                     DAIFWAAHHRQREVWVGIPTIAAIVGNKFIPG"
BASE COUNT          265 a          475 c          468 g          292 t
ORIGIN      
        1 cgcgcgtgaa cttggcgtgc gcggacgcca tgaacgcggc ctgctcctcg tgtcttacct
       61 gaatgaagtc cagcttgccg tttgtccgat cgatcgccga gatgagtccg ttgatcccgt
      121 cgcccgggta accgtaaatc cgccgaactc cccaggcgat caaccgctac acgatgaagt
      181 cgcctgtggt tgcgctcata tgtgtccgtc cattttattg aaaattccac cgatcgcaga
      241 atccgttcgc tcggaatacg gctggcatag cccataccgc gagcggacgc ggccgccgaa
      301 tgcataaacg aacgccacca actcccatgc gtgtccgcta ctttctgctg gcgggactgg
      361 cggccgcagg atgcgtggtc gccacctacc tcgcgctgta ccaggcgggc gtcgtcacca
      421 ccgtctggga gccgctcttc ggcgacggca gccgcctcat cctgcactcc tcgcttgcgc
      481 gcgcacttcc agtgcccgac gccgcgatcg gcgcggtggc gtatctggca gagtttctgt
      541 gcgctaccgt gcgttgggac gggcgagcgg gaaatgtctg ggtggatcgc atctactacg
      601 tgctggtcgt ggcgttcgcc atcgcaagcg cgctgctcgt cgcacttcaa tggggatatt
      661 tccatgcgtg gtgcacatta tgcctcactt ctgcactgct ctcgctcgtc atcacgggag
      721 ttgtgttcag cgaatttcga gagaggagag gatgagcggc agtccggaag tagtggtcat
      781 caccggtgcg tcggctggtg ttgggcgcgc caccgtgcgc aagtttgcgc agcgcggcgc
      841 gcatatcggc ctcatagcgc gcggaatcga cggactcgac ggcgcgcgcc gcgatgtcga
      901 agcatgcggc ggcaaggccc tggtgttcga ggtcgacgtt gctgacgccg atgcagtcga
      961 cgctgccgcg tccgcagtcg aaggcacgct cgggcccatc gacgtgtggg tgaacgatgc
     1021 gatgacgtcg gtattctcgc cgttcaagga gatgacagcg gcagaattca agcgcgttac
     1081 cgaggtcaca tatctcggct tcgtttacgg aaccatggcg gcgctcaaac gcatgctgcc
     1141 acgcaaccgc gggacaatcg tgcaggtcgg ctcggcgctc gcgtaccgga gcatcccgct
     1201 gcagtctgcg tactgcggag ccaagcatgc gattgccggc ttcaccgact cgatccgctg
     1261 tgagctcatt cacgaccaca gccgcgtgca catcacgatg gtgcagatgc cggcgctcaa
     1321 tacaccgcag ttcggctggg tcaagtcgcg tctgccgaac aagccacagc cggtcccgcc
     1381 aatttacgag ccggaggttg cggcggacgc aatcttctgg gcagcgcacc accgccagcg
     1441 cgaagtgtgg gtcggcatac caaccatcgc cgcgatcgtc ggcaacaagt tcatacccgg
//
LOCUS       DATIMD010000171         5569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2372553, whole genome shotgun sequence.
ACCESSION   DATIMD010000171 DATIMD010000000
VERSION     DATIMD010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5569
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2372553"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..454)
                     /gene="folE"
                     /locus_tag="VLI40_03885"
     CDS             complement(<1..454)
                     /gene="folE"
                     /locus_tag="VLI40_03885"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I"
                     /protein_id="HSU96342.1"
                     /translation="MATDAIFEPDTDDVAPSSASAAMLSMYEDMVRKQLTLLGEDPTR
                     EGLLKTPGRVARSMAFLTRGYQQDARTIIGDAMFDEEHSNMILVRDIELYSMCEHHML
                     PFFGKAHIAYIPDGRIVGLSKLARVVDIFARRLQVQERLTVEIAQAITD"
     gene            complement(444..857)
                     /locus_tag="VLI40_03890"
     CDS             complement(444..857)
                     /locus_tag="VLI40_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HSU96343.1"
                     /translation="MPTVTVTRRLKFNAAHRVHNPALSDEENRRIFGKCNNPHGHGHN
                     YTLDVSVAGEVDPNTGYVFDLSGLKELVTREIVDFVDHHNLNVDVPFMHGVIPTAENM
                     IIQFWRILEGKIKPGRLVRLVLWETENNYVEYDGH"
     gene            1129..1305
                     /locus_tag="VLI40_03895"
     CDS             1129..1305
                     /locus_tag="VLI40_03895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96344.1"
                     /translation="MDLGIVVAVVMLAVWGVWTFALNAPGWAHILLTVGVFLLFYRIV
                     VRGTPGYPTTGRKE"
     gene            1309..2331
                     /locus_tag="VLI40_03900"
     CDS             1309..2331
                     /locus_tag="VLI40_03900"
                     /inference="COORDINATES: protein motif:HMM:NF016228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HSU96345.1"
                     /translation="MFDPSASVSGRGAIAEEPLALQLGPPGRGRSVVVTGAAGFVGCH
                     ACRLLTEKGWQVRALVRSAAKAAERLAHLPVEIRIGDIRDPAYLASSMEGAFAVVHLA
                     AIAIEHDSDTYESINTDATRAVVESASAAQVRRFLHMSQNGSDSKSPYRFLRSKGAAQ
                     DIVTSSNLDWTVLRPSVIFGREDEFVNMLARLVRLTPFVLPLPDGGRTRFQPIAVNDV
                     GMVIAQAIGDDSTHRQIFPLGGSAELTLRQIAERILVAMNARRAVIGVPTAVIRPLVA
                     ALWHLVPKPPVTTELLDILALNNTVPDNTLMSVFGITPTPFAPEELLYLRHISFGEAL
                     QSLFRN"
     gene            complement(2328..3422)
                     /locus_tag="VLI40_03905"
     CDS             complement(2328..3422)
                     /locus_tag="VLI40_03905"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HSU96346.1"
                     /translation="MQPATFFLPGPTQVSEDVLRAMLRQPIPHRGAEFHEIFSRIQSG
                     MRDVFRTQRQVYVLTSSGTGGMEAAIRCAPRGRILALVNGAFGERFVRLAHVCGREVD
                     KLDVALGDVPDPAEVSMRLGSGSYSALTMVHNESSTGALADVRAIARAAREAGVVTIV
                     DSVSGIAGARLEFDAWEVDCVVSASQKALALPTGLAFAVVSERYLRAIEQVDDRGMYF
                     DLLEYESHGRNNETPITPAVSLIFALDRQVQSIVKEGMEARWARHEAMRVTMEKWVDT
                     TRDALDIEMAIFAKAGARSPTVTAVSLPAGIVSGDLVRKVSERGYTIGAGYGVLRSGT
                     FRVGHMGDHTVAGLESCLGAIADGLKALRS"
     gene            complement(3423..4400)
                     /locus_tag="VLI40_03910"
     CDS             complement(3423..4400)
                     /locus_tag="VLI40_03910"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSU96347.1"
                     /translation="MTAGFAKNFKRSPSASGPYPATVRDVASLNSVFSSAFTDRYRKD
                     GLVGVHVPNLSSAIWRFAIEDADGGAMLWRGERDEVVAFNMCHLSGTEGWMGPLAVAP
                     PMQGHGVGKTVVTEGTRWLMSHGARVVGLETMPRTVDNIGFYSSLGYIPSHLTITITL
                     DAEYAENRIVQLGRLSESERTDLVARCSELAHDVSPGYDFTREINLTHALGLGDTLVL
                     ERGGTVDGFALCHTAPLVEGRGRDELRVLKLVCRAESDVDVLATQLADYARRSGTRRV
                     AIRMQGAYSRLYAQLVARGARIRWTDLRMTLADHPEPTPAGVILSNWEI"
     gene            complement(4401..>5569)
                     /locus_tag="VLI40_03915"
     CDS             complement(4401..>5569)
                     /locus_tag="VLI40_03915"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SbcC/MukB-like Walker B domain-containing
                     protein"
                     /protein_id="HSU96348.1"
                     /translation="YHDREEQLTAIPPGVSALEEKRRGLAATLTTLERKLAKVQAAVH
                     ELPGLTREITAKEQRRAEMLAEINSMSAVYDAERHAHVRAQIERLAPMDLRAARLEAA
                     VERAPAAQVERARIDAELATAVAKRDTLRKAGATREFSQTAHDQIRADFERATEAARA
                     SELMVVGAQGDVRAAQQRLDTAEAAKREYERVAERLRVLNGQRLIHDELDNAFRDLRG
                     DLNDALRPELSEIASSFLGSLTDERYNRLELDERYDIVVLEDGIAKPVISGGEEDLAN
                     LVLRLAISQMIADRSGQPFSLLVLDEVFGSLDASRRDNVLELLHRLEDRFEQVILITH
                     IESVREGVDRVIVVRYDEETGASIVDGSDEGILPLRLSERDDVEIDTVSPMQGA"
BASE COUNT         1019 a         1815 c         1623 g         1112 t
ORIGIN      
        1 cgtccgtaat ggcctgcgcg atctcgaccg tgagacgctc ctgcacctgc agtcgccgtg
       61 caaagatgtc cacgacgcgc gcaagctttg agagtccgac tattcgtccg tccggtatgt
      121 acgcgatgtg tgccttcccg aagaatggca gcatgtggtg ctcgcacatg gaatacagct
      181 cgatgtcacg caccaggatc atgttcgagt gctcttcgtc gaacatcgcg tcgccgatga
      241 tggttcgcgc gtcctgttga tagccgcgtg taaggaatgc catcgaacgt gcaacgcggc
      301 ccggtgtttt gagcaatccc tcgcgcgtcg gatcctcgcc gagcagggtc agctgcttgc
      361 gtaccatgtc ttcgtacatg gacagcatgg ctgccgatgc gctggacggc gcgacgtcgt
      421 cggtgtcggg ctcgaatatc gcgtcagtgg ccatcgtatt ccacgtagtt gttctccgtt
      481 tcccacagta ccagtctgac aagacggccc ggcttgatct ttccttcgag gatgcgccag
      541 aattgaatga tcatgttctc ggctgtaggg atcacgccgt gcatgaacgg aacatccaca
      601 ttcagattgt ggtggtcgac gaaatcgacg atctcacgag taacgagctc cttgagcccg
      661 ctcaggtcga acacatagcc agtgttcggg tccacctcgc cggctacgga tacgtccagc
      721 gtgtagttgt gcccatggcc gtgcggatta ttgcacttgc cgaaaatgcg gcgattctcc
      781 tcatccgaga gagccggatt gtggacgcgg tgcgccgcat tgaacttgag tcgccgagtg
      841 actgtgaccg ttggcatgcg ccctccggac gcaaaaacct ccgtcgtggc tcgagccacg
      901 acggaggtcg gagcggagag gatttttgaa gccctgtcga aacaatgagg ctctcaccca
      961 cgctttccgc cttccccgca ctggggcatg acgtcggcac agtttgttga tcccacgtga
     1021 aggacttatc ggctcaaaaa ctgagctctc cgccccgatg gaaaccgcgt aacttatacg
     1081 gaagaaagct attggtggtt ccgcatccgg tcaacggact tgaggggtat ggatctaggc
     1141 attgtagtag cggtagtgat gctcgcggta tggggcgtgt ggacgttcgc gctcaacgcg
     1201 ccggggtggg cgcacattct gcttaccgtg ggtgtgtttc tgctgttcta tcgcatcgtc
     1261 gtacgcggca caccagggta ccccaccacg ggccgtaaag agtaaataat gttcgatcca
     1321 tccgcgtcgg tcagcgggcg cggtgcgatc gcggaagaac cactcgcgct gcagctcggc
     1381 ccgccgggac gcgggcggag cgtagttgtg accggcgccg ctggattcgt cggatgtcat
     1441 gcctgccgcc ttctcacgga aaagggctgg caggtccgcg cacttgttcg aagcgccgcg
     1501 aaggctgctg agcgcctcgc ccatctccct gtggagattc gaatcggcga cattcgggat
     1561 cccgcatacc ttgcgtcgtc catggagggt gccttcgcgg tcgtgcatct cgccgcgata
     1621 gccatcgaac acgacagcga cacgtacgag tcgatcaata cagacgcaac gcgagctgtg
     1681 gtcgaatccg cttccgcggc gcaggtacgc agattcctgc acatgtcgca gaacgggtcg
     1741 gacagcaagt ctccttaccg attcctgagg agcaagggag ctgcacagga catcgttaca
     1801 tcgagcaatc tcgactggac cgttctccgc ccgtcggtca tcttcggccg tgaggatgaa
     1861 ttcgtcaaca tgctcgcgcg cctcgtgcgg ctgacgccat tcgtgctgcc tctccctgac
     1921 ggtggacgca cgcgctttca gccaatcgct gtgaacgatg tcggcatggt tatcgcacag
     1981 gcaatcggcg acgactccac tcaccggcag atctttccac tcggcgggtc agccgagttg
     2041 acgcttcgtc agatagcgga gcgcattctc gtcgcgatga acgcgcgtcg tgccgtgatc
     2101 ggcgtaccga ccgcagtcat acgaccgctc gtcgctgcgc tgtggcatct ggttcccaaa
     2161 ccgccggtaa cgactgagct gctcgacatt ctcgcgttga acaacactgt gcccgacaac
     2221 acgctcatgt cggtgttcgg aataactccc acgccgtttg caccggagga gctgctgtac
     2281 ctccgccaca tcagcttcgg cgaagcgctc cagtcgttgt tcaggaacta gctccgcaag
     2341 gctttcagcc catccgcgat tgcgccgaga cacgattcca gtccggcaac cgtatggtct
     2401 cccatatgtc ctacgcgaaa tgttcccgag cgcaacacgc cgtagccggc accgatcgta
     2461 tatccacgct ccgaaacctt cctgaccagg tcgcccgaca cgattccggc gggtaacgac
     2521 accgctgtca ctgttggcga ccgcgctccc gccttcgcga atatcgccat ctcgatatcc
     2581 agggcgtcgc gggtggtatc gacccacttc tccattgtca cgcgcattgc ttcgtgccgc
     2641 gcccagcgcg cctccatccc ttccttcacg atcgactgga cctgtcgatc gagcgcaaag
     2701 atcagcgaca ctgcgggtgt tatcggcgtt tcattgttgc gaccgtgcga ctcatactcg
     2761 agcaggtcga agtacatgcc gcggtcgtcg acctgttcga tcgctcgcag gtacctctcg
     2821 gataccaccg cgaacgccag tccggttggc agcgcgagcg ccttctgcga cgcgctgacc
     2881 acacagtcga cttcccacgc gtcgaactcc agtcgcgcac cggcaatccc gctgacgcta
     2941 tcgactatcg tcacgacgcc ggcctcccgc gcggcgcgag cgattgcgcg aacgtccgcc
     3001 aacgcgccgg tcgagctctc gttgtgaacc atggtcagcg cggaatacga cccggagccg
     3061 agccgcatgc tgacttcggc gggatccgga acgtcgccga gcgcaacgtc gagcttatcg
     3121 acctcgcggc cgcacacatg tgcgagtctt acaaagcgct cgccgaacgc cccgttcacg
     3181 agggccagta tcctgccacg cggcgcacac cggatcgcag cctccattcc gcccgtgccc
     3241 gaagatgtca gcacgtacac ctgacgttgt gtcctgaaca cgtcgcgcat accggactgg
     3301 atgcgcgaga agatctcgtg aaactcggcg ccgcggtgag gtatcggctg ccgcagcatc
     3361 gcccgcaata catcttcgct gacctgggtc ggccccggga ggaaaaaggt ggccggttgc
     3421 acctagatct cccagttcga tagaatgacc ccagctggcg tcggctcggg atgatcggcg
     3481 agcgtcatgc ggagatccgt ccatcggatg cgcgctcccc tggcaacgag ctgcgcgtac
     3541 agtctggaat acgccccctg cattctgatg gcgacgcgac gggtaccgga tcgccgcgca
     3601 tagtccgcga gctgtgtggc gagcacgtcg acatcgctct cagcgcgaca caccagcttc
     3661 agcacgcgca gctcgtccct gccccgccct tccaccagtg gcgcagtgtg acacagcgcg
     3721 aagccatcga ccgtgccgcc gcgctccagc acgagtgtat cgccaagacc aagcgcatgg
     3781 gtcagattga tctctctcgt aaaatcgtat ccgggcgata cgtcatgcgc gagctccgag
     3841 catctcgcta ccagatctgt acgctcgctc tccgatagcc tgcccagctg cacgatcctg
     3901 ttctcggcgt actccgcgtc cagcgtgatg gtgattgtga ggtgggatgg gatgtagcca
     3961 agcgatgaat agaagccgat gttgtcgacc gtgcgaggca tggtttcgag accgacgacc
     4021 ctggcaccgt gactcatgag ccaccgtgtc ccctcggtga cgacagtctt gccgacgccg
     4081 tgcccctgca tcggaggagc gacagcgagc ggtcccatcc atccttccgt tccggacaag
     4141 tggcacatgt tgaatgcaac cacttcgtcg cgctcaccgc gccacaacat cgcgccgccg
     4201 tcggcgtctt cgatcgcgaa gcgccagatc gccgagctga gattgggaac gtgtacgcct
     4261 accagcccgt cctttctgta gcgatctgta aatgcgctgc tgaacaccga attcagactt
     4321 gcgacgtcgc gcaccgtcgc tggatacggc cccgatgcac tgggcgagcg tttgaagttc
     4381 ttcgcaaatc cagcggtcac tcaggctcct tgcatcgggc ttaccgtatc gatctccacg
     4441 tcatcgcgct ccgacagcct gagcggcagg attccctcat cggacccatc cacgatcgac
     4501 gcccccgtct cctcatcata gcgcacgacg atgactctat cgaccccctc acgcacgctc
     4561 tcgatgtggg tgatgagaat cacctgctcg aacctgtcct ccagtctgtg gagcagctcc
     4621 aatacgttgt cacgcctgga tgcgtccagc gagccgaaaa cctcgtccag caccagcagt
     4681 gaaaacggct ggcctgaccg gtcggcgatc atctgggata tggcgagacg aagcacgagg
     4741 ttggcgagat cttcctcacc acccgatatc acgggcttgg cgatcccgtc ctcgagcacc
     4801 acgatgtcgt accgctcgtc cagctcgagt ctgttgtagc gctcgtcggt aagcgagccg
     4861 agaaacgagc tcgcaatctc ggacagctcc ggccgcagcg catcgttgag atcaccgcgg
     4921 agatcgcgaa aggcattgtc gagctcatcg tggatgagcc gctggccgtt cagcacgcgc
     4981 aatctttccg cgactcgctc gtactcgcgc ttcgcggcct ccgcggtgtc gagtcgttgc
     5041 tgcgccgcgc gcacatcgcc ctgcgcgccg acgaccatca attcgctcgc gcgggcagct
     5101 tcggtcgcac gctcgaaatc ggcgcggatc tgatcgtgag cagtctgcga aaattcgcgc
     5161 gtcgcgccag cttttcggag cgtatcacgc tttgccacgg ccgtcgcgag ctccgcatcg
     5221 atccgtgcgc gctcgacttg cgccgccggt gcacgctcga ccgcagcctc caggcgcgcc
     5281 gcacgaaggt ccatcggcgc cagacgctcg atctgtgcgc gcacgtgtgc gtgacgctcc
     5341 gcgtcgtaca cggcactcat ggagttgatc tccgcgagca tctctgcgcg acgctgctcc
     5401 ttggccgtta tctcgcgcgt gaggccgggc agctcgtgca ctgcagcctg caccttcgcc
     5461 agcttgcgct cgagagtagt gagtgtcgcc gcaagtccgc gacgcttctc ctccagcgcc
     5521 gatacgccag gtggtatggc cgtgagctgc tcttcacgat cgtggtaat
//
LOCUS       DATIMD010000172         1640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3529222, whole genome shotgun sequence.
ACCESSION   DATIMD010000172 DATIMD010000000
VERSION     DATIMD010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3529222"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(581..>1640)
                     /locus_tag="VLI40_03920"
     CDS             complement(581..>1640)
                     /locus_tag="VLI40_03920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96349.1"
                     /translation="GGAQYPAGTFLISNVTSAARDTIASLGVDAVASDVIKIATHPIT
                     LPRIALVHTWIETQDEGWVRYALDRMRVPYTYISDQALREPNALEKFDVVVFPHVQAV
                     GMSLLNGRPMVGPPIPWKTTALTPNIGKLDHTDDMRGGMRLDGAAALRQFVERGGLLI
                     TEGATSQLVAELGFSPTVSAMPLSQVRSRGGSVYRARIVNRASPVLYGYDHPEFPVYF
                     KQAPLLNVAPYDTLDYAGPLDSATIAQTNRMHARVLLAFQSDPDSLVISGLLSAGNEP
                     AGRPAIVDAPMGRGHAIMFAIRPMWRWETQGTFALVINAMANWNALSTADPAVRTSPS
                     QLRPETPASAYRANPRSF"
BASE COUNT          328 a          496 c          521 g          295 t
ORIGIN      
        1 gcagtcgttg cattccgaca gtcgcagacg ccgcacttca agcagatcga cgtcgagcga
       61 atcaacgtcg tcgagccgga tggaactctt cgcatgacga tatcgaatca tgcggccatg
      121 ccggaccccg tcatcggcgg caagtcgtat ccactccgca ctggcacggg cggtgccggc
      181 gcagggatga tcttcttcaa cgacgaagga aacgagaacg gtggcctgac ctacaccgga
      241 cggaagacag cgactggata ttcagcgggt gccggtctca ccttcgatca gttcaatcag
      301 gatgagaccg tcacactgtc atatgacgac gagaaccgac agcggcgtgc ggggcttctg
      361 atagccgatc ggcccgatga gtcgattcag gcgttcgcag agagtgcgat ggtcttcaag
      421 cgtctgccgg atggtccggc aaaggtgcag cgcatgcagg agttccaggc caacgcgcgc
      481 aagcgcggcg tacttggcgg agtgtcgcgt ctatacgtag ggaaggatgg gagcaaggaa
      541 tcaatcgtca tgctggccga tccaaagggt cacccgcgga tcaaaatgac cgtggattcg
      601 ctcggtacgc cgaagctgga gtttctggac gcagctggga aggtgacgta cgaactgccg
      661 gatcggccgt cgacagcgcg ttccagttcg ccatcgcatt gatcaccagc gcaaacgtgc
      721 cctgcgtttc ccagcgccac atgggccgga tcgcgaacat gatcgcgtgc ccgcgtccca
      781 tgggtgcgtc cacgatcgcc ggtctgccgg cgggctcgtt gccggccgag agcaagccgg
      841 agatgacgag cgaatcgggg tcgctctgga aggccagcag gactcgcgcg tgcatgcgat
      901 ttgtctgcgc aatcgtggcg gagtcgagcg gacccgcata gtcgagtgtg tcgtacggcg
      961 cgacattcaa caacggagcc tgcttgaagt acacggggaa ctccggatga tcgtagccat
     1021 acagcaccgg gctcgcgcga ttcacgatgc gcgcgcgata aacactgccg cccctcgatc
     1081 gcacctgact caacggcatc gcactcactg tcggcgaaaa gccgagctcg gccaccagct
     1141 ggctcgtagc gccttcggtg atcaacagac ccccgcgctc gacgaactgt cgcagcgccg
     1201 cggcgccgtc caggcgcata ccaccgcgca tgtcgtcggt gtggtccagc tttcctatgt
     1261 tgggcgttag tgcggtcgtc ttccacggaa tcggcggccc aaccatcggc cggccgttca
     1321 acagcgacat cccaacggcc tggacgtgcg ggaatacaac gacgtcgaat ttctcgagcg
     1381 cgttcggttc cctgagagcc tgatcggaga tgtatgtgta cggcactcgc atgcggtcga
     1441 gcgcgtatcg tacccatccc tcgtcctgcg tctcgatcca cgtatgaacc agcgcaatgc
     1501 gcggaagcgt gatcggatgt gtcgcgatct ttatcacgtc ggaggcaacg gcgtcgacac
     1561 ctagcgacgc gatcgtgtca cgggcggcgg acgtgacgtt gctgatcagg aatgtgccag
     1621 ctggatattg cgcgccgccg
//
LOCUS       DATIMD010000173         4240 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3529284, whole genome shotgun sequence.
ACCESSION   DATIMD010000173 DATIMD010000000
VERSION     DATIMD010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4240
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3529284"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(129..431)
                     /locus_tag="VLI40_03925"
     CDS             complement(129..431)
                     /locus_tag="VLI40_03925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HSU96350.1"
                     /translation="MKQPAVYLLASAPRGTLYLGVTSNLVKRVWQHREGHAKGFTQRY
                     DIKTLVWYEQHRTMTSAIAREKSIKKWPRGWKLELVETTNPSWRDLWDEITSVTPV"
     gene            complement(618..1832)
                     /locus_tag="VLI40_03930"
     CDS             complement(618..1832)
                     /locus_tag="VLI40_03930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU96351.1"
                     /translation="MATTSSREIGATTGAAIKVLGAIAFCHLLNDMMQSLLPAIYPML
                     KTSYKLNFAQIGLITLAYQMTASMLQPLVGLYTDHRPQPYSLVAGMSFTLLGLLLLSR
                     AASFPALLVAASLIGVGSSVFHPESSRVARMASGGHHGFAQSMFQVGGNAGSAIGPLL
                     AAFIVLPFGQSSIAWFSAAALVGIMVLWNVGTWYSANRLVAVPSRRSAAADHVTLSRG
                     KVRFALLILMALLFSKYFYLASLTSYYAFYLINKFHVSVQSSQIHLFVFLGAVAAGTI
                     IGGPIGDRYGRKLVIWCSILGVLPFTLLLPYANLRWTEILSVVIGLVLASAFSAIIVF
                     AQELVPGKVGMISGLFFGLAFGVGGIGAALLGQLADHTSIDFVYKVCSYLPAVGLLTG
                     FLPNMKHVDVAA"
     gene            complement(1915..2328)
                     /locus_tag="VLI40_03935"
     CDS             complement(1915..2328)
                     /locus_tag="VLI40_03935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96352.1"
                     /translation="MVPPVAGTIFAVTLAFMLLFPFVRLSLAGSGEPETLLFLTKTDF
                     GVNIFALVLFLVPIVGVAASLALRESRALVADALLGLIGVVMIPLAILTVGHDAGRNA
                     ALTSHVSIGIGTILVSIMLLVVTISSGIAVLQGRR"
     gene            complement(2505..2918)
                     /locus_tag="VLI40_03940"
     CDS             complement(2505..2918)
                     /locus_tag="VLI40_03940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96353.1"
                     /translation="MPSETAHAASDVVTLVIENRGTIEAPVSMVSVAPRNHLSLARQT
                     AIPALAPGQRTTIQLPVVTAADGTECVSITISPAPVADPATARFLAAAIPDPDIRLGS
                     FGDLASAGFGAGLMGEMPWSKSIDSFASFRSPDSW"
     gene            3291..3926
                     /locus_tag="VLI40_03945"
     CDS             3291..3926
                     /locus_tag="VLI40_03945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012607273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HSU96354.1"
                     /translation="MTKPTAAISILAIALGACSQGAVQKEDTSSGAPPAVSGNAQTTA
                     TTQQPSGSNAMSFKLMSSAFVEGGNIPTKYTCSGEDTSPPLAWSDAPEGTRSFALIVD
                     DPDAPDPAAPKMTYVHWVAYNIPPTTTHLAEGAGKGAMPDGTGEGYNDWKKLAYNGPC
                     PPIGRHRYFFKLSALDTTLDLSRPTKSELEAAMKGHVLGTAQLMGTYQKTK"
     gene            4000..>4240
                     /locus_tag="VLI40_03950"
     CDS             4000..>4240
                     /locus_tag="VLI40_03950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96355.1"
                     /translation="MHRISFATSTAQQHILRAVLVIAALAIMPLTPLATAHAQHADTT
                     ALRHVLDSIADAHHGTVGYSVIDLDDGDRISRRGDE"
BASE COUNT          958 a         1318 c         1237 g          727 t
ORIGIN      
        1 acgccggtcg gcagcagatg gattcccgct ttcgcgggaa tgacgacggg cagatggatt
       61 cccgctttcg cgggaatgac gatctactgg cgcgggaatg acgatctacc gacgcgcgag
      121 cattaccatc acaccggcgt cacgctcgtg atctcgtccc aaagatcccg ccacgaaggg
      181 tttgtggtct caaccagttc cagcttccat ccgcgcggcc atttctttat tgacttctcc
      241 cgtgctatcg cgctcgtcat cgtgcgatgc tgctcgtacc acacgagtgt tttgatgtcg
      301 tagcgttggg tgaacccctt ggcgtgccct tcgcggtgct gccagacgcg ctttacaagg
      361 ttcgaggtga cgcccagata gagcgtgccg cggggagcac tcgcaagcag atagaccgct
      421 ggctgtttca caactcattt gatgcgagag ttcatgcaat gaactcggaa ggtatccggt
      481 gcaggactgt gcgggcgtac cgttcgtcgc gcgcctgtat cgagttcagt ccaccgcgga
      541 gtccgtaaac atggattccc gctttcgcgg gaatgacgac acgcaagttc ccgcattcgc
      601 gggaatgaca cagtgcccta cgccgccacg tccacgtgtt tcatgttcgg taaaaatccc
      661 gtgagcagtc cgaccgcagg tagatacgag cacaccttgt acacaaagtc gatgctcgtg
      721 tgatcggcca gctgtcccag gagcgccgca ccgattccgc ccacaccgaa cgcgagacca
      781 aagaacaggc cggagatcat tcctaccttt cccggcacca gctcctgcgc gaatacgatg
      841 atcgccgaaa atgccgacgc gagtacgaga ccgatcacca cgctcaggat ctcggtccag
      901 cgcagattcg cgtacggcag cagcaacgtg aacggaagca cgccgagtat ggagcaccag
      961 atcaccagct tgcggccgta tcggtcaccg atcgggccac cgatgatcgt accggcggca
     1021 actgcgccca gaaatacgaa caggtggatc tgcgagctct gcaccgacac gtggaacttg
     1081 ttgatcagat agaaggcgta atagctggtg agactcgcga gatagaaata cttggagaac
     1141 agcagcgcca tcagaatgag cagcgcaaac cgaaccttcc cgcgtgacag cgtaacatga
     1201 tcggccgcgg cgctgcggcg tgacggtaca gcaaccaatc tgttcgcgct gtaccacgtg
     1261 ccgacgttcc acagtaccat gatcccgacg agagcagcgg cggagaacca cgcgatgctc
     1321 gactggccga atggaagtac gatgaatgca gccagcagcg ggccgatagc cgagccggcg
     1381 tttccaccga cctgaaacat cgactgcgca aatccgtgat gtccaccgga cgccatgcgc
     1441 gccacgcgtg atgattcagg atgaaatacc gatgacccga cgccgatgag cgatgcggca
     1501 acgagcagcg ctgggaaact cgcagctctc gacaacagca acaggccgag cagggtgaag
     1561 ctcatccccg cgacgagcga gtatggttgc ggacgatgat cggtgtacag cccgaccagt
     1621 ggctgaagca tcgacgcagt catctgatac gccagcgtga tgagtcctat ctgcgcgaag
     1681 ttgagcttgt agctcgtctt cagcatcgga tagatcgctg gcaggagcga ctgcatcatg
     1741 tcgttcagca aatgacagaa tgcaatcgct cccaggacct tgatggccgc gcccgtggtc
     1801 gcgccaattt ccctgctact cgtggtcgcc aatcagttct cgcgtgtcgt caatcagttc
     1861 accacaatat cgcgagatgc atggccacaa aggcagtctc tttgatgccc gacgctaccg
     1921 tctgccctgc aggactgcga ttccggagct tatagtgacg acgagcagca tgatcgaaac
     1981 caggatagtc ccgatcccta tcgacacatg cgacgtcagc gctgcgtttc ttccagcatc
     2041 gtggccgacg gtcagtatcg cgagcggaat catcaccacg cctatcaggc cgagcagcgc
     2101 gtccgccacc agcgcgcggc tctcacgcag agccagcgac gccgctacgc ctacgatcgg
     2161 aaccaggaac aacaccagcg cgaagatgtt caccccgaag tccgtcttcg tcaggaagag
     2221 cagcgtttcc ggctctccgg agccggcgag ggacagccgc acgaacggaa agagaagcat
     2281 gaacgcgagc gtgacggcga atatcgtgcc ggcgactggt ggcaccatcg cgtgaaaatg
     2341 ccttggccgg ctggaacctg cgtactccac aactacctcc ttgactgttg acctgtcgaa
     2401 tcatcgtgca tgtgccgtgc tcgcgctagc ggagggatgc gcaacaagca aaaagggcgg
     2461 ccatcacagg ccgcccttga aactttacag cgtcaaacgg tacgctacca gctgtccggc
     2521 gacctgaagc ttgcgaagga gtcaatactt ttcgaccacg gcatctctcc cataagaccg
     2581 gcgccaaagc cggcgctcgc caagtcgcca aagctcccca gacggatatc cggatcgggt
     2641 atcgccgcgg ccaggaatcg cgcggtagcc ggatcggcga cgggtgccgg actgatggtg
     2701 atcgaaacgc actcggttcc atcagctgcg gtaacgaccg gaagttgaat cgtggtgcgc
     2761 tggccgggag cgagagcggg tatcgcggtc tgtctggcga gactcaaatg attacgtggt
     2821 gcgaccgaaa ccatcgaaac aggggcctcg atcgttccac ggttctcgat caccagcgtg
     2881 accacatcag aagcagcgtg tgccgtctcg gatggcatga cggccgagat tatggcgagc
     2941 gaataatcgc cacagtcgga gatgcagtgt cgcgccgatg agctggcgga ccgagtcctg
     3001 acggacggat gagcgggtgc cggctgctcg ggcacgcgaa cggcagaggt cgaacgccgg
     3061 acgttccgct gggcaaggag ctgggaaggt acgaggagcg aggtcgcggc aaccgccacc
     3121 agcgccaatc caaaagtgcg catacaatac cgaggttgaa gtcttcccgg ataagtgtcg
     3181 gctggatcgg ccgtgacttg accgccgcat cacaccgccg cagctacacg gaaattcttc
     3241 gctgtcagac aaggagcttc tggcacacta cacgcagcaa ttcctcggcc atgaccaaac
     3301 ccacggcggc aatcagtatc ctcgctatcg cgctcggtgc gtgcagccag ggcgcagttc
     3361 aaaaggagga cacttcctcc ggtgcgccgc ctgctgtgtc cgggaacgca cagacaacag
     3421 caacaacgca acaaccatca gggagcaacg caatgtcgtt caaactcatg tcgtccgcgt
     3481 tcgtcgaagg tggcaacatc ccgaccaagt acacctgttc aggcgaggac acctcaccgc
     3541 cgctcgcgtg gtccgacgca ccggaaggca cccgcagctt cgcgctcatc gtggacgatc
     3601 ccgacgcacc agatccggcc gcgccgaaaa tgacgtatgt ccactgggtg gcgtacaaca
     3661 tcccgccgac aacgactcac ctcgcggaag gagccggcaa gggcgcgatg cccgacggaa
     3721 ccggtgaggg ctacaatgat tggaagaagc tggcatataa tggcccctgc cctccgatcg
     3781 ggcggcaccg ctacttcttc aagctgagcg cgctcgacac gacgctcgac ctttcacgcc
     3841 caaccaagtc cgaactcgag gccgcaatga aaggccatgt gctaggcacc gctcagctga
     3901 tgggcaccta ccagaagacc aagtagaagg ccagtagcgg ctgcatagca gccttgcaat
     3961 cgtggcggtc cggcgctcca cgcgcgacat tataccgcca tgcacaggat ctcattcgca
     4021 acgagcacgg cgcagcagca catccttcgc gccgtgctcg tgattgccgc actggcaatc
     4081 atgccgctca cgccgctcgc gaccgctcac gcacaacacg cagacactac agcgctgcga
     4141 cacgtactgg actccatcgc cgatgcgcac cacggcacgg ttggctacag cgtgatcgat
     4201 ctcgatgatg gcgatcgcat ctcgaggcgc ggagacgaaa
//
LOCUS       DATIMD010000174         3778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_643994, whole genome shotgun sequence.
ACCESSION   DATIMD010000174 DATIMD010000000
VERSION     DATIMD010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3778
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_643994"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..551
                     /gene="ybeY"
                     /locus_tag="VLI40_03955"
     CDS             108..551
                     /gene="ybeY"
                     /locus_tag="VLI40_03955"
                     /inference="COORDINATES: protein motif:HMM:TIGR00043.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HSU96356.1"
                     /translation="MSVAVDVSRDGVRISLSEQRVREIVRSVCRRERVGEALISVAFI
                     RNAAIARMNRKFLGHTGATDVITFELGDPRAKSARRAIVGDIYIAPDVARRNAIENGV
                     GVREELTRLVVHGTLHVLGYTHAEGSHRTTGDMWRRQEEILAAIL"
     gene            535..1599
                     /gene="meaB"
                     /locus_tag="VLI40_03960"
     CDS             535..1599
                     /gene="meaB"
                     /locus_tag="VLI40_03960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0015819 - lysine transport [Evidence IEA];
                     GO_process: GO:0015822 - ornithine transport [Evidence
                     IEA];
                     GO_process: GO:1903826 - L-arginine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HSU96357.1"
                     /translation="MPQSFDALVADFEAGKAAALARAISIVENHRPGYDELMTRLHPH
                     IGRAQRLGITGPPGAGKSTVTNLIVQSLRQEGHTVGVIAVDPTSPFTGGALLGDRVRM
                     ESVALDPGVYIRSMATRGSLGGLSARTAEVADVLDAFGFDRIIIETVGVGQTELDIAR
                     TADTTVVVLVPESGDSIQTLKAGVMEIADIFVVNKGDRPGADRLRNDIELMLGLRRGS
                     TGNVPAHHGVQLKSFNPIRIAREAARAEDPDRWTPPVLGTIASRGEGIDLLLAAVGRH
                     FRYLETSGALKGRRRIRLRNQVAEVVAERVRNRLWEDPETNAWLDAQLDLLESGAATP
                     FTVADELLQRSGPLLTGVET"
     gene            1596..3260
                     /locus_tag="VLI40_03965"
     CDS             1596..3260
                     /locus_tag="VLI40_03965"
                     /inference="COORDINATES: protein motif:HMM:TIGR00641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HSU96358.1"
                     /translation="MTTAEMLELDRLREEVAQWRARFDAAKKRNALFANSGDVVDPVY
                     TALDIAGDGSALELPGDYPFTRGIHATGYRGKLWTMRQFAGFGTAPETNARYKYLLSH
                     GQTGLSVAFDFPTLMGYDSDHPRSEGEVGKCGVAISSLADMETLFEGIPLDKVSTSMT
                     INGPAVILFAFYVAAAEKQGVDIKDLRGTIQNDILKEYMAQHAWVYPIEPALRLIVDN
                     FEWSAEHVPLWNTISISGYHIREAGATAAQELAFTLADGFTYVERGLARGLDVDDFAP
                     RLSFFWDIHNDFFEEIAKLRVARRIWARHLKERFGAKDPRSLIMRFHSQTAGVTLTAQ
                     QPMNNIVRVAYQAMAAVLGGTQSLHTNSMDETLALPTEQAVQVALRTQQVLAYETGVP
                     NVADPLGGSYYVEALTDKLEQEAEALFEQIAEVGGVVHGLETGWLQRKIAESSSRQQW
                     EIEQHRRTIVGVNEFVTEEGELTIPLLKVSELAERDQRARMAQMRASRDNALVESRLI
                     ALRDASRTDANLMPFILDCARAYCTLYEIRAAMEEVFGAYREPVFF"
     gene            3279..3689
                     /locus_tag="VLI40_03970"
     CDS             3279..3689
                     /locus_tag="VLI40_03970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HSU96359.1"
                     /translation="MRPIRVLVAKPGLDGHDRGAKVVAAALRDAGMEVIYTGLHQTPE
                     MIATAAIQEDVDVVGLSILSGAHMTLIPRVLDLLHADGRDDILVTGGGIIPREDMDAL
                     EARGTGKLFGPGTPTSELVDYIHDWFEARESQTA"
BASE COUNT          714 a         1139 c         1236 g          689 t
ORIGIN      
        1 gagcagttcg tgcgcatcct cacgggcatg ttccacgggc ggatcgaata tccgtcgccg
       61 gctcggcctc ttgcgattgc gccgaaaccc gattcgcgcg cgagcgcgtg agcgtagccg
      121 tcgacgtttc ccgcgatgga gtgcgcatct cgctgtcgga acagcgggtg cgcgagatcg
      181 ttcgctccgt atgtcgtcgg gagcgagtgg gtgaggcact gatttcggtc gcgttcatac
      241 gcaatgccgc aatcgcgcgc atgaacagga agttcctggg tcacaccggc gcgacggacg
      301 tcatcacgtt cgagctcggc gatccgcgcg cgaagtcggc gcgccgtgcc atagtgggtg
      361 acatctacat cgcgccggac gtcgcacgcc gcaacgcaat cgaaaatggc gttggtgtgc
      421 gtgaggagct cactcgtctc gtagttcatg gcacgctgca tgtactcgga tacacgcacg
      481 cggaaggatc gcatcgcacg accggcgaca tgtggcgccg tcaggaggaa atccttgccg
      541 caatcctttg acgcgctcgt cgcggatttc gaagcgggca aggccgcggc tctagcccgc
      601 gcgataagca tcgtcgagaa tcacaggccg ggatatgatg agctgatgac gcggctgcat
      661 ccgcacatag gtcgtgcgca gcgcctcgga atcacgggtc cgccgggcgc gggcaagagc
      721 actgtcacca atctcatcgt gcagtcgctc cggcaggaag gacacacggt cggcgtgata
      781 gcagtcgatc ctacgtctcc gttcaccggt ggtgcgctgc tgggtgaccg tgtgcgcatg
      841 gaatccgttg cgctcgatcc cggtgtctac atacgatcga tggcgacacg cggctcgctc
      901 ggcggtcttt ccgcgcgtac tgcggaagtt gcggacgtgc tggacgcgtt cggcttcgac
      961 aggataatca tcgagacagt gggtgtaggg cagacagagc tcgacatcgc gcgcaccgcg
     1021 gatacaacgg tggtcgtgct tgttcctgaa tcgggcgatt cgatccagac gttgaaggca
     1081 ggcgtaatgg agatcgccga tatcttcgtg gtgaacaagg gcgatcgtcc gggcgccgat
     1141 cggctgcgca acgatatcga gttgatgctg ggcctgcgac gcgggtcgac cggcaacgtt
     1201 cctgcgcatc atggcgtgca gctcaagagc ttcaatccga tccgaatcgc gcgcgaggct
     1261 gcccgtgcgg aggatcccga ccgctggaca cccccggtac tgggcacgat cgcgtccagg
     1321 ggcgagggta tcgatcttct gctggcggcc gtggggcgtc actttcgtta tcttgagaca
     1381 tcaggcgctc tcaaggggcg ccggcgtatc cgcctccgga atcaggtcgc tgaagtggtg
     1441 gccgagcggg tgcgcaacag gctctgggaa gacccggaga ccaacgcgtg gcttgatgcg
     1501 cagctcgatc tgctggaatc cggagcggca acaccgttca ccgttgcgga cgaactgctg
     1561 cagcggagcg gtccattgtt gactggagtc gaaacatgac gacggcggag atgttggagc
     1621 ttgacagact gcgtgaggaa gtcgcgcagt ggcgtgcacg gttcgacgcc gcgaagaagc
     1681 gcaacgcgct attcgcgaat tcgggcgacg tcgtcgatcc cgtttacacg gcgctcgaca
     1741 tcgccggcga cggctcggca ctggagcttc ccggcgacta tccctttaca cgcggcatac
     1801 acgcaaccgg ctatcgcggc aagctgtgga cgatgcggca gttcgccggg ttcggtacgg
     1861 cgcccgaaac caacgcgcgc tacaagtatc tcctttcgca cggtcagacc ggtctttcgg
     1921 tagcgttcga ctttcccaca ctgatgggct acgactcgga tcatccgcgg tccgaaggcg
     1981 aggttggcaa gtgcggtgta gcgatctcga gcctcgccga tatggagacg cttttcgagg
     2041 gaattccgct cgacaaggtt tcgacgtcga tgacgatcaa cgggcccgcg gtgatcctgt
     2101 tcgcgttcta tgtcgcggcc gcggagaagc agggcgtcga catcaaggac ctgcgcggca
     2161 cgatccagaa cgacatcctc aaggagtaca tggcgcagca cgcatgggtc tatcccatcg
     2221 agcccgcgct gcgtctcatc gtggacaatt tcgagtggtc ggccgagcac gttccactgt
     2281 ggaacacgat ctccatctcc ggctatcaca tccgcgaagc cggcgcgact gccgcgcagg
     2341 agctggcatt cacgctcgcc gatggattca cctatgtcga gcgcggcctc gcgcgcggtc
     2401 tggacgtgga cgacttcgcg ccacgtctgt cgttcttctg ggacatccac aacgacttct
     2461 tcgaggagat agcgaagctg cgcgtcgcgc ggcgcatctg ggcgcggcat ctcaaggagc
     2521 gcttcggtgc caaggatccg cgctcgctca tcatgcggtt ccactcgcag accgctggag
     2581 tgacgctcac cgcgcagcag ccgatgaaca acatcgtgcg cgtcgcgtat caggcgatgg
     2641 ccgccgtgct tggcggcact caatcgctgc acacaaattc gatggacgag acgctcgcgc
     2701 tgcctaccga gcaggcggtg caggtcgcac tacgcacgca acaggtgctc gcgtacgaga
     2761 ccggcgttcc aaacgtcgcc gatccgctgg gcggctccta ctatgtcgaa gctctgactg
     2821 acaagctgga gcaggaagca gaggcgctgt tcgagcagat cgccgaagtt ggcggcgtcg
     2881 tgcacggatt ggagacgggc tggctgcagc gcaagatcgc cgagtcgtct tcacgccagc
     2941 agtgggagat cgagcagcat cgccgcacca tcgtcggcgt gaacgagttc gtcacggaag
     3001 agggtgagct cacgattcct ctgctgaaag tgagtgaact tgcagagcgt gaccagcgcg
     3061 cgcgcatggc gcagatgcgc gcgtcacgcg acaacgcact cgtggaatcg cgtctcattg
     3121 cgctgcgtga tgcgtcgcgc accgacgcca atctcatgcc cttcatactc gactgcgcgc
     3181 gcgcctactg tacgctgtac gagatacgcg ccgccatgga agaagtattt ggcgcgtatc
     3241 gcgagcccgt gttcttctaa cccttgcaat cgaaagagat gcgccctatc cgagtgctag
     3301 tcgcgaagcc aggcctggac ggccacgacc gtggcgcgaa agtagttgcg gccgcgctgc
     3361 gcgacgcagg gatggaggtc atctacaccg gcctgcatca gactccggaa atgatcgcca
     3421 cggcggcgat ccaggaagat gtcgacgtgg tcggactttc cattcttagc ggtgcgcaca
     3481 tgacgctcat tccgcgcgtt ctggatctgc tgcatgccga cggacgcgat gacatcctgg
     3541 tgactggcgg cgggatcatt ccgcgcgaag acatggatgc gctcgaggct cgcggcaccg
     3601 gcaagctatt cggacccgga acgccgacca gcgagctcgt ggattacatc cacgactggt
     3661 tcgaggcccg cgaaagccag acagcgtgac gtcgcggcta cagtcgctgg acgccgatct
     3721 tcgggagctc gagaacaaac tcgagcaggg cggcggcgca aggaaaatcg agaagctg
//
LOCUS       DATIMD010000175         4022 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2084799, whole genome shotgun sequence.
ACCESSION   DATIMD010000175 DATIMD010000000
VERSION     DATIMD010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4022
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2084799"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(211..810)
                     /gene="kdpC"
                     /locus_tag="VLI40_03975"
     CDS             complement(211..810)
                     /gene="kdpC"
                     /locus_tag="VLI40_03975"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HSU96360.1"
                     /translation="MIRRQIRAAISVTVVLMIVTGFAYPMLVTGIAQLVFPGQANGSL
                     ITENGRVIGSRLIGQRFAGQQYFHPRPSAAGAGYDPLASGGTNKGPTDRKLADTLIAN
                     TVDSVIASDGAHRGGVPADLATSSGSGLDPDISPASAMVQIARVARARNGDSATVAEL
                     VARHIQGRQFGLLGEPRVNVLSLNLALDSARTLGTGSKQ"
     gene            complement(807..2858)
                     /gene="kdpB"
                     /locus_tag="VLI40_03980"
     CDS             complement(807..2858)
                     /gene="kdpB"
                     /locus_tag="VLI40_03980"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HSU96361.1"
                     /translation="MATTRRTLLDPSIAGAAVIEAFRKLNPRHMVRNPVMFVVFIGSV
                     LSTIAVAREPTNVGFNAQLAVWLWFTVLFANFAEAMAEGRGKAQADSLRRSRHETQAR
                     RLRNPANRDEVDLVSAEGLRKGDAVLCLPGDVIPGDGEVIDGVASVDESAITGESAPV
                     IRESGGDRSAVTGGTRVLSDYLVIRITANPGETFMDRMIALVEGASRQKTPNEIALTM
                     LLSGLTIVFLMAVVTLAPFASYSGVSVSIPVLVALLVCLIPTTIGGLLSSIGIAGMDR
                     LVQHNVIAMSGRSVEAAGDVDTLLLDKTGTITLGNREAVELYPVSGVALEYLADRAQL
                     ASLPDETPEGRSIVVLAKERFGLRGRDVGAERHMTFVPFSATTRMSGVDLRDGELRKG
                     ASDAVGRYVTQAGGAMPRDIGDIVERIAREGGTPLVVTERNGAPPRVLGAIYLKDIVK
                     GGMRERFDRLRAMGIRTVMITGDNPLTAAAIAREAGVDDFLAEAKPEDKLELIRREQN
                     GGRLVAMTGDGTNDAPALAQADVGVAMNTGTQAAREAGNMIDLDSNPTKLIEIVEIGK
                     QLLMTRGSLTTFSIANDVAKYFAIIPAIFLATFPVLGVLNVMRLHSPQSAILSAVIFN
                     ALIIVALIPLALRGVKYRPSSAAQILRRNILIYGVGGLIVPFIGIKVIDVMLVFAGAV
                     S"
     gene            complement(2858..>4022)
                     /gene="kdpA"
                     /locus_tag="VLI40_03985"
     CDS             complement(2858..>4022)
                     /gene="kdpA"
                     /locus_tag="VLI40_03985"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HSU96362.1"
                     /translation="LFVQQGVLQNFKPYLTVGTLDGAKQILAMGPVASQEAIKQLGTN
                     GGGFFNANAAHPFENPTPWTNFLQMIAIFIIPAGSTYWFGRAVKHQNHGWALWAAMFV
                     MFIGGTAVTYTFEAAGNPIHAAAGVDVHAASGSVAQSGGNMEGKEVRFGIAASALYAT
                     VTTDASCGAVNAMHDSFTPIGGLVPIVNMQLGELIFGGVGAGLYGMLNMVILTVFIAG
                     LMVGRTPEYLGKKIQSREVRMVMLYVLAAPIIVLGMTGIAAVLPAGLGGRNNMGPHGL
                     SEILYAFTSTFANNGSAFAGLTGSTYFYNTLFGMVTLVGRFALIVPVLALAGFLSERK
                     MVAESAGSFPVDTPLFVLLLIGVILIVGALTFFPVLSLGPIVEHFLMHSGRLF"
BASE COUNT          787 a         1281 c         1205 g          749 t
ORIGIN      
        1 tgccgacgcc ggcgaacgat ccgatgtaaa ccttgagctt gccgcgctcg cgactctcga
       61 gcaagcgcag aaagtcagtc gctccgggcg tcgactcggt gccgattgct tcgccgttac
      121 tggaggttat catcccgatc cctcacatct ttacgagaag cgccagattg acccggctct
      181 ccgtcttgcg aagatcgggc gaccatccca tcactgtttg ctcccggtgc cgagagttcg
      241 cgcggaatcg agcgcaagat tcagagagag cacgtttacg cggggctcgc cgagcaaccc
      301 aaactggcgt ccctgaatgt ggcgagcgac gagctcggcg accgttgcgg aatcgccgtt
      361 gcgggcacgc gctacacgcg caatctgaac catcgcgctc gccggcgaga tgtcaggatc
      421 cagtccggac ccggatgaag tcgccaggtc agcggggacg ccgccccgat gcgcgccgtc
      481 acttgcaatg accgaatcca ccgtattggc aatgagcgtg tctgcaagct tgcggtctgt
      541 cggccccttg ttggtgccac cgctggcgag cggatcgtag ccggccccgg cggctgatgg
      601 acgcggatga aaatattgct ggccggcgaa acgctgacca atgagcctgc ttccgattac
      661 ccggccattc tcggttatga gtgaaccgtt ggcctgaccc ggaaatacaa gttgtgcaat
      721 tccggtcacg agcatcgggt atgcgaatcc tgtgacaatc atgagaacga ccgtcaccga
      781 aatggcggcg cgaatctgcc ggcggatcaa gagaccgctc cggcgaacac cagcatcaca
      841 tcgatgacct tgatcccgat gaaaggcacg atgagcccac ccacgccgta gatcaggata
      901 ttgcgtcgca ggatctgcgc ggcggacgac gggcgatact ttactccgcg cagggccagt
      961 ggtatcagag ccacaattat caatgcattg aatatcaccg cactgaggat cgcggactgc
     1021 ggggaatgca gtcgcatcac gttgagcacg ccgagcacgg ggaatgttgc gaggaagatc
     1081 gcaggtatga tggcgaagta cttcgcgacg tcgttcgcta tcgagaacgt cgtgagcgat
     1141 ccccgcgtca tcagcagctg cttgccgatc tctacgatct cgatcagctt ggtcggattg
     1201 gagtcgagat cgatcatgtt tccggcttcg cgtgcggcct gtgtgcctgt gttcatggcg
     1261 acaccgacgt cggcctgcgc gagtgctggc gcgtcgttgg ttccgtcacc ggtcatggcg
     1321 acgagccgtc cgccgttctg ctccctccgg atgagctcga gtttatcctc cggctttgcc
     1381 tctgcgagaa agtcatccac accagcctcg cgcgcgatcg ccgctgcagt gagtggattg
     1441 tcgccggtaa tcatcacagt ccggattccc atggcacgca ggcggtcgaa acgctccctc
     1501 attccgccct tgacgatgtc cttgagatag atggcgccaa ggacgcgcgg cggggcgcca
     1561 tttcgctcgg ttacgacgag aggagtgccg ccttcgcgcg cgatgcgctc gacgatatcg
     1621 ccgatgtcgc gcggcattgc gccgccggcc tgcgtcacgt accgtccgac cgcgtcggat
     1681 gcgcccttgc gcagttcacc gtcgcgcaga tcgaccccgc tcattcgcgt cgtggcggag
     1741 aagggaacga acgtcatgtg ccgctcggcg ccgacgtcgc gtcccctgag cccgaaccgc
     1801 tccttcgcaa gcacgactat gctgcgccct tccggcgtct catccgggag cgacgccagc
     1861 tgagctcgat cggcgagata ctcgagcgcg acacccgaca ccggatagag ctcgaccgcc
     1921 tcgcgattcc cgagtgtgat cgtgccggtc ttgtccagaa gaagggtgtc gacgtcgccg
     1981 gcggcttcga ccgatcgtcc gctcatcgcg atcacgttat gctgcaccag ccggtccatg
     2041 ccggcaatcc cgatcgacga cagcaagccg ccaattgtcg tcggaatgag gcagacgaga
     2101 agtgcgacaa gcaccggaat gcttaccgac acgccgctgt agcttgcaaa tggggcgagc
     2161 gttacgaccg ccatcagaaa cacgatcgtc aatcccgaga gcagcatcgt gagcgcgatc
     2221 tcgttcggcg tcttctggcg cgacgcgcct tcgaccagcg ctatcattcg gtccatgaag
     2281 gtctcgcccg gatttgcggt gatccgaatc acgagatagt ccgaaagcac tcgcgtgcca
     2341 cccgtgaccg ccgatctgtc gccgccggat tcgcggatga ccggcgccga ctcgcccgtg
     2401 attgccgatt cgtcgaccga tgcaactccg tcgatcacct cgccatcgcc gggaatcacg
     2461 tcacctggca gacagagcac cgcatccccc ttccgcagcc cttcggcaga aacgagatcg
     2521 acctcgtcgc gattcgccgg attccggagt cgccgggcct gcgtttcatg acgcgagcgg
     2581 cgcagtgaat cggcctgcgc cttgccgcgt ccttccgcca ttgcttcagc gaagtttgcg
     2641 aacagcaccg tgaaccagag ccatactgcc agctgcgcgt tgaagcccac gtttgtcggc
     2701 tctcgggcca ccgcgatggt gctgagtaca ctgccgatga acacgacgaa catcaccgga
     2761 ttccgcacca tgtgccgcgg attcagcttc cggaacgcct cgatcaccgc agcgccggcg
     2821 atgctcgggt cgagcagggt gcgtctggtc gtggccatta gaaaagcctc ccggaatgca
     2881 tgaggaaatg ctcgacgata ggtccgagtg acagaacagg gaaaaaggtc agcgcgccca
     2941 cgatgaggat cacgccgatc aggagcagca cgaagagggg tgtgtcgaca ggaaagctgc
     3001 cggcagattc ggcgaccatc ttgcgctcgg atagaaagcc cgcgagcgcg agcacgggta
     3061 cgatcagcgc gaatcgtccg accagcgtca ccattccaaa cagcgtgttg tagaagtagg
     3121 tcgagccggt caggccggcg aacgcacttc cgttgttcgc gaacgtcgat gtgaacgcat
     3181 agagaatctc gctcaggccg tgtggtccca tgttattgcg cccgccgagt ccagcgggca
     3241 gcacagccgc aatgccggtc atcccaagta cgatgatcgg cgccgcgagt acgtacagca
     3301 tcaccatgcg tacttcgcga ctctggatct tcttgccgag atactccggc gtgcggccaa
     3361 ccatcaggcc ggcgatgaac actgtcagga tcaccatgtt gagcattcca tacaggccag
     3421 cgccgactcc gccgaagatg agctcgccaa gctgcatgtt cacgatgggc accaatccgc
     3481 cgatcggcgt gaatgaatca tgcatggcgt tgactgcgcc gcatgacgcg tcggtcgtaa
     3541 ccgtcgcgta cagcgccgag gccgcgatac caaagcgcac ttccttgcct tccatgtttc
     3601 cgccggactg tgccacgcta cccgacgctg catgcacgtc cacacctgca gcggcatgta
     3661 tcggattacc cgccgcttcg aacgtgtagg taaccgcggt gccgccgatg aacatgacga
     3721 acatcgcggc ccacagcgcc catccgtggt tctgatgctt caccgctcgg ccgaaccagt
     3781 atgtcgagcc agccggtatg atgaagatcg cgatcatctg caggaagttc gtccacggcg
     3841 tcggattctc gaacgggtgc gcggcgttcg cgttgaagaa accaccgccg ttcgtgccga
     3901 gttgcttgat cgcttcctga ctcgccacag gtcccatggc caggatctgc tttgcaccgt
     3961 cgagtgtccc gacggtcagg tacggcttga agttctgaag aacgccctgc tgcacgaaca
     4021 gg
//
LOCUS       DATIMD010000176         5701 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4687568, whole genome shotgun sequence.
ACCESSION   DATIMD010000176 DATIMD010000000
VERSION     DATIMD010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5701
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4687568"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1472
                     /locus_tag="VLI40_03990"
     CDS             <1..1472
                     /locus_tag="VLI40_03990"
                     /inference="COORDINATES: protein motif:HMM:NF039390.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96363.1"
                     /translation="IDSEQLEAGDALDDNFRAMAADEIERFRREIVERSGDPRTAESI
                     TDQELLREVMNTVGKPNTLGASIRCVVSVSMLTEGWDANTVTHVLGVRAFGTQLLCEQ
                     VIGRALRRQSYDLNEEGLFNVEYADVLGIPFDFTAKPVVAPPQPPRETVQVRAVRPDR
                     DALEIRFPRVAGYRVELPNERLTATFTADSTLVLTPDMVGPTRTRNQGIIGEAVDLSL
                     DHLNDMRQSTLLFELTKRLLDTKYRDADSQPRQHLFMQLKRIVREWLENHLECKGGTY
                     PALLMYQDLADMACNRITRAITEAFAGERPIKAVLDSYNPIGSTAHVRFGTSKAHWQT
                     SADRCHINYVVLDSDWEAEFCRVVEAHPRVRSYVKNHNLGLEVPYRYGSEIRRYLPDF
                     IVRVDDSRGDADLLHLIVEIKGYRREDAKEKKSTMDTYWVPGVNNAGTFGRWAFAELT
                     EMYGIESDFEARVAGEFDRMIAQAAPEFLTAGISLAGGV"
     gene            1642..2679
                     /locus_tag="VLI40_03995"
     CDS             1642..2679
                     /locus_tag="VLI40_03995"
                     /inference="COORDINATES: protein motif:HMM:NF014691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HSU96364.1"
                     /translation="MRKLAAASRQLAELKGVSASIPNREILINTLGLQEAKDSSAIEN
                     IVTTHDELFRESLLTEDPGSPASKEVLRYRRALQVGFDLVQEQGVLTNKHILRIQEQL
                     VLNDAGFRHVPGTTLKDQDNRVVYTPPDPASVVPMMTELERFINDEHLLAVDPLIRMA
                     LIHHQFESIHPFYDGNGRTGRIINVLFLVKARLLDTPVLYLSRHIIRTKADYYRLLQA
                     VRDEDAWEEWVMYMLTAVEETAREGIATVDAIKRALLDMKHRIRAQHPRMYSQDLMNN
                     LFSHPYTKIQFVEQDLGVSRITATKYLDTLTESGFLRKHRIGRSNFYVNPALYEILTG
                     EALQPPAGTSP"
     gene            2697..5525
                     /locus_tag="VLI40_04000"
     CDS             2697..5525
                     /locus_tag="VLI40_04000"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HSU96365.1"
                     /translation="MAKKSGSAQRTVETLKHDEATRKNIPTAEYQSVLEKNAEAPVRV
                     AYERRNRDLDPQLVWRGKDEQDWSDLVVHAPPIYIQEKVHPKALIDDLLRQTREAKHE
                     AGELPADLFADFNGIPKGVDKTEFYQHDQNWSNRMILGDSLQVMSSLAEREGLRGKVQ
                     CIYLDPPYGIKFNSNFQWSTTSRDVKDGNAAHITREPEQVRAFRDTWRDGIHSYLTYL
                     RDRLTVARDLLTESGSIFVQIGQSNCHLIRSLCDEIFGVENFISQIVFAKTASATSEY
                     LSGTYDVLVFYARSREHLKYHQPLMSKQIGGTGADAYKRVRLPNLSERALTNAESKRP
                     DSLPTDARVFRIDNLTSQSVGRDKGEGAASWFPVQFEGKTLRPSEKVRWKTNQVGMAR
                     LAEASRLRSTIKGLYYVRYLDDFAASSEDNVWADTGIAGFASEKRYVVETSEKVVQRC
                     VLMTTDPGDLILDPTCGSGTTATVAEQWGRRWITIDTSRVALALARARIMGARYAYYL
                     LADSRDGQLKEAEVTRAAPSSQPTRGNIRQGFVYERVPHITLKSIANNAEIDVIWEKW
                     QAVLEPLREKLDATLKKNWQEWEIPRETDANWSADARRLHAEWWKARIARQTEIDASI
                     AAKAEFELLYDKPYQDNKKVRVAGPFTVESLSPHRVLGVDEDDELIDHVSESGDEYLA
                     TQSFPQMVLENLRTAGVQQAHKDSRIAFTSLTPWPGDLVAAEGRYTEGEGASAVERRA
                     AIFIGPEYGTVTRPDLVQAAKEAGDADFDVLIACAFNYEALTTEFNKLGRIAVLKARM
                     NADLQMADDLKNTGKGNLFVIFGEPDITLIPADNRRVRVKVNGVDVFHPGTGEVRSDG
                     PDGIACWFIDTDYNEESFFVRHAYFLGANDPYGALRTTLKAEINEEAWATLHSDTSRP
                     FEKPKSGRIAVKVINHLGDEVMKVFRVQ"
BASE COUNT         1229 a         1706 c         1718 g         1048 t
ORIGIN      
        1 tcatcgacag cgagcaattg gaggccggcg acgcgctgga cgacaacttc cgcgcaatgg
       61 ccgccgacga gatcgagcgg ttccggcgcg agatcgtcga gcggtcgggc gatccccgca
      121 ccgccgagag catcaccgac caggagctgc tccgcgaggt catgaacacc gtcggcaagc
      181 cgaacacact tggcgcgtcc attcgatgcg tggtctccgt ctcgatgctc accgagggct
      241 gggacgcgaa caccgtcacg cacgtgctcg gcgttcgcgc gttcggaacg cagctgctct
      301 gtgagcaggt gatcggacgt gccctgcgcc ggcagtcata cgatctgaac gaagaggggc
      361 tgttcaacgt cgagtacgcc gacgtgctcg gcattccatt cgacttcacc gccaagccag
      421 tggttgctcc accgcaacca ccacgcgaga cagtgcaggt gagggcagtg cggccggacc
      481 gcgacgctct cgagattcgt tttccgcgcg tcgcgggtta tcgggtggag ctgccgaacg
      541 agcgactcac ggcgacgttc actgccgact ctacgctggt gctcaccccg gacatggttg
      601 ggcccacccg aacgcgaaac cagggcatca tcggggaagc ggtcgatttg agtctcgatc
      661 atctcaacga tatgcgtcag tccacgctgc tttttgagct gacaaaacgc ctgctcgaca
      721 cgaaatatcg tgatgcggat tcgcagccga ggcagcacct gttcatgcag ctcaagcgca
      781 tcgtgcgtga atggctggag aatcacctcg agtgcaaggg cggcacttat ccggcgctcc
      841 tcatgtacca ggacctcgcg gacatggcct gcaaccgaat cacgcgggcg atcacggagg
      901 ccttcgcggg agagcgcccg atcaaggcag tcctggattc gtacaatccg atcgggtcca
      961 ctgcgcacgt gcgcttcggc acctcgaagg cgcactggca gacaagcgcc gatcgctgtc
     1021 acatcaacta cgtggtgctg gacagcgact gggaggccga gttctgtcga gtggtcgagg
     1081 cgcatccgcg ggtgagatca tacgtgaaga atcacaacct cggtctcgag gtgccctatc
     1141 ggtacggctc cgagattcgc cgctatctgc cggatttcat tgtgcgagtg gacgacagcc
     1201 ggggcgacgc cgacctgctg cacctcatcg tcgagatcaa gggataccgg cgagaagatg
     1261 cgaaggagaa gaagtcgacg atggacacgt attgggtgcc gggcgtgaac aacgcaggca
     1321 cgtttggccg gtgggcattc gccgagctca ccgagatgta cgggatcgag tccgacttcg
     1381 aggcgagagt ggccggcgag ttcgacagaa tgattgcgca ggccgcgccg gagtttttga
     1441 cggcaggcat ttccttggca gggggcgttt gagggtggat ggatgcaaga aagaagggtt
     1501 ttctatacac gtcgccattg acatgtatag aatatcggta tttcctatac atatcatgct
     1561 cctgagctcg ctcgcatgac cgggcccggt ccgcactcgc tgaggaaact ctcggcggat
     1621 cgattcgaca ccacgccaat cttgaggaag ctggcagccg caagccgcca gcttgccgag
     1681 ctcaagggtg tgtccgcctc aattccaaat cgcgaaattc tgatcaacac cttgggcctg
     1741 caggaagcca aggatagttc cgcgatcgag aacatagtca cgacgcacga tgagctcttt
     1801 cgcgagtcgc tcttgacgga ggaccccgga agtcccgcgt ccaaggaggt cctgcgatat
     1861 cggcgggctc tgcaggtggg cttcgacctg gtgcaggagc agggcgtcct caccaacaag
     1921 cacattctga gaatccagga gcagctcgtt ctgaacgacg ccgggtttcg gcacgtaccg
     1981 ggaacgacgc tcaaggatca ggacaaccgg gtggtctata cgccacccga tcccgcgtcc
     2041 gtcgtaccca tgatgacgga gctcgagcgg ttcatcaacg acgagcatct gctcgcagtc
     2101 gatccgctca tcaggatggc gctcatccac catcagttcg agagcatcca tcccttctac
     2161 gacggcaacg gacgtacggg ccggatcatc aacgttctct ttctcgtcaa ggcgagactg
     2221 ctcgacacgc cggtgctgta tctgagccgt cacatcattc gcacgaaggc cgactattat
     2281 cgactgctgc aggcagtgcg cgatgaagat gcatgggagg agtgggtgat gtacatgttg
     2341 accgccgtcg aggagacggc acgcgaggga attgcaactg tcgatgcgat caagcgagcg
     2401 ttgctcgaca tgaagcatcg tatccgggcc caacaccctc gcatgtacag ccaggacctc
     2461 atgaacaacc tcttctcgca tccttacacg aagattcagt tcgtggaaca ggacctcggc
     2521 gtctcgcgga tcacggcaac caaatatctg gacacactca ccgagagtgg cttcctccgt
     2581 aagcatcgga tcggacgttc caacttctac gtgaaccccg cgttgtacga gattctcacc
     2641 ggagaggcac tgcagcctcc ggctgggact tcaccctgac atcgcccaaa cccaccatgg
     2701 ccaagaagtc cgggtccgcc cagcgaacgg tcgaaacgct caagcacgac gaagcgacgc
     2761 ggaagaacat tccgaccgcc gagtatcaga gcgtgctcga aaagaatgcg gaggccccgg
     2821 tgcgcgtggc ttacgagcgt cgcaatcgcg atctcgatcc acagctggtg tggcgcggaa
     2881 aggatgagca ggactggagc gatctggtgg tgcacgcgcc gccgatctac atccaggaga
     2941 aggtccatcc caaggcgttg atcgacgacc tgctgcggca gacccgcgaa gccaagcatg
     3001 aagcgggcga attaccggcc gatttgtttg cggacttcaa cggcatcccg aaaggtgtcg
     3061 ataagacgga gttctaccag cacgatcaga actggtcgaa ccggatgatc ctcggggact
     3121 cgcttcaggt gatgtcgtca ctcgccgagc gcgaggggct gcgagggaag gtgcagtgca
     3181 tctatctcga tccaccgtac gggatcaagt tcaactcgaa tttccagtgg agcacgacga
     3241 gccgcgatgt gaaggacggg aacgccgcgc acatcacgcg cgagccggag caggtgcggg
     3301 cgtttcggga tacgtggcgg gatgggattc attcgtatct gacgtatttg cgggatcggc
     3361 tcaccgtcgc gcgcgatctg ctcacggagt cgggatcgat tttcgtgcag attggccaat
     3421 cgaattgtca cctaatccga tctctctgtg acgaaatatt tggggtagag aacttcatct
     3481 cgcaaattgt ttttgccaag acagcaagcg caacatcgga atatctgtcc ggcacatacg
     3541 acgtgctcgt tttctacgca cgatcgcgcg agcacctcaa gtatcatcaa ccgctgatgt
     3601 ccaagcagat cggaggcacc ggggcagacg cctacaagcg cgtccgcctg ccgaatcttt
     3661 ctgagcgggc tttaacgaac gcagaatcaa aaagacctga ttcgcttccg accgatgctc
     3721 gagtattccg gatcgacaat ctcaccagcc aaagcgtcgg cagagacaaa ggtgagggcg
     3781 ctgcgtcctg gtttcccgtc cagttcgagg gcaagacgct tcgtccatcc gaaaaagtac
     3841 gctggaaaac caaccaagtc ggaatggctc gacttgctga agcttcgaga ctgagatcga
     3901 caataaaggg cctctactat gtgcgatacc tggatgattt cgccgcgtcc agtgaggata
     3961 atgtgtgggc cgacacgggc atcgccgggt tcgcttcgga aaagcgttac gtggttgaga
     4021 catctgaaaa ggtggttcag cgctgcgtgc tcatgaccac cgatcccggc gatctgatcc
     4081 tcgatcccac ctgcggctcc ggcaccaccg ccaccgtcgc cgagcagtgg gggcgtcgct
     4141 ggatcactat cgacacgtct cgcgtcgcac tcgcgctcgc gcgcgcacgc atcatgggtg
     4201 cccgctatgc ctactatctc ctcgccgact ctcgcgacgg tcagctcaag gaagccgaag
     4261 tcactcgcgc agcaccatca tcgcaaccga cgcgcggcaa catccgccag gggttcgtct
     4321 acgagcgcgt cccgcacatc accctcaagt cgatcgccaa caacgccgag atcgatgtca
     4381 tctgggagaa gtggcaagcc gtgctcgagc cgcttcgcga gaagctcgat gcaacgctga
     4441 agaagaactg gcaggagtgg gagatcccac gagagactga cgcgaactgg tcagctgacg
     4501 cacgacgact tcacgccgaa tggtggaagg ctcgcattgc ccggcagaca gagatcgatg
     4561 cgtcgatcgc cgccaaggcc gagttcgagc tcctctatga caaaccctat caggacaaca
     4621 agaaagttcg cgtggccggc ccgttcaccg tcgagagcct ctcgccccac cgcgtcctcg
     4681 gcgtggacga ggacgacgag ctgatcgacc atgtctcgga aagcggcgac gaatacctcg
     4741 cgactcagtc gttcccgcag atggtcctcg agaatctgcg cactgctggc gtgcagcagg
     4801 cgcacaagga ttcgcgcatc gccttcacct cgctcactcc gtggcctggc gatctcgttg
     4861 ccgccgaggg gcgctatacg gaaggcgagg gcgcgtcagc cgtcgaacgt cgcgccgcga
     4921 tcttcatagg tcccgagtac ggcaccgtca cgcgacccga tctcgtgcag gccgccaagg
     4981 aagctggcga cgccgacttc gatgtgctca tcgcctgcgc gttcaactat gaagcgctca
     5041 ccacggagtt caacaagctc gggcgcatcg ccgtgctcaa ggcccgcatg aatgcagatc
     5101 tgcaaatggc ggatgatctc aagaataccg gcaaaggaaa tctcttcgtc attttcggcg
     5161 agcctgacat cacgctgatt cccgccgaca atagacgcgt gcgggtaaag gtgaatggcg
     5221 tggatgtctt tcatcccggc acgggcgaag tgcggagcga cggtccggac ggtatcgcgt
     5281 gctggttcat cgacactgac tacaacgagg agagcttctt cgtgcgccac gcctattttc
     5341 tgggcgccaa cgatccgtac ggagcgctcc ggacgacgct caaggccgaa atcaacgagg
     5401 aggcgtgggc tactctgcac agcgacacat cccgaccatt cgagaagccg aagtccggac
     5461 ggatcgcggt caaggtgatc aatcacctgg gggatgaggt gatgaaggtg tttcgagtgc
     5521 agtgacgagc accgcagctg ccaggctcaa cgactctccg cgtcactgca ttcggcgtat
     5581 gctgcgttct ttcgaaacaa ctggcgcggc agctacgtac gacctcccac gcagcatcac
     5641 gctgcccacg cacgctggga ggcatcatga tctggtggat ctgtgttggg ctcgtcgccg
     5701 g
//
LOCUS       DATIMD010000177         4594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4687764, whole genome shotgun sequence.
ACCESSION   DATIMD010000177 DATIMD010000000
VERSION     DATIMD010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4594
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4687764"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1520
                     /locus_tag="VLI40_04005"
     CDS             <1..1520
                     /locus_tag="VLI40_04005"
                     /inference="COORDINATES: protein motif:HMM:NF022481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2723 domain-containing protein"
                     /protein_id="HSU96366.1"
                     /translation="FLVYCVTLARGVTYWDAGEFLAAIHSLGIPHPPGTPLFVLMAHV
                     WSMIASPVVGFTIAVNGFSALATAAAFGLVANIFWRATGDGVAAFAGALTAGLMSTVW
                     LNATETEVYACALFGAFAILWCARQYALTLEGRWVVLTLYTCGLGWSLHLTSLLVVPA
                     ALYAFFSARRVPDVRALGLGLLLSLVGGSVVLFMLLRARHDPAINQGDPATISALIDV
                     VQRHQYDVAPLWPRRAPLWLQFGNVLEYADWQVALGLGPDPGPTLARTSATVLYTLLG
                     IYGSIRHRAIDRTSWRAWMLLLITTSVGVVLYLNLRAGASYGAGIIPAGVPHEARDRD
                     YFFTWAFVCWGAWAGFGVVQLARRFAQRRTLTTTQAQLALVAAVAIAALPIALNWSAV
                     RALRHDEQQYAERSSREILAAVPPNAVFLAHGDNDTYPLWYLQEVLHMRRDVTIVTIP
                     LLPPEWYRAELQRRHHLLDSNFVNTWHGSTQTVANLTANAARQGREVVESPFIQR"
     gene            complement(1619..3106)
                     /gene="ahcY"
                     /locus_tag="VLI40_04010"
     CDS             complement(1619..3106)
                     /gene="ahcY"
                     /locus_tag="VLI40_04010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HSU96367.1"
                     /translation="MATTASPHASTGMNAGIDRPAFRVADISLAEFGRKEIRLAEQEM
                     PGLMALRAEYKGKKPLTGARIMGSLHMTVQTAVLIETLTELGADVRWVSCNIFSTQDH
                     AAAAVAVGKNGTVENPKGIAVYAWKGETLEEYWWCTEQALMWPDGGGPNLLLDDGGDA
                     TLLVHRGADYEAAGKIPEFNPATDAEEWGVILDLLRAQAVSNPGRWTRVAADIRGVSE
                     ETTTGVHRLYEMMKAGTLRFPAINVNDAVTKSKFDNLYGCRHSLTDGILRASDVMLAG
                     KVAVVFGYGDVGKGCAQSLRGQGARVIITEIDPICALQAAMEGYQVTTLDEVVSTADI
                     FITATGNKNIITVDDMAKMKDKAIVGNIGHFDNEIDMAGLKKKGITRVNIKPQYDEFV
                     FPDGHSVMILAEGRLLNLGCATGHPSFVMSASFTNQVMAQLELHTNSDRLEKKVYTLP
                     KHLDEKVARLHLDKLGVKLTKLSKDQADYIGVPVDGPYKPDHYRY"
     gene            complement(3116..4189)
                     /locus_tag="VLI40_04015"
     CDS             complement(3116..4189)
                     /locus_tag="VLI40_04015"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HSU96368.1"
                     /translation="MPTIFDRLTALSDPTRSRLLALLDRHELTVTELCAVTQLPQSTV
                     SRHLKVLGDGGWVTSRADGTSRRYRAMADRLDPAGRRLWTLVREQVSAAPSAQNDTQR
                     LRSVLAERRSASQEFFSTAAGQWDRLRGDLFGTRADLVGLLGLLDESWFVADLGCGTG
                     QVSEMLAPFVAQVIAVDESPAMLSAARKRLKGYDNVSLREGDLGALPIDDESLDAALI
                     FLVLHYTADPAEVLTEVCRVLKPEGRVLVVDMMPHERSEFRNIMGHVWQGFGADELSR
                     WAEQAGLYDLRYHPLPADPVAKGPTLFAASARRPLRAKANTAVSDARSLRIPTKPVSA
                     ASATTARITKPKAGARAGNSQPN"
     gene            4388..>4594
                     /locus_tag="VLI40_04020"
     CDS             4388..>4594
                     /locus_tag="VLI40_04020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96369.1"
                     /translation="MAMHFPNLPERVAEIRGLLAAAAARGGHGQTVKLVAVTKTHGPE
                     AAIEAWEAGVPDCGENKVQEALGKM"
BASE COUNT          781 a         1477 c         1401 g          935 t
ORIGIN      
        1 tgttcctggt ttattgcgta acccttgcta gaggggtgac ctactgggac gccggtgaat
       61 ttctggcggc gatccattca ctcggaattc cgcatcctcc tggcacgccg ctcttcgtac
      121 tgatggcgca tgtgtggagc atgatcgcgt caccggtggt tggattcacg attgccgtca
      181 atgggttctc tgcgcttgcc acggctgcgg cgttcggact cgtcgccaac atcttctggc
      241 gtgccacggg cgacggagtc gcggcgttcg ccggcgcact caccgcgggc ctcatgtcga
      301 ccgtctggct caacgcgacc gagaccgagg tgtacgcatg cgccctgttc ggtgcattcg
      361 cgatcctgtg gtgcgcacga cagtacgcat tgacgctcga agggcgctgg gtggtgctca
      421 ctctctacac gtgcgggctg ggatggtcac tgcatcttac gtcgctgttg gtcgtaccgg
      481 cggcgctgta cgcttttttt tctgcgcgga gggtgcccga cgtgcgagcg ctcgggctcg
      541 gcctgctgct atcgctcgtc ggcggctccg tcgtactgtt catgctgctt cgcgcgcggc
      601 acgaccctgc gatcaatcag ggtgatccgg cgacgatcag cgcgttgatc gatgtggttc
      661 agcgacatca gtacgacgtt gcgccgctct ggccgcgtcg cgcgccactc tggcttcagt
      721 tcggcaatgt gctcgagtac gccgactggc aggtggcgct cgggctcggt cccgatcccg
      781 gtcccacgct ggcgcgcacg tcggcgacgg tgctgtacac cctgctgggg atttacggat
      841 cgatacgcca cagggcgatc gatcgcacca gctggcgcgc gtggatgctg cttctaatca
      901 cgaccagcgt cggtgtcgta ctctatctca acctgcgcgc cggcgcatca tacggagctg
      961 gtatcatacc ggcgggagtg ccgcacgaag cgcgcgatcg cgactacttc ttcacgtggg
     1021 cgttcgtgtg ctggggcgca tgggcaggat ttggcgtcgt acagcttgcg cggaggttcg
     1081 cgcaacgccg cacattgact accacgcagg cgcaactcgc gcttgttgca gccgtagcaa
     1141 tcgccgcgct tcccatcgca ctcaactggt cggcggtgcg tgcattgcgc cacgacgaac
     1201 agcagtacgc agagcgcagt tccagggaga tacttgccgc ggtgccgccc aacgcggtat
     1261 tcctggcgca cggtgacaac gatacctatc cgctctggta cctccaggaa gtgctgcaca
     1321 tgcgacgcga cgtcaccatc gtgactatcc cgctgttgcc acctgaatgg tatcgcgccg
     1381 aattgcagcg ccggcatcat ctgctggatt caaacttcgt gaacacatgg cacggcagca
     1441 cccaaaccgt cgcgaacctg acggcgaacg cggcgcgtca gggcagggag gtagtcgaat
     1501 cgccgttcat ccaacgatga acgacgatgc acccatctgc ccgacgcgcc tggatgccat
     1561 gcgaatgtgg ggcacggata tatccgtgcc ttccactttg gctgcgatcg aacccgattt
     1621 aataccggta atgatccggc ttgtacggcc cgtccaccgg aaccccgatg taatccgcct
     1681 gatccttcga cagcttcgtg agcttgacgc caagcttgtc gaggtgcaac cgggcgacct
     1741 tctcgtcgag atgcttggga agcgtataga ccttcttctc gagcctgtcc gagttcgtat
     1801 gcagctccag ttgcgccatc acctggttgg tgaaagacgc cgacatcacg aagctgggat
     1861 gacccgttgc gcagccaaga ttgagcagac ggccttccgc caggatcatc accgagtgtc
     1921 cgtcaggaaa cacgaactcg tcatactgcg gcttgatgtt gacgcgtgtg attcccttct
     1981 tcttcaggcc ggccatgtcg atctcgttgt cgaagtgacc gatgttgccg acgatcgcct
     2041 tgtccttcat cttcgccatg tcgtcgacgg taatgatgtt cttgttaccc gttgcggtga
     2101 tgaagatgtc cgcggtcgac accacctcgt cgagcgtcgt cacctggtag ccttccatcg
     2161 ctgcctgcag tgcgcaaatc ggatcgatct cggtgatgat cacgcgcgcg ccctgtccac
     2221 gcagcgattg cgcgcaaccc ttgccgacat caccatatcc gaacactacc gcgaccttgc
     2281 cggcgagcat cacgtcgctc gcgcggagaa ttccgtccgt gagcgagtgc cggcagccgt
     2341 acaggttgtc gaacttgctc ttcgtcaccg cgtcgttgac attgatcgcc gggaaccgga
     2401 gcgtaccagc cttcatcatc tcgtagagac ggtgcacgcc ggtcgtagtc tcttcagaaa
     2461 cgccgcggat gtcggcggcg acgcgcgtcc agcgtccagg attgctgacg gcctgagcac
     2521 gcagcagatc gagaatcaca ccccattcct ctgcgtcggt tgccgggttg aattccggaa
     2581 tcttgccggc ggcttcgtaa tcagcgccgc gatgcacgag caacgttgcg tcgccgccgt
     2641 cgtccaacag caggttcggt ccgccgccat cgggccacat caacgcctgc tcggtgcacc
     2701 accagtactc ttccagcgtc tcgcccttcc acgcgtacac ggcaattccc ttgggattct
     2761 cgacagtgcc gttcttgccg accgcaacag ccgcagccgc gtgatcctgc gtcgagaaga
     2821 tgttgcagct cacccagcgc acgtcggcgc caagctcggt gagtgtctcg atcaacactg
     2881 ctgtctgcac ggtcatgtgc agcgagccca tgatgcgcgc gccggtcaac ggcttcttcc
     2941 ccttgtactc cgcgcgaagc gccatcagtc caggcatttc ctgctcggcg agacgaatct
     3001 ccttacgccc gaactctgca agagaaatgt ctgcgaccct gaatgccgga cgatcgatgc
     3061 cagcgttcat tccggttgat gcgtgtggtg aagctgtagt ggccattgtg ctatctcagt
     3121 tcggttgtga attgccagcg cgtgcaccgg ctttcggttt cgtgatacgt gcggttgttg
     3181 ctgaagcggc cgaaaccggc ttcgtcggaa tgcgcagcga ccgtgcgtcg ctgactgcgg
     3241 tgttcgcttt ggcgcgcaat ggacgtcgcg ccgacgcagc gaacagcgtc ggtcccttcg
     3301 ctaccggatc cgcaggaagc ggatggtagc ggaggtcgta cagtcccgcc tgttcggccc
     3361 agcgcgaaag ttcatccgcg ccaaatccct gccatacgtg acccatgatg ttgcggaact
     3421 cggagcgctc gtgcggcatc atgtccacca cgagcacccg tccttccggc ttcaacactc
     3481 tgcatacttc tgtcagcact tccgccgggt cggcggtgta gtgcaacacc agaaagatca
     3541 gcgccgcatc gagcgactcg tcatctatcg gtagcgcgcc caggtcgccc tcgcgcaatg
     3601 agacgttgtc gtaacccttg agtcgcttgc gcgccgcgct cagcatcgcg ggtgactcgt
     3661 ccaccgcgat cacctgtgcg acgaacggtg ccagcatctc cgacacctgt cctgtgccac
     3721 agccaaggtc ggccacgaac cagctttcat ccagcagccc gagcagtccc acgagatccg
     3781 cgcgcgtccc gaacaggtcc ccgcgcagcc tgtcccactg gcccgctgcg gtggagaaga
     3841 actcctgcga tgcactacgc cgctcggcca gcacggaacg cagcctttgc gtgtcgttct
     3901 gcgccgatgg tgccgcgctt acctgctcgc gcacgagcgt ccacaatctc cgtcccgcgg
     3961 gatcgaggcg gtccgccatc gcccgatagc gccgactggt accatcggcc cgcgacgtta
     4021 cccatccacc gtcgccgagg accttgaggt gccggctgac cgtggactgc ggcagctgcg
     4081 tgaccgcgca cagctccgtg accgtgagct cgtgccggtc gagcagtgcc agcaacctgc
     4141 tccgcgtagg gtcggagagc gcggtgagtc ggtcgaagat ggtgggcatt gatccgttca
     4201 tccggatgga aagatatatc ctttcgggcg caagttgaag gggtggctct cccggccagg
     4261 cttggcccgc cgctcaccgc aggcccgggg tcggactgtc gcgccgggta ctggcagggt
     4321 cgccagcagg gtcgccgcag attgcgcgcc gccacgggca ttcggcgcca tgcggtggtt
     4381 aaatttcatg gctatgcatt ttccgaatct ccccgagagg gtcgcggaga tccgtggact
     4441 cctggcggcg gcggccgcgc gtggaggaca cggccagacg gtgaagctcg ttgccgtgac
     4501 caagacacat ggtcccgaag ccgccatcga ggcgtgggaa gcgggtgtcc ccgactgtgg
     4561 cgagaacaag gttcaggaag cgttagggaa gatg
//
LOCUS       DATIMD010000178         2982 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3818450, whole genome shotgun sequence.
ACCESSION   DATIMD010000178 DATIMD010000000
VERSION     DATIMD010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2982
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3818450"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /locus_tag="VLI40_04025"
     CDS             complement(<1..455)
                     /locus_tag="VLI40_04025"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSU96370.1"
                     /translation="MLIRRATFDDADILAALLVDYLREGYAGHVGSTPEQLRRDVLND
                     RSRRYVLLAEVREQPVGFVAWDTVYDMHWAMSGGQINDLYVTPMRRGLGVALALVART
                     AFEVRANDGAFLRGGAYDRESTRRAYGRVAVVQPSGETHLSGRAFRQIA"
     gene            complement(600..806)
                     /locus_tag="VLI40_04030"
     CDS             complement(600..806)
                     /locus_tag="VLI40_04030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HSU96371.1"
                     /translation="MHLTVEIEREDDGRWLAEVPGLAGALAYGQSRDEAVARVEALAL
                     RVLADRLENGEAGPDLVSVSFQAA"
     gene            complement(1035..>2982)
                     /locus_tag="VLI40_04035"
     CDS             complement(1035..>2982)
                     /locus_tag="VLI40_04035"
                     /inference="COORDINATES: protein motif:HMM:TIGR00733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HSU96372.1"
                     /translation="PKELTIRGLILGALITTVFTTANVYLGLKVGLTFASSIPAAVIS
                     MALLSAVKDSTILENNIVQTVASAAGTLSAIIFVLPALVIVGWWTRFPFWESFFICLS
                     GGVLGVVFTIPLRRALVTNSDLPYPEGVAAAEVLKVGSGTRGETKDDTGEAHEGLVAV
                     VLGSVASASLAIVSGTRIIAGGLAGVIRIGATATTGYDVAWSLALLGAGQLVGLSVGM
                     AMLVGQVISWVIAVPILTSMQPATIGQTLAAHTTAIWSTQVRFIGAGTIGVAAIYTLL
                     TLAKPVLGGLVSTLAASRAASTADDRDRDLAPSWIFILTAVCLVIAAWLSYTFAKSTV
                     LAPSALELTMLAVPFVLIVGFVIAGICGYMAGLIGASNSPISGIGILSIVICAALVAL
                     IVAPTTETRHALVAFALFVTAIVFACATISNDNLQDLKTGQLVGASPMRQQIALVVGV
                     AAGASVIPFVLNLLAKAYGFAGAPNLNVVAAHPLPAPQATLIAALAQGVIGGSLEWTM
                     LGIGALVGVGLILLDSALGVMKKLRIPPLAVGIGIYLPMSATFAVIIGAVLSRWYEGR
                     TRSMPNPERAQRLATLVASGLIVGESVWGVINAGLIVGFTTEAPIALVPESFAPARWL
                     GVFAFVGIVAWLYRWMLRKSSVAR"
BASE COUNT          636 a          944 c          872 g          530 t
ORIGIN      
        1 tctgcaatct ggcgaaacgc gcggcctgac agatgcgtct cacccgacgg ctggaccact
       61 gcgacgcgtc cataagcgcg gcgcgtactc tctctatcat atgcgccgcc acggagaaat
      121 gcgccgtcgt ttgcacgcac ctcaaacgca gtacgcgcga cgagtgcgag tgccacgccc
      181 agccccctac gcattggcgt gacgtaaaga tcattgattt gcccaccact catcgcccaa
      241 tgcatgtcat acaccgtatc ccacgcaacg aatccgacag gctgttctct gacctcggcc
      301 aacagaacgt agcgacgtga tcgatcattc agcacatcgc gccgaagctg ctcgggagtg
      361 ctaccgacgt gtcctgcata accttcacgc aagtaatcca cgaggagtgc cgcgaggata
      421 tcagcatcat cgaacgtcgc gcgtcggatc agcacgaagc tcatccctgc ttaagtctca
      481 gaggtcgtca ggttgcaatc ccgtgtgccg cgttcgcgct tgagttgcca tccgatgcgg
      541 tacaaagcgg cgagaacgcg ccgcgccttg gtggctggcc actgactcac tactgcaggc
      601 tacgcggcct ggaacgatac gcttaccaga tcaggtcccg cctcgccatt ttccagtcga
      661 tcggcaagca cacgcaatgc gagcgcttcg acacgtgcga cggcctcatc acgtgattgc
      721 ccatatgcca gtgcgccggc caagccgggg acttctgcca gccagcgccc gtcatcttcg
      781 cgttcaattt cgacggtcag gtgcatcgga cctccgatga ggatagaacc atctagcagg
      841 tggtttggcg gcctgctaac gaacggcgtc ctcatatccc gggacgttca gagggacatc
      901 gccaggatgc tgttcgtaga aacgaaatgc ctcttcgcaa ttcccggcga agttcagtcg
      961 tgtatagagc ttcacgaata cgttctcatg agaatgattt tgcgtggtta cgatccgaga
     1021 gctcgggtct gattctaccg agctaccgac gacttccgca acatccatct gtacagccag
     1081 gcaacaattc caacgaatgc gaacactccg agccatcgcg cgggcgcaaa gctctccggt
     1141 acgagtgcga tcggcgcctc ggtggtgaag ccgacgatga gtccggcgtt gatcactccc
     1201 cacacgctct caccgacgat caatcccgaa gcgacgagcg ttgccagtcg ctgagcgcgc
     1261 tccgggttcg gcatcgagcg agtgcgtcct tcataccagc gagacaacac ggcgccaatg
     1321 atcacggcga atgtcgcgga catcgggaga tagatcccga ttccgacagc gagcggcggg
     1381 atgcgcaatt tcttcatcac gccgagtgcg ctgtcgagca gaatcaaacc gacgccgacg
     1441 agggcaccga tgccgagcat cgtccactcc agacttccgc cgatcacgcc ctgggcgagc
     1501 gcggcgatga gcgtcgcctg cggcgccggc agtggatgcg cagcaaccac gttcaggttc
     1561 ggcgcgcctg cgaaaccata ggccttcgca agcaggttaa gcacgaacgg gattaccgaa
     1621 gcgcctgccg caacaccgac cacgagtgca atctgctgcc gcatcggtga ggcaccgacg
     1681 agttgtccgg tcttgagatc ctgcaggttg tcattcgata tcgttgcaca tgcgaagacg
     1741 attgccgtaa cgaataatgc gaatgcaacc agcgcatgcc gcgtctccgt cgtcggtgca
     1801 acgatgagcg cgaccagtgc cgcgcaaatc actatcgaca ggatgccgat gcccgagatc
     1861 gggctgttcg atgcgccgat gagtcctgcc atgtagccgc aaattccggc gataacaaag
     1921 ccgacgatca gcacgaacgg aaccgcgagc atcgtcagct cgagtgcgct gggtgcaagc
     1981 acggtcgatt ttgcaaatgt gtacgacagc cacgccgcga tcacgaggca tacggccgtc
     2041 agtatgaaga tccacgaagg agcgagatcg cggtcacgat cgtccgccgt actcgctgcg
     2101 cgggacgcgg cgagtgtgct cacaagtccg ccaagcaccg gcttcgcgag tgtcaggagc
     2161 gtgtaaatcg cggcgacgcc tatggtgccg gcgccgatga accgaacctg cgtgctccag
     2221 atcgccgtgg tgtgtgcggc cagcgtctgt ccgatggtgg cgggctgcat cgatgtcagg
     2281 atcggcacgg caattaccca tgagatcacc tggccgacca gcatcgccat accaaccgac
     2341 aacccgacca gctgaccggc gccaagcaac gcaagcgacc acgcgacgtc atagcccgtc
     2401 gttgcggtcg ctccgatgcg aatgacgcct gcgagtcctc ctgcgatgat ccgcgttccg
     2461 ctcacgatgg caagactggc cgacgcgacg gatccgagca cgacggcgac gagtccctca
     2521 tgtgcctcgc ccgtatcgtc cttcgtctca ccgcgtgtgc cagatcccac cttcagtact
     2581 tcagcggccg cgacgccttc gggatacggc aggtcggagt tcgtaaccag agcgcgccgg
     2641 agcggaatgg tgaacacgac gccgagcacg ccaccgctca ggcagatgaa aaaggattcc
     2701 cagaacggga atcgagtcca ccatccgact atcaccagtg cgggcaggac gaagatgatc
     2761 gccgagagtg tgccggctgc cgatgcgaca gtctgaacga tgttgttctc gaggatcgtc
     2821 gagtccttca ccgcgctcag cagcgccatg gagatcaccg ccgccggtat cgacgaggcg
     2881 aaggtgaggc ccaccttgag gcccaggtac acgttggccg tcgtgaagac ggtcgtgatg
     2941 agggcgccga gaatcagccc gcgtatcgtc agctcttttg gt
//
LOCUS       DATIMD010000179         2504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3818509, whole genome shotgun sequence.
ACCESSION   DATIMD010000179 DATIMD010000000
VERSION     DATIMD010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3818509"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1126)
                     /gene="gpmI"
                     /locus_tag="VLI40_04040"
     CDS             complement(<1..1126)
                     /gene="gpmI"
                     /locus_tag="VLI40_04040"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046537 -
                     2,3-bisphosphoglycerate-independent phosphoglycerate
                     mutase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HSU96373.1"
                     /translation="MATTGQPGKAEKAEQSGGQVALVVLDGWGFRAQREGNAIALAQT
                     PTWDALWSLRSRSLLEASGLRVGLPAGQMGNSEVGHLNLGAGRVVMQDLVRISAAVTD
                     GSFFRNPALVAACDAARRGGTLHVMGLLGRGGVHAIDAHLYAVIDMAERLRVPRVALH
                     LLTDGRDTLPQSALGYLHDLLKYVNGRAQVASIGGRYYGMDRDRRWQRTELFYRAAVD
                     GVGPSATDPVAAVQRAYDDGVTDEFIVPVVITRDGAPVAPMRDGDAVICFNYRSDRMR
                     QIVRAMTDPAFDGFDVSARPSLTVTTMTQYDATFDVNVAFAPFSMSRIVAEVVSEAGR
                     SMLKTAETEKYPHVTYFFNGGVEPPYPGEERRLVPSQKVAT"
     gene            1193..2026
                     /locus_tag="VLI40_04045"
     CDS             1193..2026
                     /locus_tag="VLI40_04045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96374.1"
                     /translation="MRHLYVDVHLSVHPSGGGSVPRVSDSHIVRNKTIVRTMRVAFAA
                     AALVVASAIRPGTELGAQQASQQAAQQVSRTKSPAPPATPAAPSAAATAAATAAAVVP
                     TASNDSYNVSYNIAVPSVLRDAPSSAAVGQLQKTANVEVIGRDRGWSRVRIEGWVPDS
                     ALVPADTAFRAHLSAADLRADPAAARGKMVIWNVEFLALQTADPLRHGLADEEPYILA
                     RGPNSENALLYLVVPPSLMGTARALQPLAKITVTARVRDGRSDPVGIPILDIQTLRRI
                     R"
     gene            2023..>2504
                     /locus_tag="VLI40_04050"
     CDS             2023..>2504
                     /locus_tag="VLI40_04050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96375.1"
                     /translation="MTDPHDPQESDGRRARSRGGDRRREGWHAFREAYPTFLKVIAVV
                     FLLLVAGDMWLFYRRESYGQEIARLRSEMTDAERKKSDIAVQQEQDKVRLAIELAKRQ
                     AHFDPSLHLSIAVDSGVMYLERDGALLRVMRVALAPAKVPGFKTTNGDTTATTLPRGQ
                     R"
BASE COUNT          477 a          784 c          783 g          460 t
ORIGIN      
        1 atgtcgcgac tttctggctc ggaacgaggc gtcgttcctc gccgggatat ggcggctcga
       61 caccgccgtt gaagaaatac gtcacgtgcg gatatttttc cgtctctgcc gtcttcaaca
      121 tcgacctgcc cgcttcggat acgacctcag cgacgatgcg cgacatcgag aacggagcga
      181 acgcaacgtt cacgtcgaac gtcgcgtcgt actgagtcat cgttgtcact gtgagtgacg
      241 ggcgcgccga gacgtcgaac ccgtcgaatg cgggatcggt catcgcgcgc acgatctggc
      301 gcatgcgatc ggagcgatag ttgaagcaga tgacagcatc gccgtcacgc atcggcgcaa
      361 ccggcgcacc gtctcgcgtg attacaacgg gcacgatgaa ctcgtcggtt acgccgtcgt
      421 cgtacgcgcg ctgcactgct gcgaccgggt cggtcgcgga ggggccgacg ccatcgacgg
      481 cggcgcggta gaacagctcg gtacgttgcc agcgcctgtc ccggtccatt ccgtagtacc
      541 gtccgccgat gctcgccacc tgtgcgcgcc cgttgacgta tttgagcagg tcgtgcaggt
      601 atccgagcgc cgactgtgga agggtatcgc gtccgtccgt caacaggtga agagcaacgc
      661 gcggtacccg gagacgctcc gccatgtcga tcacggcata gagatgcgca tcgatcgcgt
      721 gcactcctcc gcggccgagc agccccatga catgcagcgt accgccgcgt ctggccgcgt
      781 cgcaggctgc gaccagcgcc gggttccgaa agaatgatcc atcggtgacc gcggctgaga
      841 tgcgaacgag gtcctgcatg acaacgcggc cggcaccgag gttcagatgg ccgacctcgc
      901 tgttacccat ctgtcccgcg ggcagtccca ctcttaggcc ggacgcttcg agaagagagc
      961 gtgatcgcag gctccagaga gcgtcccatg tgggcgtctg agcgagtgcg atcgcgttgc
     1021 cttcgcgctg agcgcggaag ccccagccat cgagaacgac aagggcgacc tgaccgccgg
     1081 attgctcagc tttttcagcc tttccgggct ggccggtcgt tgccatgttc gctctttaag
     1141 gtgtaatgaa acaaacaacc acgaaaccgt ctaatctacg cgtcctgtcc ccatgcgtca
     1201 cctgtacgtg gatgtgcacc tgagcgtgca cccgagcggc ggcggatccg tgccgcgcgt
     1261 gtccgattcg cacatagtgc gaaacaagac gatcgttcgc acgatgcgcg tcgcatttgc
     1321 ggcagcggca ctggtcgttg catctgcgat tcgacccggc actgagctgg gtgcgcagca
     1381 ggcatcgcag caggctgcgc agcaggtttc gcgcacgaaa tcgccagccc ctcccgcgac
     1441 accggctgct cccagtgctg ccgcaaccgc tgccgccacc gctgccgcgg ttgtgccaac
     1501 tgccagcaac gattcgtaca acgtctcgta caacatcgcc gttccatctg tgctgcgcga
     1561 tgcaccgtcg tcggccgcag tcgggcaact gcagaagacc gcgaacgtgg aagtgatagg
     1621 tcgcgatcgc ggctggtcgc gtgtacgcat cgagggatgg gtaccggatt cggcgctcgt
     1681 tccagccgac accgcatttc gcgcgcatct gagcgctgcg gatctaaggg cggatccggc
     1741 tgcagcacgc gggaaaatgg tgatctggaa tgtcgaattc ctcgcgcttc agacggccga
     1801 tccactgcgt cacgggcttg ctgacgagga gccttacatt cttgctcgcg gtccaaattc
     1861 agagaatgcc ttactgtatc tcgtagtacc gccctcgctc atgggcacgg ctcgtgcatt
     1921 gcaacctctt gcaaagatca cggtcaccgc gcgagtgcga gacggacgca gtgatccggt
     1981 cgggattccg atcctcgaca ttcagaccct tcgccgaatt agatgactga tccgcacgat
     2041 ccgcaggaat cggacggccg ccgcgccagg tcgcgcggcg gcgaccggcg gcgtgaaggg
     2101 tggcacgcgt ttcgagaagc gtatccgacg ttcctcaagg tcattgcagt cgtatttctc
     2161 ctgctcgtag cgggggatat gtggctgttc tacagacgcg aaagctacgg ccaggagatc
     2221 gcgaggctgc gttccgagat gaccgacgca gagcgaaaaa agagcgacat cgcggtgcag
     2281 caggaacagg acaaggtgcg gctcgcaatc gaactcgcca agcgtcaggc gcacttcgat
     2341 ccgagccttc atctatcgat agcggtggac agcggcgtga tgtatctcga gcgagacggc
     2401 gcgctgttac gcgtgatgcg tgtcgcactt gctcccgcga aggtgccagg attcaagaca
     2461 acgaacggag ataccaccgc cactacgctg ccgcgcggtc aacg
//
LOCUS       DATIMD010000180         3365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3818511, whole genome shotgun sequence.
ACCESSION   DATIMD010000180 DATIMD010000000
VERSION     DATIMD010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3365
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3818511"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..627
                     /locus_tag="VLI40_04055"
     CDS             <1..627
                     /locus_tag="VLI40_04055"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSU96376.1"
                     /translation="ARIIEQITGDPWENYVQKNILSPLGLTRSYFGITPYYLAQDRSH
                     NYTLLRDSAGREFVQDNGTDFDPGITIPNGGWNAPLADLVTYMGFLTNATHGDSEKQR
                     LYDTVLKHSSLEEMWRPIHPTKPATADETEAMGMSFFVVHKGGATFIGHTGEQAGFVS
                     FMYLNPANGSAVIAVFNTDTDLAPGTGPAGKGLSAFDTIREAAFGLIG"
     gene            complement(772..2487)
                     /locus_tag="VLI40_04060"
     CDS             complement(772..2487)
                     /locus_tag="VLI40_04060"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSU96377.1"
                     /translation="MSIREHLRLTTIRDTLLVGFAALVFCLVVAGTLGWIAVRAGAGD
                     VTGELQSVLATAQQSSDYSNLVTREIQAASAYLTSGDSASLRDFRQLGHAAHGLQRRF
                     GTTQSATPAEVAAIAAVDSRLADFENAYALAHRLRDMGRADEARAQTERARLVVAGLL
                     DDLTRFEGTKATDVANAASHIDYLARWRATAVLGAVAIAALLAIMIAIRTIRAIATPL
                     QELSRHASSFSKGDLTARTDVAGLPGEFAAVALAMNHAADSLSRVIDVATRTADDVTH
                     SAGDLASASQQISDTANQVSEAVTQVSAGAEAQVQQIRIVTRSLDTIRDAADGVAAGA
                     EEVQALASSIHGQAADKRAELERTLSILVDVRTIVRQAAEEVRVLNSTVGDINKFVIS
                     VGRIADQTNLLSLNAAIEAARAGAAGRGFGVVADEIRKLADQSRAAADDVVDLTSSVT
                     SRVSRTYSTMERGESQVGELERVSRDIDDALASIAAAAERTTRAAEGVARTADDNVRV
                     VQHATDGLAVVARTAEGHAATAMQVSASTEEQSAACEQMTTASALLLRGSTHLRNLVG
                     ELRTA"
     gene            complement(2484..>3365)
                     /locus_tag="VLI40_04065"
     CDS             complement(2484..>3365)
                     /locus_tag="VLI40_04065"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSU96378.1"
                     /translation="SGADAAQVAGEFVANRKILAVIGHAGSAAEVSAAHVYDGGHLPA
                     VATTPSSPDITGISPWVFRMSTSDSVNGMTLARFASSLSDSLHRPTRVAILYHNDSYG
                     RGLSDAFLHSFRGQVLSTDPVGTDTNLEPYITYFKTHTPDIVFVASDEDIGIKVLREA
                     RRQQLTATFLGGDGWQGVVSEPASEGAFIGTPFTAQNSSEATQKFASAFRARYGMIPD
                     AHAALAYDATRLIASALRSGATTRTEIRDYLASLKQPTAFASLSGPTWFDGTDPVGDT
                     FRMTRVHDGLMVPVARR"
BASE COUNT          591 a         1052 c         1081 g          641 t
ORIGIN      
        1 gcgcggatca tcgagcagat caccggcgat ccgtgggaga actacgtgca gaagaacatt
       61 ctgtcaccgt tgggactgac gcgcagttac ttcggaatca caccgtacta cctggcacag
      121 gatcgctcgc acaattacac cctgctgcgc gattcggccg gtcgagagtt cgtgcaggac
      181 aacggcactg acttcgatcc aggaatcacg attcccaacg gcggctggaa tgcgccgctt
      241 gcggatctcg tcacctacat gggattcctg accaacgcga cgcacggcga ctccgagaag
      301 cagcggctct acgataccgt gctcaagcac tcgagtctgg aagagatgtg gcggccgatc
      361 catcccacga agccggctac tgccgatgaa accgaggcga tgggaatgtc gttctttgtg
      421 gttcacaagg gtggcgcgac tttcatcggt cacacgggag aacaggcggg attcgtgtcc
      481 ttcatgtacc tcaatcccgc gaacgggtcg gcggtaattg cggtattcaa caccgatacg
      541 gatcttgcgc cgggaacggg gccggcgggg aagggactgt cggcgttcga tacgatacgc
      601 gaggcggcgt tcgggttgat cgggtgaata cgtaatttcg atcccgcgta acggggccag
      661 gcgcggatga atccggcgcc atccacgttc gattgcgccg aacggggcca ggcgcggatg
      721 aatccgcgcc gtacgcggga ccaccaattc ggcgcgtcgt agagcgtcgt tttatgccgt
      781 gcgcaattcc ccgaccaggt ttcgcaggtg cgtactgccg cgcagcagca acgctgacgc
      841 tgtcgtcatc tgctcgcatg cggcgctctg ttcttcggtc gatgcgctga cctgcatggc
      901 agttgccgcg tgcccctcgg cggtgcgcgc gacgacggcg aggccgtcgg ttgcgtgctg
      961 aaccacgcgg acgttgtcgt ccgcggtgcg cgccacgcct tctgctgcgc gcgtcgtgcg
     1021 ctcggctgca gctgcgatcg atgccagggc gtcgtcgata tcgcgcgaga cgcgctcgag
     1081 ctcgccgacc tggctctcgc cacgctccat ggtgctgtag gttctgctca cgcggctcgt
     1141 gaccgagctt gtgagatcga caacgtcgtc agccgccgcg cgtgactgat cggcgagctt
     1201 gcgaatctcg tctgccacga caccgaatcc gcggccggct gcaccggcgc gcgcggcttc
     1261 gattgcggca ttgagcgaca acaggttggt ctgatcggcg atgcgaccca cggagatgac
     1321 gaatttgttg atgtcaccga cggtggaatt gagcacgcgc acttcctcgg cggcctggcg
     1381 gacgatcgta cgcacatcga cgaggatcga aagcgttcgc tccagctcgg cgcgcttgtc
     1441 agccgcctgg ccgtggatgg acgatgcgag cgcctgtacc tcctcggcgc ctgccgctac
     1501 tccatctgcc gcatcgcgaa tcgtatcgag cgagcgagtc acgatcctga tctgctgaac
     1561 ctgtgcctcg gcaccggccg aaacctgcgt cacggcttcg gatacctggt tcgcggtgtc
     1621 ggagatctgc tgcgatgcgc tcgccaggtc acccgcggag tgtgtaacgt catccgccgt
     1681 ccgcgtcgcg acatcgatga cccgcgacag cgagtccgct gcatggttca tcgccagtgc
     1741 gaccgcggca aattccccgg gcagtcccgc gacgtcggtg cgcgccgtga ggtcgccttt
     1801 gctgaagctg ctcgcgtgtc tcgatagctc ctggagcggg gtcgcgatcg cgcgaatcgt
     1861 acgaatcgcg atcatgatcg caagcagcgc ggcgatcgcc acagcaccca gtaccgcagt
     1921 cgcgcgccag cgcgcgagat agtcgatgtg gctcgccgcg ttcgccacat cggtcgcctt
     1981 ggtgccctcg aagcgcgtga gatcgtcgag aaggccggct acaacgagac gtgcccgctc
     2041 ggtttgtgcg cgcgcttcgt ctgcacgacc catgtcgcgc aaacggtgcg caagcgcata
     2101 tgcgttctcg aagtcggcga ggcgactgtc gaccgcggcg atcgcggcaa cttcggctgg
     2161 tgtcgcactc tgcgtggtac cgaatcggcg ctgcagtccg tgcgctgcat gcccgagctg
     2221 acggaagtcc cgcaacgacg ccgagtctcc gctggtgaga tatgcggatg ccgcctggat
     2281 ctctcgcgtt acaagattcg agtaatccga actctgctgc gccgttgcaa gaacgctctg
     2341 cagctcaccc gtgacgtcgc ccgcccccgc ccgcaccgcg atccagccga gggttccagc
     2401 gaccacgagg cagaatacca gagctgcaaa tcccacgagc agcgtatcgc gtatcgtggt
     2461 aagacgaagg tgctcgcgaa tgctcatcgg cgtgccaccg gaaccatgag gccgtcgtgt
     2521 acgcgcgtca tgcggaaggt atcgccaacc ggatcggtgc catcgaacca tgtcggaccg
     2581 gacaggcttg cgaatgcggt cggctgcttc agagacgcga gataatcccg gatttcagtt
     2641 ctggtggtgg cgccgctccg gagcgcgctc gcgatcaagc gcgtcgcgtc gtaggcaagc
     2701 gcggcatgtg cgtccgggat cattccgtat ctggcgcgaa aggcggatgc gaacttctgc
     2761 gttgcttcgc tgctgttctg cgccgtgaac ggcgtgccga tgaaggcgcc ttcggacgcg
     2821 ggctcactta ccacaccctg ccatccgtca ccgccaagaa acgtggcggt cagttgttgt
     2881 ctgcgtgcct cacgcagcac cttgatgcct atgtcctcat cgctcgcgac gaatacgatg
     2941 tcgggagtgt gtgtcttgaa gtacgtgatg tacggctcga gattcgtgtc ggtgccgact
     3001 gggtccgtgc tcaggacctg gcctctgaaa ctgtgcagga atgcgtcgga gagtccccgc
     3061 ccgtaggaat cgttgtgata caggatcgcg actcttgtcg ggcgatggag cgagtcgctc
     3121 agcgacgatg cgaagcgggc gagcgtcatt ccgttcaccg agtcgctcgt gctcatgcga
     3181 aagacccacg gtgagatgcc tgttatgtcg ggtgaagacg gcgtcgttgc aacagccggc
     3241 agatgaccgc cgtcatacac gtgcgcagct gatacttcag cagcggagcc cgcatggccg
     3301 atcaccgcaa gaatctttcg gttcgctacg aactcaccgg cgacctgggc cgcgtcagct
     3361 ccgct
//
LOCUS       DATIMD010000181         2651 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2085642, whole genome shotgun sequence.
ACCESSION   DATIMD010000181 DATIMD010000000
VERSION     DATIMD010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2651
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2085642"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VLI40_04070"
     CDS             complement(<1..497)
                     /locus_tag="VLI40_04070"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSU96379.1"
                     /translation="MTTFMPRMFEGRTALVTGGGSGIGQRIAERLAEQGASVALVGRT
                     QSKLDAVAQGINGTGGKAAGFAADVRDYDALARATAAAHEMFGALGIVLCGAAGNFPA
                     FASAMSANAFKSVIDIDLLGTFNTCRAAFEHLDRPGASIVTISAPQAIQAMVMQAHVC
                     AAKAGV"
     gene            complement(499..1353)
                     /locus_tag="VLI40_04075"
     CDS             complement(499..1353)
                     /locus_tag="VLI40_04075"
                     /inference="COORDINATES: protein motif:HMM:NF004794.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crotonase/enoyl-CoA hydratase family protein"
                     /protein_id="HSU96380.1"
                     /translation="MSETEQRSSQQRSSHLALDVSVSDHIARVVLKGPGKGNALGPDF
                     WREAPGVFDELDTDPEVRAVVLSGAGGNFTFGLDLVAMTSELRYALAAPAMAAERTRF
                     LDQLTTMQHAITSLMSCRKPVVASISGWCVGAGIDVICAADVRVCSSDATFSVRAVRM
                     GIVEDMGSLQRLPAIIGEGAARELCLTGEDFDSAKAAALGLVNHVDDSPEAALQHALE
                     IATRIAANPPLTVQGVKRVMNERAHAGVRESLHYTALWNATFMQSRDFAEAISAFTEK
                     REPEFEGR"
     gene            complement(1350..1853)
                     /locus_tag="VLI40_04080"
     CDS             complement(1350..1853)
                     /locus_tag="VLI40_04080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSU96381.1"
                     /translation="MSDVRLRPALPADIPVILDLIRELAEYERDPAAAVATPDLMYEA
                     LFGPRAVAHVIMAEDDNATYGFALYFFNFSTWTGRRGLYLEDFFVRPAARARGIGLQL
                     FRRLAKIAQESGCARMELSVLNWNVNAIRFYEKQGGLAMNDWTHYRFGVDTIAQIASQ
                     ADETETR"
     gene            2023..2598
                     /locus_tag="VLI40_04085"
     CDS             2023..2598
                     /locus_tag="VLI40_04085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96382.1"
                     /translation="MTLSARSTALLKALPGTLLVICASACASSGTAHMSDDRTRIADV
                     NQTVVDVNLHHVASAGDRDVGVTVVQAFDALPAAYIKLGIKSAAVLDTTGGVYTVGAR
                     NLRLHGTLGGTHLSSYIDCGSGTMAPPADTYDIIFSASTYITARTGGSTLHTLVEASA
                     KDPMASSPRVRCTSTGRFERELATLVDSVKM"
BASE COUNT          499 a          876 c          791 g          485 t
ORIGIN      
        1 acaccggcct tggcggcaca cacgtgcgcc tgcatcacca tggcctgaat cgcctgcggc
       61 gctgatatgg tgacgatcga tgcgcccgga cgatccagat gctcgaacgc cgccctgcac
      121 gtgttgaatg tgccgagcag gtcgatgtcg atcaccgatt tgaacgcgtt cgccgacatc
      181 gcactcgcaa aggcgggaaa gtttccggct gcgccgcaga ggacgattcc gagcgcaccg
      241 aacatctcgt gcgctgccgc cgtcgcacgc gccaacgcgt cgtagtcgcg aacatccgcc
      301 gcaaaacccg ctgcctttcc gccagtcccg ttaatgccct gcgcgacggc atccagtttc
      361 gactgcgttc gtccgacaag cgcgacgctc gcgccctgct ccgcgagccg ctcggcgatc
      421 cgctgaccga tccccgatcc gcctccggta acgagggcgg ttcttccctc gaacatgcgc
      481 ggcatgaaag tagtcatgtc aacggccctc gaattctggt tcgcgctttt ccgtgaatgc
      541 gctgatcgct tccgcaaagt cgcgcgattg catgaacgtc gcgttccaga gagcggtgta
      601 gtgcagactc tcacgcactc cggcgtgcgc tcgctcattc atgacgcgct tgacgccctg
      661 cacggtgagc ggcggattgg cggcgattcg cgtcgcgatt tccagcgcgt gctgcaacgc
      721 cgcttctggt gagtcatcca cgtgatttac gaggccgagc gctgcggctt tcgccgagtc
      781 gaaatcctca ccggtgagac agagctcgcg cgccgcgccc tcgccgatta tcgcgggaag
      841 tcgctgcaga cttcccatgt cctcgacgat tcccatgcga actgcgcgca cggagaacgt
      901 cgcatcgctg gagcagacgc gcacgtccgc tgcgcagatg acgtcgatgc ccgcaccgac
      961 gcaccacccg gagatgcttg ccacaactgg cttcctgcac gacatgagcg acgtgatcgc
     1021 gtgctgcatg gtcgtgagct gatccagaaa gcgcgtgcgc tcggcggcca tcgccggtgc
     1081 agcaagcgcg taacgcagct ccgacgtcat tgcgacgagg tcgagtccga aggtgaagtt
     1141 gccgccggcg ccgctcaaca ccacggcgcg cacttcggga tccgtatcga gctcgtcgaa
     1201 tacaccgggc gcctcgcgcc agaaatcggg tccgagggcg ttacccttgc cgggcccctt
     1261 caacaccacg cgagcgatgt gatccgaaac gctcacgtcg agcgcgagat gcgagctgcg
     1321 ttgctgggag ctgcgttgct ctgtttcgct catctggtct ccgtctcgtc agcctgcgat
     1381 gcgatctgcg cgatcgtatc gaccccgaac cggtaatgcg tccagtcgtt catcgccaat
     1441 ccaccctgtt tttcatagaa ccggatcgcg ttgacattcc agttgagcac cgacagctcc
     1501 atgcgcgcac atccggattc ctgcgcgatc ttcgcgagac gtctgaagag ctgcaggccg
     1561 attccgcggg cacgtgccgc gggacgcacg aaaaagtctt cgagatacag gccgcgtctt
     1621 ccggtccagg tcgagaaatt gaagaagtag agtgcgaaac cgtacgtcgc gttgtcatcc
     1681 tccgccatga tcacgtgagc gacggccctg ggcccgaaca acgcctcgta catcaggtcc
     1741 ggagtcgcca ccgctgcagc cggatcgcgc tcgtattccg cgagctcacg gatcaggtcc
     1801 aggatgactg gaatgtcagc cggcagcgcc ggccgaagac gcacatcact catcatactt
     1861 ctcctcttcc aggattgcgc ggcgcaccgg catacgcgtg cggcatgcgc gtgcggcacc
     1921 ggaactgtat tttctacccg agctaaagct acgcgcggca gacaggaatg gcgcctgccg
     1981 gccggcgcgt gtttccggag cacatttgac gaggatgatc caatgacgtt gtcggcccgc
     2041 agcacggctc tgctgaaggc tctcccgggg actctgctgg tgatctgcgc cagcgcatgc
     2101 gcctcgtccg gcactgcaca catgagtgac gaccgcacaa gaatagctga cgtcaaccag
     2161 acggtcgtcg atgtaaacct gcatcacgtc gcatccgccg gcgaccgcga cgtcggagta
     2221 acggtggtcc aggcattcga cgctctgccg gcagcataca tcaagctggg catcaagagc
     2281 gcagcggtgc tcgacacaac gggcggcgta tataccgtcg gcgcgcggaa cctccgtctc
     2341 catgggacgc tcggcggcac gcacctgtcg tcgtacatcg actgcggcag cggcacgatg
     2401 gctccgccgg ccgacaccta tgacataatt ttctcggcga gcacatacat caccgcgcgc
     2461 accggcggct cgacgctgca cacgctggtc gaggcgagtg cgaaagatcc catggcgagc
     2521 tcaccgcggg tacgctgcac atcgacaggc cgcttcgaac gcgagcttgc gacgctggtg
     2581 gattctgtca agatgtaaac gaacagcgta tgcaggtatt gaatcgcgac gctatacgtc
     2641 actcttgtac a
//
LOCUS       DATIMD010000182         7145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1509391, whole genome shotgun sequence.
ACCESSION   DATIMD010000182 DATIMD010000000
VERSION     DATIMD010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7145
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1509391"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..546
                     /locus_tag="VLI40_04090"
     CDS             <1..546
                     /locus_tag="VLI40_04090"
                     /inference="COORDINATES: protein motif:HMM:NF014907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96383.1"
                     /translation="LVFGKRAGEHAALFASQNPAVQPHQDTIDVMASYALEPFDREGD
                     SVEGPYQVQHDLQGMMQDLVGIVRREDDMQKALSGLAVLRGRASRVSVPGNREYNPGW
                     HTALDLSNLLTISEAITRSALERKESRGGHFRDDYPDKDPAFAHFNTVVSRGPDGKMQ
                     VTRVPLPEMRDDLKQIIEEQK"
     gene            543..1394
                     /locus_tag="VLI40_04095"
     CDS             543..1394
                     /locus_tag="VLI40_04095"
                     /inference="COORDINATES: protein motif:HMM:NF009052.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HSU96384.1"
                     /translation="MTATESRTRDVAESGARAAARSNESAGTIAQSIAFQVWRGDSTS
                     GHFEEYRTAVSDGMVVLDAIHQIQSESANDLAVRWNCKAGKCGSCSAEINGMPRLMCM
                     TRLNQLDLDKPITVEPMRAFPLVRDLVTDVSSNFRQKKRIRQFTPRPPDAPDGTWRMA
                     QSDVDRIQEFRKCIECFLCQDVCHVLRDHHLHDEFVGPRLLVHAAQLEMHPLDVLDRT
                     GDLKDKHNIGYCNITKCCTKVCPENITITDNAIIPLKERVVDQHYDPLHKFVNLFRRK
                     EPARASS"
     gene            1391..1903
                     /locus_tag="VLI40_04100"
     CDS             1391..1903
                     /locus_tag="VLI40_04100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96385.1"
                     /translation="MTDKFQLKPISRAAIPSALQKAERYRLLNESWAAESICRDILAI
                     EPDNQQVLVMLLLALTDQLASGHGRVMHDVRETLSRLTDPYQRAYYTGIASERHGQEL
                     LRRVAMGSSTMAYNAFREAMEWYEKAEAIRPQDNDDSILRWNTCARVLSRESHLEPAV
                     VTEYEPVLGE"
     gene            2253..3713
                     /locus_tag="VLI40_04105"
     CDS             2253..3713
                     /locus_tag="VLI40_04105"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HSU96386.1"
                     /translation="MQYLLAICSLVLTACSGGSTEHAPASTATTQGDSTAAAAPAATH
                     QDWTQFNFDAERSGVDPASTGITAANVASLRKQKVSIDGTVDASAIYLHGASVSGGTH
                     DVFFVTTTYGKTLAIDADSGKVLWTYTPSGYSSWAGSRQITTATPVADPSRQFIYAAS
                     PDGHIQKLAVSDGHSVWSTAITKLPEREKIASSLNFFHGNVIAVTGGYIGDAPPYQGH
                     VAILDGASGKLLHVWNSLCSDQTVLIDPKSCPESDSAIWGRAGAVIDTTTGDIYVATG
                     NAKWDGKTYWGDATLELNPTATALIGNYTPSNTDQLSATDGDVGSTSPVLLGDGYVAQ
                     GGKDGTIRLLNPKVMGGATAHKGGELQVIKTPGSARLFTAPAVLHDGSNTSMFVADGS
                     GTAAWRFGDGKLRSMWQNGTGGTSPIVAGGLLYVYNPKGGLVVYEPSTGKQVANLDAG
                     GGHWNSPIVVDGRIALPEGSANDHSTSGTLDIWRAK"
     gene            complement(3736..5808)
                     /gene="dcp"
                     /locus_tag="VLI40_04110"
     CDS             complement(3736..5808)
                     /gene="dcp"
                     /locus_tag="VLI40_04110"
                     /EC_number="3.4.15.5"
                     /inference="COORDINATES: protein motif:HMM:NF007624.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-dipeptidase Dcp"
                     /protein_id="HSU96387.1"
                     /translation="MSTTSARVNPFFTASTLPFQAPRFDEIQETDYQPAIEEGMRQQM
                     LEIAQIIDNPAPPTFENTLVDLEKSGELLSRVMHVFSAITGANTSEFLQQVQEDVAPR
                     LAAHEDAIYLDRRLFERVQSIYDQRDTLSLDAESRRLLDWYYNDVFVQKGARLSEPDK
                     ATLMELNKEASTLETSFVNKLLAAAKAGALILSDRNALDGMSNAELSAAQRAAQERNL
                     DNAWVIPLQNTTQQPALLPLKNRDVRKRLYDASYNRAEKGDANDTRGLIARLAQIRAT
                     QAKLLGHASYAEWALTDQMAKTPEAALKFVRDLVPAATANARAEGDAIQAIIDGDGES
                     FQLEPWDWEHYAERVRRAKYDLDEEQIKQYFELDCVLQNGVFYAATRLYGITFTERHD
                     LPVYHPDVRVFEVTDADGSPLTLFYCDFFARPNKNGGAWMDSLVTQSRLLGAKPVVYN
                     VGNFTKPAPGDPALISFDDVTTMFHEFGHALHGFFADQQYPSLSGTSVARDFVELPSQ
                     FNEHWATEPTVFANYARHHHSGEPMPQDLTEKIKQAEKFNQGYRLTEVLAAALLDMAW
                     HTLPANTPLMDVDAFEAQALRDNDVDLRTVPPRYRSSYFMHIWSNGYSAGYYAYLWAE
                     MLDADAYEWFEENGGLTRENGDRFRAMILSRGNTEDLAAMYRAFRGRDPRIEPMLADR
                     GLLATEPK"
     gene            complement(5819..>7145)
                     /locus_tag="VLI40_04115"
     CDS             complement(5819..>7145)
                     /locus_tag="VLI40_04115"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HSU96388.1"
                     /translation="RVAVYDDYNGWDTMDFTDEQEFYSDFNDYDVTLNVPANYVVWGT
                     GTLLNAADVLQPAPLQRFNNSLTSDQVIHVATRQQMAGDSITVQKPTNAWHFRASNIP
                     DVAFAVSNHYDWDAASVIVDDAAHRRASVQSAFNDTAADYHHMVHFGQHALDWLSHNW
                     PGVPYPYEKTTIVQGSADMEYPMMVNDGSTPDTVFSRFVVEHEIAHTYFPFYMGTNET
                     RYGFMDEGWATTFEYLVGTADLGKERASTFFQQFRVNGWIHDPSPLEDLPIVTPGDVL
                     KGVAYGNNAYGKPALGYLAMKDLLGDAQFKKCLQAYMDRWHGKHPNPWDFFNTFSNVS
                     GRNLNWFWNDWYFSNNYIDLAVAGVNKTRNGYSVVINNIGGMDAPVDIRVKYTDGDSA
                     TFHQTPAIWEANQQKATVTIPATKTISALDLDGGIWVDADTTNNRWARK"
BASE COUNT         1413 a         2087 c         2215 g         1430 t
ORIGIN      
        1 ctggttttcg gaaagcgcgc aggggagcac gcggcattgt tcgcgagtca gaatcctgct
       61 gtccagccgc atcaggatac gatagacgtg atggccagtt atgcactgga gccgttcgac
      121 cgagagggcg acagtgtcga gggtccgtat caggtgcagc atgatcttca gggaatgatg
      181 caggatctcg tcggcatcgt tcgcagggag gacgacatgc agaaggcgtt gagcgggctc
      241 gcagtcctgc gcggtcgtgc gtcgcgtgtg tcggttccag gaaatcggga gtacaatccg
      301 ggatggcaca ccgcactcga tctgtccaac ctgctcacga tctcggaggc gataacacgt
      361 tccgcgctgg agcggaagga gagtcgcggt gggcacttca gggatgatta tcccgacaag
      421 gatcccgcat tcgcccactt caacacagtt gtgagtcgcg ggccggacgg aaagatgcag
      481 gtgacgcgcg ttccgctgcc cgagatgcgc gacgatctga agcagataat cgaggagcag
      541 aaatgactgc tacggaatca cgaacgcgcg acgtcgccga gagcggcgcg cgtgccgctg
      601 cgcggagcaa cgagagcgcc ggaacgatcg cgcagagtat tgcatttcag gtgtggcgtg
      661 gcgacagcac atccgggcac ttcgaggaat accgaaccgc tgtgtcggat ggaatggtcg
      721 tgctcgacgc cattcatcag atccagtccg agagcgcgaa cgacctggca gtccgctgga
      781 actgcaaggc tggcaagtgc ggatcgtgct ccgccgagat caacggcatg ccgcgtctca
      841 tgtgcatgac gcggttgaat cagctcgatc tcgacaagcc gataactgtc gagccgatgc
      901 gcgcgtttcc gctggtgcgc gatctcgtta ccgacgtttc gtccaacttc aggcagaaga
      961 agcgcatcag gcaattcacg ccgcggccac cggacgctcc cgacggaacg tggcgcatgg
     1021 cgcagagcga tgtcgacagg attcaggaat tcaggaagtg catcgaatgc ttcctgtgcc
     1081 aggatgtgtg tcacgttctg cgggaccatc acctgcatga cgaatttgtg ggaccgcgcc
     1141 tgctggtaca tgctgcgcag ctggagatgc atccgctcga cgtgctggat cgtacgggag
     1201 atctcaagga caagcacaac atcggttact gcaacatcac caagtgctgc accaaggtgt
     1261 gtcccgaaaa catcacgatc accgacaatg cgataattcc gctcaaggag cgtgtggtcg
     1321 atcagcacta cgatccactg cacaaattcg tcaatctgtt tcgtcgcaag gaaccagcga
     1381 gggcgtcatc atgaccgaca aattccaact gaagccgatc tcacgggcgg cgattcccag
     1441 cgcacttcag aaggcggaac gctacaggtt gctcaacgaa tcatgggcag ccgagagcat
     1501 ctgtcgggac attctcgcga tcgagcccga caatcagcag gtactggtga tgctgctgct
     1561 ggcgctcacg gaccagcttg cgagcggaca cggtcgtgtg atgcacgacg ttcgtgaaac
     1621 cctgtcgcgt ctcacagatc cgtatcagcg agcgtattac accggcatcg cgtcggagcg
     1681 acacggtcag gaattgctgc gtcgcgttgc gatgggcagt agcacgatgg cgtacaatgc
     1741 ctttcgcgag gcgatggagt ggtacgagaa ggccgaggca attcgcccgc aggacaatga
     1801 tgactcgatc ctgcgctgga atacgtgcgc gcgggtgttg tcgcgcgaga gccatctcga
     1861 gccggctgtc gttacggagt acgagccggt gctgggggag taaggaagag gaatcgttat
     1921 tctcgctgta gctcgggaat ccatgtgtcc gtcgtcattc ccgcggaagc gggaatccat
     1981 gttatcgatc tttgaatgcg atgagagcag aaagcgggtc ggcagcagat ggattcccgc
     2041 tttcgcggga atgacagatc tgtggcgctt tatcggggat gacggctctc tgagccagct
     2101 ttcgcgggaa tgacggctct ctgagccagc gttcgcgggg atgacgagct cggggagcgg
     2161 agacgacggt acctcggcac ggccgatgca ggttatccgg ctgacgttcc atctcccgac
     2221 aaaatcaacc cgggttaccg acccgaggcg aaatgcagta cctcctggcc atctgttctc
     2281 tcgtgttgac cgcctgcagt ggcggatcga ccgagcacgc acctgcgagt acagctacaa
     2341 cccaaggcga ctctaccgcc gccgcggcgc ctgccgccac acatcaggac tggacccagt
     2401 tcaacttcga cgctgaacgc tccggcgtcg atcccgcgtc caccggaatc actgccgcca
     2461 atgtcgcatc gctcaggaag caaaaagttt cgatagacgg aactgtcgac gcttcggcca
     2521 tctacctgca cggcgcgagt gtgagcggtg gcacccatga cgtgttcttt gtcaccacga
     2581 cgtacgggaa gacgctggca atagacgccg acagtggcaa ggtgctctgg acctacacgc
     2641 catccggtta cagcagctgg gccggctccc ggcagattac caccgcgacg cccgtagctg
     2701 accccagccg gcaattcatc tacgcggctt cgcccgacgg gcacattcag aagctcgccg
     2761 tatcggatgg acactccgtc tggagcactg ccattaccaa gcttccggaa cgcgagaaga
     2821 tcgcttcgtc gctgaacttc tttcacggaa acgtgattgc ggtgaccggc ggttacatcg
     2881 gagacgcgcc gccctaccag ggtcacgttg ccatcctgga tggcgcgagc ggcaagctgc
     2941 tgcacgtgtg gaattccctg tgcagcgatc aaaccgtact gatcgatccc aaatcctgtc
     3001 ctgaaagcga ctcggcgatc tggggccgtg ccggcgctgt aattgacacc actacgggcg
     3061 acatttatgt cgccacgggc aacgccaagt gggatggcaa gacgtactgg ggcgacgcga
     3121 cgctcgagct caatccgaca gcgaccgctc tcatcggcaa ttacacgccg tcgaacaccg
     3181 atcagctgag cgcaaccgat ggcgacgtgg gatcgacatc gccggtgctg cttggtgatg
     3241 ggtatgtggc tcagggcggg aaggacggca cgatcagatt gctgaatccg aaggtgatgg
     3301 gaggcgctac agctcacaag ggcggcgagc tgcaggtgat caagacgccc ggaagcgcgc
     3361 gactctttac cgcgccggcc gtgctgcacg acggctcgaa tacatcgatg ttcgtcgccg
     3421 acggaagtgg caccgctgca tggcgattcg gcgacggcaa gctgcgatcg atgtggcaga
     3481 acggaaccgg tggtaccagt ccgatagtcg ccggcggtct gctatacgtc tataatccca
     3541 agggcggctt ggtggtgtat gagccgagca ccggtaagca ggttgcgaac ctcgacgccg
     3601 gtggcggcca ctggaacagc ccgatcgtcg ttgatggaag aatcgcgctt ccggaaggta
     3661 gcgcgaacga tcacagcacc agcggcacgc tggacatctg gcgcgcgaaa taaaccgagc
     3721 gagcgcgctg tagcgctact tcggttccgt ggccagcaac ccgcgatccg cgagcatcgg
     3781 ctcgatacgc ggatcgcggc cacggaacgc acggtacatc gcagcgagat cttcggtatt
     3841 tccacgcgat agaatcatgg cccgaaagcg atcgccgttc tcgcgcgtga gtccgccgtt
     3901 ctcctcgaac cactcgtacg catcggcgtc cagcatctcc gcccacagat acgcgtaata
     3961 tccggcggag taaccgttgg accagatgtg catgaaatag ctggaacggt agcgcggcgg
     4021 aacggtgcgc aggtcaacgt cgttgtcacg caacgcctgc gcctcgaacg catccacgtc
     4081 catcagtggc gtgttcgcgg ggagagtgtg ccatgccatg tcgagcagcg ctgccgcaag
     4141 aacctcggtc agccggtagc cctggttgaa cttctccgcc tgcttgatct tttccgtgag
     4201 atcctgcggc atcggctcgc cgctgtgatg gtgcctcgcg tagttcgcaa acactgtcgg
     4261 ctcggtcgcc cagtgctcat tgaactgtga tggcagctcg acgaagtcac gcgcaacgct
     4321 ggttcccgac agactcggat attgctggtc tgcaaagaat ccgtgcagcg cgtgcccgaa
     4381 ttcgtggaac atcgtcgtga cgtcatcgaa gctgatcagt gccgggtcgc ccggtgccgg
     4441 ctttgtgaag ttgccgacgt tgtagaccac cggttttgcg ccgagcagtc tggattgcgt
     4501 gaccaggctg tccatccacg ccccgccgtt cttgttcggg cgcgcgaaga agtcgcagta
     4561 gaagagcgtc agcggtgacc cgtcggcatc ggtcacctcg aatacacgca cgtccggatg
     4621 atacacgggc agatcatgcc gctccgtgaa cgtgatgccg tacaggcgag tcgccgcgta
     4681 gaacacgccg ttctgcagta cgcagtccag ctcgaaatac tgcttgatct gctcctcgtc
     4741 gagatcgtac ttcgctctgc ggacgcgctc ggcgtagtgt tcccaatccc acggctccaa
     4801 ctggaacgac tcaccgtcgc cgtcgattat cgcctggatc gcgtcacctt ccgcgcgcgc
     4861 gttagcggtg gcggcaggga ccagatcgcg cacgaacttc agtgccgctt ctggagtctt
     4921 cgccatctga tccgtcagcg cccattcggc gtagctggca tggcccagca gcttcgcctg
     4981 cgtcgcccga atctgcgcaa gccgcgcgat gaggccgcgt gtatcgttcg cgtcaccctt
     5041 ctccgcgcga ttatacgacg cgtcgtacaa tcgcttgcgt acatcacggt tcttcaacgg
     5101 taggagcgcc ggttgctggg tcgtattctg aagcgggatg acccacgcgt tgtcgagatt
     5161 gcgctcctgc gcggctcgtt gcgctgcaga gagctcggcg ttgctcattc cgtcgagcgc
     5221 attacggtcg ctcagtatca gcgcgccggc cttcgccgca gcaagcagct tgttgacgaa
     5281 cgaagtctcg agtgtcgacg cttccttgtt cagttccatc agcgtcgcct tgtcgggctc
     5341 ggagagtctg gcgcccttct gtacgaatac gtcgttgtag taccagtcga gcaggcggcg
     5401 tgattccgcg tcgagactca gcgtatcgcg ctgatcgtag atcgattgca cgcgctcgaa
     5461 aagccggcga tcgaggtaga tcgcatcttc gtgcgcggca agtctgggcg cgacgtcttc
     5521 ctgaacctgc tgcaggaact cgctcgtatt ggcgccggtg atcgcgctga atacgtgcat
     5581 cacgcggctc aacagttcac cagacttttc cagatccacg agcgtattct cgaacgtagg
     5641 cggagcagga ttgtcgatga tctgtgcgat ctccagcatc tgctggcgca ttccctcctc
     5701 gatcgccggc tggtagtcag tctcctggat ctcatcgaag cgcggcgcct ggaacggcag
     5761 cgtgctggcg gtgaagaatg gattcacgcg cgccgaggtc gtgctcatac cgccgccact
     5821 acttgcgcgc ccatctgttg ttcgtggtat ctgcatccac ccagatccca ccgtcgagat
     5881 cgagtgcgct gatggttttg gttgcaggga tcgtgaccgt cgccttctgc tgattggcct
     5941 cccagatcgc gggcgtctgg tggaaagtcg cagaatcgcc atccgtgtac ttcacacgaa
     6001 tgtcgactgg agcatccatg ccgccgatgt tatttatcac gaccgaataa ccattgcggg
     6061 tcttgttgac gcccgcgact gcgaggtcga tgtagttgtt gctgaagtac cagtcattcc
     6121 agaaccagtt cagattcctg ccggatacgt tgctgaaggt attgaagaaa tcccacgggt
     6181 tggggtgctt gccgtgccag cgatccatgt acgcctgcag acatttcttg aattgcgcgt
     6241 cgccaagcag gtccttcatg gccaggtaac caagtgcagg cttgccgtac gcattgttgc
     6301 cgtacgcgac acccttgagc acatcaccgg gtgtgacgat cggcaggtct tcgagtggcg
     6361 atggatcatg gatccagccg ttgacccgga attgctggaa gaaggtggaa gcacgttcct
     6421 tgccaaggtc ggccgttccg acgaggtatt caaaggtcgt agcccagccc tcgtccatga
     6481 acccgtatcg tgtttcgttc gtccccatgt agaacgggaa gtatgtgtgc gcgatctcgt
     6541 gctcgacgac gaagcgggag aatacggtgt cgggtgtgct gccgtcgttg accatcatgg
     6601 gatattccat gtcggcggag ccctgcacga tagtcgtctt ctcgtacggg tagggaacgc
     6661 cgggccagtt gtgcgagagc cagtcgagcg cgtgctggcc gaagtgcacc atgtgatggt
     6721 aatcggcggc cgtatcgttg aacgctgact gaacactggc gcgacgatgc gccgcgtcat
     6781 cgacgattac gctggcggcg tcccagtcgt agtggttgct gacggcgaag gcaacgtcgg
     6841 ggatgttgct ggccctgaag tgccacgcat tcgtcggctt ctgcacggtg atgctgtcgc
     6901 cggccatctg ttgccgcgtg gcgacgtgga tcacctggtc ggacgtgagc gaattgttga
     6961 agcgttgcaa cggcgcgggc tgcaggacat cggcggcgtt gagcagtgtg ccggtccccc
     7021 acaccacgta attcgcggga acgttcagcg taacgtcgta atcgttgaag tcgctgtaga
     7081 actcctgctc atccgtgaag tccatcgtgt cccaaccgtt gtagtcatcg tagacagcaa
     7141 cgcgc
//
LOCUS       DATIMD010000183         3978 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4395685, whole genome shotgun sequence.
ACCESSION   DATIMD010000183 DATIMD010000000
VERSION     DATIMD010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3978
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4395685"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1674)
                     /locus_tag="VLI40_04120"
     CDS             complement(<1..1674)
                     /locus_tag="VLI40_04120"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96389.1"
                     /translation="MTISRLIATAIGLAVLTPVASSIATAQSTDALYAEMHWREIGPT
                     RGGRARALSGVAGQPNVFYVGYDNGGVWRSTDYGSNWVPLFDNEPTGSIGAIAVAPSD
                     PNIIYVGTGAGIIRPDLSVGDGVYKSTDAGKTWTHLGLRETQMIANIEVDPTNPNRLF
                     VAALGHPYGPNAERGIFRSTDGGKTFEKVLYKDEYVSGNDVRIDPKNPNIVYAALWQQ
                     QQSYIEGAEFGGTEGGIFKSTDGGTTWKQLTNGLPAGVIEANLGVSMSAPSTIYAMVA
                     GTSGSATPARGGTTGSIGFYKSTDAGEHWTLAARDANNPAASPSATLDPRPLVRIGGG
                     DLPTIAVDPKNPNVVYSASTVFWRTEDGGVTWSAVRGAPGGDDYQKAWINPNDTNILL
                     VVADQGAVVSGNRGVSWSNWYNQPTAAMYHVSTDDAFPYRVCGGQQDSGSACVDSRSM
                     DGEITFHDWHPVNIQEYGVAASDPKNPELVFGSQRTNISLYNRTTGQTTLVGPDAEAR
                     GTQFGRNVRTMPIMWSPVNHNVLFYTSNVVWKSTDQAHSWTRISPDLARQ"
     gene            complement(1837..2763)
                     /locus_tag="VLI40_04125"
     CDS             complement(1837..2763)
                     /locus_tag="VLI40_04125"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HSU96390.1"
                     /translation="MKRTSSIIGVAALMAQFVSASVASAQMHSVSGDIWTEADSGRIV
                     HASSATVYLWPEITAVTSVINSACAAYRTDTTSWMTARETLNDTGSAVPASAAVMRDQ
                     TLLHSIAQLPHAMVQADSLGHFVFDSIPPGTYWIEAETLQNGRIVQWWKQTALLSLPF
                     RIGGRNSAELGSARLGPLEYHSSQFCTEPEARVGASAFVNDTPLTPAGRVYEPSELDR
                     GVKIIYSGDRTQYPESMRKTGTPGDVVLSFVVDAEGNVEMDGIRVVRSTAPEFVDPAK
                     RTLATMRFVPAEANGKPVRSRVSETFNFSVRP"
     gene            complement(2760..2942)
                     /locus_tag="VLI40_04130"
     CDS             complement(2760..2942)
                     /locus_tag="VLI40_04130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96391.1"
                     /translation="MRYSRMVVTATPVSPSVMVTDSHGGHPVGITVTFTPDSGAGSVS
                     TPSAKTDSAGVASAAK"
     gene            complement(3022..>3978)
                     /locus_tag="VLI40_04135"
     CDS             complement(3022..>3978)
                     /locus_tag="VLI40_04135"
                     /inference="COORDINATES: protein motif:HMM:NF021361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2059 domain-containing protein"
                     /protein_id="HSU96392.1"
                     /translation="SDTGSPTWPFAKAVATRAWSIWRETPVTRTFIPPQPYIAMIARR
                     QVALGVISVCCCLTAVKVAGQTPAASPPASDTAGSHVRAAERFLVVTGAEKTMNEQMD
                     QVLQVQLRRSPAMAQLLAPQQAIMRKYMTYEAVKPDLIKAYTATYSESELNRLVAFYQ
                     TDLGKMMLERAPKVVELTRTATEERMKAAEPELREAISRSITAQFSNPASDGLQRSAS
                     TYFTFQVEKPAVPLDTSTTLAYPASLRGADIGEGQVALQFVVDTTGAIEMGTTKVLRA
                     TYDFIVPIARQHLAALRFFPAQRNGQKVRQLVQMTFRFEPSP"
BASE COUNT          756 a         1229 c         1166 g          827 t
ORIGIN      
        1 ctggcgcgcg agatcaggac tgatccgcgt ccagctgtgc gcctgatcgg tcgacttcca
       61 caccacgttc gacgtataga agagaacgtt gtgattcacc ggcgaccaca tgatcggcat
      121 cgtgcgcacg ttgcgtccga actgcgtgcc gcgcgcttcc gcgtcgggac ccacgagcgt
      181 cgtctgaccg gtcgtgcggt tgtacaacga gatgttggtg cgctggcttc cgaacaccag
      241 ctccggattc ttgggatcgc tcgccgcgac gccgtactcc tgaatgttca ccggatgcca
      301 gtcgtggaac gttatctcgc cgtccatcga tcggctgtcc acgcacgccg atccggaatc
      361 ctgttgcccg ccgcagacgc gatatggaaa tgcgtcgtcg gtcgacacgt ggtacatcgc
      421 cgctgtcggc tgattgtacc agttgctcca tgacacgcca cgattgcccg agacgaccgc
      481 gccctgatcc gcaactacga gcagaatgtt cgtgtcgttc ggattgatcc aggccttttg
      541 atagtcgtcg ccgcccggcg cgccacgcac tgcgctccac gtgacgccac cgtcttcagt
      601 gcgccagaac actgtcgatg cactgtacac aacattcgga ttctttggat ctacagcgat
      661 cgttggaaga tcaccgccgc cgatacgcac gagtggacgc ggatccagcg ttgcactcgg
      721 tgacgccgct ggattgttgg catcgcgggc tgcgagtgtc cagtgctcgc ccgcatcggt
      781 cgacttgtag aagccgatcg atcccgtagt tccgccgcga gccggcgtcg ccgacccgga
      841 cgtgcccgcc accatcgcat agatggtgct cggcgcgctc atcgaaacgc cgaggttcgc
      901 ttcgatgaca ccagccggaa gtccgttcgt gagctgcttc caggtcgtgc caccatcggt
      961 cgacttgaag atgccaccct cagtaccgcc gaactccgca ccttcgatgt aactctgctg
     1021 ctgctgccat aacgccgcgt aaacgatgtt cggattcttt ggatcgatgc gaacgtcgtt
     1081 gccactcacg tattcgtcct tgtacaacac cttctcgaaa gtcttgccgc cgtcagtcga
     1141 gcggaatatt ccacgctctg cgttcggacc gtatggatga ccgagcgcag ctacgaagag
     1201 ccgattcgga ttggttggat cgacctcgat gttcgcgatc atctgcgtct cgcggagacc
     1261 cagatgcgtc caggtctttc cggcgtcggt cgatttgtac acgccgtcgc cgaccgacag
     1321 gtccggccgg atgattccgg cgcccgtccc tacatatatg atgttcggat ccgacggtgc
     1381 gacagctatc gcgccgatcg acccggttgg ttcgttatcg aacagaggta cccagttcga
     1441 gccgtagtca gtggaccgcc agacgccgcc attgtcgtag cccacataga agacgttggg
     1501 ctggccggcg acccccgaga gcgcccgggc gcgcccgccg cgcgtgggcc cgatctcgcg
     1561 ccagtgcatc tcggcgtaga gggcatcggt ggattgagcc gtggcgatgg agctggcaac
     1621 aggtgtgagc accgccagac caatggcggt agcgatcaag cgggaaatcg tcattcggaa
     1681 taggccttcg gaaaggatgc tgggcggaaa ctggactgag actggaagtt ctgactgcga
     1741 aaatactcgc cgattaaagt acgcgttagg cgccgcggca gttgccccca aggctacaga
     1801 atgaaagcgt cgagctctgc cagcaacgat tggcagctac ggtcggacgc tgaagttgaa
     1861 cgtctcgctc acccgtgacc gaaccggctt gccattggcc tcggctggaa caaaccgcat
     1921 cgtggccagc gtgcgttttg cggggtctac gaattccgga gcggtggatc gtaccactcg
     1981 tatgccgtcc atttccacat tcccttcggc atcgaccacg aaactgagga cgacgtcgcc
     2041 gggcgtgccc gtcttgcgca ttgattccgg gtattgagtc cgatcgccac tgtagatgat
     2101 cttcacaccc ctatccagct cgctcggttc gtaaacccga cccgccggcg tcagcggcgt
     2161 atcgttcacg aacgcggatg cacctacgcg cgcttccggc tctgtgcaaa attgcgatga
     2221 gtgatactcg agcggcccga gacgcgccga gcccagttca gcggagttcc tcccgccgat
     2281 acggaatgga agactcaaca gcgcggtttg cttccaccac tgaacgattc tgccgttctg
     2341 tagtgtctcg gcttcgatcc agtatgtgcc gggcggaatc gagtcgaaga caaagtgacc
     2401 cagcgagtcc gcctgcacca ttgcatgtgg gagttgcgcg atcgagtgca gcagagtctg
     2461 gtcgcgcatg acagctgcgc ttgcaggaac ggccgagccg gtatcgttca gcgtctcgcg
     2521 cgcggtcatc caggatgtcg tgtcagtcct gtacgccgcg catgcagaat ttatcacgct
     2581 cgttacggca gtgatctcgg gccagaggta caccgtcgcg ctcgaagcgt ggacgattcg
     2641 gccactatcc gcttctgtcc agatgtcacc gctgacgctg tgcatctgcg ccgaagcaac
     2701 tgacgcagat acgaattgcg ccatcaatgc cgcgacgccg atgatcgagg atgtccgttt
     2761 cattttgcgg cggatgcgac accggcgcta tcggttttag cgctcggcgt cgagacgctg
     2821 cctgcgccgc tgtcgggcgt gaacgttacc gtgatgccaa ccggatgtcc gccgtgacta
     2881 tcggtcacca ttaccgacgg gctaacgggc gttgccgtga cgaccatgcg tgaatatcgc
     2941 atggaaagca atactgcgat tcgctgggac ttccgtcaat acaacaaaac gttacacctt
     3001 cgacacctcg cacaccacac atcatgggct tggctcgaat ctgaacgtca tctgcacgag
     3061 ctgccttacc ttctgaccgt ttctttgtgc cggaaagaaa cgcagcgccg ccaagtgctg
     3121 gcgagctatc ggcacaatga aatcgtacgt cgctcgcaga accttcgtgg ttcccatctc
     3181 gatcgctccc gtagtgtcga ccacgaactg cagcgcaacc tggccctctc cgatatcggc
     3241 gcccctgagt gacgcaggat acgcgagcgt agtggacgta tcgagtggaa ccgccggctt
     3301 ctccacctgg aacgtgaagt aagtgctggc ggatctttgc aaaccgtcac tcgccggatt
     3361 tgaaaattga gcggtaatcg aacgactaat tgcctcccgc aactccggct ccgccgcctt
     3421 catccgctcc tctgtcgcgg tcctagtcag ctcgacgact ttcggcgcgc gctccagcat
     3481 cattttgccg agatcggtct gataaaacgc gacgagtcgg ttcagttcac tctcgctata
     3541 ggtcgcagtg tacgccttga tcagatcggg cttgactgct tcgtaggtca tgtacttgcg
     3601 catgatcgcc tgctgtggcg cgagcagttg cgccattgcc ggactgcgcc tgagctgaac
     3661 ctgaagcacc tggtccatct gctcattcat cgtcttctct gcgccggtca cgacgagaaa
     3721 ccgctccgca gcgcgcacat gactcccggc agtgtcgctc gcgggagggc tggctgctgg
     3781 tgtctggcca gcaaccttga ctgccgtgag acagcagcaa actgaaatca ctccgagcgc
     3841 tacctgccgg cgtgcgatca tggcgatata gggttgggga gggataaaag tgcgcgtaac
     3901 tggcgtttca cgccagatcg accaggcacg ggtggcgacg gccttagcga atggccaggt
     3961 cggtgagccg gtgtcaga
//
LOCUS       DATIMD010000184         2897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_931859, whole genome shotgun sequence.
ACCESSION   DATIMD010000184 DATIMD010000000
VERSION     DATIMD010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2897
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_931859"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="VLI40_04140"
     CDS             <1..254
                     /locus_tag="VLI40_04140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96393.1"
                     /translation="FGPANRDLARHLEDIDFADMLPTQSNITAVETNCREVDDASVAL
                     SQAQSSIQSFDALLAHAGMQPLPALRAPAAGACTVHEVK"
     gene            complement(336..734)
                     /locus_tag="VLI40_04145"
     CDS             complement(336..734)
                     /locus_tag="VLI40_04145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="group III truncated hemoglobin"
                     /protein_id="HSU96394.1"
                     /translation="MSDANVIRRDIRDEDLNDVLTEFYAIIGADPLLARYFAEVDMSE
                     HMPKIVAFWSTLLFRTRSYTGNAFRPHMAMPGLTGAHFARWVGTLESVVDARFAGPSA
                     SLMKELAHRIAYGMQLRLGISPFEPFRATA"
     gene            complement(743..1123)
                     /locus_tag="VLI40_04150"
     CDS             complement(743..1123)
                     /locus_tag="VLI40_04150"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSU96395.1"
                     /translation="MNRTIEGEVLVHHLSQDELIIDRELLAQRDRTARTLVKEGPLRL
                     VLMALPPGGDLPPHSADRPVTVHVTDGEVTFRAIEMEYQLVKGDVLVFAGGVEHSASS
                     KDGCVFLLTVVHGNTNADAAPPHV"
     gene            complement(1235..2422)
                     /locus_tag="VLI40_04155"
     CDS             complement(1235..2422)
                     /locus_tag="VLI40_04155"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSU96396.1"
                     /translation="MKESLANVFVTQNYPPVGGGMARRHAELVRRYGEPMDVSTVACD
                     DSAALDALEGYRIDRQEFPFSSAKLFANEIRWGRWLARRCTTGIDVIHCGEIRPVGYA
                     VWWAHKRTAVPYVIYVNGGDLLRERRKTAAHWSKRISAYRLLSDAAGIVANSEWSASL
                     TRDIMGEIGITSPPPVAAIDLGTDPAHFTPAGATGRLRAQLELGDAPIMLSVARLVPH
                     KGQDAAIKVLAALENEFPRLHYVIVGQGDDELRLRALAETLRVADRVHFVGQLDDEGL
                     ADAYATSTVYIGLSRLDNEINVEGFGISFVEAGASGIPVVAGDSGGVRAAVRDGETGF
                     VVDPLDVLAATAAIGSILRDDTLRSRLGSAGRAAVESHYNWDRVAVETRDFVHECVGP
                     LRG"
     gene            complement(2419..>2897)
                     /locus_tag="VLI40_04160"
     CDS             complement(2419..>2897)
                     /locus_tag="VLI40_04160"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HSU96397.1"
                     /translation="NLSASEQKRRWPDNRFIAVLSAVRDAHPGVPIIVIGLPGEWESV
                     QAVAEAVNGEPIETPQLRDALALVATCDHVFTPDTSISHVASAFNKPAVVLLRGDCWQ
                     YAPWDVQGEVVFWSGETISRLGVEDVLPAVMRLCELPSDRDAMQHYDLASRQRTAG"
BASE COUNT          558 a          967 c          863 g          509 t
ORIGIN      
        1 gtttcggtcc cgcgaacagg gatcttgcac gtcacctcga agacatcgat ttcgccgaca
       61 tgctcccaac gcagagcaac atcaccgcgg tcgaaacgaa ctgtcgcgag gtcgacgatg
      121 cgagcgtcgc attgtcgcag gcgcagagtt cgatccagtc attcgatgcg ttgctggcgc
      181 acgctggcat gcagccactg ccggcgttgc gggcgccagc ggccggagcg tgcacggtgc
      241 atgaggtgaa atagaggcga agtaaagagg agagcgccgg agatcctcat acccgcgcag
      301 catttacaac tgcgcggtgg tctccggcgc tcctctcatg ccgtcgcgcg aaagggctcg
      361 aacggtgaga taccgagcct cagctgcatg ccgtacgcga tgcggtgtgc aagctccttc
      421 atcaacgacg cggacggccc tgcaaaccgc gcatccacta cgctctcgag cgttccgacc
      481 cagcgcgcga agtgcgctcc ggtgagtccc ggcatcgcca tgtgcggtcg gaacgcattg
      541 ccggtgtagc tccgcgtacg gaacagcagc gtcgaccaga acgccacgat cttcggcatg
      601 tgctccgaca tgtcgacttc cgcgaagtac cgcgcgagca gcggatcggc tccgatgatc
      661 gcgtagaact cggtcagaac atcattcaga tcctcgtcgc gaatgtcgcg acggatcacg
      721 ttcgcatcag acaacggtca cctcagacgt gcggcggtgc cgcgtccgcg ttggtgttgc
      781 cgtgcacgac cgtgagcagg aacacacaac cgtccttcga cgacgccgaa tgctccacac
      841 cgcccgcgaa gacgagaaca tcgcccttca cgagctgata ctccatttcg atcgcacgga
      901 atgtcacctc gccatcggtc acgtgaaccg taacgggtct gtcggcgctg tgcgggggaa
      961 gatcgccacc agggggaagc gccatcagca cgaggcgaag cggtccttcc tttacgagcg
     1021 tccgcgctgt ccggtcgcgc tgcgcgagaa gctcacggtc gattatgagc tcatcctgcg
     1081 acagatgatg gacgagaacc tcgccttcga tcgttcggtt catcgacgac atgaatgctc
     1141 cgtgaaaggt ggcgcggtcg cacccgctac cgaaatgaat gcccggggga attgcttgtc
     1201 aatcaccaga cgacccgcgc tgctcatggc gacgctaccc acgcagcgga ccaacgcact
     1261 cgtggacgaa gtcacgcgtc tccaccgcta cacgatccca gttgtaatgc gactccactg
     1321 ccgcgcggcc cgccgagccc agtcgcgagc ggagcgtgtc gtcgcgaagg atgcttccga
     1381 tcgctgccgt cgccgccaga acatcgagcg gatcgacgac gaaccccgtc tcgccatcgc
     1441 gaacggccgc gcgcacgccg cccgaatcgc ccgcgacgac cgggattcca ctcgcgccag
     1501 cctcgacgaa cgagatcccg aatccttcga cgtttatctc gttgtcgagc cgcgaaagtc
     1561 cgatgtaaac ggtggacgtc gcgtacgcgt ccgccagccc ctcgtcgtcc agctggccaa
     1621 cgaagtgcac gcgatctgcc acacgcagcg tttccgccag tgcgcgcaga cgtagttcgt
     1681 cgtcgccctg tccaactatt acgtagtgca gtcgggggaa ttcattttcc agcgccgcca
     1741 gcaccttgat cgcggcgtcc tgccccttgt gcggaacgag acgcgcgacg gacagcatga
     1801 tcggtgcatc gcccagctca agctgcgcgc ggagacgacc ggttgcgcca gcgggcgtga
     1861 aatgcgcagg atccgttccg agatcgatcg cagcaactgg cggcggactt gtgatcccga
     1921 tctcgcccat gatgtcgcgc gtgagcgatg ccgaccattc cgagttggca actattcccg
     1981 ctgcatcgct cagaagacga tacgcgctta ttcgcttgct ccagtgcgcc gccgtcttgc
     2041 gtcgctcgcg caggaggtct ccgccgttca cgtagatgac gtacggaacg gcggtgcgtt
     2101 tatgcgccca ccacacggcg taaccgacgg gacggatctc tccgcagtgg atcacgtcga
     2161 tgccagtcgt acagcggcgc gcgagccagc gtccccagcg tatctcgttg gcgaacagct
     2221 tggccgacga gaacggaaac tcctggcgat ctatccggta accttccagc gcgtcgagcg
     2281 ccgcggaatc atcacacgcc acggtggaca catccatcgg ctcgccatag cgacgaacca
     2341 gctcggcgtg ccgtcgcgcc attccgccgc ctaccggcgg gtagttctgt gttacgaaaa
     2401 cattggcgag cgattccttc atccagctgt gcgttgccgc gatgcgagat cgtagtgctg
     2461 catcgcgtcg cggtcggatg gcagctcgca cagccgcatc acagcgggca atacatcttc
     2521 cacgccgagt cgcgagatcg tctctccgct ccagaagacg acttcgccct gcacatccca
     2581 tggcgcgtac tgccagcagt caccgcgcag cagtaccact gcgggcttgt tgaacgcgct
     2641 cgccacatgc gagatgctgg tatcgggcgt gaacacgtgg tcgcacgtcg caacaagcgc
     2701 aagtgcgtcg cgcagttgcg gcgtctcgat cggttcgccg ttcactgcct ccgccaccgc
     2761 ctgcacactc tcccactcac cgggaaggcc gatcacgatg atcggcacgc cgggatgcgc
     2821 atcgcgaact gcgctgagca cagcaatgaa gcgattgtcc ggccatcgcc gcttctgttc
     2881 agacgccgag agattca
//
LOCUS       DATIMD010000185         4634 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3242483, whole genome shotgun sequence.
ACCESSION   DATIMD010000185 DATIMD010000000
VERSION     DATIMD010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4634
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3242483"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..424
                     /locus_tag="VLI40_04165"
     CDS             <1..424
                     /locus_tag="VLI40_04165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96398.1"
                     /translation="KPQPVPPIYEPEVAADAIFWAAHHRQREVWVGIPTIAAIVGNKF
                     IPGVLDHYLGRTGYASQQTSQPADPNAPNDLWQPVAGDHGAHGDFDSRAHAFSPEWWA
                     DEHRGLIALGAAGLLGMIAGRRTRRRPADTTDAITEAA"
     gene            424..1854
                     /locus_tag="VLI40_04170"
     CDS             424..1854
                     /locus_tag="VLI40_04170"
                     /inference="COORDINATES: protein motif:HMM:NF013400.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96399.1"
                     /translation="MPSFSCDLTAPTTTLPHVWEHTVGSGHAALALRADWQAQLARCR
                     REIGVRHVRFHGLLSNPMDTLICQDEKWLYSFFNTDRIIDYLLSIGVRPFVELSFMPN
                     ALASGSKTAFHYRANVTPPRDFGEWSNLIGKLARHWIERYGAAEVATWFFGVWNEPNL
                     TVFGSGRQDDYFKLYRSTVTAIKNVDASLKVGGPVTADSEWIDAFVDFCEQNHLAADF
                     ISTHQYPTDSFGKPGDDTETQLSLSTPGFMKSRAQKVRDQAGGRPVYYTEWSTSSNPR
                     DHLHDEPFAAAFSVNILMNVCRIVDAYSYWTFSDIFDENYMPSRPFQGGFGLLSIEGV
                     PKPAYRAFELLRHLGTDELPVVGTHDTARAWSVRRDNRVTVLLTNHALPRHSITTELV
                     HVSLGSAPAPRMAYVERVDDDHANAKRAWREMGEPEYPSRIHIHELEIASLMTKDPIA
                     LSYNDSTIAFDVGLPPHGVAAVTIEF"
     gene            1895..3205
                     /locus_tag="VLI40_04175"
     CDS             1895..3205
                     /locus_tag="VLI40_04175"
                     /inference="COORDINATES: protein motif:HMM:NF021596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HSU96400.1"
                     /translation="MTTAKAPDKLLDKLLDKLQQKTFTYFVNEVNLANGLVRDRTDTA
                     GPSSIAGTGLALAAYPVGVERGYIERDDAIRRTLACMRFFANSTQSTDRSATGYKGFY
                     YHFLDMQTGRRVWDSEISSVDSAFLLAGMLTAAEYFTRDTPEENEIRTLAKQLNERAD
                     WQWMLNGGPTVSHGWTPERGFIRYRWQGYSEALLLYILGLGSPTHPLPEETYTAWTST
                     YKWKKIYGTDYLYSGPLFTHQLSHIWIDFRGIRDPYMQSRQSDYFENSKRATHIQREY
                     GTRNPMNFEGYGEHCWGFTASDGPGWITCSVDGIERRFYGYLSRGAPYGPDDGTIAPW
                     AVVASLPFAPDIVLPAIEQFDRLKLMDPNPYGFKTSFNRTFPTTNAETVGWISAGHCG
                     INQGPIVLMIENYRTELVWNLMRKCQYIVTGLRRAKFAGGWLQG"
     gene            3256..>4634
                     /locus_tag="VLI40_04180"
     CDS             3256..>4634
                     /locus_tag="VLI40_04180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU96401.1"
                     /translation="MSQTPCEPNLADRLRDAAELLESIASDRSLLAGLPEADRTRLLH
                     AAGRVSRPDAVDRRRLVQATKRERRIAKANRAETVLSSTGIRKLRRETVFMTPNVFPP
                     THFEQHDIDDDPDFREAIEPQNCYICKNDFSAIHHFYDQLCPTCAALNFAKRTESADL
                     HGRVALLTGGRVKIGYQAGIKLLRAGAHLIVTTRFPRDSAARYAQEPDFETWSDRLTI
                     YGLDLRHTPSVEAFCSELLRTRDRLDFIINNACQTVRRPPAFYEHMMAGETAALNTLP
                     AKSRKLLGEYEGLRGYHMLPEGDPDTILPAVIGARTSEIAGLTHAAELSQVRLLPEEE
                     AAQRALFPDGRLDQDMQQIDLRERNSWRMLMAEVPSVELLEVQLVNAVAPFIINARLK
                     PLMMRTPERDKHIVNVSAVEGQFYRTFKTTRHPHTNMAKAALNMMTRTAAADYHHDGI
                     HMNAVDTGWV"
BASE COUNT          964 a         1496 c         1343 g          831 t
ORIGIN      
        1 caagccacag ccggtcccgc caatttacga gccggaggtt gcggcggacg caatcttctg
       61 ggcagcgcac caccgccagc gcgaagtgtg ggtcggcata ccaaccatcg ccgcgatcgt
      121 cggcaacaag ttcatacccg gcgtactcga tcactacctc ggccgcaccg gttatgcatc
      181 gcaacagacg tcgcaaccag cagatcccaa cgctcccaac gatctgtggc aacctgtagc
      241 aggcgatcac ggtgcgcacg gcgactttga cagccgcgcg cacgccttct cacccgaatg
      301 gtgggcggac gagcatcgcg gtctcatcgc actcggcgcc gcgggcttgc tcggcatgat
      361 cgccggacgc cggacgcgcc gacgaccggc ggatacaacc gacgcgatca cggaagccgc
      421 gtgatgccaa gcttctcgtg tgacctgacc gcaccaacga ccacgctgcc acacgtctgg
      481 gaacacaccg tgggaagcgg gcacgctgcg ctcgcgttgc gtgcggattg gcaggcgcag
      541 ctcgcacgct gccggcgcga gatcggcgta cggcacgtcc ggttccatgg attgttgtcg
      601 aatccgatgg acacgctcat ctgtcaggat gagaaatggc tctactcgtt cttcaacacc
      661 gatcgcatca tcgactacct cctgtccatc ggcgtgcgac cattcgtcga gctgagtttc
      721 atgccgaatg cgcttgcatc ggggagcaag acggcatttc actaccgcgc caacgtcacg
      781 ccgcccaggg acttcggtga atggtccaac ctgattggaa agctggcgcg tcactggatt
      841 gaacggtatg gcgccgcaga agtcgccacc tggttcttcg gcgtgtggaa tgagccgaac
      901 ctcacggtct tcggcagcgg caggcaggac gactatttca agttgtacag gtcgacggta
      961 actgccatca agaacgtgga cgcatcactc aaggttggcg gccccgtgac cgcggacagc
     1021 gagtggatcg atgcgttcgt cgacttctgc gagcagaacc atctcgctgc ggatttcatc
     1081 agcacgcatc agtaccccac ggactcgttc ggcaagcccg gcgatgacac ggaaacccag
     1141 ttgtcgctct ccacaccggg attcatgaag tcgcgagccc agaaggtgcg cgaccaggct
     1201 ggcgggcgcc ctgtgtatta cacggaatgg agcacgtcat ccaatccgcg cgaccacctt
     1261 cacgacgagc ccttcgccgc cgcgttctcg gtcaacatac tgatgaacgt gtgcaggatc
     1321 gtcgacgcgt acagctactg gacgttctcg gatattttcg atgagaacta catgccgtcg
     1381 cggccgtttc agggcggctt cggattactc agcatcgagg gggtcccgaa gcctgcatac
     1441 cgtgcgttcg agctgctgcg ccacctcggc acggacgaac tgcctgtagt cggaacgcac
     1501 gataccgcgc gcgcatggag cgtgcgacgc gacaacagag tgactgtcct gctcaccaac
     1561 cacgcgttgc cgcgacacag tataactacc gagctcgtgc acgtgtcgct cggtagcgca
     1621 cccgcgccgc gcatggcgta cgtcgagcgc gtcgacgacg atcatgcgaa cgcaaagcgt
     1681 gcgtggcgcg agatgggcga gccggaatac ccgagcagga ttcacattca cgaattggag
     1741 atcgcgtccc tcatgacgaa ggatccgatc gccctcagct acaacgacag cacaatcgca
     1801 ttcgacgtcg gcctgccgcc gcacggagtc gcggctgtca cgatcgagtt ctgacgagcg
     1861 aacacttact gacctgtaac cttcacgtaa cgccatgacc accgcgaagg ctcctgacaa
     1921 gctactcgac aagctactcg acaagctcca gcagaagacg ttcacctact tcgtcaacga
     1981 ggtgaatctc gccaatggcc tcgtgcgcga cagaacagat accgccggcc catcgagtat
     2041 cgcgggtacg ggcctcgccc tcgccgccta tcccgtgggt gtcgagcgcg gatatatcga
     2101 gcgcgacgat gccattcggc gcacacttgc atgtatgcgc ttttttgcga acagcactca
     2161 gagcaccgac cggagtgcaa caggatacaa ggggttctac taccacttcc tcgacatgca
     2221 aactggccgc cgtgtctggg actccgaaat atcgtccgtc gattccgcgt tccttctcgc
     2281 tggcatgttg accgcggcgg aatatttcac gcgcgacact cccgaggaga acgagatccg
     2341 cactctcgca aaacagctca acgagcgcgc ggactggcag tggatgctca atggcggccc
     2401 caccgtttcc cacggatgga cgcccgagcg tggcttcata cgctaccgct ggcagggata
     2461 cagtgaggcg ctcctgctct acatactcgg cctcggctca cctacgcacc cgctgccgga
     2521 agagacctat acggcgtgga cgtcgacgta caagtggaag aagatttacg gaacggatta
     2581 tctgtactcc ggcccgctgt tcacacatca gctgtcacac atctggatcg atttccgtgg
     2641 catccgcgat ccgtacatgc agagcaggca atcggattac ttcgagaaca gcaagcgcgc
     2701 gacccacatc cagcgcgagt atggtacgcg caatccgatg aatttcgaag gctatggcga
     2761 acactgctgg ggattcacgg caagcgatgg acccgggtgg atcacgtgct ctgtcgacgg
     2821 tatcgagagg cgcttctacg gctacctgtc acgcggcgca ccttatggcc ccgatgacgg
     2881 aaccatcgcg ccctgggccg ttgtcgcctc gctcccgttc gcgccggata tcgtattgcc
     2941 ggcgatcgag caattcgatc gactaaagtt gatggatccc aatccctacg gcttcaagac
     3001 ctcgttcaac cgcaccttcc cgaccaccaa cgcagaaacc gtagggtgga tatccgcagg
     3061 tcactgcggt ataaaccagg gcccgatcgt attgatgatc gagaactatc gcacagagct
     3121 tgtctggaat ctgatgcgca agtgccagta catagttacc gggttgcgcc gcgcgaagtt
     3181 cgcgggcggg tggttgcagg gttagcgggt ccggcgatgc agcaggcggt gcgtacgcgc
     3241 cgttaacttt acactgtgtc ccagacccca tgtgaaccca atctcgccga ccgtctccgt
     3301 gacgccgccg agttgctgga atcgatagcc agcgaccgct ccttgctcgc cgggttgccg
     3361 gaagctgaca gaacccggct gctgcacgcc gccggccgcg tttcccgccc cgacgcggtc
     3421 gaccgccgcc gcctggtgca ggccaccaag cgcgagcgca ggatcgcgaa ggcgaatcgc
     3481 gcggagacgg ttctgtccag taccggcatt cgaaagctcc gccgcgaaac ggtgttcatg
     3541 acaccgaacg tctttccgcc gacacacttc gagcaacacg acatcgacga cgatcccgat
     3601 ttccgcgagg caatcgagcc gcagaactgc tacatctgca agaacgactt ctcggcgatt
     3661 caccacttct acgatcaact ctgcccaacc tgcgctgcgt tgaacttcgc gaagcgcacg
     3721 gaatccgccg atctccacgg ccgcgtcgcg ctgctcaccg gcggacgagt caaaatcgga
     3781 tatcaggcag ggatcaagct gctgcgcgcc ggcgcccacc tcatcgtcac gacgcgtttc
     3841 ccccgcgact cggcggcacg ctacgcacag gagccggatt tcgagacgtg gagcgaccgg
     3901 ctcaccatct acggactcga tctgcgccat acgccaagcg tcgaggcgtt ctgctcggaa
     3961 ttgctgcgca cgcgcgaccg cctggatttc ataatcaaca acgcgtgcca gacggtgcgt
     4021 cgcccacctg cgttctacga gcacatgatg gccggagaga ccgcggcgct gaacacgctg
     4081 ccggcgaaat cccgcaagct gctcggagaa tatgagggat tgcgcggata tcacatgctt
     4141 cccgaaggcg atcccgatac catcctgcct gctgtaatcg gtgcgcgcac atccgagatt
     4201 gccggcctga cgcacgctgc cgagctgtcg caggtcagac ttcttcctga ggaggaagcc
     4261 gctcagcggg cgctgttccc tgatggaagg ctggaccagg acatgcagca gatcgatctt
     4321 cgcgagcgca actcgtggcg catgttgatg gccgaggttc cgtcagtcga gctgctcgag
     4381 gtgcagcttg tcaatgccgt cgcgccattc atcatcaacg cgcgactcaa gccgctgatg
     4441 atgcgcacgc ccgagcgcga caagcacatc gtcaacgtct cggcggtgga aggacagttc
     4501 tacagaacct tcaagacgac gcggcatccg cacacgaaca tggcgaaggc cgcgctcaac
     4561 atgatgacac gcaccgctgc tgccgactac catcatgacg gcatccacat gaacgcagtc
     4621 gatacggggt gggt
//
LOCUS       DATIMD010000186         3065 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3242578, whole genome shotgun sequence.
ACCESSION   DATIMD010000186 DATIMD010000000
VERSION     DATIMD010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3065
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3242578"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(115..1728)
                     /locus_tag="VLI40_04185"
     CDS             complement(115..1728)
                     /locus_tag="VLI40_04185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96402.1"
                     /translation="MASALGQKPGTSHRSARAHSQQAPAPVAGPRVVAAVLPVDGLET
                     DSVQTIISRDLNFGDRVQVVSDLASAPPAIPPAKVRGAKTTQSPPVVVKAVATAAGLT
                     VSLIDPLSGTIRQQNDFVLPQVSHRTDKAVADSLNQAFDARDLLRRARIVRAEAVRDS
                     LQYEMTKKPPRLRNKEAKQQYAALVVQRNNMLVDELGELALVHGERERDEAARAGIQA
                     DAIAREAVIRDSATAARRWAIHGVSDAVEEWLTGHRGIAQSRIAYVSNGVIRVVDFDG
                     ANDHPVTRIDKDGDKAMSPAWRRDGTAIVYSEMDDAGTQIAMVNLVTGTTRALAATPR
                     GLNITPIFSADDKSVIYANGSDFHTSLVSVRLDSATAVRPLPLNRSFDVGEPILSPDG
                     TRIAYVSSRPKTPQIYSSNLDGTDERVEAPAPPKTRVYHTSPDWSPDGRMIAYQQQNG
                     DFQVWLVNRDSHNVRRLTSIGENEDPSWAPDARHIALTSNRGGSKAIWVLDIQTGRFR
                     QLTAAGDARLAAWSGQLGSRPPGPLVAAR"
     gene            complement(1985..>3065)
                     /locus_tag="VLI40_04190"
     CDS             complement(1985..>3065)
                     /locus_tag="VLI40_04190"
                     /inference="COORDINATES: protein motif:HMM:NF014713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HSU96403.1"
                     /translation="IFLGLALNLLGFYQLNVSSRVLSGIDAATRGKGESDAVSTLLMG
                     VLFTLTSFTCTAPFIGTLLVAASQGEWQRPIVGMLVYAVVFALPFIVLATIPRWINSL
                     PSSGAWLNRIKVVMGFVELAAVAKFISNADLVWHWNVFTHDVVLAIWVVLALITTFYL
                     LGAFRLPHEPPLERPAAGRTSERALPHIGASQAVPALVFLALGMWLATGLTGGTLGTL
                     ESFLPPVGGAPAAVDAADVPAELNWRLNDLPAALAVAQQEHRRVFIDFTGYTCTNCRW
                     MESNMFTRPEVKVAMNRFVLARLYTDGDGDIYDKQQAMQQQRFGTIALPLYAIVDPDG
                     KTITTFAGLTRSPNDFLSFLSAGLN"
BASE COUNT          648 a          873 c          970 g          574 t
ORIGIN      
        1 gatcgtaagt cgttggatgt aaacgactta cgatctggcc cgccgacttg tgaaacgaaa
       61 tggctgtaac gtagcgttac aggtgcaacg cttcagcgca tgataaacat tcgattatcg
      121 ggctgcgacc aggggtcctg gcggcctgga tccgagctgg ccagaccatg cagccagtcg
      181 tgcatcgccg gcggcagtga gctgccggaa gcggccggtc tggatatcga gaacccagat
      241 tgccttggag ccgccgcggt tggaggtcag cgcgatgtgg cgcgcgtcgg gcgcccacga
      301 cgggtcctcg ttctcgccga tcgaggtgag gcggcggacg ttgtggctat cccggttcac
      361 cagccagacc tggaaatcgc cgttctgctg ctggtacgcg atcatccgtc cgtcgggact
      421 ccagtcgggg ctggtgtgat agacacgtgt ctttggcggc gccggtgctt caacccgctc
      481 gtcggtgcca tcgaggttgg aagagtatat ctggggggtc ttggggcggg aggagacgta
      541 cgcgatgcgt gtaccgtccg ggctcagaat cggctcgccc acatcgaagg agcggttgag
      601 tggcagaggc cggacggcgg tggcggagtc caaccgtact gagacaaggc tcgtatggaa
      661 gtccgagccg ttcgcataga tgaccgactt gtcatccgca gagaagatcg gggtgatgtt
      721 gagaccacgt ggtgttgctg ccaatgcgcg agtcgttccg gtgacgagat tgaccatggc
      781 gatctgggtg cctgcatcgt ccatctcgct gtaaacgatg gcggtgccat cccggcgcca
      841 cgcgggcgac atcgccttgt cgccatcctt gtcgatgcgc gttacgggat gatcgttggc
      901 gccgtcgaaa tcgacgacac gaatcacgcc gttcgataca tacgcgatac gtgactgcgc
      961 gatgccgcga tgtccggtga gccattcctc aactgcatcg gagacaccgt ggattgccca
     1021 gcggcgcgct gcagtcgctg aatcgcgaat cactgcttcg cgcgcaattg catcagcctg
     1081 aatgccggca cgcgcggctt catcacgctc acgctcaccg tgcaccagtg ccagctcacc
     1141 caactcgtca acgagcatgt tgttgcgctg gacgacgagc gcggcgtact gctgcttcgc
     1201 ctccttgttg cgcaacctgg gcggtttttt ggtcatctcg tactggagcg agtcacgaac
     1261 cgcttctgcg cgaacgatac gtgcacgacg caggagatcg cgcgcatcga aggcctggtt
     1321 cagtgaatcg gcaaccgcct tgtcggtccg atgcgacacc tgcggaagta caaagtcatt
     1381 ctgctgcctg atggtaccgc tcagtgggtc gatgagcgaa accgtcagtc cggccgcagt
     1441 ggcaactgcc ttgacaacta caggcggcga ttgcgtcgtt ttggcgccac gaaccttagc
     1501 gggtggaatc gcgggcggag ccgaggcgag atcagacacg acctgcacac gatcaccgaa
     1561 attcaggtcg cgtgaaatga tagtctgtac cgagtcggtc tcgagtccat cgacaggaag
     1621 cacggcagcg acgactctcg ggccagctac aggtgccggc gcttgttgcg agtgcgctcg
     1681 tgcagaacga tgcgaagtac cgggtttctg accgagcgcg gaagccactg gcaacaacac
     1741 gagcccaatg cacagcgagc gatgtgacaa catggtcgag cctccataag gtgcgccgca
     1801 gggacgtatc ggatccggtc gattcaaaac aggtgataaa ccgccggtgc atgcgtcgca
     1861 ctaggacgag cagcttacgc gttggtaatg ggtgatttgt cgcgtgtcag gaaatactac
     1921 agaaatacta catttgactg cacgcactgt acgattcgta cagtcaaatc gacagaaaaa
     1981 aacgctagtt cagtccggcg gacaggaacg aaagaaaatc atttggactg cgtgtgagtc
     2041 cggcgaacgt cgtgatggtt ttgccatcgg gatcaactat cgcgtagagc ggcagagcta
     2101 tggttccaaa gcgctgctgt tgcatggcct gctgcttgtc gtagatgtcg ccgtcgccgt
     2161 cggtgtagag acgcgccaga acgaaccggt tcatcgcgac cttcacttcc ggacgggtga
     2221 acatgttgga ttccatccaa cgacagttgg tgcacgtgta tccggtgaaa tcgatgaaca
     2281 cacgccgatg ctcctgttgc gcgacagcga gcgccgcagg gagatcattc agacgccagt
     2341 tgagctcggc tggaacgtcg gcggcgtcga ctgcagcggg cgcaccacca acgggtggaa
     2401 gaaaggattc aagcgtaccg agagttccac ctgtgagtcc ggtggcaagc cacattccga
     2461 gcgcgagaaa aaccagcgcc ggaactgcct gtgatgcgcc gatgtgcggc agcgcgcgtt
     2521 ccgatgtacg gcccgccgca ggacgctcca gcggcggctc gtgcggaaga cgaaacgcgc
     2581 ccagaagata gaacgtagtg atcagcgcga gcacgaccca gatcgcgagc acgacatcgt
     2641 gcgtgaagac gttccagtgc cacaccagat cagcgttgga tatgaatttc gcgaccgcgg
     2701 cgagttcgac aaaacccatc acgaccttga tgcggttcaa ccaggcccct gagctgggca
     2761 gactgttgat ccagcgcggg atcgtcgcga gaacgatgaa cggcagcgcg aacacgacgg
     2821 cgtacacgag cattccaacg atcgggcgct gccattcgcc ctgcgacgcc gcaaccagca
     2881 acgttccaat gaatggtgcc gtgcacgtga agctcgtgag cgtgaagagc acgcccatga
     2941 gcagcgtgct cacggcgtcg gattcgccct ttccgcgcgt ggccgcatcg atgccgctca
     3001 gcactcggct tgaaacattc aactgataga agcccagcag attgagcgcg aggccgagaa
     3061 agatc
//
LOCUS       DATIMD010000187         5600 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4396788, whole genome shotgun sequence.
ACCESSION   DATIMD010000187 DATIMD010000000
VERSION     DATIMD010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5600
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4396788"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..745
                     /locus_tag="VLI40_04195"
     CDS             <1..745
                     /locus_tag="VLI40_04195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96404.1"
                     /translation="LFQGDTQSDTAKFKPFREGINASFTLNGQTGIIGAISRLFGHAP
                     PSATQPTQTVEQSEQDQLASRLSSMPVAGSYRRDMQYAIDDTQGWTSQITFASTRQRP
                     PVGGRVINFDPTLVCAPYSSNPILFAQCRQTALLNPQTTVNNTSDPIGGGVFVRVPPR
                     ETLNANTTFHITQKWSASWGTLYDVVNHAFASNQVTLQRDLHDWRAIFSFSQSPNGNS
                     YFSFMIGNKAQPDLKFNYDKPTYRQQDIR"
     gene            752..1744
                     /locus_tag="VLI40_04200"
     CDS             752..1744
                     /locus_tag="VLI40_04200"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HSU96405.1"
                     /translation="MSARFAPWDVPIFLAKYAYLTLVRKPILVHFEVTLRCNAHCGFC
                     DYWKTDSSERDNELRSFADAARFFNPMMITWTGGEPTLRRDLEDLVSAVDRAIRVKYM
                     TLITHGGMLTPERAQSLWDAGVNQFNISLDFLDERHDDARGIPGLVGKIMHNVPAMRE
                     RGIDAIRFNTVIKRSNIGELVAIVRRAAELGVGVNFSCYTDSKNGNAEGLIPASEMRH
                     LEEVIAELLAFKRERRGIITNSDYYLEQIPRYFRGETSEPCRSGIRTIHIDPAGYVKR
                     CPDFPVDFHWRDFRKYEPVNCNACYYACRGEAQAPLRLSRIRDVMASPLDHKNT"
     gene            1797..3608
                     /locus_tag="VLI40_04205"
     CDS             1797..3608
                     /locus_tag="VLI40_04205"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSU96406.1"
                     /translation="MSKSAQLKRKAAEFEQKRQYDRALTSYAQAIEAAAGIPDELDIP
                     LYNRVGDLHLRMGELDKAVGYYETAVDLYAEGGFFNNAIALCNKVLRHAPDRSVIYYK
                     LGKISAKKGFNSDAKQNFLEYAARMEKGGDISEAFRALKEFADLCPGQDDVRLMLAEQ
                     LARAGRTQEALEQLQIVHEAMLSEDRGAEAAATLERIRTLDPHFAPQIGMSRQEAKRE
                     GLVFLDVDYGKRGEKQQGTPDDTASRPLSAQGFDDVELPPPADTRAERTLDESPLAGL
                     TPLEDPLTSMISEQSRGPGPIIDEFESTSLPDGEQRPEILPLDIEYTSYDTQSRTPDV
                     DEPQWPAQADLATSEPEEPPPALNEPGDSMADALTGYVESLSSDVGEMEGGLPDDLAI
                     LPVEAVQEEQAPAQSPAQSPAQSPAQRPARTDDEFVDLNEWLLEDEAPRNPRMTADEE
                     DKPAGEVQTDFSEMLETFKAGVAANVDESDSDSHYDLGVAYMEMGLFDEAIAQFQKAM
                     RGDASPERRVRAYESLGQSFIEQNQYEVAISSLSGALKESGLNDTKLVGVLYLLGYAS
                     EKLAHWQDAERYYRRVFAVDIHFRDVGERLKRAEQMA"
     gene            3605..4624
                     /locus_tag="VLI40_04210"
     CDS             3605..4624
                     /locus_tag="VLI40_04210"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HSU96407.1"
                     /translation="MTAWSIDAPEASDALRAVTLDEVQAPVRDDLEQVRDEMEQAITR
                     DIPMLAIAARHLLAMKGKMFRPTLVLLASHTAGTPTRDAVVVASVVEMVHLATLVHDD
                     AVDHSMLRRGMPTINSLFSDQISVIMGDFLYSTALTQLVALDNMAAIRALVDASTQMS
                     VGELSQLSTIEPLSFSEDDYEFLIRSKTASLISAACRVGAMCGAHAHVEALAEYGDAL
                     GMVFQITDDLIDYTEASETTGKPSGLDLREHKVTLPLIAALRSMSAAERGRVNAVFQV
                     TDPAEDDVADVARIVVERGGLEYTRQRAAEYAERARAALLGLPATPARDALGAAIFYV
                     MERHA"
     gene            4624..4905
                     /locus_tag="VLI40_04215"
     CDS             4624..4905
                     /locus_tag="VLI40_04215"
                     /inference="COORDINATES: protein motif:HMM:NF025572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4321 domain-containing protein"
                     /protein_id="HSU96408.1"
                     /translation="MPPRGAARKGAFFYGMVLATGFIAGGLLTQVSRRFLPPSAVKEF
                     FTTGVTPSFGPLTVDLVILKFAIGPVAVDVSLLSLLGVLLAYLIARSLF"
     gene            4965..5228
                     /locus_tag="VLI40_04220"
     CDS             4965..5228
                     /locus_tag="VLI40_04220"
                     /inference="COORDINATES: protein motif:HMM:TIGR01411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HSU96409.1"
                     /translation="MPHFSFMELVIIMVVILLLFGAKRIPEIAGSVGKGIKEFKKEMN
                     DMERNVTNRDVGSPPRLTSDDLQRPSTTQTTEPEQQREPRRLI"
     gene            complement(5322..>5600)
                     /locus_tag="VLI40_04225"
     CDS             complement(5322..>5600)
                     /locus_tag="VLI40_04225"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSU96410.1"
                     /translation="NASRIVGAAFALPVGTVSEPIVTDNAVFVIEVNRRVDADRKTFD
                     AAKEQLRGQYLNSMQQARIQEFVANLKSAAKITDRRKEVEASMRRTSS"
BASE COUNT         1126 a         1758 c         1681 g         1035 t
ORIGIN      
        1 gctattccag ggtgacacgc agagcgatac ggcgaagttc aagccattcc gcgagggaat
       61 caacgcgtcg ttcacactca atggacagac gggaatcatc ggcgcgataa gccgcttgtt
      121 cgggcacgcc ccaccgtcgg ctacgcagcc gactcagacg gttgagcaga gcgagcagga
      181 tcagctcgca tcgcgactct catccatgcc cgttgccggc agctacagac gcgacatgca
      241 gtatgcgatc gacgacaccc agggttggac gagccagatc actttcgctt ccacgcgcca
      301 gcggccgccg gtcggcgggc gtgtaatcaa cttcgatccg acgctggtgt gcgcgccgta
      361 ctcgtccaat ccgattctgt tcgctcagtg ccggcagacc gcgctgctca atccacagac
      421 cacggtcaac aataccagcg acccgatcgg tggcggagtg ttcgtgcgcg ttccgccgcg
      481 cgagactctg aacgcgaaca ccaccttcca catcacacag aagtggtcgg ccagctgggg
      541 cacgctgtac gacgtcgtca atcacgcgtt cgcgagcaat caggttacgc tgcagcgcga
      601 cctccacgac tggcgcgcga tcttctcgtt cagccagagt cccaatggca actcgtattt
      661 cagcttcatg attggcaaca aggcccagcc ggacctcaag ttcaactacg acaagcccac
      721 ctaccggcag caggacattc gttaaccgtt gttgtcagct cgcttcgcgc cgtgggatgt
      781 accgatcttc ctggccaaat acgcctacct cacgctggtt cggaagccga tcctcgtcca
      841 cttcgaggtg acactccgct gcaacgccca ctgcggattc tgcgactact ggaaaaccga
      901 ttcatcggag cgcgacaacg agctcaggag cttcgccgac gccgcgcgct tcttcaatcc
      961 gatgatgatc acatggacgg gtggcgagcc tacgctgcga cgtgatctag aagacctcgt
     1021 gtcagccgtc gatcgcgcga tccgtgtcaa gtacatgacg ctcatcacgc acggtggaat
     1081 gctcacaccg gaacgcgcgc aatccctgtg ggatgccgga gtgaatcagt tcaacatctc
     1141 gctcgatttt ctggatgagc ggcacgatga cgcgcgcgga attccgggtc tcgtcggaaa
     1201 gatcatgcac aatgtgcccg cgatgcgtga gcgcggaatc gatgcgattc gattcaacac
     1261 cgtcatcaag cggtccaaca tcggcgagct cgttgccatc gtgcggcgcg cggccgagct
     1321 gggtgtcggt gtcaacttca gctgttacac cgacagcaag aacggcaacg ccgagggact
     1381 gatcccggcc tcggaaatga ggcatctcga ggaggtcatc gccgagctcc tcgcgttcaa
     1441 gcgcgaacgc cgcggaatca tcaccaattc ggactactac ctggagcaga ttccaaggta
     1501 tttccgcggg gaaacgtccg agccctgcag gtcgggcatc cggacgatcc atatcgaccc
     1561 tgcaggctac gtgaagcgct gcccggattt ccccgtcgac tttcactggc gtgacttccg
     1621 gaagtatgaa ccagtcaact gcaatgcatg ctactacgcg tgtcgcggtg aggcccaggc
     1681 gccattgcgc ctctcccgga ttcgcgatgt catggcatct ccgctcgatc acaagaacac
     1741 ttaaaggacc ggtcattctg gccgacctcc ggcgccctcg ttaacttccc cttgaaatgt
     1801 ccaagtccgc ccagctcaag aggaaagctg ctgaattcga gcagaaacgt cagtacgatc
     1861 gtgccctcac gtcctacgcc caggccatag aggctgccgc cggaattccg gacgaactgg
     1921 acatcccgct ctacaatcgc gtcggcgacc ttcacctgcg catgggcgag ctggacaagg
     1981 cggtcggcta ctacgagacc gcggtcgatc tgtacgccga aggcggcttc ttcaacaacg
     2041 ccatcgccct gtgcaacaag gtgctccgtc atgcacctga ccgctcggtc atctactaca
     2101 agctcgggaa gatcagcgcg aaaaagggct tcaattccga cgcgaagcag aacttcctgg
     2161 agtacgccgc ccggatggag aagggcggtg acataagcga ggccttccgg gcgctcaagg
     2221 aatttgccga cctctgtccc ggccaggacg acgtccgcct catgctggcg gagcaactgg
     2281 cgcgcgcagg ccgcacgcag gaggcgctcg agcagctcca gatcgtccat gaggcgatgc
     2341 tttccgagga tcgcggcgct gaagcggctg cgacgctgga gcgcatccgt acgctcgacc
     2401 cgcattttgc gccgcagatc ggcatgtcgc gccaggaagc caagcgcgaa ggactggtct
     2461 tcctggacgt cgattacggc aagcgtggcg agaagcagca ggggactccc gacgatactg
     2521 cgtcccggcc actatccgcc caggggttcg atgacgtcga gctgccaccg ccggctgata
     2581 cccgtgccga acgaacgctc gacgaatcgc cgctcgcggg tctgacaccc ctcgaagacc
     2641 cgctgacttc gatgatctcc gagcagtcgc gcgggcccgg gccgatcatc gacgagttcg
     2701 agtcgacgtc gttgccagac ggcgaacagc gtccggagat cctgccgctg gacatcgaat
     2761 acacgtccta cgacacacag tcacgcactc cggatgtcga tgagccgcag tggcccgcgc
     2821 aggccgacct ggcgacgtcc gagcccgaag aaccgccacc ggcgctgaac gagcctggcg
     2881 attcaatggc cgatgcgctg accgggtacg tcgagtcgct ctcgagcgac gtcggcgaga
     2941 tggagggcgg attacccgat gacctcgcca ttctccctgt agaggccgtg caggaggagc
     3001 aggcaccagc gcagagccca gcgcagagcc cagcgcagag cccagcgcag cgccctgcgc
     3061 gtaccgatga cgagttcgtc gatctcaacg agtggcttct cgaggacgag gcgcccagga
     3121 acccgcgcat gaccgcggac gaggaagaca agccagcggg cgaagtgcag accgatttct
     3181 ccgagatgct ggagacgttc aaggccggtg tcgcagccaa tgtcgacgag agcgactccg
     3241 acagtcacta cgatctcggt gtcgcgtaca tggagatggg acttttcgac gaggcgatcg
     3301 cgcagttcca gaaggcgatg cgcggcgacg cgtctccgga gcgtcgcgtc cgcgcctacg
     3361 agtcgctcgg ccagagtttc atcgagcaga atcagtatga ggttgcgatc agctcgctca
     3421 gcggcgcact caaggaatca gggctcaacg ataccaagct cgtcggagtg ttgtatctgc
     3481 ttggatacgc aagcgaaaag ctggcgcact ggcaggatgc cgagcgctat taccgccgcg
     3541 ttttcgcggt ggacattcac tttcgcgacg tcggtgagcg attgaaacgc gccgagcaga
     3601 tggcgtgacg gcgtggtcca tcgacgcgcc agaggcgagt gacgctctgc gcgccgtgac
     3661 gctcgacgag gtgcaggccc ctgtacgtga tgacctggag caggttcgcg acgagatgga
     3721 gcaggcgatc acgcgcgaca ttccgatgct cgctattgcc gcccggcatc ttctcgcgat
     3781 gaaggggaag atgttccgcc cgacactggt actgttggcc agtcacaccg cgggaactcc
     3841 gactcgcgac gcggtagtcg tagcgtccgt cgtcgagatg gtgcatctcg ctacactggt
     3901 gcacgacgac gccgtcgatc attccatgct gcgccgcggc atgccgacca tcaactcgtt
     3961 gttcagcgat cagatctcgg tgatcatggg cgactttctg tactcgactg cactcacgca
     4021 gctcgtcgcg ctcgacaaca tggcggcgat acgcgcgctg gtcgatgcat cgacgcagat
     4081 gtcggttggc gagctgtcgc agctctcgac catcgagccg ctcagttttt ccgaagacga
     4141 ctacgagttc ctgattcgat ccaagaccgc gtcgttgatc tctgccgcat gccgcgtcgg
     4201 cgcgatgtgc ggtgctcacg cgcacgtcga agctcttgcc gaatacggcg acgcgctcgg
     4261 aatggtgttt cagatcaccg atgatctgat cgactacacg gaagcatccg agacgacggg
     4321 caagcccagc ggactcgatc tgcgggagca caaggtgacc ctgccgttga tcgccgccct
     4381 ccgatcgatg tccgccgcgg agcgaggtcg ggtcaacgct gtattccagg taaccgatcc
     4441 cgccgaggat gacgtcgccg acgtggcgcg catcgtcgtg gagcgagggg gtctggaata
     4501 cacacgtcaa cgagccgccg agtacgctga aagggcgcga gccgcgctac tcggtcttcc
     4561 tgcaacgccc gcccgtgacg ccctcggcgc ggctatcttc tacgtaatgg agcgacacgc
     4621 ctgatgccac cgcgcggagc ggcccgaaag ggcgcattct tctacggaat ggtcctggca
     4681 acgggattca tagcgggcgg tctgctgacg caggtctccc gccggttcct gccgcccagt
     4741 gcggtcaagg aattcttcac gaccggggtg accccgtcat tcggcccgct caccgtcgac
     4801 ctggtgatcc tcaagttcgc tatcggaccg gtggccgtcg atgtgtcact tttgagcctg
     4861 ttgggtgtac ttctggcata tttgattgca cgctcgttat tttagagcgg ctatattgct
     4921 aggcgtaggc agcgaacttt tttccccgtc agggagttat ggaaatgccg catttcagct
     4981 tcatggaact ggtcatcatc atggtggtga tcctgcttct attcggcgcc aaacgcattc
     5041 ctgagattgc aggctccgtg ggcaagggaa tcaaggagtt caagaaggag atgaacgaca
     5101 tggagcggaa cgtgacgaac cgcgacgtcg gctctccacc gcgcctcaca tcggacgatc
     5161 tgcagcgtcc gtccacgacg cagacaaccg agccggaaca gcagcgtgaa ccgcgcagac
     5221 tgatctagct ggcgttaaga aaccagaaag attaaaagag gggatgagcg acaagtcgct
     5281 catcccctct tttcgtttgt gcaggtcccg tcatcccgtc atcatgacga cgtccggcgc
     5341 atcgaggcct cgacttcctt gcggcggtcg gtgatcttcg cggccgactt gagattcgcc
     5401 acgaattcct gaatccgggc ctgctgcatc gagttcagat actggccgcg cagctgttcc
     5461 ttggccgcat cgaacgtctt gcgatcggcg tcgactctcc ggttcacctc gatcacgaac
     5521 accgcattgt cggtgacaat cggctcgctg acggtaccaa cggggagcgc gaatgccgcg
     5581 ccgactattc tcgacgcgtt
//
LOCUS       DATIMD010000188         4974 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2665057, whole genome shotgun sequence.
ACCESSION   DATIMD010000188 DATIMD010000000
VERSION     DATIMD010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4974
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2665057"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1084)
                     /locus_tag="VLI40_04230"
     CDS             complement(<1..1084)
                     /locus_tag="VLI40_04230"
                     /inference="COORDINATES: protein motif:HMM:NF013691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HSU96411.1"
                     /translation="MAKKSRAYTFKEPTSDEQLAAMRAVVRESARNEPGVYRMIAENG
                     EIVYVGKSKQIRSRLMSYFRASYPEDKGARILRDATRIEWDYEPSEFAALLRELRLIK
                     QYRPRFNVAMKRDARHYSFIKISRGAAPKLNVVRGAGPDDAAIYYGPFVGAQRVSEAV
                     RELNDVLGLRDCRSDMPIFFSDQRELFQLGRTPGCIRHEIRKCLGPCVGGCTVAEYDH
                     QLALARAFLDGSDAGPADTLRHQMEAASNALEFERAAIFRDKLSRLEALREQFDRLRF
                     AVESLSFVYNVQGCDGRDRTYVIRRGIVRAELDSPKTRRDKAAMRRLVDDIFGEKPTA
                     GSSIPTHEIDELLLLSSWFRKFPEEMQ"
     gene            complement(1099..1929)
                     /gene="mutM"
                     /locus_tag="VLI40_04235"
     CDS             complement(1099..1929)
                     /gene="mutM"
                     /locus_tag="VLI40_04235"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: protein motif:HMM:NF002211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HSU96412.1"
                     /translation="MPELPEVETIARGVNAAVAGRTIEAVGLPRPDVLREATARNFAR
                     RVRGTRITGAKRRAKHIVISLDSGDSLVVQPRFTGALLATRGSELTDYDRTYIAVLLG
                     LDSGFVLAYRDVRRLGTVSLMDSARLEEYFGELGEEPLEEGFTAERLSAILRASRQPV
                     KKVIMDQYRIVGVGNIYANEALWRAGIDPSRMASRVTPEEAAELRDAIVSVLQEAIVA
                     GGSSIRDYRNANGEAGEFAQSLSAYGRAGEPCHRCGARLVGTHAIDGRQTVLCAHCQH
                     "
     gene            complement(1922..3250)
                     /gene="purD"
                     /locus_tag="VLI40_04240"
     CDS             complement(1922..3250)
                     /gene="purD"
                     /locus_tag="VLI40_04240"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HSU96413.1"
                     /translation="MKVLIVGGGAREHAIAWKLLQDDPTLDLIAAPGNPGIATLARCV
                     AIPADDITALLALARAERPDLTVVGPEAPLDAGIADAFHAEGLPIFGPTRAAARIETS
                     KRFAKELMLRAGVPTARASHHTSVETALRAAHAIGAPVVIKASGLAAGKGVVIAETMA
                     EAERAIRDMLDAGAFGEAGREILVEEFMTGEEISVFAICDGQHSRLMIGAQDHKRLED
                     GDMGPNTGGMGAYAPVSLDTASLQALVKVTIIDRMLAALREDHSSFSGLLYAGLMLTA
                     TGVKVVEFNCRFGDPETQALLPLMASSLLQPMLTVARGESLVDTPELEWNAGSSVTTV
                     LAAAGYPGRVRKGDAIAFPEPEDGVYIFHAGTRVADTANARNVDEPPVVTDGGRVLSV
                     TAVAPTLRAATERSRRYAERIRFAGKQMRRDIAWRELAREAQRSSGEANA"
     gene            complement(3247..4248)
                     /locus_tag="VLI40_04245"
     CDS             complement(3247..4248)
                     /locus_tag="VLI40_04245"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HSU96414.1"
                     /translation="MTGELPVPAPSRRRTLTGIAPVAWEHPADRAALQTLRAIPGLDE
                     LVRRVMSFLGERGVRQLFTADSVRVNERQRPKLHSLYMEVLETLDWPVRPDLFVTQTP
                     FVNAMAVGFEKPFIVVHTGALGILDEPQQRVLLGHEVGHVMSGHSTYSTLALLFLSFG
                     FNAIPGLGLIALPIQLALLEWYRKAEFSADRAGLLASQDPIQTMRMFLLFAGGTGDAS
                     ETNLDEFLAQAQEYESDSGAIDLLFKLLNVSGRTHPFNTVRAAELQRWVQAGGYDAII
                     NGEYARRGAPNERPLTDDYADAAGYYGEKMKGMMNQMADAARRATDTMNNVFRNEDE"
     gene            complement(4245..>4974)
                     /locus_tag="VLI40_04250"
     CDS             complement(4245..>4974)
                     /locus_tag="VLI40_04250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HSU96415.1"
                     /translation="AAIIIETPTNPLMRLTDIQAAADIAHSHNALLVVDNTFASPYLQ
                     QPFTLGADIVWHSSTKYLNGHSDMIGGIALVDNDELATRMQFILNASGAVPGPMDAWL
                     VLRGTKTLHLRMARHDSNGREIAAWLAKRMGEQNVFYPGLESHPQHALALKQMKGFGG
                     MISVETGSREAAARMLGRVHVFSLAESLGGVESLINHPAEMTHASVEPARRAQLGITE
                     GLVRLSCGVEDVGDLIADLDQALR"
BASE COUNT          879 a         1606 c         1537 g          952 t
ORIGIN      
        1 gttgcatttc ttcaggaaat ttcctgaacc agctcgacag cagcagcagc tcgtctatct
       61 catgagtcgg gatggacgag ccagctgtcg gcttctcgcc gaagatgtcg tccaccagcc
      121 ggcgcatcgc ggccttgtcg cggcgcgttt ttgggctgtc gagctcagcg cgcacgatgc
      181 cgcgccgaat gacgtacgtc cggtcgcggc cgtcgcaacc ctgcacattg taaacgaaag
      241 acagcgactc cacggcgaag cgtagccggt cgaactgttc gcgcagtgct tcgagccgtg
      301 agagtttatc gcggaagatc gcggcgcgct cgaattccag cgcgttgctc gcggcctcca
      361 tctgatgacg gagtgtgtca gccggtcccg catcggatcc gtcgaggaac gcgcgtgcaa
      421 gcgcaagctg gtggtcgtac tcggcgaccg tgcacccgcc gacgcacggc ccgagacact
      481 tccggatctc gtgtcggatg cagccaggcg tacgaccgag ctggaacagc tcgcgctgat
      541 cagagaagaa gatcggcatg tcgctccggc aatcgcgaag acccagcacg tcgttcagct
      601 cgcgtacagc ctcgctcacg cgctgcgccc ctacgaacgg gccgtaatag atcgcggcat
      661 cgtcggggcc ggctccgcga acgacgttga gctttggagc cgcgccgcgc gatatcttga
      721 tgaaggaata atgcctggcg tcacgcttca tcgcgacgtt gaatcgcggt ctgtactgct
      781 tgatcagtcg caactcacgc agcagcgcgg cgaactcgct tggctcgtag tcccattcga
      841 tccgggttgc gtcgcgcaga atgcgcgcgc ccttgtcttc cggatacgac gcacggaagt
      901 agctcatcag acgggagcga atctgtttgg acttccccac gtacactatc tcgccgttct
      961 cggcgatcat gcgatagacg cccggttcgt tgcgtgccga ctcgcgcact accgcgcgca
     1021 tggccgcgag ctgctcgtcg ctcgtcggct ccttgaaggt gtaggcacgt gactttttcg
     1081 ccatctggat gggtatcgtc agtgctggca gtgcgcgcag agaacagtct gacggccgtc
     1141 gatcgcgtgc gtgccgacga gtcttgcgcc gcagcggtga cacggctcac ccgcgcgacc
     1201 gtacgctgag agagactgtg cgaactcgcc ggcctcgcca ttggcgttgc gatagtcgcg
     1261 gatactcgag ccgcccgcca cgatcgcctc ctgcaatacc gacactatcg cgtcgcgaag
     1321 ctcggcggcc tcttcgggcg tgactctgga cgccatgcgt gacgggtcga taccggcacg
     1381 ccagagcgct tcgttggcgt agatgttacc gactcccacg attctgtact gatccatgat
     1441 gaccttcttg accggctgcc gagacgcccg aagaatagcc gaaagacgct ctgccgtaaa
     1501 tccctcctcc agcggctcct cgcccaattc gccgaaatac tcttccagcc gcgcggagtc
     1561 catcaacgag acggttccga gtcgtctgac gtcgcggtag gcgagcacga aaccggagtc
     1621 gaggcccagc aatacggcga tgtacgttcg atcgtagtcg gtgagctcgc tgcctctcgt
     1681 ggccagcaac gcgccggtga atcgtggctg caccaccagt gaatcgccgc tatcgagcga
     1741 aatgacaatg tgtttcgctc gtctcttcgc accggtgata cgggtgccgc gcacgcgcct
     1801 ggcgaagttg cgcgcggtag cctcgcgcaa cacgtccggc cgcggcagtc caacggcttc
     1861 gatcgtgcgg ccggcgaccg cggcgttcac gccgcgcgcg atcgtctcga cctccggcag
     1921 ctcaggcatt ggcctcaccg ctggaccgct gcgcctctcg cgcgagctct cgccatgcaa
     1981 tgtcgcgccg catctgcttg ccggcgaacc gaatccgctc cgcgtagcgt cggctgcgct
     2041 ctgtggcggc gcgcagcgtc ggtgccactg ctgtaaccga caatacgcgt ccgccgtcag
     2101 tgacgaccgg cggctcgtcg acatttcgtg cattcgctgt gtctgcgact cgcgtccccg
     2161 cgtgaaatat gtacactccg tcttcaggct ccggaaatgc gattgcatcg cccttcctca
     2221 ccctgccggg atagcctgca gctgcgagaa cggtagtgac gctggaaccg gcgttccatt
     2281 ccagctccgg cgtgtcgacc agtgactcgc cgcgcgcgac ggtgagcatc ggctgcaata
     2341 gcgagctcgc catgagcggc aacaacgcct gcgtttcagg atcgccgaaa cgacagttga
     2401 actccacgac cttcaccccg gttgccgtga gcatcagtcc ggcgtacaac agtccggaaa
     2461 atgacgagtg gtcttcgcgg agcgcggcga gcatccggtc gatgatggtc accttgacga
     2521 gtgcctgaag actcgcggta tccagcgaaa caggtgcata cgcacccatt ccgccggtgt
     2581 tcgggcccat gtcaccgtct tcaaggcgct tgtgatcctg cgctccgatc atcagtcgtg
     2641 aatgctggcc atcacaaatg gcgaagacgg agatctcttc accagtcatg aactcctcga
     2701 cgagaatttc ccttccagcc tcgccgaacg ctcccgcatc cagcatgtcc ctgatcgcgc
     2761 gctcggcttc ggccatcgtc tcggcgatga cgacaccttt gcccgcggcg agtccggacg
     2821 ccttgatcac taccggtgcg ccgatcgcgt gtgcggcgcg cagcgcggtc tcgaccgatg
     2881 tgtggtggct cgcgcgcgcc gtcggaactc ccgcgcgcag catcagctcc ttcgcgaatc
     2941 gcttggacgt ttcgatgcga gccgctgcgc gtgtcggtcc gaagattggc agcccttcag
     3001 catgaaacgc atccgcgatt ccggcgtcga gcggcgcttc gggacccacg acggtaagat
     3061 ccggacgctc cgcgcgcgcg agggccagga gcgctgtgat gtcgtccgcc ggaatcgcga
     3121 cgcatcgcgc aagcgtcgca atcccgggat tcccgggtgc tgcaatcagg tcgagcgtcg
     3181 gatcatcctg taacagcttc catgcgatcg cgtgttctcg cgcgccaccg ccaactatca
     3241 gaaccttcac tcgtcctcgt tgcggaacac attgttcatc gtatcggtcg cacgtcgcgc
     3301 cgcgtcggcc atctggttca tcattccctt cattttctcg ccgtagtagc cggcggcgtc
     3361 ggcgtagtca tccgtgagtg ggcgctcgtt cggcgcaccg cgtcgcgcgt actcgccgtt
     3421 gattatcgcg tcgtaaccgc cagcttgcac ccagcgctga agttcggcgg cgcgcaccgt
     3481 attgaacggg tgggtgcgac cggaaacatt gagcagcttg aacagaagat cgatcgcgcc
     3541 gctgtcgctc tcgtattcct gagcctgtgc gagaaactca tcgagattcg tctcgcttgc
     3601 gtcgcccgtg ccgccagcga acagcagaaa cattcgcatg gtctgaatgg gatcctgcga
     3661 tgccagaagg cctgcgcgat ccgccgagaa ctcggccttg cgataccact cgagcagggc
     3721 gagctgaatc gggagagcga tgagaccgag gccgggaatc gcgttgaagc cgaacgatag
     3781 aaagagcagc gcgagggtcg agtacgtgga atgcccgctc atgacatgtc cgacttcgtg
     3841 accgagcaac acgcgttgct gcggctcgtc gagtattccg agcgcgcccg tatgtacgac
     3901 tatgaacggt ttctcgaaac ccaccgccat cgcgttgacg aacggagtct gcgtgacgaa
     3961 cagatccggc cgcacgggcc agtcgagcgt ctcgagcact tccatgtaca acgaatgcag
     4021 ctttggacgc tggcgctcgt tgacgcgcac cgaatccgcg gtgaatagct gccgcacgcc
     4081 gcgctcgccg agaaagctca tcactcggcg aacgagctcg tccagtccgg ggatcgcgcg
     4141 caacgtctgc agcgccgcgc gatccgcagg gtgttcccac gcaaccggcg cgatgccggt
     4201 gagcgtgcgt cgccgggacg gagccgggac cggcagttcg cccgtcatct cagcgcctga
     4261 tcgaggtcgg caatgagatc accgacatcc tcgactccac acgacagtcg cacgagtcct
     4321 tcagtgattc cgagctgggc gcgccgcgcc ggttctactg aggcgtgtgt catttcagca
     4381 gggtggttga tgaggctctc gacaccgccg agtgattcgg cgagcgagaa tacgtgcacg
     4441 cgcccgagca tgcgggcagc ggcttcgcgg cttcccgttt cgaccgagat catgccgccg
     4501 aatcccttca tctgcttcag tgccagcgcg tgctgcggat gcgattccaa tcccggatag
     4561 aacacgttct gctcgcccat gcgttttgcc agccatgcgg ctatctcgcg accattgctg
     4621 tcgtgtcgcg ccatacggag gtgcagagtc ttggtgccgc gcagaacgag ccacgcgtcc
     4681 atgggacccg gaaccgcacc tgacgcgttg aggatgaact gcatgcgcgt ggcgagctcg
     4741 tcattgtcga cgagcgcgat tccaccgatc atgtcgctgt gaccgttgag atacttggtc
     4801 gatgagtgcc agacgatgtc cgcgccaagc gtgaacggct gctgcaggta cggcgatgcg
     4861 aaggtgttgt cgacgacgag cagggcgttg tgcgaatggg cgatgtcggc cgcagcctgg
     4921 atgtcggtga ggcgcatcag cggattcgtc ggcgtctcga tgatgatcgc ggcg
//
LOCUS       DATIMD010000189         7119 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1800879, whole genome shotgun sequence.
ACCESSION   DATIMD010000189 DATIMD010000000
VERSION     DATIMD010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7119
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1800879"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..238
                     /locus_tag="VLI40_04255"
     CDS             <1..238
                     /locus_tag="VLI40_04255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96416.1"
                     /translation="LQALHARRRALCRPCLDWSERRTHLAGSLGAAILDRMVALRYVR
                     RTAGRAVTLSENGARLIERPDTFIREQLAPRAML"
     gene            complement(242..2068)
                     /gene="glmS"
                     /locus_tag="VLI40_04260"
     CDS             complement(242..2068)
                     /gene="glmS"
                     /locus_tag="VLI40_04260"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HSU96417.1"
                     /translation="MCGIVGYIGDKGAGPLLLEGLKRLEYRGYDSAGVAVMNGNGVET
                     RKAAGKISRLETVLNAMPIAGSVGIAHTRWATHGAPNECNAHPHVSMDGTVAVVHNGI
                     IENFSLLRSKLQALGYKFVSETDTEVLAHLIQEAYEDSLEQAVMDALSQIEGTYGIAV
                     VSSRDPNKLVAARQGSPLLIGLGEGEYYVASDVSAILSHTRQVVYLDDGDIAVLDRNG
                     YRVFDNDAREMRRSVSKVDWDLGQIERGGYSHFMLKEIFEQPQTIENTMRGRLLPDTG
                     TAKLGGLNLSDEDLLRFDNIVLTACGTSWHSALIGGMMLEDLARIPTKVEYASEFRYR
                     NPVVTDRTLCIVISQSGETADTLAAMREAKHRGARTMGIVNVVGSTIARESDGGSYIH
                     AGPEIGVASTKAFSSQVTALLMFTLKLARLRALSTVRGREIVEALHALPAQVQNILDR
                     ADEIEALAEEFKRASNFLYLGRGYNFPTALEGALKLKEISYIHAEGYPAAEMKHGPIA
                     LIDEMMPVVFIAPHDSVFEKVVSNVQEVKARKGKVIAITSRPEPSLAGLIDYEFRIPE
                     TLDLVTPILASVPLQLLAYYIAVKRGSNVDQPRNLAKSVTVE"
     gene            complement(2237..3556)
                     /locus_tag="VLI40_04265"
     CDS             complement(2237..3556)
                     /locus_tag="VLI40_04265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96418.1"
                     /translation="MTAFVACVPLMAGALAAQTTNDRLPGQGGQGLTLMVLPPSPETH
                     QPLRYVLNEPAYVAAFLVYPGAGVRLLYPLVDQPERLHSSGYNTDELIGASFDNDIYS
                     VVLGPTSPGPVYLYVVASKHPLDVARYVHRPMTLASAVGEKDARSFYSDVAFDALLNN
                     AISLGDDDSWDSDMYILWPNADVQDARAFAQVTRVLCADGTARMVPLNYPFAGCPGQQ
                     HIRPLGQVERPVQRTALGEVNAHTAARATGRAQLASRSFANAPTVLPTIIGDRAAAAA
                     QRAAHARDASWRGTIITAANGDGQAVGPAAASAAASAAGVEVFDASGRVRRGNQEWRD
                     GDGSRTRFSAEKRQEWREQHPDGHDVRDGHDIRVGGSPSLPPNPRLSPNPGLSPNPGM
                     SNQQRSAPRFEAPRTMGSSPPPMRSAPTVGELPAPSKGTSTPAKQDH"
     gene            complement(3691..5070)
                     /gene="glmM"
                     /locus_tag="VLI40_04270"
     CDS             complement(3691..5070)
                     /gene="glmM"
                     /locus_tag="VLI40_04270"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR03990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HSU96419.1"
                     /translation="MTSYPGLMVSVSGVRGRVGEALTPEIVSRFAAGFGSWALARDPA
                     KTKIVLGRDSRVSGPMFHHAVIAALESIGARIIDIGVVPTPTIQLAVEHHHAAGGLGI
                     TASHNPIEWNALKFIGSSGLFLDGDEARDMRAVVESNFPRATWDRLGTIERDDAAIER
                     HIEAILALPFIDVEGIRARNFRVALDCVRGAGGRFMPNLLDRLGCDVSSINMEVDGRF
                     PRPPEPVAENLGELEALVRNSGAAVGFAVDPDVDRLALVSNDGKAIGEDYTLALAASV
                     VLGHREGPVVTNLSTSRIVDDVAERAGRKVVRAPVGEVNVATRMRSEKAAIGGEGNGG
                     VILTEMHLGRDAPVGVALILQLLHQENRPLSAIVSDYPRYFIVKEKVDLPPAPLDSVY
                     KSLRSAFPDATVDTQDGMRLSWRYRWVHVRPSGTEPIVRIIAEAPTQTDAQALIHAGR
                     EAVEKLSKS"
     gene            complement(5175..6185)
                     /locus_tag="VLI40_04275"
     CDS             complement(5175..6185)
                     /locus_tag="VLI40_04275"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HSU96420.1"
                     /translation="MFCVIADDEPRLRQVLVRLMTSDGFTCLEAADGVEALERLDSVP
                     AALLLSDLRMPRMDGIELLRQARAKYPDLAVILITAVADVELALSCLASGAMDYLTKP
                     FHLEEVLARVGQAMEKRRLILENRDYQTGLERLVATQARRLEELFLGGVQALVQALEV
                     KDQYTRGHSIRVSQYSSLLAREIGLSESMVRQIELGGQVHDIGKIGVREAVLNKEGPL
                     TDEEYQHIMTHPMLGWQILSPLLGEEPVALSIVRSHHERFDGRGIPDKLAGMDIPMEA
                     RIAGIADAFDAMTSGRAYRRGRYMSSEDAIAEITRCSGTQFDPELAPAFIRVIRREKL
                     AS"
     gene            6262..>7119
                     /locus_tag="VLI40_04280"
     CDS             6262..>7119
                     /locus_tag="VLI40_04280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSU96421.1"
                     /translation="MTKIFDEDMSAAFGTRAIHAGQRPDPLSGAIMTPIYQTSTYVQE
                     ALGVNKGYEYARGRNPTREALERNVAALEGAKYGFAFSSGMGCLDSIMKLFKSGDHFV
                     VGENVYGGTYRLFDKILRNYGMTFSYVDTRDPQLIADACTGNTAAIIIETPTNPLMRL
                     TDIQAAADIAHSHNALLVVDNTFASPYLQLPFTLGADIVWHSSTKYLNGHSDMIGGIA
                     LVDNDELATRMQFILNASGAVPGPMDAWLVLRGTKTLHLRMARHDSNGREIAAWLAKR
                     MGEQNVFYPG"
BASE COUNT         1337 a         2317 c         2107 g         1358 t
ORIGIN      
        1 tcttcaggcc ctgcacgcca gacgaagggc gctctgtcgt ccgtgtctcg actggagcga
       61 gcgtcgcacc cacctcgccg gctcgctcgg cgctgcgatc ctcgaccgca tggtcgcgct
      121 acgttacgtg cgtcgaacag caggccgcgc tgtgacgctc tcggaaaacg gagcgaggct
      181 catcgagcgg cccgacactt tcattcgcga gcagctcgcg cctcgcgcga tgttgtgacc
      241 gctactcgac cgtcaccgac ttggcgagat tgcgcggctg atccacgttc gaaccgcgct
      301 tcaccgcgat gtagtacgcg agaagctgca gcggcaccga cgcaagaatt ggcgtcacga
      361 gatcgagcgt ttcaggaatc ctgaactcgt aatcgatgag ccccgcaagt gacggctccg
      421 gccggctggt gatcgcaatc accttgccct tccgcgcctt tacctcctgc acattcgaca
      481 cgactttctc gaacacggaa tcgtgcggtg cgatgaatac caccggcatc atctcgtcga
      541 tcaacgcgat cggcccgtgc ttcatctcag cggccggata accctcggcg tggatgtagc
      601 tgatctcctt gagcttgagc gcgccttcga gtgcggttgg aaaattgtag ccgcggccga
      661 gatacaggaa gttcgacgcg cgcttgaact cttcggcaag cgcttcgatc tcgtcggcgc
      721 gatccagtat gttctgaacc tgggcaggga gcgcgtgcaa cgcttccacg atctcgcgtc
      781 cgcgcacggt ggagagcgca cgcagtcgtg cgagcttgag cgtgaacatc agcagcgccg
      841 tcacctggct cgagaacgcc ttggtggacg cgacaccgat ctccggtccg gcgtgaatgt
      901 acgacccgcc atcggactca cgcgcgattg tggatccgac aacgttcacg attcccatgg
      961 tacgcgcgcc gcggtgcttc gcttcacgca tcgccgcaag cgtgtcggcc gtctcgccgg
     1021 actgtgagat cacgatgcac agtgtgcgat ccgtgactac cggattccga tagcgaaact
     1081 ccgatgcgta ctccaccttg gttggaatgc gcgcaagatc ttcgagcatc attccgccaa
     1141 tcagcgcgga gtgccagctg gtgccacagg ccgtgaggac gatgttgtcg aagcggagca
     1201 gatcttcatc gctgaggttg agaccgccaa gtttcgccgt cccagtatcc gggagaagac
     1261 ggccgcgcat cgtgttctcg atcgtctgcg gctgctcgaa gatctccttg agcatgaagt
     1321 gcgagtagcc accgcgctcg atctggccca ggtcccagtc gaccttgctc acactgcggc
     1381 gcatctcacg tgcgtcgttg tcgaacacgc ggtatccgtt gcgatccagt acggcgatat
     1441 cgccgtcgtc cagatacact acctggcgcg tgtgcgagag aatcgccgat acgtcgctcg
     1501 cgacgtaata ctcgccctcg ccaagcccga tgagaagcgg gcttccctga cgtgcggcga
     1561 cgagcttgtt ggggtcgcga ctggatacga ccgcgatacc gtacgtcccc tcgatctggg
     1621 acagtgcgtc catcaccgcc tgctcgagcg aatcctcgta cgcttcctgg atcaggtgcg
     1681 cgagcacttc ggtgtcggtc tccgaaacga acttgtagcc gagcgcctgc agcttgctgc
     1741 gcagcagcga gaaattctcg atgatgccgt tgtggacgac cgcgaccgtt ccgtccatcg
     1801 acacgtgcgg atgcgcgttg cactcgttcg gcgcgccgtg ggtagcccag cgtgtgtggg
     1861 cgatgccaac gctgccggct atgggcatgg cattcaggac ggtctcgagg cgcgagatct
     1921 tgcccgctgc cttgcgcgtt tcgacgccgt tgccgttcat gacagcgacg cccgccgagt
     1981 cgtatccgcg gtactcgagc cgtttgaggc cctcgaggag gagggggcct gcgcccttgt
     2041 caccgatata accgacgatt ccgcacatgg aatatttgtt tcttgtttgg ggataggcga
     2101 cccgagttcg ggtcgctgcc gcatcctgcc caatttagag gtcgcgcgcc cgggtggcta
     2161 cgccgggacg cgtcagcggg cggatggccg actttattcc ggccatccgc ccgctgacac
     2221 tcgttccaaa cgctatctag tggtcctgct ttgctggcgt gctggttccc ttgctcggcg
     2281 ccggaagctc gccgaccgtc ggcgcgctcc gcatcggtgg cgggctcgag cccatcgtcc
     2341 gtggcgcctc gaacctcggc gctgaccgct gctgattact catgcccgga ttgggtgaga
     2401 ggcccgggtt cggcgagagc cgcgggttgg gcggaagcga gggcgatccg ccgacacgaa
     2461 tgtcgtggcc atcgcgcaca tcgtgcccat ccgggtgctg ctcacgccat tcctgtctct
     2521 tctcggcgga aaaccgcgtg cgcgaaccat ctccgtcgcg ccattcctgg ttccccctgc
     2581 gcactcggcc tgacgcgtcg aatacctcga ctccggccgc cgatgcagcg gccgacgcgg
     2641 ccgctggtcc gaccgcctgg ccatcgccat tggcggcagt gatgattgtt ccacgccagc
     2701 tggcgtctcg cgcatgtgca gcacgctgcg cagcggcggc agcgcgatca ccgattatcg
     2761 tcggaagaac ggtcggagcg ttggcgaagg agcgcgacgc aagttgcgcc cgcccggtcg
     2821 cacgcgcggc tgtgtgagcg ttgacctcac ccagggcggt ccgctgcact gggcgctcta
     2881 cctgtccgag cggacgaata tgctgctggc ccgggcaacc ggcgaacggg tagttgagcg
     2941 gaaccatgcg cgccgtgccg tcagcgcaca ggacgcgggt gacctgcgcg aaggcgcgtg
     3001 cgtcttgcac atcggcattc ggccagagga tgtacatgtc cgagtcccac gaatcatcat
     3061 cgcccagcga gatcgcgtta ttgagcaacg cgtcgaacgc aacatcggaa tagaatgatc
     3121 gcgcgtcctt ttcgccgacc gcggacgcca gcgtcatcgg cctgtgcaca taacgcgcga
     3181 cgtcgagcgg atgcttcgac gccaccacgt acagatacac cggtccgggt gacgtcggac
     3241 cgagaacaac actgtatatg tcgttgtcga acgacgcacc gatcaactca tcggtgttgt
     3301 agcccgaact gtgcagcctt tccggttgat ccaccaacgg atagagcaac cgcacgcctg
     3361 caccgggata gacgagaaac gcagcaacgt atgcgggctc gttcaacacg taacgcagcg
     3421 gttggtgcgt ctcaggcgac ggcggcagca ccatgagcgt gagaccctgc ccgccctgac
     3481 cgggcaatcg atcgttcgtg gtctgcgcgg cgagcgcgcc ggccatcagt gggacgcagg
     3541 caacaaatgc tgtcatcctc ataaccacct cgcggttgat ccagctgtcc ccaactcagc
     3601 gcaatctacg tgccctgcac tgtacccctt cccatgaata ctacgcacca gagctgaaaa
     3661 tgctacgtga attgcaacct gattttcaca tcatgatttt gacagcttct cgacagcttc
     3721 cctacctgcg tgaatgagcg cttgtgcatc ggtctgtgtt ggcgcttcag caatgatccg
     3781 tacaattggt tcggttccgg agggccgcac gtgaacccag cgatagcgcc acgaaagtcg
     3841 cattccatcc tgagtatcga cggtagcatc agggaatgca gagcgcaggc ttttgtatac
     3901 agaatccagc ggtgctggtg gaagatcgac cttttccttc acgatgaaat atcgcggata
     3961 atcactcacg atcgccgata gcggacggtt ttcctgatgc agcaattgta agatcagtgc
     4021 aacgcccacc ggtgcgtcac ggccgagatg catctccgta agaatcactc caccgtttcc
     4081 ctcgccgccg atcgctgcct tctcgcttcg catgcgcgtc gcgacgttca cctcgccaac
     4141 cggagcgcgc actaccttgc gtcccgcacg ttctgcgacg tcatccacga tgcgactcgt
     4201 ggagagattt gtgacgacgg gcccttcgcg atgtccgagc acgacactcg ccgcgagcgc
     4261 gagcgtgtag tcctcgccta ttgccttgcc gtcattggat acgagcgcga gacgatcgac
     4321 gtccggatcg acggcgaatc cgaccgcggc accactgttc cgcacgagcg cttcgagttc
     4381 gccaagattc tcggcgaccg gttcgggcgg tcgcggaaaa cggccatcga cttccatgtt
     4441 gatcgacgaa acgtcgcagc cgagtcggtc cagaaggttg ggcatgaaac gaccaccagc
     4501 gccgcgcaca cagtccagcg cgacacggaa gttccgcgcg cggattccct cgacgtcgat
     4561 gaacggcagc gcaagtatcg cctcgatgtg tcgctcgatc gccgcgtcgt cgcgctcgat
     4621 ggtgccgagc cggtcccatg tcgcacgcgg aaaattgctc tcgacgacgg cgcgcatgtc
     4681 gcgtgcttcg tcgccgtcca gaaacagtcc ggaagatccg atgaacttga gcgcattcca
     4741 ctcgatggga ttgtgactgg ccgtgatacc gagtccgccg gctgcgtggt gatgctccac
     4801 cgcgagctga atcgtcggcg tcggaactac gccgatgtcg atgatccggg cgccgatact
     4861 ctcgagcgcg gcgatcactg catgatgaaa catcggcccg ctcacgcggc tgtcgcggcc
     4921 gagcacgatc tttgtctttg ccggatcacg cgcgagcgcc caactgccaa agcccgctgc
     4981 aaatctggag acaatctccg gagtcaacgc ctcgccgacg cgcccgcgca caccggacac
     5041 acttaccatc aagcctggat aggatgtcat gtcagatatg aaaagccgat ataaaagctg
     5101 atgcccgtgc agaacgcacg ggcatcaatg aaatctacgc cgcaggctga agaaccgaag
     5161 tcttcgacga gacgctagct cgccagcttc tcgcgtcgaa taaccctgat gaatgccggt
     5221 gcaagctcgg gatcgaactg agtgccggag catcgcgtga tctcggcgat agcatcttcg
     5281 gatgacatgt aacggccccg acggtatgca cggccgctcg tcatcgcgtc gaaggcatct
     5341 gcgatgccag ctatgcgcgc ctccatcgga atatccattc ccgcaagctt gtccgggatt
     5401 ccgcgcccgt cgaaacgctc gtggtgggat cgcacgatgc tgagcgccac aggctcctcg
     5461 ccgagcagcg gagacaatat ctgccagccc agcatggggt gcgtcatgat atgctggtat
     5521 tcctcgtccg tgagcggccc ttccttgttg agcaccgcct cgcgcactcc gatcttgcct
     5581 atgtcgtgga cctggccgcc cagctcgatc tgccggacca tcgactccga aagtccgatc
     5641 tcgcgcgcaa gaagcgacga atactggctc acccttatcg aatgcccgcg ggtgtactga
     5701 tccttgacct ccagggcctg cacgagggcc tgaaccccgc ccaggaacaa ttcctcgagc
     5761 cggcgtgcct gggtcgccac aagccgctcc aggccggtct ggtagtcacg gttttccagg
     5821 atcagccggc gcttttccat ggcctgcccg acccgcgcca gcacttcttc gaggtgaaac
     5881 ggcttggtga gatagtccat cgccccgctg gcaaggcagc tcagggcaag ctcgacgtcc
     5941 gccaccgcgg tgatgaggat gacggccaga tcgggatatt tggcccgtgc ctggcgcagc
     6001 aattcgatgc catccatcct cggcatccgt agatcgctca gcagcagggc ggccggaacc
     6061 gagtccagcc gctccagcgc ctcgacgccg tcggcggctt cgagacatgt gaagccgtcg
     6121 cttgtcatca gacggacgag cacctgccgg aggcgcggct catcgtccgc gataacacaa
     6181 aacatgggct cgggcgccgt cacgtcatca cctccttcat atttccaaga ggtattctag
     6241 cctccgatcc ctccacctgc catgacgaag atcttcgacg aagacatgtc cgctgccttt
     6301 gggacccgtg ccatccacgc tggccagcgc cccgatcccc tctcgggcgc gatcatgacg
     6361 cccatctacc agacgtccac ctacgtccag gaagcactcg gcgtcaacaa gggctacgag
     6421 tatgcccgcg gacgcaatcc gacccgagaa gcgctcgaac gcaacgtcgc cgcactggaa
     6481 ggggcgaagt acggattcgc cttctccagc ggaatggggt gtctcgattc catcatgaag
     6541 ctcttcaagt ccggtgatca tttcgtcgtc ggcgagaatg tctacggcgg cacgtacaga
     6601 ctgttcgaca agatcctgcg caactacggg atgacattct cctatgtcga cacgcgcgat
     6661 ccgcagctca tcgcggacgc gtgcaccggt aacaccgccg cgatcatcat cgagacgccg
     6721 acgaatccgc tgatgcgcct caccgacatc caggctgcgg ccgacatcgc gcattcgcac
     6781 aacgccctgc tcgtcgtcga caacaccttc gcatcgccgt acctgcagct gccgttcacg
     6841 cttggcgcgg acatcgtctg gcactcgtcg accaagtacc tcaacggtca cagcgacatg
     6901 atcggtggaa tcgcgctcgt tgacaacgac gagctcgcca cgcgcatgca gttcatcctc
     6961 aatgcgtcag gcgccgttcc gggtcccatg gacgcgtggc tcgttctgcg cggcacaaag
     7021 actctgcacc tgcgtatggc gcgacacgac agcaatggtc gcgagatcgc cgcatggctg
     7081 gcaaaacgca tgggcgagca gaacgtgttc tatccggga
//
LOCUS       DATIMD010000190         5462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_68727, whole genome shotgun sequence.
ACCESSION   DATIMD010000190 DATIMD010000000
VERSION     DATIMD010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5462
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68727"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1050)
                     /locus_tag="VLI40_04285"
     CDS             complement(<1..1050)
                     /locus_tag="VLI40_04285"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSU96422.1"
                     /translation="MTVAGWLGGRSRSERMATLAALPLLLVLVWTVIYPNVAVIVGSM
                     GHWREFAESPSDVEALKNSIIIAVASVAASLAIGVPLAFLLTRFDFPGRTILRAAALL
                     PAALPPLVGVISFLFLYGDTGVITRLVQIALRLNDVPWHLNGIGAIIFIHAYTMYVYV
                     YLFVSAGLERYEASLDEAAIGLGAGTIRRLTRVTLPLLTPAIAGSALLVFMSALGSFS
                     APYVFGGGVRVLSTQILNSKLNDAIGLAYVETTVLAISAVAGLLLFRWLEGKRAYVAA
                     GKGGASRQPVRSRWARIGLAAAAGLIVLVLVLPHLMIVLVSFAKDGAWTTQVLPPEYT
                     THNYAGLFTENQLWTP"
     gene            complement(1047..2138)
                     /locus_tag="VLI40_04290"
     CDS             complement(1047..2138)
                     /locus_tag="VLI40_04290"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU96423.1"
                     /translation="MDEILGRTHQESRVSGDGSGLVVDSIVRTFSGQTAVDHVSFEVR
                     PGELVALVGASGSGKTTTLRIVAGYEQPDSGRVLFDGQDITRLGPSKRDFGMVFQHYA
                     LFPHMSVAENVAFGLEARGVGRSERMQRAGAALDRVGLGGKGARMVQQLSGGEQQRVA
                     LARAAVIGPRLLLLDEPLSNLDPTLRQSTRDELRTTLKESKAPALFVTHDQDDAFAIA
                     DRIVLLSRGRVLQDGSPEDLYDRPATRDVAMFIGHATLIPAHRHGDSATVTIAGATHR
                     VALSSFTGIEDGGAGAIVLRPEAVEIARDDGGDQWSATVTARRFAGAQFVYRLRLDDD
                     IVFDVASRERIEPGAAVPVRVTRPVPMVP"
     gene            complement(2096..3133)
                     /locus_tag="VLI40_04295"
     CDS             complement(2096..3133)
                     /locus_tag="VLI40_04295"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HSU96424.1"
                     /translation="MTLRRVAGSIVCALAAAMLGSCVHDNRTVLTVYSPHGIDLLKYY
                     ETEFEKAYPTIDVQWVDMGSQEVLDRIRGEAVNPQADVWFGAPSESFERAAKENLLQP
                     YRPTWANDVPAEAHDPHDLWYGTYLTPEVIAYNGDAIPRDSAPQDWDDVLDPKWRGKV
                     IIRDPIASGTMRAIFGAIIAKSVTETGSPQRGYDWLRRLDANTKEYVLNPTILYQKLK
                     SREGLITLWDMPDVATMRDRVGIPIDYVIPRSGTPLLVDAIAIVRGTKHPREAKLYYE
                     FVTTQHAQLEAARQFLRIPARTDIPTDSLPAWIQTAMKQIKPMPVNGALLAEHLNEWM
                     RYWDAHIRNRG"
     gene            complement(3130..5361)
                     /locus_tag="VLI40_04300"
     CDS             complement(3130..5361)
                     /locus_tag="VLI40_04300"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019213 - deacetylase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HSU96425.1"
                     /translation="MMATALGVTLMPRFLTAQERGIVALAEAKAAAGVHTRVLVIGAH
                     PDDEDTQLIAWLARGHRAETAYLSLTRGDGGQNLIGNELGEALGVIRTEELLAARRID
                     GAHQYFTRAYDFGFSKTAAESFSHWPRDSVLGDMIKVVRGFRPQIIVSVFSGTPRDGH
                     GQHQVAGILSREVYDAAADTVRFPVSKFGKPWTVSKFYRGARFSREDGTISMNVGEYD
                     PILGLTYAEIAAESRSQHKSQGFGSSARKGVVIDYLRREATRVNAATPAQSERSMFEG
                     LDTAHDVTQADRNRVALADAGVDVEAVAERARVALGDSVAVHIAVYRSGMVDSSALRT
                     IYIHGEQLTQPYWLVRPRVGDLFAFASDSISDDEREKQSWVPVTVNLPGLAPVVVRTP
                     AIYRYADPVRGEIEEPLATAPGVSVTFDRDVELARAGAPLDRTFQLTLRSSWPTAHAL
                     QVRLEVPSGMAVDSSQRSVTLGSGETRIVTFRATGRVAAGTHAVRAVVVDGTQRDSIG
                     FIPIDYSHITPERMYRKAEVTIQAVNVIVPPHALIGYIQGVGDNVADALRDLGLTVQD
                     LNPAALPTSDLSRFSTIVVGPRAYQANRLLIDNNGYLMNYVRRGGNLVVQYGQNEMQE
                     AGVMPYPIKLARPAARVTDENAPVTIIEPRSTLLDTPNRITSADFTGWVQERATYMPS
                     TFDPHYSTALRMNDPGEEPNSAGLLTTQLGKGHYTYVTLALFRQLPAAVPGGARIFAN
                     LLR"
BASE COUNT         1039 a         1815 c         1630 g          978 t
ORIGIN      
        1 gggcgtccac agctggttct cggtgaacag gcccgcgtaa ttgtgcgtgg tgtattcagg
       61 cggtaacacc tgggtcgtcc atgccccgtc cttcgcgaag gatacgagca cgatcatgag
      121 atgcggcaac accagcacga gcacgatgag accagccgca gccgcgaggc cgatgcgcgc
      181 ccaccgcgaa cgaaccggct ggcggctcgc accgcccttg ccggcggcaa cgtacgcccg
      241 cttcccttcc agccatctga acagcaacag tcctgcaacc gcgcttatcg caagcacggt
      301 cgtctcgacg tacgccagtc cgatcgcgtc gttcagcttg gagttgagga tctgggtcga
      361 cagaactcgc acgccgccgc cgaaaacgta cggagcggag aaagagccga gtgcactcat
      421 gaagacgagc aacgccgatc ccgcgatcgc cggtgtgagc agcggaagcg ttacacgggt
      481 caggcggcga atagtaccgg caccgaggcc gatcgccgct tcgtccagcg atgcctcata
      541 acgttcgagc ccggccgata cgaacagata tacgtacacg tacatcgtgt acgcgtgtat
      601 gaagatgatc gcaccaattc cgttcaggtg ccacggtaca tcattgagtc ggagcgcgat
      661 ctgcacgagt cgtgtgatca cgccggtatc gccatacaga aacagaaacg agatgacacc
      721 gacgagcggt ggcagcgccg ccggaagcag tgcggcggcg cgcaatatgg tccgccccgg
      781 aaagtcgaat cgcgtgagga gaaacgccag cggtacaccg atcgccagcg acgcggcgac
      841 cgatgcgacc gcaatgatta tgctgttctt gagtgcctcg acgtccgacg gtgattccgc
      901 gaactcgcgc cagtgaccca tgctcccgac gatcaccgcg acattcggat agatcaccgt
      961 ccacacgagc acgagcagaa gcgggagtgc agccagcgtt gccattcgct cagagcgact
     1021 gcgtccaccg agccagcctg ccactgtcac ggtaccattg gaaccgggcg cgtgacacgc
     1081 acgggcacgg cagcgcccgg ttcgatgcgc tctcgcgacg cgacgtcgaa cacgatgtcg
     1141 tcgtccagcc gcagacgata gacgaactgc gcaccggcga atcttcgcgc ggtcacggtc
     1201 gcactccact gatcgccacc gtcgtcgcgc gcaatctcaa ccgcttcggg gcgaagtaca
     1261 atcgcgccgg cgccgccgtc ttcgatgccg gtgaacgagc tcaacgccac cctgtgtgtc
     1321 gcaccagcga ttgtcacagt cgcggaatca ccgtggcgat gcgctggtat cagcgtcgcg
     1381 tgcccgatga acatcgcgac atcgcgagtc gccggcctgt cgtagagatc ttcgggcgag
     1441 ccgtcctgca gcacacgccc gcgcgatagc agcactattc gatcggcgat ggcaaatgcg
     1501 tcgtcctgat cgtgcgtgac gaacagcgct ggcgcctttg actccttgag cgtcgtacgc
     1561 agctcgtcac gcgtgctctg cctgagcgtc gggtccagat tggacagagg ctcgtccagc
     1621 agcagcaggc gcggaccgat caccgccgcg cgagcgagcg cgacgcgttg ctgctcgcct
     1681 ccggaaagct gctgcaccat ccgtgcaccc tttccaccga gccccacacg atcgagcgcc
     1741 gcgccggcgc gctgcatgcg ctccgaacgg cccacgccgc gcgcctcgag tccgaacgcg
     1801 acgttttcag cgacggacat gtgcggaaat aacgcgtaat gctggaacac catgccaaag
     1861 tcgcgcttcg acggaccgag ccgggttata tcctgaccgt cgaatagcac tcggccacta
     1921 tcgggctgtt catagccggc gacgattctg agcgtcgtcg tcttcccgga ccccgacgca
     1981 ccgaccagcg cgacgagctc accagggcgc acctcgaacg aaacatgatc caccgcagtc
     2041 tgaccactga aggtgcgcac gatgctgtcg accaccaggc ccgagccgtc cccgctcacc
     2101 cgcgattcct gatgtgtgcg tcccaatatc tcatccattc gttcagatgc tccgccagta
     2161 atgcgccgtt gacaggcatc ggcttgatct gcttcatcgc cgtctgtatc catgcaggca
     2221 gcgaatccgt cggaatgtcc gtgcgtgcgg gaatgcgcag gaactgccga gccgcctcca
     2281 gttgcgcgtg ctgcgtcgtc acgaattcgt aatacagctt cgcctcgcga ggatgtttcg
     2341 taccgcgcac gatggcgatc gcatctacca gcagcggggt tccgctacgc ggaatcacgt
     2401 aatcgatcgg aatacccaca cgatcccgca tcgtcgctac atcaggcatg tcccacagcg
     2461 ttatcagacc ctcgcgactc ttcagcttct gatacagaat cgtgggattg agcacgtact
     2521 ccttggtatt tgcatcgagc cgccgcagcc agtcgtagcc tcgctgcggt gagcctgtct
     2581 cggtaacgct cttggctatg atcgcgccga atattgcgcg catggtcccc gatgcgatcg
     2641 gatcgcgtat gatcaccttg ccgcgccact tgggatcgag aacgtcgtcc cagtcctggg
     2701 gcgcgctgtc acgcggaatc gcgtcgccgt tgtaggcgat cacttccggc gtgaggtagg
     2761 taccgtacca gaggtcgtgt ggatcgtgcg cctctgccgg aacgtcattc gcccacgtcg
     2821 gacgatacgg ttgcagcaga ttctccttcg ccgcgcgctc gaacgactcc gacggcgcgc
     2881 cgaaccagac gtcggcctgg ggattcacgg cctcgccgcg aatgcggtcg agaacttcct
     2941 gcgaccccat gtccacccac tgcacgtcga tggtgggata cgccttctcg aactccgtct
     3001 cgtagtactt gagcagatcg attccgtgcg gtgaatagac cgtcagcaca gttcgattgt
     3061 cgtgcacgca cgatccaagc atcgccgcgg ccaacgcgca gacgatgctt cccgccacgc
     3121 ggcggagcgt caccgcagca ggtttgcgaa tatgcgcgcg ccgcccggta cggcggccgg
     3181 aagttgacgg aacagagcga gtgtcacgta cgtgtagtgg ccctttccaa gctgtgtcgt
     3241 gagaagcccg gcgctgttgg gctcctcgcc aggatcgttc atgcggagtg ccgtcgaata
     3301 gtgcgggtcg aacgtgctcg gcatgtaggt cgcgcgttcc tgcacccagc ctgtaaagtc
     3361 cgcgctcgtg atcctgttgg gagtatcgag cagcgtgctg cgcggctcga ttatcgttac
     3421 cggtgcattc tcgtccgtta cgcgagccgc cggccgcgca agcttgatcg ggtacggcat
     3481 cacacccgcc tcctgcatct cgttctggcc atactgtacg acgagattcc cgccgcggcg
     3541 cacgtagttc atcaggtaac cgttgttgtc gatcaggagc cggttagcct gatacgcgcg
     3601 cggaccgacc actatcgtgc tgaaacgtga caggtcggag gtaggaagcg cagccggatt
     3661 caggtcctga acggtcaatc cgagatcccg cagcgcatcc gccacattgt cgccaactcc
     3721 ctggatatat ccgatcaagg catgcggcgg cacgatcacg ttcacggcct ggatcgtcac
     3781 ctcggccttg cggtacatcc gctccggagt gatgtgactg taatcgatcg ggatgaatcc
     3841 gatactgtcg cgctgagtgc catccacaac gaccgcgcgc acggcgtgcg tccccgccgc
     3901 aacgcgaccg gtcgcccgga acgtcacaat tctcgtttct ccactgccga gcgtcacgct
     3961 gcgctgactg gaatcgaccg ccattccgct cggtacttcg agtcgcacct gcagtgcgtg
     4021 cgccgtcggc catgacgacc ggagagtcag ctgaaatgtg cgatcgagcg gcgcacccgc
     4081 acgcgcaagc tcgacgtccc gatcgaacgt gacagatact ccaggcgcgg tggccagagg
     4141 ctcctcgatc tcaccgcgca caggatcagc gtaacggtag atcgcgggag tgcgcacgac
     4201 gaccggagcc agacccggca gattcaccgt caccggcacc cagctttgct tctcacgctc
     4261 gtcatccgag atggaatcgg atgcaaaggc aaacaggtcg cctacacgtg gtcggacgag
     4321 ccagtatggc tgggtcagct gctcgccatg gatgtagatc gttcgcagag cgctgctatc
     4381 caccatgcca cttcggtaaa ccgcgatgtg cactgccacg ctgtcgccca gcgcgacccg
     4441 tgcccgctcg gcaacagcct ccacgtcgac accggcatca gcaagcgcga cccggtttcg
     4501 atccgcttgc gtcacgtcgt gcgcggtatc gagtccttcg aacatcgatc gctcggattg
     4561 cgccggcgtc gccgcattca cacgcgtcgc ctcgcgtcgc aggtagtcga tgaccactcc
     4621 cttgcgcgcg gagctgccaa agccctgcga cttgtgctgg ctgcgactct ccgctgcgat
     4681 ctcggcgtac gtcagaccaa gtatgggatc gtactccccg acgttcatcg agatcgtgcc
     4741 gtcctcgcga gagaaccgtg cgccgcgata gaacttggag acagtccagg gcttcccgaa
     4801 cttgctcacc ggaaaacgca ccgtgtcggc cgcggcatcg tacacttcgc gcgacagaat
     4861 gccggcgacc tggtgctgtc catgcccgtc gcgcggagtt ccggaaaaga cggacacgat
     4921 gatctgcggc cggaaacccc gaacgacctt gatcatgtcg ccgagtacgg agtcgcgcgg
     4981 ccagtgcgag aagctctccg ccgcagtctt ggagaaaccg aaatcgtacg cgcgtgtgaa
     5041 gtactgatgc gcgccgtcga tccggcgcgc ggccagaagc tcctcggtgc gaatcacgcc
     5101 gagcgcctca cccagctcgt tgcctatcag attctgcccg ccatcaccac gcgtgagcga
     5161 caggtacgcg gtctcggcac gatgacctcg cgcaagccat gcaatgagct gggtatcctc
     5221 atcgtccgga tgcgcgccga tcacgagtac gcgtgtgtgt actcctgccg cggccttggc
     5281 ttccgccaac gcgacgatgc cgcgctcctg agcagtcagg aaacgcggca tcaatgttac
     5341 accgagcgcg gttgccatca tggcaacggc tcgtgcgaaa accctcgtcc gatgccttcc
     5401 ggcagtcgtc accgtgctca acgggctgct gcccgcgcgc ggccaccctg cgcaggctgc
     5461 gg
//
LOCUS       DATIMD010000191         5574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_934221, whole genome shotgun sequence.
ACCESSION   DATIMD010000191 DATIMD010000000
VERSION     DATIMD010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5574
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_934221"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..452)
                     /locus_tag="VLI40_04305"
     CDS             complement(<1..452)
                     /locus_tag="VLI40_04305"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HSU96426.1"
                     /translation="MILPVAAAVAAAGTAAYGAFYRNSPVFGSVLHQLPTSDSAVSLT
                     FDDGPNPYATPLVLDALGNAGVRATFFFLGRHVERWPDIARRAAAEGHQIGNHGYYHR
                     KLHFRGMGYVRDDLGRGKAAIETACGVTPAFFRAPHGFRSPWVTAIARS"
     gene            complement(449..1612)
                     /locus_tag="VLI40_04310"
     CDS             complement(449..1612)
                     /locus_tag="VLI40_04310"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSU96427.1"
                     /translation="MYSSAIAGPVLSLAPPRPLRIALVTEYYYPHLGGICEHVHFFAR
                     EARKLGHHVDIITSNLPGAVAENGVIRLGRSQPIYANGSQARITVGLSLRKDMRRVLR
                     EGRYDIVHVHSPLSPILPMLAIEEADCPTIGTFHTYFDKSLGYQLGRKYFQRRLDMLE
                     VAIAVSHSTTIALDRYFEADWTIIPNGIDINLFNPHAPLPPGLRRDVPAVLFLGRFDP
                     RNGLTTLIDSFKRVRGKQRDAQLVVVGDGPLRKHYFRAAGNDPDITFVGSVLKARPSY
                     YAHAAMYACPTTKASFGITLLESMACETPVVCSDILGFRDVVKDGREALMVPCGNRDA
                     LADAMVSLLDDETLRTRLGKTGRREAEQYAWPRVTERVLEQYDSVLARRSAAA"
     gene            complement(1614..4289)
                     /gene="ppdK"
                     /locus_tag="VLI40_04315"
     CDS             complement(1614..4289)
                     /gene="ppdK"
                     /locus_tag="VLI40_04315"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050242 - pyruvate, phosphate dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0015976 - carbon utilization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HSU96428.1"
                     /translation="MTQKVFFFGGGKAEGTKDMKRVLGGKGANLAEMTNLGVPVPPGF
                     TIAATECISYLETGVCPPELRAEVEANVARLEQLSGKKFGDARNPLLVSVRSGAAVSM
                     PGMMETILNLGLNDRTVVVLARASGSARFAYDSYRRFIQMYADVVLGVPSSAFEHLLS
                     AKRMTAGVESDAELSEDQLRNLTEEFKAIVRNQTGTPFPTDPTEQLWGAIEAVWRSWT
                     LKKARDYRRVNGIPETLGTAVNIVAMVFGNLGDDSGTGVAFTRNPSTGEHKFYGEFLI
                     NAQGEDVVAGIRTPIAIDQMATRLPAAFEQLMDTQARLERHFCDMQDIEFTVERGTLY
                     LLQTRTGKRTAAAAVRIARDMVNEGLIKQNDAVLRVPAGQLDQLLHPIIDPAARAKTL
                     CVGLPASPGASSGIAVFDPDIAEARAAEGAAVILVREETTPEDFHGIVAARAVLTARG
                     GMTSHAAVVARGMGKCAVVGCRDIHVDVEHRRFTVGNQTISEGDYITLDGATGRVFAG
                     AIPTIPSEVVQVTNGTMSESAAPLYQAYAQLLGWADEVRTLKVRANADTPRDARIARN
                     FGAEGIGLCRTEHMFFEGERINAMREMIVARDEGGRRRALAKLLPMQRADFEGIFEAM
                     DGLPVTIRLLDPPLHEFLPHGGEESKLLARTLDIPRNDLQRIVENLRETNPMLGHRGC
                     RLGITYSEITEMQGRAIFEAAVKAKRRGIDVRPEIMVPLVSAVTEFDHQRAILEHAAE
                     QVLGVMGETVPYLIGTMIELPRAALTAGEIAKRAEFFSFGTNDLTQTTYGLSRDDAGR
                     FLPSYVESGIFPDDPFQTLDPVGVGRLIRIAVEDGRNARPGIKLGICGEHGGEPRSVA
                     FCHATGLDYVSCSPYRVPIARLAAAHAALEASPGR"
     gene            complement(4292..>5574)
                     /gene="purF"
                     /locus_tag="VLI40_04320"
     CDS             complement(4292..>5574)
                     /gene="purF"
                     /locus_tag="VLI40_04320"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HSU96429.1"
                     /translation="GMVSVSPEGVARATRAMGLISEASARHAPLDARLAIGHTRYSTA
                     GSSTIENAQPILARSRDGHIAIGHNGNLTNATELRRDLENEGSIFSSTIDSEVIVHRI
                     AKAADGAPEARLAAALGPVEGAYSLVAIIGETLLAARDPRGWRPLVMGDVNGAIVFAS
                     ESCALDIVNATAIREVAPGEIIAVDANGIRSIFPFERKASTRCVFEYVYFARPDSRVF
                     GGSVDRARRALGRRLAREVPAPSADLVFAVPDSSNSAALGFAEESHLPYELALIRNHY
                     VGRTFIQPEQSGRDAKVKVKYNAVREVLEGKRVVMVDDSIVRGTTTRGLVAMVRAAGA
                     VEVHMRVSSPPVTGPCYYGIDTPNREDLIAANFSVDEIAKHIGVDSLGYLSLDGMLNA
                     VPDGPEGFCHACFSGDYPTLPPTDPDKLRFGCGC"
BASE COUNT         1006 a         1710 c         1811 g         1047 t
ORIGIN      
        1 gaacgggcta ttgcggtgac ccatgggctg cggaatccgt gcggtgcccg aaaaaatgcc
       61 ggggtcactc cgcacgccgt ttcgatggcg gccttgccgc ggcccaggtc gtcccgcaca
      121 tatcccatgc cgcgaaagtg gagctttcgg tggtagtagc cgtggttgcc gatctgatgc
      181 ccctcggcgg cggcgcggcg tgcgatgtcg ggccagcgct cgacgtgtct gccgagaaag
      241 aagaatgtcg ctctgacgcc ggcgttgccg agtgcgtcga gaaccagtgg cgtcgcgtac
      301 ggattgggtc cgtcatcgaa ggtgagcgag acggcactgt cggatgttgg aagctggtgc
      361 aggacgctgc cgaagacagg actgtttctg tagaatgccc cgtacgcagc cgtgcccgcc
      421 gcggcaaccg cggcggctac gggtaggatc atgccgccgc tgaacgccgc gcgagaacgc
      481 tgtcgtattg ctcgagaacg cgctccgtga cgcgcggcca tgcgtactgt tccgcctcgc
      541 gacggccggt cttgccgagt cgcgtgcgca atgtctcgtc gtcgagcagg ctcaccattg
      601 catcggcgag cgcgtcgcga ttgccgcacg gcaccatcaa cgcctcgcgc ccgtccttga
      661 cgacgtcgcg gaagccgagt atgtcggaac acacgaccgg tgtctcgcac gccatcgact
      721 ccagcagcgt aattccgaac gacgccttgg ttgtcgggca tgcgtacatc gccgcatgtg
      781 cgtagtaact tgggcgcgcc ttgagcaccg atccgacgaa ggtgatgtcc ggatcgttgc
      841 ccgcggcgcg gaagtaatgc ttgcgcagcg gcccatcgcc gacgacaacg agctgcgcgt
      901 cgcgctgctt gccgcgcacg cgcttgaacg aatcgatgag cgtcgtgagt ccgttgcgcg
      961 gatcgaatcg gccgagaaat agaacggcgg ggacatcgcg acgcagacct ggcggcagcg
     1021 gcgcgtgcgg attgaagaga tttatgtcga tgccgttcgg tatgatggtc cagtcggcct
     1081 cgaagtagcg atcgagagcg atcgttgtcg aatgcgatac ggcgatcgcg acttccagca
     1141 tgtcgaggcg gcgctgaaaa tacttgcggc cgagctggta tcccagtgac ttgtcgaagt
     1201 aggtgtggaa cgtgccgatg gtgggacagt cggcttcctc gatcgccagc atgggaagaa
     1261 tcgggctgag tggcgaatgc acatggacga tgtcgtaccg tccttctcgc agcacgcgcc
     1321 gcatgtcctt gcgcagcgac aggccgaccg tgattcgcgc ctgtgagccg ttggcataga
     1381 tcggctggct tcgcccaagc ctgatgactc cgttctccgc gaccgcgccg ggaagattgg
     1441 atgttatgat gtcgacgtgg tggcccagtt tgcgggcttc acgcgcaaaa aaatggacgt
     1501 gctcgcagat gccgcccagg tgcgggtagt aatactccgt gaccagcgcg atcctgaggg
     1561 ggcgcggtgg cgccaggctg aggacggggc cggcaatcgc cgaggaatac atgctagcgg
     1621 ccaggggagg cctcaagagc ggcatgggca gcggcgagcc tggcaatggg aacccggtag
     1681 ggtgagcatg agacgtagtc gaggccggtg gcatgacaga atgctaccga gcgcggctcg
     1741 cctccgtgct cgccgcagat gcccaattta atgcccggtc gggcattccg gccatcctca
     1801 actgcgattc ggatcaggcg gccgaccccg acagggtcca aagtctgaaa tggatcatcc
     1861 ggaaaaatgc cactttctac gtaggaggga aggaaccggc ccgcatcatc gcggctgagg
     1921 ccgtaggtcg tctgggtcag gtcgttggtc ccgaagctga aaaattcggc ccgtttggcg
     1981 atttcgcccg ctgtgagcgc cgccctcggg agctctatca tagtcccaat aaggtacggg
     2041 acggtttccc ccattacacc aagaacctgc tcggcggcat gttccaggat ggcacgctgg
     2101 tggtcgaact ccgtgaccgc cgagacgagc gggaccatga tttcgggcct cacgtcgatg
     2161 ccgcggcgtt ttgccttgac cgccgcctcg aagatcgcgc gaccctgcat ttcggtgatt
     2221 tcggaatagg tgattccgag ccggcatccg cggtgaccca gcatgggatt ggtctcgcgc
     2281 aggttttcga cgatgcgctg aaggtcattg cgcggaatgt cgagcgtgcg cgcgagaagc
     2341 ttgctctcct ctccgccatg cgggaggaat tcatgcagcg ggggatccag caggcgaatg
     2401 gttaccggca ggccgtccat tgcctcgaag attccctcga agtcggctcg ctgcattgga
     2461 agcagcttgg cgagcgcacg ccgccgtccg ccctcgtcgc gcgcaacgat catctcgcgc
     2521 attgcattga tgcgctcgcc ctcgaagaac atgtgctcgg tcctgcagag tccgattccc
     2581 tcagccccga aattgcgcgc tatgcgtgcg tcgcgtggtg tgtcggcgtt ggcgcggacc
     2641 ttgagcgtgc gaacttcatc ggcccatcca agcaactgcg cataagcctg atacagcggc
     2701 gctgcgctct cgctcatggt gccgttggtg acctgcacca cctcgctcgg aatcgttgga
     2761 atcgcgccag cgaacacgcg tcccgtcgcg ccgtcgagcg tgatgtagtc gccttcactg
     2821 atcgtctggt ttccgacggt gaagcggcga tgctcgacgt cgacgtgaat gtcgcggcag
     2881 ccaacgacgg cgcactttcc cattccacgc gcgaccaccg ctgcatggct cgtcatgccg
     2941 ccgcgcgcgg tgagcaccgc ccgtgccgcg acgattccat gaaagtcttc gggcgtcgtt
     3001 tcctcgcgta cgagtattac cgcagcgccc tccgcggcgc gagcctctgc gatgtccgga
     3061 tcgaagaccg caattccgct ggatgcaccg ggactcgcag ggagtccaac gcagagtgtt
     3121 ttggcgcgtg cagccggatc gatgatcgga tggagcagct gatcgagctg tcctgcggga
     3181 acacgaagga cagcatcatt ctgcttgatc agcccttcgt tgaccatgtc gcgcgcgatc
     3241 cgaacggcag cagcggcggt tcgctttccc gtgcgcgtct gcaacaggta cagggtaccg
     3301 cgctcgacgg tgaattcgat gtcctgcatg tcgcagaaat ggcgctcgag ccgcgcctgg
     3361 gtgtccatca gttgttcgaa cgcagccggg aggcgtgtgg ccatctgatc gatcgcaatc
     3421 ggagtgcgaa tgccggcgac gacgtcctct ccctgcgcat tgatgagaaa ttcgccgtaa
     3481 aacttgtgtt caccggtgga cggattgcgc gtgaacgcga cgccggttcc ggagtcgtcg
     3541 ccaaggtttc cgaaaaccat cgcgacgatg ttgacagcgg tgccgagcgt ctccggaatc
     3601 ccgttcactc gccggtagtc gcgcgccttc ttgagtgtcc atgagcgcca gaccgcttct
     3661 atcgcccccc agagctgttc agtgggatcc gttggaaacg gcgtccccgt ctggttgcga
     3721 acaatggcct tgaactcctc cgtgagattc cgcagctggt cctcgctcag ctcggcgtcg
     3781 ctctcgacgc ctgcggtcat gcgcttggca gagagcagat gctcgaacgc gctcgacggc
     3841 acacccagga cgacgtcggc gtacatctgg atgaatcggc gataggaatc gtacgcaaag
     3901 cgtgcactgc cgctcgcgcg cgcgagcacc accacggttc gatcgttgag accaagattc
     3961 agaatcgtct ccatcattcc cggcatcgat accgcggcgc cggaacggac ggatacgagc
     4021 aaggggttac gtgcgtcgcc gaattttttc cccgaaagct gttccagccg cgcgacgttc
     4081 gcttcgactt cggcacgcag ctccggtgga cacacaccgg tttccagata ggagatgcac
     4141 tcggttgcgg cgatcgtgaa accgggcggc acaggtacgc caagattggt catctcggcg
     4201 agattggctc ccttgccgcc gagtacgcgc ttcatgtctt tcgttccttc ggcctttcct
     4261 ccgccaaaga agaagacttt ctgcgtcaca atcagcagcc gcagccgaag cggagcttgt
     4321 ccgggtcggt cggcggcagc gtcggatagt cgcccgagaa acaggcgtga cagaaccctt
     4381 ccgggccatc cgggaccgcg ttgagcatcc cgtcgagcga aaggtagccg agcgagtcga
     4441 cgccgatatg tttggctatc tcgtcgacag agaagttcgc agcgataaga tcctcgcggt
     4501 tgggagtatc gatgccgtag taacagggtc cggtcacggg cggcgagctg acgcgcatgt
     4561 ggacttcgac cgcgcccgca gcacgtacca tcgcaacaag cccacgtgta gtggtgccac
     4621 gcacgatgga atcgtcaacc atgacgacgc gctttccctc cagcacttct cgtaccgcgt
     4681 tgtacttcac cttgaccttc gcatcgcggc cggactgctc tggctggatg aaggttcgcc
     4741 cgacgtagtg gttgcggatg agggcgagct cgtacggaag atgcgactcc tcagcgaatc
     4801 ccagcgcggc ggaattggac gaatcgggca ccgcgaagac caggtccgcg ctcggggccg
     4861 gaacctcgcg tgccaggcgg cgtccgagcg cgcggcgggc gcggtccacg gagccaccaa
     4921 agacgcggct gtccgggcgc gcgaaataga cgtactcgaa gacgcagcgc gtagacgcct
     4981 tgcgctcgaa cgggaagatg gagcgtattc cgttcgcgtc gacagcgatg atctcgcccg
     5041 gtgccacttc gcgaatcgcg gtcgcgttga cgatgtcgag tgcgcaggac tccgacgcga
     5101 acacgatcgc gccgttcaca tcgcccatca cgagcggacg ccagccgcgt ggatcgcgcg
     5161 ctgcgagcag cgtctcgccg atgatcgcga cgagggagta tgccccctcg accggcccga
     5221 gcgcagcggc cagccgagcc tcgggagcgc catcggctgc cttggcgatt cgatgcacga
     5281 tcacttcgga atcgatcgtg gaagaaaaga tcgatccttc attttcgaga tcgcggcgca
     5341 gttcggtcgc gttggtgagg ttaccgttgt gaccgattgc aatatggccg tcgcgcgagc
     5401 gcgcaagtat cggctgcgcg ttctcgatag ttgagcttcc ggcggtgctg tagcgggtat
     5461 ggccgatcgc aagccgcgcg tcgagcggcg catgtcgcgc gctcgcttcg gagatgaggc
     5521 ccatcgcacg cgtcgcccgg gcaacgcctt ccggacttac cgataccatg cccc
//
LOCUS       DATIMD010000192         1941 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2667177, whole genome shotgun sequence.
ACCESSION   DATIMD010000192 DATIMD010000000
VERSION     DATIMD010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2667177"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..356)
                     /locus_tag="VLI40_04325"
     CDS             complement(<1..356)
                     /locus_tag="VLI40_04325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HSU96430.1"
                     /translation="MTQTATGRPGKIVCVGRNYSEHAKELGNAVPKEPLLFLKPPSSV
                     IHEGESIVLPPQSNQVEFEGEIAVVVGSRLSHATATAAAKAIRGICALNDVTARDLQK
                     SDGQWTRAKGFDTFCA"
     gene            complement(362..>1941)
                     /locus_tag="VLI40_04330"
     CDS             complement(362..>1941)
                     /locus_tag="VLI40_04330"
                     /inference="COORDINATES: protein motif:HMM:NF024703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helicase C-terminal domain-containing protein"
                     /protein_id="HSU96431.1"
                     /translation="HFQDCFLFKARREAAQADVVVVNHHLLMSDVAVRRAAGNWEDAA
                     VIPPYTRLVIDEGHHLEDAASAHLGVTTSRRTLQRLFNRLDRRGRGLVTTLVERLSAS
                     RDLLGTASLDVVTQRIVPAVRASREKSDLVFDLLLAVLQSDGAPVMRMNEDFSQHPVW
                     KGGLHIALTDLLRELRVLGESLTLVSDRLQGGDRRDDTLVLLVNELRAVARRLDAAAD
                     GLLLALRPPATVEPMVRWLEVKGREGNVAVTAVPLDLAPILRDDLFTRVKTAVVTSAT
                     LGTEGDFAFVARRFGLDGSTISPVTAAFASPFDYQAQALLIVPTDVPAPNEDAARHFS
                     AVVRIIADVARASGGGMFVLFTSHRDVRAAAESLRRSDLADEFTLLVHGEDGRDALLQ
                     RFRNSGNAILLGTSSYWEGVDVPGDALRALVIARLPFRVPSEPVTAAQCEAITARGGD
                     AFGEYMLPHASLRLKQGFGRLIRTGTDRGAIIIADPRVITKRYGRELLRDLPPARRMS
                     GAWSALERQLQRFYGKT"
BASE COUNT          364 a          634 c          607 g          336 t
ORIGIN      
        1 atcgcacaga aagtgtcgaa gcccttggcg cgggtccact ggccgtcgct cttctgcagg
       61 tcgcgggctg taacgtcgtt gagggcacaa atgccgcgga ttgccttcgc agcggcggtg
      121 gcggtggcat gagacagtct cgatcccacc accacggcga tctcaccctc gaactccacc
      181 tgattggact gtggcggcag gacgatcgac tcgccctcat ggatcacgct ggagggtggc
      241 ttcagaaaaa gaaggggctc cttggggacc gcgttgccga gctccttcgc atgttcggaa
      301 taatttcggc ccacgcacac gatcttgccg ggccgtccgg ttgcagtttg ggtcataccg
      361 ttcaggtctt gccgtagaag cgttgaagtt gacgctcaag cgcactccac gctccactca
      421 tgcgcctggc ggggggaagg tcgcgcagaa gttcgcggcc atatctcttg gtgattacgc
      481 gcggatccgc gataatgatg gcgccgcggt ccgtgccggt gcgtatcaac ctgccaaagc
      541 cctgcttgag acgcagcgat gcatggggca gcatgtattc gccgaatgca tcaccgccgc
      601 gcgcggtgat tgcctcgcat tgcgccgccg tcaccggctc cgacggaact ctgaatggca
      661 gccgcgcgat taccagcgcg cgcagcgcgt cgcccggcac gtcgacgcct tcccagtacg
      721 acgaggtgcc aagcagtatc gcgtttccgg aattgcgaaa gcgctgcagc agcgcatcgc
      781 gcccatcctc tccatgaacg aggagagtga attcatccgc gagatcgctt cgccgaagtg
      841 actcggcggc agcgcgaaca tcgcgatggc tcgtgaacaa cacgaacatt ccgccgcccg
      901 atgcgcgcgc aacatcggcg atgatgcgca cgacagcgct gaagtgccga gccgcatctt
      961 cgttcggcgc gggaacgtcg gtcggaacga tgagcagcgc ctgtgcctga taatcgaacg
     1021 gcgacgcgaa cgctgctgtc accggtgata tcgtgctgcc gtcgagtcca aaccgacgcg
     1081 caacgaacgc gaagtcgcct tcggtgccga gtgtcgcgct cgtcaccacc gcggtcttca
     1141 cgcgcgtaaa gagatcgtcg cgcagaatcg gcgcgaggtc cagtggcacc gccgtcactg
     1201 cgacgttgcc ttcccgtccc ttcacttcca gccagcgcac catcggctcg actgttgcgg
     1261 gtgggcgcag tgcgagcagc aatccgtccg ccgccgcgtc gagtctgcgc gcgacggcgc
     1321 gcagttcgtt gacgagcagc accagcgtat catcgcgccg gtcgccgccc tgcaaccggt
     1381 cgctgaccag cgtgagactc tcgcccagca cgcgcagctc gcgcaacaga tccgtgagcg
     1441 cgatgtgcag gccgcccttc cacaccggat gttgcgagaa atcctcgttc atgcgcatca
     1501 ccggcgcacc gtcgctctgc agaacggcga gcaacaggtc gaacaccaga tcgctcttct
     1561 cgcgcgacgc gcgcacggcg ggcacgatgc gctgagtcac gacatcgaga ctggcggtgc
     1621 cgagcagatc gcgcgatgcc gaaagtcgct cgaccagcgt cgtgacaagt ccgcgaccgc
     1681 gacgatcgag cctgttgaag agtcgttgca gcgtacggcg cgacgtcgtg acaccaaggt
     1741 gcgccgatgc agcgtcttcg agatgatgtc cttcgtctat gacgagccgg gtgtacggtg
     1801 gaatcaccgc agcgtcttcc cagttgccgg cggcgcgacg cactgcgacg tccgacatca
     1861 gcagatgatg attcaccacg acgacgtcgg cctgagcagc ctcgcgccgc gccttgaaca
     1921 ggaagcaatc ctgaaaatgc g
//
LOCUS       DATIMD010000193         2484 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3245967, whole genome shotgun sequence.
ACCESSION   DATIMD010000193 DATIMD010000000
VERSION     DATIMD010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2484
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3245967"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1214)
                     /locus_tag="VLI40_04335"
     CDS             complement(<1..1214)
                     /locus_tag="VLI40_04335"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSU96432.1"
                     /translation="MLLADPENSTAGTAPLHYLDAISLGKIVQIREQLLKAQATGMRV
                     FRFESGDPSFSVATPVLDAVDAAARAGKTHYIPNNGIPQLRDALASKVRDRNHLAGVT
                     SDDVFVTNGAMHALFVTFGALLLPGDEVIVPDPMWTEVVENIRMAGGVSVGVELSAAD
                     DFEYRTDRIEAAITPRTRAIFINTPHNPTGAVLSVDRLKEIVELARANNLWIISDEAY
                     EDVLYEPWTHTSIGSLAGDYADRVVSIFSFSKSHAMSGLRVGYIVTRSPLMHDRIPKL
                     LRCSINGVNSLAQWAALAAVNGPADHLRAMRAEYAVRRDIMLGALSGIPGARVFAARG
                     AFYAWVELDDSALARLGVPDAAALSDRLAEAGIGSAPGDAFGETCTNAIRFAFSCDTA
                     MVREGSVVLRAAL"
     gene            1565..2314
                     /locus_tag="VLI40_04340"
     CDS             1565..2314
                     /locus_tag="VLI40_04340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSU96433.1"
                     /translation="MQRLINAWVWTETVLLTLIGFIYVSLVWLATAPFDPGRYAAGRA
                     FRHIAVAGTWLNPYWHFHTSGVAILDPRRPYVVVANHESYADIFLMSHLRWEMKWLSK
                     DTIFRIPVMGWMMRMAGDIPINRGSRGSAQQALDACRDRLAKRVSVMIFPEGTRSRGD
                     DLLPFKDGAFQLAISTGTPILPVAIAGTRYAMAKGSFSFRRANAMCRVLEPIETRGMS
                     AADLPALRDMTRQRISDARHQLQRELGGEQQ"
BASE COUNT          458 a          767 c          801 g          458 t
ORIGIN      
        1 agtgccgcgc gaagcacgac gcttccctcg cgcaccatcg ccgtatcgca gctgaacgca
       61 aagcggatcg cattggtaca tgtctcaccg aacgcgtcac cgggcgcact cccgattcca
      121 gcctctgcga gccgatccga cagagcggcc gcgtcgggaa cgccgagacg tgcaagggcg
      181 gagtcatcga gctcgaccca ggcgtagaac gcaccgcgcg cggcgaacac tctggcgccc
      241 ggaatccccg acagcgcgcc aagcattatg tcgcgacgta ccgcatattc cgcgcgcatc
      301 gcgcggaggt gatccgctgg accgttcacg gcggccaggg cggcccactg cgcgaggctg
      361 ttgacgccgt tgatgctgca ccggagcagc ttcggtatcc ggtcgtgcat cagtggagag
      421 cgcgtcacga tgtagccgac gcgcaatccg ctcatcgcat gcgatttgga gaacgagaag
      481 atgctgacga cgcgatcggc gtaatcgccc gcgagcgacc cgatcgacgt gtgggtccac
      541 ggctcataga ggacgtcctc gtacgcttcg tcggagatga tccagaggtt attggctcgc
      601 gcgagctcga cgatctcctt gagacggtcg acggagagca ccgctccggt ggggttgtgc
      661 ggtgtgttga tgaagatcgc gcgcgtgcgc ggagtgatcg cggcctcgat gcggtcggtg
      721 cggtactcga agtcatcggc cgcactcagc tccacgccaa cggagacgcc gccagccatg
      781 cgaatgttct cgaccacctc ggtccacatg ggatccggca cgatcacctc gtcgccggga
      841 aggagaagcg cgccgaaggt gacaaagagc gcgtgcattg ccccgttggt cacgaacacg
      901 tcgtcgctcg tcacaccggc gaggtgattg cggtcgcgta ccttggacgc cagggcgtcg
      961 cggagctgag gtatcccgtt attcgggatg tagtgggtct tgcccgctcg ggccgcggcg
     1021 tcaactgcgt cgagcactgg cgtggcgacg ctgaagctcg gatcgccgga ctcgaagcgg
     1081 aacacgcgca tgcctgtggc ctgggccttg agcagctgct cgcggatctg aacgatcttt
     1141 ccgagcgaaa tcgcgtcgag atagtgaagc ggtgcggtgc ctgcagtcga gttttccggg
     1201 tcagctagta acatctatcg gttttcctgg tcggtggtgt ggtgagtcga tggcaaaaaa
     1261 aagcccgcct gacgaaaagt ctggcgggca cggtggaaat gaaactcgaa cggcttcacg
     1321 catgcgtcaa ccagatcccc ggagaggaga gtggcttgca cttgcttggc gacgtgaagc
     1381 gagaaatggt catcttctgt tggtggcgtt atcgtccgca catacgctat cggccgccgc
     1441 acagattgtc aaccgcagtg ggaatatctt cacaagttct gtccagccgc cagcgcagcc
     1501 ggctccgtcg aggcgacttt atggcagtct tacggcgacg cggtcgcgct ggcaaatttt
     1561 gcggatgcaa cgtttgatca acgcctgggt gtggacggag acggtccttc tcacactgat
     1621 cggattcatc tacgtctcgc tcgtctggct ggccacggcg ccgttcgacc cggggcggta
     1681 cgctgccggc cgcgcgttcc gccatatcgc cgtcgccggg acgtggctca atccgtactg
     1741 gcacttccac acgagcggag tcgccatact ggatccgcga cggccctatg tagtcgttgc
     1801 caaccatgag agctatgctg acatctttct gatgtcacat ctcaggtggg aaatgaagtg
     1861 gctgtccaag gacaccatct tcaggatccc ggtcatgggg tggatgatgc gaatggcggg
     1921 tgacattccg atcaaccgcg gcagtcgcgg cagcgcacag caggcgctcg atgcgtgccg
     1981 cgaccgcctg gcgaaaaggg tatcggtaat gatctttccc gaaggaacgc gctcacgcgg
     2041 cgacgatctg ctccccttca aggacggcgc gtttcagctc gccatatcga ccggaacgcc
     2101 gattttgccg gtcgcaatcg cggggacgcg ctatgcgatg gccaagggct ccttcagctt
     2161 tcgccgcgcc aacgcgatgt gcagggtgct ggagccgatc gaaacgcgcg gcatgagcgc
     2221 tgcggatctc cccgcgctcc gcgacatgac acggcagcgc atttcggatg cgcgccatca
     2281 actccagcgc gagctcggcg gcgaacagca ataaaacggc gcgcggggca tcgtcccgcg
     2341 cgccgctttt ccttgcgctg tcagagatca gtacccgacc gcgcctccgt tcgaacgcgg
     2401 ctcgtacact ccgacccagc gtccatcggg accgcgcatg accgcgttga cgttcgtcag
     2461 gccgcttacg gcgtggagct tgta
//
LOCUS       DATIMD010000194         3690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_937120, whole genome shotgun sequence.
ACCESSION   DATIMD010000194 DATIMD010000000
VERSION     DATIMD010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3690
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_937120"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..774
                     /locus_tag="VLI40_04345"
     CDS             <1..774
                     /locus_tag="VLI40_04345"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSU96434.1"
                     /translation="VKLSATMYLPAGYTPSQGRLPFFFWAYPREFLSAAAASEVRGSP
                     YEFKRPSLPRDRQLLLLAAGYGVLDGPSMPIVAKNGKEPNDSYVEQLVASAKAAIDAI
                     DSLGVGDRNRVAVGGHSYGAFMTANLLAHSTLFRAGVAESGAYNRTLTPFGFQAEPRT
                     FWQAEDIYSTMSPFYYADKIKTPILLIHGVNDDNDGTFPIQSERMFAAIKGNGGTVRY
                     VQLPLEPHGYTSRESLRHVMWETVTWLDRYVKNPTEKTN"
     gene            951..2060
                     /locus_tag="VLI40_04350"
     CDS             951..2060
                     /locus_tag="VLI40_04350"
                     /inference="COORDINATES: protein motif:HMM:NF019352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper oxidase"
                     /protein_id="HSU96435.1"
                     /translation="MSRSPVHVETIEDAVNAVVSRRESRRSFLRNGAVAAVTGTLVAA
                     CKPAAAAERSPEPVTKAPPAASSSVAFGTDDVSAASIASADAMDKMHEAGIKAFPAKS
                     KGRGNQLLAPRIEHGVKVFDLVAKRMQWETEPGKVTEAWAYNGMVPGPIMRVRAGERV
                     RVNIKNELPESTSIHFHGVELANSQDGVPFITQPPIKPGQSYTYDFVPPNHGSHMYHS
                     HHNSTKQVSLGLLGAFIVEPRDSSEEPHADVDHVLILNDGLNGFTLNGKGFPATEPIV
                     ARLGQTVRIRFMNEGMMIHPMHLHGMHMTVIAKDGWTQPQPWKCDTLNVAPGERWDVL
                     VKCNNPGTWAFHCHILPHAESEHGMFGMVTALIVK"
     gene            2108..3622
                     /locus_tag="VLI40_04355"
     CDS             2108..3622
                     /locus_tag="VLI40_04355"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HSU96436.1"
                     /translation="MMNESQGSAGGATSVSTSEFLSRPPSAGMYEKILEVAADAIVTI
                     NEAQEIVHFNRGAEQIFGYGKDEVLGTNLNKLLPPQFRASHAGYVVAFGESSETARLM
                     GHRREVFGLRKDGTEFPAEASILKLDAPDGRRLYTALVRDVTDRKRMETHQRFLAEVG
                     IALSRSLDYDATIASVARLPVPTLADACIIEVVDELGELHRATHGSTELLSGSAPPTA
                     TRQDLPLIARGQTVGALTLLRAGASRANDPGDAIITGNFAARAALAIDNARLYQHAQR
                     ATAARDEILGVVSHDLRNPLSAIAMCSRVLVDTPPSDADARRDLARTIHESTTWMSRM
                     IQDLLDVSAIEAGVLSVVSASEDVGAIVTRAAGLFTRRAADNGIAIVVTVEEPLARVS
                     ADAERMVQAVANLIGNAVKFTPAGGRITIEACSRGEVVEISVTDTGRGIAETDVPFIF
                     DRFWHTRGAAAGTGLGLAIARGIVEAHGGTIAVSSRIGEGSCFTVSVPREGAAR"
BASE COUNT          746 a         1047 c         1188 g          709 t
ORIGIN      
        1 gtcaagctct cggcgacgat gtatctgccg gccggctata caccatcaca gggacgtttg
       61 ccgttcttct tctgggcata tccgcgcgaa ttcctctctg ctgctgccgc ctcggaagtg
      121 cgcggatcgc cgtacgagtt caagcggccg tcactgccac gtgacaggca gctgttgttg
      181 cttgccgcag gttatggcgt tctcgacggg ccgtcgatgc cgatcgttgc gaagaacggc
      241 aaggagccga acgacagtta tgtcgagcaa ctcgtggcga gtgcaaaggc ggcgatcgac
      301 gcgatagatt cgctcggggt tggtgatcgc aaccgtgtag cagtgggtgg ccactcatac
      361 ggtgcgttca tgacagcgaa tctgctggca cactcgacgc tgttccgcgc gggtgttgca
      421 gagagtggtg cgtataacag aacgctcact ccgttcggct tccaggcgga gccgcgtacg
      481 ttctggcagg cggaagatat ctacagcacg atgtcgccat tttattatgc cgacaagatc
      541 aagacgccga tcctgttgat ccacggcgtg aacgacgaca acgacggaac gtttccgatt
      601 cagtcggaga gaatgttcgc cgcgatcaag gggaatggtg gcacggtgcg gtatgtgcaa
      661 cttccactcg agccacatgg ctatacttcg cgcgagagcc tgcggcatgt gatgtgggag
      721 accgttacgt ggcttgacag gtacgtcaag aatccgacgg aaaagaccaa ctgagccaac
      781 tcgggaatgc gctcgctgcg atagcatccg gctatggcag cgagcgcatt cttcatttcg
      841 gcaatctgta ggggtttccc ctagagactt tccagttttt ccccgactga acgattgggt
      901 gatcgcagat aggttgcagg agatcctcca caacctactg gacgaacatc gtgagcagat
      961 cgccggttca tgtcgagacg atagaagacg ctgtaaacgc tgttgtatcg cgacgtgagt
     1021 cgcggcgttc gttccttcgg aatggcgccg ttgccgcggt caccgggacg ctggtggccg
     1081 cgtgcaagcc tgctgctgca gccgagcgat cgcccgaacc ggtcacgaag gcgccgccgg
     1141 ccgcatcttc ttccgtcgcg ttcggtaccg acgacgtgag tgctgcgtcg atcgcctccg
     1201 cggatgcgat ggacaagatg cacgaggccg gtatcaaggc attcccggcg aagagcaagg
     1261 ggcgaggcaa tcaacttctc gcaccacgta tcgagcacgg agtgaaggta ttcgacctcg
     1321 tcgcaaagcg gatgcagtgg gagactgagc cgggcaaggt taccgaggcg tgggcataca
     1381 acggaatggt tcccggtccg atcatgcgcg ttcgcgccgg tgagcgcgtt cgggtcaaca
     1441 tcaagaatga attgccggaa tccacatcca tccactttca cggtgtggag ctcgcaaatt
     1501 cccaggatgg agtgccgttc atcacgcagc ctcccatcaa gccagggcag agctacacgt
     1561 acgatttcgt tccgccgaat cacggctcgc acatgtatca ctcgcaccac aactccacca
     1621 aacaggtcag ccttggcctg ctcggcgcgt tcatcgtgga gccccgcgac agctcggaag
     1681 agccgcacgc ggatgtcgac cacgttctga ttctgaatga cggactgaac ggcttcaccc
     1741 tcaacgggaa gggatttccg gcgaccgagc cgatcgtcgc gagacttggc cagacggtac
     1801 gcatccgttt catgaacgaa gggatgatga tccatccgat gcatctgcac ggcatgcaca
     1861 tgaccgtcat cgcgaaggac ggctggacac agcctcagcc atggaaatgt gatacgctca
     1921 acgtggcgcc gggcgagcgc tgggacgtcc ttgtgaagtg taacaatccc ggcacctggg
     1981 cgttccactg tcacattctc ccgcacgcgg agtcggagca cggaatgttc gggatggtga
     2041 ccgccctgat agtgaagtag agcgcgggcc ggcattactc tccggcggtc gtggtagttt
     2101 tatagccatg atgaacgaga gtcagggcag cgctggcggt gcgacttcgg tttccacgtc
     2161 cgagtttctg tcgcggccgc catcggccgg catgtacgaa aagattctgg aggtcgcggc
     2221 ggatgctatc gtcacgatca acgaggcaca ggagatagtg catttcaatc gcggtgccga
     2281 gcagattttc ggatatggaa aggatgaggt actgggcacc aacctgaaca agctgctgcc
     2341 gccacagttc cgcgcgagcc acgccggata tgtcgtcgca ttcggcgagt cttccgagac
     2401 cgcgaggctc atgggccatc ggcgtgaagt gttcgggctc aggaaggacg gaacggagtt
     2461 tccggccgag gcctcgattc tgaaactgga cgctccagat ggtcgccggt tgtataccgc
     2521 tctggtgcgc gacgtgaccg atcgcaaacg gatggaaacg caccagcggt tcctggccga
     2581 ggtcgggatc gcgctcagtc gctcgctcga ttacgacgcg acaattgcat cggtggctcg
     2641 tttgcccgta ccgacgcttg ccgacgcgtg catcatcgag gttgtcgacg agctggggga
     2701 gcttcatcgg gcgacgcacg ggagcacgga gttgctgagc ggatctgcac ctccgactgc
     2761 gactcggcag gacctgcccc tcattgcgcg cggtcagaca gttggtgcat tgacgttgct
     2821 ccgggcgggc gcgtcgcgag cgaacgatcc cggtgacgcg ataattacag gcaactttgc
     2881 agcgcgtgct gcgctcgcga tagataacgc gcgactgtat cagcatgcac agcgcgcgac
     2941 ggccgcgcgg gacgagatac tcggcgtagt atcgcacgac ctgagaaatc cactgagcgc
     3001 gatcgcgatg tgttcgcggg tgcttgtgga cacgccacct tccgacgccg atgcgcggcg
     3061 cgacctggcc aggaccatcc acgaatcgac gacgtggatg tcacgcatga ttcaggatct
     3121 gctcgacgta tctgcgattg aggcgggcgt gttatccgtg gtctccgcaa gtgaggatgt
     3181 cggcgcgata gtgacgcgcg ctgccgggct cttcacgcgg cgggcggcgg acaacggtat
     3241 cgccatcgtt gtcacggtgg aagagccact cgcgcgtgtg tccgcggatg cggagcgaat
     3301 ggtgcaggcc gttgcgaatc tcataggcaa cgcggtcaag ttcactcccg ccggagggcg
     3361 cattacaatc gaagcttgct cgcgtggcga agtcgtcgag atctcagtga cggacacggg
     3421 acgcggcatc gcggagacgg acgttccatt cattttcgat cgattctggc atacgcgcgg
     3481 cgccgcggcc ggaacaggat tgggattggc gattgccagg ggaatcgtcg aggcacatgg
     3541 gggaaccatc gcggtcagca gcaggattgg agaaggcagt tgtttcacgg tcagcgtgcc
     3601 gcgcgagggc gcggcacgct gaccgagacg aaagttccag ggcattcagg tgcaaaccca
     3661 ccagcagcag gaggcgacga tgacagccca
//
LOCUS       DATIMD010000195         2671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_652364, whole genome shotgun sequence.
ACCESSION   DATIMD010000195 DATIMD010000000
VERSION     DATIMD010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2671
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_652364"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VLI40_04360"
     CDS             <1..414
                     /locus_tag="VLI40_04360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96437.1"
                     /translation="TVRVSAPRMLLAKGFLRSVFEIFERHRTSVDVVSTSEVSVSVTL
                     DDAARLDELLIDLRMLGDVSIERDRAVVAIVGSGIGDSGDCMGRALQALGDVHVHMVS
                     LSASGINLTVVVDGEAMHDAMRSLHREFFPHKEMS"
     gene            411..1103
                     /locus_tag="VLI40_04365"
     CDS             411..1103
                     /locus_tag="VLI40_04365"
                     /inference="COORDINATES: protein motif:HMM:NF017024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate reductase C-terminal
                     domain-containing protein"
                     /protein_id="HSU96438.1"
                     /translation="MSALRVAIIGPGKMGTAVADLARASGIDVVAMLGAGSVIGVESL
                     AGADVAIEFTEPAAAAANARACILAGCPVVVGTTGWYQELPELSRLVSGKGGSMVWSP
                     NFSLGVHAVARVMRRAGEIIANIPTFDAVLVETHHAEKKDAPSGTARMLQERFAEGSG
                     RQIPITSVRVGSVPGTHALILDGRFEQIVISHEARDRRVFAEGALVAARWLIGRTGVF
                     TLDDVLSDEEVR"
     gene            1100..1999
                     /gene="dapA"
                     /locus_tag="VLI40_04370"
     CDS             1100..1999
                     /gene="dapA"
                     /locus_tag="VLI40_04370"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HSU96439.1"
                     /translation="MKSTVPMLRGAGTAIVTPFDATGEIDQSALRRFVAWQVEEGIDY
                     IVPCGSTGEAATMSAEEQRRVVEITVEVVAGRIPVIAGAGSNDTARALANSRMMRDAG
                     ATHLLHVSPSYNKPPQRGIVAHFRAIADTVDIPIVVYNVPGRTASNVTAETTLELADH
                     PNIVAVKEASGNLAQITQILRHRPHDFSVLSGDDALTLAVMAAGGDGVTSVTSNATPA
                     LVTQLCAAAHRGDYDDARAIDSRLAMWTHAAFIESNPIPVKAALAMMKMMGDNLRLPL
                     VPLAGQHHATVRAALVSVGALPA"
     gene            1996..>2671
                     /locus_tag="VLI40_04375"
     CDS             1996..>2671
                     /locus_tag="VLI40_04375"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HSU96440.1"
                     /translation="MTPASNDGHEVLARRIEELSSVRGTPPPEARPVVDELLTLLETG
                     VVRAAERNAAGDWSAVPWVKLGILLGFRVGTMVDMSLTQQGDAGITFSFLDKDTYPPR
                     TLQVSDGIRVVPGGSSIRRGAFLARGVVCMPPSYVNVGAYVGAGTMIDSHALVGSCAQ
                     VGERVHLSAAAQLGGVLEPINASPVVIEDDVVVGGNCGVYEGTVVRTRAVLGAGVILT
                     RSTPVFD"
BASE COUNT          461 a          785 c          885 g          540 t
ORIGIN      
        1 accgtgaggg tgagcgcacc gcgcatgctg ctcgcaaagg gatttctccg gagcgtattc
       61 gagatcttcg agcggcatcg cacctcggtt gacgtcgtct ccacttccga agtgtcggtg
      121 tcggtgactc tcgacgacgc ggcacgattg gatgaattgc tcatcgatct ccggatgctc
      181 ggcgacgtgt ccatcgagcg ggaccgggcc gtcgttgcga tcgtgggatc cggcatcggc
      241 gacagtggcg actgcatggg gcgcgcgctg caggcgctcg gcgatgtgca tgttcacatg
      301 gtgtcactga gcgccagcgg catcaatctc acagtggtgg tcgatggcga ggcgatgcat
      361 gatgccatgc gttcgctgca ccgcgagttc tttccgcaca aggagatgtc atgagtgcgc
      421 ttcgagtggc gatcataggt ccgggcaaga tgggcacggc agtcgccgac ctcgcgcgcg
      481 cgagcggaat cgatgtcgtt gcaatgcttg gtgccggcag cgtcatcggc gtcgaatcac
      541 tcgcaggcgc ggacgttgcc atcgagttca ctgagccggc cgcggccgcc gcgaatgcgc
      601 gggcatgtat tctcgctgga tgtcccgtcg tggttggcac gaccggttgg tatcaggagt
      661 tgccggagct ctcgcgtctg gtgtccggga agggtgggtc gatggtctgg tcgccgaatt
      721 tctcgctcgg tgtgcatgcc gttgcgcgcg tgatgcgtcg cgccggcgag atcatcgcga
      781 acatccccac gtttgacgcg gtgctcgttg agacgcatca cgcggagaag aaggatgcac
      841 catcaggcac ggcgcgcatg ctgcaggaga gattcgcgga agggtcgggc cggcagatac
      901 cgattacgag cgtccgggtc ggctcggtac ccgggaccca cgcacttatt ctcgacggtc
      961 gcttcgagca gatagtgatc tctcatgaag cacgtgacag gcgagtattc gccgagggcg
     1021 cgctcgtcgc ggccagatgg ttgattggac ggaccggcgt gttcacgctg gacgatgtgt
     1081 tatccgatga ggaggttcga tgaagtcgac ggttccgatg ctgcgtggcg ctggaacggc
     1141 aatagttaca ccgttcgatg caaccggcga gatcgaccag agcgcattgc ggcgcttcgt
     1201 tgcgtggcag gtggaggagg gaatcgacta catcgtcccc tgcggctcta ccggtgaggc
     1261 tgcgacgatg tccgcggagg agcaacggcg cgtcgtcgag atcacggtag aggtcgtagc
     1321 cggacgcatt ccggtgattg ccggcgccgg ctcgaacgat actgcccgcg cattggccaa
     1381 ctcgcgaatg atgcgcgatg cgggcgcgac ccatctgctg cacgtttcgc cgtcgtacaa
     1441 caagccgcct cagcgcggga tcgtggcgca tttccgcgcg atcgccgata cggtggacat
     1501 tccgatcgtc gtctataacg tgcccggacg caccgcgagc aatgttaccg ccgagacgac
     1561 gctcgagctt gctgatcatc ccaacatcgt tgcggtgaag gaggcgtccg gaaatctcgc
     1621 acagatcacg cagatacttc gccatcgtcc gcacgatttc tcggtactgt ccggggatga
     1681 cgcgcttact ctcgccgtaa tggcggccgg cggcgatggt gtgacgtcgg taacttccaa
     1741 tgcgacgcct gcacttgtca cgcagctgtg cgcagctgca catcggggcg attacgatga
     1801 tgcgcgcgcg atcgacagtc gccttgccat gtggacgcat gcggcgttta tcgaatcgaa
     1861 tccgattccc gtcaaggctg cactcgcgat gatgaagatg atgggcgaca acctgcgact
     1921 tcctctcgtc ccgctcgctg gacagcatca cgcaaccgtg cgcgccgctc tcgtctccgt
     1981 cggggcatta cctgcatgac gcctgcgtcg aacgatggac atgaagtgtt ggcccgcaga
     2041 attgaggaat tatcgtcggt ccgtggcacg ccgccacccg aggcgcgccc ggtagtcgat
     2101 gagctgctga ccctgctcga gaccggagtc gtgcgtgccg ctgagcgcaa tgccgctgga
     2161 gactggagcg ccgttccctg ggtcaagctt ggcattctgc tcggctttcg cgtcggcacg
     2221 atggtcgaca tgtcgctcac gcagcagggt gatgccggta tcacattttc attcctcgac
     2281 aaggacacct acccgccacg cactcttcag gtgagcgatg ggattcgtgt agtgcccggt
     2341 ggttcgtcga ttcgacgggg cgcattcctc gcgcgcggcg tcgtatgcat gcctccgagc
     2401 tacgtcaacg ttggtgcgta cgtcggtgcc ggcaccatga tcgactcgca tgcactggtc
     2461 gggtcctgcg cacaggtcgg tgagcgcgtc catctcagcg ctgcagcaca gcttggcggc
     2521 gtgctcgaac caatcaacgc atcgcccgtc gtcatcgaag atgatgtagt ggtcggtgga
     2581 aactgcggcg tttacgaagg tacggtcgtt cggaccaggg ctgtgctcgg agccggcgtc
     2641 attctcacgc gcagcacacc agtgttcgat a
//
LOCUS       DATIMD010000196         1684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1229996, whole genome shotgun sequence.
ACCESSION   DATIMD010000196 DATIMD010000000
VERSION     DATIMD010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1229996"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..786
                     /locus_tag="VLI40_04380"
     CDS             <1..786
                     /locus_tag="VLI40_04380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDIG domain-containing protein"
                     /protein_id="HSU96441.1"
                     /translation="PMRREVARMALEKLVADGRIHPGRIEEVVTKAREEVDKALIETG
                     ERAAYESGVHGLHPELLKLIGRMKWRTSYGQNILNHSKEVAWLAGIMAAELGLDVPMA
                     RRGALLHDVGKVLTHEHEGTHVQLGVEMATKYGEHPLVVNAIAAHHDDVPHESEISVL
                     VQAADAISGARPGARRESFETYVKRLEGIERIASDYRGVEKVFAIQAGREVRVIVTPD
                     VIDDPRMETLSEEIALRIERELQYPGQIKVVLIRETRAVGIAR"
     gene            776..1663
                     /locus_tag="VLI40_04385"
     CDS             776..1663
                     /locus_tag="VLI40_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrofolate dehydrogenase/cyclohydrolase
                     catalytic domain-containing protein"
                     /protein_id="HSU96442.1"
                     /translation="MPAELIDGTAIAARIRGEVSAEVATLKATGTVPKLTVVLIGDDP
                     ASAVYVAGKARACIEVGMEENTIRLPASTSQHELMELLDGLNADSSVHGILVQSPFPP
                     QIDASAVIRRIDPSKDVDGFHPVNVGKLFAGDRDGFVPCTPAGIQELLRQSDVTTHGL
                     HCVVVGRSNIVGKPMAALMVQDGPTANCTVTICHRYTRDLGSFTRRADILITAVGRPG
                     LITADMVKPGAAVLDVGITRIPDATRKSGTRLVGDVDFPAVREVAGLITPVPGGVGPM
                     TIAMLLRNTVRAAQRLAAA"
BASE COUNT          322 a          498 c          567 g          297 t
ORIGIN      
        1 ccgatgcggc gtgaggttgc acgcatggct ctcgaaaagc tggtggcgga tggacggatt
       61 catcccgggc gcatcgagga agtggtaacg aaggcgcgcg aagaagtcga caaggcgttg
      121 atcgagaccg gcgagcgtgc cgcatacgag agcggtgtgc atggattgca tcctgagctg
      181 ctcaagctca tcggccgcat gaagtggcgc acgagttacg ggcagaacat cctgaaccac
      241 tccaaggaag ttgcctggct cgccggaatc atggctgcgg agctgggact cgacgttccg
      301 atggcgcgcc gcggcgcgct gttgcacgac gtgggcaagg tgctcacgca tgagcacgag
      361 ggcactcacg tgcagctggg cgtcgagatg gcgaccaagt acggcgagca tccgctcgtc
      421 gtgaacgcga ttgcggccca tcacgacgac gtcccgcacg agagcgagat atcggtactc
      481 gtgcaggctg ccgacgcgat aagcggagcg cgacccggtg cccgccgtga atcattcgag
      541 acatatgtga agcgactcga agggatcgag cgcatcgcgt cggactatcg cggcgtcgag
      601 aaggtatttg cgatccaggc cggtcgcgag gttcgcgtca tcgtgactcc cgatgtgatc
      661 gatgatcctc gcatggagac gctctcggag gagatcgcgc tcaggatcga gcgtgagtta
      721 caatatccgg gtcagatcaa ggtcgtgctg attcgtgaga cgagggccgt cggaattgcc
      781 cgctgagctg atcgacggaa ctgctatcgc cgcgcgaatc cgcggcgagg tgagcgcgga
      841 agtggcgacg ctcaaggcga cgggcaccgt gccgaagctg acagtcgtcc tgatcggcga
      901 cgatcctgcg agcgccgtgt acgtcgccgg caaggcgcgt gcgtgcatcg aggtcggcat
      961 ggaggaaaac acgatccggc tgccggcgtc cacgtcgcag cacgagctga tggagttgct
     1021 cgatggcctg aacgccgact cttcagttca cggtattctg gtgcagtcgc cgttcccgcc
     1081 gcagatagac gccagcgcgg tgatccgccg gatagatcca tccaaggacg tcgacggttt
     1141 tcatcctgtg aatgtcggaa agctctttgc cggcgaccgc gatggattcg tcccgtgcac
     1201 tcccgcagga atccaggagc tgctgcgtca gtcagatgtc acgacgcacg ggctgcattg
     1261 cgtcgttgtg ggacggagca acatcgtcgg caagccgatg gctgcgctca tggtgcagga
     1321 cggtccgacg gcaaactgta ccgtcacgat ctgtcaccgt tacacgcgcg acctcggctc
     1381 gttcactcgc cgcgccgaca tactcatcac cgctgttggg cgtccgggcc tcattaccgc
     1441 cgacatggta aagccgggcg ccgctgtgct cgacgttggc ataacccgta ttcccgacgc
     1501 aactcgcaag agcggcacgc gactcgtcgg cgacgtcgat ttcccggcgg tacgagaagt
     1561 cgcgggactc attacacccg tgcccggtgg tgttggaccc atgaccatag cgatgttgct
     1621 gcgcaacacg gttcgcgccg cgcaacgcct ggcggcggcg tgaggctcgc acggtgagac
     1681 ggtc
//
LOCUS       DATIMD010000197         3270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5560816, whole genome shotgun sequence.
ACCESSION   DATIMD010000197 DATIMD010000000
VERSION     DATIMD010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3270
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5560816"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1068)
                     /gene="wecB"
                     /locus_tag="VLI40_04390"
     CDS             complement(<1..1068)
                     /gene="wecB"
                     /locus_tag="VLI40_04390"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HSU96443.1"
                     /translation="MQPKKVLVVVGTRPEAIKLAPVIRCLQEHPQIVTEVCATGQHRE
                     LLAQALAQFELLPDHDLDVMTDNQTLAGLTSRMMDGMSTLLGRTKPSMVVVQGDTTSA
                     MTAALAAFYHRTAVVHVEAGLRTQDKYSPFPEEINRRIIGGVADLHFSPTIGSRENLL
                     REGVDDSQIHVTGNTAIDALLWTIARMNGKEECLPAIVGPALDTSTLAGKRLVLVTAH
                     RRENYDRGIENICRALTEIAGLPDAEIAFPVHYNPNIRNTVLEALGGRRNIHLLEPLG
                     YQSFSSLLNRAFLVLTDSGGVQEEAPSLGKPVLVMRDTTERPEGISAGNAILVGTSSA
                     KIRSVTMELWNDEQRRLRMACV"
     gene            complement(1073..2851)
                     /locus_tag="VLI40_04395"
     CDS             complement(1073..2851)
                     /locus_tag="VLI40_04395"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU96444.1"
                     /translation="MLAKLTMLMSARQRTQLVLLFLGMLAGAMMEMAGIGAIPAFAAL
                     VGSPDRVLNNGLVERYFGDLHSVPQSSLLLYAAGALLVLFIFKNTYLFLLLLAQSRFT
                     QRFQSRLAVRVLRAYLYAPYHLHLQRNPSELLRNANSEALEIIASVVMPGMVLTMELL
                     TVAAILTLLFLAEPAVSLFACILLGGTALVFMKTIRSRLSLYGEQIQFFRGKMVQSVH
                     ESLSSVKMTKVLGREDHFLKSFAAHTDGYSEANRFRQIATETPRLILEVTAIAGLLGV
                     AAVLTAAGKPPITVTVTLALLSIALVRTIPSVNRITSSVATLRYGHYALEAINKDLTE
                     LETQSLTIHGDALPMSFRESIRFDDVSYTYPGASKASLAHISLRIGRGSSVAIIGPTG
                     AGKTTLVDLLLGLLAPSDGCILVDEVNLTRAIASWQRSIGYVPQDIYLTDDSIRGNIA
                     LGIPAADIDPAAIDQALSAAQLDEFVRSLPAGLDTVVGERGVRLSGGQRQRIGIARAL
                     YHNPSVLIFDEATSSLDTATEELVIQAVDALRGSRTIIVIAHRLSTIRNCDYVFSLRD
                     GAVSSEGPVANFVDRADPIRTFLAAR"
     gene            complement(2872..>3270)
                     /locus_tag="VLI40_04400"
     CDS             complement(2872..>3270)
                     /locus_tag="VLI40_04400"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HSU96445.1"
                     /translation="PGTIRAVLRGERPVIRSNGTLVRDYLYVEDAAATYTLLAEHLAS
                     NSALRGEAFNFSNELRMSVSDMVQQILELMGKGTLFDMRCDAANEIQHQYLSAERAQR
                     VLGWAPMFSLEEGLKRTIAWYAAFLSQSNT"
BASE COUNT          724 a          949 c          935 g          662 t
ORIGIN      
        1 gacgcatgcc atgcgaaggc gccgctgctc atcattccaa agctccatgg tgaccgatcg
       61 gatctttgca gagctggtgc cgaccagtat ggcattgccg gcactgattc cctctggtcg
      121 ctccgtcgta tctcgcataa ctagtacggg cttacccaag gatggggctt cctcctgaac
      181 gccccccgag tccgtaagca caagaaacgc gcggttcagc agactcgaaa aggactgata
      241 tccgagcggc tcgagcagat ggatgtttct tctcccgccg agtgcttcga gaacggtgtt
      301 gcggatgttc ggattgtagt gaaccgggaa agcgatctct gcgtcgggga gtcccgcgat
      361 ctcggtcagc gcgcggcaga tgttttcgat tccgcgatca tagttctctc ggcgatgcgc
      421 ggttacaagt acgagtcgct tgcccgccaa cgtgctcgtg tccagagctg gtccaacgat
      481 cgccggtaag cactcctcct taccattcat gcgtgcgatg gtccacaaaa gcgcatcaat
      541 cgcggtattc ccagttacgt gtatctgcga atcgtccact ccctcccgca gaaggttttc
      601 gcgtgagcct atagtgggag aaaaatgaag atcagccaca ccaccgatga tccgtcgatt
      661 gatctcctcc gggaacggcg aatacttgtc ttgggtgcgc agccccgcct caacatgcac
      721 gacagctgtc cggtgataaa atgccgccag cgcggccgtc atcgcgctcg tcgtgtctcc
      781 ctgcaccact accatggaag gtttggtgcg gccgagcagc gtagacatgc cgtccatcat
      841 ccgggatgtc agcccagcca aggtttgatt gtccgtcatc acgtcaagat cgtgatccgg
      901 tagcaattcg aattgggcca atgcctgcgc gaggagctcg cgatgctgac cggtcgcaca
      961 gacttccgtc acgatctgtg gatgctcctg cagacagcga attacaggcg caagcttgat
     1021 cgcctcgggt cgggtcccaa ccactaccag aaccttcttc ggttgcaacc ggctagcgcg
     1081 cggccaagaa ggtacggatc ggatccgcgc gatcgacgaa gttcgcgacg ggtccctccg
     1141 aggagactgc gccatcgcgc aaggagaaca cgtagtcaca gttccgaatg gtcgacaatc
     1201 gatgtgcaat gacgatgatc gttcgacttc cgcgcagcgc atccaccgcc tggatcacga
     1261 gctcctctgt cgcggtgtca agcgatgatg tcgcctcatc gaaaatgagg acagagggat
     1321 tgtgatagag cgctcgggca attccaatgc gttgccgctg tccacccgaa agcctgaccc
     1381 cgcgctctcc gacgacggta tcgagtcccg caggaagcga tcgaacgaac tcatcgagtt
     1441 gagcggcgct caacgcctga tcgatggcgg caggatcaat gtccgctgca ggaattccca
     1501 aagcgatgtt cccgcggatg gaatcatctg tgagatagat gtcctggggc acgtatccta
     1561 tcgatcgctg ccatgaagcg atagctcgcg tcaggttgac ctcgtccacg agaatgcacc
     1621 catccgaagg agccagcagt ccaagaagga gatcgacaag agtcgtcttt ccggcgccgg
     1681 tagggccgat gatcgcaacg gagctgcccc gaccaatgcg caaggatata tgcgcaagag
     1741 aagccttgct ggcaccggga taagtgtagc tcacatcgtc gaatcggatg ctttctcgga
     1801 agctcatcgg aagagcgtcg ccgtgaatcg tgagggattg cgtctcgagc tcggtgagat
     1861 ccttgttgat tgcttcgagt gcgtagtgac cgtatctcag cgtcgcgacg gaagaggtga
     1921 tccgattcac ggatggtatc gtgcgcacca gggcgatact gagcaatgcc agtgtcactg
     1981 tgactgtgat aggtggtttg ccggcagccg tgagcactgc ggctaccccc aacaaccccg
     2041 caatcgccgt gacctcgaga atcagtcgcg gtgtttcggt cgcaatctgg cgaaagcgat
     2101 tggcttccga atagccgtcg gtgtgcgctg cgaaggactt gagaaagtga tcctcacgac
     2161 ccagcacctt tgtcattttg acgctgctca ggctttcgtg aaccgactgc accatcttgc
     2221 cacggaagaa ctgaatctgt tccccgtaca atgacaggcg actgcgaatc gttttcatga
     2281 acacaagcgc tgtgccgccc aggagaatgc aagcgaacag cgacacagcc ggttctgcga
     2341 gaaacagcag ggtgagtatc gcggcgaccg tgagcagctc catcgtgagg accattccgg
     2401 gcattacaac ggatgcaata atctcgagcg cctccgagtt tgcattgcga agaagctcgg
     2461 acggattccg ctggaggtgg aggtgatacg gcgcgtagag gtaagcacgg agcacacgca
     2521 cggccaatcg cgactggaaa cgctgtgtga accgtgactg ggcaagaagt aggagaaaca
     2581 aatacgtgtt tttaaatatg aacagaacga gcaacgcacc cgcggcgtac aggagcagac
     2641 tcgattgtgg cacactgtgc agatcgccga agtacctctc gaccaagccg ttgttcagta
     2701 cgcgatcggg gctgccgacg agcgccgcga acgcgggtat ggctccaatg cctgccatct
     2761 ccatcatggc accggccaac attccgagga aaaggagtac gagctgcgtg cgctggcgag
     2821 cgctcatcaa catcgtcagc ttcgcgagca tgcttttaaa agcaagatcg ctcacgtgtt
     2881 cgactgactc agaaaggccg cgtaccacgc tatcgttcgc ttcaagcctt cctccagtga
     2941 aaacattggc gcccagccaa gcacgcgttg cgcccgctct gcgctcaggt actggtgctg
     3001 tatctcgttc gcggcatcac agcgcatgtc aaacagcgtt cccttcccca ttagttcgag
     3061 tatttgctga accatatcgc ttacggacat tcgaagctca ttagagaaat tgaacgcctc
     3121 tccgcgcaac gccgaattgc tcgccaagtg ttccgcgagc agtgtgtaag tcgccgccgc
     3181 atcttccacg tacaggtagt cccgaacgag cgtgccattg gagcgaatca caggccgttc
     3241 cccacgcagc accgcgcgaa tggttcccgg
//
LOCUS       DATIMD010000198         3307 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_74981, whole genome shotgun sequence.
ACCESSION   DATIMD010000198 DATIMD010000000
VERSION     DATIMD010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3307
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74981"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1262)
                     /locus_tag="VLI40_04405"
     CDS             complement(<1..1262)
                     /locus_tag="VLI40_04405"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSU96446.1"
                     /translation="MTLGRYSLALVAATLSISAPRLRAQQAPATPAQSAWWHHITVIA
                     DDSMHGRRTGTADYVKAAHYVADEFASMGLQPGGTDGFFQTVHLAEARIVPEGSSVVL
                     QTAATADTLPLTVQLKPSTVSEADGPMVFVGYGLNLPGAHDDLAGVDLRGKVAVYLNR
                     MPQGLGATMFAHGRASRWRELQRLGAVAAIAIADAPPPGRERPARPAGRPVTGLAEDP
                     AEHGILVNVAADKADPIFTGSGHTYAELVAMADSGKPLPTIQLRPTFHARLQIERTPV
                     DAPNVVGILRGSDPELRDQYLVVSAHLDHLGIGRPVNGDSIYNGAIDNASGIATLLET
                     AREFHDRKIRGRRSVIFLAVTGEEEGELGSAYFALHPTVPQGQLVADLNTDMYFPIIP
                     FTGLFSYGWDESDLGKDIMPVLKAHGIA"
     gene            2057..2335
                     /locus_tag="VLI40_04410"
     CDS             2057..2335
                     /locus_tag="VLI40_04410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96447.1"
                     /translation="MTEAEYGQFSRGFAAEQAKLKTTPGDMAGALNAGIAASGLNRND
                     YVMVRQEVMMYGQVARANKTDQAGSLFSAQDLAVLNAHKSEIIQRTAP"
     gene            complement(2508..>3307)
                     /locus_tag="VLI40_04415"
     CDS             complement(2508..>3307)
                     /locus_tag="VLI40_04415"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSU96448.1"
                     /translation="RYVLCGLPVDRALTATMTEAGGSPTKIVIPAGTDAVVLRNVELS
                     TGESNSGSVSGMARARDGSGIAAAEVSLLDDPDKRVYTDSVGAFKLSDVPPGFHLLRI
                     RRLGFVPVLVQMRIAPHGVTPATVVMTASASVLTTVSVKAPSGQVLQLPSDVAHRLTA
                     GQGYYILAGDAKLRDVHTMSDVFRRLQGVTVKGDLAVSTRGINSLLADPCPLGIPLYV
                     NGAPMGNNVLDVAAPSEIAAIEVYPTAASMPPSLHPSPCGAILMWTK"
BASE COUNT          666 a         1035 c         1042 g          564 t
ORIGIN      
        1 ttggcgatgc cgtgcgcctt caacaccggc atgatgtcct tgccgaggtc ggattcgtcc
       61 catccgtacg agaacagtcc ggtgaacgga atgatcggga aatacatgtc tgtgttcaga
      121 tctgccacga gctggccttg aggtacggtc ggatgcagcg cgaagtacgc ggacccgagc
      181 tcgccctctt cctcgccggt gacggcgaga aaaatgaccg aacggcggcc gcggattttt
      241 cggtcgtgga attcccgggc ggtttcgagc agcgtcgcga tgccagacgc gttgtcgatt
      301 gctccgttgt agatgctgtc gccgttcacg ggccgaccga tccccagatg gtcgagatgc
      361 gcgctcacca ccagatactg gtcacgcaat tcgggatcgc ttccgcggag gatcccgacg
      421 acgttgggcg cgtcgaccgg cgtccgctcg atctgcaacc tggcgtggaa ggtggggcga
      481 agctggatcg tcggcagcgg cttgccggag tcggccatgg caaccagctc ggcgtacgtg
      541 tggcccgaac cggtgaagat cgggtcggct ttatctgccg caacatttac cagaataccg
      601 tgctccgccg gatcctccgc gagaccggta accgggcgac cggcgggccg cgccggccgc
      661 tcgcgtccgg gtggaggggc gtcagcgatc gcgattgccg cgaccgcgcc gagccgttgc
      721 agctctctcc agcgcgacgc acgaccgtgc gcgaacatcg tcgcgcccag gccctgaggc
      781 atcctgttga gatacaccgc gaccttgccg cgcagatcga cgccggcgag atcatcatgc
      841 gcgccgggca gattcagtcc gtaacccaca aagaccattg gtccgtcagc ctcggacacc
      901 gtcgagggct tgagttgaac cgtcagggga agcgtatcgg cggtcgctgc tgtctgcagc
      961 acgacgctcg acccttccgg cacgatgcgc gcttccgcga ggtgcaccgt ctgaaaaaac
     1021 ccatcagtgc cgccaggctg caggcccatc gacgcgaatt catcggcgac gtagtgcgcg
     1081 gccttcacgt agtccgctgt tccggtgcga cgcccgtgca tgctgtcgtc ggcgatcacc
     1141 gtgatgtgat gccaccacgc ggattgggcg ggagttgccg gagcctgctg cgcgcggagg
     1201 cgcggcgcgc tgatcgagag cgtcgcggcc accagcgcga gagaatagcg tcccagtgtc
     1261 atgcttgtgt ctgtaagaga atgcgtcgtg aagccagggc taacccaggc gatatcatac
     1321 gtgatcggag ccagccgcgt ttgctactgg cggccaggaa ggaatcgctc acacctgtcc
     1381 cttgacacca cagtcgcgga acagagattt cgcgcgttgg gccccagggt ccttcgccct
     1441 cgggcaacgt gcgatacgga gagtgatcat gtctatacga cgatatcgct ccttagcagt
     1501 cctgtttttg gccttggctc tgccggcctc cacacaggct cagttcggct cactgatcaa
     1561 aaaagccaag gcattgcgaa cgaacgttga ttccgcgaag gctgtcgtgg acacgacgcg
     1621 aactgtcgtt accgcgacga aatccgctgc agctgacgtg atgaccggca ccacggggcc
     1681 agctacaccg cccgactcgt ccggcggagc cgacggaaca ggcaaatcag ccggcggcgc
     1741 agggcacgga ggcgcagcgc accgaggtgc gaaggcggga gctgacgtgc cagctggatc
     1801 ggccggctcg acagcagctg gaggaagtgc agcccctgcc ccaaggcgag ggtctgtccc
     1861 ggctggggca ggcgcgaaaa cgaaagcttc agcgccaaac tcctcaaccg cgacaaattc
     1921 gacgcgatcg gcaacaccaa cgccgccagc agttacacca gcggttacac cagcggcgcc
     1981 cgcagcggct tccgcgccag ctacgcgtgg cgcatcgggt acacgcgcga cgccgacccg
     2041 aggtggcggc gcgcagatga cggaagcgga atacggtcag ttctcacgcg gattcgccgc
     2101 ggagcaagcg aagctcaaga cgacgccggg agatatggct ggagcgctca atgcaggcat
     2161 cgcagccagc ggactgaacc ggaacgacta cgtgatggtg cgacaggaag tcatgatgta
     2221 cggacaggtt gcgagggcca acaagactga ccaggccggc agtttattct cggcgcagga
     2281 tctggctgtg ctcaacgcgc acaagagcga aataattcag agaacggcgc cgtagaacaa
     2341 cacgacgctg atatgcacat cgaaatatga aacgctcggc gcgctttaat ccccttacgt
     2401 gcgcgccgag cgttttgtaa atgatacacc gatcgagaga agcggccggc ccgatccgcg
     2461 tgtcacggcg cgacgtccgc gcttgcagac cagcaagcgt tgaccactca ctttgtccac
     2521 atgagaatcg cgccgcacgg agatggatgc agcgacggag gcatggaggc ggcggtcgga
     2581 taaacctcga tggcagcgat ctcggacggt gcggccacgt cgagaacatt gttgcccatc
     2641 ggcgcgccgt tcacatataa cggtattccg agcgggcacg gatcggcgag cagtgaattt
     2701 atccctcgcg tacttaccgc gagatctccc ttgaccgtta caccctgaag ccgtcgaaac
     2761 acgtcgctca tcgtgtgcac gtcgcgaagt ttcgcatcac ccgccaggat gtaatagccc
     2821 tgtcctgcgg tgagccgatg tgcgacgtcg cttggaagct gaagcacctg cccgctcggc
     2881 gccttgacgc tgaccgtagt caacaccgat gcgctggcag tcatcactac cgtggcaggc
     2941 gtcacgccgt gcggtgcaat tcgcatctga accagcaccg ggacgaatcc caatcggcga
     3001 atccggagca ggtggaatcc gggaggcacg tcggaaagtt tgaaagctcc tacggagtcg
     3061 gtgtaaacgc gcttgtccgg atcgtccagc aacgacacct cggcggcagc tattccggac
     3121 ccatcgcgag cccgcgccat tccggagaca gatccactat tactttcgcc cgtcgagagc
     3181 tccacattcc tgaggaccac cgcatccgtg ccagctggga taacgatctt cgtcggactg
     3241 ccaccagctt cggtcatcgt cgccgtcagc gcgcggtcga caggtaatcc gcacagtaca
     3301 taacgac
//
LOCUS       DATIMD010000199         3365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_363170, whole genome shotgun sequence.
ACCESSION   DATIMD010000199 DATIMD010000000
VERSION     DATIMD010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3365
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363170"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..437)
                     /locus_tag="VLI40_04420"
     CDS             complement(<1..437)
                     /locus_tag="VLI40_04420"
                     /inference="COORDINATES: protein motif:HMM:NF013698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HSU96449.1"
                     /translation="MIYLGMDVHKEAITIAVLPAGARTPTRLDRLANDLPKLKRWLDR
                     IARDGELRICYEASGAGYVLHRAIQEWGYACEVIAPSLIPKRPGVQRKHDKRDATDLA
                     RFYRAGELTAVRIPSESDERVRDVVRCRETFQCEILKSRHYIL"
     gene            664..1203
                     /locus_tag="VLI40_04425"
     CDS             664..1203
                     /locus_tag="VLI40_04425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96450.1"
                     /translation="MQAAKAQMSAWTPEDSTRLLDPPAAFPQLPSAARRDLQRRGCRI
                     PRASGPDVSASQQARPNNVLAGAFLGPGQHNWAVLCSIADTSRILIYAGARSAHVDSV
                     ARIPDGGFLWQERGSARGFYRELGTATPHLIRRLARAAGDHAPPTVDHLGVNDYFAGK
                     ASTIYYFRRGRWLEFPGWD"
     gene            complement(1391..1783)
                     /locus_tag="VLI40_04430"
     CDS             complement(1391..1783)
                     /locus_tag="VLI40_04430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96451.1"
                     /translation="MKYSYSLAAVYAGILFGVIAAPCSLAAQAQEPAELQTFAMRTAS
                     VTAPAGVAASAVGPVVEQVAFHRASTESRVVADQDVVGPHVNRGLALTVAGIAAVGVG
                     YAVKGQAGTVIALGGGALALYGLYHWIK"
     gene            complement(2029..2487)
                     /locus_tag="VLI40_04435"
     CDS             complement(2029..2487)
                     /locus_tag="VLI40_04435"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HSU96452.1"
                     /translation="MKLTAGTPAPDFELESTDGPVSLSGLRGSRVVLYFYPKDDTPGC
                     TREACSFRDNMSRLQGHGATILGVSKDSIDSHKRFREKYGLPFALASDPENAVAKSYG
                     AFGKKMMYGREVTGTIRSTFLIDRDGRIERVWSPVKVDGHVDQILAALDQ"
     gene            2625..2915
                     /locus_tag="VLI40_04440"
     CDS             2625..2915
                     /locus_tag="VLI40_04440"
                     /inference="COORDINATES: protein motif:HMM:NF014643.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008219 - cell death [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HSU96453.1"
                     /translation="MTTTSISELKARLSAYLDIVRQGDEVLVTDRGRVIARLAPVGGK
                     VLDDSRRDALIRSGRMRPATARLPRNFWAKPRPRDADGRSLSALLDERAEGW"
     gene            2945..3364
                     /locus_tag="VLI40_04445"
     CDS             2945..3364
                     /locus_tag="VLI40_04445"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HSU96454.1"
                     /translation="MRFWDSSALVTLVLDQPRTAQARELHTQDPELVVWWASSIECAS
                     AIARLHRDGQLSAAEEAQARDLLTTLRASWFEVQAGDAVREQALRVLRLHPLRAADAM
                     QLAAALEWGGSPPEGQFVSFDQRLNAAAQREGFVTVS"
BASE COUNT          625 a         1057 c         1044 g          639 t
ORIGIN      
        1 ttgaggatgt agtgacgtga cttgagaatc tcgcattgga acgtctcacg gcaccgcacc
       61 acatcgcgca ctcgctcgtc actctcactc gggatccgca ccgcggtcag ctcgcccgct
      121 cgataaaacc gggcaagatc ggtagcgtct cgcttatcat gcttgcgctg cactccgggt
      181 ctctttggga tgagcgacgg cgcgatgacc tcgcaggcat atccccattc ctgtattgcg
      241 cgatgcagca cgtatccggc gccgctcgct tcgtaacaga ttcgaagctc tccatcgcgc
      301 gcgatccggt cgagccatcg cttcagcttc gggagatcat ttgccagccg gtcgagcctg
      361 gtcggcgtcc tcgcgccggc gggtaacacc gcgatggtga tagcctcctt gtgcacatcc
      421 attccaagat agatcattga gcgagtagca gtcgactctg atggcgatga catgggctgg
      481 tctccgtaga agggcgacag aaggaccgtc gcaggtggct ctggtaactc cggtcacacg
      541 tgaggagcta acccacgcaa agaccggggc cagcccagtc ataacttcta ggcatccgca
      601 ccgatcatca tgcattccgg ctaccgcttt ctaggtatcg cagttctctg cctggccgta
      661 cccatgcaag ccgccaaggc acagatgtcc gcgtggactc ccgaagactc gacgcgcctg
      721 ctcgacccgc cggccgcgtt tccacagcta ccctcggctg cgcgccgcga tctgcaacgc
      781 cgcggttgcc gaataccgcg cgcctcgggg ccggatgtct cagccagcca acaagccagg
      841 ccgaacaacg tactcgcggg tgccttcctc ggtcccggtc agcacaactg ggcggtgctc
      901 tgttccatcg ccgacacctc gcggattctc atctatgcgg gggctcgcag cgcccacgtc
      961 gattccgtgg cccggattcc ggacggcggc ttcctgtggc aggaacgggg aagtgcgcgc
     1021 ggcttctacc gggaactcgg aacggcgacg ccgcatctga tccgacggct ggcgcgtgca
     1081 gctggcgatc acgcgccccc gacggtcgat caccttgggg tgaatgacta cttcgccggc
     1141 aaggcatcga ccatctacta cttccgccgc ggccgatggt tggagttccc aggttgggac
     1201 tgacggcggg cttggcactg agcagccggt aacatagctg acaaacgttg aagcagtcgt
     1261 gcggttgcgg tagttcgctg cgcaccagta gggtcaggtc ttgcgccgtg cgccgttccc
     1321 ggtgattgca gcctttcgct acactacgcg ttgatttgac cgcgcacggg gcaaggcctg
     1381 accccgtttt ctatttgatc cagtgataca ggccgtacag tgccagtgcg ccgccgccta
     1441 aagcgatcac cgttccagcc tggcctttca cggcataccc cacgccgaca gccgcgatgc
     1501 cggcgacggt cagggcgagg ccgcgattga cgtgcggccc aacgacgtcc tggtccgcga
     1561 caaccctgga ctctgtcgac gccctgtgga acgccacctg ctcgaccacc ggcccgaccg
     1621 cactcgcagc gacgccagcg ggtgcagtaa cggatgccgt ccgcatcgcg aacgtctgga
     1681 gctccgccgg ctcctgagct tgtgcagcaa gagagcacgg tgcggcgatc acaccaaaaa
     1741 ggattcccgc ataaacagcc gccaacgaat acgagtattt catgaacggt cttctccagc
     1801 cgctgtgtcg actgtaaatg gtggtcgaga gtgcaatatg gacggcgagc gatgaatccg
     1861 agcaagcccg caatggaaca gaaacgcgaa cactgcgcgc cgcacagcaa cgctggacag
     1921 cattgcgtgc gatccagagt cgcgacatat ggctacgtac ccggttcagc gaacgttggg
     1981 tcgatcgaac tgccgcgcga cagaacgcaa accaccccgc ttgaatctct attgatcgag
     2041 tgcagcaagt atctgatcca catggccgtc gaccttcaca ggtgaccaca cgcgctcgat
     2101 gcgcccgtcc cgatcgatga ggaacgtgga gcggatggtt cccgtgacct ctcggccgta
     2161 catcatcttc ttcccgaagg ctccgtagct tttcgccacc gcgttttcgg gatccgacgc
     2221 gagcgcgaag ggaagtccgt acttctcgcg aaagcgcttg tgcgaatcga tcgaatcctt
     2281 ggacacgccg agtatcgtgg cgccgtggcc ctggagccgg ctcatgttat cgcggaacga
     2341 gcatgcctcg cgcgtgcagc cgggcgtgtc atcctttgga tagaagtaga gtaccactcg
     2401 cgagccacgc agcccggaga gtgatacggg accgtcggtg ctttcgagct cgaaatccgg
     2461 cgccggtgtg cctgcagtca gtttcataca ggtaacgtat gcgggtatgt gggcatgcgc
     2521 tcgcgcagaa ccagtcgtgc cctggtcgag acaagcaggc gcgatggatg accgccgata
     2581 gctcctcaat tgtcgagatc acagtatatg actagattag tcatatgaca acgacctcaa
     2641 tatccgaatt gaaggcgcgc ctcagcgcct atctggacat cgttcgtcag ggtgacgagg
     2701 tgctggtcac cgatcgcggc cgagtgatcg cccggttggc tcccgtgggt gggaaggttt
     2761 tggacgacag ccggcgggac gcgctcatcc ggagcggcag gatgcggcct gccacggctc
     2821 gccttccgag gaacttctgg gccaagccgc gtccgcgcga cgccgatggg cgttcgctct
     2881 ccgcattgct ggacgagcga gctgagggct ggtgaggttc aggtgaggtt caggtgaggt
     2941 tcaggtgagg ttctgggact cctcggcgct ggtaacgctg gttcttgatc aaccacgcac
     3001 cgcccaggct cgggagcttc atactcagga tcccgagctg gtggtctggt gggcctcctc
     3061 gatcgagtgc gcctctgcaa tcgcgcgtct gcaccgtgac ggccagctca gcgctgccga
     3121 agaggcacag gcgcgcgatc tgttgacgac gttgagggcg agctggttcg aggtacaggc
     3181 cggcgacgcg gttcgagagc aggcgcttcg ggtgctacga ctgcatccgc tccgcgccgc
     3241 cgacgcaatg cagcttgccg cagcgctcga atggggcggg tcgccgccag aggggcagtt
     3301 cgtttcgttc gatcagcgtc tcaacgcggc agcgcaacgc gaaggattcg ttaccgtatc
     3361 gtgag
//
LOCUS       DATIMD010000200         4876 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_654352, whole genome shotgun sequence.
ACCESSION   DATIMD010000200 DATIMD010000000
VERSION     DATIMD010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4876
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_654352"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..629)
                     /locus_tag="VLI40_04450"
     CDS             complement(<1..629)
                     /locus_tag="VLI40_04450"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96455.1"
                     /translation="MQRTARRGFTPAEPERMLHWCGTPIVANCNMRLPRQRERRPEGT
                     KIVQFRLIVALLLLAGGVATPAINAQQVKYPETHRGAVSDDYFGTRVPDPYRWLEDLN
                     SPQTAAWIAEQNQFTNSFLAQFPLRDTVRSRLTELFNYARVTVPQLIPGKRIFFRRNT
                     GLQNQAVLYVRDSVDGTSRAVLDPNTLSTDGSIALQEWAPSPDGRYLAYA"
     gene            838..1617
                     /locus_tag="VLI40_04455"
     CDS             838..1617
                     /locus_tag="VLI40_04455"
                     /inference="COORDINATES: protein motif:HMM:NF015709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family acid phosphatase"
                     /protein_id="HSU96456.1"
                     /translation="MTARSFISGLVTILSAAGLGACAPTPNVAVSPAAATAASATAPA
                     ATPAATARDVQWSRVAAEHTAIFVETYRAAGNRLESLSAGRAQGSWGVILDADETVLD
                     NSDYELARVPFGGSFDANAWDAWVAAARAPALPGAVAFTSRVHQLGGKVVIVSNRSDK
                     GCPATRANLDRVSIRADLVVCKTDKDDKNPRFDAVQGGTASPGFPAITVLEWIGDNIQ
                     DFPHLSQAIREEPESAFARFGDTFFALPNPMYGSWQSNPLK"
     gene            1631..2677
                     /gene="ligD"
                     /locus_tag="VLI40_04460"
     CDS             1631..2677
                     /gene="ligD"
                     /locus_tag="VLI40_04460"
                     /inference="COORDINATES: protein motif:HMM:TIGR02779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HSU96457.1"
                     /translation="MSPAGGDTKPAPEPMYASVGHEIPTGRNWTFEPKYDGVRVLAHV
                     TVRGVRLTTRNGNDKARQFPEITAALAELGARRRQTFTLDGEIVALINGEPARFQALQ
                     SRMHLKGADDIATAAQHMPAALVAFDIVNDDGTDLTRLPWAERRQHLESLLAGLATTR
                     RGRATDPVARHIRLSPTRRNGSAMLKRASDEGWEGIIAKRTDARYTPGVRSDAWLKLK
                     IDFEQEFVVGGFTAPRKSRKDIGALLLGYYDARGKLIYAGHMGGGFTREGLRQMRQRL
                     DPLIRKTSPFDEEPRTNEPATWVRPSVVVEVKFSEWTAEGRLRQPIFLGVRDDKPARE
                     VTYEPESIQRRIVG"
     gene            2747..3121
                     /locus_tag="VLI40_04465"
     CDS             2747..3121
                     /locus_tag="VLI40_04465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96458.1"
                     /translation="MRLKTVALALGLMCLGGATACTRTSSSGAGGAAAPEQVTTLKVD
                     NQGSLDMDVYVVRSPGGQRIRLGTATAVSVTKMTIPSDVLIGANTSLRFIADPIGGVR
                     PSISSSILVTRGDEVTLQIPPR"
     gene            3273..3899
                     /locus_tag="VLI40_04470"
     CDS             3273..3899
                     /locus_tag="VLI40_04470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HSU96459.1"
                     /translation="MSNDMGNGMSNSTLPSRDSAVALMYEYTPSESLRKHMLGVEAAM
                     RAYAVHYGEDVERWGLAGLMHDFDYERFPNASRSATEEHPSEGVRILRALGYPEDVLD
                     AIMGHAAYTGTPRTSLMSRTLFAVDELTGLITATALVKPSKSVHDVEPRSVRKKMKDK
                     AFARGVSREDVIQGAQELGVDLDEHIAFVVAALQGSAETIGLQGHPAA"
     gene            complement(3896..4606)
                     /locus_tag="VLI40_04475"
     CDS             complement(3896..4606)
                     /locus_tag="VLI40_04475"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU96460.1"
                     /translation="MNVSKARVLVTGGSSGIGKATALALAELGARVAICGRDRTSIEK
                     AAGEIGATPFVADVSREADVVALIPKVVEALGGYDALINNAGFGRFAPLVETTVDDMR
                     AVWETNVLGATLAARESAKHFIKQSYGNIVNVASTSAAHGSANGSAYSSSKFALASLT
                     ECWRAELRKSNIRVMQINPSEVLTEFAHRARGTARVDNPSKLRGSDIAAAIVSMLAQD
                     DRAMITELTVWASNPRDN"
BASE COUNT          980 a         1512 c         1478 g          906 t
ORIGIN      
        1 gcgtacgcca gataccgtcc atcgggagac ggcgcccatt cctgcaatgc gatcgatccg
       61 tcggtcgaga gcgtgttggg atcgagcacg gcgcgtgaag tgccatccac gctgtcacgt
      121 acgtagagca cagcctgatt ctggagcccc gtgttgcgcc ggaagaaaat ccgtttgccg
      181 ggaatcagtt gtggtaccgt cactcgcgcg tagttgaaca gctcggtcag ccggctgcgc
      241 accgtgtcgc gcaacggaaa ttgcgccagg aacgagttgg tgaattgatt ctgttcggcg
      301 atccacgccg cggtctgcgg actgttcaga tcttccagcc agcggtatgg atccggaact
      361 ctggttccga agtaatcgtc ggaaaccgca ccgcgatgcg tctcgggata tttcacttgc
      421 tgtgcgttga ttgctggtgt cgcgacgccg ccggcaagga gcagcaatgc aacaataagg
      481 cggaactgca cgatcttcgt tccctcaggc cgtcgttccc gctgccgcgg gagacgcatg
      541 ttgcagttcg ctacgatggg tgtgccacac cagtgaagca tacgctccgg ctcggcgggt
      601 gtgaagccgc gccgagccgt cctctgcacc gcccgcactc tctgccactt acgcgctcgt
      661 cttccgccgc agagtgggct tcatgagatt cgcgcaatat tagttcgtgt attcgggtgg
      721 atgccgcgaa gcccggtcct tgcaaacaag aaaggaagca agagaagcgt cctttgtata
      781 acacgatgca tgtcactgga ttagaacgac tgttcgacca accctgaccc gaaatcaatg
      841 acagctcgat cgttcatcag cggacttgtc acaatcctgt ctgccgccgg actcggtgcc
      901 tgcgcaccaa ctcccaacgt tgctgtgtcg ccggcagcag cgactgcagc atcggccacc
      961 gcacccgctg caacgcccgc tgcaactgcg cgcgacgtcc agtggtctcg tgtagccgcc
     1021 gagcacacgg cgatcttcgt ggagacgtat cgcgccgcgg gcaacaggct cgagtcgctt
     1081 tcagccggcc gcgctcaggg ctcgtggggc gtgatactgg acgctgacga gacagttctc
     1141 gacaactcgg attacgaatt ggcccgagta cccttcggcg ggtcgttcga cgccaacgcc
     1201 tgggacgctt gggtagcggc ggcacgcgct ccggcgcttc caggagctgt agcattcacg
     1261 agtcgtgtgc atcagctcgg tggcaaggtg gtgatcgtca gcaatcgaag cgacaagggg
     1321 tgcccggcca cgcgtgccaa cctcgaccgc gtctcgataa gggcggatct ggttgtgtgc
     1381 aaaaccgaca aggatgacaa gaacccgcgc ttcgacgcag tgcagggcgg gacagcgtcg
     1441 ccgggcttcc cggcgataac ggttctcgaa tggattggcg acaacatcca ggacttcccc
     1501 cacctttccc aggctatacg agaggagccc gaaagcgcct tcgccagatt cggcgacact
     1561 ttcttcgcgc tccccaaccc gatgtatgga tcatggcaga gcaaccctct caaatagcca
     1621 cgacgtcgcc atgagcccgg caggcggtga caccaagccg gcaccagagc cgatgtatgc
     1681 gagcgtggga cacgagatac ccaccggccg gaactggact ttcgagccca agtatgacgg
     1741 tgtccgggta ctggcgcatg taacggtgcg cggtgtgcgc ctcaccaccc gaaatggaaa
     1801 cgacaaggcg cggcagtttc ccgagataac cgccgcgctc gccgagttgg gcgcgcgacg
     1861 caggcagaca ttcacgctcg atggtgagat cgtcgccctg ataaacggcg agccggcgcg
     1921 gtttcaggcc ctgcaaagcc gaatgcacct caagggcgcc gacgacatcg cgaccgcggc
     1981 tcaacacatg ccggccgcac tcgtcgcatt cgacatcgtg aacgacgacg gcaccgacct
     2041 cactcgtcta ccctgggcag aacgccgaca acatctcgaa tcgctgctcg ccggtctggc
     2101 gacgaccagg cgcggtcgtg cgaccgatcc ggtcgctcgg cacatacgtc tttcgccgac
     2161 cagacggaac ggcagtgcaa tgctcaaacg cgcgagcgat gaaggctggg aaggaatcat
     2221 cgcaaaacgc acggacgcgc gttacacgcc cggtgtcagg tcggacgcgt ggctcaagct
     2281 caagatcgac ttcgagcagg aatttgtcgt tggcggcttc accgcgccgc ggaagagccg
     2341 caaggacatc ggtgcgcttc tgcttggata ttacgacgct cgcggcaagt tgatatacgc
     2401 cggtcacatg ggtggcggct ttacccgcga aggcctccga cagatgcgcc agcgcctcga
     2461 tccgttgatc cgaaagacgt cgccattcga cgaggagccc aggacaaacg agcctgcgac
     2521 gtgggtgcgg ccgagtgtgg tggtggaggt gaagttcagc gaatggaccg ccgagggccg
     2581 tcttcgccag ccgatctttc tgggtgtccg cgatgacaag cctgcccgcg aggtcactta
     2641 tgaacccgag agcatccagc ggcgcatcgt ggggtaacca cacggaaacc ccgtcgtggc
     2701 gcgaggaatg cgctacgcac gggtaaatcg tgatcaggag aaacagatgc gcttgaagac
     2761 agttgcactc gctctcggtt tgatgtgtct cggcggcgcg acagcgtgca cccgcacatc
     2821 gtcatccgga gcgggcggcg cggcggctcc ggaacaggtg accacactca aggtggataa
     2881 ccagggctcg ctggacatgg atgtatacgt cgtccgctcc cccggtggtc agcgaatccg
     2941 gctcggcacg gcgaccgccg tgtcagttac aaaaatgacc attccgtccg acgtgctgat
     3001 tggcgctaac acctcgctgc gttttatcgc ggacccgatc ggaggagttc gtccctcaat
     3061 cagcagctcc atcctcgtaa cacgcggcga cgaggtcaca ttgcagattc cgccccgata
     3121 aagcacggca gtctcacgtc gcatggaatg cgactctcag cgcagtatat tcagcgacgg
     3181 tacgaaaaat cactcgtacc gtcgctttgt tgtgcgacgt ttaccatcac tgtcaccatc
     3241 accgtcaccg tcagcaggca cgagcaatcg gcatgagcaa tgacatgggc aatggcatga
     3301 gcaattcgac actcccgtcg cgcgactcag cagtagcgct gatgtacgaa tacaccccgt
     3361 cagaatctct tcgcaaacac atgcttggag tggaagcggc aatgcgcgca tacgccgttc
     3421 actacggcga ggatgtggag cgctgggggc tcgccggcct gatgcacgac ttcgattacg
     3481 agcgctttcc gaacgcgagc cgctccgcga ccgaagagca tccgagtgag ggcgtgagga
     3541 tcctgcgcgc gcttggctac ccggaggatg ttctcgacgc gatcatgggt cacgcggcgt
     3601 acaccggcac gccgcggacc agtctgatgt cgcgcacgct cttcgcagtg gatgagctga
     3661 ccggactcat caccgcgacg gctctcgtca agccatcaaa gtcggtacac gacgtcgagc
     3721 cccgatctgt gcggaagaag atgaaggaca aggcgttcgc tcgcggtgtg agccgcgagg
     3781 acgtcattca gggcgcgcag gagctcggcg tcgacctcga cgagcacatt gcgttcgtag
     3841 ttgcagcatt gcagggatcg gcagagacga tcggcctgca ggggcacccg gcagcctagt
     3901 tatcgcgtgg gttgcttgcc cacacagtca gctcggttat catcgcacgg tcgtcctgcg
     3961 ccagcatgct cacgattgcc gccgcgatgt cggagccgcg caatttgctc ggattgtcca
     4021 cgcgcgccgt tccgcgggcg cgatgtgcga actcggtcag tacctcgctc ggattgatct
     4081 gcatcacacg aatgttgctc ttcctcagct ccgcgcgcca gcactccgtg agtgatgcaa
     4141 gcgcgaactt cgacgaggag taggccgacc cgttcgccga gccgtgcgcc gccgatgtcg
     4201 atgccacgtt cacgatgtta ccgtacgact gcttgatgaa atgctttgcc gactcgcgtg
     4261 cggcgagggt cgcgccaagc acgttcgtct cccataccgc tcgcatgtca tcgacagttg
     4321 tctcgaccag cggagcaaaa cgaccgaacc cggcgttgtt gatgagcgcg tcgtagccac
     4381 cgagtgcctc cacgaccttc ggtatgagcg caacgacatc ggcttcccgg ctgacgtccg
     4441 cgacgaatgg cgtggcaccg atctcaccgg cagccttctc gatactcgta cggtcccgtc
     4501 cacagatggc gactctcgca ccaagctcgg caagtgccag tgccgttgcc tttccgatgc
     4561 cgctcgaacc gccggtgacg agcacccgtg ccttggaaac attcattgtc ggcctctctt
     4621 tatcgatagg tggaaaattc atcatggaag tgctgccagc cgattgcggc ggtcagcatg
     4681 tgacaccatt gtaagtttat ggatggccgg tcgtgtatgc accccgagat ccggcacgga
     4741 tgtagctaat aacggctgac aaaaccatcg ttcgcgcgcc ccgagccggc taccgcacgg
     4801 ccgatggttt tgccaagtgc tctcactcga cttcacatgc agaagaacca ctttgaagat
     4861 accgtaattg cgggcg
//
LOCUS       DATIMD010000201         3978 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_364012, whole genome shotgun sequence.
ACCESSION   DATIMD010000201 DATIMD010000000
VERSION     DATIMD010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3978
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364012"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..563
                     /locus_tag="VLI40_04480"
     CDS             <1..563
                     /locus_tag="VLI40_04480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96461.1"
                     /translation="VAWQGPSVSSDPRGTYAADVLSEIVNDNQSGFHTRLVDSGVFQE
                     AALGYTTRAHTGPITFHGVTTAAKLPDALTALYTELDYMAEASYFSPTTIAAATKRRE
                     VASVLELENAHGLALDLAETWAVAGANYFRGYSDNMAATTENDLHSYVERYLFHKPFV
                     IAALVPPDRTAATATVLAEALGEGRP"
     gene            560..1942
                     /locus_tag="VLI40_04485"
     CDS             560..1942
                     /locus_tag="VLI40_04485"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HSU96462.1"
                     /translation="MKSLPGRLSRTQTISRLLGACTAALAVACAHAPPPESAMSVITA
                     EGRLAPLDSVTVSYDVAGIRVIQRPNYANDAVAVNIYLLGGTRQLTAATQGIESLLLH
                     GGEYGTQKYPGGDWRTAWGLTGSRIVVDPEADWTVYGFRGIRQEFDSSWDAFADRLMH
                     PTLSSSSLAIFRARLVADSRLANDDPDAYIEKLADSVAFIGQPYGLNPDGTEATLAAL
                     DSATVGRYEDQIVKSRLLLVVVGNVTRVQVEAAVSRTLAALPAGNYTWTLPSVPNASN
                     SSINLRWRVLPTNYVVGIFRGPDAASPSSPAFRVALALLSSAMTNAIREERGLSYAAN
                     AIWIERGATAGAVYVSTAAPTTVLPLISKQMDLIRHIPGSVNLHNFTDQFIVEYFADN
                     MTDAAQADFLARAQLYQGDYRRASQAMEDLRHVSAGDVRDAATRYFNHIHFVYLGDTT
                     RVSRKLFTGF"
     gene            complement(1966..2391)
                     /locus_tag="VLI40_04490"
     CDS             complement(1966..2391)
                     /locus_tag="VLI40_04490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96463.1"
                     /translation="MHLSDTQTYWILQALASLFLAILFLQSGIDKIVDRRGNLDFLTG
                     HFAQSPLAKTVGPMFLTMTILETLSGLLSGIGFLLVVFRHSPDVAFCGAVLSGVSLCA
                     LFFGQRVAKDYAGAAVLVPYFLLALVAMWLLGTSHLVTI"
     gene            2464..>3978
                     /locus_tag="VLI40_04495"
     CDS             2464..>3978
                     /locus_tag="VLI40_04495"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSU96464.1"
                     /translation="MPTRSTNMNTDQSGLAGQSGDLIDEDQTLQTDQSGESGFAALGL
                     DPAILSALTALGYEEPTPIQTETIPALIAGKDVLGQAATGTGKTAAFSLPILQRLHES
                     HRKHGSGPYALILTPTRELAMQVAEAIHKYGKAMGVSVLPVYGGAAMAQQLKALKRGV
                     DIVVATPGRALDHIRRKSLQLGAVRTVVLDEADEMLDMGFAEDLEAILSETPADRQTA
                     LFSATIAPRIAAIANKHLKNPVRVTIARDKTKAGSVPRVRQMAYIVPRVHKMTTLGRV
                     LDMESPKSALVFCRTRTEVDQVTETLNSRGYRAEALHGGMSQEQRDRVMKKFRANTAD
                     LLVATDVAARGLDIGHLSHVFNYDVPTSPDAYVHRIGRTGRAGREGVAITLAEPREHR
                     FLRNIENITKQKIEIATVPTVADMRVRRVELTRATLQEILIGDQLDEYRGVVESLADG
                     DYDVMDIAAAAVKMAHEASGNDKHESEEEIPVQRPPAQRSSTQHDRSSERATDRP"
BASE COUNT          840 a         1213 c         1205 g          720 t
ORIGIN      
        1 aagtcgcctg gcagggtccc agcgtttcca gcgacccgcg aggaacgtat gcggcggacg
       61 tactatcaga aattgtcaat gacaatcaat ccggttttca cacccgactc gtcgatagcg
      121 gcgtgtttca ggaagccgca cttggctaca cgactcgcgc acacaccggg ccaatcacct
      181 tccacggtgt taccacagcg gccaagcttc ccgatgcgct gacagcactt tacacggagc
      241 tcgactacat ggcggaggca agctacttct ccccgacgac aatcgccgcg gcgacaaagc
      301 ggcgcgaagt cgccagcgtg ctcgagctcg aaaatgctca tgggctggcg ctcgatctcg
      361 ccgagacgtg ggcagtagcg ggcgctaatt atttccgcgg ctacagcgat aacatggcag
      421 cgaccaccga gaatgatctg cattcatacg tggagcgcta tctcttccat aagccgttcg
      481 tgatcgcggc acttgtaccg cccgaccgga ctgcggctac tgcgaccgtt cttgccgaag
      541 ctctcgggga gggcagaccg tgaaatcgct gcctggaaga ttatcgcgca cacaaaccat
      601 ctcgcgacta ctcggtgcct gcacggcggc gctcgctgtt gcctgcgccc acgcaccacc
      661 gcccgagagc gcaatgtcgg tgatcactgc cgagggacgg ttggcgccac tggacagtgt
      721 gacagtttcc tatgacgtcg ctggaattcg cgtgatccag cggcccaact acgcgaatga
      781 cgcggtagcc gtcaacattt atctgctggg cggcaccaga cagctgacgg cagccacgca
      841 gggaatagag tcactgttgc tgcacggcgg tgaatacggc acgcaaaagt atccgggtgg
      901 cgactggcgt actgcatggg gactgacggg aagccggatc gtggtcgatc cggaagctga
      961 ctggacagtg tacggctttc gcggcattcg ccaggaattc gattcatcct gggatgcatt
     1021 cgcagaccgt ctcatgcacc cgacactctc gtcgtccagc ctggcgattt tccgtgcgcg
     1081 gctcgtagct gatagccgtc ttgcgaatga tgatccggat gcgtacatcg agaagcttgc
     1141 tgacagcgtt gccttcatcg gtcagcccta cggcctgaat cctgacggta ccgaggcgac
     1201 gctcgcggcg ctggactcgg cgacagtcgg aagatatgag gatcagatcg tcaaatcgcg
     1261 attgctgctc gtggttgttg ggaacgtaac tcgcgtgcag gtcgaagccg ctgtctcccg
     1321 gacgttggct gcgttgcccg cagggaacta cacgtggaca cttccgtccg tgcccaatgc
     1381 atccaactcg agcatcaatc taaggtggcg agtcctgccg acgaactatg tcgtgggaat
     1441 attccgcggc cccgatgcgg catcgccttc atcgcctgca tttcgcgtgg cactcgcact
     1501 tctctcgagc gccatgacga acgcgattcg tgaggagcgc ggtctcagct atgcggcgaa
     1561 cgcaatctgg atcgagcgtg gtgctactgc tggcgccgtc tacgtatcga ctgccgcacc
     1621 gacgaccgtg ctgccattga tatcgaagca gatggatctc atccgccaca tacccgggtc
     1681 tgtgaacctt cacaatttca cggatcagtt catcgtcgaa tacttcgccg acaacatgac
     1741 ggatgcggcg caggccgact ttctggcacg tgcgcagcta tatcagggcg actaccggag
     1801 ggcaagccag gccatggagg acttacgcca cgtgtcggcc ggtgatgtgc gtgacgcggc
     1861 aacaagatat ttcaatcaca tccacttcgt gtatctgggc gacacgacgc gggtgagtcg
     1921 caagctgttc accggattct aaaatcggac tccgtcgatt tagtatcaga tcgttactaa
     1981 atgcgacgtc cccagtagcc acatcgccac cagcgccagc aggaagtacg gcaccagcac
     2041 tgcagcgccg gcgtaatcct tcgccactct ctgcccgaaa aacagagcgc agagcgacac
     2101 gcccgacagt acggctccgc agaaagcgac gtccgggctg tgcctgaaca cgaccagcag
     2161 aaagccgatg ccgctcaaca gcccggacag cgtctccaga atcgtcatgg tcaggaacat
     2221 cggtcccaca gtcttcgcga gcgggctctg ggcgaagtgg ccagtcagaa agtcgaggtt
     2281 cccgcgtcgg tccacgatct tgtcgattcc ggactgcagg aagaggatcg ccagaaacag
     2341 cgatgcgagt gcctgaagaa tccagtatgt ctgtgtgtcg gagagatgca tgaggctgga
     2401 gaatacgttg ccgctgctcg cagtcaacgg ggtggagtag atattgcggg tttagattga
     2461 acgatgccta cccgttctac caacatgaat accgaccagt ccggactggc cggccagtcc
     2521 ggcgacctga tcgacgagga ccagacatta cagactgacc agtccggtga gtccggattc
     2581 gccgcgctgg gactggatcc ggcgatcctc tcggcactga ctgcacttgg atacgaggaa
     2641 ccgaccccga tccagaccga aacaattccg gctctcatcg caggcaagga tgtccttggc
     2701 caggctgcca ctggcaccgg aaagaccgcc gccttctcgc tcccgattct ccagcgcctg
     2761 catgagtcac accggaagca cggcagcggc ccgtatgcac tgatcctcac gcctactcgt
     2821 gagcttgcga tgcaggtcgc ggaggcgatt cacaagtacg ggaaggcgat gggcgtgtcg
     2881 gtactgccag tgtatggcgg tgcggcaatg gcgcagcagc tcaaggcgct caagcgcggc
     2941 gtcgacatag tggtcgcgac accgggccgc gcgctggatc atatccgtcg caagtcgttg
     3001 cagctcggtg cggtgcgcac ggtggtgctc gacgaagcgg acgagatgct cgacatggga
     3061 ttcgccgaag atctcgaagc cattctcagc gagacaccag ccgatcggca gacagcgctg
     3121 ttctcagcga ccatagcgcc gcgcatcgcc gcgatcgcga acaagcatct caagaacccg
     3181 gtacgcgtaa ccatcgcgcg cgacaagacc aaggctggct cggtcccacg cgttcgccag
     3241 atggcctaca tcgttccgcg tgttcacaag atgaccacac tcggccgcgt gctcgacatg
     3301 gagagcccga agtcggcgct ggtcttctgt cgcacgcgca ccgaagtgga tcaggtcacc
     3361 gagacgctca actcacgcgg gtatcgcgcc gaggcgctgc atggcggaat gtcgcaggag
     3421 cagcgcgacc gggtgatgaa gaagttccgc gcgaacaccg cggatctgct ggtagcgacg
     3481 gacgtcgccg cgcgcggcct cgacatcggg catctgtcgc acgtcttcaa ctacgacgtt
     3541 ccgacctcgc cggacgcata cgtgcatcgt atcggacgca ccgggcgagc aggacgcgag
     3601 ggcgttgcga taacgctcgc cgagccgcgc gagcaccggt tcctgcgcaa catcgagaat
     3661 attacaaagc agaagatcga gatcgcgaca gttccaacag tcgccgacat gcgcgtgcgg
     3721 cgcgtcgagc tgacgcgcgc gacactgcag gagattctga tcggtgatca gctggacgag
     3781 tatcgcggag ttgtcgagtc gctggccgat ggcgactacg atgtgatgga cattgcagcg
     3841 gctgctgtga agatggcgca cgaagcgagc ggcaacgaca agcacgagtc ggaagaagag
     3901 attcccgttc agcggccacc ggcgcaacgg tcatcgacgc agcatgatcg ttccagcgag
     3961 cgcgcaaccg atcgcccc
//
LOCUS       DATIMD010000202        10062 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4405691, whole genome shotgun sequence.
ACCESSION   DATIMD010000202 DATIMD010000000
VERSION     DATIMD010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 10062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10062
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4405691"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            40..960
                     /locus_tag="VLI40_04500"
     CDS             40..960
                     /locus_tag="VLI40_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase"
                     /protein_id="HSU96465.1"
                     /translation="MRREPFTVGIIQEAVAATPAETLDRAVARVREAAGRGAQVICLQ
                     EMFNSHYFCTSQSCERFDIAEPIPGPVTDRMQEVARELEVVIIVPIFERQAAGLYRNS
                     AAVIDADGSLLGVYHKMHIPDDPLYYEKYYFTPGDANRTYEKEDHPGASGFRVWKTRY
                     ADIGVLICWDQWYPEAARITALLGADIIFYPTAIGWHPAEKEEFGPSQLDAWRTAQRA
                     HAIANGVYVASPNRVGFEEEAGTDGIEFFGHSFVSDPFGRVIAEAGLEPTVLVAKCDP
                     ALIEYTRRNWPFLRDRRIDAYSPILNRYLG"
     gene            957..2018
                     /locus_tag="VLI40_04505"
     CDS             957..2018
                     /locus_tag="VLI40_04505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HSU96466.1"
                     /translation="MTRWRMPAEWERHDATWIAWPHHEPDWPGKLEAVRWAYAEIARV
                     LAAHERVEILCHDETVRDSAAAMLRSHDVAMQRVNLVLVPTDRVWLRDSGPSFVWNEN
                     GEVELIAWDFTAWAKYTDFARDRRVPDAIQNMTGFPETPALRPDDPRRRLVLEGGGIE
                     VNGQGRIIVTEEWLLSDVQVRNPGLTRAGYEEAFSTYLGCHDTIWLGNGCAGDDTHGH
                     IDDVARFVNFDTVALAYEADPSDANHASSVDNLERLRLAAERQPLNVVLLPYPRPLIM
                     DGQRLPASYANFYIANDVVVVPTFNDANDRVALDIIARMFPDRSVIGIHAVDLVWGMG
                     TLHCLTQQQPAMAIDYRGP"
     gene            2053..2496
                     /locus_tag="VLI40_04510"
     CDS             2053..2496
                     /locus_tag="VLI40_04510"
                     /inference="COORDINATES: protein motif:HMM:NF016056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF393 domain-containing protein"
                     /protein_id="HSU96467.1"
                     /translation="MEKQLTVIYDGHCGVCTRLANRVARLDTHGVLEVVPSQKAGVRE
                     RFPWISASAYDESLQVVRASDGRTWEGAAAVEEVIRTLRAGWVVSWLFRIPFARRIAE
                     RGYRWFADHRGELGCGDHCQVHSSVHNGVHNGVHTASPAVGTKNS"
     gene            complement(2457..4562)
                     /locus_tag="VLI40_04515"
     CDS             complement(2457..4562)
                     /locus_tag="VLI40_04515"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF013180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HSU96468.1"
                     /translation="MRTPTAHITLPIPAQLPQQLPQQLPQQAGRETASVWEISLFLLG
                     TACFAGYLAWVGFAGLGGNAAPRIPIVTQALLAALSILGAALSGIVSTRIADRATRRA
                     WVFFGIALIATGVVSTAWVYRLASGSAAAGPLALQLTAAAYDVFLLAALVTFPVRRMD
                     SRDRSTFWFDGAIVAGVAALLTWHLLLRAALVAAGSDWHTSINALAYPVADVVLLFAA
                     VVLLLRRPLQGSLLSIRIIAATILLNTAADLLYMWAYIAHESQGGRLFYVAWAIVAWM
                     ATAAVFAQCQNVQSDSESIHITSHEQRTNPQSLIPYLAIASIYATLIVEAFRSEARAA
                     AAALSSGHPSSFAGNFPVTTIVVGAMVVTAIVIVRQVAAQRRNAELVRERLAREAHFR
                     ALVQHSSDMVLVLEADGTVREASPAVARVLGHAPRKVVGRTFWDFFVADDMAVVQADI
                     AQAIAAGDGEVTASGPCEWRIRAANGSERWVEAICTNLLDDPVVMGLVINGRDVSERK
                     QLEAELTHRAYHDTLTGLVNRTRFRAKIVEAIARTTSGTRSDDGRSGLAVLYIDLDGF
                     KAVNDIFGHDAGDRVLAAIADRLRDATRGSDTAARLGGDEFAILLERLRDADEVRMVA
                     KRVLHLVRGPIRIDHRDVVVGASIGIVCASLGDTSRESPTVVDPDALLHNADSAMYAA
                     KARGRGNYEFFVPTAGEAV"
     gene            complement(4761..4833)
                     /locus_tag="VLI40_04520"
     tRNA            complement(4761..4833)
                     /locus_tag="VLI40_04520"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4798..4800),aa:Asn,seq:gtt)
     gene            complement(4941..5126)
                     /locus_tag="VLI40_04525"
     CDS             complement(4941..5126)
                     /locus_tag="VLI40_04525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96469.1"
                     /translation="MQFSARDIADIPARKLTCNFILARETDELYRNCMQSSNRANDVL
                     PCNLNRNCLRGAIVLRG"
     gene            complement(5165..6283)
                     /gene="thrC"
                     /locus_tag="VLI40_04530"
     CDS             complement(5165..6283)
                     /gene="thrC"
                     /locus_tag="VLI40_04530"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HSU96470.1"
                     /translation="MIYPLVMPSDATGLDAEPRAARGVLARYAEFLPLTAATPALSLA
                     EGDTPLYPVPRLAKWVGVDDLHLKYEGANPTGSFKDRGMVVAVAKAIEAGSTTIICAS
                     TGNTSASAAAYAARAGIAAVVLLPAGKVARGKLAQAIMAGATVIMLDGNFDEALSVAR
                     DLARDYRVALVNSVNPHRIAGQTTAAFEVCDALGDAPEVVALPVGNGGNVTAYSEGFR
                     IYRNANRSTRMPVFIGAQAAGAAPLVRGAPVANPETVATAIRIGNPASWTSAVNAVTS
                     SGGEFSAVTDDAILESYHKVAELEGIFCEPASAAGIAALRIAVRNGRVDAGMRAVCVL
                     TGNGLKDPDRAVPESFAPEILPADAIELAKRLHLTPLS"
     gene            complement(6280..6741)
                     /gene="aroH"
                     /locus_tag="VLI40_04535"
     CDS             complement(6280..6741)
                     /gene="aroH"
                     /locus_tag="VLI40_04535"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR01796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004106 - chorismate mutase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HSU96471.1"
                     /translation="MVIAQDLDAWRVRAVRGATTVAVDNQLLVHDAIRELLTILMAHN
                     DIRKSDIVSAVFTATTDLRSAFPATAARDLGWNDVPMLCASEIDVPDAQPRCLRVLLH
                     VDRRASQPALVPIYLRDAASLRPDLSAATQREQNVTQPDLVPRELAGMARS"
     gene            complement(6735..7412)
                     /locus_tag="VLI40_04540"
     CDS             complement(6735..7412)
                     /locus_tag="VLI40_04540"
                     /inference="COORDINATES: protein motif:HMM:NF012998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase domain-containing
                     protein"
                     /protein_id="HSU96472.1"
                     /translation="MRRSTAQLSPAREHSDDRTRVAFQGELGAYGDQAIAQRWHGGAV
                     PTPSASFEHVVADVAWEIADFGIIPVWNSVVGEIATGCAAVRLARSSPYGLVVIGDTH
                     VVVRHHLLALPGSQMDDIRSVSSHPVALAQCGRFLATHPKIVPTPGYDTAGAARDLVM
                     RGARNAAAIAGRIAAERYGLVVLEADIQDVPDNVTHFLILAHPAYDSGVSRMPRASKL
                     AGEVVRW"
     gene            complement(7418..8419)
                     /gene="aroF"
                     /locus_tag="VLI40_04545"
     CDS             complement(7418..8419)
                     /gene="aroF"
                     /locus_tag="VLI40_04545"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF006421.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HSU96473.1"
                     /translation="MSQSAPEYALAAHPRTAGNTSSSTRPVHVTSTLVIGGRDVVIAA
                     GPCSVEGYDMLLASARHVQSAGGTLLRGGAFKPRTSPYAFQGLGEEGLLLLAAVREQT
                     GMPIVTEVMDTRQVQRVAQIADVIQVGARNMQNFPLLAELGRAGKPVLLKRGASARIS
                     ELLLAAEYVMANGNERVILCERGIRTFETITRNTLDISAIPVLKAETHLPVIVDPSHA
                     GGRADLVLPLALAAIAAGADGLIVEVHPDPAVARSDADQQLTFAQFTDLMHSISLIAT
                     ASNRTVRTPAPAPLLPNIVASASSRDIADSIRPASSHDVHTHAEEARADESLAVVAA"
     gene            complement(8671..9120)
                     /locus_tag="VLI40_04550"
     CDS             complement(8671..9120)
                     /locus_tag="VLI40_04550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96474.1"
                     /translation="MEQNRPLARAGYLLAASLFAVPLIDAIMPLMPLRFSEERWRWSA
                     VGQVSNLLLVPLVGILLAIAVTIIVDDRRVRRVLGIICGLLALTLAIMSVSFVLDYFQ
                     IRTAVIPRLRQASSMASITTGVKDIFYIIVLVLLARACLAGPKTTQA"
     gene            complement(9205..9663)
                     /locus_tag="VLI40_04555"
     CDS             complement(9205..9663)
                     /locus_tag="VLI40_04555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96475.1"
                     /translation="MRLAAITMLATALTIIPLHAPAQDTTSSDYRVSIAGTVAGTATA
                     VVNLPGNAVVLHQDSTPNLPSRQIASADQGSIMLTTTDPALVSAIEAWMKADNSGYKD
                     TVQRKTVEIERIGGGANSRTRLTGAWPTKVTAATTGNTITIVYQQLAPIP"
     gene            9662..>10062
                     /locus_tag="VLI40_04560"
     CDS             9662..>10062
                     /locus_tag="VLI40_04560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96476.1"
                     /translation="MFKVRGLMAFLRREFQPVRANVRPLDRWDVVHAVVKTAKAGAQR
                     LVIPANAGTRISVIPAKAGIHLLPTSFVLPSHLKIDNMDSRFRGNDEGYMDSRGADKS
                     APYRGNDDSLTRIQGDTYYLRRAVLLDDLSD"
BASE COUNT         1939 a         2968 c         3291 g         1864 t
ORIGIN      
        1 gaagtcatcc tccgtcgtct gtctggttaa ttttcaccta tgcgcagaga gcccttcacg
       61 gtcggaatca tccaggaagc ggtcgccgcg acgccggccg agacgctgga cagggcggtg
      121 gcccgggtcc gggaggccgc aggccgcggg gcgcaggtga tatgcctgca ggagatgttc
      181 aactcgcatt acttctgcac cagccagagc tgcgagcgat tcgatatcgc ggagcccatc
      241 cccggaccgg taactgaccg gatgcaggag gtcgcccgcg aactcgaggt cgtgatcatc
      301 gtcccgatct tcgagcgcca ggccgctggt ctgtatcgca actcggccgc cgtgatcgat
      361 gccgacggct cgctgcttgg tgtgtatcac aagatgcaca tccccgacga cccgctttac
      421 tacgagaagt attacttcac gccgggcgac gccaatcgca cttacgagaa ggaagatcat
      481 cccggggcaa gcggctttcg ggtgtggaag acgcgctatg ccgacatcgg cgtactgatc
      541 tgctgggatc agtggtatcc ggaggccgca cgcatcaccg cgctgcttgg cgccgacatc
      601 atcttctatc ccacggcgat tggctggcat cctgccgaga aggaggagtt cggaccgtcg
      661 cagctggacg catggcgcac ggcgcagcgg gcgcacgcaa ttgcgaatgg tgtgtatgtc
      721 gcatctccca atcgtgtggg attcgaggag gaggcaggca cggatggaat cgaattcttc
      781 ggccattcct ttgtctcgga tccgttcgga agagtgatcg ccgaggcagg tctggagccg
      841 actgtgctcg tagcgaagtg cgatcccgcg ctgatcgagt acacgaggcg caactggcca
      901 ttcctgcgtg acaggcgcat cgacgcatac tcacccattc tcaatcggta cctggggtga
      961 cgcgctggcg tatgccggcg gaatgggaac ggcacgacgc gacgtggatc gcatggccgc
     1021 accacgagcc tgactggccc ggaaaacttg aagctgtgcg ctgggcgtat gcagaaatag
     1081 cccgcgtgct cgcggcccac gagcgtgtcg agatactgtg tcacgacgag accgttcgcg
     1141 attctgctgc ggcaatgctg cgctcgcacg acgtcgcgat gcagcgcgtc aatctggtgc
     1201 tcgttccgac cgatcgcgtg tggctgcgtg attcgggacc gtcgttcgta tggaacgaga
     1261 acggcgaagt cgagctgatt gcatgggatt tcaccgcctg ggccaagtac acagacttcg
     1321 cgcgcgaccg gcgcgtcccg gacgcaatcc agaacatgac tggattcccg gagacaccgg
     1381 cgctacgtcc ggatgacccg cgcagacgat tggtgctgga aggcggtgga atcgaggtga
     1441 atgggcaggg gcgaatcatc gtcaccgagg aatggctgct gagcgatgtg caggtccgaa
     1501 atccgggcct cacgcgggcc ggctacgaag aggcgttctc gacctatctg ggctgtcatg
     1561 acacaatctg gctcgggaat ggttgtgccg gcgacgacac gcacgggcac atcgacgacg
     1621 tcgcgcgctt cgtgaacttc gacaccgtcg cgctggcgta cgaagctgat ccgtcagacg
     1681 cgaatcacgc gtcgtcggtg gacaacctgg aacggttgcg tctcgcggcg gaacggcagc
     1741 ctttgaacgt cgtgctgctg ccgtatccgc gtccgctcat catggatggg caacggctac
     1801 cggcgagcta cgcgaatttc tacatcgcga acgacgtggt cgtcgtaccg acattcaacg
     1861 acgcgaatga ccgcgttgcc ctcgacatca ttgccaggat gtttcccgat cgcagcgtga
     1921 tcggaataca tgcagtggat cttgtgtggg ggatgggaac gcttcactgt ctcacgcagc
     1981 aacaaccggc gatggcgatc gattatcgcg gcccgtaatc gcggcacaca acaatggcag
     2041 acgagcgaca ggatggagaa gcagctcacc gtcatctatg acggtcattg cggcgtttgc
     2101 acgcggctcg cgaaccgggt cgcaaggctc gacacacacg gtgttctcga ggtcgtaccg
     2161 tcgcagaagg caggggtccg tgagcgattt ccgtggatca gcgcgagcgc gtacgacgaa
     2221 tctcttcagg tagttcgcgc gtccgacggc cggacctggg aaggggcggc ggcagtcgaa
     2281 gaggtgatca ggacgttgcg cgccgggtgg gttgtgtcgt ggctattccg gataccgttc
     2341 gcgcgacgga tcgcggaacg cggataccgg tggttcgccg atcatcgtgg cgagctgggc
     2401 tgtggcgatc actgccaggt tcacagcagt gttcacaacg gtgttcacaa cggtgttcac
     2461 acagcttcac cagcggtggg aacgaaaaac tcgtagttcc cgcgtccccg tgccttcgct
     2521 gcgtacatcg cggagtccgc gttgtggagc agggcgtcgg gatccaccac tgttggagat
     2581 tcgcggctcg tgtcgccgag cgatgcgcaa acgattccga tgctggcgcc tacgaccacg
     2641 tcacggtgat cgattctgat cggtccgcgc accaggtgta atactcgctt cgctaccatg
     2701 cgaacttcgt ccgcatcccg caagcgctcc agcagaatgg cgaattcgtc gccgccgagt
     2761 cgtgcagcgg tatccgagcc gcgggtagca tcgcgcaagc ggtcggcgat cgccgcaagt
     2821 acacgatctc cggcatcatg tccaaagata tcgttgacgg ccttgaatcc atcgagatct
     2881 atgtagagaa cggcgaggcc gctgcgtcca tcatcggatc tggtgccgga ggttgtgcga
     2941 gcgatggctt cgacgatctt ggcgcggaag cgcgtacggt tcacgagtcc ggtgagcgtg
     3001 tcgtgatagg cccgatgcgt gagctccgct tcgagctgct tgcgctcgct gacgtcacga
     3061 ccgttgatga cgagtcccat gacgacggga tcgtcgagca gattggtaca gatcgcttcg
     3121 acccatcgct cgctgccatt ggcggcgcgg atgcgccact cgcacggacc gctcgcggtg
     3181 acttctccgt ctcctgcggc gatggcctgt gcgatgtcgg cctggacgac tgccatgtcg
     3241 tcagcgacga agaaatccca gaatgtgcgt ccaacgacct tccggggtgc gtgaccgaga
     3301 acacgggcga ccgcggggct ggcctcacgc accgttccgt ccgcttcgag gaccagcacc
     3361 atgtcggagg aatgctggac cagggcgcgg aagtgtgcct cgcgcgcgag gcgctcgcgg
     3421 acgagctcgg cgtttcttcg ctgggccgcg acctggcgga cgatcacgat cgcagtcacc
     3481 accatcgcac cgacgacaat cgtcgtaacg gggaagttgc cggcgaagga cgacgggtga
     3541 ccgctcgaca acgccgctgc agcagcgcgg gcctcgcttc gaaacgcctc gacaatcagc
     3601 gttgcgtaga tggaagctat ggccaggtac ggaatgaggc tctgcggatt ggtgcgctgc
     3661 tcgtgcgacg tgatgtgtat ggactcggaa tccgactgca cgttctggca ctgggcgaat
     3721 actgccgccg tcgccatcca tgcgacaatc gcccacgcga cgtagaagag ccgcccaccc
     3781 tgagactcgt gtgcgatgta ggcccacatg tacagcagat cggcggctgt attgaggaga
     3841 atcgtggcgg cgatgatgcg gatggacagg aggctgccct gcagcgggcg ccgaagcagc
     3901 agcacgacgg cggcgaacag cagtacgacg tcggcgaccg ggtatgccag cgcatttatg
     3961 gacgtgtgcc agtccgatcc agccgcgacg agcgccgcgc gtagcagcag atgccatgta
     4021 agaagggcgg cgacaccggc gacgatcgcg ccgtcgaacc agaatgtcga ccggtccctg
     4081 ctatccatcc ggcggacggg gaacgtgacg agcgccgcaa gaaggaacac gtcgtacgcg
     4141 gcagcggtca gttgaagcgc gagcgggccg gcggcggcac ttcccgatgc cagccgataa
     4201 acccatgctg tgctgaccac gccggttgcg atcagtgcga tgccaaagaa aacccatgcc
     4261 cgtcgcgtgg ccctgtcggc gatgcgcgtg gacacaatgc cactgagggc ggcaccgagt
     4321 atcgagaggg ctgccagcag cgcctgggtg acgatcggga tgcgtggagc ggcattgcct
     4381 cccaagccgg cgaaaccgac ccatgcgaga tatccggcga agcacgcggt ccccagcagg
     4441 aagaggctga tttcccaaac ggaggcggtc tcacgaccgg cctgctgtgg aagctgctgc
     4501 ggaagctgct gcggaagctg cgccggaatc ggcagggtaa tgtgcgctgt gggcgtacgc
     4561 atctggatta cagaggctcg gtggcgctgc tgcgcaggtc ctgccgattg gcgggaccat
     4621 ctacgatgcg cggaagtgac gctgacttca ttggaagtgt gcggcggctg gcatgcggcc
     4681 agtcgttgcg agaactctgt ggatggctcc gaatcaataa atacgactcg ggcgtggaca
     4741 tcgtaaccgg atatttcaag ctggggcggc aggagtcgaa cctgcaactt cccgagtaac
     4801 agtcgggtgg tctgccaatt gacctacacc ccatcggcga ttgtcagagt ttcggcaatc
     4861 cgtgacgagt tctaaacaga aagccctcct gagcagcggc tcagaagggc gaatgtgcaa
     4921 ccggtatgtc tgctgtcaga tcatccgcgc aacacgatcg cccctctcaa gcagtttcga
     4981 ttgagattgc atgggagcac atcgtttgcg cgattggatg actgcatgca gttacgatac
     5041 agctcatcgg tctcgcgcgc aaggatgaag ttgcatgtga gcttgcgtgc gggaatgtct
     5101 gcgatgtcgc gtgcggaaaa ttgcacgtga tcttgtgtgt gaatctgcat atgcgactgg
     5161 tgattcacga cagcggagtc agatgcagcc gtttcgcaag ctcgattgcg tcagccggga
     5221 gaatttcggg agcgaacgat tccggcaccg cgcgatcggg atctttcagt ccgttgccgg
     5281 tgagcacaca gacagcgcgc attcctgcat caacgcgtcc gttgcgcaca gcgattctga
     5341 gcgcggcgat tcccgcggcg gacgcaggct cgcagaatat gccttccagt tcggcaacct
     5401 tgtggtacga ctcgagaatc gcgtcgtcgg tgactgcgct gaactcaccg cctgacgacg
     5461 tcactgcgtt gaccgccgat gtccagctgg ccggattgcc gattcgtatc gcggtcgcaa
     5521 cggtttccgg gttcgctacg ggtgcgccgc gaaccaatgg tgctgcgccg gctgcctgcg
     5581 ctccgatgaa caccggcatg cgcgtacttc gattcgcatt ccgatagatg cggaatccct
     5641 ccgaatacgc ggtgacgtta ccaccgttgc ccacgggcaa tgcgacaact tcgggtgcgt
     5701 cgccgagtgc gtcgcacact tcgaacgcag cagtcgtctg gccagctatg cgatgtggat
     5761 tgaccgagtt gacgagtgcg acgcggtagt cacgggcgag atcccgcgcg acggacagcg
     5821 cctcgtcgaa gtttccgtcg agcatgataa ccgtggcgcc ggccatgata gcctgcgcga
     5881 gcttgccgcg tgcaaccttt cccgcgggca gcaacactac agctgcgatc cccgcgcgtg
     5941 ccgcgtaagc cgcggcactt gccgacgtgt tgccagtgga ggcacagatt atcgtcgtcg
     6001 agccagcctc gatcgccttg gcgacggcga ccaccattcc gcgatccttg aatgatccgg
     6061 ttggattggc accttcatac ttgaggtgca gatcatccac accgacccac tttgccaggc
     6121 gcggaaccgg gtacagcggt gtgtcgccct ccgcgagcga gagagccgga gtcgcggcgg
     6181 taagtgggag gaattccgca tagcgggcga gcacgcctcg cgccgcgcgc ggctcggcgt
     6241 cgagccctgt agcatctgat ggcattacga gtggatatat caactccgtg ccattcccgc
     6301 cagctcccga ggcaccaggt ccggttgcgt cacattctgc tcgcgctgag ttgcggccga
     6361 cagatccggt cgcagtgagg ccgcatcgcg aaggtagatc ggaaccagtg ctggctggga
     6421 cgcgcggcgg tcgacgtgca gcagcacgcg gagacagcgg ggttgagcat ccggaacatc
     6481 gatctcggac gcgcacagca ttggaacgtc gttccaccca aggtcccggg cggcggtggc
     6541 gggaaacgct gaacgcagat cggtcgtcgc ggtaaacacc gcactgacga tgtcgctctt
     6601 cctgatgtcg ttgtgcgcca tcaggatggt aagaagctcg cgtatggcgt cgtggacgag
     6661 cagctgattg tcgacagcga cggtcgttgc accgcggacc gctctcactc tccatgcatc
     6721 cagatcctgt gcgatcacca tcggacgacc tcaccagcca gcttgctcgc ccgtggcata
     6781 cgagacacgc cgctgtcgta tgccggatgt gcgaggatga gaaagtgagt cacattgtcg
     6841 ggcacgtcct gaatgtcagc ttcgagaacg acgagaccgt agcgctcggc ggcgatgcgg
     6901 cctgctatgg ccgcggcgtt gcgtgcgcca cgcatcacga ggtcgcgcgc ggcaccggcg
     6961 gtgtcgtagc ctggtgtcgg aacgattttg ggatgtgtcg ccaggaacct gccgcactgt
     7021 gcaagcgcga cgggatggct gctgacggat cttatgtcgt ccatttgact tccgggaagg
     7081 gcaagcaggt gatgtcgcac gacgacatgg gtgtcgccga tcacaacgag tccgtacggt
     7141 gagcttctgg cgagccgaac tgcagcacaa ccggttgcga tctcgcccac gacggaattc
     7201 cagaccggga tgattccgaa atccgcgatc tcccacgcga cgtcggcaac tacgtgctcg
     7261 aacgacgcgg acggcgtcgg tacggcacca ccgtgccagc gttgcgcgat ggcctgatct
     7321 ccgtacgcgc cgagctcgcc ctgaaacgcg acacgggtcc tgtcatccga gtgctcgcgc
     7381 gccggcgaga gctgcgccgt ggagcgtcgc atcgcgatca tgcggccacc accgcgagcg
     7441 actcatctgc acgggcctcc tcagcgtgcg tgtgcacgtc gtgcgagctt gcaggacgga
     7501 tcgagtcggc gatgtcgcga gaggatgcgg atgcgacgat gttcggcaga agcggagcag
     7561 gggctggcgt ccggacggtt cggttgctcg cggtcgcgat gagcgagatg ctgtgcatga
     7621 gatcggtgaa ttgcgcgaat gtcagctgct gatcggcatc ggagcgcgct acggctggat
     7681 cggggtggac ttcgacgatc aacccgtcgg caccggccgc gatcgcggcg agcgcgagcg
     7741 gcagtacgag atccgcacga cctccagcgt gactcgggtc gacgatcacg gggagatggg
     7801 tctctgcttt caacacgggg atcgcggaga tgtcgagcgt gttgcgggtg attgtctcga
     7861 acgttcggat gccgcgctcg cacagtatca cgcgctcgtt cccattcgcc atgacgtact
     7921 cggcagccag caggagctcc gaaatgcgcg cggatgcgcc acgtttcagg agtaccggct
     7981 ttccagcgcg gccgagctcg gcgagcagcg ggaaattctg catgttgcgt gcaccgacct
     8041 gaattacgtc ggcgatctgt gcaacgcgct ggacctgccg ggtgtccatc acttctgtaa
     8101 cgatcggcat ccccgtctgc tcacggacgg cggcaagcag cagaagtcct tcctcgccaa
     8161 gcccctggaa tgcgtaggga gaagtgcgcg gcttgaatgc gccgccgcgc aacagcgttc
     8221 cgcctgctga ctgcacgtgc cgcgcactgg cgaggagcat gtcgtatccc tcgaccgagc
     8281 acgggccggc tgcgatcact acatcgcgac cgccgataac cagtgtggaa gtcacgtgaa
     8341 ccggtctggt cgacgagctc gtgttgccgg cggttcttgg atgggcggct aacgcgtatt
     8401 caggagctga ttgggacatc tggagcctcg gtggatcggt cggaaaacaa aaaagccctg
     8461 aggattgaat ccccagggcg tgatatcgag agcgctgctt cggtacttcc agctttgctg
     8521 tcctaaccta gcaaagtacc tgcgtgcgac gattacaccc ctggggaagt ccccaaaagc
     8581 tggcgtaata ataaaatcgc gtggcgggtg aagagtggcg catcggaaac aaatattgcg
     8641 gtgggcgtgt caattgcgca agcggggatt ttatgcctgc gttgttttcg gtccggccag
     8701 gcaggcacgc gcgagaagca cgaggacgat gatgtagaag atatccttga cgcccgtcgt
     8761 gatgctggcc atggagctcg cctgtcgcag tcgggggatc accgcggtgc gaatctggaa
     8821 ataatcgagc acgaaagaca cggacatgat cgccagcgtc agcgccagca gcccgcagat
     8881 gatcccgagt actcgccgga cgcgccggtc gtcgacgatg atggtcacgg ctatcgcaag
     8941 caggatcccg accagcggga caagcagcag attgctgacc tggccgacgg cgctccaccg
     9001 ccagcgctcc tcactgaagc gaagcggcat gagcggcatg atcgcgtcaa tgagaggaac
     9061 ggcgaataga gacgcagcca gcaagtatcc ggcgcgggca agtggtctgt tctgttccat
     9121 gcggagatca ggggaaaagt tcaagcgaaa gtactgtccg gatcgccgct ccacaagcat
     9181 gcgttgctgg ccatgccaga ccgatcaggg tatcggcgcg agctgctgat aaacaatcgt
     9241 tatcgtattt ccggtagttg ccgcggtcac cttggtgggc cacgcgccgg tcagacgggt
     9301 gcgcgaattg gcgccgccac caatgcgctc gatctcgaca gtcttgcgct gtacagtgtc
     9361 cttgtagccg gagttgtcag ccttcatcca tgcctcgatc gcagatacca gcgcaggatc
     9421 ggtcgtggtc agcatgatgc tgccctggtc tgcggacgct atctgcctgg acgggagatt
     9481 cggagtggaa tcctgatgga gaacgaccgc gttgccgggg agattcacga ccgctgtcgc
     9541 ggttccggcc acggttccgg cgatggacac gcggtaatcg ctggacgtcg tgtcctgcgc
     9601 cggagcgtgt agcgggataa tcgtgagtgc cgtcgccagc atcgtgatgg ccgccagacg
     9661 catgttcaag gttcgcgggc tcatggcgtt cctccggaga gagtttcagc ctgtaagggc
     9721 aaacgtcagg ccgctcgacc gctgggacgt cgtgcacgcg gtcgtcaaaa ccgcgaaagc
     9781 tggggctcag agactcgtca ttcccgcgaa cgcgggaact cgcatatccg tcattcccgc
     9841 gaaagcggga atccatctgt tgccgaccag ctttgtgctg ccatcgcact tgaagatcga
     9901 taacatggat tcccgctttc gcgggaatga cgagggatac atggattccc gaggcgcgga
     9961 taaatccgcg ccctaccgcg ggaatgacga ctccttgacc cgcatacagg gagacaccta
    10021 ctatttacgc cgcgctgtcc ttctcgatga cctgtccgac aa
//
LOCUS       DATIMD010000203         2539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3828527, whole genome shotgun sequence.
ACCESSION   DATIMD010000203 DATIMD010000000
VERSION     DATIMD010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3828527"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..979
                     /locus_tag="VLI40_04565"
     CDS             <1..979
                     /locus_tag="VLI40_04565"
                     /inference="COORDINATES: protein motif:HMM:NF019896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-Ala-D-Ala carboxypeptidase family
                     metallohydrolase"
                     /protein_id="HSU96477.1"
                     /translation="AEQVFEKLSSAFVVLLGCAWAFSIASARATGDKVNIVTPASAAV
                     VNGLSDANAPSAAYVTDAVNRKVVATIEHDATGESGKLRAEIQDASEKPGVIKAVITA
                     GGALKRVADFALITPRSASDVSRGRLGLYYIGNWPRATTTKGGRVEYRPPSGFIEVTP
                     SNENTRLSQHFEIKDFLTHDQGNVWPKYVVVSMKLVDKLELVLDDLRAHGVNPEGVHV
                     MSGFRTPQYNRTGGDPSGRATLSRHMYGDAADIYIDNNGSGEMSDLNHDGRVDIADAR
                     VILASVDRVEREHPSLVGGCGIYVGNGSHGPFVHIDTRGYPARWTGTGD"
     gene            992..1456
                     /locus_tag="VLI40_04570"
     CDS             992..1456
                     /locus_tag="VLI40_04570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96478.1"
                     /translation="MIQRPVPRGNAVDAASAAAQSADEQRGRTPASKPRVRVRAADLE
                     PYIGLKYLSRLFKLMAIVLILLLVSEVITGLVASGLDALPTLLGEVSRLVVFAGLLWG
                     SGDLAILLIDMGHDLRATRILIGRQLAHTMDEHPAQIDPGLSHPLGEQDAPV"
     gene            1512..1664
                     /locus_tag="VLI40_04575"
     CDS             1512..1664
                     /locus_tag="VLI40_04575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0937 family membrane protein"
                     /protein_id="HSU96479.1"
                     /translation="MLWTIALILFVLWLLGFLVFPVAGGLIHILLVLAIIVVLYRLIT
                     GQRPVV"
     gene            1937..2521
                     /locus_tag="VLI40_04580"
     CDS             1937..2521
                     /locus_tag="VLI40_04580"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HSU96480.1"
                     /translation="MQALLVVDVQNEFSAVGLRAVPNHEEALRHVRARVREARMQGRP
                     IAWVRHHNKPTESRAFVPGSWGAELSDALGPDSGHGPEKLFEKDVFGAFTGTELESWL
                     RANAVTEVMIVGFYTHMCVSTSAREALVRGFDVWIDADATGAADLDDEVLGRQSAAEV
                     RRSALLHLAHMGARMTRPDYTSLDESPATTDSVA"
BASE COUNT          495 a          726 c          819 g          499 t
ORIGIN      
        1 cgccgaacag gtgttcgaaa agctctcaag cgcattcgta gtactgcttg gatgcgcctg
       61 ggctttctcc atagcatcag cacgggcgac tggcgacaaa gttaacatcg tgactccggc
      121 gtcggccgcc gtcgtgaacg gactgagcga cgcaaatgcg ccaagcgcgg catacgtgac
      181 ggatgccgtc aacagaaagg tcgttgcaac catcgagcac gatgcgacag gcgagagcgg
      241 caagctgcgc gctgaaatcc aggacgcgag cgagaagcct ggcgtaataa aggccgtgat
      301 cacggctggc ggagcactca agcgagtcgc cgatttcgcg ctcatcacgc ctcgatccgc
      361 gagcgacgtg tcccgcggcc ggctcggatt gtactacatc ggcaactggc cgcgagcaac
      421 caccaccaag ggtggccgcg tcgaataccg gccgccgagc ggcttcatcg aggtaacgcc
      481 atcaaacgaa aacacgagac tttcacaaca cttcgagatc aaggatttcc tcactcacga
      541 tcagggcaac gtgtggccca agtacgtggt ggtcagcatg aaattggtgg acaagctcga
      601 gctggtactg gacgacctcc gcgcgcatgg cgtgaatcct gaaggtgttc atgtgatgag
      661 cggatttcgc actccacaat acaaccgcac cggtggcgat ccgagcgggc gggcgacgct
      721 cagccggcac atgtacggcg acgctgctga catctacatc gacaacaacg gcagtggcga
      781 gatgagcgac ctcaatcacg acggccgggt cgacattgct gacgcgcgcg tgatacttgc
      841 ttctgtcgat cgcgtggaac gcgaacaccc atcgctggtc ggaggatgcg ggatctatgt
      901 cgggaacggg tcgcatggcc cgttcgtgca catcgatacg cgcggttatc cggcacgatg
      961 gaccggaacg ggagactgag caatggccga cgtgatacag agaccggttc cgcgcggaaa
     1021 cgcggtcgat gcagccagcg ccgcagcgca atcggctgac gagcagcgcg gacggacgcc
     1081 agcgagcaag ccgagggtcc gggtgcgtgc ggcggacctc gagccctaca tcgggctcaa
     1141 gtatctatcg cggctgttca agttgatggc gatcgtcctc atactgttgc tggtatcgga
     1201 ggtcattacc gggctcgtcg cgagcggtct tgatgccctt ccgacgctat tgggcgaggt
     1261 gagccgcctg gtggtatttg ccggcctcct gtggggcagc ggggatctcg ccatcctgct
     1321 catcgacatg ggccacgatc ttcgtgccac gcggatcctt atcggtcgac agctcgcgca
     1381 tacgatggac gagcatccgg cgcaaatcga cccggggctc tcgcatccac tcggtgagca
     1441 ggacgcgccg gtatgactgt tgcgcttgca gggcatcagc aggctcacat ttttccggac
     1501 gaggctaaaa gatgctctgg acgattgctc tgatcttatt cgtactgtgg ctgctcggat
     1561 tcctggtgtt tccggttgct ggcggcctca tccacattct gctcgttctg gcgatcatcg
     1621 tcgttctgta tcgtctgatt accggacagc gtcctgtggt gtagtgcggc aggcctcacg
     1681 gccgatctcg cagtacgcct ctctgcaacc cgaggcggtc gggcgcaatc cggaaccatc
     1741 tcggattgcg cccgtttttg ttgtatctcg ctaccaccca actcctttaa tacgggccgg
     1801 tgtcgaaata tcggtaattc cgatgaatgc catcgtcgtt cttgcattgc ttgataaggc
     1861 acgaatttga cgaagcgcga ccgggtgcag cggtgttggg atcgcgtggc gaatcagctg
     1921 ttggagacgg atgatcatgc aggcattact ggtagtcgac gtgcagaacg aattttccgc
     1981 cgtggggctt cgcgcggtcc cgaatcacga agaggcgttg cggcacgttc gggcccgggt
     2041 tcgagaggcg aggatgcagg ggcgtccgat cgcgtgggtt cggcaccata acaagccgac
     2101 cgagtcgcgg gcgttcgttc ccggttcgtg gggcgccgag ctttcggacg cgctcgggcc
     2161 tgactcaggg cacgggcccg aaaagttgtt cgagaaggac gtcttcggtg cgttcacggg
     2221 aaccgagctg gaatcatggc tgagagccaa cgcggtcacc gaagtgatga tcgttggctt
     2281 ctacacccac atgtgcgtct cgacttctgc gcgcgaagcg ctggttcggg ggttcgatgt
     2341 atggatcgat gcagacgcca ccggcgccgc ggatctggac gatgaagtgc taggtcgtca
     2401 gagtgctgcc gaagtgcgca ggtcggcgct actgcacctg gcacatatgg gcgcgaggat
     2461 gacgcgcccg gattacactt cgctggatga atcccctgcg acgacagata gtgttgcgtg
     2521 actgacggtc gggcggcac
//
LOCUS       DATIMD010000204         2835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1809786, whole genome shotgun sequence.
ACCESSION   DATIMD010000204 DATIMD010000000
VERSION     DATIMD010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2835
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1809786"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..822)
                     /locus_tag="VLI40_04585"
     CDS             complement(<1..822)
                     /locus_tag="VLI40_04585"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSU96481.1"
                     /translation="MVANGDAAGGRKLADSVANAAPSGTAAYAEGLYWRATLAANARD
                     SEQAYRQIIVDYPLSGRVADALLRIGQLESARGENAAALQHFQRLVLEHPRSPLRAEA
                     SYWVARLYFDANDPSHACAANSDALASAPASNVELKNRIDFQQQRCRGVTLATNAPAA
                     AAAPASAPVKNLPAASAPKPPVKPAPRVAAAASEVAKESTKEAAKEAAGNNATERHDT
                     IAKRAAQTSAPAAPSETASVTAATPSASATSGGDSNTRSGVVSRPPTKEEVDRALA"
     gene            complement(1038..2096)
                     /gene="holA"
                     /locus_tag="VLI40_04590"
     CDS             complement(1038..2096)
                     /gene="holA"
                     /locus_tag="VLI40_04590"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HSU96482.1"
                     /translation="MATDAALKTLRDAVKKRQFDGAYYVYGDDEYQKNEAVKQLVAAA
                     VDPATRDFNLDTRRAADLDAESLGSLLDTPPMMAERRVAIIREVGALKKDARNALDRY
                     LKHPSHETLVLLVAAPGAKADKALQMSTTPMEFSPLDGSRVSKWIMHHAKSELGVEIT
                     ESAADLLHEAVGNDLYQLASELDKLASYTSGAPITEDAIGAAVGIRRGETVADFLDKV
                     LQRDATGALGLIPHVLAQPKTSGVSVVMALSTQMLALAWGRCRLDSGLPAGRLEGEYF
                     QLLKSTGAYPARPWNGAARAWAMAAREWKTSECNKAVTALLAADVALKESRVSSENQI
                     LATTVLAICAASGRRRAA"
     gene            complement(2125..2637)
                     /locus_tag="VLI40_04595"
     CDS             complement(2125..2637)
                     /locus_tag="VLI40_04595"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HSU96483.1"
                     /translation="MRCSEFKDLHCSFVDDTLAGVELVRMQRHIAECADCARLDASVR
                     RSLMLVRNLPPIEPSADFAFRLDARLRECRLNQASVNGGRFRTVAAIGAIASLIMLGY
                     VAETMRVADQRHALPDIVLPPAVAMATPPDTTSVPSIVASVSAGMPIWPAALLVEQGG
                     LQTVSYTQPR"
BASE COUNT          522 a          929 c          835 g          549 t
ORIGIN      
        1 tgccagggcg cgatcgacct cttccttggt tggaggacga gaaacaacgc cactgcgggt
       61 gttcgaatcg ccaccggacg tcgcgctggc gctcggggtc gctgcagtta cgctcgcagt
      121 ttcgctgggc gcagccggcg cactcgtctg cgctgcgcgt ttcgcgatcg tatcgtggcg
      181 ctccgtagcg ttattcccag cggcttcctt tgctgcttcc ttcgtagact ctttagcaac
      241 ttcgcttgca gcagccgcga ctctcggcgc aggcttgacc ggtggcttcg gtgcgctcgc
      301 agccggaagg ttcttcactg gagcagatgc tggcgccgct gccgctgcag gcgcattcgt
      361 cgcgagcgtt acaccccggc aacgctgctg ctgaaaatcg atgcgattct tcagctcgac
      421 gttggatgcc ggcgcactcg ccagtgcgtc actgttggcc gcgcacgcat gcgacggatc
      481 attcgcgtcg aagtacagcc gcgccaccca gtagctcgct tccgcgcgca acggactgcg
      541 tggatgctcc agcacaagtc gctgaaagtg ttgcagcgca gcggcattct cgccgcgcgc
      601 cgactccagt tgaccgatcc gcagcagcgc atccgccacc cggcccgaga gcggataatc
      661 cacaatgatc tgacggtacg cctgctcgga atcccgcgcg ttcgcggcca gcgtggcgcg
      721 ccagtacagc ccctcggcgt atgccgcggt tccggacggc gcggcattgg cgaccgagtc
      781 ggccagcttc cgcccacccg cggcatcacc gttcgccacc atctgctgag cccggaggta
      841 cagcgtcgag tcccgggccg attgcgctcc agccagagcc ggtagtacca gacaggcctg
      901 tagagcgcga acgcacgcgc gcctcaaaag cgacgcctcg agcctcgcga acgaagcccc
      961 gtaaagattg atcgaaacca ttgttttgct cagttgtcgc aagaatgctg ctgatgtggc
     1021 ttgttactgt cgcgaatcta tgccgctcgg cgacgtccag atgctgcaca gatggcaaga
     1081 accgtcgtcg caaggatctg gttttcggat gacacacgtg actccttcaa cgcaacgtcc
     1141 gccgccagaa gcgcggtcac cgccttgttg cactcggatg tcttccactc ccgagccgcc
     1201 atcgcccagg cgcgcgcagc gccgttccac ggtcgggcag ggtatgctcc ggtcgacttg
     1261 agcagctgaa aatactcgcc ttccaggcgc cccgccggca atccggagtc cagccggcac
     1321 cggccccagg caagtgccag catctgcgtg gacagcgcca tcacgacgct caccccgctc
     1381 gtcttgggct gcgccagaac gtgcgggatc agcccgagtg ccccggtcgc gtcacgctgc
     1441 aacaccttgt cgaggaaatc ggcaaccgtt tctccgcgcc ggattccaac cgctgcacca
     1501 atcgcatcct cggtgatcgg tgcgccactg gtatagctgg caagcttgtc cagctccgac
     1561 gccagttgat acagatcgtt tccgacggct tcatgaagca aatcagccgc tgattcagtt
     1621 atctcgactc caagctccga cttcgcatgg tgcatgatcc acttcgaaac gcgactacca
     1681 tcgagtgggc tgaattccat cggcgttgtc gacatctgca gagctttgtc ggccttggca
     1741 ccgggtgctg ctacgagcag taccagtgtt tcgtgcgacg gatgcttgag atatctgtcc
     1801 agtgcgttgc gcgcgtcctt cttgagcgct ccgacctcgc gaattatcgc gaccctgcgc
     1861 tccgccatca tcggaggcgt gtcgagcagc gagcccagcg attcggcgtc cagatccgca
     1921 gcgcggcgcg tgtccagatt gaagtcgcgc gtggcaggat cgaccgcggc ggcgacgagt
     1981 tgcttcaccg cttcgttctt ctgatactcg tcgtcgccgt aaacgtaata cgccccgtca
     2041 aactgccgtt ttttcacggc gtcacggagc gtcttgaggg cagcgtcggt tgccatgccc
     2101 aaatctaatt tcgcggagcg aaaactatcg cggttgcgtg tagctcacgg tctgcagacc
     2161 gccctgttcc accagcagcg cagccggcca gatcggcatt cctgcagata ccgatgcgac
     2221 tatcgaaggc actgacgtgg tgtcaggtgg agttgccatt gccaccgcag gtggtagcac
     2281 gatgtctggc agcgcgtgcc tctgatctgc aaccctcatc gtctccgcca catatcccaa
     2341 cattatcagc gacgcgattg caccgatcgc ggcgaccgtt cgaaatcggc caccgtttac
     2401 gctcgcctgg ttcagtcgac attcacgaag ccgagcgtcg agccggaatg caaagtccgc
     2461 cgacggctcg attggcggaa gattgcgcac gagcatgagc gagcgccgca cactggcgtc
     2521 aaggcgagca cagtcggcgc actcagcgat atgacgctgc atgcgtacca gctcgactcc
     2581 ggcgagggtg tcgtctacga aggaacagtg taggtctttg aactctgaac agcgcatcga
     2641 ataaggatac cgggcggcgt caataatagt tccccccaag cgaaccggac aggtcggcta
     2701 accatggtgc cccatggcga tccgacccgt agggcgcgga ttcatccgcg cctcgggaat
     2761 ccatgttcag aagagccgtc attcccgcga aagcgggccc agagactcgt cattcccgcg
     2821 aaagcgggaa tacat
//
LOCUS       DATIMD010000205         2072 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2385062, whole genome shotgun sequence.
ACCESSION   DATIMD010000205 DATIMD010000000
VERSION     DATIMD010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2072
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2385062"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(15..581)
                     /locus_tag="VLI40_04600"
     CDS             complement(15..581)
                     /locus_tag="VLI40_04600"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HSU96484.1"
                     /translation="MANTDSRVTIHMVASLDGFIARKDGSVDWLETADEYADGETMDP
                     ASIEAFLETIDCYVMGSRTYETALNFETKGFGWAYGDKPTFVLTHRDLPRTRDSVELY
                     TGDLAQLVNGRLRQTFRSIWFVGGGVLSAECLRLGLADEVRYSIVPVAIGDGVSFFET
                     LDKDVGLHLAEVKAYRNGMVELRYEVRR"
     gene            complement(616..912)
                     /locus_tag="VLI40_04605"
     CDS             complement(616..912)
                     /locus_tag="VLI40_04605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96485.1"
                     /translation="MGFQFAGGYAQRTDGYFHATSRYDVTLRFSQIANLVLNGFLAEN
                     IVAELQLALIDPATHDGRTLAVTVEGIRGFGCDLAFDCTAMEVVAVLGPYLPAE"
     gene            complement(947..1726)
                     /locus_tag="VLI40_04610"
     CDS             complement(947..1726)
                     /locus_tag="VLI40_04610"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSU96486.1"
                     /translation="MERVALFFAAIGVSALPITAHPQQSTGGSIVGVVRDTDGRPLPA
                     ANVSLHPGDRRTQTDSSGQFALTGLGDNTYTVRARKLGFRPDGWDVRLDKGGRVEVKF
                     ALEAAPPLLDTVKVAASQPCPTQSIRAFLCRRQRGGGVFLDYTDIDDKEKNFVGELFY
                     DVPDMLVDFKISASGPNYFIRSKRSGCISSIVDGRPASMAYPIPANTSRLVALEIYTR
                     PDSVPHELREYLWPRSGDRARTGRCTVIVYWTNRGALEVTR"
     gene            1825..>2072
                     /locus_tag="VLI40_04615"
     CDS             1825..>2072
                     /locus_tag="VLI40_04615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96487.1"
                     /translation="MVERLAHSPQLSIGAREWFAAQPLFLRRLQPVRPSSQPIRLGGA
                     TRLPHEIRVVAQCFLSRARIRNLCFLSHCEGASIDRLSL"
BASE COUNT          387 a          642 c          628 g          415 t
ORIGIN      
        1 gaggccatgc aatactatcg tcggacctcg tagcgaagtt ccaccatgcc attccgatag
       61 gcttttacct ccgccaagtg caggccgacg tccttgtcga gcgtctcgaa gaacgagacg
      121 ccgtcgccga tcgcgacggg cacgatcgaa tagcgaactt cgtcggcgag cccaagacga
      181 aggcattcgg cggagagcac tcctcctccg acgaaccaga tgctgcggaa ggtctgtcgc
      241 aggcgtccat tcacaagctg cgcgagatct cccgtgtaga gctcgacgga gtcccgcgtg
      301 cgcggcaggt cacgatgcgt gagaacgaag gttggtttat cgccgtaggc ccagccgaac
      361 cctttggttt cgaagttcag cgcggtctca tacgttcgtg aacccatgac gtagcagtcg
      421 atcgtctcga gaaacgcttc gatggacgct gggtccatcg tctcgccgtc cgcatactcg
      481 tccgccgtct cgagccagtc gacgctgccg tccttgcgcg cgatgaagcc gtcgaggctc
      541 gccaccatgt ggatcgtgac gcgggaatcg gtgttcgcca tcctgtcggc tcactgtgag
      601 gagattcgct aaggtctatt cggccggaag atatggtccc agcacagcaa ctacctccat
      661 ggccgtgcag tcaaaggcga ggtcacagcc aaaaccccgg atgccttcaa ccgtgaccgc
      721 cagggtgcgt ccgtcgtgtg tcgccggatc gatcaacgcg agctgaagct cggcgacaat
      781 gttttcggcg agaaaaccat tcagcaccag gttcgcgatc tgcgagaagc gcaacgtcac
      841 gtcgtaccgc gaagtcgcgt ggaaatatcc gtctgtcctc tgcgcgtatc cgcccgcgaa
      901 ttgaaatccc accgttgagc gaaagcgaca gcttcccccc cgagccttac cgagtgacct
      961 cgagcgcgcc gcggttggtc cagtaaacaa tcaccgtgca tcgtccggtg cgggctcggt
     1021 cgccagatct cggccacaag tactctcgta gctcgtgcgg aacggaatcc ggtcgtgtgt
     1081 agatctcgag cgcaacgagt cggctggtgt tcgccggaat cggataggcc atactggccg
     1141 gtcttccatc cacaatggag ctgatgcacc cggaacgctt cgaccggatg aaatagttcg
     1201 gaccgctcgc cgaaatcttg aagtccacga gcatgtccgg gacgtcgtag aacaactctc
     1261 cgacgaagtt tttttctttg tcgtcgatat ccgtgtagtc gagaaacaca ccgccaccgc
     1321 gctgtcgcct gcagagaaac gcgcgaatgg actgcgtggg gcatggttgc gatgccgcca
     1381 ccttcacggt atcgagtagt ggcggcgccg cttcgagcgc gaacttcact tctacgcgcc
     1441 cgcctttgtc cagtcggacg tcccagccat cgggccgaaa gccgagcttt cgtgcacgca
     1501 cggtgtaggt gttgtcgcca aggccggtga gcgcgaattg cccggatgaa tcggtttgag
     1561 ttctccgatc tcccggatgc aggctgacgt ttgcggcggg caacggtcgg ccgtcggtgt
     1621 cccgcaccac gccgacgatc gatccgcccg tcgattgttg cggatgcgcc gtaatgggaa
     1681 gcgctgacac gccgatcgct gcgaagaaca gtgcgactcg ttccatgacc gtgctgaaag
     1741 gcgaagcccc atgctacgac gcccgcggag gcttggccag ttctcccggt gtaccgccga
     1801 cgcgagatcg gcgtcggaga gcgagtggtc gagcggcttg cccattcacc ccagttgtcg
     1861 attggcgcgc gtgaatggtt tgctgcgcag ccgttatttc ttcgccggtt gcagcccgtc
     1921 cgcccgagca gccagccgat ccgcctcggc ggtgcgaccc gtctgccgca tgagatccgc
     1981 gtagtcgcgc agtgtttctt gagcagggcg cggattcgta atctctgttt tctctcgcat
     2041 tgcgagggcg cgtcgataga tcggctcagc ct
//
LOCUS       DATIMD010000206         3269 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2964254, whole genome shotgun sequence.
ACCESSION   DATIMD010000206 DATIMD010000000
VERSION     DATIMD010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3269
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2964254"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1005
                     /locus_tag="VLI40_04620"
     CDS             <1..1005
                     /locus_tag="VLI40_04620"
                     /inference="COORDINATES: protein motif:HMM:NF027637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HSU96488.1"
                     /translation="GPYDRFAIMWGYTPITGATTPEQERPVLDSIARMQDSVPWYRFG
                     HLAESRADNPDPGDEVEAVGDADAVQSTGYGLRNIERTMPMLLRVTQKPGEDNSDLEE
                     IYGRLVDQWSDEMGHVANIIGGATAHVKYGSQAGAVYTPVSRERQLAAIQFLNAHVFH
                     TPTFFLDDAVTSRIEPNGSLSRINDAQARILHTLLDDWRVQRMIEISSRGSDVYTLPE
                     MLADVRHGIWTELGDRSVAIDVYRRNLQRSYLDQLDAKINGSHGDGFTIVLTPNPRSR
                     RPADSPASMADARAAMRAELVALRADIVAALPRAADAATRAHLEDAKVAIDRTLDPNR
                     "
     gene            complement(1031..1870)
                     /locus_tag="VLI40_04625"
     CDS             complement(1031..1870)
                     /locus_tag="VLI40_04625"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HSU96489.1"
                     /translation="MRDRHVGALFLIAVAFLSTIFQSHLAQAQASPDATVPRVYSASE
                     VDTHAKQIEGGSQPLYPDSLRPSGIDGKVLAQFVVDTTGLVDTTSILTEAYGQPLFAA
                     SVRQALATMHFTVAQKSGHKVAEEIEESFLFHKDAPAPVAQGNPISTLVDSMMRTEGG
                     YKYIGGSAAFASGSPAPAYPVALIRAHLAAVVYTTFVIDTTGRIDPKTFRVTSVKTWR
                     DGAAPFHDSTQDPDIDDVAPEQAFTQAVLAQVPHMRFIPAQANGRKTRQFVQQPFTFT
                     LLP"
     gene            complement(2003..2467)
                     /locus_tag="VLI40_04630"
     CDS             complement(2003..2467)
                     /locus_tag="VLI40_04630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96490.1"
                     /translation="MCRPAAMLLAPLIVACSSSSLTVPRPAPTFSVQSVSPEVAQSLP
                     RVTARGDVSSVVVAGVVVAPDPPCATTISADDALSGNTLTVRVITTVPGPGAGTCAVA
                     QDGPNYSYIERSLDVPSGSVRVVVKYVVTGGQTGSNASNTGTVVLDQNVTVP"
     gene            complement(2471..>3269)
                     /locus_tag="VLI40_04635"
     CDS             complement(2471..>3269)
                     /locus_tag="VLI40_04635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016453931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DbpA RNA binding domain-containing protein"
                     /protein_id="HSU96491.1"
                     /translation="LDIGHLSHVFNYDVPTSPDAYVHRIGRTGRAGREGVAITLAEPR
                     EHRFLRNIENITKQKIEIATVPTVADMRVRRVELTRATLQEILIGDQLDEYRGVVESL
                     ADGDYDVMDIAAAAVKMAHEASGNDKHEAEEEIPVQRPPAQRPSAANDRPRDRAEGRP
                     REDRPKREGKQPRTVAGSKRKPGWEVAKIYIGAGRKAKIRPGDIVGAIANELQLDSDV
                     IGAIEIYDRFSLVEVPDEIADDIVDTLRATHIKGKRVPIRRDKDVVV"
BASE COUNT          614 a          966 c         1019 g          670 t
ORIGIN      
        1 gggccgtacg acaggttcgc gataatgtgg ggctacactc ccatcactgg agcaacaacg
       61 ccggagcagg agcgtcccgt actcgactcg attgcgcgca tgcaggatag cgttccgtgg
      121 tacagattcg gtcatctcgc cgagtcacgc gcggacaatc cggatccggg cgatgaggtg
      181 gaggcggttg gcgacgccga cgcggtgcag tccaccggtt acgggctcag aaacatcgag
      241 cgcacgatgc ccatgctgtt gcgtgtgacg cagaagcctg gcgaggacaa ctccgacctg
      301 gaagagattt acggcaggct cgtggaccag tggtcggatg agatgggtca cgtcgcgaat
      361 atcataggcg gagcgacggc acacgtgaag tacggatcgc aagcgggtgc ggtgtacaca
      421 ccagtgtcgc gggagcgaca gcttgccgct attcagttcc tgaacgcgca cgtctttcac
      481 acgccgacgt tctttctgga tgatgccgtg acgagtcgca tagagccgaa cggatcactg
      541 tcgcggatca acgacgcgca ggcgcggata cttcacacgc tgctggatga ctggcgtgtg
      601 cagcgcatga tcgagatctc gtcgcgcggg agcgacgtgt acacgctgcc cgagatgctg
      661 gcggatgtcc gccacgggat ctggaccgag cttggagatc gcagcgtcgc tatcgacgtg
      721 tatcgtcgca acctgcagag atcgtatctg gatcagctcg atgccaagat caacggatcg
      781 catggagatg gattcaccat cgtgctgacg cccaatccac ggagccgccg tccagcggac
      841 agtccggcat cgatggcgga tgcgcgagcg gcgatgcggg cggagctggt ggcgttgcgt
      901 gctgatatcg tggctgcgtt accgcgtgcg gcggacgcgg cgacgcgtgc gcatctggag
      961 gatgcgaagg tcgcgatcga tcgaacgctg gatcccaatc ggtaagacgg gagtgcgttt
     1021 atcggtcgga tcacggtaat aaagtgaacg tgaacggctg ttggacgaac tgccgagttt
     1081 ttcggccgtt ggcttgcgcc ggaatgaaac gcatgtgcgg gacctgtgcc agcacggctt
     1141 gcgtgaatgc ctgttcgggc gcgacgtcat cgatgtcagg gtcttgcgtg gaatcatgaa
     1201 atggcgcggc accatctcgc cacgtcttca ccgaagtgac tctgaatgtc ttcggatcga
     1261 tccttcctgt tgtgtcaatc acaaacgtcg tatacacgac tgcggccaga tgcgcgcgta
     1321 tcagcgcaac gggatatgct ggcgccggac tcccgctggc gaacgcggcg gagccaccga
     1381 tgtacttgta cccgccttcg gtcctcatca tcgaatccac gagtgtcgaa atcggattgc
     1441 cctgagcaac tggtgcggga gcgtctttat ggaagagaaa tgactcttcg atttcttcgg
     1501 cgaccttgtg cccggacttc tgtgcaacgg taaagtgcat cgttgccagt gcctgtcgca
     1561 ctgacgctgc aaagagtggc tgcccgtacg cttccgtcag gattgaagtc gtgtccacga
     1621 gccctgttgt atcgactaca aattgcgcca acaccttgcc gtctattccg gacgggcgga
     1681 gcgaatccgg atacagcggc tgcgatccgc cttcgatttg cttcgcatga gtatcgactt
     1741 cgctcgcgga atagacgcgc ggcaccgtgg cgtcggggct cgcctgtgcc tgcgcaagat
     1801 gcgactggaa gatcgtactc aagaacgcaa cggcgatcag gaacagggct ccgacatgcc
     1861 ggtctctcat cagtgattcc agaggtgggt tcaggaaaca aaagatacgc gccctggccc
     1921 aatacgcgag ggattcactg ttgctggcgg attgccgtgc atgatccggc gcggtgcacg
     1981 cgcggattgt gccgctattg cactacggga ccgtgacgtt ctgatccaga acgaccgtgc
     2041 ctgtgttcga agcatttgac ccggtctgac cgcccgtcac cacatacttc accacgactc
     2101 gtacgctacc gctgggcacg tcgagcgacc tttcgatata gctgtagttc ggtccgtcct
     2161 gagcaaccgc gcaggtgccc gctccagggc cggggaccgt cgtgatgact ctcaccgtca
     2221 gtgtatttcc gctgagggcg tcatcggctg agatcgtggt ggcgcaggga ggatctggtg
     2281 caacgacgac acctgctaca acgacgctgc tgacgtcgcc tctcgcggta acgcgtggca
     2341 gcgactgcgc cacctcgggc gacacgctct gtacgctgaa ggtcggcgcc ggacgcggta
     2401 cggtgagtga tgaactcgaa cacgcgacaa tcagtggcgc gagcagcatt gcagcgggtc
     2461 tgcacatcgg ctacaccact acgtccttgt cccgtcggat cggaacccgt tttcccttga
     2521 tgtgcgtcgc gcgcaacgtg tcgacgatgt catctgcaat ctcatcggga acttcgacta
     2581 acgagaagcg atcgtagatc tcgatcgcgc cgatgacgtc ggagtcgagc tgcagctcgt
     2641 tcgcaatcgc gccgacaatg tcgccgggac ggatcttggc cttgcggcct gcaccgatgt
     2701 atatcttcgc aacttcccaa ccgggtttgc gcttgctgcc ggctacagta cgcggttgct
     2761 tgccttcacg ctttggacga tcctcccttg gacgaccctc cgcacgatcc cttgggcgat
     2821 cgttagcggc cgacggacgc tgcgccggcg gtcgctgaac cggaatttcc tcttccgcct
     2881 cgtgcttgtc gttaccgctc gcttcatgcg ccatcttcac cgcggcggcc gcaatgtcca
     2941 tcacgtcgta gtcgccatcg gccagcgact cgacaactcc gcgatactcg tccaactgat
     3001 cgccgatcag aatctcctgc agcgtcgcgc gcgtcagctc gacgcgtcgc acgcgcatgt
     3061 cggcgactgt tggaactgtc gcgatctcga tcttctgctt tgtaatattc tcgatgttgc
     3121 gcaggaaccg gtgctcgcgc ggctcggcga gcgttatcgc aacgccttca cgtcctgctc
     3181 gcccggtgcg tccgatacga tgcacgtatg cgtccggcga ggtcggaacg tcgtagttga
     3241 agacgtgcga cagatgcccg atgtcgagg
//
LOCUS       DATIMD010000207        10101 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2098025, whole genome shotgun sequence.
ACCESSION   DATIMD010000207 DATIMD010000000
VERSION     DATIMD010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 10101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10101
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2098025"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1405)
                     /locus_tag="VLI40_04640"
     CDS             complement(<1..1405)
                     /locus_tag="VLI40_04640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96492.1"
                     /translation="MKYTFATERATNLILLMIVGAATVASTLPAQLPDSSIDAFHSAT
                     TRAKLALARDAGRLWGSRLDSVPWLGVSGKTILLTSAPVGVAGYTQTRGVWEGPLPTT
                     ITPSNTSVTWAGRHWAMVLLPVYGDTLGAERLLIHEAMHVLQPSVLPAPSYDETGAGS
                     GLLDEAAGRSWLRLEWKALATALRSSGAKRDSAVHDALLFRAARYAIASPDEITRERA
                     LDVKEGIPEYTGWKLSNSPRAAFIASLDSAPTTLPSFVRAFEYFTGPAYAMLLDDYTN
                     GRWHRALKDHPDLQSMIAGAIAPRNFPDESLVQAALATDSGTAVSPAVTQLAHSRAQV
                     YGGPAIVAEENVRWTNRERELAAYRKEFLDSPTIRLRPHSLNVSFNPRGQASLGAAGT
                     VMANLAWKSADGASLTAPSGALINQSWTELRVSLGAAHLEPGVVKQTTTINGDGWTLV
                     LVPGWTVRADGASMVITP"
     gene            complement(1561..2544)
                     /locus_tag="VLI40_04645"
     CDS             complement(1561..2544)
                     /locus_tag="VLI40_04645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96493.1"
                     /translation="MIDITKVCLTFVTALVIPVHGVVLSQSQSSNAVEIKLPAAPGVV
                     GPGIISTPAEEFRGTVSPDNRTIMYVVTDHLFQHMTLVQAGRNGDGWATPAVVSFSGT
                     WRDGDPAFAPDGRTIYFISNRPLPGDAANTARRDFNIWYAHRKADGSWTDPVAIDRSI
                     NTEQSEMSPSVTSSGTLYFSRGDRIMRAERKGEGYSEPSIVELAAKGAGDPYISADER
                     VLVLDADGVTPGDADLFISCRSSTGWTRPRRFADPVNSTAEEGDPSISPDGRTLYFFS
                     RRLISGGSHAPRPPRKQRATYAEVEREAISNIYNGSRNLYSVSLSGFSCGP"
     gene            complement(2541..3503)
                     /locus_tag="VLI40_04650"
     CDS             complement(2541..3503)
                     /locus_tag="VLI40_04650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96494.1"
                     /translation="MTIKLLLVTALAISSSKPVPAQVTAPEIFAPGVISGSANDLSPA
                     FTPDGRTVLFTRSNSSQSTIMISHLSGSTWSKPEIAPFSGEWRDLEPTMAPDGSYLIF
                     VSNRPATSGGKALDGFYNGAAQPAAGGNLWRVDRTARGWGEPHRLPDIVNSNTSIYSP
                     SIAGDGSIYFMQPTGAKARFHLFRAQFSNGAFATPVAVPVSASEDVGDYDPAVAPDES
                     FMVFSSARLPDKGTSLFIAFRKNGVWSTPEYMGDTVSIPHAGNIEARLGPDHRTLYFS
                     STHVEPALPYQTRAESEQGLERMVKWNDGLANIWRVSLSPWITR"
     gene            complement(3696..5105)
                     /locus_tag="VLI40_04655"
     CDS             complement(3696..5105)
                     /locus_tag="VLI40_04655"
                     /inference="COORDINATES: protein motif:HMM:TIGR00797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HSU96495.1"
                     /translation="MPVPDDRSVILESHEEGVTPITITGEWEHARLVRQPLARTILRL
                     GLPAVASTLLMTLFFTVDLLWIGRFLGPIALAAATASVFWIWLIISIAELVSIGLTSL
                     AARRHGERNPEEASRVVGEAMVYSIILGSAVAIVGTLLLDHLFSVMNVEPEIATLGRR
                     YLGTYVLGAPLFFGFFAVDAGFRASGDTRTPLAILSVSIAVTMILDPVLILGLGPAPK
                     LGIEGAAIATAITRTLAFALGVVVLHKRRMVSFGRVRGATIAAITRVGLPTAMTGVVF
                     SLIYIVLTRSIAPFGPAALAALGIGHRVESWLYTISLGFGAAVAAIVGQNLGAGEIKR
                     AENSGWITVGYVMVPAIILSILELTIAPDFAAIFTTDPATQMMGAEYLRISALSNMFL
                     GAEIVLEAALGGSGTTLPPMLTSTTLTAVRVPLAIWATAQVGIVGVWWVIVLTAAARG
                     LAMALIWKSGVWKRRAVLA"
     gene            5140..5391
                     /locus_tag="VLI40_04660"
     CDS             5140..5391
                     /locus_tag="VLI40_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96496.1"
                     /translation="MTRNNPYGDDGGARVGKPDTPKRDNLQGGGDGGNLGAGKESTGD
                     ISKYGNPGGAEHPAPEPPARKEGKNSGGRGNAKRGSGQK"
     gene            5471..6448
                     /locus_tag="VLI40_04665"
     CDS             5471..6448
                     /locus_tag="VLI40_04665"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HSU96497.1"
                     /translation="MLAPSGIHHVTAIASDPQRNIDFYSGVLGLRLVKRTVNFDDPTT
                     YHFYFGDEIGRPSTLLTFFPWPNARRGRQGAGQAAVTSFAIVPGSVGFWLERLLKNAV
                     DFEQPTTRFDGERVIALKDPDGLLLELVSHQRVEQCDASADVGTGVQVPPEHRIRGVY
                     SVTLWQDGQQHTAELLTDSLGFSLAREQGSIFRYTSDDSRPGSIVDLRIVPGLWPGVL
                     GAGTVHHVAFRATDDRTQLDVHDELESAGYNVTPALDRDYFKSVYFREPGGVLFEIAT
                     DGPGFTVDEPAASLGRSLKLPAWLEPRRFEIEALLPNIHLPIDLPGPNA"
     gene            6542..8551
                     /gene="tkt"
                     /locus_tag="VLI40_04670"
     CDS             6542..8551
                     /gene="tkt"
                     /locus_tag="VLI40_04670"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HSU96498.1"
                     /translation="MTDKTPVELEKACIDAIRVLAMDAVQKADSGHPGTPMALAPLAY
                     VLWTRHIRYNPADPHWANRDRFILSCGHASMLLYSVFYLTGYDLSLEDIKNFRQLHSR
                     TPGHPEYGHTPGIETTTGPLGQGFSNAVGMAIAEAHTSTVFNRAQRIIDHYTYFIASD
                     GDLMEGISNEAASFAGHNKLGRLIGFYDDNHITIEGNTDLTFSDNTRLRFEGYGWHVQ
                     FVGDVKDLDALDEAIKRAKAETERPSLIIIRTHIGYGSPNKQDTAAAHGSALGVEEIK
                     LTKENLGIPSQEPFYVDPDALAFWRRAGLAGADEQSAWNRLYDDWKAANPDLCAEFER
                     RASGHLKDGWEDLIPTFDAKNGNVATRSASGAVINAIAPKIPELIGGSADLASSTDTI
                     VKGAPSFGPEHYEGRNFHFGIREHGMGGVMNGMALYGGIIPYGATFLIFSDYMRPPMR
                     LACMMRQRLIYVYTHDSIGLGEDGPTHQPIEQLSNLRAVPNMTVIRPADANETAEAWR
                     VALKIGTPVCLILTRQKLPFIDRSKYAAASNAARGAYVLADIRGGDPEVVLMASGSEV
                     SIILAAQDTLAQQGIRARAVSMPSMELFAQQDQAYRDSVLPPGIKRVSIEASQPMSWY
                     KWIGETGVAIGLDHFGASAPYQELFKEFHLTPENVVNTAKSLLGK"
     gene            8563..9237
                     /locus_tag="VLI40_04675"
     CDS             8563..9237
                     /locus_tag="VLI40_04675"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004061 - arylformamidase activity
                     [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HSU96499.1"
                     /translation="MSERRVIDISVMLSPDTPVWPGDTPFSCLWTWNIEEGSSVNVSA
                     VTSSPHAGTHADTPLHITRAAAGSESLALEAFQGPAVVVDVTDLAGEIAIEEIDRRTH
                     GFAPATRLLLKTGRSIATGVFPESWPRLSVDCARNLVTRGVVLVGMDCPSADDRESKT
                     LEVHHELLDHGVCVLENLDLREAEAGEYVLDALPMKVAGLDAAPVRAVLNKGTWSDFP
                     QLATRI"
     gene            complement(9434..>10101)
                     /locus_tag="VLI40_04680"
     CDS             complement(9434..>10101)
                     /locus_tag="VLI40_04680"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSU96500.1"
                     /translation="RADSVSGAIDDFSVLTGDGESLGARRLILSYGVADQMPDVPGFA
                     EGWGTSIVPCPYCDGFEVADQHWGLVWSGPQSHNQVRLFHDWTDTLTLFADGHDIPPD
                     IRADLARRNVPVVDGRIIEIAHHAGHIATVNLETGRNVAVDILFAHPRNKPSASLHES
                     LGLATVDTPSGIALKVDERRETSMPGIYAAGDLANPLMPSVTTASSHGAMAGIFAQQS
                     MLV"
BASE COUNT         2084 a         3009 c         3156 g         1852 t
ORIGIN      
        1 gcggcgtgat gaccatcgac gcgccgtcgg cgcggactgt ccacccgggc acgagaacca
       61 gcgtccatcc atctccgttg atggtggtcg tctgcttcac gacgcctggc tcgagatgcg
      121 cggcgccgag cgatacacgt agctcggtcc acgactgatt gatgagcgcg ccggacggcg
      181 cggtcagtga ggcaccgtcc gcgcttttcc acgcaaggtt cgccatcacc gttcccgccg
      241 cgccgagcga agcctggcca cgcgggttga agctcacgtt gagcgagtgc ggccgtagcc
      301 ggatggtagg actgtcgaga aattccttcc tgtacgcggc gagctcacgc tcgcgatttg
      361 tccatcggac gttttcttcg gcgacgatcg cgggaccgcc gtaaacctgc gcgcgtgaat
      421 gtgccaactg ggtaacggct ggcgataccg ctgtgccgga gtccgtggcg agtgcggcct
      481 gaacgagcga ttcatccggg aagttgcgcg gtgcaatcgc tccggcgatc atggactgta
      541 aatcaggatg gtccttgaga gcgcggtgcc agcgcccgtt ggtgtagtcg tcaagaagca
      601 tcgcataggc gggccccgtg aagtattcga atgcgcgaac gaacgacggc agcgtcgtcg
      661 gtgcggaatc cagcgatgca atgaacgccg cacgcggtga gttggacagt ttccagccgg
      721 tgtattccgg aatgccttcc tttacgtcca gcgcacgctc gcgtgttatt tcatctggcg
      781 atgcgatggc atagcgcgcc gcacggaaca gaagcgcatc atgtacggcg ctgtcacgtt
      841 ttgcgccgct gctgcgcagc gccgtcgcga gcgccttcca ttccagacgc agccaggagc
      901 ggccagccgc ttcgtccagc agtcccgagc cggcaccggt ctcgtcatac gatggtgccg
      961 gcagcaccga tggttgcagc acgtgcattg cttcgtgaat cagcagacgc tcagcaccga
     1021 gtgtgtcgcc gtagacgggg agaaggacca tcgcccagtg acgaccggcc caggtaaccg
     1081 acgtgttgga cggcgtgatc gtcgtcggca gcgggccttc ccacacgccg cgcgtctgcg
     1141 tgtagccggc tactccgacg ggggcgctcg tgagcagaat cgttttgccg ctgacgccga
     1201 gccacggcac ggagtcgagc cgcgagcccc agagcctgcc ggcgtcgcga gcgagcgcca
     1261 acttcgcgcg cgtcgtcgcg ctgtgaaagg catcgatcga gctatcggga agttgcgctg
     1321 gcaacgtgct cgcgacagtg gccgcgccaa ctatcatgag caggatgagg tttgtggcgc
     1381 gctctgtagc aaacgtgtat ttcatatctc gatcgaggtg acaagcccgc tcacacactc
     1441 ctgtgctcgc gcgagcgagg taccgcaagc gccgcccagt tgcaattgga ccgacgcaag
     1501 cagcgaatgg tttcctgcag gtttgtcgcc aaatatatcg aggtgtgcct ggttgctatt
     1561 tcatggtccg cacgagaacc ccgaaaggct taccgaatag agattccgtg agccgttata
     1621 gatgttgctg atggcctcgc gctcgacctc ggcgtacgtt gcacgctgct tgcgcggtgg
     1681 gcgtggcgca tgactgcctc cagagatgag ccgccggctg aaaaagtaca gggtgcgccc
     1741 atccggagag atcgagggat cgccctcctc ggcggtcgag ttgacgggat cggcgaacct
     1801 ccttggccgc gtccaaccag tgctggatcg acagcttatg aacagatctg catcaccggg
     1861 agtcactccg tcggcatcga gcacgagaac acgttcgtcg gctgagatat atggatcgcc
     1921 cgctcccttc gctgccaact cgacgattga aggctcggaa taaccctctc cctttctctc
     1981 cgcgcgcatg atcctgtcac ctcgcgagaa gtacagcgta cctgagctcg taaccgatgg
     2041 cgacatttcc gattgttccg tgttgatgct tcgatcgatg gctacaggat cggtccagct
     2101 tccatctgct ttccgatgtg cgtaccagat attgaagtcg cgacgcgcgg tgttcgctgc
     2161 gtcaccaggc aagggacgat tcgagatgaa gtaaatcgtg cgcccgtcgg gcgcgaaggc
     2221 tgggtcgcca tcccgccacg ttccggaaaa tgaaaccacc gctggcgttg cccatccgtc
     2281 accgttccgc ccggcctgca cgagcgtcat gtgctgaaac aggtgatcgg tcacgacata
     2341 catgattgtt ctgttatcgg gcgataccgt ccccctgaac tcctcagctg gcgtggagat
     2401 gattcctggc ccaaccacgc caggtgcagc aggcagcttt atctctacgg cgttactcga
     2461 ttgtgattga gagagaacaa cgccgtggac ggggatcacg agcgcggtaa cgaaggtgag
     2521 acagaccttc gtgatgtcga tcatcgtgta atccatggcg atagcgacac tcgccatatg
     2581 ttggcgagcc cgtcattcca cttcaccata cgctccagac cctgttcgct ctcggcacga
     2641 gtctggtacg gtaacgcagg ctcgacgtgc gtgctcgaga agtagagcgt gcgatgatcc
     2701 ggacccaaac gcgcctcgat gtttccagcg tgcgggatac tcaccgtatc gcccatgtat
     2761 tcaggcgtgc tccagacgcc gttcttgcga aacgcgatga acagcgaagt tcccttgtcg
     2821 ggtaggcgcg cggaagagaa caccatgaat gattcatctg gagcgacagc cggatcataa
     2881 tctccgacgt cttcgctcgc actcactgga acggcaacgg gggtcgcgaa cgcgccgttt
     2941 gaaaactgtg cgcgaaagag atgaaacctc gccttcgcac cggtcggctg catgaagtag
     3001 atgcttccat caccggcgat actcggcgag taaatggaag tgttgctgtt gacgatgtca
     3061 ggcaggcggt gcggctcgcc ccagccgcgc gcggtgcgat cgacacgcca gagatttcct
     3121 ccagcagcgg gctgcgccgc gccattgtag aaaccatcga gtgcctttcc accgcttgtc
     3181 gcgggacgat tcgacacgaa aatgagatac gagccatccg gcgccattgt cggctccaga
     3241 tcgcgccatt caccggagaa gggcgcaatc tccggcttcg accatgtcga gccggacagg
     3301 tgcgatatca tgatggttga ctgactcgag ttgctgcggg tgaataacac cgtgcgaccg
     3361 tctggggtga atgccggaga cagatcgttt gcagacccgg agatcacacc cggtgcaaat
     3421 atctcgggtg cagttacctg agctggaaca ggtttactcg acgaaattgc cagtgcagtc
     3481 accagcaaga gctttatggt cattcggaca accatacggg tgggaatgat gagtggtagc
     3541 gccacgaaga tcgcgtcggt aacactgtat cacccacgat gtcatgggga aatccgggtg
     3601 cagcaggcgg tcgaattatg tcagtgagcg gtgcggtgtc tcatcagcgg cgagtatcac
     3661 agtaccaggg taaacgcgag tggtggtcgc acgcttcacg cgagcactgc ccgccgcttc
     3721 cataccccgc tcttccagat gagcgccatt gccagaccac gcgcggcagc tgtcagcacg
     3781 attacccacc acacaccgac gatcccgacc tgtgccgtgg cccatatggc gagtggaact
     3841 cgtacagcgg tcagtgtcgt ggaggtgagc atcggcggca gcgtggtgcc cgatccgccc
     3901 agcgcggctt ccagcacgat ctcggcgccg aggaacatgt tcgacagcgc gctgatgcgc
     3961 agatactcgg cgcccatcat ctgagtcgcc ggatcagtcg tgaagatcgc agcgaaatcc
     4021 ggcgcgatgg tcagctccag tatgctgagg atgatcgcgg gaaccatcac gtatccaacg
     4081 gtgatccatc cgctgttctc cgctcttttg atttcaccgg cgccgaggtt ctggccgacg
     4141 attgcggcga ccgctgcgcc gaagccgagg ctgatggtgt atagccaact ctctacacgg
     4201 tgtccaattc cgagcgcagc aagcgcggcc ggtccgaatg gcgcgatgct gcgcgtgagc
     4261 actatgtaaa tgagcgagaa gaccactccg gtcatcgcgg tcggcagacc cacgcgcgtg
     4321 atggctgcga tcgttgcacc tcgcacgcgt ccaaagctga ccatgcgacg cttgtgtaga
     4381 acaacgacac ccaatgcgaa cgcgagagtg cgcgttatcg cagtcgcaat cgcggccccc
     4441 tcgattccga gtttcggcgc ggggccaaga ccgagtatca ggaccggatc gaggatcatc
     4501 gtcaccgcga tcgacacgct gagaatcgcg agtggggttc gggtgtcacc actggcgcga
     4561 aatccggcgt cgaccgcaaa gaaaccaaag aagagcggtg caccaagtac gtatgtgccg
     4621 agatagcggc gtccgagtgt cgcaatctcc ggctcgacgt tcatcacgga gaatagatga
     4681 tccagcaaca gcgtccccac gatggcgact gccgagccga ggatgatcga atacaccatc
     4741 gcctccccga ccacacgcga cgcctcctcg ggattgcgct caccatgtct gcgggctgcc
     4801 agcgatgtga gaccgatgct caccagctcc gcgatcgaga tgatgagcca gatccagaag
     4861 acgctcgcgg tcgccgcggc gagtgcaatg ggacccagaa agcggccaat ccagagcaga
     4921 tcgaccgtga agaacagcgt catgagaagc gtggacgcca ccgccggtag ccccaggcgc
     4981 aggatcgtgc gcgcgagcgg ctggcgaaca agccgggcgt gctcccattc accagtgatg
     5041 gtgatcggag taacgccctc ttcgtgcgat tcaaggatta ccgaacggtc atcgggcacg
     5101 ggcattgccc aatctatcgg gctctgccag gaggcatgaa tgaccaggaa caatccatac
     5161 ggcgacgacg gcggtgcacg cgtcgggaag ccggacacac cgaagcgcga taacctccag
     5221 ggcggcggtg acggtggaaa cctgggggcc ggcaaggagt ccaccggaga catttcaaag
     5281 tatgggaatc caggtggcgc ggagcacccg gcaccagagc cgccagcgcg taaggaaggc
     5341 aaaaattccg gcggtcgcgg aaacgcaaag cgcggctctg gccagaagtg acgccgttgg
     5401 tatggcgcca tcgcactcgc gccatacgcc gggtccggga acggcgaccg gaccgggtaa
     5461 atttcggcag atgctcgctc cctcaggaat ccaccacgta accgcgatcg ccagcgatcc
     5521 acagcgcaat atcgacttct actcgggagt ccttgggctc aggctggtca agcgaaccgt
     5581 gaacttcgac gatccaacca cctaccattt ctattttggt gacgagatcg gccgtccgag
     5641 cacacttctg acgttcttcc cctggcccaa cgcccgtcgc ggacgccagg gcgcgggcca
     5701 ggccgcggtg acatcgttcg caatcgtacc gggctcagtc ggattctggc tcgagcggtt
     5761 gttgaagaac gccgtcgatt tcgaacaacc gaccacccgc ttcgacggcg agcgcgtcat
     5821 tgcgctcaag gatccggacg gactgttgct cgagctggta tcgcatcagc gcgttgaaca
     5881 gtgcgatgcg tcggcggacg tgggcaccgg cgtgcaggtc ccgccggagc acagaatccg
     5941 cggcgtttat tccgtcacct tgtggcagga cgggcagcag cacaccgccg aactgcttac
     6001 agactcgctc ggattcagtc ttgcgcgcga acagggaagc atcttccggt acacgtcaga
     6061 cgacagcaga ccgggctcga ttgttgatct cagaatagtt cctggactgt ggcctggcgt
     6121 cctcggcgcc ggaacggtgc atcacgttgc atttcgcgca actgacgaca ggacgcagct
     6181 cgatgtgcac gacgaactcg agtcggccgg atacaacgtg acgccggccc tcgatcgcga
     6241 ttacttcaag tcggtttatt ttcgcgagcc cggtggagtg ctctttgaaa tcgcaactga
     6301 tggacccggc ttcaccgtcg acgagcctgc agcttcactc ggccgctcac tcaaactgcc
     6361 cgcgtggctt gagccgcgcc ggttcgagat cgaagcgctc cttccaaaca ttcacctgcc
     6421 gatcgatctg cccggaccga acgcgtagcc gtcaacaacg cacttcacaa cgcatttcac
     6481 aacgcagttc acaacaaatc tcgcagtata tcaatcttcg accaaataga gcgacgtaca
     6541 gatgacagac aagactccag tggaactcga gaaggcgtgc atcgatgcga ttcgcgttct
     6601 tgcgatggac gcggtgcaga aagcggactc gggccacccc gggacgccaa tggcgctcgc
     6661 gccactcgca tacgtgttgt ggacgcgtca cataaggtac aatccagctg atccgcactg
     6721 ggccaaccgc gacagattca ttctgtcgtg tggtcatgcg tcgatgctgc tgtacagcgt
     6781 cttctatctc actggctacg acctgtcact cgaagacatc aagaattttc gtcagctgca
     6841 cagcaggaca cccggacatc ccgagtacgg acacacaccc gggatcgaga cgacgaccgg
     6901 tccgcttgga cagggcttca gcaacgccgt ggggatggca atcgcggaag cgcacacgtc
     6961 gacggtgttc aatcgcgctc agcgcatcat cgatcactac acctacttca tcgcgagcga
     7021 tggcgatctc atggaaggga tctccaacga agccgcgtcg ttcgccggcc acaacaaact
     7081 cggccggttg atcggattct acgacgacaa ccacataacg atcgaaggca acaccgatct
     7141 cacgttcagc gacaacacgc ggctgcgctt cgaaggctac ggctggcacg tgcagttcgt
     7201 cggtgacgtg aaggatctgg atgcgctgga cgaggccatc aagcgcgcaa aggcggagac
     7261 cgagcgtccg tcgctcatca tcatacgcac gcacatcgga tacggcagcc ccaacaagca
     7321 ggatacggca gccgcgcacg gctcggcgct tggcgtcgag gagatcaagc tcaccaagga
     7381 gaatctcggt attccatcac aggagccgtt ctacgtcgac ccggacgcgc ttgcattctg
     7441 gcgacgcgca gggctcgcgg gtgcggacga acagtccgca tggaacagac tgtatgatga
     7501 ttggaaggct gcgaatccgg acctgtgcgc ggaattcgag cgacgcgcca gcggtcatct
     7561 caaggatggc tgggaagatc tgattccgac attcgatgcg aagaatggaa acgttgcaac
     7621 acgatcagcg tccggtgccg tgatcaacgc gattgcaccg aagattccgg agctgatcgg
     7681 tggctcggcg gaccttgcca gctcgaccga tacgatagtg aagggtgcac cgagcttcgg
     7741 accggagcac tacgagggtc gcaatttcca tttcggaata cgcgagcatg gaatgggcgg
     7801 cgtcatgaac ggaatggcgc tctacggcgg cataattccg tacggcgcga cgttcctgat
     7861 attcagcgat tatatgcgcc cgccgatgcg gctcgcgtgc atgatgcggc agcgtctcat
     7921 ctacgtgtac acgcacgatt cgatcggact tggcgaggac ggcccaacac atcaaccgat
     7981 cgagcagctg tccaatctcc gcgcagttcc aaacatgacc gtcatccgcc ctgccgacgc
     8041 gaacgagacg gccgaggcat ggcgcgtggc gctcaaaatt ggaacgcccg tgtgcctgat
     8101 actcactcga cagaagctgc cgttcatcga ccggagcaag tacgccgccg ccagcaacgc
     8161 cgcgcgcggt gcctacgtac tggccgacat ccgcggcggt gatccggaag tcgtgttgat
     8221 ggcaagcgga tccgaggtgt ccatcattct cgcggcgcag gacacactcg cgcagcaggg
     8281 aatccgcgca cgagctgtga gcatgccgag catggaactg ttcgcgcaac aggatcaggc
     8341 atatcgtgac agtgtgctgc caccgggaat caagcgtgtc tcgatcgaag cgtcgcagcc
     8401 gatgtcgtgg tacaagtgga tcggtgagac cggcgtagcg ataggcctcg atcatttcgg
     8461 cgcgtctgca ccgtatcaag agctgttcaa ggagtttcat ctgactccgg agaacgtcgt
     8521 caatacggca aagtcgttgc tcggaaagtg acggttcgct gaatgagtga acgccgagtg
     8581 atcgacatct cggtgatgct gtcccccgac acaccagtgt ggccggggga cactccgttt
     8641 tcgtgtctgt ggacgtggaa catcgaggag gggtcgagcg tgaacgtgag cgcggtgacg
     8701 tcgagcccgc acgccggcac gcacgcagat acgccgctgc acataacgcg tgccgcggca
     8761 ggatctgaat cgctggcgct cgaggcgttc cagggtccgg ctgtggttgt ggacgtgaca
     8821 gatctcgccg gtgagatcgc gatcgaagag atcgatcgcc gcacgcacgg attcgcgcca
     8881 gcgacgcgcc tgctgctcaa gaccggacga agcatcgcaa ccggtgtatt cccggaaagc
     8941 tggccgaggc tgtcagtcga ttgtgcgcgg aatctggtaa cgcgtggcgt ggtcctggtt
     9001 ggaatggact gtccgtcggc cgacgatcgg gagagcaaga cactggaggt gcaccacgag
     9061 ttgctggacc acggtgtctg cgtgctggag aatctggatc ttcgagaagc ggaggcaggc
     9121 gaatacgtgc tggacgcgtt gccgatgaag gttgcggggc tggatgcagc gccggtgcgg
     9181 gccgtgctca acaaggggac atggtcggac tttccccagc ttgctacgcg aatctgaaaa
     9241 caaaatgacc gaccggcgac gaagcggatg gacgagagac gctgatgctg gcttcggtgt
     9301 cactggtttt ggacatgtgc gtctcctcag gcgccgggtg cactgccggg tcagccggcc
     9361 agtcggtttt ccgtaacacc ggcctgcaac cttcaaaaaa gtatagcctg cggcaaccgg
     9421 cgaatctgtg ttctcaaacc agcatcgact gctgcgcgaa gatacccgcc atcgcgccgt
     9481 gcgatgatgc agtggtgacc gagggcatga gggggttggc gaggtcgccg gcggcgtaga
     9541 tgccgggcat gctggtttcg cggcgctcgt cgaccttgag ggcgataccg ctgggcgtat
     9601 cgacagtggc gaggcccagt gattcatgca ggcttgcgga cggcttgttg cgcgggtgcg
     9661 cgaacaggat gtcgaccgcg acattgcggc cggtctcgag attgacggtg gcgatatgac
     9721 ccgcgtgatg ggcgatctcg atgatccggc catcgacgac aggtacgttg cggcgcgcca
     9781 gatcggcccg gatatcgggc ggaatgtcgt gaccatcggc gaaaagcgtc aacgtgtcgg
     9841 tccaatcgtg gaacagtctg acttgattgt gcgactgcgg gccggaccag acgaggcccc
     9901 aatgctggtc cgcgacttca aagccgtcgc aataggggca gggcacgatg gacgtgcccc
     9961 agccttcggc aaagcccgga acatcaggca tctggtcggc gacgccatag ctcaggatca
    10021 ggcggcgcgc cccaaggctt tcgccatcgc cagtgaggac ggagaaatcg tcgatggcgc
    10081 cggagacgct gtcggcccgg g
//
LOCUS       DATIMD010000208         2391 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4988549, whole genome shotgun sequence.
ACCESSION   DATIMD010000208 DATIMD010000000
VERSION     DATIMD010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2391
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4988549"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(53..346)
                     /locus_tag="VLI40_04685"
     CDS             complement(53..346)
                     /locus_tag="VLI40_04685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96501.1"
                     /translation="MSEREEHPQLSASVNRGPMRAAAALQAYFGRLQAHGFITGDVNA
                     RAAAAMLIGTIISDAMGRDVMPDIYPSTPAAAAEQYTALILRAIGLSPQTAGA"
     gene            488..652
                     /locus_tag="VLI40_04690"
     CDS             488..652
                     /locus_tag="VLI40_04690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96502.1"
                     /translation="MDERILGPELPENGYLIDPSLVGDASGGRTPVSVLGIDSGSSPE
                     QFFAPFHGEE"
     gene            complement(892..2124)
                     /locus_tag="VLI40_04695"
     CDS             complement(892..2124)
                     /locus_tag="VLI40_04695"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU96503.1"
                     /translation="MLQTESDNGARRSITGTRAQRAAHFFGLERNVVAVAAAMFLLGL
                     GENLWRRFLPKYLLSLGAPITAIGLFGTAEDFLDGVYQYPGGWIADRFGRRRALLLFI
                     ALAALGYVVYWIMPVWQAAFLGLALVMVWDSMASPTLFAVVGDALPPAERTMGFTVQS
                     VLRRVPIVIAPTIGGLAVVAFGIRGGVRLGLGASVLMASVTLFVVSRVRIPVVPDETP
                     ITVRHVWATFPIPLRWLLASDIFIRTCDAMVDVFLVIFVVNVVGLSATRFGALVAVQA
                     LTAILVYIPAAKIAERTGKKPFVIATFVAFALFPLTVVNATGFASLVIAFIVGGLREV
                     GEPARKAFIINLAQPALRARVVGMYYLGRSLAIAPAAFVGGLLWRVSPGIPFYVAAVF
                     GGIGVVVFAATVDEEYAV"
     gene            2164..>2391
                     /locus_tag="VLI40_04700"
     CDS             2164..>2391
                     /locus_tag="VLI40_04700"
                     /inference="COORDINATES: protein motif:HMM:NF042524.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Chromate resistance protein ChrB"
                     /protein_id="HSU96504.1"
                     /translation="MPDVSGSGWLLLIHQIPPKPDYLRVKVGRRLQRVGAIAVKNSVY
                     VLPKREDSYEDFQWIAREIEEASGEALVCEAT"
BASE COUNT          544 a          725 c          717 g          405 t
ORIGIN      
        1 tggccgttat aagtatcatc gagttgtcga gtgaatctgg ttttgcgtct ggctatgcgc
       61 cggccgtttg cggcgagaga ccgatcgctc tgagaatgag agccgtgtac tgctcggcgg
      121 ccgcagcggg ggtgctcgga tagatgtccg gcatcacatc tcggcccatt gcatcggaaa
      181 tgatcgtccc gatcaacatc gccgccgccg cacgggcgtt gacgtcaccc gtgatgaagc
      241 cgtgcgcctg gagccgcccg aaatacgcct ggagcgcggc tgccgcacgc atcggaccac
      301 gattgaccga agcgctcaac tgcgggtgtt cctcgcgctc gctcatgcag cgtcgcatga
      361 gggaccggga ggcacatata tgagagcgga gggcggcagc ccactcctgc agctcgcgtt
      421 ggggattgac cggcactttt gggagctcga ctagcggacc actcaacccc gacgaggcga
      481 tggcctcatg gatgagcgta tccttggtcc cgaattgccg gaaaatggtt atctcattga
      541 ccccagcctc gtcggcgatg cgtctggtgg tcgaaccccg gtatccgtgc tgggcataga
      601 ctcgggcagc agcccggagc agttcttcgc gcctttccat ggggaggaat aaatggacgc
      661 gcgttcattt ctgcaagtga gtacttgctt gcggcagatg tttacgggga gtgtcagcgt
      721 tcgcccgaac gcatctgtga agatccagaa ttaatcggac ctgcagaagt tccccggact
      781 ccctgaacca cgccgaaccg ccgaaatggg tacgagcgcc aagcttaagc gcttcagcaa
      841 gcaaatagtt gacgcgtgtc attcgggaac gcgctggata gcgctgccgt actacacggc
      901 atactcctcg tccactgtgg ctgcaaacac gacgacgccg attcccccaa acaccgcagc
      961 gacatagaac ggaatcccgg gcgacacgcg ccagaggagg cctccgacga acgcagctgg
     1021 ggcaatcgcg aggcttcggc cgaggtaata catcccgacg acacgcgctc gcaacgccgg
     1081 ctgggcaagg ttgatgatga aagccttgcg cgctggttcg cccacttcgc gcagcccgcc
     1141 gacaatgaac gcgatgacaa gcgatgcaaa tcccgtggcg tttaccaccg ttaacggaaa
     1201 gagcgcaaac gcgacgaacg ttgcgatgac aaacggcttt ttcccagtgc gctcggcgat
     1261 cttcgctgcc gggatataaa caagaatcgc cgtgagtgcc tgcactgcga caagcgcacc
     1321 aaagcgcgtg gcgctcaacc ccacgacgtt gacgacgaag atgaccagga aaacatcgac
     1381 catggcatcg catgtccgaa tgaagatgtc ggacgcgagc agccagcgga gtggtatggg
     1441 aaatgtggcc cacacatgcc ggacggtgat tggggtctcg tccggcacaa caggaatgcg
     1501 cactcgtgat acgacgaaca gcgttacact ggccatcagg acggatgcac cgagccccag
     1561 gcggaccccg ccgcgaatac cgaacgccac gacggcgagg ccaccgatcg taggggcaat
     1621 tacaatcggc acccggcgca gcaccgactg aaccgtgaag cccattgtgc gctcagctgg
     1681 agggagcgcg tctccgacaa ccgcaaagag tgtgggactc gccatactat cccagaccat
     1741 cacgagagca agcccaagaa acgcggcctg ccacacaggc atgatccagt agactacata
     1801 gccgagcgca gcgagtgcga tgaaaagcaa gagcgcacgt cgccggccga atcggtctgc
     1861 gatccaccct ccgggatact gatacacacc gtccaggaaa tcctcggcgg tcccgaacaa
     1921 ccctatcgcg gtgatcggcg cgcccaggga caacagatac tttggaagga agcggcgcca
     1981 caggttctcc cccagtccga gcaggaacat cgcggcggcg acggcaacca cgttgcgctc
     2041 gagcccgaag aagtgcgcag ctcgctgagc ccgtgtacca gtaatacttc gccgggcacc
     2101 attgtctgat tcagtttgta acataacttt gatacaactg cgagataaat gccaacgaaa
     2161 gacatgcccg acgtctccgg ctctgggtgg ctgctcctga tccaccagat tccgcccaaa
     2221 ccggactact tacgggtgaa agtgggtcgg agacttcagc gcgtgggtgc cattgccgtc
     2281 aagaactccg tctacgtcct ccccaaaagg gaggactcat acgaggattt ccagtggatc
     2341 gcacgtgaga tcgaggaggc gagcggcgag gccctggtct gcgaagccac g
//
LOCUS       DATIMD010000209        13076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2965996, whole genome shotgun sequence.
ACCESSION   DATIMD010000209 DATIMD010000000
VERSION     DATIMD010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 13076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13076
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2965996"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..399
                     /locus_tag="VLI40_04705"
     CDS             <1..399
                     /locus_tag="VLI40_04705"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSU96505.1"
                     /translation="PLNVSSFMGLILLVGLIVKNGIILLDFTRYRMVNDDVPLEIGLR
                     DAARTRLRPILMTTLCTLFGLLPLALGLGAGSELQRPLALAVIGGLALSTPITLYMVP
                     SLLVLIRGREYRIARPAAETSLAESTATAP"
     gene            446..988
                     /locus_tag="VLI40_04710"
     CDS             446..988
                     /locus_tag="VLI40_04710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HSU96506.1"
                     /translation="MIHSWHDLPPGSNPPVQVTAVVEIPTGSRNKYELDKDTGLFRLD
                     RVLYSAVSYPGEYGLIPRTLHEDGDPLDVLVQVDQPTFTGCQIDVRPIGVLKMLDRGE
                     PDDKIFAVPWHDPRYEEYYDIARFPQAYLKEIEHFFLIYKDLEGRRVEIQGWEGSDSA
                     KQVIVDSIARYDAKYMHVGP"
     gene            complement(985..3102)
                     /locus_tag="VLI40_04715"
     CDS             complement(985..3102)
                     /locus_tag="VLI40_04715"
                     /inference="COORDINATES: protein motif:HMM:NF022481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2723 domain-containing protein"
                     /protein_id="HSU96507.1"
                     /translation="MTREVRTGAPQTPPYAWGALAALCVFALYLMTLSPTTAMWDTSE
                     YIAAAKVLGLPHPPGNPLFVIIAHTFGLIPIPVSYAARINILAALCSAIAAGSWFVLI
                     DFVLARGGVPALRRRLCAAAGVVIGASAFTVWNQSVVNEKVYTISLALFAIVTLLMLS
                     WLDGDGKPRNDAKLVAIAFLLGAGYAVHPAGLLPGLAVVVTVASQRWRKFLQPRLVLA
                     VFGAFALGLTPFIFEPIRAAQAPEMNEGAPTGCATKLEWSCTFSEKTYTRLSDNINRT
                     QYGKPSVTDRQISFGAQLGMWWLYFKWQWLRDPHGTAPFAQMLLALLMFGLGIYGATV
                     HWRWDRASCIYWATFMFTLTVLLVYYMNFKYGYSQAPGLGDSVPREVRDRDYFYLWSF
                     SAWGVWIAVAIAALWQRARSGGALLALAAVPLIGNWSAASRRNDTVARDWAVDILNSV
                     EPYGVIVTGGDNDTFPLWYAQYVEGVRRDVTVVIDQYLGMDWFVEQLLRTPIHKYDAA
                     AGPAMYRTGNWPVPTHPVFLMTAAQADSVPDLMELHEPQLLKSGAIEGRIAAGYLERK
                     DVFVLRLITDALPERPVYFTMGSPYPKQFGLQRYVLGEGLVQRLMPTPVSDSTGPVLD
                     VRGTDALWRIYRGPAAIVRRGDWIDRPSLPTPVDYTLVGLNLSDALEHQGDTTRAREV
                     RNDAIAVVKAARMEDIFGMTKTP"
     gene            complement(3102..3881)
                     /locus_tag="VLI40_04720"
     CDS             complement(3102..3881)
                     /locus_tag="VLI40_04720"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSU96508.1"
                     /translation="MVISDAAVVNRIRDGESDAFALLFERYHERCARLAMRLLGDADD
                     AADAVQEAFIRAYLSLDSYQERDRFSSWLLCIVANRCRSASDAARRRANIAGEWVRAH
                     SDAGHAVVLPREEDHALAQRLSEALGSLPDATRSVVLSKYGEDRSYEEISADTGVAVS
                     ALKMRVARGSAQLRRTLVGAGITVATVALIFVTHTRDNRKPRTATVVACDTLRAIMHD
                     TLGASTRDSILPPGRCGEDTHSPAQEQRLRAVHDPQPTTEF"
     gene            4001..4747
                     /locus_tag="VLI40_04725"
     CDS             4001..4747
                     /locus_tag="VLI40_04725"
                     /inference="COORDINATES: protein motif:HMM:NF016764.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YIP1 family protein"
                     /protein_id="HSU96509.1"
                     /translation="MTAPDELSASAPPASAKPASLWEDFIDIFVSPSEVFERRRDSGF
                     FVPLLVFVVLSVAIVIVGHSALQPIFDSEFSRAMAAAAKKNPQVSQAQMEGPRALMGK
                     LTPVFAGFGALVMPLAIGVVLWIVGKFFDAKESIGAACMIATYAVLPRILDSLVRLAQ
                     ASMMDPSSLNGQYRVSLSAARFLDPDVASPLVLGLLGRIDLFTIWATVLLAIGLSVVA
                     RIPRQRAAVAAFIVWVLGALPTLLTALRAS"
     gene            complement(4853..5557)
                     /locus_tag="VLI40_04730"
     CDS             complement(4853..5557)
                     /locus_tag="VLI40_04730"
                     /inference="COORDINATES: protein motif:HMM:NF012455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HSU96510.1"
                     /translation="MRDSLRHFVSEFIGTFALVFVGSAAIMAAAQANSPYALLQVALA
                     HGLVLSIFVTALMRISGHFNPAITLGFVAARRIDPMMAGIYIVAQLLGAAAAAYILKG
                     TFPDAIVAATRDGGQAISLDVTASQAWILEAIATFFLTFAVFATAVDLKSPRVGGFAI
                     GLVVTVDILAIGPLTGASMNPARSFGPALASGIYEGQFIYWTAPIVGSIIAAVLYDTL
                     FIRRDREPIEHGAIET"
     gene            complement(5620..6864)
                     /gene="fabF"
                     /locus_tag="VLI40_04735"
     CDS             complement(5620..6864)
                     /gene="fabF"
                     /locus_tag="VLI40_04735"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HSU96511.1"
                     /translation="MNSRRRVVITGIGAITPIGSTKDGMWDGVLRERSAVRSLTRFDP
                     SIFRSHNAAEVPDFDPNDFIESKRARRLDRFGQFSVAAAKQAIEDSEIDLATEDRDRV
                     GAMMGTALGGVGYAEEQLSVFLREGLRAVDATLALAVFGGAASCNIAIELGVSGPNST
                     NAMSCASGAMAIGEAFRQIRDGYADVMIAGGAEAPLAPLCFGAFALIRAMSTRNDDPE
                     HSSRPFDHERDGFVMGEGTAVLILEEYDRAVSRGARIYAEVCGYGTTNDAHHMTAPLP
                     DGTQAARAMRMALCDAAVAPSEIGYINAHGSSTPLNDPTETLAIKQVFGDYAATVQAS
                     GTKGYYGHALGASGAIEAAICALAIDREWLPPTVNLTERDPACDLNYIAGTGRSDRVE
                     HVLSNSFGFGGINAALVFRRVV"
     gene            complement(6861..7355)
                     /locus_tag="VLI40_04740"
     CDS             complement(6861..7355)
                     /locus_tag="VLI40_04740"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HSU96512.1"
                     /translation="MIDLGPMPAERRMRVLDELEVRAPVSRIFALARDVHRWPEHLPH
                     YRFVRFNRQETDGGGVVEMSANRPFGVLDWPTWWRSDMQVIDTTPAVRFRHVAGITSG
                     MDVEWSFEPTPTGTHVRILHVWNGPEWPLIGHFAATTVIGPVFVHGIASRTLAGLARV
                     AEAE"
     gene            complement(7352..8056)
                     /locus_tag="VLI40_04745"
     CDS             complement(7352..8056)
                     /locus_tag="VLI40_04745"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSU96513.1"
                     /translation="MLTPRRRYGIELLDSRHDDEGLVLRTVEDIRRSNVLFSGTRAAV
                     KELALHFVRLPEQATLLDVGTGHGDIPRAAVRAAAARRITLTTVGLDSEPVITRSASC
                     SVTYAVCGSGLALPFADGSVDVAMCSQTLHHFRDEEERMLLREMNRVARVAVVVSDLR
                     RSWIAAAGFWLASFPLRFHKVTRHDGVLSVMRGYTAGELSSAVFDAVGTQPAVHRRIG
                     FRITTSWVPTASERAT"
     gene            complement(8074..8550)
                     /locus_tag="VLI40_04750"
     CDS             complement(8074..8550)
                     /locus_tag="VLI40_04750"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013756.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HSU96514.1"
                     /translation="MSLDPDAFRAVMGRFASGVTVVTATNEAGAAYGMTVSAFASVSL
                     QPPLVVMCIDHAASLHDTLTNAPFFAVNILASTQEPIARRFADTGAQRFEGIGYRNGE
                     NGVPILNDVLAFVECKRVSSAEAGDHTVIIGETVAASMRDARPLLYYRGGFAQLER"
     gene            complement(8547..9773)
                     /locus_tag="VLI40_04755"
     CDS             complement(8547..9773)
                     /locus_tag="VLI40_04755"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSU96515.1"
                     /translation="MKQTQVIIVGAGPGGSSTAWHLARAGVDVMLLDRASFPRDKVCA
                     EYLSPQASRILAKMGAMEQIEASGPAQLTGMRVRAPNGYEINGSFVAQHGYRAFNDTG
                     IAVRRSVLDAILVEQARAAGATLVQRARVTDVIRDGAGRVCGVTILDSDGATREMRAP
                     LVVGADGLRSVVGRRLGLTRVSRVPRRVAFVAHFRNLPGVTEVGEMHVEKDGYVGIAD
                     VGNGLTNVALVVPARAARDAAMDPDTMLDEWLIGHPHLAARFAVAERVEPVRATGPFA
                     SYTRRAWAGGAALVGDAADFFDPFTGEGVYTALRGGELLAPFAAEAALNAARADHALA
                     EYERARRAEFHGKWLVEKLIAGTIAVPGLINHAARALSRRREMADLLVGVVGDFVPAS
                     QVLRLGYFARLLLFGV"
     gene            complement(9770..10648)
                     /locus_tag="VLI40_04760"
     CDS             complement(9770..10648)
                     /locus_tag="VLI40_04760"
                     /inference="COORDINATES: protein motif:HMM:NF014049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF92 domain-containing protein"
                     /protein_id="HSU96516.1"
                     /translation="MTETIFAPNGSLSLVGRAIVGLALAIVAALLARRARSLSGSGAI
                     AAAACGALCVVAGWRWAGLLVAYFLAATALSWAGKEDKEERSAGVVSKGGRRDAIQVL
                     ANGGVYSLAAALTVAIPAQYVVWGAIGALAASSADTWATEIGVWLGGEPRLITNGTIV
                     RPGTSGGVTPAGMLGSISGAAWIALGAMLAGFRGHGIVLAALIGGFGGSIIDSLLGAT
                     VQERRWCDACGEPTERTIHRCGATTHRAGGIIRLNNDVVNLLSTAAGFLLGVIVYCIA
                     RYFGQSGIDWVASALR"
     gene            10712..11227
                     /locus_tag="VLI40_04765"
     CDS             10712..11227
                     /locus_tag="VLI40_04765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96517.1"
                     /translation="MPLSLLEAVREADRPDGDGEAEYAPEFLNKRLGTTDTVYAQIRR
                     YNEAARRGHPIPESEVVALARLMGRRPDAIELFRNAGVATARAAYGRLSPIKRGSVKL
                     LPRIVARPIARRQAQKLLARYFGAVLNRSGPVLRMDVPVHAPVSAGADEPGREYYDAA
                     LRELLTLLTLI"
     gene            11243..12421
                     /locus_tag="VLI40_04770"
     CDS             11243..12421
                     /locus_tag="VLI40_04770"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HSU96518.1"
                     /translation="MLLASKLDEIHQAIEDAGVDGWLLYDFRGTNPIAASVVGISGTP
                     SRRYFCYIPRNGNPVAITHAIEQGPWETWPSNWTKYVYSSWRDLEAFLAKVVSGKRVA
                     MEYSAGDAVPYLDRIPAGVVEMVRNAGAEVVTSADLVTRIYAVWTPEQLESHKRAAEH
                     LARIAHNAMALAGEKARAGSPMREYELQQLIRQEFDEAGLFTDHGPNVSTGLSAANPH
                     YEPTAEQSELINDGDILLIDLWAREPDGVYADQTWMGSLGPASAANVTIWETVRGARD
                     AAIAVLRDRIENDVPVTGGEADDAARNYITERGFGEKFTHRTGHSIDSRDIHGSGPNI
                     DNLESRDVRVLLPGVAFSIEPGIYIPGQVGMRSEVNGYVSKGSLLITPSRIQEDLFIV
                     "
     gene            complement(12489..>13076)
                     /locus_tag="VLI40_04775"
     CDS             complement(12489..>13076)
                     /locus_tag="VLI40_04775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96519.1"
                     /translation="RGMILDFEGLTPDDLDVLVRVSNAFADSARAHGISPTGMAIPAT
                     DTAAYPGRPLLGAVDFLVVMLSDQHWLTSPPGPIASPDWAMRALGMRAADIGSSRVVA
                     AFPIYGYQWRSDSATAIVSFAEAEALARDAHVALQRDPASNTLHAESDGWSVWVSDAT
                     LLDSLVRGARRTGITKFALWRLGLEDPRIWTDVVR"
BASE COUNT         2482 a         4313 c         3888 g         2393 t
ORIGIN      
        1 ccgctcaacg tctcgtcgtt catgggtctc attctgctcg tgggtctgat cgtgaagaat
       61 ggaatcatcc ttctcgactt cacgcgttac cggatggtca atgatgacgt tccgctcgag
      121 atcggattgc gtgacgccgc acgcacgcgt ctgcgtccga ttctcatgac gacgctctgc
      181 acccttttcg gattgcttcc gctcgcactg gggcttggcg ccggaagcga gctgcagcgt
      241 ccgctggcgc tcgcggtaat cggcggactg gcactgtcca cgccaatcac gctttacatg
      301 gtgccaagcc tgctcgtact cattcgcggt agagaatacc gcatcgctcg gccggcagcc
      361 gaaacatccc tggcggaatc cacggcgacc gcaccgtagg ccggcatgcg gccgaaggct
      421 accggctgca tgttatcttt ggacgatgat ccattcatgg cacgatctcc cgcccggaag
      481 caatcctccc gtgcaggtca ccgcggtcgt agagatacca actggaagcc gcaacaaata
      541 cgagcttgac aaggatacgg gcctcttccg cctcgatcgt gtgttgtact cggcggtctc
      601 atatcccggt gaatacgggc tgatcccgcg caccctgcac gaagacggtg atcccctcga
      661 cgttctcgtt caggtcgatc agccgacttt taccggatgc cagatcgacg ttcggcccat
      721 cggcgtcctc aagatgctgg atcgtggcga gccggatgac aagatctttg ccgtgccgtg
      781 gcatgacccg cgttacgaag agtattacga catcgcgcgg ttccctcagg catatctcaa
      841 ggagatcgag cacttcttcc tgatctacaa ggatctcgag gggcgtcgcg tcgagattca
      901 gggatgggaa gggagcgact ccgcgaagca ggtgatcgtc gattcgatcg cgcgctacga
      961 tgcgaagtac atgcacgtcg ggccctaagg cgtcttcgtc atcccgaaga tatcttccat
     1021 ccgcgctgct tttaccacag caatggcgtc gttgcgcacc tcgcgcgccc gtgtagtgtc
     1081 accctggtgc tccaacgcat cactcaggtt gagccctacc agcgtataat cgaccggcgt
     1141 cggcaatgac ggtcggtcga tccagtcacc gcgacgcacg atcgccgcag gcccacgata
     1201 gatacgccac agcgcatcgg tcccacgtac gtccagtact ggcccggtgg aatccgacac
     1261 cggagtgggc atcaatctct gaacgagccc ttctccaagc acgtatcgct gcaagccgaa
     1321 ctgcttgggg tagggagatc ccatcgtgaa atacaccggc cgctcaggaa gcgcgtccgt
     1381 gatgagccgc agtacgaaga cgtccttgcg ttccaggtag ccagcagcga tgcgtccctc
     1441 gatagcgccg ctcttcagca gctgaggctc gtgcagctcc atcagatcgg gaaccgaatc
     1501 agcctgcgcc gccgtcatca gaaacaccgg atgcgttggc accggccaat tgccggttcg
     1561 atacatcgcc ggaccggcgg cggcatcgta cttgtgaatg ggtgtccgca gcaactgctc
     1621 cacgaaccag tccatgccaa ggtactggtc gatgaccacg gtgacgtctc tccgcacgcc
     1681 ctcgacgtac tgagcgtacc agagcggaaa cgtatcgttg tcgccaccgg tcacgattac
     1741 gccgtacggc tcgaccgagt tgagaatgtc gactgcccag tcgcgcgcga cggtgtcgtt
     1801 ccgccgcgat gccgcgctcc agtttccgat tagcggaact gccgccagcg ccaacagcgc
     1861 cccgccggac cgcgcccgtt gccacagcgc cgcaatcgca accgcgatcc agacgcccca
     1921 cgcactgaag ctccacagat agaagtaatc acgatcgcgc acttcgcgcg gcacgctgtc
     1981 acccagcccg ggtgcttgcg agtaaccgta cttgaagttc atgtaataga cgagcagcac
     2041 cgtcagcgtg aacatgaacg tcgcccagta gatgcacgag gcgcgatccc atcgccagtg
     2101 cactgtcgcg ccatagatgc ccagcccgaa catcaggagc gcaagcagca tctgcgcaaa
     2161 cggcgcagtt ccatgcggat cccgtagcca ttgccacttg aaatacagcc accacatgcc
     2221 gagctgcgcg ccaaacgaga tctgacggtc cgttaccgat ggtttgccgt actgcgtgcg
     2281 gttgatgtta tcggaaagcc ttgtgtacgt cttctcgctg aacgtgcacg accattcgag
     2341 tttggtcgcg caaccggtgg gcgctccctc gttcatctcg ggcgcctgcg cggcgcgaat
     2401 cggctcgaag atgaacggcg tcaatcccag cgcgaacgcg ccgaacaccg cgagcacgag
     2461 acgtggctgc aggaacttcc gccaccgttg actcgctacg gtcacgacta ccgccagccc
     2521 cggaagcaag ccggccggat gcaccgcgta tccggcgccc aatagaaatg cgattgcaac
     2581 cagcttcgca tcgttcctcg gcttcccgtc tccgtcgagc cagctcagca tcaacagcgt
     2641 cacgatcgcg aacagcgcga gcgagatcgt gtacaccttc tcgttgacga ccgattgatt
     2701 ccagacggtg aacgcgctcg caccaatcac gacacccgcc gcggcacaga gtcggcggcg
     2761 caacgccggc actccgccgc gcgcgagcac gaaatcgatc agaacgaacc acgaacccgc
     2821 ggcaatcgcg ctgcacagcg ccgcgagaat gttgatccgc gctgcgtacg acaccggtat
     2881 cggaatcagt ccgaacgtat gtgcgatgat gacgaacaac gggttgccgg gcggatgcgg
     2941 cagaccaagc acctttgcag cggcgatgta ctcgctcgtg tcccacattg ccgtcgtcgg
     3001 cgacagcgtc atgagataca acgcgaacac gcacagtgct gcgagcgcgc cccaggcgta
     3061 cgggggagtt tgcggcgccc ccgttctcac ctctcgcgtc atcagaattc cgttgttggt
     3121 tgtggatcgt gcacggcgcg gagtcgctgc tcctgcgctg gcgaatgcgt gtcctcgccg
     3181 caacgtcccg gcgggagtat cgagtcgcgg gtcgaggcgc ccagcgtgtc gtgcattatc
     3241 gcgcgcagcg tatcgcacgc gacgactgtc gcggtcctcg gctttctatt gtcccgcgtg
     3301 tgagtcacga agatcagcgc aacggtcgcc actgtgattc cggcgccgac cagagtgcgg
     3361 cgaagttgcg cggagccgcg ggcgacacgc atcttgagcg ccgataccgc gacaccggtg
     3421 tcggcggaaa tctcctcata gctccggtcc tcgccatatt tgctcagcac gaccgagcgc
     3481 gtggcatccg gcagcgatcc cagcgcctcg ctcaatcgct gggcgagcgc gtggtcctcc
     3541 tcgcgcggga gcaccaccgc gtgacctgcg tcggaatgtg cccgcaccca ctcgcccgcg
     3601 atatttgcac gacgacgcgc cgcatcactt gctgaccggc aacggtttgc gacgatgcag
     3661 agcagccacg agctgaagcg gtcccgctcc tgatagctgt cgagtgacag ataggcccgg
     3721 atgaacgcct cctgcaccgc gtcagcggcg tcgtcggcgt cgccgagcag ccgcatcgcc
     3781 agccgggcgc aacgttcatg gtaccgctcg aagaggagcg cgaaggcgtc gctctcccca
     3841 tcgcgaatcc ggttgacgac cgccgcgtcg gaaatcacca tgctatgtta acccacccaa
     3901 ccgcctcatg gtcacatcct gccgacgcgc cgtgggaaaa tccactctgg cgtgccggcc
     3961 ctcattggtg cactgtagtg cggacctcaa cccctggatc atgacagctc ccgatgaact
     4021 gagtgcatct gccccgccag cgtccgcaaa gccagcaagc ctgtgggaag acttcatcga
     4081 cattttcgtc tctccaagcg aggtattcga gcgcaggcgc gactcgggat ttttcgttcc
     4141 gctgctcgtc tttgtcgtgc tgtcagtcgc catagtcatc gttggccact cagccctcca
     4201 accaatattc gactcggagt tctcgcgcgc catggccgcc gccgccaaga agaacccgca
     4261 ggtgagccag gcgcaaatgg agggcccgcg cgcgctcatg ggaaaattga cgccggtctt
     4321 cgccggcttc ggggcactcg tgatgcctct tgccatcggc gtggttctct ggatcgtcgg
     4381 caagttcttc gacgcgaagg agagcattgg cgcggcatgc atgatcgcaa cgtacgcagt
     4441 ccttcctcgc attctggact ctctggtcag actggcgcag gcgtccatga tggacccatc
     4501 ctcgctcaat ggccagtatc gtgtcagcct gagcgccgcg cgcttcctgg accccgacgt
     4561 ggcgtcgcct ctggtactcg ggctgctcgg ccggatcgat ctctttacga tctgggcgac
     4621 agtactgctg gcgatcgggc tatccgttgt cgccaggatt ccgcgccagc gggcggccgt
     4681 cgccgcgttc atcgtatggg tcctgggggc acttccgaca ctgctgacgg cactcagggc
     4741 gtcgtaagtc gcgcgcctgt ggaatgcgac gctctcagga aaaaaagtgg cgagtccggt
     4801 atccggactc gccactttcg gacatcacag atatgctctc aagattcagc ggtcaggtct
     4861 cgatcgcgcc gtgctcgatt ggctcccggt cacgtcttat gaacagtgtg tcgtacagca
     4921 cagccgcgat tatcgatccc acgatcgggg ccgtccagta gatgaactgg ccctcgtaaa
     4981 tccctgacgc gagcgccggt ccgaaagacc gtgccggatt catcgatgcg cctgtaagtg
     5041 gcccgatcgc aaggatgtcc acggtcacca cgagtccaat cgcgaatcca ccaacccgcg
     5101 gcgatttcag atccaccgcc gtcgcgaaca ccgcgaaggt caggaagaac gtcgcgatcg
     5161 cctccagaat ccacgcctgt gacgcggtga cgtcgagaga gatcgcctgg ccaccatcac
     5221 gcgtcgccgc gacaattgcg tcggggaagg tccccttcag tatgtacgcg gcggccgccg
     5281 cgccgagcag ctgcgccacg atatagatgc cggccatcat cggatcgatg cgccgcgcag
     5341 cgacgaatcc cagtgtgatc gccggattga agtgtccgga gattcgcatc agcgccgtga
     5401 cgaagatcga cagcaccagc ccgtgcgcca gggccacctg caacaatgcg tacggagaat
     5461 tcgcctgtgc ggcggccatt atcgccgcgc ttccaacgaa gaccagcgca aatgtgccta
     5521 tgaactccga aacaaaatgg cgcagcgaat cacgcatgca ttaccccgtg tgaaacaagg
     5581 ttgacccggg cgcttcgcga cgcgcccgga tgcgcgtcgc tacactaccc ggcggaagac
     5641 cagcgcggcg ttgataccgc cgaaaccgaa cgagttgctg agcacgtgct cgacccggtc
     5701 ggagcgcccc gtccccgcga tgtagttaag atcgcacgcc gggtcgcgct cggtaaggtt
     5761 caccgttggc ggaagccatt cccggtcgat cgcaagagcg cagatggcag cttctatggc
     5821 gccggatgca cccagtgcgt ggccataata tcccttcgtc ccgctcgcct gcacggtcgc
     5881 ggcataatcg ccgaacacct gcttgatcgc gagcgtctcg gtcggatcgt tgagcggtgt
     5941 ggagctgccg tgcgcgttga tatatccgat ctccgacggc gccacggccg catcgcagag
     6001 cgccatgcgc atcgcgcgcg cagcctgcgt tccatcggga aggggcgccg tcatgtgatg
     6061 agcgtcgttg gtggtgccgt agccgcagac ttccgcgtag atgcgtgcac cgcgtgatac
     6121 tgcgcggtcg tattcctcca gtatcaacac cgccgtgcct tcgcccatca cgaagccatc
     6181 acgctcgtga tcgaacggtc gcgacgagtg ttcaggatcg tcgttgcggg tggacatcgc
     6241 acgtatgaga gcgaaggcgc cgaagcagag cggcgcgagt ggtgcctccg ctcctcctgc
     6301 tatcatgacg tcggcgtagc cgtcgcggat ctggcggaac gcttcgccga tcgccatcgc
     6361 gccggatgcg cagctcatgg cattggtcga gttcggtccc gacactccca gctcgatcgc
     6421 gatgttgcag ctcgcggcgc cgccgaatac cgcgagcgcg agtgttgcat ccaccgcgcg
     6481 caatccctct cgaagaaaca cactgagctg ctcttccgcg taacccacgc cgccgagtgc
     6541 agtgcccatc atggcgccga ctcgatcgcg atcttcagtg gcgagatcga tctcggaatc
     6601 ctcgatggcc tgcttcgccg cggccacgga aaactgaccg aatctgtcca gtcgtcgtgc
     6661 gcgtttgctt tcgatgaaat cgttcggatc gaagtccgga acttcagcgg cattgtgact
     6721 gcgaaagatc gacgggtcga atcgcgtgag tgaccggacc gccgatcgct cacgcagcac
     6781 gccgtcccac attccgtcct tcgtggagcc gattggtgtt attgcaccga ttcctgtgat
     6841 gactactctt cgcctgctgt tcattcggcc tccgccacac gcgccaatcc tgcaagagtg
     6901 cgcgacgcaa tgccgtgcac gaacactggt ccgatcaccg tcgtcgccgc aaagtgtccg
     6961 atcagcggcc actcaggtcc gttccacacg tgcaggatgc gaacgtgcgt ccccgtcggc
     7021 gtgggctcga agctccactc gacgtccatt ccactcgtga tgccggcgac gtgacgaaac
     7081 cggactgccg gcgtggtgtc gatcacctgc atgtccgatc gccaccacgt gggccagtcg
     7141 agaacgccga acggcctgtt ggccgacatc tccactacgc cgccgccgtc ggtctcctgt
     7201 ctgttgaaac ggacgaagcg atagtgcggg agatgttccg gccagcgatg tacgtcgcgc
     7261 gcgagcgcga agatccggct tacgggcgcg cgtacttcga gctcgtcgag tacgcgcatc
     7321 cggcgctctg cgggcatcgg gcccaggtcg atcatgtcgc tcgctcgctc gccgttggca
     7381 cccagcttgt cgttattctg aagcctatcc ggcgatgcac cgctggctga gttccaaccg
     7441 cgtcgaacac cgcgctcgac aactcgcctg cggtgtagcc acgcatcacc gacagaacgc
     7501 catcgtgccg ggtaaccttg tggaaccgca gcggaaacga tgcgagccag aagccggccg
     7561 cagcgatcca gcttctccgc aggtcgctca cgacaaccgc cacacgggcc acgcgattca
     7621 tctcgcgtag cagcatacgc tcttcctcgt cgcgaaaatg atgcagtgtc tgagagcaca
     7681 ttgcaacgtc cacacttccg tctgcaaacg gcagcgcaag tccgctgccg cagaccgcgt
     7741 aagtcaccga gcacgacgcc gaccgcgtaa tcaccggctc ggagtccagt cctaccgtgg
     7801 tcagcgttat gcggcgggcc gcggcggccc tgaccgccgc acgcgggatg tcgccatgac
     7861 cagtgcctac atccagtagc gtcgcctgtt ctggaagccg cacgaagtgc aacgcgagct
     7921 ccttgaccgc cgcgcgcgtt ccactgaaga gtacgttcga gcgccggatg tcctcgacgg
     7981 ttcgaaggac cagtccctcg tcgtcgtgac gggaatcgag tagctcgatg ccgtatctac
     8041 gtcgcggtgt cagcaaacct ggcatcgttc ggcctagcgt tccaattgtg cgaacccacc
     8101 acggtagtac agcagcggcc gcgcatcgcg catcgacgcc gctaccgtct ctccgatgat
     8161 gacggtgtgg tcgccggctt ccgcggacga gacgcgtttg cattccacga atgccagtac
     8221 gtcgttgaga atcggcacgc cgttctcgcc gttccggtaa ccgattccct cgaatcgctg
     8281 cgcacctgtg tctgcgaacc gtcgtgcgat cggctcctgt gtcgatgcga gaatgttcac
     8341 cgcgaagaac ggcgcgttcg tcagtgtgtc gtgcagcgat gctgcatggt cgatacacat
     8401 tacgaccagc ggtggctgca gcgacaccga cgcgaaggcg ctgactgtca tcccgtaggc
     8461 ggcgccggct tcgttcgtcg cggtaacgac agttacgccg cttgcgaatc tccccatcac
     8521 cgcccggaat gcatctggat cgaggctcat acaccgaaca gtaacagcct cgcgaaatag
     8581 ccgagcctca atacctggct cgccggcacg aaatctccca cgacacccac gagcagatct
     8641 gccatttctc tacgcctcga taacgcacgt gcggcgtgat tgatcaggcc ggggacggct
     8701 atcgtgcccg cgatcagctt ctcgaccagc cactttccat ggaactcggc acgacgcgcc
     8761 cgttcatact cggcaagcgc gtggtccgca cgcgcggcat tcagcgcggc ctcggcggca
     8821 aacggtgcca gcagctcgcc gccacggagc gcggtgtaca ccccttcgcc ggtgaacgga
     8881 tcaaagaagt cggccgcgtc gcctacaagc gcagcgcccc cggcccaggc tctcctggta
     8941 tacgacgcga acggccccgt cgcgcgcacg ggctccacgc gctcggccac cgcgaatctc
     9001 gcggccaggt gcggatgtcc gatcagccac tcatcgagca tcgtatccgg atccatcgct
     9061 gcatcgcgcg ccgcgcgcgc cggaaccacc agcgcgacat tcgtaagacc attgccgacg
     9121 tcggcgatgc ccacgtatcc gtccttctct acgtgcatct cgccaacctc cgtgacacca
     9181 ggcaggttac ggaagtgggc gacgaacgcg acgcgacgtg gaacgcgtga gacgcgcgtg
     9241 agaccgagcc tgcggccaac caccgagcgc agaccgtcgg cgccgaccac gagcggtgct
     9301 ctcatctcac gtgtcgcgcc gtcggaatcg agaatcgtaa cgccgcacac gcggccggcg
     9361 ccgtcacgaa tgacgtcagt gacacgcgcg cgttgcacca gcgtcgcacc agcggctcgc
     9421 gcctgctcga ccagaatcgc gtcgagtacc gatctgcgca cggcgattcc tgtatcgttg
     9481 aatgcgcgat atccgtgttg cgcgacgaag cttccgttta tctcgtatcc attcggagcg
     9541 cgcacgcgca tcccggtgag ctgcgcgggt cccgatgctt cgatctgttc catcgctccc
     9601 atcttcgcca ggatgcgcga cgcctgagga ctcagatact cggcgcagac cttgtcgcgc
     9661 ggaaagctcg cgcgatcgag caacatcaca tcgactccag ccctggccag gtgccacgca
     9721 gtggatgaac cgccgggtcc tgctccgacg attattacct gcgtctgttt catcgaagtg
     9781 ctgacgctac ccaatcaatc cccgattgtc cgaagtatct tgcgatgcaa tacacgataa
     9841 ctcccaataa aaaccctgcg gcggtggaaa gaagatttac gacgtcgtta ttgagccgaa
     9901 tgattcctcc agcgcggtgg gtggtggctc cgcagcggtg aattgtccgc tccgttggct
     9961 cgccgcacgc gtcgcaccac cgtcgttcct gcactgtcgc gccgagcaat gagtcgatga
    10021 tcgacccgcc gaaacccccg atgagcgccg caaggacgat tccgtgaccg cgaaagcccg
    10081 ccagcatggc accgagcgcg atccacgcag cgccggaaat ggagccgagc attccagccg
    10141 gcgtaacgcc gccggaagtt cccggacgga cgatcgttcc attagtgatt aatcgcggct
    10201 ctccgcccaa ccagactcct atttccgttg cccacgtgtc tgcggacgag gcggccagcg
    10261 ccccgatcgc tccccagacg acgtattggg caggaatcgc gacagtaagc gccgcggcca
    10321 gcgaatacac gcctccgttc gccagcacct ggattgcgtc gcgacggccg cccttggaaa
    10381 cgacgcctgc gctacgctct tccttgtcct ccttgccggc ccatgaaagg gcggtggcgg
    10441 ccaggaagta ggcgaccaat agtcctgccc acctccagcc cgcgacgacg cagagtgccc
    10501 cgcacgcggc cgccgcgatg gctccgctcc cactcagcga ccgcgctcgc cgagcaagca
    10561 gtgccgctac gatcgccaga gcgagtccaa cgatggcgcg gcccacaagg ctcaggcttc
    10621 cgtttggcgc aaaaattgtc tctgtcaccc gtgggagtta acttggcgct ctaatatgtc
    10681 gccatcccct gcaacgtcag tcgatccgct cgtgccgctt tctctactcg aggccgtgcg
    10741 tgaagctgac cgtccggatg gcgatggcga agcggaatat gccccggagt tcctcaacaa
    10801 gcgattgggg acgaccgata cggtttacgc ccagatccgg cgttacaacg aggccgcacg
    10861 ccgcggccac ccgataccgg aatccgaagt agtcgcactc gcgcggctca tgggccggcg
    10921 gccggacgcg atcgaattgt ttcgaaacgc gggcgtcgcc actgcgcgtg ccgcgtatgg
    10981 acggctttcg ccgatcaagc gtgggagtgt gaaactgctc ccgcgcatcg tcgcgcgccc
    11041 gattgcgcgg cgtcaggcgc agaaactgct tgcacgttac ttcggagctg tgctcaacag
    11101 atccggacca gttctccgga tggatgttcc tgtgcatgcg cccgtttcgg ccggtgcgga
    11161 cgagcccggt cgtgagtatt acgacgctgc gcttcgagaa ctgttgactc ttcttactct
    11221 tatctgatag aaggcgttca aaatgctgct tgcctcaaaa ctcgatgaga tccaccaggc
    11281 tatcgaagac gccggtgtgg atggttggct gttgtacgac tttcgtggaa ccaatccaat
    11341 tgccgcgagc gtcgtcggca tttccggtac gccgtcgcgc cggtatttct gctacatccc
    11401 gcgcaacggc aatccggtcg cgataactca cgcgatagag cagggcccgt gggaaacgtg
    11461 gccgtccaac tggaccaagt acgtgtacag cagctggcgc gatctcgagg catttctcgc
    11521 taaggtcgta tccggcaagc gtgttgcgat ggaatattcc gcgggagatg ctgtaccgta
    11581 tctggatcgc atacctgccg gtgtcgtcga gatggtgcgc aacgctggtg ccgaagtggt
    11641 gacgtcggcc gatctggtga cgcgcatcta cgcagtatgg actcccgagc agctcgagtc
    11701 acacaaacgc gccgctgagc atctggcgcg gatcgcacac aacgcgatgg cactcgctgg
    11761 cgagaaggcg cgcgcgggaa gtccgatgcg cgagtacgag ctgcagcaac tcatccgcca
    11821 ggaattcgat gaggcgggat tgttcacgga tcacgggccg aacgtctcca ccgggttgag
    11881 cgcagccaat ccgcactacg agccaactgc ggagcagtcc gagctcatca acgacggcga
    11941 cattctgttg atcgatctct gggcgcgcga gcccgatggt gtgtacgccg atcagacgtg
    12001 gatggggtct ctgggaccgg ccagtgcggc aaacgtcacg atctgggaaa ccgttcgcgg
    12061 cgcgcgtgac gctgccattg cggtgctgcg cgatcgcatc gagaacgacg tcccggtcac
    12121 gggcggtgaa gccgatgacg ccgcgcggaa ctacatcacc gagcgtggct tcggcgaaaa
    12181 attcacgcac cgtaccggcc attccataga ctcgcgcgac atacatggat cgggaccgaa
    12241 tatcgacaat ctcgagagcc gcgatgtgcg cgtgcttctt cccggtgtcg ccttctcgat
    12301 cgagccgggc atctacatac caggccaggt cggaatgcgg agcgaggtca acggatacgt
    12361 ttcgaagggt tcgctgctca tcacgccgag caggatccag gaagaccttt tcatcgtgta
    12421 gcgagtcgct gccaggaaat accgtgtgcc ggatcgacgc gctcgatcca cgtgctcgat
    12481 ccaatgaatc agcgcacgac gtcggtccat atccgcggat cttcgagtcc gagtcgccac
    12541 agtgcgaact tggtgatccc ggtgcggcgt gcgccgcgaa ccagcgaatc gagcaacgtc
    12601 gcatcgctca cccagacgct ccatccatcc gactctgcgt gcagcgtgtt cgacgccgga
    12661 tcgcgctgca gcgcgacgtg cgcgtcgcgc gccagtgcct cggcctcggc gaacgacacg
    12721 atagccgtcg cactgtccga tcgccactgg tagccgtata tcgggaacgc ggcaaccaca
    12781 cgcgaactgc cgatgtcggc ggctcgcatg ccgagcgcgc gcatcgccca gtccggcgac
    12841 gcgattggtc ccggtggtga cgtaagccag tgctggtcgg acaacattac aaccaggaaa
    12901 tccacggcgc ccagcagcgg acggcccgga tacgccgccg tatcggtagc gggaatcgcc
    12961 attccggttg gtgatattcc gtgcgcgcgt gcggaatccg cgaaggcgtt gctcacgcga
    13021 accagaacat cgagatcgtc gggagtgagt ccctcgaagt cgaggatcat cccccg
//
LOCUS       DATIMD010000210         8177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3831601, whole genome shotgun sequence.
ACCESSION   DATIMD010000210 DATIMD010000000
VERSION     DATIMD010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8177
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3831601"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..1812)
                     /gene="groL"
                     /locus_tag="VLI40_04780"
     CDS             complement(178..1812)
                     /gene="groL"
                     /locus_tag="VLI40_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683025.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HSU96520.1"
                     /translation="MAAKELYFNTEARAALKRGVDQLAEAVKVTLGPKGRNVVIDKKF
                     GSPTITKDGVTVAKEVELTDPIENMGAQMVKEVATKTSDLAGDGTTTATVLAQAIFRE
                     GLKNVTAGANPMALKRGIDKAVQAVVDELKAISVPTTGKKEIAQVGTISANNDKEIGD
                     LIAEAMEKVGKDGVITVEEAKGLETNLDTVEGMQFDRGYVSPYFVTDPDKMEAVLEDG
                     MILIHDKKISSMKDLLPILEKVAQLSKPLLIIAEDIEGEALATLVVNKLRGTLRVCAV
                     KAPGFGDRRKAMLQDIAVLTGGQVISEEVGFKLENAVVTDLGRAKRIVVDKDNTTIID
                     GAGTDDAIQGRVKEIKAAVEKTTSDYDREKLQERLAKIAGGVAVINVGAATESEMKEK
                     KARVEDALHATRAAVEEGIVPGGGVALIRAQKALKDLKFTDHDEQVGVDIIRRAIEEP
                     IRMIVQNAGGEGSMVVEKVRSAKDNTFGYNALTDTYEDLVQAGVIDPTKVTRTALQNA
                     ASIAGLLLTTEALIVEKKEATPPAGGPPGGGMGGMY"
     gene            complement(1830..2132)
                     /locus_tag="VLI40_04785"
     CDS             complement(1830..2132)
                     /locus_tag="VLI40_04785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HSU96521.1"
                     /translation="MADKTATTVKPLADRVVIKALEETEQMRGGLFIPDTAKEKPQQG
                     EIIAVGPGRYEDGKLVPMSLKVGDKVLYGKYSGTEVTLSGDQVLILRETDVLAVIG"
     gene            complement(2264..3040)
                     /locus_tag="VLI40_04790"
     CDS             complement(2264..3040)
                     /locus_tag="VLI40_04790"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF009855.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HSU96522.1"
                     /translation="MLLTIDVGNTETTAGLFDGEVLRAHWRLTTTAARTADEMRVLLS
                     QLVSAEGIPAGAVTGVALCSVVPPTTQTVVDACDLAFGVTPVVVDARSRLPITLDVDE
                     PSTVGADRVVNTLAASRIYKRDCIIVDMGTATTYDCVSASGSFFGGIIQPGVQTSASM
                     LFTKTAMLPSTSLATPARAIGTNTADCIRAGVVFGAADSIDGLIGRIKAEWPHPDTPY
                     VVATGGLADTFRSFCDGFNEVDPYLTLQGLRIAFGILSND"
     gene            complement(3053..3832)
                     /locus_tag="VLI40_04795"
     CDS             complement(3053..3832)
                     /locus_tag="VLI40_04795"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HSU96523.1"
                     /translation="MHAAADTRPAIRYDGLSATELAERADVPRIELFDVVGSTMDEAH
                     ALASDGAVAGTVVLADSQAAGRGRNGKRWSSPPRGVWMTLIERPADPSALDVLSLRIG
                     LAAARALDTFAAEPVRVKWPNDLYVDSAKLAGVLVEARWRGDRLDWVAIGLGVNMDPP
                     PDQAAAVLEAGTSRIDVVCALLPELRGAASMSGPLTQDEMNEYAARDLARGRMCIEPL
                     RGRVMGIAPTGELLVELADSVARIRTGSLVLQSSRESESTE"
     gene            complement(3816..4625)
                     /gene="uppP"
                     /locus_tag="VLI40_04800"
     CDS             complement(3816..4625)
                     /gene="uppP"
                     /locus_tag="VLI40_04800"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: protein motif:HMM:NF014703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphatase UppP"
                     /protein_id="HSU96524.1"
                     /translation="MPTIFQALVLGLLQGLAEFLPVSSSAHLALAPWLFHWPDPGLSF
                     DVALHFGTLIAVLWYFAGEWMSLLRAAGQIIHTRKIVTVEQKRAAFLVVATIPGGIFG
                     LLLEKKAETAFRNPALIATALIVLGILLWLADYLARADRPITHMTWKDAILIGCAQVF
                     ALIPGVSRSGSTITAGRALGLDRNGAAAFSFLLSMPIIAAAVVLKVPHVMRESGMSVP
                     LLVGVAASAISGWLAISVLLKYVSRHSYGAFALYRVLLGAVVLAIYYARGG"
     gene            complement(4635..5780)
                     /gene="bshA"
                     /locus_tag="VLI40_04805"
     CDS             complement(4635..5780)
                     /gene="bshA"
                     /locus_tag="VLI40_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071793 - bacillithiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-alpha-D-glucosaminyl L-malate synthase
                     BshA"
                     /protein_id="HSU96525.1"
                     /translation="MKIGITCYPTYGGSGAVATELGIALAARGHEVHFISYRQPFRLP
                     SFLPRVFFHEVQVGAYPLFEYPPYDLALAVQMHEVVKMHGVEVLHCHYAIPHATSAWI
                     AREMLRAEHSDVAVVTTLHGTDITLVGQDPSFHAITKFSIEKSDRITAVSEYLRAETF
                     NAFHCTGCRVAVIPNFVDPAVYDRSLYSRPELLPFAGDRKVLMHISNFRTVKRVRDVV
                     RIFAKVAAETPSILVMVGDGPERPAAEDEARILGVGNSVFFLGKIETVAPLLASADVF
                     LLPTSSESFGLSALEAMASGVPVVGSDSGGLPEVVTNGVTGLLYPVGDVDSMAAGVLS
                     IITDPSRQADMGAAGADDARKRFALDTVVSQYEELYRSALKLPSDAH"
     gene            complement(5777..6427)
                     /locus_tag="VLI40_04810"
     CDS             complement(5777..6427)
                     /locus_tag="VLI40_04810"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF013845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HSU96526.1"
                     /translation="MADRRIRVIVGPTAAGKSMRAMEAAARGDIAIISADSRQIYRKF
                     DIGTAKPTPEELARVVHFGVNVVDPTEHYSAYQWARDAARWIVDAERLGKVPVIVGGT
                     GFYVKSLFDPPYDEPPVTDLALVPEYEVVDPGPELRDHIEARVDQMLENGWLDEVASL
                     MQSVPADAIAWKASGYRVMRRHLEGEYSLAHARERAIIETRQYAKRQRTWFRHQLP"
     gene            complement(6414..>8177)
                     /gene="mutL"
                     /locus_tag="VLI40_04815"
     CDS             complement(6414..>8177)
                     /gene="mutL"
                     /locus_tag="VLI40_04815"
                     /inference="COORDINATES: protein motif:HMM:TIGR00585.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HSU96527.1"
                     /translation="PVISVLPSAVADQIAAGEVVERPASVVKELVENSMDAGARAVEI
                     TVQEGGRALIRISDDGAGMDPDDAVLSLARHGTSKIRTSADLTGVRTFGFRGEALPAI
                     CSVSRIEIETALQDGSGTRLTAAGGGPPAVAPTQRRRGTTVTVTDLFYNAPARAKFLR
                     GSRSEWRAISEIVMTLALTRRDIRFDLSHDGRRAFTAPPASSLRVRLGALWGVQYADG
                     LLDVDDVAGPIHVSGLVERPANVGTATRRVFLSVNGRAIRDAGIVRGAETAYRSTIPA
                     GTRPALYLEVSVPTDSIDVNVHPAKAEIRFQDRWTVERAVERAVRRALGSFDSSASMG
                     RSFFGGIAAASEPVQVVESQVLAPQTNDTPLFRPVGSVNGSSHVEGDETAARDVATAD
                     RTREDDSIPPLTQLRRTYIMFEHEDGVVLIDQHSAHERVLYEEFMQDIERGSANSQRL
                     LLPFTLTLSAQELEAFDLNRQYFDRLGFEIDAFGGNSLIVHAVPVPHPRFDAERCLRD
                     TLASLTGDRTPSAHGRHERLVATIACKAAVKGGDLLSGAEMRALFIALRDTNLPAHDV
                     HGRSTIVQLAWSEVDRRFGRS"
BASE COUNT         1556 a         2601 c         2466 g         1554 t
ORIGIN      
        1 tactgcacga gaccgataca ctcgatggcg aagacgttct cccgggcttt cactacagca
       61 tcgcaaaact gttcgcgcgc atgtaagaca ttggagcgaa atacgcgacg ttgttttaca
      121 caacagaacg gcccggagca agtgctccgg gccgttctca catcgtggaa cgagcggtta
      181 gtacattccg cccatgccgc cgcctggcgg gccacctgct ggtggcgtcg cttccttctt
      241 ctcgacgatc aacgcttcgg tcgtcaggag caggccggcg atgctggctg cgttctgaag
      301 tgccgtgcgc gtgaccttcg ttggatcgat cacaccggcc tgcacgagat cctcgtacgt
      361 gtcggtgagt gcgttgtaac cgaaggtgtt gtccttcgcg ctacgcacct tctcgacgac
      421 catcgaaccc tcgccgcccg cattctgaac aatcatgcgg attggctcct cgatggcgcg
      481 acggatgatg tcgacgccga cctgctcgtc gtgatccgtg aacttgaggt ccttgagcgc
      541 cttctgggcg cggatgagtg caacaccgcc gcccgggacg attccctctt cgaccgctgc
      601 gcgcgttgcg tgcagagcat cctcgacgcg agccttcttc tccttcatct cgctctcggt
      661 cgctgcgccg acgttgatca ccgcgacacc gccggcgatc ttcgcgaggc gctcctgcag
      721 cttctcacga tcgtaatcgg acgtggtctt ctcgaccgcg gccttgatct ccttcacacg
      781 accctggatg gcgtcatccg taccggcgcc gtcgatgatc gtggtgttgt ccttgtccac
      841 gacgatgcgc ttggcacggc cgaggtcggt gacgactgca ttctcgagct tgaatccgac
      901 ttcctcggag atcacctgac cgccggtgag aactgcgatg tcctgcagca tcgccttgcg
      961 acgatcgcca aagccgggag ccttgaccgc gcacacgcgg agcgtgccgc gcagcttgtt
     1021 cacgacgaga gtcgcgagag cctcgccctc gatgtcctcg gcgatgatga gcaacggctt
     1081 gctgagctga gcaaccttct cgaggatcgg aagcagatcc ttcatcgacg agatcttctt
     1141 gtcgtgaatg aggatcatgc cgtcttcgag aacggcttcc atcttgtcag gatcggtgac
     1201 gaagtacggc gacacgtagc cgcgatcgaa ctgcatgccc tcgacggtgt cgaggttggt
     1261 ctcgaggccc ttcgcctctt cgaccgtgat cacgccgtcc ttgccgacct tctccatcgc
     1321 ttcggcaatg agatcaccga tctccttgtc gttgttcgcg gagatcgtac cgacctgcgc
     1381 gatttccttc ttgcccgtgg ttggaaccga gatcgccttg agctcgtcga cgacggcctg
     1441 aactgccttg tcgattccgc gcttgagcgc catcgggttc gcgccagcag tgacattctt
     1501 caagccttcg cggaagattg cctgtgcgag aacggtcgct gtggttgtgc cgtcgccggc
     1561 gaggtcggac gtcttggtcg cgacttcctt caccatctgc gcgcccatgt tctcgatcgg
     1621 atccgtgagc tcgacttcct tcgcgacagt cacaccgtcc ttcgtgatcg tcggtgagcc
     1681 gaacttcttg tcgatgacga cgttgcgtcc cttggggccg agggtgacct tcaccgcttc
     1741 ggcgagctga tcgacaccgc gcttgagagc cgcgcgtgcc tcagtgttga aatagagttc
     1801 cttcgctgcc attgtggtct agtctccgtt tagccgatca ccgcgagcac atctgtctcg
     1861 cggagaatga gaacctggtc accgctgagc gtcacttcgg tgccgctgta cttgccatag
     1921 agaaccttgt cgccaacctt gagcgacatc ggaacgagct ttccatcctc gtaccggcct
     1981 gggccgacgg cgatgatctc gccctgctgc ggcttttcct tggccgtgtc ggggatgaag
     2041 agtccaccgc gcatctgctc ggtctcttcg agtgccttga taaccacgcg atccgcgagc
     2101 ggcttcacgg tggtggcggt cttgtctgcc atagagcgcc tctattgtga tgtagagtgt
     2161 tgatgagaat cgttagcact catcaaccga gagtgctaac agccggaaat taaccagttc
     2221 gcagcgccct tcaagggata ctcaggggcg atgagccgtt cgatcagtcg ttcgaaagga
     2281 tgccgaaggc gatccggagg ccctggagag tgagataagg gtcgacctcg ttgaagccgt
     2341 cgcagaacga cctgaaggtg tccgccagcc cccccgtcgc cacgacgtac ggcgtatccg
     2401 gatggggcca ctcggccttt atacgcccta tcagcccatc gatcgagtcc gcagcgccga
     2461 acacgacgcc ggcgcgaatg cagtccgcag tattggtccc gatcgcgcgc gccggcgtcg
     2521 cgagcgaggt gctcggcaac attgcagtct tggtgaagag catcgacgcc gacgtctgca
     2581 cgccaggttg aatgattccc ccgaaaaacg atccgctggc gcttacgcag tcgtacgtcg
     2641 tcgcggttcc catgtccaca atgatgcaat cgcgtttgta gatccggctc gcggccaggg
     2701 tgttcaccac tcggtctgca ccgactgtcg acggctcgtc gacgtccagc gtgatcggaa
     2761 gccgcgagcg cgcatcaacc acgactggag tgacgccaaa cgcgagatcg cacgcgtcga
     2821 cgacggtctg agtggtcggc ggcacaactg agcacaacgc gacgccagtt acggcgccgg
     2881 cggggattcc ctccgcgctc acaagctggg acagaagtac tcgcatctca tccgccgtgc
     2941 gcgccgcggt cgtcgtgaga cgccagtgtg cccgtagcac ctctccgtca aacagtccgg
     3001 ctgtcgtctc tgtattgcca acatcgatcg tgagaagcat ggttgcctcg tgttactcgg
     3061 ttgattccga ctctcgtgat gactggagta ccagcgatcc agttcgtatg cgcgcaaccg
     3121 agtcggcaag ctctaccagc agctcaccgg tcggcgcgat tcccatcaca cgtccgcgta
     3181 gaggctcgat gcacatgcgt ccgcgcgcca gatcgcgcgc agcatattca ttcatctcgt
     3241 cctgcgtgag cggacccgac atcgacgccg cgccgcgcag ctcggggagc aacgcgcaga
     3301 caacgtcgat gcgcgaagtt ccagcttcga gcactgctgc cgcttgatca ggcggtggat
     3361 ccatgttgac accgaggccg atggcgaccc agtcaagccg gtcgccgcgc cagcgcgcct
     3421 ccaccagaac tccggcgagt ttcgcactat cgacgtacag atcgttgggc cactttacac
     3481 gaaccggttc agcggcgaag gtatcgagtg cgcgtgctgc agcaagcccg attcgcagcg
     3541 acagaacatc gagtgcggac ggatccgctg gacgctcgat gagcgtcatc cacacgccgc
     3601 gcggtggcga tgaccagcgc ttcccgtttc gtccccggcc ggccgcctgc gaatccgcga
     3661 gcacgaccgt gccagccaca gctccgtcgg acgcgagcgc gtgtgcctcg tccatcgtgg
     3721 atcccaccac gtcgaacaat tcgatgcgtg gcacatcggc gcgctcggcc agctcggtag
     3781 ccgagaggcc gtcgtaccga atcgccggac gagtatcagc cgccgcgtgc atagtagatc
     3841 gcgagcacga cagcgccgag taggacgcgg tacagtgcga acgcgccgta cgaatggcgg
     3901 ctcacgtact tgagcagcac ggagatggcg agccagccgc tgatcgccga tgccgcgacg
     3961 ccaacgagca gcggcacgct cattcccgat tcacgcatga cgtgcggcac cttgagtacg
     4021 acggcggctg cgatgatggg catgctcagc aggaagctga acgccgccgc gccgttccgg
     4081 tcgagaccca gcgcgcgccc ggcagtgatg gtcgatccgg agcgcgacac acccgggatc
     4141 agcgcgaaca cctgagcaca accgataaga atcgcatcct tccacgtcat gtgtgtgatc
     4201 ggacgatccg cacgcgcaag gtaatcggca agccagagaa gaattccgag gacgatcagc
     4261 gcggtcgcga tcagcgcagg atttctgaac gcggtctccg ccttcttctc gagcagcaaa
     4321 ccgaatatcc caccagggat cgtcgcgact acaagaaacg cagcgcgctt ctgttcgacg
     4381 gtcacgatct tccgtgtgtg tatgatctgc cctgccgcac gcaacagtga catccactcg
     4441 ccggcgaagt accagagtac agcgatcagc gtaccgaagt gcagcgctac gtcgaacgac
     4501 aatccgggat cgggccagtg aaacagccac ggtgcaagcg caagatgtgc tgagctgctg
     4561 accgggagga actcggccaa tccctgaaga aggccgagta cgagcgcttg aaatattgtg
     4621 ggcatccagt ggggtcagtg ggcgtcggaa ggtagcttga gcgcgctgcg atacaattct
     4681 tcgtactgcg aaactacagt gtcgagcgcg aagcgcttgc gcgcgtcatc ggctccagcc
     4741 gcgcccatgt ccgcctggcg actcggatcg gtaatgatgg aaagcacgcc ggcggccatc
     4801 gaatccacat cgcctacagg gtacagcagg ccggtaacac cgttggttac aacttccgga
     4861 agtccgccgg aatcgctgcc gacgacgggg acgccggacg ccatcgcctc gagtgcactc
     4921 aagccaaacg attcgctcga cgtcggaagc agaaagacat cggcgctcgc cagtagcggt
     4981 gcgacggtct cgatcttacc cagaaagaat accgaattcc cgacgcccag tatgcgcgcc
     5041 tcatcctcgg cggccggccg ttccggacca tcacccacca tcacgagtat gctcggagtc
     5101 tccgcggcaa ctttcgcgaa gatgcgcacg acgtcccgca cacgcttcac agtgcggaag
     5161 ttggagatgt gcatcaacac cttgcgatcg ccggcgaacg gcagcagttc cggtctgctg
     5221 tacagagaac gatcgtaaac ggccggatcg acgaagttgg gaatcaccgc aacgcgacag
     5281 cctgtacagt ggaacgcgtt gaacgtctcc gcacggaggt actcggatac ggccgtgata
     5341 cgatcggatt tctcgatcga gaacttcgtg atcgcatgga aggacggatc ctgcccgacc
     5401 aatgtgatat ctgtcccgtg caacgtggtt acaacagcga cgtcggagtg ctcggctcgc
     5461 agcatctcgc gcgcgatcca ggcgctcgta gcgtgcggga ttgcgtagtg gcagtggagt
     5521 acttccacgc catgcatctt cacgacttcg tgcatctgca ctgcgagcgc aagatcgtac
     5581 ggcgggtact cgaagagcgg gtatgctccc acctgcactt catgaaaaaa cacgcgcggg
     5641 agaaacgacg gaaggcggaa tggctgccgg tagctgatga agtgaacttc gtgaccgcgc
     5701 gccgcgagcg ctatcccgag ctcggtcgcg accgctccgg atccgccata tgtcggataa
     5761 cacgtgatgc cgatcttcat ggtagttggt gcctgaacca ggttcgctgc cgtttcgcgt
     5821 actgccgtgt ctcgatgatc gcgcgctcac gcgcgtgagc gagtgaatat tctccttcga
     5881 gatggcgccg catcacacga taaccggaag ccttccatgc gattgcgtcg gcaggtacgc
     5941 tttgcatgag cgatgcgact tcatccagcc agccattctc cagcatctga tcgacgcgcg
     6001 cctcgatgtg atccctgagc tccggccccg gatcgactac ttcgtattcc ggtacgagcg
     6061 cgagatcggt tacaggtggt tcatcgtacg gcggatcgaa cagggacttg acgtagaacc
     6121 cggttcctcc gacgatgaca ggcaccttgc cgaggcgctc tgcatcgact atccagcgcg
     6181 ccgcatcgcg cgcccactgg taagcactgt agtgctcggt cggatcgacg acgttcaccc
     6241 cgaaatgtac gactcgggcg agctcttcag gagtcggctt ggctgtgcct atgtcaaact
     6301 ttcggtaaat ctgccggcta tccgccgaaa tgatggcgat gtccccgcgt gcggccgcct
     6361 ccatggcacg catggatttg cccgcggcgg tggggccgac gatcacccga atcctacgat
     6421 cggccaaaac gtctgtctac ttcgctccac gccagctgaa cgatggtgga gcggccatga
     6481 acgtcgtgcg cgggaaggtt cgtgtcgcga agcgcgatga acagcgcgcg catctccgca
     6541 cctgaaagca gatcgccgcc cttcacggcc gccttgcacg cgatcgtggc aaccagtctc
     6601 tcgtgcctac catgcgccga gggtgtacga tcaccggtca gcgacgcaag cgtatcgcga
     6661 aggcaccgct cggcgtcaaa gcgcggatgc ggcaccggca cggcgtgcac gatcagtgag
     6721 ttaccgccaa acgcgtcgat ctcgaagcca agtctgtcga agtactgacg gttgagatcg
     6781 aacgcttcaa gctcctgcgc cgacaacgta agcgtgaatg gaagaagcag tcgctgcgag
     6841 ttcgccgatc cccgctcgat gtcctgcatg aactcttcgt acaacacacg ctcatgcgcg
     6901 gagtgctgat cgatgagcac gacgccatct tcgtgctcga acattatgta ggtacgacga
     6961 agctgcgtga gcggcggaat gctgtcatct tcgcgcgtcc tgtcagcggt cgcaacatcg
     7021 cgcgcagcag tttcgtcccc ttcaacgtgc gacgagccat ttaccgagcc gacgggccgg
     7081 aagagcggcg tgtcgttcgt ctgcggggcg agaacctggc tctcgaccac ctgaacgggc
     7141 tcggatgcag ctgcgattcc accgaagaac gatctgccca tcgacgccga gctgtcgaag
     7201 gatccaagtg cgcggcgcac cgcgcgttcc accgcgcgct cgacggtcca tcgatcctga
     7261 aatcgaatct cggccttggc cggatggacg ttgacgtcga tcgaatccgt cggcacggaa
     7321 acttcgaggt acagagccgg ccgggtgccc gccggaatcg tcgatctgta cgccgtctcc
     7381 gcgccgcgta cgatgccggc gtcgcgtatc gcgcgcccgt tgacggaaag gaacacgcgc
     7441 cgcgtggcgg ttccgacatt cgcaggacgc tctacaagac ctgacacgtg aatcggccct
     7501 gccacatcgt ccacatccag caggccatcg gcgtactgga ctccccagag cgcgccgagt
     7561 cgcacacgca gcgacgacgc gggaggcgcg gtgaacgcgc gtcgtccgtc atgcgacaga
     7621 tcgaaacgaa tgtcacgacg cgtgagggcg agcgtcatta cgatttccga tatcgcgcgc
     7681 cactcggagc gacttccgcg caggaacttg gcacgcgccg gcgcgttgta gaagaggtcg
     7741 gtaacggtga cggtcgtgcc gcggcgccgt tgcgtcggcg cgacggctgg aggcccgccg
     7801 ccggcggccg tcaggcgcgt gccgcttcca tcctgcaacg cagtttcgat ctcgatgcgc
     7861 gacaccgagc agatcgcggg cagcgcttcc ccgcgaaatc cgaaagtccg cactcctgtg
     7921 agatctgcgg acgtgcgaat cttggatgtc ccgtgccggg cgagcgagag tacagcgtca
     7981 tcggggtcca ttccggcgcc gtcgtcgctt atccgaatga gcgcgcggcc gccttcctgc
     8041 acggtgattt ccaccgcacg tgcgcccgca tccatcgaat tttcgacgag ctccttgacc
     8101 accgatgcgg gacgctcgac gacctcgccg gcggcgatct gatcggccac cgcgctggga
     8161 aggacactga tcactgg
//
LOCUS       DATIMD010000211         1784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3255506, whole genome shotgun sequence.
ACCESSION   DATIMD010000211 DATIMD010000000
VERSION     DATIMD010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3255506"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..237
                     /locus_tag="VLI40_04820"
     CDS             <1..237
                     /locus_tag="VLI40_04820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96528.1"
                     /translation="RKLASVLGDLHDVDVNARNETLLVLNPNQQKKAEQLEEQADAPV
                     VPNNAAERGAGGGGRRGGGRPGGGMGGMNGMGNP"
     gene            316..1485
                     /locus_tag="VLI40_04825"
     CDS             316..1485
                     /locus_tag="VLI40_04825"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSU96529.1"
                     /translation="MPVSRTRASFLRGGACVASCVAAIIAALCAVAPTSLSAQTDRGT
                     ARIDGSVNASIQTSILLVDETGSLVAGTMTDENGGYALRAPRRGSYRVRARRIGFAPV
                     FSRPLAVAAGATVNFDPSMRLLPATLAEVNVQETERCVIAPEAGAAALALWEAVQNAL
                     SGAAASSISGTHSFMLTRFQRELHPQTGKVLTKSSWKVLVSGSETYRSLPADSLAAAG
                     YLEHAAHDTVYYTAPDARTLISDAFARTHCLHPVAGSTGSGSVGLAFEPIDIGGRTDV
                     AGTLWLERSTGKLQYLQFQYVDSSTRSGDSTDTIPRATGTIHYRELEDGSWIIDNWTI
                     TVPVIAYYAQSPRQRGSGDNTDSTKMQPRPYVERLHEFGGNVTEVIMPRSNSRNP"
     gene            complement(1507..>1784)
                     /locus_tag="VLI40_04830"
     CDS             complement(1507..>1784)
                     /locus_tag="VLI40_04830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96530.1"
                     /translation="VNAIDSTRSMTRLTPELIAQLAPDVIIATDVGFDRVGSADKFAS
                     LPGVNLTPAGRNKRIYRINEQELLYFGPRTPATVRELVPMVHPLAAK"
BASE COUNT          349 a          530 c          567 g          338 t
ORIGIN      
        1 cgcaagcttg catcggtact tggcgatctt cacgacgtcg atgtgaacgc gcggaacgag
       61 acgctgctcg tgctcaatcc caatcagcag aaaaaggccg agcaactcga agaacaggca
      121 gacgcaccgg ttgtgcccaa caacgcggcc gagcgtggcg ccggcggggg cggacgccgc
      181 ggcggtgggc gacctggcgg tggaatgggt ggaatgaacg gaatgggtaa tccgtgattg
      241 cgtccttgta acactgcagt ggcaaggcat ccgacgcgct gaaggcgcga ctgtagattc
      301 gggggcgtgg acttgatgcc tgtatcccgc acccgagcgt cttttctgcg cggcggcgcg
      361 tgcgttgcaa gctgcgtcgc ggctatcatt gccgcgctct gcgctgtagc accaacgtca
      421 ctgtccgcac agactgatcg cggtaccgcg cgcatcgacg gaagcgtgaa tgcgtcgata
      481 cagacgagca ttcttctcgt cgatgaaacg ggatcgctcg tcgcggggac gatgaccgat
      541 gagaacggcg gctacgcgct tcgcgcgccg cggcggggtt cctaccgagt acgtgcgcgc
      601 cggatcggct tcgctccggt attctcccgg ccactcgccg tcgcggcggg agcaaccgtc
      661 aacttcgatc cgtccatgcg attgcttccg gcgacactcg cagaggtgaa tgttcaggag
      721 acggagcgat gcgtcatcgc acccgaagct ggtgccgctg cactggccct gtgggaagcg
      781 gtgcagaatg cgctgtccgg cgctgccgcg agcagcatta gtggaacgca ctcattcatg
      841 ttgacacggt tccagcgcga gctgcatccg cagacgggaa aggtcctgac caagtcgagc
      901 tggaaagttt tggtgagcgg gtcggagacg tacagaagcc tgcctgcaga ctcgctcgcg
      961 gccgctggat acctcgaaca cgcggcgcat gacactgtct actacacggc gccggatgcg
     1021 cgtacgctca tctccgatgc attcgcgagg acacactgtc tgcatccggt ggccggctca
     1081 accggctcgg gctcagtcgg tctcgcgttc gaacccatcg acatcggcgg acgtaccgac
     1141 gttgcaggaa cgctatggct ggagcgtagc acggggaagc tgcagtacct gcaatttcag
     1201 tatgtagatt cgtcgactcg cagcggcgac tcgaccgaca cgattccgcg cgcgaccggc
     1261 acgatacact accgcgagct cgaggatggg agctggatca tcgataactg gacgatcaca
     1321 gtgccggtca tcgcctacta cgcgcaatct ccgcggcaac gcggttccgg cgacaacact
     1381 gattccacaa aaatgcagcc acgaccgtac gtggaacgct tgcatgaatt tggcggcaac
     1441 gttaccgagg taatcatgcc gcgcagtaat tcgcggaatc catgagtcgt tgccgagtca
     1501 ttgctgctac tttgcagcca gcggatgcac catcggtacg agctcgcgca ctgttgcggg
     1561 cgtgcgcggt ccgaagtaaa gcagctcctg ttcgttgatt ctgtaaatgc gtttatttct
     1621 gcctgctggc gtgagattca cgcccggcag cgacgcaaac ttgtcggcgc tgccgacgcg
     1681 atcgaatcca acgtcggtcg cgattatcac atccggcgca agctgagcga tcagctctgg
     1741 tgtgagcctc gtcatggatc tggtcgagtc gatcgcattg acgg
//
LOCUS       DATIMD010000212         6233 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_368423, whole genome shotgun sequence.
ACCESSION   DATIMD010000212 DATIMD010000000
VERSION     DATIMD010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6233
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368423"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..569)
                     /locus_tag="VLI40_04835"
     CDS             complement(<1..569)
                     /locus_tag="VLI40_04835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96531.1"
                     /translation="MTAAAGAKRVVTADPVIGSYQPRFAGLWATLAYAIATLALGLPA
                     LAGQFLVGPHSDQYIAGYAFREFAASTLKATGSFPLWNPYQFGGMPFVAAMHGDIFYP
                     TFLLRMVLPTDVAMTWGFMIHIFLAGAFTYMFMRRANFSFAGALVGGLAYMLSGHIAT
                     YVNPGHDGKLFVAALFPLLLWTIIAWVRDG"
     gene            complement(566..1480)
                     /locus_tag="VLI40_04840"
     CDS             complement(566..1480)
                     /locus_tag="VLI40_04840"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HSU96532.1"
                     /translation="MRIAQVVFAILVVIFASIAISKRWDMIRDRVATINVDWVSLIEA
                     SLLVFLAYAVLVETWRRVLAAWDTQLPWWTAARIWFAASLGKYIPGNLWSLAALGVMA
                     RETGASSVAAAGSSIIVNVFNLVSGLALVLIFASRLVPHAAVFAIVAVVSVSGVLAAP
                     MWLPAAVRIACKVTKRDIRLPVIPPSTVWWSLAGTSFAWCAYGEAFRLFAIAILGRSA
                     VHGGVVLYIAAYTAAYIVGFITLIAPAGLGVREAGIWEGLPLLGLTTYGDAVIVAIMS
                     RLWLTILEVIPGLIALAAGHLRPPTRSK"
     gene            complement(1485..2648)
                     /locus_tag="VLI40_04845"
     CDS             complement(1485..2648)
                     /locus_tag="VLI40_04845"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSU96533.1"
                     /translation="MRALFVAHSFPRFEGDAAGSFILGLATALVNHGVEVRVIAPSAM
                     GLDRTSVIHGIEVLRFRYAPYSRETLAYRGTMADDVARSVVAKMALGSFIVSETRAIL
                     AQASAWKPDVIHAHWWFPNGVAASTASRLSGVPLITTSHGSDLRLLQHKPAARPLARY
                     VFRRSARVTCVSSWLAAQAAPFCRTAPIVAPMPVATSLFEPTEDRDGNRIIFVGRLSL
                     QKGIETAMRALALMKRSTVLDVIGDGPDRGRLVELADKLGLSDRIIWRGHVKHGELPR
                     LLARASVLIAPFVDEGLGLVAAEAQLCETPPVAFASGGLTDVIENNVTGVLVTPGDVD
                     GLAAGVGKILQDPSLRERLGRAGRVAALARFSPATVAERYAGIYRDAVSEHAK"
     gene            complement(2652..3617)
                     /locus_tag="VLI40_04850"
     CDS             complement(2652..3617)
                     /locus_tag="VLI40_04850"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSU96534.1"
                     /translation="MTSLPAAKLPRVSVLVPAKDEAENLPEFMRQAAEVFAAEPDKYE
                     VVVIDDGSTDATATVLAELEARYPFLRSVRHRTRRGIADALRTGYVHSHGDVLVFYPA
                     DLQFKPEDIPRLVEPILAGEFDMMTGRKEGEYEKAFVSGIYNGLSRKLFDVPVRDLNS
                     VKAYRREVMAALPVRPDWHRYMIVVAAHRGFTVGETPIPLYPRMAGKSKFGLSRIPVG
                     VLDMLAVWFELRFARKPLLFFGILGAGLFFIGVLTGIIAVLYRIIAGVGFRPLLTLVE
                     VCLLLGSVFFATGLLAELMAAQRAEIAELRRRVEELVGRDTDSPR"
     gene            complement(3614..5077)
                     /gene="rpoN"
                     /locus_tag="VLI40_04855"
     CDS             complement(3614..5077)
                     /gene="rpoN"
                     /locus_tag="VLI40_04855"
                     /inference="COORDINATES: protein motif:HMM:TIGR02395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HSU96535.1"
                     /translation="MRSSLSQSTQMRQDLKINPRLYQAMDLLYMPLLDLQQHLKQELL
                     NNPFLDLVEDDEEEETDAEDAVETVAEEPQVQEKDEIDWEEILLDGFDTGGHREEREE
                     REHFEPITVGTRDLGDHLRDQVALLELTPRQALIADEFIGNVNDDGYLAASVSEIVLA
                     LNDMARNAAEAAGRDISEDMLYTEAEGEEMLAIVQTLDPPGIAARDLKECLLLQLREA
                     GLQQSVPYRLVRDCFDELINHRWSEISKRFGISATDVQAAADEIAKLDPKPGLRYSTR
                     SDNYIIPDLVVDKIDDQYHVFLNDANLPRLKLSKAYQDIARDKKKFDGENKEFISSKL
                     NSANWMIQAIEQRRQTMLKVMNYIVERQREFFEKGVQFLKPLTLREVAEVINMHESTV
                     SRVTNEKYVQTPRGVLPLKFFFSSGLATADGEDVSARGIKAQLQKLVEDEDPKHPLTD
                     QAIVNILRESGVQIARRTVAKYRDQLGVLPARMRKRV"
     gene            complement(5074..>6233)
                     /gene="lptB"
                     /locus_tag="VLI40_04860"
     CDS             complement(5074..>6233)
                     /gene="lptB"
                     /locus_tag="VLI40_04860"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR04406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HSU96536.1"
                     /translation="RSSVLALEALVRCADDTGAATLNDIAIGYRDEYLRTLRDEGKDA
                     QREAGRLSLDEVRAYLTTWVLPRLATDKVVILPPGDVGDYTKVRLSDSLWSDIAPLRA
                     QVADMLRQTGEFPRPATGHIALEDRSPGRSTLDAEGLVKIYRRRKVVNDVAVHLKQGE
                     IVGLLGPNGAGKTTTFYMIVGLIQPLEGSIKLDGQDITEMPMYKRARKGIGYLSQEPS
                     IFRKLSVEDNILAILETLPLSQSEREERLERLLDELSIKRLRKSKAYALSGGERRRLE
                     ITRALVTDPKFMMLDEPFAGVDPIAVHDIQTIVSGLRQRNIGVLISDHNVEQTLDIVD
                     RAYIMFDGQVKVSGTVRDLVFDDTVAKIYLGPTLTARLRERFAGGGTGAHV"
BASE COUNT         1215 a         1951 c         1897 g         1170 t
ORIGIN      
        1 ccgtcccgta cccacgcgat gatggtccag agcagcagcg ggaagagtgc cgctacgaag
       61 agcttgccgt cgtggcccgg atttacgtag gtcgcaatgt ggccgctcag catgtacgcg
      121 aggccgccga cgagcgctcc ggcgaaactg aagtttgcgc gacgcatgaa catgtacgtg
      181 aatgcgccgg ccagaaaaat atgaatcatg aaaccccacg tcatcgcgac gtccgtgggg
      241 agaaccattc tcagcaggaa tgttggatag aaaatgtcgc catgcatcgc ggcgacgaac
      301 ggcatcccgc caaactggta agggttccag agcgggaacg atcccgtagc cttgagcgta
      361 ctggcggcga attccctgaa cgcgtaaccg gcgatgtact ggtcgctatg cggtccgacg
      421 agaaactgtc cggcgagcgc ggggaggccg agcgccaagg tggcaatcgc gtacgctaga
      481 gtcgcccata gtccagcgaa tcgaggctgg taggagccga tcaccggatc ggcggtaact
      541 actctctttg cgccagcggc tgccgtcatt tggaacgggt tggaggtctc aaatggcccg
      601 ccgcgagtgc gatgagaccg ggtattactt ccagtatcgt gagccacagg cggctcatga
      661 tggcgacgat tacggcgtcg ccatatgtgg tcagccccag cagcggcaat ccttcccaga
      721 tccccgcctc gcgtacgccc agtcccgcag gggcaatcag ggtgatgaat ccaacaatat
      781 acgcggccgt gtatgcggca atgtagagta cgactccgcc gtgcactgcg ctgcggccga
      841 ggatcgcgat ggcaaacagg cgaaaggcct cgccgtacgc gcaccatgcg aaggatgtgc
      901 cggccagcga ccaccacacg gtacttggcg gaatcacggg aagccggatg tctcgcttgg
      961 taaccttgca ggcaatgcgc accgcggccg gaagccacat cggcgcggcc aggaccccgg
     1021 agacagacac gacggcgacg atggcgaaca ctgctgcgtg cggcaccagg cgcgacgcga
     1081 agatgagtac gagtgcgagg ccggagacga gattgaagac gttgacgatg atcgacgatc
     1141 cagcggccgc gaccgacgat gcaccggtct cgcgggccat cacgcccagc gcagcaagcg
     1201 accacaggtt tcccggaatg tatttgccga ggctcgccgc gaaccagatg cgcgccgcgg
     1261 tccaccacgg caactgtgtg tcccacgcag ccagaacccg gcgccatgtc tccacaagta
     1321 ccgcgtacgc gaggaagacg agcagcgaag cttcaatcaa cgagacccaa tcgacgttga
     1381 tcgtggcgac gcgatcccgg atcatgtccc accgcttgga gatcgcgatg ctcgcgaaga
     1441 tcacaacgag aatcgcgaac accacctggg caattcgcat ccacctactt cgcatgttcg
     1501 ctcactgcat cacggtaaat ccccgcgtat cgctcggcaa cggtcgctgg cgagaaacgc
     1561 gcgagcgcgg ccaccctgcc cgcccttccg agtcgctcgc gcagagacgg gtcctgcaga
     1621 attttcccga cgccggcggc aagcccatcg acgtctccag gtgtgacaag aacgccggta
     1681 acattgttct cgatcacgtc cgtgagacca cccgaggcga atgcaaccgg tggcgtctcg
     1741 cacaactgcg cctccgccgc gacgagtccg agtccttcat cgacgaacgg tgcgatgagc
     1801 acggaagcgc gagcgagcag ccgcggcagc tcgccgtgct tcacatgtcc gcgccatatg
     1861 atgcgatcag acaatccgag cttgtcggca agctcgacca gtctccctct gtccggtccg
     1921 tcgccgatca cgtcgagcac cgtgctgcgc ttcatcagcg caagcgcgcg catcgcggtt
     1981 tcgattccct tttgcagcga caggcgtccg acgaaaatga tgcggttccc gtctctgtcc
     2041 tccgtcggct cgaacagcga tgtcgcgacc ggcatgggag cgacgatcgg agcggtgcgg
     2101 cagaacggcg cggcctgcgc tgcaagccag ctcgaaacgc aggtcacgcg cgcggagcgc
     2161 cgaaacacat atcgtgcgag tggacgtgcg gcaggtttgt gctgcagcaa tcggagatcc
     2221 gatccatgtg aagtggttat caacggaacg ccggacagcc ggctcgcggt cgacgcggcg
     2281 actccgttgg gaaaccacca gtgcgcgtga atgacatcag gcttccacgc tgacgcctgc
     2341 gccagaatcg ctcgtgtttc cgatacgatg aatgatccga gcgccatctt cgcaacgacg
     2401 gatcgtgcaa cgtcatcggc catggtgccg cgatacgcga gtgtctcgcg agaatacggt
     2461 gcgtagcgaa atcgcaggac ttcgattccg tgaatcacgc tcgttcggtc gagtcccatt
     2521 gccgacggcg cgatgactcg tacctcgacg ccgtggttca cgagcgccgt cgcgagaccg
     2581 agtataaatg atcccgcggc gtcgccctcg aaccgtggaa atgaatgcgc tacgaaaagt
     2641 gctctcacgc ctcagcgcgg cgagtccgta tcgcgaccaa cgagctcctc gactctccgc
     2701 cgcaactcgg cgatctcggc gcgctgtgct gccatgagct cggcaagaag gccggtagca
     2761 aagaatacgc ttccgagcag gaggcagact tccacgagcg tgagcagcgg ccggaatcca
     2821 acgcccgcga tgatgcggta aagcaccgcg atgatcccgg tcagcactcc gataaagaag
     2881 agtcccgcgc cgagtatgcc gaagaacagc aatggcttgc gcgcgaagcg cagctcgaac
     2941 cacaccgcca gcatgtcgag cacgcccacg ggaattctgc tcagaccgaa cttggatttg
     3001 ccggccatgc gcggatacaa cgggatcggt gtctcgccga cagtaaagcc gcgatgcgca
     3061 gcgacaacta tcatgtagcg atgccagtcc ggacgcaccg ggagcgctgc catcacttcg
     3121 cgccggtacg ccttgaccga attgagatcg cgcaccggaa cgtcgaacaa cttgcggctc
     3181 aggccattgt aaatgcccga aacgaacgcc ttctcatact ccccctcctt tcgaccggtc
     3241 atcatgtcga attcaccggc gagaatgggc tcgacgagtc tggggatgtc ctccggcttg
     3301 aactgcaggt ccgcgggata gaacacgagc acatcaccat gtgaatgcac atatcccgtg
     3361 cgcaacgcgt cagcgattcc gcggcgggtg cgatgtctca cggagcgcag gaacggatat
     3421 cgtgcttcca gctcggccag caccgttgcg gtggcatccg tagagccgtc gtcgatcacg
     3481 accacttcgt acttgtcagg ctcggccgcg aacacttccg ccgcctggcg catgaactcc
     3541 ggcaaattct cggcttcgtc ctttgcgggg acgagcacac tcacccgtgg aagcttcgcc
     3601 gccggaagcg acgtcatacg cgcttgcgca tacgtgcggg cagcacaccg agctgatcgc
     3661 ggtacttggc gacggtgcga cgagcgatct gaacgccgct ctcacgcaga atgttgacga
     3721 tcgcctggtc cgtgagcgga tgcttgggat cctcgtcctc gacgagcttc tggagctgcg
     3781 cctttatgcc gcgcgcggag acatcctcgc cgtcggcggt cgccagtccg gacgagaaga
     3841 agaatttcaa cggcagcacg ccgcgcggcg tctgcacgta cttctcgttc gtcacacgac
     3901 tcaccgtgga ctcgtgcatg ttgatcacct cggcgacttc acgaagcgtg agcggtttga
     3961 gaaactgaac acccttctcg aagaactcgc gctgccgttc gacgatgtag ttcatgactt
     4021 tcagcatcgt ctggcggcgc tgttcgatcg cctgaatcat ccagttcgct gaattgagct
     4081 tgctggagat gaactccttg ttctcgccgt cgaatttctt tttatcgcgc gcgatgtcct
     4141 gatacgcctt gctgagcttg agccgcggca gattggcgtc gttcagaaat acatgatact
     4201 gatcgtcgat cttgtcgacg accagatcgg ggatgatgta gttgtccgac cgtgtgctgt
     4261 agcggaggcc aggcttgggg tccagtttcg cgatctcgtc ggcggccgcc tgcacatcgg
     4321 tcgcgctgat tccgaagcgc ttggagatct cgctccagcg gtgattgatc agctcatcga
     4381 agcagtcgcg caccagacgg tacggtaccg attgctgcag acccgcttca cgaagctgaa
     4441 gcagcaggca ctccttgaga tcacgtgcgg ctatgcccgg tggatccagc gtctggacga
     4501 tcgcaagcat ctcctcgcct tcggcttcgg tgtaaagcat gtcttcgctg atatcccgac
     4561 cggccgcctc cgccgcgtta cgcgccatgt cattgagcgc gagaacgatc tccgagaccg
     4621 acgcggcgag gtagccgtcg tcgttgacgt tgccgatgaa ttcgtccgcg atgagcgcct
     4681 ggcgcggcgt gagctcgagc agggcgacct gatcgcggag atgatcgccg aggtcgcgtg
     4741 tgccgacggt tatcggctcg aagtgctcgc gctcctcacg ctcctcacgg tgaccgcccg
     4801 tgtcgaagcc gtcgagcagg atctcctccc agtcgatctc atccttctcc tggacctgcg
     4861 gctcctcggc cacggtctcc acggcatctt cggcgtcggt ctcttcctcc tcgtcgtctt
     4921 cgacgaggtc gaggaatgga ttgttcagca gctcctgctt gaggtgctgc tgcaggtcga
     4981 ggagcggcat gtacagaaga tccatcgcct gatacaagcg cggattgatc ttcaggtcct
     5041 gccgcatctg cgtggactgg ctgaggcttg atctcatacg tgtgctccgg tgccgccgcc
     5101 tgcaaatcgt tcgcggaggc gagcggtaag cgtggggccc aagtaaatct tcgcgactgt
     5161 gtcgtcgaag accaagtcac gaaccgtgcc ggaaaccttc acctgtccat cgaacatgat
     5221 gtaggcccgg tcgacgatgt cgagtgtctg ctctacgttg tgatcgctta tcaggacgcc
     5281 gatgttgcgc tgcctgagtc ccgagacgat cgtctgaatg tcgtggacag caatcgggtc
     5341 cacgccggcg aacggctcgt ccagcatcat gaacttggga tcagtgacga gcgcccgagt
     5401 gatctcgagg cgccgtcttt cccctcctga aagtgcgtac gccttgctct tgcgcaggcg
     5461 cttgatactg agctcgtcga gtagtcgctc gagcctttct tcccgttcgg actgcgacaa
     5521 gggcagcgtc tcgagaatgg cgaggatgtt gtcctccacg gacagcttgc ggaagatcga
     5581 cggctcctgc gacagatatc caatgccctt gcgtgcgcgc ttgtacattg gcatttcggt
     5641 gatatcctga ccatccagct tgatactacc ctccagcggc tggatcagtc ccacgatcat
     5701 gtagaacgtc gtcgtcttgc cggcgccgtt gggcccaagc aagccaacga tctcgccctg
     5761 cttcagatgc acggcgacgt cgttgacgac cttgcggcgc cgatagatct tcacgagtcc
     5821 ctcggcatcg agcgtgcttc tgccggggct gcggtcctcg agcgcgatgt gaccggtcgc
     5881 gggtcgcggg aactcgccag tctgccgcag catgtcggcg acctgtgccc ggagcggtgc
     5941 gatatcactc cagaggctgt cggagagcct gaccttggtg tagtcgccga cgtcgccagg
     6001 cggaagtatg accaccttgt cggtcgccaa ccgcggcagc acccatgtgg tgagataggc
     6061 gcggacctcg tcgagactca gccgccctgc ttcgcgctgc gcgtccttgc cttcatcccg
     6121 cagcgttctg aggtactcgt cgcggtaacc gatcgcgatg tcgttgagcg ttgccgcgcc
     6181 tgtatcgtcg gcgcatcgca cgagcgcctc gagcgcgagc actgacgagc gct
//
LOCUS       DATIMD010000213         8674 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_369554, whole genome shotgun sequence.
ACCESSION   DATIMD010000213 DATIMD010000000
VERSION     DATIMD010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8674
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369554"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..790)
                     /locus_tag="VLI40_04865"
     CDS             complement(<1..790)
                     /locus_tag="VLI40_04865"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HSU96537.1"
                     /translation="MATAAAVPANASESEELNPYRWIILGGLITAAIMEVLDTTIVNV
                     ALPQMAGNLGATLQEIGWVLTGYILSNVVVLPMTAFLTETFGRKNYLTASIIIFVVAS
                     FLCGTSTSLTEIVVWRIVQGAGGAALLSTAQATIRQIFPRDQQGMVQAIFILGIIVAP
                     TLGPTLGGWITDNYSWNWCFFINIPIGIVSAFLVSSFLHDPPGKRGREGGIDFVGILL
                     LMVGVGSLQYVLEEGNRNDWFSDPLILRLSVLSGICLVVMLWWEL"
     gene            complement(827..2845)
                     /locus_tag="VLI40_04870"
     CDS             complement(827..2845)
                     /locus_tag="VLI40_04870"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HSU96538.1"
                     /translation="MPEYARYRKLSAEIFGSVTSAAIRPVWVDSGKAFEYEFGGQRYR
                     YDIAKRAATPSGAVDAAAEMAARRARFIGGPDRGRQFESALSPDGKRKAFYRDRNMWL
                     SDASGSGEIALTTDGSVANRIKNGTASWVYGEELDQRTAMWWSPDGSRVAYYRFDESK
                     VPDYYIGMNQTRLHTTVDVEAFPQPGVPNPVVDLFVYDVAKKTTTRIDVRDGKPFDNT
                     VVGHYVYHVDWSPDGHEITFNRTNRRQNILEFTACDPSSGHCRAVVRDEWPASWVANN
                     PEMTYLADGRRFVWESERNGFRNYYLYDLTGKLLATLTRNEFDAGEIVRIDEKAGAMY
                     YTAHDGDNAMKMQLHRVGLNGRNDRRLTDPGFSHTISFAPDGRYFVDVAQTHDQPPVA
                     RLVAADGKIVAQIAKSDMTRFDQLGLKRVEMFSYKAGDGTTVLNGMLHFPSNFDPNRK
                     YPLLVSVYGGPNTNGASENFTLPNRLTELGFLVATLDSRSADGRGKHFLDAIYEKLGI
                     TEIDDQAAGVRALDTRPYVDRNRVGIYGTSYGGYASLMSLLRYPDLFAAACSMSPPTD
                     WRNYDTIYTERYMWIPEENAAGYDAGSAMTYASQLKGRLMLYYGTADNNVHNSNTMQM
                     VTALQKAGKSFDLQVGPDEGHSALNTERMMEFFIDNLPAGTNVSVASH"
     gene            3113..6193
                     /locus_tag="VLI40_04875"
     CDS             3113..6193
                     /locus_tag="VLI40_04875"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HSU96539.1"
                     /translation="MDRRSLALALLLPLISAPSAMSAQASRGSSVEISTAAPGRDPSQ
                     PIDTAYTNRIHEYTTESFFLSPLVDYLPASATVPTPKAVLGDIAGAKDNLPYSKDVYA
                     YMRMLAKASPRVRVYSIGTTEEGREMIAVAVASESLLTRLDDNKAKLSKLADPRTINM
                     DDAQAEQIIGGVTPIYYITGTIHSTESGAPTALMELAYRLAVDESPYIRNIRNNVITL
                     ITPIVEVDGRDRMVDLFRWHMAHPNDTYSNLIYWGHYVAHDNNRDAMGLTLKLSQNVL
                     NTYVDWRAMVLHDLHESGSYLYDNTIGDGPYNAWLDPLLTNEWQMIGWNNVQEMTRMG
                     MPGVFAHGDFDTWSPGYLMFIAATHNGISRLYETFGNGGTAETLERTLPPSETSRTWF
                     RQNPPLPRVMWSLRDNNNYEETGLLVSLSYFANNRHQLLENFYQKSKRSILKAHTEGP
                     AAYILSSADPRPGAQAELLRILQLQRVEISRASAPFTVKVPVHNAHAKRSGGADSAAT
                     GAATGAATGAATGATPTETRQFPAGSYIVRMDQPYSRIADALLDYQFWSPNDPQKTPY
                     DDTGWTFPENFDVQAVRVVDPQVLTVPMERVTGTIQAPGGVSGTGTVFAINNNGDNAL
                     TTLRYRLRGADFQAAEEPFQAAGRSFNRGSYVVRNVAPSELDKAARELGVSVYAIASA
                     PSVAMHPARAARVAILHTWSSTQTEGWWRQAFDAAHVPYSYINVQDVAKDPNLNAKYD
                     VILFPPSGNAQSIVQGMPMWRNAMPWKTTPLTPNIGKLDHTDDIRPGLGLVGVQNLEG
                     FVTRGGVLVTVSSTADFAIQYGLASGVSANQAGRGKIVGSLLRTRIVDDASPLVYGVS
                     DSLAVYSEDGESFSVSSTRGGGRGSRFGGGEAVRATGRGTVDDPDVPQGRPQLAPRNM
                     APPRVTVEPWQAAPITDEQLRNPLSIIPPNQRPRVALRFTDQRNLLVSGLLDGGSDVA
                     QRPVVVDVPMQKGHVVLFANNPIYRGETIGAYPLVFNAILNFDHLDAGRKLDAK"
     gene            6433..7143
                     /locus_tag="VLI40_04880"
     CDS             6433..7143
                     /locus_tag="VLI40_04880"
                     /inference="COORDINATES: protein motif:HMM:NF014427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HSU96540.1"
                     /translation="MYASDASRRLEYYVAPAHASKQVSKQVSKRAWVALLIIAVGCGD
                     GQIVGPGTPGNGGGTAVASVAVSPASASLLVGVVDSTKLGTVAITPTVKDASGNVLSG
                     QTVTWSSSSDTVAKVSSAGVVTAVKPGTATITAATGGQSGSASITVTRAVVDTITVTP
                     LTSTLKVGTSETLVVALLDAQGHVLSGGRPIVEFNNSPSIITASGGTITGVAPGTGTI
                     TYKSENNTVTIATITVTQ"
     gene            7321..7992
                     /locus_tag="VLI40_04885"
     CDS             7321..7992
                     /locus_tag="VLI40_04885"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HSU96541.1"
                     /translation="MKQLWRGVRAIAIAGGAILVAGSAAGAQVTFTGNTFGCFYTSAT
                     APTDCSGLIATTGGLSYSGSTFNVTSNPADGLVSIGTAPATPNINNLGSFKLVDGDHD
                     YTGENFALFMDFTQPTGVMGNHLYTAMVTGNLSNATSGNVFIDFVNTPHDFAFADGTT
                     LSFSVDDVSINDQTAAGTGTTVAVTGHGFTHLNAATVPEPSSLALLGTGLIGIVPLFR
                     RRRKV"
     gene            8047..>8674
                     /locus_tag="VLI40_04890"
     CDS             8047..>8674
                     /locus_tag="VLI40_04890"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HSU96542.1"
                     /translation="MLALFTYPDIEIGTLPDGRSIRTLIAAAVAMLCGCSKSTPFANG
                     APATAFPSHPFDHFILIVLENEDAATIERIPYMDSLGRAGATLRAYFAVAHPSYPNYL
                     ALVAGRTFSTADPGVKHDAEAYNSRDFGDAQLLIDAPTIADRLEAKGLTWDAFAEDYP
                     DTSATPSSCYFGRARGNYARKHVPFLSFTEFHTRPQMCAHVRNMRWFNK"
BASE COUNT         1756 a         2599 c         2641 g         1678 t
ORIGIN      
        1 acagctccca ccagagcatg accacgagac agatcccgga gaggaccgag aggcgcagta
       61 tgagggggtc cgagaaccag tcgttgcggt tgccttcttc gaggacgtat tgcagggatc
      121 ccacgcccac catgagcagc aggatgccca cgaaatcgat tccgccttcc ctgcctcgct
      181 taccgggtgg gtcgtgcaga aaactgctga ccaggaaggc cgaaacgatt ccgatgggaa
      241 tgttgatgaa gaaacaccag ttccagctgt aattgtcagt tatccagccg cccagtgtgg
      301 gtcccagggt cggggcgacg atgatgccga gtatgaaaat cgcctgcacc atgccctgct
      361 ggtcgcgcgg gaagatctga cggatcgttg cctgcgcggt ggaaaggagt gctgcgccac
      421 cggcgccctg gacgattcgc cagacgacga tctcggtgag gctggtggaa gttccgcaga
      481 gaaacgacgc aacgacgaag atgatgatcg acgccgtgag atagtttttc cggccgaagg
      541 tttcggtgag gaacgccgtc atcgggagga cgacgacgtt cgagagtatg tagccagtga
      601 gaacccagcc gatttcctgg agcgtggcgc ccaggtttcc ggccatctgg ggcagtgcga
      661 cgttgacgat ggtggtgtcg agcacctcca tgatcgcggc cgtgatcagg ccgcccagga
      721 tgatccagcg gtaggggttc agctcctccg attcggaggc attcgcgggt actgctgctg
      781 cggtcgccat tgatccaatg aagaaaaacg gcgaccgcga attgggctag tggctggcga
      841 cagatacgtt cgttccggcc ggcaaattat cgatgaagaa ttccatcatc cgctcggtat
      901 tgagggcgga atggccctcg tccggcccga cctgcaggtc gaagctcttg ccggccttct
      961 gcagggcggt gaccatctgc atggtgttgg agttgtggac gttgttgtcg gccgttccgt
     1021 agtagagcat gaggcgtccc ttgagctggg aggcgtaggt catcgcgctt ccggcgtcgt
     1081 atcccgcggc attctcctcg ggaatccaca tgtagcgctc ggtatagatg gtgtcgtagt
     1141 tacgccaatc ggtcggcggc gacatgctgc acgcggcggc aaagagatcc gggtaacgca
     1201 gcagtgacat gagcgaggcg tatccgccgt acgacgtgcc atagataccg acccggttgc
     1261 ggtcgacgta cgggcgtgta tcgagtgcgc ggacgcctgc cgcctgatcg tcgatctcgg
     1321 tgatcccaag cttctcgtag atggcatcga ggaaatgctt gccgcggccg tcggcgcttc
     1381 tggaatcgag agtggcaacc agaaatccga gctcggtaag ccggtttggg agcgtgaagt
     1441 tctcacttgc gccgttggtg ttggggccgc cgtacacgct gacgaggagc ggatacttcc
     1501 tgttagggtc gaagtttgaa ggaaagtgca gcattccgtt cagcaccgtc gttccatcgc
     1561 cagccttgta gctgaacatc tcgacacgct tgaggccgag ctggtcgaat ctggtcatgt
     1621 cgctcttcgc gatctgcgcg acgatcttgc catccgcagc aacgagccgt gctaccggcg
     1681 gctggtcgtg ggtctgcgcg acatcgacaa agtatctgcc atccggtgcg aaactgatcg
     1741 tgtgactgaa gccaggatcg gtaagacgac ggtcgttgcg gccattaagg ccgacgcggt
     1801 gcagctgcat cttcatcgcg ttgtcgccgt cgtgggcagt gtagtacatg gcgcccgcct
     1861 tctcgtcgat gcgcacgatt tctccggcat cgaattcgtt gcgggtgaga gtcgcaagca
     1921 acttgcctgt caggtcgtac agatagtaat tgcggaatcc gttgcgctcg gattcccaca
     1981 cgaagcgcct gccgtcggcg agataggtca tctccggatt gttcgcgacc cagcttgcgg
     2041 gccactcatc gcgcacaact gccctgcaat gtccactgga cggatcgcag gcggtgaact
     2101 cgagaatgtt ctggcggcga ttggtgcgat tgaaagtgat ctcgtgtccg tccggtgacc
     2161 agtccacatg atacacgtag tgaccgacga cggtgttgtc gaatggcttg ccgtcgcgca
     2221 cgtcgatgcg cgtcgtggtc ttcttggcaa cgtcgtatac gaacaagtcg acgaccgggt
     2281 tcgggacgcc gggctgcggg aatgcctcga cgtcaaccgt cgtgtgcagc ctggtctggt
     2341 tcataccgat gtagtaatcg gggaccttgc tctcatcgaa gcgataatac gcgaccctgg
     2401 acccgtccgg cgaccaccac atggcagtac gctgatcgag ctcctcgccg tacacccacg
     2461 aggccgtgcc attcttgatg cgattggcga cgcttccgtc ggtggtgagg gcgatctcac
     2521 ctgaaccgct ggcgtcgctc agccacatgt tgcggtcacg gtagaacgcc ttgcgcttgc
     2581 cgtccggaga gagtgctgac tcgaactgcc gaccgcggtc cggaccaccg atgaatcgtg
     2641 cgcggcgcgc agccatttct gccgccgcat cgacggcacc ggatggagtc gcggcgcgtt
     2701 tggcgatgtc gtagcgatag cgctgaccgc cgaactcata ctcgaacgcc ttgccgctat
     2761 cgacccacac gggccggatg gcggcgctcg tgaccgagcc gaatatttcc gcgctgagtt
     2821 tgcgataccg cgcgtactcc ggcatcgctc tcagccggtc ctgcgcgcga gccggggagc
     2881 catggagggc ccccgccgcg gccacaagcc cgaccacgcg tggaagcgtg atactacgaa
     2941 tcaaccgatc gatgaccatt cggatttttc catgggtaaa tgtgcagcgg tgcttcccta
     3001 ccgccggtat aatctgcatt ctgtacgtcc tgatgaccga ttctgcttta ccaccatctt
     3061 taccaccatc gtttctcacg ctatttccac cgtcctcccg atgagaatat tcatggatcg
     3121 tcgctcactc gccctcgcgc tgcttcttcc attgatcagc gcaccaagcg ccatgagcgc
     3181 acaggcatcc cgtggtagca gcgtcgagat atcgaccgca gcgccgggac gagatcccag
     3241 ccagccgatc gacacggcat acacaaacag gattcacgag tacaccaccg agtctttctt
     3301 tctgtcgccc ttggtcgact atctgccggc ttcggcgacg gtaccgacgc cgaaagctgt
     3361 gctgggcgac atcgcgggcg cgaaggacaa ccttccatac tcgaaggacg tgtatgccta
     3421 catgcggatg ctggccaagg cgagcccgcg ggtgagagtg tactcgatcg gcacaacgga
     3481 agaaggacgt gaaatgatcg ccgtggcggt tgcatccgag tcgctgctca ccagactcga
     3541 tgacaacaag gcgaaactct ccaagctggc cgatccgcgc acgatcaaca tggacgatgc
     3601 gcaggccgag cagatcatcg gtggggttac gcccatctat tacatcacgg gaacgatcca
     3661 ctccacggag tcgggtgctc ccactgcgtt gatggaactc gcctaccgac tcgcagtcga
     3721 cgagagtccg tacattcgca acattcgcaa caacgtcata acgctcatca cgccgatcgt
     3781 cgaagtcgat gggcgcgacc ggatggtcga tctgtttcgc tggcacatgg cgcatccgaa
     3841 cgacacctat tcgaacctga tctactgggg ccactatgtc gcgcatgaca acaaccgcga
     3901 tgcgatggga ctcacgctca agctgtcgca gaacgttctg aacacgtacg tcgactggcg
     3961 cgcgatggta ctgcacgatc tgcacgaatc cggatcgtac ctgtacgaca atacgatcgg
     4021 cgacgggccg tacaacgcat ggctggatcc actcctcacg aacgagtggc agatgatcgg
     4081 ctggaacaac gtgcaggaga tgacgcgcat gggaatgccg ggcgtgttcg cgcacggaga
     4141 cttcgacacg tggtcgccgg gctacctcat gttcatcgcc gcgacgcaca atggcataag
     4201 ccggctgtac gagaccttcg gaaacggcgg gactgccgaa acactggagc gcacgctacc
     4261 ccccagcgaa acgtcacgca cctggttcag acagaatccg ccgcttccgc gcgtgatgtg
     4321 gtcgctccgc gacaacaaca actatgaaga gacgggcctg ctcgtgtcgt tgagctactt
     4381 tgcgaataat cgccatcagc tgctcgagaa tttctatcag aagagcaagc gctcgattct
     4441 caaggcgcat accgaaggcc ccgctgccta catcctttcc tcagccgatc ctcgaccggg
     4501 tgcacaggct gagctactga gaatacttca gctgcaacgt gtcgagatct cacgcgcatc
     4561 ggcgccgttc acggtgaagg tgccggttca caatgcgcat gcgaaacgca gtggtggtgc
     4621 ggacagcgca gcaaccggcg cagcaaccgg cgcagcaacc ggcgcagcaa ccggcgcgac
     4681 accaacggaa acgcgtcagt ttcccgccgg aagctatatc gtgcgaatgg accaaccgta
     4741 ttcacggatc gcggatgcgt tgctggatta ccagttctgg agcccgaacg atccgcagaa
     4801 gactccgtac gatgatacag gctggacctt ccccgagaat ttcgacgtgc aggcggttcg
     4861 ggtcgtcgat ccgcaggtgc tcacggttcc gatggagcgt gtaacgggca cgatacaggc
     4921 gcctggcggt gtttccggta cggggacagt gttcgcaatc aacaacaacg gcgacaatgc
     4981 actcactacg ctgcgttatc gcctgcgcgg cgctgacttc caggccgcag aggagccgtt
     5041 tcaggctgcg ggccggtcgt tcaaccgcgg gtcgtatgtg gtacggaacg tagcgccgag
     5101 cgaacttgac aaggctgcgc gcgagcttgg tgtctccgtg tatgcgattg cgtccgcccc
     5161 ctccgtcgcg atgcatcccg cgcgcgcggc gcgcgttgcg atcctgcata catggtccag
     5221 cacgcagacc gaaggatggt ggcgtcaggc attcgacgcc gcgcacgtcc cctacagcta
     5281 catcaacgtg caggacgtcg caaaggaccc gaatctgaac gcgaagtacg acgtgattct
     5341 ctttccgccg tcgggcaacg cgcagtcgat cgtgcagggg atgccgatgt ggcgcaacgc
     5401 gatgccatgg aagacgactc ctctcacgcc gaatatcggg aagctcgatc atacggacga
     5461 catccggccc ggcctgggac tcgtgggagt tcagaacctt gaagggttcg tgacgcgcgg
     5521 cggtgttctc gttactgtat cgagcacggc ggatttcgcg atccagtacg ggctcgcgag
     5581 cggtgtgagc gcgaaccagg cgggccgcgg caagatcgtc gggagtctgc tccgcacgcg
     5641 tatagtggat gacgcgagcc cactggtgta cggcgtatcg gacagtctcg cagtttacag
     5701 cgaggatggc gagagcttca gcgtgagcag cacgcgaggc ggcggccggg gaagtcgctt
     5761 cggcggcggc gaggcagtgc gtgcgaccgg ccgcggcacc gtcgacgatc ccgacgtacc
     5821 gcagggccgt ccgcagctcg cgccgcgcaa catggcgccg cctcgcgtga cggtcgagcc
     5881 gtggcaggcc gcaccgatca cggatgaaca gctacgcaat ccgctgtcga tcataccgcc
     5941 caatcagcgc ccgcgcgtcg cgctgcgatt caccgatcag cgaaacctgc tggtttccgg
     6001 cctactcgat ggagggagcg acgtcgcgca gagaccggtc gtggtcgatg tgccgatgca
     6061 gaaggggcac gtggtgttgt tcgcgaacaa tccgatatac cgcggcgaga cgattggagc
     6121 gtatccgctt gtcttcaacg cgatcctgaa cttcgatcac ctcgacgccg gcagaaagct
     6181 cgacgcgaag tagatgggag atgtgctgaa agttcagcct cgttgacgct gaactttcag
     6241 cctcgttgag gccacccctg atccccgatc ggtcagggcg atgcgttgct ggctggacgt
     6301 tgtgggccgt tttttgccaa atccgtaggg gcaccgcatg cgatcggaca cagtcacaca
     6361 cgatctgatt gccgtgcggg gtgcacgtcg gtacggatgt gccgtcgatc tcatgcctca
     6421 cacggatgga aaatgtacgc atctgacgca tcacgtcgcc tggaatacta cgtcgcacca
     6481 gcgcacgcat cgaagcaggt atcgaagcag gtatcgaagc gcgcatgggt tgcgctcctg
     6541 atcatcgccg tcggatgcgg ggacggccag attgtcggtc ctggcacccc cggcaatggt
     6601 ggagggacag ccgtggcttc tgtcgcggta agtccggcgt ccgcgagtct cctcgtcggg
     6661 gtcgtcgaca gtacaaagct gggtacggtt gcgatcacgc ccaccgtgaa ggacgcgagc
     6721 gggaacgtac tgtcgggtca gacggtgacc tggtcgtcga gctccgatac tgtcgcgaaa
     6781 gtgagcagtg ccggagtagt caccgccgtg aaacccggca cggcgacgat caccgccgcg
     6841 accggcggcc agagcggaag cgcctccatc accgttacgc gcgctgtcgt ggatacgatc
     6901 accgtcacac cgctcaccag cacattaaag gtcggaacgt ccgaaacatt agtagttgcg
     6961 ctcctcgacg ctcagggaca tgttttgagc gggggacgac cgattgtcga attcaacaac
     7021 agcccgtcga tcatcacggc gtcgggtggc acgattactg gcgtcgcacc gggtaccggc
     7081 accatcacct acaagagcga gaataatacg gtcacgatcg caacaatcac cgtgacgcaa
     7141 tgatatgtca ctctacgtac agcttccgtc cggtattcgc gagcgcagtc gccattcggc
     7201 acgatctctg cccattgcta cgcgcatcgt caggcgtggt cggcgcgact cgaatgcacc
     7261 gcgattagcg tctccattga gtttcgtctg gcgcaacact ttagctcgga gaagcacatc
     7321 atgaagcaac tttggagagg agtcagagca atagcaatag ctggaggcgc gatcctggtg
     7381 gcaggtagtg cggcaggtgc gcaggtaacg tttaccggca acaccttcgg ttgcttctac
     7441 accagcgcga ccgcacccac cgattgctca gggctgatag caaccacggg cggtctgtcg
     7501 tacagtggct cgacattcaa cgtgaccagc aatcccgccg acggtctggt atcgatcggt
     7561 actgctccgg cgacgccgaa cataaacaat ctggggtcgt tcaagctggt cgacggagac
     7621 catgattata ccggtgagaa tttcgcgctc ttcatggatt tcactcagcc cacgggcgtc
     7681 atgggcaacc atttgtacac ggccatggtg accggaaacc tgtcgaatgc gaccagcggc
     7741 aatgtcttca tcgatttcgt gaacactccg catgacttcg cattcgccga tggaaccacg
     7801 ctcagttttt cagtcgatga tgtgtccatc aacgatcaga ccgcagcagg cactggcacc
     7861 acggtggcag tgacgggaca cggcttcacg catctgaatg ctgccacggt accggaacca
     7921 agctcgctgg cgctacttgg caccggcctg attggaatcg ttcctctctt ccgtcgccgc
     7981 cgcaaggtgt gaaggaccag cacactcaac ggtgcattga tgtgatggtg gggccagcaa
     8041 tatccattgc tggccctctt cacataccct gacatcgaga ttggcacctt gccggacgga
     8101 cgtagcattc gcacactgat cgcagccgca gttgccatgc tctgcggttg cagcaagagc
     8161 acgccatttg ccaacggcgc gcctgccacg gcattcccgt cgcatccctt cgatcacttc
     8221 atcctgatcg tcctggagaa tgaagacgcg gcgaccatag aacggattcc gtacatggac
     8281 tcgcttggac gcgccggcgc cacactgcgc gcgtacttcg cggtcgcgca tccgtcctat
     8341 ccgaactacc tcgcgcttgt tgcgggccgg acgttctcca ccgccgatcc gggtgtaaag
     8401 catgacgccg aggcgtataa ctcacgcgac tttggcgacg cacagcttct gatcgatgcg
     8461 ccaacgatcg ccgatcggct cgaagccaaa ggattgacct gggatgcatt cgccgaagac
     8521 tatcccgata cgagcgcgac accgtcgtcc tgttacttcg gccgggcgcg cggcaactat
     8581 gcacgtaaac acgtaccctt cctgagcttc accgagttcc atacgcggcc acagatgtgc
     8641 gcacacgtgc gaaatatgag atggttcaac aagg
//
LOCUS       DATIMD010000214         3524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_946556, whole genome shotgun sequence.
ACCESSION   DATIMD010000214 DATIMD010000000
VERSION     DATIMD010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3524
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_946556"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1773
                     /locus_tag="VLI40_04895"
     CDS             <1..1773
                     /locus_tag="VLI40_04895"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HSU96543.1"
                     /translation="GRHLSELSYDDDSATMDQILDQLRMTDGGHRAEHRLRHADGRYI
                     WLETTGRAIRDPVWGNVIEIVTASRDVDARKEAESALRASNEFIRALFDSSPVAIIAT
                     DLSLKVVQWNGAAERLFGWSAEEVVGKPYPLVSEAMQPEITRNRARALREGRFTDVQV
                     QRVRRDGSLVDLNLSVGVIRNAQSEPSGFVLLAADLSERAKLEAQLRHAQKMDAVGQL
                     AGGIAHDFNNLLTVVTGYAGLLLSELPKDEPIRPDIKEIMSAADRAGVLTRQLLAFSR
                     QQMLEPRVLDLNEVVEGLEQMLRRVLPADIKVAMKLDRSLGCVNADPGQLAQVLMNLI
                     VNARDAMPDGGELVIETRDVQLDGVDGSECAAAAPGDYVTLGVSDTGCGMDESIQQRI
                     FEPFFTTKEYGKGSGLGLSTAHGIITQSGGHIAVVSKPGRGTTFKVYLPRVQSEPLAS
                     VASVSSSTVTRGAETILLVEDDHAVRTTATRILERAGYKVYSAADGSEALAIHDRIGS
                     RIDLLLTDMIMPEMSGGELAARIRTREPNVAVLVMSGYTEQTSLRQSLVDSGSVFIQK
                     PFTPEGLTAKVREALNTTVMANAS"
     gene            complement(1776..2396)
                     /locus_tag="VLI40_04900"
     CDS             complement(1776..2396)
                     /locus_tag="VLI40_04900"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HSU96544.1"
                     /translation="MAERKNGTPAPGTDSRVSGEDWYGRDISGQVYERVAFIDVGLTE
                     VVNTGASFNECTFQRGKFNASIHTDAAFVNCTFIGCSFFDARFTGCKFVGSTFDRCTF
                     ELMKVSGGNWSFVGMPGADLCSASFEDVRMREADLTGARCHGSTIRDVDLSGARLHGA
                     NLSECDLRGSELSSLEPATVELKGAIITMSQAITIAMALGLDVQAE"
     gene            complement(2448..>3524)
                     /locus_tag="VLI40_04905"
     CDS             complement(2448..>3524)
                     /locus_tag="VLI40_04905"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSU96545.1"
                     /translation="ERYANQLLGLADAAIAVNRAESVRDLLDAAAMHACLITGAPVAR
                     VTLDRDAMSDLSDDDGGGWYSAEGDPPHRMSSPVEIPLPGRDDSPIGRIALDVWANRG
                     NDMAVLNQLARLVGGALENVRLYRAAQRATQARDDVLAIVSHDLRNPLHTIALSASYL
                     EEVFLPDLPEAALQQTQIMRRAVDRANRLIQDLLDVSRIEAGGFSVAAEPIAPELLLA
                     DACEAMASTASAASVQLTCCSDGADLPDVMADRERLQQVFSNLIGNAIKFTPAGGTID
                     VSACASGPFRVRFSVRDSGSGMSPENLPHVFDRFWQARHGERTGAGLGLAIAKGIVEA
                     HDGTISAQSEPGHGAEIAFELPVA"
BASE COUNT          684 a         1069 c         1095 g          676 t
ORIGIN      
        1 ggtcggcatc tgagcgagtt gagttacgat gacgattcag ccaccatgga tcagatcctc
       61 gatcagttgc gcatgacgga cgggggacat cgggccgagc atcgcctgcg tcacgccgat
      121 ggtcgctaca tatggctgga aacgaccggt cgcgccatcc gcgatccggt gtggggcaac
      181 gtgatcgaga ttgtgaccgc aagtcgcgac gtcgacgcac gcaaggaagc ggaaagtgca
      241 ttgcgcgcgt caaacgagtt cattcgcgcg ctgttcgaca gttcgccggt ggcgataatc
      301 gcgacagatc tgagcctcaa ggtggtgcag tggaacggcg ccgccgagcg actgtttggt
      361 tggtccgcgg aagaagtcgt tggcaagcca tatccgctcg tatccgaagc gatgcaaccg
      421 gagattacgc gcaatcgcgc tcgggcgctt cgcgagggac gctttaccga cgtgcaggtt
      481 caacgtgtcc gcagggacgg ttctctcgtg gatctgaacc tttccgtcgg cgtgatcaga
      541 aacgcgcagt ccgagccgag tggttttgtg ttgctcgctg ctgatctttc cgagcgtgca
      601 aagctcgagg cccagctgcg ccacgctcag aagatggacg ccgttggcca gctggctggc
      661 ggaatcgcgc acgacttcaa caacctgctc acggttgtca ccggatatgc cggcttactt
      721 ctttccgagc ttccgaagga tgagccgatc cgaccggaca tcaaggagat aatgagcgcg
      781 gccgatcgtg ctggcgtgct cacacgtcag ttgctcgcct tcagtcgcca gcagatgttg
      841 gagccgcgag tgctcgatct caatgaagtc gtggaagggc tggagcagat gctgcgccgc
      901 gttctgcccg ctgacatcaa ggtggcaatg aaactggaca gatcgcttgg atgcgtcaat
      961 gccgatcctg gtcagttggc gcaggtgctc atgaatctca tcgtcaacgc ccgcgatgcg
     1021 atgcctgacg gcggcgagct ggtaatcgag accagggatg tccagctcga tggtgtggat
     1081 ggcagcgagt gcgccgccgc cgcgcctgga gactacgtta cactgggcgt aagcgatacc
     1141 ggttgcggta tggatgagtc gattcagcaa cggatcttcg agcccttctt cacgaccaag
     1201 gagtacggca agggaagtgg actgggcctc tcgactgcgc acggtatcat cactcaatcc
     1261 ggcggccata tcgcggtggt cagcaagccg ggtcgcggca cgactttcaa agtctacctt
     1321 ccgcgcgtac agtcagagcc actggcgagc gtggccagcg tatcttcgag caccgtcaca
     1381 cgcggtgcgg agacgatcct gctggtcgaa gacgatcatg ccgtgcgcac gacggcgacg
     1441 cgtatcctgg agcgcgccgg ctacaaggta tactcggcgg ctgacggtag cgaagcgctc
     1501 gcaattcacg acaggatcgg atccaggatc gatctgctgc tgacagacat gatcatgccc
     1561 gagatgagcg gcggcgagct ggccgcgcgc ataaggacgc gagagccgaa cgtcgccgtg
     1621 ctcgtgatgt cagggtacac cgagcagaca tcgctccgcc agagtctggt ggattccggc
     1681 agcgtcttta ttcagaagcc gttcacaccg gagggcctta cagcgaaggt ccgcgaagcg
     1741 ctgaacacta cagtgatggc gaacgcttcg taggcttact ccgcctgcac gtccaggccg
     1801 agcgccattg cgatggtgat tgcctggctc attgtgatga tcgccccctt gagctcaacg
     1861 gtggcgggct cgagcgagct cagctcactt ccacgcaagt cacattcaga gagattggcg
     1921 ccgtgcaacc gcgcgcctga cagatctaca tcgcgaatgg tcgagccgtg acatcgcgct
     1981 cccgtgaggt ccgcttctcg catccgcacg tcctcgaacg acgcgctgca caggtctgcg
     2041 cccggcatgc cgacaaacga ccagttgcca ccactgacct tcatcagctc gaaggtacac
     2101 cggtcgaagg tgcttccgac gaatttgcat cccgtgaagc gagcgtcgaa gaaactgcac
     2161 ccgatgaacg tgcagttgac gaatgccgca tcggtatgaa tcgacgcgtt gaatttgccg
     2221 cgttgaaacg tgcattcatt gaacgatgcg ccggtgttga ctacctccgt caatccgaca
     2281 tcgatgaatg caacgcgctc gtagacctgg ccggagatgt cgcggccata ccagtcctcg
     2341 ccgcttaccc tgctgtcggt cccgggagcg ggtgtgccgt tttttcgttc agccatgatg
     2401 gtatgcgcgt acgctagcga ttgacgcagt tcgtcgcaat ccgtggctca cgcgacaggc
     2461 agctcgaatg cgatctcggc gccgtggccc ggctcgctct gcgccgaaat cgtaccatcg
     2521 tgcgcttcca cgattccttt cgcgatcgcg agccccagac cagcaccggt gcgctcacca
     2581 tgtctcgcct gccagaaccg gtcgaagacg tgcggcagat tttcgggact catgccggat
     2641 ccgctgtcgc gaacggagaa acgaacgcgg aacggaccgc tggcacacgc actgacgtct
     2701 atggtgccgc cggcaggcgt gaattttatc gcattgccga tgagattgct gaacacctgt
     2761 tgcagccgct cgcgatccgc catcacgtca ggcagatccg ccccgtcgct gcagcacgtc
     2821 agttgcacac tcgccgcgga cgcagtggat gccatcgcct cgcacgcgtc tgcaagcagt
     2881 agctcaggtg caatcggctc ggcggccacg gagaatccac cggcctcgat tcgtgacacg
     2941 tcgagcaggt cctggatcag tctgttggca cggtcgacag cgcggcgcat gatctgcgtc
     3001 tgttgcagtg ccgcctccgg tagatccggg aggaacactt cttccagata cgacgcgctg
     3061 agggcgatcg tgtgcagcgg attgcgcaga tcgtgcgaga cgattgcaag tacgtcgtcc
     3121 cgcgcctgcg tggcacgctg cgccgcgcga tacagccgca cgttttcgag agcacctccg
     3181 accagacgtg caagctgatt cagcactgcc atatcgttcc cgcggttcgc ccacacgtcc
     3241 agcgcgattc gaccgatagg cgagtcgtcg cgacccggaa gtgggatctc aaccggcgat
     3301 gacatcctgt gtggtggatc accttccgca gagtaccagc cgcccccgtc atcgtcggaa
     3361 agatcgctca tggcgtcgcg gtcgagtgtg acgcgtgcga ctggtgcgcc ggtgatgagg
     3421 cacgcgtgca tggcggctgc gtcgagcagg tcacgaacgc tctctgctcg attgaccgca
     3481 atcgccgcat cagccagccc gagcaactga ttcgcatagc gctc
//
LOCUS       DATIMD010000215         5913 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4411452, whole genome shotgun sequence.
ACCESSION   DATIMD010000215 DATIMD010000000
VERSION     DATIMD010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5913
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4411452"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..849)
                     /gene="msrA"
                     /locus_tag="VLI40_04910"
     CDS             complement(178..849)
                     /gene="msrA"
                     /locus_tag="VLI40_04910"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: protein motif:HMM:NF013766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HSU96546.1"
                     /translation="MLTSRFVPLAVALGVVAAIAGGSVTARASTRAPIRSAAPAAEVD
                     TATFAGGCFWSMERPFDNTAGVISTTVGYTGGTKANPTYEDVGTGTTGHLESVEVHYD
                     PSKVTYDRLLYIYWHNIDPVTADGQFCDRGNEYHTAIFYHNDAQRKAAEATKEQLDKS
                     GLFKSPVVTKIVPASTFWKAEEYHQHYADRNPIQYNLYRAGCGRDARLKELWGSSAEP
                     NVPPM"
     gene            complement(900..1469)
                     /locus_tag="VLI40_04915"
     CDS             complement(900..1469)
                     /locus_tag="VLI40_04915"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HSU96547.1"
                     /translation="MNLIFRMVRVFFMARLRSRVDPLAETLLTFTVWPTDVDVLIHMN
                     NGRYLTLMDLGRVDGVLRNGIWKALRSRRWYTVVASEAIRFRESLPLFERFELRTRTL
                     GWDDKSFYIRQQFLVRGRVVAVGIVRVRFLKRSGGTLSATEVANALMPGVASPVLPDY
                     ISTWRAAESGYARATSIESSKNHWTALGV"
     gene            complement(1491..1898)
                     /locus_tag="VLI40_04920"
     CDS             complement(1491..1898)
                     /locus_tag="VLI40_04920"
                     /inference="COORDINATES: protein motif:HMM:NF013633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein"
                     /protein_id="HSU96548.1"
                     /translation="MQSGNDESNDVVRLDKWLWAARFFKTRALAAEAIDGGKVHLNGE
                     RVKRSKGLKVGDDVRVRLGPYEHRIIVRSTSDRRGPATVAATLYEELPESRATREALV
                     EQRRMETAAGAADTGRPSKRDRRQIEHLRKRRD"
     gene            complement(1900..2721)
                     /locus_tag="VLI40_04925"
     CDS             complement(1900..2721)
                     /locus_tag="VLI40_04925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU96549.1"
                     /translation="MSDSRTRIGVTVIAVMVVMAVFAPIVARHDPNAIDLIHLLDPPS
                     HAHWLGTDVQGRDVWARLVYGARVSLAVGLVSQVIAVSLGITLGLLAGYYRGWIDEVV
                     MRLADVTLAFPTLLLLIAMSAAFQPSMSVVFITIGVVGWAGIARLVRGQVLVVRDLEY
                     VQAARALGARGERIMLLHVLPNVVGPVVIAATLGIAGAIMAEAALSFLGLGIQPPTAS
                     WGSMIADGRDLDQLRNAPWTSLAPGLAIGAAVLGFNLLGDALRDALDPRRIEGAE"
     gene            complement(2739..3674)
                     /locus_tag="VLI40_04930"
     CDS             complement(2739..3674)
                     /locus_tag="VLI40_04930"
                     /inference="COORDINATES: protein motif:HMM:NF015251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSU96550.1"
                     /translation="MADAPRPTASHRAEYYALRTVVGALHALPWDVACGFGSRLGSIG
                     YSPLGIRRHVVERQIAAAFPELSQQEVDAMARKAYAHLGRSSIETALLPSIGQKGVLD
                     MVESVDGFELVEDAISRGHGAVLVTGHLGNWELAGAYVAARGVPMDVIVRTQANPLFD
                     AYINETRATLGMTVVRDYEAARRTPRSLREGRAVAFVSDQGVMGLASTYVPFFGRPAK
                     TPRGAAVFAMKYDTPTLFVTALRQPGGRYRVSVERVPVIRTGNREADVDAIVTNYTAI
                     LERWVRTAPEQYFWHHRRWRRQPEGTPPELRDPSL"
     gene            complement(3667..4836)
                     /locus_tag="VLI40_04935"
     CDS             complement(3667..4836)
                     /locus_tag="VLI40_04935"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSU96551.1"
                     /translation="MQHLLVTKDFLPALSGAARYHAALARRYPEPMSVSTVAGRQATR
                     YDAAEDYKIERQSFGYDAADGFVSRMRWQTWLSGRCKGRVQVLHCGGIGVTGRVVRHT
                     HKRVRIPYVVYVSASELNRAREKVKSGSLARRAVRLVLGDAAGIVATTDYVAILTREL
                     MQEIGITQPPPVAAPGMGADPLLFGPGRDTGTLRQRWGIRRAPIILTVARLVPHKGQD
                     TGIEAIALLRDEFPDLRYVLVGEGSDEARLRNIAADMNVMDRVGFAGPMRDDELPEAY
                     ATSTIYLDASRAAPGATVAGNGISLIEAQATALPVVTSDAGGVRSFVREGESGIIVEP
                     ASARSMADALAALLRDAEKRSEMGMAGREAVETRMNWSRVTHDTARFVQECVANG"
     gene            complement(4842..5810)
                     /locus_tag="VLI40_04940"
     CDS             complement(4842..5810)
                     /locus_tag="VLI40_04940"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSU96552.1"
                     /translation="MRVLIIGSSNPWRMEAATERALRRAGHETLIVDDRRTKRAIGWR
                     MTQHMVRARARHFRPDFIFLSKCLALDLETVRRLVGDTRNAMWYHDPQWFRDTARPDI
                     GHIVAVARLARTFFVTGFDAEWRALGTNAKFLPAAGDAGIEPVSPDPAYASDAAFIGT
                     GYDPSRAELLVRLASHHDVRVYGPGWERWSDQLRWNGRSIEGKEFARVCSSSAAVLGI
                     NPSRAAGGTTYTSDRTWMVMLAGAFYLGQATPGVTQFLLDGKHCAWYTDADDCAARLD
                     HYLRDPVARERIRREGEQFVRKNHTYDQRITNLLSGEAWTAPPLTV"
BASE COUNT         1108 a         1952 c         1784 g         1069 t
ORIGIN      
        1 aacggtgagc gcgcagcgag cggattgatg ctgagcgaaa taagtccact cgcgggatca
       61 tacatattgc tgcggaaggg tgcgcgggat tatgcgatga tccagatcgc cggatagcac
      121 aacaaggctc gtcatccccg cgaaagcacg aaaacgggga tgacgttacg caccgtccta
      181 catcggcggc acgttcggct ccgcgctcga tccccacagc tccttgagcc gcgcatcccg
      241 tccgcaaccg gcccgataaa gattgtactg gatcggattc cgatctgcgt aatgctgatg
      301 gtattcctcg gccttccaga aagtcgaagc gggcacgatc ttcgtgacga cgggcgactt
      361 gaacaacccc gacttgtcta gctgctcctt ggtcgcttca gccgcctttc gctgagcgtc
      421 gttgtgatag aagatcgccg tgtgatactc gttgccgcgg tcgcagaact gaccgtcagc
      481 ggtcacaggg tcgatgttgt gccagtagat gtagagcaga cgatcgtacg tcaccttgga
      541 aggatcgtag tgcacctcga ccgattcgag atgccccgtg gttccggtgc cgacgtcctc
      601 gtacgtggga ttggccttgg tgccgcccgt gtatcccacc gtcgtggata tgacgcccgc
      661 cgtattgtcg aatggtcgct ccatactcca gaaacaacct ccggcaaagg tcgccgtatc
      721 gacctccgcc gctggtgcgg ctgagcggat cggcgcacgc gtcgatgccc gagccgtaac
      781 ggagccgccc gctattgcgg cgacgacgcc gagcgcgact gcaagtggaa cgaaccgcga
      841 tgttagcata ttgtaagccg gcctgttggt gatgcgtaag tggaactatg ccacatctct
      901 tatacgccga gcgccgtcca atggttcttc gacgattcga tgctcgtcgc gcgggcataa
      961 ccagactcgg cggcacgcca ggtggatatg tagtccggaa gtactgggga cgctacgcca
     1021 ggcatgaggg cattcgcgac ttcggtcgcg gataacgtcc caccggaacg cttcagaaat
     1081 ctcacccgaa cgattccgac cgcgacgacg cgaccgcgca cgaggaattg ctgccgtatg
     1141 tagaacgatt tatcgtccca tcccagagtt ctggtgcgaa gctcgaagcg ttcgaacaac
     1201 ggcagagact ccctgaaccg gatcgcctcg gaggctacca ctgtgtacca gcgccggctc
     1261 ctgagcgcct tccagattcc gttgcgaaga acgccatcca cgcgaccgag atccatcaac
     1321 gtgagatagc ggccgttgtt catgtggatg agtacgtcga cgtcggtggg ccacaccgta
     1381 aatgtcagca acgtctccgc aagcgggtcc acccgcgagc gcaggcgcgc catgaagaat
     1441 acgcggacca ttctgaagat gagattcatc gtgcggatct cctcacaggt tcagtctctc
     1501 cgcttccgga ggtgctcgat ctgccgcctg tcccgcttgc ttggcctgcc agtatcggct
     1561 gcgccagcag cagtctccat acggcgttgc tcgacgagcg cctcgcgcgt tgcgcggctc
     1621 tccggcaatt cctcgtacaa cgttgccgca actgttgcag gtccgcgacg atcggacgtg
     1681 gatctgacaa ttatccgatg ctcatacgga ccgagtctta cacgtacgtc gtcgccgacc
     1741 ttcaatcctt tcgagcgctt gactcgctcg ccgttgagat ggaccttgcc gccgtcgatc
     1801 gcttcggccg cgagcgcgcg cgtcttgaag aaacgcgctg cccacaacca cttgtccagc
     1861 cgcaccacgt cgttcgattc gtcgttgcct gattgcacgc tattcagctc cttcgatgcg
     1921 tcgcggatcg agcgcgtcgc gcaaggcgtc gcccagcaaa ttgaatccga gaaccgcggc
     1981 gccgatcgcc agacctggcg cgagcgacgt ccacggcgcg ttccgaagtt ggtccagatc
     2041 gcggccgtcc gcaatcatgc ttccccagct tgcggttggc ggttgaattc caagccccag
     2101 gaatgagagc gccgcctcgg ccattatcgc gcccgcgatg ccgagggttg cggcaatcac
     2161 caccggtccc acgacgttcg gaagaacgtg cagcagcatg atgcgctctc cgcgcgcacc
     2221 gagcgcacgc gcggcctgca catactcgag atcgcgcacg acaagaacct gcccgcgcac
     2281 cagtcgcgcg atgccggccc agccaaccac accaatcgtg atgaacacca cactcatcga
     2341 tggctggaac gcagccgaca tcgcaatcag caacaacagc gtcgggaagg ccagggtcac
     2401 gtcggcaagc cgcatcacga cctcgtcgat ccagccgcgg taataaccgg cgagcagtcc
     2461 cagcgttatg ccaagactga ccgcgatcac ctgcgaaacg agtcccactg cgagcgacac
     2521 gcgtgcaccg tacacgagcc gcgcccacac gtcgcgtccc tgcacatctg tgccgagcca
     2581 gtgggcgtgt gacggcggat cgagaagatg gatcagatct atggcattgg gatcatgccg
     2641 cgccacaatg ggtgcaaaaa ccgccattac caccattact gcaatgacgg taacaccgat
     2701 ccgtgtccga ctgtcggaca tgagccggct cccggtgctc acaggctcgg gtcccgaagc
     2761 tcgggaggcg ttccctctgg ctgccggcgc cagcgtcggt ggtgccagaa atactgctcg
     2821 ggcgccgtac gaacccagcg ctcgagtatc gccgtgtagt tcgtgactat cgcatcgacg
     2881 tccgcctcgc ggttgccagt gcgaatgacc ggaacgcgct cgacgctcac acgatagcgt
     2941 ccgcctggtt gccgaagtgc cgtcacgaac agggtcggcg tgtcgtactt catcgcgaat
     3001 acggccgcac cgcggggcgt ctttgcaggt ctgccaaaga acggcacgta tgtcgacgcg
     3061 aggcccatca cgccctgatc ggaaacgaac gcgacggccc ttccttcccg cagcgatcgc
     3121 ggcgttctgc gtgctgcctc gtagtcacgc accacggtca tgcccaacgt cgcgcgcgtc
     3181 tcgttgatgt acgcatcgaa gagcggattg gcctgtgtgc gcactatgac atccatcgga
     3241 acgccgcgcg ctgcgacgta cgctcccgcc aactcccagt tgcccagatg ccccgttacg
     3301 agcaccgcgc cgtgcccgcg cgagattgcg tcctccacca gctcgaaccc atcgaccgac
     3361 tcgaccatgt cgagcacacc cttctggccg atcgacggca gcagcgcggt ctcgatggac
     3421 gagcgcccga gatgtgcgta ggcctttcgc gccatggcgt ccacttcctg ttgcgacagc
     3481 tccgggaacg cagccgcgat ctggcgctcg acgacgtgtc tgcgtattcc gagcggactg
     3541 taaccgatgc tgccgagcct ggagccgaag ccgcacgcga cgtcccatgg aagtgcgtgc
     3601 agcgcaccga cgacggtgcg gagagcgtaa tactcggcgc gatgcgacgc ggtcggccgt
     3661 ggcgcgtcag ccattcgcaa cgcactcctg gacgaatcgt gctgtatcgt gtgtcacgcg
     3721 actccagttc atgcgggtct ccacggcctc ccggcctgcc atgcccatct cgctgcgctt
     3781 ctccgcgtcg cgcagcaacg cggcgagcgc gtcagccatg gatcgcgcgc ttgccggctc
     3841 gacgatgatc ccgctttcgc cctcgcgaac gaaggagcgc acgccgcccg cgtcgctggt
     3901 gaccaccggt agagcggtag cctgagcttc gatcaatgaa ataccatttc cagcaacggt
     3961 cgcaccgggg gccgcacgtg acgcgtcaag gtaaatcgtc gacgtcgcgt acgcttccgg
     4021 tagttcgtcg tcgcgcatcg ggcccgcgaa tccaacccgg tccatgacgt tcatgtctgc
     4081 cgcgatgttc ctgagtcggg cttcgtcgct accttcaccg accagaacat agcgcaggtc
     4141 gggaaactcg tcgcgcagca gcgcgatcgc ctcgatgccg gtgtcctgcc ccttgtgtgg
     4201 aacgagtcgc gccaccgtaa gtatgatcgg cgcgcgccga atcccccagc gctgcctgag
     4261 cgtgccggta tcgcgtccgg gcccgaacaa cagcgggtcg gcgcccatgc cgggcgcagc
     4321 caccgggggc ggttgcgtga ttccgatctc ctgcatgagc tcacgtgtga gaatcgcgac
     4381 atagtcggtc gttgcgacaa tgccggccgc gtcgccgagt accagccgta cggcgcgccg
     4441 agccaacgag ccggatttca ccttctcgcg tgcacgattc aattcactgg cgcttacgta
     4501 cacgacgtag ggaatacgca cgcgcttgtg agtgtgccgc acgacccgtc ccgtgacgcc
     4561 gataccaccg cagtgaagga cctgaacgcg gcccttgcag cgccctgaaa gccaggtctg
     4621 ccaccgcatg cggctcacga agccgtcggc ggcgtcatat ccgaatgatt gacgctcgat
     4681 cttgtagtct tccgcggcgt cgtagcgcgt cgcctgccgg cccgcgaccg tcgagaccga
     4741 catcggctcg ggataccggc gcgccaacgc ggcatgatac cgcgccgcgc cgctcagcgc
     4801 gggaagaaag tcctttgtaa cgagaagatg ttgcaagagt gctatacagt tagcggcgga
     4861 gcggtccacg cttcgcccga cagaagattc gtgatgcgct gatcgtacgt gtggtttttt
     4921 cgaacgaact gctcgccttc gcgccggatc cgctcccgcg ccaccggatc gcggaggtag
     4981 tgatcgagcc tggctgcaca gtcatccgcg tcggtgtacc acgcgcagtg cttgccatcg
     5041 agcaggaatt gcgtgacgcc cggagtggcc tggccgaggt agaatgcgcc cgcgagcata
     5101 accatccacg tgcggtcgga cgtgtacgtg gtgccgccgg cagcgcgtga cgggtttatt
     5161 ccaagcacgg ctgccgagct ggagcataca cgcgcgaact ccttcccttc gatcgagcgg
     5221 ccgttccacc ggagctggtc gctccagcgc tcccatcccg ggccatagac gcgcacgtcg
     5281 tgatggcttg caagccgaac caacagctcc gctcgcgagg ggtcgtaccc agttccgatg
     5341 aatgctgcgt ccgatgcata cgcggggtct ggcgaaacgg gttcgatgcc cgcgtcgccc
     5401 gccgccggga gaaactttgc attggttccg agcgcacgcc attccgcatc gaagccggta
     5461 acgaagaagg tgcgggccag tcgcgccacc gcgacgatgt ggccgatgtc cggtcgcgcc
     5521 gtgtcacgaa accactgcgg gtcgtggtac cacatcgcat tccgcgtatc gcccacaagg
     5581 cggcgcaccg tctccagatc cagcgcgaga cacttggaca gaaatatgaa atcgggtctg
     5641 aagtgtcgcg cgcgcgcacg aaccatgtgc tgagtcatgc gccatccgat cgcgcgcttc
     5701 gttcgccggt cgtccacaat gagtgtctcg tgtcctgctc ggcgcagtgc acgctccgtc
     5761 gcggcctcca tgcgccacgg gttggagctg ccgatgatca ggactcgcat cgcatggccc
     5821 atagacggac atacttggcg cacacactcg cggcggcaag cgatgcgagc accgcgccgc
     5881 gcgcgccgtc gagaaatccc atgcgaaaga tgt
//
LOCUS       DATIMD010000216         5545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2389519, whole genome shotgun sequence.
ACCESSION   DATIMD010000216 DATIMD010000000
VERSION     DATIMD010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5545
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2389519"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1893)
                     /locus_tag="VLI40_04945"
     CDS             complement(<1..1893)
                     /locus_tag="VLI40_04945"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSU96553.1"
                     /translation="MSAQSVRGTARIEGGGQGSAQTTIALVDSLGAIVAGTTTGEAGE
                     YLLRAPHAGTYRVRARRIGFAPDSSSAMVMTSGATVTFDPSMKQLRTQLAEVRVQEAR
                     RCVLAPEAGAQALRLWQEAQNALSGAAVNTVSGTNSFVLNRFQRELDSKGKRVIRSTR
                     WQLPAQASETYASISADSLATDGYERITGSDAIYYAPDARTLVSESFAQTHCLRPVAG
                     VAGSDSVGLAFEPVGRDHRTEVAGTLWLARSTGKLKYLEFQYVDPTARGGESDPRAPH
                     ATGRVDYRELPNGAWIISSWMIRAPLIRVTAPRTIVGALGSFRTDAVRTVTGWWEFGG
                     DVADVTTAKSDNRLRSFARNSGSLRGTLVDSIVHKGVMGVEVSVHAVNAQGVVARSIT
                     DSSGNFGIDSLRAGDYLLAFSAPRLDTLGVHIPITSFAIVPEQELTLVTTMPPSDIER
                     ACRSQQPDQRAVHGVVRDGTSGTPLSAVSVRMTWVPRASLRVIGFVAQLSDASTVTDS
                     TGRYVLCGLPVDRALTATMTEAGGSPTKIVIPANADAVILRNVELSAGESNTGSVSGM
                     ARARDGSGIAAAEVSLLDDPDKRVYTDSVGAFKLSDVPPGFHLLRIRRLGFVPVLVQM
                     RIAPHGV"
     gene            complement(1986..3275)
                     /gene="hflX"
                     /locus_tag="VLI40_04950"
     CDS             complement(1986..3275)
                     /gene="hflX"
                     /locus_tag="VLI40_04950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HSU96554.1"
                     /translation="MPKELIDLIAPTERALLIGAPRKGRSAKHRTAEHLEELARLADT
                     AGAEVVGEVVQQIERPNPATYLGKGKVEELKQTIADVDATLLLFDDELSPSQGKNIED
                     ITGKRVMDRAELILDIFATRARSAEAKMQVELAQLQYMLPRLTRMWAHLEKFRGGIGV
                     RGPGETQLETDRRLINHRIKVLTQRLAEVQKSREVQRGSRRGEFQASLVGYTNAGKSS
                     ILRALASDNSIFVENRLFATLDPLTREVELADGEDILLTDTVGFVRKLPHQLVASFRA
                     TLEEVLEADVLLHVIDVSDPLWEEHRAVVVEVLAELGANHKPLINVFNKSDLLPPEVL
                     EAVRERIGNLIPDAVFVSAETEGGLEALKRALLRRLRADRRVVELRVPLSDGRLLAEL
                     HRSGDVLAQRTDGDEMIVSVRLTPEALGRLGARAVAV"
     gene            complement(3279..3743)
                     /locus_tag="VLI40_04955"
     CDS             complement(3279..3743)
                     /locus_tag="VLI40_04955"
                     /inference="COORDINATES: protein motif:HMM:NF015147.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LEA type 2 family protein"
                     /protein_id="HSU96555.1"
                     /translation="MNKTFVISAVAALAGCASLGVGGFKQPVVNFNDLQVEGVGTKGG
                     TVDVVLSVYNPNGYRLDATQLTYKLLVDTSSVGDGVYNTKFTVQSGDSAIVRLPVHLS
                     YAGLAAAAKQLQENGSVNYRVIGDVTVATPVGNFTKPYDQTGRFSTLSGIKH"
     gene            3834..4958
                     /gene="wecB"
                     /locus_tag="VLI40_04960"
     CDS             3834..4958
                     /gene="wecB"
                     /locus_tag="VLI40_04960"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HSU96556.1"
                     /translation="MKVLVVAGARPNFMKVAPILRALEVAHHESILVHTGQHYDAAMS
                     DTFFKELGIKTPDFHLGVGTASHAVQTARIMEAFEPVLMKVHPQWVVVVGDVNSTMAA
                     TLVASKIRTETHAHIAHVEAGLRSRDWRMPEEINRVVTDRLADLLLTPSEDAAANLIA
                     EGIPQDSIRFVGNVMIDTLMLQLPVARATNTLERLGLRRRHYVAATLHRPSNVDDPAA
                     LAAVLEGLALVAESLPVVLPLHPRTLKNIERFHLGPKLTPLTVLEPLGYTQMLALTDG
                     AQCVLTDSGGIQEETTALGVPCVTLREQTERPVTITHGTNHMAPWPLTPRGILGAYAD
                     SVAAVAQATPPRPAGWDGHAAERIVKALEEKRPTKHYSPS"
     gene            complement(4943..>5545)
                     /locus_tag="VLI40_04965"
     CDS             complement(4943..>5545)
                     /locus_tag="VLI40_04965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination factor protein RarA"
                     /protein_id="HSU96557.1"
                     /translation="ALHDKSGEAHFNLLSALHKSLRGSDPDAALYWAARMIEGGEDPM
                     TIFRRSIAMAAEDIGVADPQALQLAVAARAAYHVLGPPEGYLPLAEMLVYLATAPKSN
                     SAYRALGAAMDAARETPGEGPPMNIRNAPTKLMKELGYHAGYKYAHDSEDAYIPQEYL
                     PEKLRGSVFYQPGPFGFERDIAKRLAWWDELKKKKAQEGE"
BASE COUNT         1091 a         1796 c         1602 g         1056 t
ORIGIN      
        1 cacgccgtgc ggtgcaattc gcatctgaac cagcaccggg acgaatccca atcggcgaat
       61 ccggagcagg tggaatccgg gaggcacgtc ggaaagtttg aaagctccta cggagtccgt
      121 gtaaacgcgc ttgtccggat cgtccagcaa cgacacctcg gcagcagcta ttccggaccc
      181 atcgcgagcc cgcgccattc cggaaacaga cccagtatta ctttcgcccg ccgaaagctc
      241 cacgttcctg aggatcaccg cgtccgcgtt agctgggata acgatcttcg tcggactgcc
      301 accagcttcg gtcatcgtcg ccgtcagcgc ccggtcgaca ggtaatccgc acagtacata
      361 acgaccagta ctatcggtga ctgtggatgc atcggacaac tgcgccacga atccaattac
      421 gcgcagcgat gcgcgcggaa cccatgtcat acgaaccgac acggccgaga gaggcgtccc
      481 gctggtacca tcgcgaacga caccgtgaac ggcgcgctga tccggttgct gcgaacgaca
      541 tgcacgctcg atgtcggacg gcggcattgt cgtgaccaac gtgagctcct gctccggaac
      601 gatcgcgaag gaagtaatcg gtatgtgaac gccgagcgtg tcgaggcgcg gcgctgagaa
      661 ggcgaggagg taatcgcctg cgcgcaggct gtcgataccg aaattaccgg atgagtctgt
      721 gatactccgc gccacaaccc cctgcgcgtt aactgcatga acgctcactt ccacgcccat
      781 cacgcccttg tgtacaatgc tatcgacaag agtaccgcgg agcgacccgg aattccgagc
      841 aaacgatcgg agccgattgt cggacttcgc ggtcgtgaca tcggcaacgt ctccgccaaa
      901 ctcccaccaa ccggttaccg ttcgcaccgc gtcggtccga aacgatccta gcgccccaac
      961 gatagtgcgc ggcgcagtaa cacgtatcaa cggggctcgg atcatccagc tgctgatgat
     1021 ccaggctccg ttcgggagct cccgataatc cacgcggccg gtcgcatgtg gcgctcgtgg
     1081 atccgactcg ccaccgcgcg ccgtcggatc gacgtactga aattccaggt acttcaactt
     1141 gcccgtcgag cgtgcaagcc ataacgtccc cgcgacctcc gtgcgatgat cccgcccgac
     1201 gggttcgaat gcgaggccca ccgaatccga tccagcaaca cctgcaacag ggcgcaagca
     1261 gtgagtctgt gcaaacgact cggacaccag cgtgcgcgcg tccggagcgt aatagatggc
     1321 atcgctcccg gttatccgct catatccgtc cgttgcgagc gaatcagcgg aaatgcttgc
     1381 gtacgtttca gacgcctgtg cgggtaattg ccaacgcgtc gatctgatca cgcgcttccc
     1441 cttactgtca agctcgcgtt gaaatcggtt gagcacaaac gaattggtcc cactcaccgt
     1501 gttcactgct gcaccggata gtgcattctg cgcttcctgc cagagccgga gcgcctgagc
     1561 accagcctcc ggcgcaagaa cacatcttcg cgcttcctgt acccggacct cggcgagttg
     1621 agtccgcagc tgcttcatcg aaggatcgaa cgtgaccgtc gcgccactcg tcatcaccat
     1681 cgcggaagac gaatccggtg cgaatccaat ccgccgcgcg cgcacgcgat acgtcccggc
     1741 atgtggcgca cgcagcagat attctcccgc ttcgccagta gttgtgcccg cgacgatggc
     1801 gccgagtgaa tcgacaaggg caatcgtggt ctgcgcagat ccctgcccgc caccttcgat
     1861 gcgtgcggtt ccgcgtactg actgcgcaga caacgatgat gcgccggcac acactgcggc
     1921 acacacgccg gcaagagcgc atacagtcgc acggattacg tcaggcgtat ccgtgcgacc
     1981 gtccgttaca ccgcgacggc gcgagcgccg agtcggccca gagcttcggg tgtgagcctg
     2041 accgagacga tcatctcgtc tccgtcagtt ctctgcgcca gcacatcgcc gctacggtgc
     2101 aactccgcga gcaggcggcc atccgatagc ggcactctca attccacgac gcgccggtcc
     2161 gcgcgcaggc gtcgcagcag cgcacgcttg agtgcttcga ggccgccctc ggtttctgca
     2221 ctgacgaaaa ccgcgtcggg aatgagattg ccgatgcgct cgcgcacagc ttcgagcacc
     2281 tccggcggga gcaggtcgga tttgttgaag acgtttatga ggggcttgtg attcgcgcca
     2341 agctcggcca gcacttccac aaccacggca cgatgctctt cccataatgg atcagagacg
     2401 tcgattacgt gcaacagtac atctgcctcg agcacttctt cgagcgtagc gcgaaagctc
     2461 gcgacgagct ggtgcggtaa cttgcgcaca aagcccaccg tatcggtaag caatatgtcc
     2521 tcgccgtcgg caagctcgac ctcacgcgta agtggatcga gcgtcgcgaa caaccggttc
     2581 tcgacgaaga tgctgttgtc gctcgcgagc gcgcgcagaa tcgaggactt gccggcgttg
     2641 gtgtaaccca cgaggctcgc ctggaactca ccgcggcgcg agccgcgttg cacctcgcgc
     2701 gacttctgaa cttcggcgag ccgctgcgtc aataccttga tgcgatggtt gatgagccga
     2761 cggtctgtct cgagctgtgt ctcgccgggg ccgcggacac cgataccacc gcggaatttc
     2821 tcgaggtggg cccacatgcg cgtgagtcgc ggcaacatgt actgaagctg cgcgagttcc
     2881 acctgcatct tcgcctcggc gctacgcgcg cgcgttgcga agatgtcgag tatcaactcg
     2941 gcgcgatcca tcacacgctt gcccgtaatg tcctcgatat tctttccctg cgagggactc
     3001 agctcgtcgt cgaacaggag aagcgtcgcg tcgacgtccg caatcgtctg cttcagctct
     3061 tcgacctttc cctttcccag gtatgtagcg ggattggggc gctcgatctg ctgcacgact
     3121 tcacccacaa cctccgcgcc cgcggtatcc gccagccgcg ccagctcttc gagatgctcc
     3181 gccgtgcggt gcttggcgct gcgacccttg cgtggcgctc caatgaggag cgcacgctcg
     3241 gtcggcgcta tcagatcaat gagttctttt ggcaatctct agtgtttgat ccccgacagg
     3301 gttgagaaac gaccggtctg gtcgtacggc ttcgtgaagt taccgactgg agttgcaaca
     3361 gtaacatcgc cgatcacgcg gtagttgacc gatccatttt cctgcaactg tttcgccgcc
     3421 gcagccaggc cggcgtagct gagatggacc ggcagacgaa cgatggccga atcaccactc
     3481 tggaccgtga atttggtgtt gtaaacgccg tcccccaccg agctcgtatc gaccagcagc
     3541 ttgtaggtca gctgggtggc gtccagcctg tagccgtttg gattgtacac gctgagcacc
     3601 acgtcaaccg ttccgccctt cgtgccgaca ccttcaacct gaaggtcgtt gaagttgacg
     3661 acgggctgct tgaacccacc gaccccgagc gacgcacatc cggcgagcgc cgctaccgcc
     3721 gatatcacaa atgttttgtt catggtccga ttgtctcctg cacggaaagt gccgccggtt
     3781 ggacattgcc tgctggatgt ctagctttac ccctcataat gccaactgat cacatgaaag
     3841 ttctcgtagt tgcgggcgcc cgccccaact tcatgaaggt tgcccctatc ctgcgcgctc
     3901 tggaagtggc ccatcatgag tcaatcctgg tccatacggg ccagcattac gacgccgcga
     3961 tgtcggacac tttcttcaag gaactgggca taaaaacccc cgatttccac ctgggggtag
     4021 gcacagccag tcatgcggta cagaccgccc ggatcatgga agcgttcgag ccggttctga
     4081 tgaaggtaca cccgcaatgg gttgtcgtcg tcggcgatgt caactcgacg atggcggcga
     4141 cgctagtcgc atccaagata cgcaccgaga cgcacgcgca catcgcacac gtcgaggccg
     4201 gcctgcgtag ccgcgactgg cgcatgcccg aggaaatcaa tcgcgtagtg acggaccgcc
     4261 ttgccgacct gctgctcact ccgtccgaag acgcggcggc aaatctcatc gccgaaggaa
     4321 taccgcagga ctccatccgc ttcgtcggca acgtcatgat cgacacgctg atgttgcaac
     4381 ttcctgttgc gcgcgcgaca aacacgctgg aacggctcgg actccgtcgc cggcattatg
     4441 tcgcagcgac gctgcaccgc ccgtccaatg tggatgatcc ggcggcgctc gcagctgtac
     4501 tcgaaggtct cgcgctcgtt gcagaatcgc tgccggtagt cctgccgctg cacccgcgca
     4561 cgctcaagaa catcgagcga ttccatctcg gtccgaagct cacgccgctc acggttctgg
     4621 agccgctcgg ctacacgcag atgctggcgc tgaccgacgg cgcgcaatgc gtgctcacgg
     4681 attcaggcgg cattcaggaa gagacgactg cactcggagt tccgtgcgtc accctgcgcg
     4741 agcagaccga gcgaccagtc acgattacgc atggcaccaa ccacatggca ccgtggccgc
     4801 tcacgccccg cggaatactg ggtgcatacg ccgactcggt tgcggcggtc gcacaggcaa
     4861 cgccgccacg tccagccggt tgggacggcc atgccgcaga aagaatagtg aaagcgctgg
     4921 aagagaagcg gccgaccaag cactactctc cctcctgagc cttcttcttc ttcagctcat
     4981 cccaccaggc gaggcgcttg gcgatatccc gctcgaatcc aaaagggccg ggctgataga
     5041 aaacggatcc gcgtaatttc tctggcaggt attcctgcgg gatgtacgca tcctcactgt
     5101 cgtgcgcgta cttgtagcct gcgtggtagc caagctcctt catgagcttg gtaggagcgt
     5161 tgcggatgtt catcggcggt ccctcgcctg gcgtttcgcg agcagcatcc atcgctgcgc
     5221 cgagtgcgcg gtaggcggaa tttgatttgg gcgccgtcgc gagatagacc agcatctcgg
     5281 cgagcggcag atacccttcc ggtggcccca ggacgtgata tgcggcgcgc gcagccaccg
     5341 cgagttgcag agcctgcgga tcagcgacgc cgatgtcttc tgcggccatt gcgattgagc
     5401 gccggaaaat cgtcatcggg tcttcaccac cctcgatcat tctggcggcc cagtacagcg
     5461 ccgcgtccgg atcgctcccg cgaagactct tgtgaagcgc tgacagcaga ttgaagtgcg
     5521 cctctccgct cttgtcatgc agcgc
//
LOCUS       DATIMD010000217         4963 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1238422, whole genome shotgun sequence.
ACCESSION   DATIMD010000217 DATIMD010000000
VERSION     DATIMD010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4963
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1238422"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..1028)
                     /locus_tag="VLI40_04970"
     CDS             complement(138..1028)
                     /locus_tag="VLI40_04970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96558.1"
                     /translation="MSLRATTVLLIAISIAGPAAARAQVTATGSQRGSLPSRCVSIVG
                     PLTPVSDSVKSAARTIAGRAQAASIVGDNAAATALYQQAADINPTDPAIAYALGREYE
                     ATHDQRAMREYCRFLAISPGAAEAGDVRQRIAELALALPPDTTVVRIPVAAPVAASAH
                     MPAPAGVFLGGLLIPGLGQMTTHRPFAGVLVLAASGGALAYGLQSKNKTTLVTHTAVD
                     LLGHSYTYQTADTHSERPNAAVGIGAAAGIAVIAAIEAASHAHSVRSAATAQETTRAI
                     SAAPLVAFGPRSVGFGLSIR"
     gene            complement(1043..3514)
                     /locus_tag="VLI40_04975"
     CDS             complement(1043..3514)
                     /locus_tag="VLI40_04975"
                     /inference="COORDINATES: protein motif:HMM:NF014427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HSU96559.1"
                     /translation="MRIRRESLASRVHRCWRGFRALTAVAAILACGGSTDSVSPGGGG
                     GNGSGVQIAITPSAPSITIGAQITLQAAVRGANGQVISGATIFWSSADTNVVTVSQAG
                     VVTGKAIGTTQVAASSNGASTVTTVTVVQVPVASVAVLPSAATLVIGGTVTLQAVAYD
                     ADANALSGRSVVWASSASPVATVDGSGKVTAVSAGTATISGTIEGKTASSAITVTVIP
                     VAAVAVTPGSADIDVGASRSFDAVATDANGNTLPGRPITWASANKAIASVSASGLVTG
                     VGAGATSITATAEGKTGTAQVVVTATTPPPPIPVASVAVNPQTASLNIGGSVTLSATA
                     RDANGAALSGRTITWSTSASAIATVSNTGVVNAIAPGSATITATSEGKSGSATITVLP
                     AAPPSVASVTITPSGATVHIGSTATFVATARDASGNALTGRLITWISNTPGVATVSST
                     GVVTGVTAGTTAITAMCEGQNTAVVVTVIPVPVASVTVSAASSSIQVGATTTVTAVMK
                     DSSGTALQGRSVTWSSSNQSVATVDATSGVVTGVAPGTVTITGMSEGKTGTTTITVAP
                     TPVATVTISPPNPSVVEHQTTALTAVTKDANGNTLSGRTVTWSVTPTSVATINANTGV
                     VTGVSAGTATVTATSETKSGTATLTVTPAPVATVTVAAPSGPIVVGQTVTLTDTVKDA
                     AGNILTGRVVTWSSSNPSKATVNSSTGLVTGVDSGSTTITATSETKTGTATVVVHLVP
                     VDSVIVTAAATTIAVGHTTTVTAVAKDANGATLSGRAVSWSSNNTAVATVTSNGTVTG
                     VAHGTANIIATIDGTSGSATITITP"
     gene            complement(3522..>4963)
                     /locus_tag="VLI40_04980"
     CDS             complement(3522..>4963)
                     /locus_tag="VLI40_04980"
                     /inference="COORDINATES: protein motif:HMM:NF012632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96560.1"
                     /translation="RAPVAAVPAVPHSPVSNYGVLDSAGAGIVPAIGAAQPATNQSTD
                     PSATGVDSGATDANAVAATGDPGATSGTTTGNKSGEKSGANAPAPPHTAQKSATSASI
                     AAESAQADIPATMPAPTAPAPLMVVASGRSTIAAGGAHTCLIALAGNTYCWGANSAGQ
                     LGTGTSQGASTTPTAVSGGVHFSSIAAGLSHTCALSRGTAYCWGNNDHGQLGDGTHAS
                     HDTPMRVALARSLISVVSGSGFSCGLASDGTAYCWGAGTRGQIGDGAANERITPVRVS
                     SSVSFAMLAAGWNHVCGLTGSGRAYCWGANDSGQLGDGTITDRSTPTAVRSDVRFATL
                     SAGSAHTCGTTSSGAAYCWGDNQYGQLGDGTHGTHFTPTEVSGTARFVALSAGSVHTC
                     GLTRNGDAWCWGRNTYGQLGDGSTITRTIPVPVSGGHEFTTVNSFGSHTCGTTASGDL
                     FCWGYNLDGQLGDGTREHRLRPTYIEKPA"
BASE COUNT          843 a         1577 c         1586 g          957 t
ORIGIN      
        1 ctgtggctgc aggaattctc atccatggcc agggataggg acgggctccc tatacgcaca
       61 actcgcgccc atatcgctgg aacttgcggt gcggatccgt ccgcaccgcc gggccgacta
      121 ggggatgcta ggggatgcta gcggatactc aggccgaagc cgaccgaacg cggcccaaag
      181 gccaccagcg gcgcagcgga tatggccctt gtcgtttcct gtgcggttgc cgcactgcgg
      241 accgagtgcg catggctggc ggcctcgatt gcggcgatga cagcgatacc agcggccgct
      301 ccgatgccga ccgcggcgtt ggggcgctcg ctgtgcgtgt ccgccgtttg atacgtgtag
      361 ctgtggccga gtagatcgac ggcagtgtga gtaacgagcg tcgtcttgtt cttggactgc
      421 agtccgtacg caagcgcgcc gccggacgcg gccagcacga gcacccccgc aaatggccgg
      481 tgcgtcgtca tctgtcccag gccgggaatg agcagaccgc ccaggaacac ccccgccggt
      541 gcgggcatgt gtgcggatgc cgcgacaggc gctgcgacgg gtattctgac tacggttgtg
      601 tcgggtggaa gtgcgagcgc gagttccgcg atgcgctggc gcacatcgcc ggcttcggcc
      661 gcgccggggc tgatcgcgag aaagcggcaa tactcgcgca tggcgcgctg gtcgtgcgtt
      721 gcctcgtatt cgcgaccgag cgcgtacgcg atcgctggat cggtcgggtt gatgtccgct
      781 gcctgctggt agagcgcagt ggccgctgcg ttgtcaccga cgatcgacgc agcctgggca
      841 cgtccggcga tcgtccgcgc cgctgacttc acgctgtcgg ataccggagt gagcggcccc
      901 acgatactga cgcagcggct cggaagcgag cctcgctgcg atccggtcgc tgtgacctgt
      961 gcacgagcgg cggcagggcc agctatggaa atcgcgatca acagcacggt cgttgcgcgc
     1021 agtgacatat gtgacacgtt agtcagggtg ttatggtaat ggtagccgaa ccggacgttc
     1081 cgtctattgt cgcgatgatg ttggcggttc catgcgcgac ccccgtcacg gtaccattcg
     1141 acgtaacggt cgcgaccgct gtattattcg agctccagct caccgctcgt cccgagagtg
     1201 tggcgccgtt agcatccttc gcgaccgctg ttacggttgt tgtgtggccc accgcaattg
     1261 ttgtcgctgc ggccgtgaca attacggaat cgacgggcac gagatgtacg acgacggtag
     1321 ctgtgcccgt ctttgtttcg ctcgttgcgg taatggtcgt gctaccggaa tcgactccgg
     1381 taacaagacc cgtactcgaa ttgacagtcg cttttgacgg attgctcgac gaccaggtga
     1441 cgacgcgtcc ggtcaatatg ttgccggcgg cgtccttgac cgtatccgtg agcgtcacgg
     1501 tctgaccgac gacaatcggc ccactcggcg ctgcaaccgt aacggtggcg acaggcgccg
     1561 gcgttaccgt cagcgttgcc gtaccggatt ttgtttcgct cgtcgcggta actgttgcag
     1621 taccggcgct cactcccgtt acgacaccgg tgttcgcatt gatggtcgcg accgacgtcg
     1681 gcgtgaccga ccacgtcacc gtgcgccctg acagcgtatt gccgttcgca tccttggtga
     1741 ccgcggtcag ggccgtcgtc tggtgctcga ctacggatgg gttcggcggc gatatggtta
     1801 cggtcgcgac aggtgtcgga gcgaccgtaa tggtcgtggt gccggtcttt ccctcgctca
     1861 ttcccgtgat tgttacggta ccgggcgcta cgcccgtgac tacaccgctc gtggcatcga
     1921 cagttgcaac gctctggttg ctggatgacc acgtgacgct gcggccctgc agcgccgtgc
     1981 cggacgaatc tttcatcacc gctgtcacgg ttgtggtggc accgacttga atactcgagc
     2041 tggcggcgga cacagtgacg gaagcgactg gcaccgggat tactgtcacg acaacggcgg
     2101 tgttctgtcc ttcacacata gctgtgatcg cggtggttcc agcggtcact ccggtgacga
     2161 ctccggtcga tgacacggtc gcaacgcccg gcgtattcga aatccatgta atgaggcgtc
     2221 ctgtcaacgc attgcctgac gcgtcacgcg cggtagcgac aaacgtggcg gtgcttccga
     2281 tatgaactgt cgcgccgctc ggagtgatgg tcaccgaggc gaccgatggt ggcgctgccg
     2341 gcagaaccgt gattgtcgcg ctaccactct tgccttcgct ggtagccgta attgtcgcgg
     2401 agccgggagc gattgcgttg acgacacccg tattcgatac cgtcgcgatc gccgacgcac
     2461 tcgtcgacca cgtgatggtc cgacccgaaa gcgccgcgcc gttcgcatca cgcgcagtag
     2521 cggaaagtgt aactgacccg ccaatgttga gactggctgt ttgcggattc acggctaccg
     2581 acgcaaccgg tatcggcggc ggaggtgtcg tcgccgtcac aaccacctga gccgtgcccg
     2641 tcttgccttc tgcggttgcg gtgatactgg tagcaccagc gcccacacct gttacgagac
     2701 cactcgcgct cacgctcgca atcgctttat tcgccgacgc ccacgtaatg gggcggcctg
     2761 gcagcgtgtt tccgttcgca tcagtcgcga ctgcgtcgaa tgatcgcgat gctccgacat
     2821 cgatgtctgc agatcccggc gtcaccgcaa cagccgcaac cggaatcacg gtaacggtga
     2881 tcgcggacga cgctgtcttg ccctcgatag tgccggatat agttgccgtg cccgccgaaa
     2941 ccgctgtgac cttgcccgac ccgtcgaccg tcgcaaccgg cgaggcagag ctcgcccaga
     3001 cgaccgatct tccgctcagc gcgttggcgt cggcgtcata cgcgaccgcc tgcagagtga
     3061 cagtaccacc tatcacaagc gtcgctgctg aaggaagcac tgctaccgat gcgacgggaa
     3121 cctgcaccac cgtgacagtc gtcaccgtcg acgcgccatt cgagctcgcc gcgacctgtg
     3181 tagtaccgat cgccttcccg gtcacgacgc ctgcctgcga tacggtgacg acgttcgtgt
     3241 cagcgctgga ccagaaaatc gtcgctccgg aaatcacctg accgttcgcg ccgcgcaccg
     3301 ctgcctgcaa tgtgatctga gcgccaattg tgatggacgg cgcgctgggc gttatcgcga
     3361 tctgaacgcc gctgccattg ccaccaccgc cgcctggcga gacggagtcc gtcgaaccgc
     3421 cgcacgcgag aatcgcggcg accgccgtca gagcgcgaaa tccgcgccag caacggtgaa
     3481 ctcgcgacgc gagcgattca cgccggatgc gcatccgggt tttacgctgg tttttcgatg
     3541 taagtcggac ggagacgatg ctcacgtgtc ccgtcgccca actgcccatc aagattatat
     3601 ccccagcaga agagatcgcc ggatgccgtg gtcccgcatg tgtgcgatcc aaaggaattc
     3661 actgtcgtga attcgtgacc accggaaacc ggcaccggta tcgtgcgagt tatcgtgctg
     3721 ccatcgccaa gctgaccata cgtgtttcgg ccccagcacc aggcgtcacc gttgcgtgta
     3781 agtccgcagg tgtgaacgct tcccgccgac aaggcaacga agcgcgcagt accgctcacc
     3841 tcggtcggag tgaagtgcgt gccgtgcgtg ccatctccga gctggccgta ctgattgtca
     3901 ccccagcagt atgctgctcc actggacgtt gtgccgcacg tgtgtgcgct tccggcactc
     3961 aacgtcgcga atcgcacatc gcttcgcacg gccgtcggag tggagcgatc ggtgatcgtg
     4021 ccgtcgccaa gttgcccgga gtcattcgca ccccagcagt aggcacgccc ggagccggtc
     4081 agcccgcaga cgtgattcca gcccgcggcg agcatcgcaa acgaaacact gctggagact
     4141 ctgacgggag tgatccgctc gttcgcagct ccatcaccga tctggccgcg agttcccgcg
     4201 ccccagcagt acgcggtccc gtcgctcgcc agcccgcagc tgaatccgga tccactcacg
     4261 accgatatga gcgagcgggc cagtgcgacg cgcatcggtg tgtcatgcga agcgtgagta
     4321 ccgtcgccga gctgaccatg atcgttgttg ccccagcagt acgcggtgcc acgcgaaagt
     4381 gcgcaggtat gcgacagacc tgccgcgatg ctggagaagt gcacgccgcc actgaccgca
     4441 gtcggtgtcg tcgacgcacc ctgcgacgtg ccggtgccta gctggcctgc gctgttggcg
     4501 ccccagcagt acgtatttcc agccagtgca atgaggcatg tatgcgcacc acctgccgcg
     4561 atcgtcgagc ggccgctcgc taccaccatg agcggcgcgg gggccgttgg cgccggcatc
     4621 gtggcaggga tgtccgcctg cgcggattcc gctgcaatcg aagctgaggt tgcgctcttc
     4681 tgtgcggtat gcggaggagc cggcgcgttc gcgccggatt tctcaccgga cttgttgccg
     4741 gtggttgtgc cggacgttgc accggggtcg ccagttgccg cgactgcgtt cgcatctgtg
     4801 gcacctgaat cgacgcccgt cgcagatgga tcggtagatt gattggttgc cggttgcgcg
     4861 gcgccgatgg caggcacgat tccagcgccg gcggagtcga gtactccata gttgctcact
     4921 ggcgaatgcg gcaccgcggg gaccgctgcg acgggcgcgc gct
//
LOCUS       DATIMD010000218         3181 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4123332, whole genome shotgun sequence.
ACCESSION   DATIMD010000218 DATIMD010000000
VERSION     DATIMD010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3181
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4123332"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1434)
                     /gene="dxs"
                     /locus_tag="VLI40_04985"
     CDS             complement(<1..1434)
                     /gene="dxs"
                     /locus_tag="VLI40_04985"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF003933.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HSU96561.1"
                     /translation="MAILERIVSSSDLKALTRDELRTLADEVRAFLIDSCSRTGGHIG
                     AGLGVVELTIALHTAFNTPTDQIVWDVGHQGYPHKLLTGRASRFGTLRTENGMSGFLK
                     RAESPYDTFGAGHAATAISAGFGMAVGRDLSGESFKVVSVLGDGALTSGLSYEGLNNA
                     GASGRDFIVVLNDNEMSIAPNVGAMAKYLNSVQRNPIYNRLRSAIGTMVDSMPGPLQG
                     MSTLVRKWEESMKSFLTPGVLFEELGFRYFGPIDGHDIDLLLDTFAAVRAMDGPRLVH
                     VVTKKGKGFPAGENVEKWHALPAGHDPATGKQVKASSANPSYTAVFGKGLAELAAIDP
                     KLVAITAAMPSGTGTGVIAKAFPKRFFDVGIAEGHAVTFAAGLATRGIKPVCAIYSTF
                     LQRAYDNVIHDVAIQHLPVVFAMDRAGLVGEDGPTHMGLYDIAYMLSIPGATVTAPRN
                     GREMLALLRTSMEHTDGPFSLRYPRDAS"
     gene            complement(1442..2341)
                     /locus_tag="VLI40_04990"
     CDS             complement(1442..2341)
                     /locus_tag="VLI40_04990"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HSU96562.1"
                     /translation="MPDTGEAVDFASDRSYIDAALRAVCDTLPAMSPRIAQAVQYTLR
                     GPGKRLRGILVAASYRAAGGGGDVYGLAAAIEMLHAYSLAHDDLPCMDNDDVRRGRPT
                     THRACGVPATVVAGVTLIPVAAAAAARAMPKMYHGASSTAPIVAVLMQAAGASGMIGG
                     QLHDLIAEDVPADSLEKLERIHRAKTGALMAASAKVGGMAAGAPAPAVDALGRFGADI
                     GLAFQIVDDVLDVTSSSDTLGKTAGRDAEMGKSTYPALLGVDGAMDRAVSLTQQGCNT
                     LHEHNLLSQELRHLADLVITRTH"
     gene            complement(2334..2546)
                     /gene="xseB"
                     /locus_tag="VLI40_04995"
     CDS             complement(2334..2546)
                     /gene="xseB"
                     /locus_tag="VLI40_04995"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR01280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HSU96563.1"
                     /translation="MSYEKRVERLQEIVADLEGDGLPLDNALKLFEEGIEILRLASDE
                     LTKAEGRVQLLIESAEGVFETREIDA"
     gene            complement(2543..>3181)
                     /locus_tag="VLI40_05000"
     CDS             complement(2543..>3181)
                     /locus_tag="VLI40_05000"
                     /inference="COORDINATES: protein motif:HMM:NF014640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HSU96564.1"
                     /translation="SLVVSAATVQGPNAPAEIVAAIQRICRFGEIDVLIVGRGGGGRE
                     DLWAFNDEAVARAIADATVPVISGVGHEIDVTIADLVADHRAATPSAAAEAAVPMQSD
                     LLAALHDMSDELCASLTERAALARADLESGAIALRRAASIDAERRRAAISITAGRLNA
                     LSPLATLARGYAVARDTSNRTTLASVADFKPGAPFTLTLRDGEVDARVADRP"
BASE COUNT          582 a         1026 c          982 g          591 t
ORIGIN      
        1 cgacgcatca cgcggatatc gcagcgagaa cggtccgtcc gtgtgctcca tgctggtgcg
       61 taggagcgcc agcatctcgc gaccgttcct tggcgcagta acagtcgcac ccgggatcga
      121 aagcatgtac gcaatgtcgt acagtcccat gtgcgtggga ccatcctcgc caacgagacc
      181 tgcgcgatcc atcgcgaaca cgacaggaag atgctggatc gccacgtcgt gtatgacatt
      241 gtcatacgcg cgctgcagga aggtggaata gattgcgcac acgggcttga tcccgcgtgt
      301 tgcaagaccg gccgcgaatg tcacggcgtg cccttccgca attccaacgt cgaagaatcg
      361 ctttggaaat gccttggcga tgactccggt ccccgttccg ctcggcatcg ccgcagtgat
      421 cgcgacgagc ttgggatcga tcgcggcaag ctcggccaat cccttgccga agacggcagt
      481 gtagctcgga ttcgcggacg acgccttgac ctgtttgccg gtagctggat cgtgaccggc
      541 tgggagagcg tgccacttct cgacgttctc gccggccgga aatcccttcc cctttttcgt
      601 tacgacgtga acgagccgcg ggccgtccat cgcgcgcacc gcggcgaacg tatcgagaag
      661 gagatcgata tcgtgcccgt cgatcggacc gaagtaacgg aagccgagct cttcgaacag
      721 aacgcctggt gtaaggaagg acttcatgct ctcctcccat ttgcgtacca gcgtgctcat
      781 tccctgcagc ggtcccggca tgctgtccac catcgtgccg atcgctgacc gcagccggtt
      841 gtagatgggg ttgcgttgca cggagttgag atacttggcc atcgcgccaa cgttgggagc
      901 gatggacatc tcgttgtcgt tgagcacgac gatgaaatcg cgaccggagg cgccggcatt
      961 gttcaatcct tcgtacgaaa gacccgacgt aagcgcacca tcgccgagca ccgacacgac
     1021 cttgaacgac tcgcccgaga gatcgcgccc gaccgccatt ccaaaaccgg ctgagatcgc
     1081 cgtcgcggca tgacccgcgc caaacgtgtc ataagggctc tcggcgcgct tgagaaagcc
     1141 tgacatgccg ttctcggtgc gtaacgtgcc gaagcggctc gcacgacccg taagcagctt
     1201 gtgcggataa ccctggtgtc cgacgtccca cacgatctgg tcggtcggtg tattgaacgc
     1261 agtatgcagc gcgatggtca gctcgaccac gccgagtccc gcgccgatgt gacctcccgt
     1321 tcgggagcat gaatcgatga gaaacgcgcg cacttcgtca gcgagcgtgc gcagctcgtc
     1381 gcgcgtgagc gcctttagat ccgacgacga tacgatccgt tcaagaattg ccatctttcc
     1441 ttcagtgcgt gcgagtaatc accagatcgg ccaggtgacg aagctcctgg ctgagcaggt
     1501 tgtgttcgtg caacgtgtta cacccctgtt gcgtgaggga tacagcgcga tccattgcac
     1561 catccacacc cagcaacgcg ggatacgtac tcttgcccat ctcggcgtcg cgtccggcag
     1621 tcttgccaag cgtatcggac gaagaagtga catcgagcac gtcatcgact atctggaagg
     1681 cgagaccgat gtcggcaccg aaccttccga gcgcgtcgac cgccggtgcg ggcgcgccag
     1741 ccgccattcc gccgaccttt gccgaagcag ccatcagtgc gcccgtcttg gcgcggtgaa
     1801 tccgttccag tttttcgagc gaatcagccg gtacatcttc tgcgatgaga tcatgaagct
     1861 gccctccaat cataccgctc gcgccggcgg cctgcatgag tactgcaacg atcggcgccg
     1921 tactcgacgc gccgtggtac atcttcggca tcgcgcgagc cgcggcagcc gcggcgacgg
     1981 gaatgagcgt gacgccagcc acgacagtcg cggggacgcc gcacgccctg tgcgtcgtcg
     2041 gccgccccct gcggacgtcg tcgttgtcca tgcacgggag atcgtcatgc gcgagcgagt
     2101 aggcgtgcag catctcgatg gcggcagcca agccgtagac gtcgccgcca ccgccagctg
     2161 cgcggtatga cgccgccacg aggattccgc gcagtcgctt gcccggtccg cgcagcgtgt
     2221 actggacggc ttgagcgatg cgcggcgaca tcgcggggag cgtatcgcac acggcacgga
     2281 gcgcagcatc gatgtagctg cggtcggatg cgaagtccac cgcttcgcca gtgtcaggca
     2341 tcgatctcgc gcgtctcgaa gacgccttcc gcgctctcga tgagcagttg aacgcgacct
     2401 tcagccttgg tgagctcatc ggacgcaaga cggagtatct ctatgccttc ctcgaacagc
     2461 ttgagcgcgt tgtccagagg tagtccgtcg ccttccagat ccgcgactat ttcctgaagc
     2521 cgctcgactc gcttctcgta gctcatggcc tgtccgcgac gcgcgcgtcg acttcgccgt
     2581 cgcgcaatgt gagagtgaag ggggcacccg gcttgaagtc ggcgacgctt gcgagcgttg
     2641 ttctgttgct tgtgtcacga gcgaccgcgt aaccacgcgc gagcgtcgcg agcgggctga
     2701 gcgcgttgag acggccagcc gtgatgctga ttgctgcgcg gcgccgctcc gcatcgatcg
     2761 acgccgcacg tcgaagcgcg atggctccgc tctcaagatc ggcccgggcg agcgccgcac
     2821 gctcggtgag tgatgcgcac agctcgtcgc tcatgtcgtg caatgccgcg agcaggtcgc
     2881 tctgcatcgg caccgctgcc tcggctgcgg cggatggcgt cgcggcgcga tgatccgcga
     2941 cgagatccgc aatcgtcacg tcgatctcgt gcccgacacc ggaaatcacc gggaccgtcg
     3001 catcggctat cgcacgcgcg acggcttcgt cgttgaaagc ccagagatcc tcacgtccgc
     3061 cgccaccgcg tccgacgatc agaacgtcga tttcaccgaa gcggcagatg cgttgaatcg
     3121 cagcgactat ttcggccggc gcatttggcc cctggaccgt cgcggcgctc acgacgagac
     3181 t
//
LOCUS       DATIMD010000219         5436 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3834779, whole genome shotgun sequence.
ACCESSION   DATIMD010000219 DATIMD010000000
VERSION     DATIMD010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5436
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3834779"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1081
                     /locus_tag="VLI40_05005"
     CDS             <1..1081
                     /locus_tag="VLI40_05005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96565.1"
                     /translation="WYGKVLELDPRNEEISAFLASLSAPGTKAFVPPVTPERQAPPTI
                     RPEPTPDASAVRLEDIFSQPDMAQTPFSAEEKAEPEAPEPQSEQVFEEVSSESFEVTE
                     WPTAMDTPIDLEPDSTSVIEGPWHTAADEEPASEAAHWTDESAEERTPLRFAEFMPEE
                     DAAFAPTPEELGETEPAAKAEAAPVGEAGPELASPAPETAGTSDNIESAPSAAQEPQA
                     EQQQPAHQASAQQSGAHPMSERESSPFVTETMAELYLSQGLRGEALAIYRQLVVRRDD
                     PALRQKIAELEAAPPQQAGRETVRAFFARIGARRPNERVEIAAQRESSLAALFGSAQP
                     DANDVSAAQRLSGAFGTSQSGASHS"
     gene            1089..1541
                     /gene="aroQ"
                     /locus_tag="VLI40_05010"
     CDS             1089..1541
                     /gene="aroQ"
                     /locus_tag="VLI40_05010"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HSU96566.1"
                     /translation="MGTLRVAVINGPNLNMLGVREPGIYGSETLAQIQDNLTSVAAEL
                     DATLDFFQSNSEGDLVTAVQKLRGAADGALVNAGAYSHSSIALRDAFAAVSVPFVEVH
                     LSNVHAREPERHNLVLAGSAIGVVCGLGGYGYEAGLRGLVRNLRARKQ"
     gene            1538..2635
                     /locus_tag="VLI40_05015"
     CDS             1538..2635
                     /locus_tag="VLI40_05015"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HSU96567.1"
                     /translation="MTDRRSARAALLVDALTEHHLDALLVTGRANIRYITGFSGSSAL
                     LLVTARDSVLITDFRYQTQVRDEVGDLVRVRVEETSLWDGLWAELGQFPGRAVIGFGS
                     AHVTHREFQRFLDDAAGARWQWRPQGDIVEGLRESKDEAEVALIQQAAGMATRALAKT
                     LQQVRTGITELQIAGILEKALRDEGSEAHPFETIVASGPRSALPHARASRRVVERNDL
                     LLLDFGAEYGGYCSDITRTVVVGHASDDVRAVYDIVRVANERAARAVHAGMIGSDADA
                     VARDYISAAGFGGDFGHSLGHGIGLEVHEAPRLARTAAAKLPADTVVTIEPGIYRPEW
                     GGVRIEDDVYLSADGPRMLTDFTHELLELSA"
     gene            2632..3126
                     /gene="accB"
                     /locus_tag="VLI40_05020"
     CDS             2632..3126
                     /gene="accB"
                     /locus_tag="VLI40_05020"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HSU96568.1"
                     /translation="MIDLRYVKKLVEMLDESTVDSIEISTEKGMKIRISKTPQQRGGL
                     AVAQPMAMPAAAAPQLPPAAPAAPSAESVAAARADEARAGYLEVKSPMVGTYYSSPEP
                     GAKQYVNVGERIAKGQTLCIIEAMKIMNEIESEYDGVLREILVDNAQPVEYGQVLFRI
                     DPNA"
     gene            3136..4293
                     /locus_tag="VLI40_05025"
     CDS             3136..4293
                     /locus_tag="VLI40_05025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HSU96569.1"
                     /translation="MGSAEAGAPASASSFDYKAILLQMVQRNASDLHIKVGRPPTLRI
                     NGELVPLELPAIRLEDVRHIAEQSMTARHMKEFAELKECDYALGVPGVGRFRVNAYQQ
                     RGTIAYAFRSVPFQARTIGELNLPSVAEKIAMAPRGLVLVTGITGSGKSTALAAMLQH
                     INLNRFANIITIEDPIEFLHRDINSHINQREVGNDTTTFAQALRRVLRQDPDVILVGE
                     IRDMETLDTALQAADTGHLVFSTLHTTDATQTINRILSFYPPNQGAEVRFMLSSALHA
                     IVSLRLVPRKDGAGRVPAAEVLINTQAVRDNIRDVEKSLNIPDLIREGTAHYGMQSFD
                     QSLMYWYTNGVITYEAALGAATSPSEFALRVQGVAGASDTHWDAFTEAGIQ"
     gene            4296..>5436
                     /gene="accC"
                     /locus_tag="VLI40_05030"
     CDS             4296..>5436
                     /gene="accC"
                     /locus_tag="VLI40_05030"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HSU96570.1"
                     /translation="MFNKILIANRGEIALRVIRACKELGVQTVAVYSEADRESLHVRF
                     ADDDVCIGPAPARESYLNIPRLIAAAEITGADAIHPGYGFLAENAEFAETCAASNIAF
                     IGPTAEQIRVMGDKASARRAMQEVGVPIVPGSPGPVEDVDEALRFAVQIGFPVIIKAS
                     AGGGGKGMRVAADPDDFARAFQLARSEALSAFGNGDVYVEKYLARPRHIEFQIMGDSH
                     GNVIHLGERDCSVQRRHQKLIEEAPSPAMTPELRQAMGDAAVRGAKAINYVGAGTIEM
                     LLNEDSSFYFMEMNTRIQVEHPVTEMLTGIDLVKEQIRVAAGERLSVTQLPALRGHVI
                     ECRVNAEDPARNFQPSPGRIDVFHPPGGPGVRLDTHVYTGYSVPPY"
BASE COUNT         1049 a         1672 c         1757 g          958 t
ORIGIN      
        1 ctggtacggc aaggttctcg agctggatcc caggaacgaa gagatctcgg ctttccttgc
       61 gtcgctctcc gcacccggta caaaggcgtt cgtacctccg gtcaccccgg agcgtcaggc
      121 gccgccaacg atccggcccg agccgacgcc cgatgcgtcg gcggtacgcc tcgaagacat
      181 cttctcgcag cctgacatgg cacagacccc cttctcggca gaagagaagg cagagccaga
      241 agcacccgag ccacaatccg aacaagtgtt cgaggaggtt tcgagtgagt cgttcgaggt
      301 aacggaatgg ccgactgcga tggatacgcc aatcgacctg gaaccggatt ccacctcggt
      361 catcgagggg ccgtggcata ccgcggcaga cgaagagcca gcatccgagg ccgctcactg
      421 gacggatgag agcgccgaag agcgcacgcc gcttcgtttc gccgagttca tgcccgagga
      481 ggacgccgca ttcgcgccga ctccggaaga gctgggcgag accgagcctg cggcaaaggc
      541 tgaagctgcg cccgtaggtg aggctgggcc ggaactggcg tctcctgccc ccgaaaccgc
      601 cgggacgagt gataacatcg aatccgcacc gtcagccgct caggagccgc aggcagagca
      661 gcaacagcct gctcaccagg cgtccgcgca gcaatccggt gcacatccga tgtctgagcg
      721 tgagtcgtct ccgttcgtca ccgaaacgat ggctgagttg tatctcagtc agggactacg
      781 cggcgaagcg ctcgcgatct accgacagct tgtcgttcgc cgcgacgatc cggcgctgcg
      841 ccagaagatc gccgagctgg aggccgcgcc gccacaacag gccggccgtg aaacggtgcg
      901 tgccttcttc gcacggattg gtgcacgccg tcccaacgag cgggtggaga tcgctgcaca
      961 gcgtgaatcg tcgctggccg cactcttcgg atctgctcag ccagacgcaa acgatgtgag
     1021 cgcggcgcaa cgtctctccg gcgcgttcgg cacttcgcag tccggcgctt cgcactcctg
     1081 acggcacggt gggcactctg cgtgtcgcgg tcatcaacgg cccgaatctc aacatgctcg
     1141 gtgttcgcga gcctggaatt tacggcagcg agacactcgc acagattcag gacaacctga
     1201 cgagtgtcgc cgccgagctg gatgcaacgc tcgacttctt tcagtccaat agcgaaggcg
     1261 acctcgtaac cgcggtgcaa aagctgcgcg gcgcggccga tggcgcgctt gtaaacgcgg
     1321 gtgcgtactc gcattcgagc atcgcgctgc gcgacgcgtt cgccgccgta tctgttccat
     1381 ttgtcgaagt tcatctctcc aacgttcatg cacgcgagcc cgagcgtcat aacctcgtgc
     1441 tcgcaggctc agcgatcgga gtggtgtgcg gattgggcgg ctacggttac gaagccgggc
     1501 ttcgcgggct agttcgcaac ttgcgagcgc gcaagcaatg acagaccgcc ggagtgcccg
     1561 cgccgcgctg ctggtcgacg cgctgacgga gcatcatctc gatgcgttgc tcgttaccgg
     1621 tcgcgccaac attcgctaca tcaccggatt ctcgggatcg tcggcgctgc tcctggtgac
     1681 tgcgcgggac agtgtgctca tcaccgattt cagatatcag acgcaggtac gtgacgaagt
     1741 cggcgatctc gtccgggttc gcgtcgagga gaccagtctg tgggacggcc tgtgggcgga
     1801 gctcgggcag tttccggggc gcgccgtcat cggctttggc tccgcgcacg tcacgcatcg
     1861 cgaatttcag cgctttctcg acgacgctgc tggtgcgcgc tggcaatggc ggccgcaggg
     1921 cgatatcgtc gagggactgc gcgaatccaa ggacgaggcg gaggtcgcgc tcattcagca
     1981 ggcggccggc atggcgacgc gcgcgctggc gaaaacgttg cagcaggtcc gcacaggaat
     2041 cacggagctg cagattgccg ggattctcga gaaggcgttg cgcgacgagg gcagcgaggc
     2101 tcatccgttc gagaccatag tcgcgtccgg gccgagatcg gcgctgccac atgcacgcgc
     2161 aagtcgacgc gtcgttgagc gcaacgatct tcttctgctc gactttggcg ccgagtacgg
     2221 cggttattgc tccgacatca cgcgaacggt cgtcgtcggt cacgcgagcg acgacgtacg
     2281 cgcagtgtac gacatagtcc gcgtcgcgaa cgagcgtgcg gcccgggctg tacatgcggg
     2341 aatgatcggt tccgatgccg atgccgttgc acgcgattat atatctgccg ccggcttcgg
     2401 cggcgatttc gggcattcgc tcggccatgg catcggcctc gaagtgcacg aggctccgcg
     2461 gttggcacgt actgctgccg cgaaactccc ggccgacacg gtcgtcacca ttgaaccggg
     2521 catctatcgt ccggagtggg gcggcgttcg gatcgaggat gacgtatatc tcagcgcgga
     2581 tggaccgcgc atgctgaccg attttaccca cgaactgctg gagctgtccg cgtgattgat
     2641 ctgcgctatg tcaagaagct ggtcgagatg ctggacgagt ccaccgtcga ctcgatcgag
     2701 atctcgaccg aaaaggggat gaagatccgg atctccaaga caccgcagca gcgcggcggt
     2761 ctggcggtcg cccagccaat ggcgatgccg gcggccgcgg caccgcagct tccaccagcc
     2821 gctcccgcgg caccgagcgc ggaaagcgtc gcggcggcgc gcgcggacga agccagggcc
     2881 ggttacctcg aagtgaagtc accgatggtc ggcacctact attcctcgcc ggagccgggc
     2941 gcaaaacagt acgtgaacgt cggcgagcgc attgcgaagg gtcagacgct ctgcatcatc
     3001 gaagcgatga agatcatgaa tgagatcgag tcggagtacg atggcgtgtt gcgcgaaatt
     3061 ctggtcgaca atgcgcagcc ggttgaatat ggtcaggtgc tcttccgcat cgaccccaac
     3121 gcgtaggcgg cacaaatggg tagcgcagaa gcgggagcgc cagcgagcgc atcgtcgttc
     3181 gactacaagg caatactgct gcagatggtt cagcgcaacg cgtccgatct gcacatcaag
     3241 gtcggtcgtc caccgaccct gcgcatcaac ggtgagctgg tgccgctgga gctgccggca
     3301 atcaggctgg aggatgtgcg ccacatcgcc gagcagtcga tgaccgcgcg ccacatgaag
     3361 gagttcgccg agctcaagga atgcgactac gcactcggcg ttccgggtgt gggccgcttt
     3421 cgcgtcaatg cttatcagca acgcggaacc atcgcgtacg cgtttcgctc ggtgccattt
     3481 caggcgcgaa cgattggaga gctgaacctt ccgtcggtgg ccgagaagat cgccatggcg
     3541 ccgcgcggac tggtcctcgt gactggcatc acgggatccg gaaagtcgac tgcgctcgcg
     3601 gcgatgctgc agcacatcaa tctcaatcgc ttcgcgaata tcatcaccat cgaggacccg
     3661 atcgagttcc tccatcgcga catcaactcg cacatcaacc agcgcgaggt ggggaacgac
     3721 acgacgacgt tcgcgcaggc gctccggcgt gtgctgcgac aggatccgga tgtgatcctg
     3781 gttggtgaga tccgcgatat ggagacgctg gacacggcgc ttcaggcggc cgacacgggt
     3841 catctcgtct tctcgacact gcatacgacg gatgcgaccc agaccatcaa ccgcattctg
     3901 tcgttctatc cgcccaatca gggtgcggaa gtccgtttca tgctttcgag cgcgctccac
     3961 gcgatcgtat cgctgaggct ggtgccaaga aaggacggcg ccggccgcgt tcccgcggca
     4021 gaagttctga tcaacacaca ggcggttcgc gacaacatcc gcgacgtgga aaaatcgcta
     4081 aacattccgg atctcatccg cgaagggacg gctcattacg gcatgcagag tttcgaccag
     4141 agtctcatgt actggtacac caatggcgtc atcacgtacg aggcggcgct tggcgccgcg
     4201 acgagtccga gcgagttcgc gctgagagtg cagggtgtcg ccggcgccag cgacacgcac
     4261 tgggacgcgt tcaccgaagc cggtatccag tagcggtgtt caacaagatt cttattgcga
     4321 accgcggcga gatcgcgctg cgtgtaattc gtgcgtgcaa ggaactcggt gtgcagacag
     4381 tcgccgtcta ctccgaagcc gatcgcgagt cgctgcacgt gcgcttcgcc gacgacgatg
     4441 tctgcatcgg accggcgccc gcgcgtgagt cgtatctcaa catcccgaga ctcatcgccg
     4501 cggccgagat aacaggcgcc gatgcgattc atccaggtta cggattcctg gcggagaatg
     4561 cggaattcgc cgagacctgc gcggcgtcga acatcgcatt catcgggccg acggcggagc
     4621 agatacgcgt gatgggcgac aaggcttcgg cgcgtcgcgc gatgcaggaa gtgggagtgc
     4681 cgatcgttcc aggctcgccg ggtcctgttg aagatgtgga cgaggcgctc aggttcgccg
     4741 tgcagatcgg attccccgtg atcatcaagg cgtccgccgg aggcggcgga aagggaatgc
     4801 gcgtggccgc cgatccggac gatttcgcgc gcgcgtttca gctggcccga tccgaagcgc
     4861 tatccgcgtt cggcaatggc gacgtatacg tcgagaaata cctcgcacgg ccgcgccaca
     4921 tcgaatttca gatcatgggt gattcacatg gaaacgtgat tcaccttggc gagcgtgact
     4981 gttcggttca gcgcaggcac cagaagctga tcgaggaagc gcccagcccg gcgatgacgc
     5041 cggagctgcg ccaggcgatg ggtgacgccg cagtgcgtgg cgcgaaggcc atcaattacg
     5101 ttggtgccgg caccatcgag atgctgctga acgaggacag ctcgttctac ttcatggaga
     5161 tgaacacccg catccaggtc gagcatcccg ttacggaaat gctcaccggg atcgatctcg
     5221 taaaggagca gatacgggtt gctgcgggcg agcggctcag cgtcacgcag ttgccagcgt
     5281 tgcggggcca cgtgatcgaa tgccgcgtga acgcggaaga tccggcccgc aatttccagc
     5341 cgtcacccgg ccggatcgac gtgttccatc cgcccggtgg tccgggcgtc cgcctcgaca
     5401 cgcacgtgta cacgggctac agcgtgccac cgtact
//
LOCUS       DATIMD010000220         3035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_662421, whole genome shotgun sequence.
ACCESSION   DATIMD010000220 DATIMD010000000
VERSION     DATIMD010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_662421"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1235)
                     /locus_tag="VLI40_05035"
     CDS             complement(<1..1235)
                     /locus_tag="VLI40_05035"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 87 protein"
                     /protein_id="HSU96571.1"
                     /translation="MPDISPSDSSGRPRGKRLLLFVLGSLFLANIVQWGLCRISDLGN
                     PGGMKGPFLDFLHVRQWTDSWLPMMKSLDYFHAHPTEPIYYAHLYDTLIYPLASLLPL
                     AALRKFGLDDPALLRFLSVTSWLAVVGVGVASVWMGRVLLRRRNVSLDWRSIVAVMLA
                     CAGCYPLVKGYSIGNAQTFLSFLFTVLLLLWTTGRERAGGVVAALLAFVKPQYGLLLV
                     WMIVRRRWNAAIAFLACSVVLVALSVAVFGVHNNLDYIHVLASLSRKAQSHFANQSMF
                     GTLNRIIGNGENISYTPHLYTPYIPWVYDVTLATGLILIGGALFFPWGKLRGSTGDLA
                     ATGLASVASSPMAWEHHYGIVFSIGAWVWFAYGSAQEKRPWVLALATFLTTNALLSTN
                     YLAPYLGWNVLQSYIYFGAL"
     gene            1282..2037
                     /locus_tag="VLI40_05040"
     CDS             1282..2037
                     /locus_tag="VLI40_05040"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSU96572.1"
                     /translation="MDNTERFNDRVELYERYRQRYPTDLVLNLLRKWCGLQPDWLVAD
                     VGAGTGMLSEVFLANGNPVVAIEPNAGMRAACERLLEQWPKLQVKDATAEKTGLPNGS
                     VEIVAAGRAFHWFDTERALQEFRRVLVPDGWVVLAAIARGKDDSAQGMAFEHLLVECA
                     TDYACIRGGYRIHEQLGSLFPRELHQDHIDSEESLSWDEFLGQTMSASIAPTRDDPRF
                     PAFEQAMKEHFAEFANDGMLRMTTTCWVSAGRL"
     gene            complement(2051..>3035)
                     /locus_tag="VLI40_05045"
     CDS             complement(2051..>3035)
                     /locus_tag="VLI40_05045"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF015284.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009063 - amino acid catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HSU96573.1"
                     /translation="RKVPYPYSSAAELLQTGEEKRLSIPEIVLANEVALLGDPTITRR
                     IDRIVSPARPGNDAPPDMATLSPEHQVETAILTLWHTMEQCIERGLHTEGTLPGGLNV
                     RRRAPGLAARAARLDAEGRQRDPLAPLDTVTMVAMAVNEENAAGGRVVTAPTNGAAGV
                     IPAIAYYYLHYASEGLSEADKQAGLLRYFLAAAAIGILYKENASISGAEVGCQGEVGV
                     ACSMAAGGLVAALYGDNAAIEHAAEIAMEHNLGMTCDPIGGLVQIPCIERNGMGAVKA
                     VNAARLAMNDPGTHKISLDQVIETMYRTGMDMQSRYKETSLAGLALNIIEC"
BASE COUNT          603 a          965 c          957 g          510 t
ORIGIN      
        1 agcgcgccga agtagatgta cgactgcagc acgttccacc cgaggtatgg cgcgagatag
       61 ttggtcgata gaagcgcatt ggtggtgagg aacgtcgcaa gcgcgagcac ccatggccgc
      121 ttctcctgcg cactgccata cgcgaaccag acccacgccc cgatgctgaa cacgatgccg
      181 tagtgatgct cccacgccat cggcgaggac gcgaccgaag ccagcccggt agccgcgaga
      241 tcgccagtcg agccgcgcag cttaccccag ggaaagaaca gcgctccacc gatgaggatg
      301 agcccggtcg cgagcgtaac gtcgtagacc cacgggatgt agggcgtgta cagatgcggg
      361 gtgtagctga tgttttcgcc gttgccgatg atgcgattca gcgttccgaa catcgactgg
      421 ttcgcgaagt gcgactgcgc cttgcggctg aggctcgcga gcacgtggat gtagtcgaga
      481 ttgttgtgca cgccaaacac ggcgacggac agcgcaacca gcacaaccga gcacgcgaga
      541 aacgcgatcg ctgcgttcca tcggcggcgc acgatcatcc acacgagcag cagcccgtac
      601 tgcggcttca cgaacgcgag cagcgcggcc acgacgcctc ccgcgcgttc acgcccggtt
      661 gtccatagca gcagaagaac ggtgaagagg aacgacagaa acgtctgtgc gttgccgatc
      721 gagtacccct tgaccaaggg gtagcatccc gcgcacgcaa gcatcacggc cacaatcgac
      781 cgccaatcca gcgagacgtt ccggcgccgc aaaagcacgc gtcccatcca gacagaggcg
      841 acaccaacgc caacgactgc gagccacgag gtcacagaaa gaaaacgcag cagcgcagga
      901 tcatccaggc cgaacttccg cagcgcggcc agcggaagca ggctggcgag tggatagatc
      961 aacgtgtcgt atagatgcgc gtagtagatc ggctcggtgg gatgcgcgtg gaagtagtcg
     1021 agtgacttca tcatcggcag ccacgagtcg gtccactggc gcacgtgaag gaagtcgagg
     1081 aacggccctt tcatcccgcc gggatttccc aggtcgctga tgcggcagag accccactgc
     1141 acgatattcg cgagaaagag gctgccgagc acgaacaaca gcagtcgctt gccccgaggg
     1201 cgcccgctgg aatcgctcgg cgagatgtca ggcattctgg ttaagtatag cggtcacgtt
     1261 gcgggagcat ggtaagcaga gatggacaac acagagcgtt ttaatgatcg ggtcgagctg
     1321 tacgagcgct accgccagag atatccaacg gacctggtgc tgaacctgct gcgcaagtgg
     1381 tgtggtctgc agcccgactg gctcgtcgcc gatgtgggcg cgggcaccgg catgctgagc
     1441 gaggtcttcc tcgcgaacgg aaatcccgtc gtggccattg aaccgaacgc cgggatgcgc
     1501 gcggcctgcg agcgactgct cgagcaatgg cccaagcttc aggtgaaaga tgccacagcc
     1561 gagaagaccg gtttgcccaa cggctcggtc gagatcgtcg ccgcaggccg cgcgtttcac
     1621 tggttcgaca cagaacgcgc gctgcaggag tttcggcgcg tgctggtgcc cgacggatgg
     1681 gtggtgctgg ctgcgatcgc gcgcggcaag gacgacagcg cccaaggcat ggcgttcgag
     1741 catctgctgg tggagtgcgc aacggattac gcctgcattc gaggcggtta tcgcattcac
     1801 gagcaactgg gctcgctgtt cccgcgcgaa ctgcaccagg accacatcga cagtgaagag
     1861 tccctcagtt gggacgagtt cctcggccag acgatgtccg cgtccatcgc gccgacgcgg
     1921 gacgatccgc gctttcccgc attcgagcag gccatgaagg agcacttcgc cgagttcgca
     1981 aacgacggca tgttgcggat gacgacgacg tgctgggtga gtgcgggcag actctaacac
     2041 ggcaatcagc tcagcattcg atgatgttca gcgccagccc cgcgagcgaa gtctccttgt
     2101 agcgcgactg catgtccatg ccggtccggt acatggtctc gatcacctga tcgagcgaga
     2161 tcttgtgcgt cccgggatcg ttcatcgcga gtcgcgcagc gttgacggcc ttcactgcgc
     2221 ccattccgtt gcgttcgatg catggaatct gcacgagtcc gccgatcgga tcgcacgtca
     2281 tcccgaggtt gtgctccatc gcaatctcgg ccgcatgttc gatcgcggcg ttgtcgccat
     2341 agagcgcggc cacaagtccg ccagccgcca tcgagcacgc gacgcccacc tcgccctggc
     2401 atcccacctc cgcgccggag atgctcgcgt tctccttgta caagatcccg atcgcagccg
     2461 ctgcaaggaa gtagcgcagc aggcccgctt gcttatcagc ctcgctgagt ccttcgctcg
     2521 cgtagtgcaa atagtaataa gcgatcgccg ggataacacc tgccgcgccg ttcgtcgggg
     2581 ccgtgacgac gcggccaccc gcagcattct cctcgttcac agccatcgcc accatcgtga
     2641 ccgtgtcgag cggcgcgagc gggtcgcgtt gcctgccctc tgcgtccagc cgcgccgcgc
     2701 gtgccgcaag gcccggtgct cgccgacgca cgttcaggcc gccgggcagc gttccctccg
     2761 tgtgcagccc gcgctcgatg cactgctcca tggtgtgcca cagcgtaaga atggcagtct
     2821 ccacctggtg ctcaggcgaa agcgtagcca tgtcaggcgg cgcatcattg ccgggccgcg
     2881 cgggcgagac gatccggtcg attcgccgcg tgatcgtcgg atcgccgagc aatgcgacct
     2941 cgttcgccag cacgatctcc ggaatcgaga gacgcttctc ctcacctgtc tgcagaagct
     3001 ccgccgcgct cgagtacgga tagggcacct tgcgc
//
LOCUS       DATIMD010000221         9546 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3547644, whole genome shotgun sequence.
ACCESSION   DATIMD010000221 DATIMD010000000
VERSION     DATIMD010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9546
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3547644"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..481
                     /locus_tag="VLI40_05050"
     CDS             <1..481
                     /locus_tag="VLI40_05050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HSU96574.1"
                     /translation="DGDEIVIEPWRARAFPIIKDLVVDRSAFDRIIQRGGYVSVNTGG
                     APDGNDILIGKSSADHAMDAAACIGCGACVAACPNASSSLFTGAKITHLGKLPQGQPE
                     RDRRVIGMVEQMDIEGFGNCSWFGECQEACPKEISIDVIKQMNRDYVSASARASSNE"
     gene            496..741
                     /locus_tag="VLI40_05055"
     CDS             496..741
                     /locus_tag="VLI40_05055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96575.1"
                     /translation="MAEESTNDHPDPKFVDSETALGGADAVEKTTYVVGDGTTPEARA
                     PRDRPPSVGRTGPSIIGWVAIAVALLIAITYLIGIWA"
     gene            complement(772..1764)
                     /locus_tag="VLI40_05060"
     CDS             complement(772..1764)
                     /locus_tag="VLI40_05060"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HSU96576.1"
                     /translation="MSMRYPYAFVLMLFCLAQTARAQARGLLFVSNEWSHNVSVIDIA
                     GRRVVATIPVGFRVRGIQASPDGRTIYAATSEMDRKARTGAAGIVAIDVATRRVIARY
                     PAGTDPEQFAVSPDGKRLYISNEDAGAVSVLDLKRRTLVSSAAVGVEPEGVAVSPDGR
                     QVYVTAETSSNVSVVDTRTGHVISTFLVDARPRAAAFSSNGKRAYVTAEVGGTVSLVD
                     PAQNKVTLRARIGDGNAKPVGVVVSPSGDRIYITAGHGNTVSVLDGATLHLIATIPVG
                     KRPWGLVRTRDGSLLFSANGLSNSVSMIDARTDSVVATIPVGNRPWGVAIVEPR"
     gene            1840..3681
                     /locus_tag="VLI40_05065"
     CDS             1840..3681
                     /locus_tag="VLI40_05065"
                     /inference="COORDINATES: protein motif:HMM:TIGR03075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methanol/ethanol family PQQ-dependent
                     dehydrogenase"
                     /protein_id="HSU96577.1"
                     /translation="MCRVRVVAGSVVFVTLAVLACGEPKNREHPPARSSQAVTPPAGD
                     TRANPEAETGDWTQPAKDYANTRYSGLDSINTTNVSRLTLVSTFSTSVLRGHEAAPLV
                     VNNMLYVVTPFPNILYALDLTKPGWPVKWTYKPNPEAAAQGVACCDVVNRGVTYSDGA
                     LYYNTLDDHVVSVDANTGAERWNVKVGDINTGETMTMSPLVAKGKVIVGNSGGELGVR
                     GWIQALDAKTGHTVWKAYATGPDKDVLIGARFKPFYASDRGTDLGVKTWQGDQWKIGG
                     GGAWGWVSFDPALNLIYYGTANPGPWNSNQRPGDNKWTSTIFARDIDTGDAVWAYQLS
                     PHDLHDYDGVNENVLLNLPIDGTTRKVLVHPDRNGYMYVIDRTNGQVLSAKPFVPVNA
                     TDSINMKTGRPAENPQKHPDLDVTVRDICPAPPGGKDWQPSAYSPRTGLLYVPHNNLC
                     YDAEAVDVSYIEGTPYVGMNEKIFVGAGGNGGAFSAWDPVHAREVWSLPERFPVWSGA
                     LVTAGDVVFYGTMDGWFKAVDAHDGKLLWKAKTESGIIGQPTTFIGPDHKQYVAVLIG
                     VGGWAGAIVAGNLDARDSTAAAGFVDAMKDLPKYTTKGGALYVFGLK"
     gene            3662..4522
                     /locus_tag="VLI40_05070"
     CDS             3662..4522
                     /locus_tag="VLI40_05070"
                     /inference="COORDINATES: protein motif:HMM:TIGR03871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HSU96578.1"
                     /translation="MSSVSSKVLALLCAAAAAVVLASCERSAAEEKGAQEKGVATLRV
                     CSDPNNLPFSNARGEGFENRIAQLVASDLHEKLEYTWWAQRRGYLRNTITANKCDVWI
                     GVPSGLGPLLTTQPYYRSTYVFMTRASDPIRVTSFNDPVLRTVRVGVQLVGDDGANTP
                     PAHALSRRHIIRNVRGYHLEADYRRPNPPARIVDALADSEIDVAVVWGPMAGYFATRE
                     PVPLRMTPVSPQVDLPFLPFVFDIAMGARRSDSLLVRRLDSVIVRRRPEIDRILASYG
                     VPRADAPLVQ"
     gene            4540..5085
                     /locus_tag="VLI40_05075"
     CDS             4540..5085
                     /locus_tag="VLI40_05075"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HSU96579.1"
                     /translation="MWRIATVALLMLLGATACEREHRTFHGTPASNAAPIVRVSPLQP
                     GPVLVTDSAPGPYAANAYGMAQGKQLFSQMNCVGCHAHGGGSMGPALMDATWIYGSNP
                     DQIFATIQQGRPNGMPAFRDKLTNDQIWQLVAYVRSLSGLGRRDVRSGRSDEMYGRSS
                     EQNTKTGKPKTTGPASASERP"
     gene            5085..6059
                     /gene="coxB"
                     /locus_tag="VLI40_05080"
     CDS             5085..6059
                     /gene="coxB"
                     /locus_tag="VLI40_05080"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HSU96580.1"
                     /translation="MQLPIPSTWAGHESVFRPSSGSAHVVFGLFTFMLIVSVIVYVVV
                     IAGVLFAARSRTEAGVAAPPGREPALRRAVTIATAVTVLILFADLFYDFGVGRAVAAP
                     RDAGNALRIDVVGHQWWWEVQYQDTAPQRLVTTANEIHVPIHRPVLLNLSSTDVIHSF
                     WIPNLNGKKDLVPGHHNDAWFQVDTTGVYRGQCAEFCGLEHAKMAIIIIAETPEQYQA
                     WYNAQLKAPPPPVDSLRLAGQQVFLSAPCVMCHAIGGTPAGATAGPDLTHIGSRMTLA
                     AGVLPNTASNLESWIADPQHIKPGANMPATHLSRADIHAVTAYLEGLK"
     gene            6071..7990
                     /gene="ctaD"
                     /locus_tag="VLI40_05085"
     CDS             6071..7990
                     /gene="ctaD"
                     /locus_tag="VLI40_05085"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit I"
                     /protein_id="HSU96581.1"
                     /translation="MPVAAPPTPLSADPEAMAELERSWRSSDTGLWGWLTTTDNKRIA
                     KRYIITAFVMFLLGGIDAAMMRLQLSRPENHILGPDLYNQFFSTHGTTMMFLFAVPMM
                     TAMGLYFVPLMVGSREVAFPRLNAFGYYTYLIGCVFLYVEFLMNTGIDVGWFAYVPLA
                     GPQFSAGKRADVWAQTVTFTEIAGIIAAIQIIVTAFKQRAPGMSLNRIPLFVWSMVVV
                     SFMIIFAMPWVAVASQFLAMDRAIDTHLFNPAEGGDAILWQHLFWFFGHPEVYIIFIP
                     GLGMISSIVTTFTRRQIFGYPAMVLSLVATAVLAFGLWVHHMFATPLPQLGESFFTAA
                     SVTIAIPSGVQIFCWIATMWNGRVRLATPMLFVLGFFIVFIIGGLTGVMVASVPFDLQ
                     VHDTYFVVAHLHYVLLGGAVFPLFGAFYYWFPKITGRMLSETLGKWQFWLFLIGVNVT
                     FFPMHILGMEGMTRRVYTYLAATGWGPLNTLASIGAVIIASSVIVFLVNVIMSWRSGA
                     IAGNNPWDSDTLEWATTSPPGPCSFPDIPVVTSRDGLWEQRDDVPVMTGLRTDRREVL
                     VTTLHDAEPESRHMLPGDTIWPFLLALAVGGAFIGAVYAPIGLVIGTIVALPIALGWA
                     WPNEPTEPDMVDDVR"
     gene            7987..8595
                     /locus_tag="VLI40_05090"
     CDS             7987..8595
                     /locus_tag="VLI40_05090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96582.1"
                     /translation="MKPVRVVADVSQLPDVTFGPRSTTWWGTIGFMVTEGLTLVICAF
                     AYLYLRKNFYHYPPEGTRLPSLVVPIIQLIVMLISIVPMVFAARYARKLDVNGVRVAL
                     LIAFVIKLGILVLRWYEFPSLNTQWNSDAYGSAAWIVMGFHTTLLILDIAEDAGFALI
                     LWTGHARPQTMSDVVDDVIYWYFTVAAWIPLFVLLFLYPRWT"
     gene            8547..9008
                     /locus_tag="VLI40_05095"
     CDS             8547..9008
                     /locus_tag="VLI40_05095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96583.1"
                     /translation="MDSTIRAAVPLSAVDVMQVTHASSRSLQDRPAHAGALWFGFLCG
                     PLAALSNEAIEYVLVAWSCGRFDSVSRILLHVVPAALIVLCIIAALVGWGIARAAGGE
                     ESGTAEDHRMHAARSNRAFMGLVAVGLSALGALVILSQWIPVLYLNPCAMA"
     gene            complement(9144..>9546)
                     /gene="dcd"
                     /locus_tag="VLI40_05100"
     CDS             complement(9144..>9546)
                     /gene="dcd"
                     /locus_tag="VLI40_05100"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HSU96584.1"
                     /translation="FTNVLNSIVDPKQFDPKSFVEFEGDVCIVPANSFALACSVEYFR
                     IPRDVVTLCVGKSTYARCGIITNVTPFEPEWEGFVTLEISNTTPLPARIYANEGIAQV
                     MFFRGEEPPITSYKDKKGKYQGQSGVTLPRL"
BASE COUNT         1747 a         2941 c         3029 g         1829 t
ORIGIN      
        1 ggacggtgat gagattgtga tcgagccgtg gcgcgcacgg gcgtttccga tcatcaagga
       61 cctcgtcgtg gatcgcagcg cgttcgatcg catcatccag cgcggcgggt acgtgagcgt
      121 gaacaccggc ggcgcgccag acggaaacga cattctgatc ggcaagtcga gcgcagatca
      181 cgcgatggac gcggctgcct gcatcggctg cggcgcgtgc gtcgctgcct gtcccaatgc
      241 atcgtcgtcg ctgttcacgg gtgcgaaaat cacccacctg ggcaagctgc cgcagggaca
      301 gccggagcgc gatcgccgcg tgatcggcat ggtcgagcag atggatatcg aagggttcgg
      361 aaattgctcg tggttcgggg agtgtcagga agcgtgcccc aaggagatca gcatcgacgt
      421 gatcaagcag atgaaccgcg actacgtcag cgcttcggcg cgcgcgtcca gcaacgagta
      481 aaccggagcg gcctgatggc agaagaatcc acgaacgatc atccggaccc aaaattcgtg
      541 gactccgaaa cggccctggg cggcgccgat gcggtggaaa agacgactta cgtcgtcggt
      601 gacgggacca ctccggaagc gcgcgcgccg cgcgaccggc cgccgagcgt cgggcgtacc
      661 ggccccagca ttatcggatg ggtcgcgata gcagtcgcgc tgttgatcgc gatcacgtac
      721 ctcatcggca tctgggcgtg atcgccgttc gccagcttat gtagccagtc gctagcgcgg
      781 ctcgacgatg gcgactcccc acggacggtt gccgaccggg atcgtcgcca ccacgctgtc
      841 tgttcgcgcg tcgatcatcg acaccgaatt tgaaagcccg ttcgcgctga agagcagcga
      901 cccgtcgcgc gtgcgcacca gcccccaggg ccgcttgccg accggaatcg tggcaatgag
      961 atgaagcgtc gctccgtcga gcactgatac cgtgttgccg tgaccggcgg tgatatagat
     1021 gcggtcaccc gacggtgata ccacaacgcc taccggcttg gcattgccgt cgccgattcg
     1081 cgctcgaagc gtgaccttgt tctgcgccgg atcgaccagc gaaaccgttc caccgacttc
     1141 cgcggtgacg tacgcgcgct tgccgtttga cgaaaacgcc gccgcgcgcg gacgtgcgtc
     1201 gaccagaaag gtcgagatca cgtggccggt gcgcgtgtcg acgactgaaa cgttgctgct
     1261 cgtctccgcc gtcacgtaga cctggcgccc atcagggctc accgcgacgc cttcgggctc
     1321 gacgccgacc gccgcgctcg atacgagagt ccgtcgtttg agatccagca cggatacagc
     1381 gccagcgtcc tcattcgaga tgtagagtcg ctttccatcc ggtgaaaccg cgaactgctc
     1441 cggatcggtg ccagcgggat accgcgcgat cacgcgccgc gtcgcgacgt cgatcgccac
     1501 gatgccagcc gcgccggtgc gcgcctttcg atccatctcg ctcgtggcgg cgtaaatggt
     1561 ccgcccgtcc ggactcgcct ggatgccacg aacacgaaag ccaacgggta tcgtcgccac
     1621 cacgcgtcgg ccggcgatgt cgatgacact gacattgtgc gaccactcgt tgctgacaaa
     1681 caggagcccg cgcgcctgcg ctctcgccgt ctgtgcgaga caaaagagca tgagtacgaa
     1741 cgcgtacgga taccgcatgg acatcacatt atctcgtgac ggaacggttt gtgcgagatg
     1801 cgtgcgacaa cacgaaagag ggcatggagc gtggaacgaa tgtgccgggt tcgcgtcgtt
     1861 gcgggttctg tggtctttgt aacgcttgcg gtacttgcat gcggcgagcc aaagaatcgc
     1921 gagcatccac ccgcgcgcag ctcccaggca gtcacgccgc ccgccggcga tacccgcgcg
     1981 aaccccgagg cagagaccgg cgattggact cagcccgcga aggactacgc caacacgagg
     2041 tacagcgggc tcgacagcat caatacgacg aacgtctcgc gtctgacgct tgtgtcgacg
     2101 ttctcgactt ccgtgctgcg cggccacgaa gcagcgcctc tggtcgtgaa caacatgctg
     2161 tacgtcgtca ccccattccc gaacattctt tacgcgctcg atctcaccaa gccgggttgg
     2221 ccggtgaagt ggacgtataa accaaatccg gaggccgccg cgcagggagt tgcgtgctgc
     2281 gatgtggtga accggggcgt cacgtactcc gacggcgctc tctactacaa cacgctggac
     2341 gaccacgtgg tgtcggtcga cgccaacacc ggcgccgagc gctggaacgt caaggtcggc
     2401 gacatcaata ccggcgaaac gatgacgatg tcgccactcg tcgccaaggg gaaagtcatc
     2461 gttggcaaca gtggcggaga gctgggtgtg cgcggctgga ttcaggcgct cgatgcgaaa
     2521 acgggccaca ccgtctggaa ggcatacgcc accggccctg acaaggacgt gttgatcggc
     2581 gcgcggttca agccgttcta cgcgagcgat cgcggcacgg atctgggcgt caagacgtgg
     2641 cagggcgatc agtggaagat tggtggcggc ggagcctggg gttgggtgtc gttcgatccc
     2701 gcgctcaacc tcatctacta tggtacggcg aatcccggtc cgtggaactc gaatcagcgg
     2761 cccggtgaca acaagtggac ctccacaatc ttcgcgcgcg acatcgacac cggcgacgct
     2821 gtgtgggcat accagctcag tccgcatgac ctgcacgatt acgacggagt caacgaaaac
     2881 gtactgctca atctcccgat tgacggaacg acgcggaagg tgctggtgca ccctgaccgc
     2941 aacggataca tgtacgtgat cgatcgcacc aacggacagg ttctctccgc caaaccattc
     3001 gtgccggtaa atgcgaccga cagcatcaac atgaaaaccg gtcggccggc ggagaatccg
     3061 cagaaacacc ctgacctcga cgtaactgtg cgtgacatct gccccgcgcc accgggcgga
     3121 aaggactggc agccatcggc gtattctccg cgcacgggtc tgctgtacgt gccgcacaac
     3181 aatctgtgct acgatgccga agcggtcgac gtgagctaca tcgaaggcac gccgtacgtc
     3241 ggcatgaacg agaagatctt tgttggggca gggggcaacg gcggcgcatt ctccgcatgg
     3301 gatcccgtgc acgcgcgcga ggtgtggtca cttccagagc ggttcccggt ctggagcggc
     3361 gcgctcgtca ccgcgggcga cgtcgtgttt tacgggacga tggacggctg gttcaaggcc
     3421 gtcgacgcgc acgacggaaa gctcttgtgg aaggcgaaga ccgaatcggg catcatcggc
     3481 cagccgacca cattcattgg gcccgatcac aagcagtacg tcgcggtgct gatcggcgtc
     3541 ggcggttggg cgggagcgat cgtcgcgggc aatctcgatg cgcgcgattc tacagctgcc
     3601 gccggcttcg tcgacgcgat gaaggacctt cccaagtaca cgaccaaggg cggcgcactg
     3661 tatgtcttcg gtctcaagta aagtccttgc tttgctctgc gccgcggccg ccgccgtggt
     3721 gctcgcgtcg tgcgaacgct cagccgcgga ggagaagggt gcgcaggaga agggtgtggc
     3781 gacgctccgc gtgtgttccg atccgaacaa tctgccgttc tccaacgcgc gcggcgaagg
     3841 attcgagaac aggatcgcgc agctcgttgc aagcgatctg cacgaaaagc tggaatacac
     3901 ttggtgggcg cagcggcgtg gctatctgcg caacaccatc accgccaaca agtgcgatgt
     3961 gtggatcggg gtcccgagcg gtctcgggcc attgcttacc actcagccat actatcgctc
     4021 gacgtacgtg ttcatgacac gggccagcga tccgatacgc gtaacctcct tcaacgatcc
     4081 cgtactgagg acggttcgtg tgggcgtcca gctggttggc gacgacggcg ccaacactcc
     4141 gccagcgcac gcactgagtc ggcggcacat cattcgcaac gttcgtggat atcacctcga
     4201 agctgattac cggcggccga atccgcctgc acgtatcgtc gatgcactcg ccgacagcga
     4261 gatcgatgtc gcggttgtct ggggaccgat ggcgggctac ttcgcgacgc gcgaaccggt
     4321 accgcttcgc atgactccgg tttcgccgca ggtggatctc cccttcctgc cgttcgtgtt
     4381 cgacatcgcg atgggtgcgc gacgcagcga ctcgctgctc gtgcggcggc tcgactctgt
     4441 gatcgtacgt cgtcgtcccg aaatagatcg tatccttgcg tcatacggcg tcccgcgcgc
     4501 agacgcgcca cttgtccagt agcaatggag gtcacagtga tgtggcgaat cgcaacggtt
     4561 gctctgctca tgctactcgg cgcgaccgcg tgcgagcgtg agcacaggac atttcacgga
     4621 acgcccgcct ccaatgcagc gccaattgtt cgcgtgagcc cactccagcc cggaccggtc
     4681 ctggttaccg acagtgcgcc cggcccgtac gccgccaacg cgtacggaat ggcgcagggc
     4741 aagcaactct tttcgcagat gaactgcgtc ggctgtcacg ctcacggtgg cggctcgatg
     4801 ggacccgcgc tgatggacgc gacgtggatc tacggcagca acccggacca gattttcgca
     4861 accattcaac agggccgccc gaacggcatg ccggcattcc gtgacaagct caccaacgac
     4921 cagatctggc agcttgtcgc ctacgtgcga tcgctgagcg gtctgggtcg ccgcgacgtt
     4981 cgcagcggac gctcggatga gatgtacgga cggtcgtcgg agcagaatac caagacggga
     5041 aagccgaaaa cgacgggccc ggcgtccgcg tccgagaggc cgtgatgcag ctgccgattc
     5101 cgtcaacatg ggcaggccac gagtcggtct tccgcccgtc gagcgggtcg gcgcatgtcg
     5161 tgttcgggct tttcacgttc atgctgatcg tgtccgtcat cgtatacgtc gtggtgatcg
     5221 cgggcgtatt gttcgcggcg cgatcgcgga cagaggccgg tgttgctgcg ccgcccggtc
     5281 gcgagccggc gctgcgtcgc gccgttacga tcgcgaccgc tgtgaccgtg ttgattctct
     5341 ttgccgacct cttttacgac tttggcgtgg gacgggccgt ggccgcgccg cgcgacgccg
     5401 gcaatgcgct gcgtatcgac gtcgtcggac atcagtggtg gtgggaagtc cagtatcagg
     5461 acacggcgcc gcagcggctg gttacaacgg cgaacgagat ccacgtgccg atacaccggc
     5521 cggtgctgct caacctgtca tcgaccgatg tgatccacag cttctggatt cccaatctga
     5581 acggcaagaa ggacctcgtt cccggccatc acaacgatgc atggttccag gtcgacacga
     5641 ccggcgtgta ccgcggccag tgcgcggagt tctgcggatt ggagcacgcg aagatggcga
     5701 tcatcatcat tgcggagacg ccggagcaat atcaggcgtg gtacaacgcg cagctcaagg
     5761 cgccgccgcc acctgtcgat tcgcttcggt tggcaggcca gcaggttttc ctgtccgcgc
     5821 cctgcgtgat gtgccatgca atcggcggaa caccagccgg tgcgaccgcc ggcccggatc
     5881 tcacccacat cggaagccga atgacgctcg cggccggcgt actacccaac accgcttcca
     5941 atctcgagtc atggatcgcc gatccgcagc acatcaagcc cggcgcgaac atgcccgcga
     6001 ctcatctttc acgcgccgat atccacgccg tgacggccta cctggagggc ctcaagtgag
     6061 cgcggcgccg atgcctgtag ctgcgccgcc gactcccctc agtgcggatc ccgaggcgat
     6121 ggccgagctc gagcgaagct ggcgcagtag cgacacgggg ctgtggggct ggttgactac
     6181 gaccgacaac aagcgcatcg cgaaacgcta tatcatcacg gcattcgtga tgttcctgct
     6241 gggcggcatc gacgcggcga tgatgcgcct gcagctgtcg cgtcccgaga atcacatact
     6301 tggaccggat ctgtacaacc agttcttctc gacgcacggc accacgatga tgtttctgtt
     6361 cgcggttccg atgatgaccg cgatgggact gtatttcgtt ccgctcatgg tgggatctcg
     6421 cgaagtcgca tttccgcgcc tgaacgcgtt cgggtactac acgtatctga tcggctgtgt
     6481 tttcctgtat gtcgaattcc tgatgaacac cggaatcgac gtcggctggt tcgcatacgt
     6541 gccactcgcc ggtccgcaat tctccgccgg caagcgcgcg gacgtctggg cgcagaccgt
     6601 caccttcacc gagatcgccg gcatcatcgc cgcgattcag atcatcgtca cggcgttcaa
     6661 gcagcgcgcg cccggcatgt cgctgaatcg gataccgttg ttcgtctggt cgatggtggt
     6721 tgtttcgttc atgatcatct ttgcaatgcc gtgggtcgcg gttgcgagtc agtttctcgc
     6781 gatggatcgc gccatcgaca cgcacctctt caatcccgcc gaaggcggcg atgcgatact
     6841 gtggcagcac cttttctggt ttttcggaca tccggaggta tacatcatct tcatcccggg
     6901 cctcgggatg atatccagca tcgtcacgac gttcacgcgc aggcagatct tcggctatcc
     6961 ggcgatggtg ctctcgctcg tggcgaccgc agtgctcgcg ttcggtctct gggtgcacca
     7021 catgttcgca acgccgctgc cgcagctcgg tgagagcttc ttcaccgcag cgagcgtgac
     7081 gatcgcgatc ccctccggcg tgcagatatt ctgctggatc gcgacgatgt ggaacggccg
     7141 cgtgcgactc gcgacgccaa tgctgttcgt gctcggcttc ttcatcgtat tcatcatcgg
     7201 cgggcttacc ggggtgatgg tggcgtcggt gccgttcgat ctgcaggtgc acgataccta
     7261 cttcgtcgtt gcgcacctgc actacgtgct gctcggcggt gcagtgttcc cgttgttcgg
     7321 cgcattctat tactggtttc ccaagatcac cggccgaatg ctcagcgaga cgcttggcaa
     7381 gtggcagttc tggctgttcc tcatcggagt gaacgtgacg ttcttcccga tgcacatact
     7441 gggaatggaa ggtatgacgc ggcgtgtcta tacatatctc gccgcgacag gatggggacc
     7501 gctcaacacg cttgcgagca tcggcgcagt cataatcgcg agcagcgtga tagtgtttct
     7561 cgtcaacgtc atcatgtcct ggcgctccgg tgcgattgcc ggtaacaacc cgtgggactc
     7621 cgacacgctc gaatgggcga cgacgtcgcc gcccgggccg tgcagctttc ccgacatccc
     7681 ggtcgttacc agtcgtgacg gtctgtggga gcagcgagac gatgtgcccg tcatgactgg
     7741 attgcgaacc gaccgtcgcg aagttctggt gacgacgctg cacgacgcgg agccggagag
     7801 caggcacatg cttccgggcg acaccatctg gccgttcctg ctggcgcttg ccgtcggtgg
     7861 tgcatttatc ggggcggtgt atgcaccgat cggtctcgtg atcgggacga tcgtggcgct
     7921 tccaattgcg ctcggctggg cgtggcccaa cgagccgacg gagcctgaca tggtggacga
     7981 cgtacgatga agccggtacg agtagtcgcc gacgtttcgc agctgcccga tgtgacgttc
     8041 gggccgcgca gcacgacgtg gtggggcacg atcggcttca tggtgaccga aggactgacg
     8101 ctcgtcatct gcgcgtttgc gtatctctat ctgcgcaaga acttctatca ctacccgccg
     8161 gaaggaacgc ggctgccgag cctggtcgtt ccgatcattc aactgatcgt gatgctgatc
     8221 agtatcgtgc ccatggtctt cgcggcgcgg tacgcgcgga agctcgatgt caacggggtg
     8281 agagttgcgc tgctgatagc attcgtgatc aagctcggga ttctcgtcct gcgctggtac
     8341 gaatttccat cgttgaatac gcaatggaat agcgacgcat acggatccgc ggcgtggatc
     8401 gtcatgggat ttcacacaac gctgttgatc ctcgatattg ccgaagacgc gggcttcgcg
     8461 ctgattctgt ggaccggcca cgcgcgaccg cagacgatgt cggatgtggt ggatgacgtg
     8521 atctactggt acttcaccgt tgccgcatgg attccactat tcgtgctgct gttcctctat
     8581 ccgcggtgga cgtgatgcag gtcactcacg catcgtcgcg gtcgttgcag gaccgtcccg
     8641 cgcacgccgg cgcgctctgg ttcggctttc tgtgcgggcc actcgcggcg ttgagcaatg
     8701 aggcgatcga gtacgtgctc gtcgcctggt cctgcggccg gttcgacagc gtgtcgcgca
     8761 tcctgctgca tgtcgtgcct gcagcgctca tcgtgctctg cataattgca gcgctggtgg
     8821 gctggggcat cgccagagcg gcgggcgggg aggaaagcgg caccgcggag gatcaccgaa
     8881 tgcacgccgc ccgtagcaat cgcgcattca tgggacttgt cgccgtcggg ctcagcgcgc
     8941 tgggggcgct cgtgatactg tcgcaatgga ttccggtgct gtacctgaac ccgtgcgcca
     9001 tggcgtgaaa gcggggacgg agtggggacg gactccgcgt gaattcgcta agtgcaagcg
     9061 ggaccgggga cggagcaggg acggagtagg gacggagtgg agtccgtccc cactccgtcc
     9121 ccactccgtc cccactttcg cccttacaat ctgggtagcg tcacgccgga ctggccctga
     9181 tacttgccct tcttgtcctt gtacgacgtt atggggggct cctccccccg gaagaacatc
     9241 acctgcgcga ttccctcgtt cgcgtagatg cgggccggca gcggggtggt gttggagatt
     9301 tccagagtca cgaagccctc ccattccggc tcgaacggtg tcacatttgt gataatcccg
     9361 cagcgcgcgt aggtcgattt cccgacacag agcgtcacca cgtcgcgcgg gatgcggaag
     9421 tactcgacgg agcacgccag cgcgaaggag ttggccggga cgatgcagac atcaccctcg
     9481 aactccacga acgacttggg atcgaactgc ttgggatcca cgatcgagtt gagcacgttg
     9541 gtaaag
//
LOCUS       DATIMD010000222         3540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_948510, whole genome shotgun sequence.
ACCESSION   DATIMD010000222 DATIMD010000000
VERSION     DATIMD010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3540
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_948510"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..245
                     /locus_tag="VLI40_05105"
     CDS             <1..245
                     /locus_tag="VLI40_05105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96585.1"
                     /translation="NRQWLDLLARSGTTLFVSLAPDALGAQQRGDLRNALALAATRQP
                     LAEPLDWQRTVYPQDWSFRSAERSYDWVSADGVGLP"
     gene            complement(298..1392)
                     /locus_tag="VLI40_05110"
     CDS             complement(298..1392)
                     /locus_tag="VLI40_05110"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96586.1"
                     /translation="MLEQIIAAAGRKALIIGSVAILATVASAVLKLTTINQIVIFVTT
                     AIALASLASVVGVATEQLGRRLGPGATGVVQSALGNLPELFISIFALRAGLVIVVQTA
                     LIGSILANSLLVLGLAFVVGGVRHGTLRFSAGTTRMTAMLLVLSVASLAIPTLATEPG
                     APDFGHAGNLSIVVAIVLLLVFVCSIPMAIRGSIGPSQEHYGAQKPHWTLSASIVVLG
                     LAGFGAALVSDWFVTALTPAMASLGLSEEFVGLVIVAIAGNAVENVVGITAAARNEAD
                     LAVSLILNSSLQVALLLIPVLVLISTVLGGPMLTLVVPTLLIAALGLAAILGAMIIFD
                     GESNYVEGAALIGLYFIIAASVWFGPPIAG"
     gene            1641..2306
                     /locus_tag="VLI40_05115"
     CDS             1641..2306
                     /locus_tag="VLI40_05115"
                     /inference="COORDINATES: protein motif:HMM:NF015658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF305 domain-containing protein"
                     /protein_id="HSU96587.1"
                     /translation="MAASIGASAQLSAQGTSQGTSQSASQSPPQSSAVAPHDYVQADV
                     DFVQGMIVHHAQAVVMSDWAATHGARPNLLTLCKRIALSQRDEITMMQHWLEDRHLAT
                     PDPLHMLHPSNGPIHDRSGMNMPGMDMGDHMMMMTGMLTPAEMRQLDSARGPTFDHLY
                     LTGMIKHHQGALDMVAKLFATPGAGQQPELFSFATDVDAGQRAEMARMEAMLNTLTPS
                     QTR"
     gene            2303..>3540
                     /locus_tag="VLI40_05120"
     CDS             2303..>3540
                     /locus_tag="VLI40_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96588.1"
                     /translation="MTQKHASFHAPALLRTLFYAAASLALAIPAHAQSNTNDPRVGLK
                     PGLYDAGVASKGLSLVAHRNKPDVFKPNAPGGLTYANSDMAFGGHYLYQGNFSGFQIW
                     DIANPLQPKITEAYACFTEQGDVSIYGHLLFVSAENTGNRLDCGSQGIKDSVSKERML
                     GIRIFDIADPMHPKQVADVQTCRGSHTHTLVPDPIDKTVVYVYVSGLARVRSSSEMPS
                     CENGGINDPNSAQFRLEVIRVPLAHPEQSKIVSIARIFNDLTAPPTHGVAYADTANGA
                     AVKAARGFLGRLGLPATATAADSDRAAQLLVEIQEHRDDTARTRGAIDSLETMGVHVR
                     GMMGGGQARGGPSQCHDITVYPSVGLAAGACSGYGLLLDIKDPTHPVRIQAVADSNFS
                     FWHSATFNNDATSLLYTDEWG"
BASE COUNT          735 a         1172 c         1017 g          616 t
ORIGIN      
        1 tcaatcgtca gtggctcgat ctgctcgccc ggagcggcac cacgctgttc gtctctctcg
       61 cgccagacgc attaggcgcc cagcagcgtg gagacctgcg gaatgcgctg gccctcgctg
      121 cgacgcgcca gccgctagcc gagccgctcg actggcagcg taccgtgtac ccgcaggact
      181 ggagcttcag gagcgccgaa cgcagttacg actgggtaag tgccgatggc gtgggccttc
      241 catgatcaca ggcaatgatc agccgacccg cagtgccggc ctctccgccg gcgcttccta
      301 tcccgcaatc ggcggcccga accacacgct cgccgcaatt atgaaataca acccgatcaa
      361 cgcggcgcct tcgacatagt tcgattcgcc gtcgaagatg atcattgcac ccaggatcgc
      421 ggccagaccg agcgcggcga tgagcagcgt cgggacgacc agcgtgagca tcgggccgcc
      481 aagcaccgtg ctgatgagca ccagtacggg gatgagcagc agcgccacct gaaggctgct
      541 gttcaggatc aggctcaccg cgagatcggc ctcgttccgc gccgccgccg taatgccaac
      601 cacgttctca accgcattgc ccgcaattgc cacgatgacc agaccgacga attcctccga
      661 gagccccagg ctcgccattg ccggcgtcag cgcggtgaca aaccagtcgg aaacaagtgc
      721 cgctccaaag ccggccaggc caagaacgac aatcgaggca ctcagcgtcc aatggggctt
      781 ctgggcgcca taatgttctt gtgatggccc gatactgccg cgaattgcca tcgggatact
      841 gcagacgaag acgaggagca acacgatcgc cacaacgatg ctcaggttgc cggcgtggcc
      901 aaaatcaggg gcgccgggtt cggtcgccag agtgggaatc gccagcgagg cgaccgagag
      961 taccagcagc atcgcggtca tccgggtcgt gccggcgctg aagcgcagcg ttccatgcct
     1021 cacgccgcca accacgaacg ccaacccaag cacgagcagg ctgttggcga gaatggagcc
     1081 gatcagcgca gtctgtacga ctatcacgag ccccgcccgt agcgcgaaga tgctgatgaa
     1141 cagctccgga agattcccga gcgccgactg gaccactcca gtcgctcccg gtccgagccg
     1201 tctcccgagc tgctccgttg ccacgcccac caccgacgcc aggctcgcga gcgcgatggc
     1261 cgtcgtgacg aagatgacga tctgatttat ggtggtgagc ttgaggacag cgctggcaac
     1321 agtcgccagg atcgccaccg acccgatgat gagcgccttc cggccagcgg cggcgatgat
     1381 ttgttcaagc atgagttacc ggagtctggc gtctattcgt cgcgatgtca aaaatgcacg
     1441 ttggtacgcg accgcacggc gatgcgccgg tcactactta cgtactccaa cgactcttaa
     1501 gtatctggcg tacatttgaa taggtggcca tacttctcat ctggccgtcg cttttgtcca
     1561 gactccggtt tcccgattcg gtgatgtcca aaccacgatg taggcacgtt gccgcgtcat
     1621 cattgagtgc tctcgctctg atggcggctt ccattggcgc ttccgcacag ttgtccgcac
     1681 aaggcacttc acaaggcact tcacaaagcg cttcgcaaag tcccccgcag agcagcgccg
     1741 tagctccgca cgattacgtc caggcggacg tcgacttcgt acagggcatg atcgtccacc
     1801 acgcacaggc tgtggtgatg tccgactggg cagccaccca cggcgcgcga cccaatctcc
     1861 ttaccctgtg caaacgcatc gcactgtcgc agcgcgacga gatcacgatg atgcagcact
     1921 ggctggaaga ccgtcatcta gccaccccgg atcccctcca catgcttcat ccgagcaacg
     1981 gtccgattca cgaccggagt ggaatgaaca tgccgggaat ggatatgggt gaccatatga
     2041 tgatgatgac cggaatgctc acgcccgcgg agatgcgcca gctcgattcg gctcgcggcc
     2101 cgactttcga tcacctgtac ctcaccggaa tgatcaagca tcaccaaggc gctctcgaca
     2161 tggtcgccaa gctcttcgcc actccaggcg cggggcaaca gccggagctt ttcagcttcg
     2221 caaccgatgt cgatgcgggc cagcgcgccg agatggcgcg catggaggcc atgttgaaca
     2281 cgctcacccc gagtcaaacc agatgacaca gaagcacgca tcgtttcacg cgccagcact
     2341 gctgcggacg ctgttttacg ccgccgcgtc gctcgcgctg gcgataccag cgcacgccca
     2401 atccaataca aatgacccgc gcgtcggtct caagccggga ctgtacgacg ccggcgtcgc
     2461 gtccaagggt ctctcgctcg tcgcgcatcg caacaagcct gacgtattca agcccaacgc
     2521 accgggcgga ctgacctacg cgaactccga catggcgttc ggtggccact acctgtacca
     2581 gggcaacttc agcggcttcc agatctggga catcgccaat ccgctccagc ccaaaatcac
     2641 cgaggcctac gcctgcttca ccgaacaggg tgacgtttcc atctacggcc acctcctctt
     2701 cgtctcagcc gagaacactg gaaaccggct cgactgcggc agccaaggga tcaaggacag
     2761 cgtcagcaag gagcggatgc tcggcattcg catcttcgac atcgctgatc caatgcatcc
     2821 aaagcaggtt gccgacgttc agacctgccg cggctcacac acgcacactc tcgtaccgga
     2881 tccgatcgac aagaccgtcg tttacgtgta cgtatccgga ctcgcgcgcg tgcggtcgag
     2941 cagtgagatg ccgagctgcg agaatggcgg catcaacgat ccgaacagtg cacagttccg
     3001 tctcgaagtg attcgagttc cactcgcgca tccggagcag tcgaagatcg tcagcatcgc
     3061 gcgcatattc aacgacctca ccgctcctcc gacgcatggc gttgcatacg ctgacactgc
     3121 caacggcgca gcggtaaagg cagcgcgtgg atttctcggg cggttgggac ttccggcaac
     3181 agcaactgca gccgattcgg atcgcgccgc acagctgctc gtcgagattc aggagcatcg
     3241 cgacgacacc gcacgcactc gcggtgcgat cgactcgctg gagacgatgg gtgtacatgt
     3301 gcgtgggatg atgggcggcg gccaggcgcg tggcggcccg tcacagtgcc atgacatcac
     3361 cgtgtatccg agcgtcggac tcgctgccgg tgcatgctcc ggctacggac tcctgctcga
     3421 catcaaggat ccaacgcacc cggtccgcat acaggctgtt gcagattcca acttctcgtt
     3481 ctggcattcc gcgacattca acaacgacgc cacgagcctg ctctacaccg acgagtgggg
//
LOCUS       DATIMD010000223         4056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_662669, whole genome shotgun sequence.
ACCESSION   DATIMD010000223 DATIMD010000000
VERSION     DATIMD010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4056
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_662669"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..1163)
                     /locus_tag="VLI40_05125"
     CDS             complement(3..1163)
                     /locus_tag="VLI40_05125"
                     /inference="COORDINATES: protein motif:HMM:NF022077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HSU96589.1"
                     /translation="MATAEPNIELDVDKVNSALGEVHYPGMTRDLVSFGMVKHVSICG
                     TQVKVQLALRTSDESIPERLGTAVRDRLSALGATLVAVEIVKPDPPSKPIPHSPNAGQ
                     ARAGVPDPWADRVRLSNVRDIIAVGAGKGGVGKSTVAVSLALALVRAGFVVGLLDADI
                     YGPSVPILLGIEDGSKQVRVTADKHIVPVDVHGLTLISFGFFLGEGSPAIWRGPMVSK
                     AVKQFARGVEWPQLDVLIVDLPPGTGDIPLSLVQAVEVSGAVVVTQPQRLAGVEAQKA
                     GDMFAQLDVPVLGVVENMSGAFGSGGGSVVAAALGVPLLGTVPFDAEVVGEGDAGTPT
                     VITRSDSEFAKSFDAIAHKVVNALGWQLASGEKEGEAVSTAVSTAVSAALTE"
     gene            1198..2460
                     /locus_tag="VLI40_05130"
     CDS             1198..2460
                     /locus_tag="VLI40_05130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96590.1"
                     /translation="MTDVSGRSVMPEHVVTAGARARILHETLATQFPASLFRFDERMA
                     DGYYSDRYFVLTARTISHAGLDPVVTMQLFAKRKGILAGVYEALRMLQTQLAINPRTG
                     SRYDFDELTIDTLVDGDVVLPWEPVMHITGPYLAFAHLETDYLGVIARRTLIATNVRR
                     VIDAANGKPVIFMGARHDDWRVQTADGFAAKVGGIASVSTDANGAWWGGGGVGTMPHS
                     MIASFGGDVVRATLQFARYCREAALKIDVVSLTDYHNDVIGDSLAVARAMRDEFGDGA
                     LWGVRIDTSEKLVDKSLEAQAMRFPERRLNGVCPELVVLLRSALDAEGFDYVRIGVSG
                     GFHVRKIERFESEHVPVDFYGVGSSLLGHNDGDADGLANNFDFTADVVRLDGSAECKV
                     GREERGNASFIRLDHELLKRLDAKATGR"
     gene            2533..3129
                     /gene="pnuC"
                     /locus_tag="VLI40_05135"
     CDS             2533..3129
                     /gene="pnuC"
                     /locus_tag="VLI40_05135"
                     /inference="COORDINATES: protein motif:HMM:TIGR01528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015663 - nicotinamide mononucleotide
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015890 - nicotinamide mononucleotide
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HSU96591.1"
                     /translation="MAVCLWLTAHGSSCLEAVAVVFGIVSVYLSTQENIWSWPTALVN
                     VALFSALFLRSGLYSDTGLQVVYFVLSLYGWYEWLYGGAGHTAITVSRTSTKTWITLG
                     GIGVVAWALLGTITSRLPGTALPYVDAATTTVSLLAQWMMTRKLIENWLIWIAVDVVY
                     VGMFIYKGLYLTAFNYGIYLALAALGYIAWKRSLATAA"
     gene            3099..3638
                     /locus_tag="VLI40_05140"
     CDS             3099..3638
                     /locus_tag="VLI40_05140"
                     /inference="COORDINATES: protein motif:HMM:NF024911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU96592.1"
                     /translation="MEALARDGRLIRVVLTGSECTGKSMLARELADHYGAELVPEFLR
                     DFAEQKGSPLELADADAIARGQMALEDEHASRARGLLIQDTDLLSSVVYNGHYYGECP
                     AWIADAARERRPDLYLLLEIDVPWVPDGVRDRETRREEIQQLFRDAVAASGSSFVVIQ
                     GTWEQRSELARAAIDRLLA"
     gene            complement(3678..>4056)
                     /locus_tag="VLI40_05145"
     CDS             complement(3678..>4056)
                     /locus_tag="VLI40_05145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSU96593.1"
                     /translation="RIREYTDSSGDVPVTYHNVEPLLTPRFLSFGRAQFALTPSIDLA
                     VQGRYQSVSFLENTSDRRYVLPESADLDASIGWRIGQTELLVRGNNLTNSKKYGSGYA
                     SDGVSYYFVLPPRNVFVTLKVGI"
BASE COUNT          735 a         1210 c         1301 g          810 t
ORIGIN      
        1 gctcactcgg taagtgccgc gcttactgcc gtgcttactg ccgtgcttac tgcctcgcct
       61 tctttctcgc cgctcgcgag ctgccaaccc agcgcgttga ccaccttgtg tgcgatcgcg
      121 tcgaagcttt tcgcgaattc actgtcgctt cgcgtgatga ccgtcggcgt gccagcgtca
      181 ccttcgccta cgacctccgc atcgaacggt acagtgccaa gcaatggaac gccgagcgcg
      241 gccgcgacaa cgctgccacc gccgctgcca aatgcgccgg acatgttctc cacgacaccg
      301 agtaccggca catcgagctg cgcgaacatg tcgcccgcct tctgcgcttc gacacctgcg
      361 agccgctgcg gctgtgttac cacgaccgcg ccggaaactt cgacggcctg cacgagactg
      421 agcgggatgt cgcccgtgcc tggtggcagg tcgacaatga gcacatccag ctgcggccat
      481 tccaccccgc gcgcgaactg cttcaccgcc ttcgatacca tcgggccacg ccagatcgcc
      541 ggtgatccct cgccgaggaa gaagccgaag ctgatgagtg tgaggccatg cacgtcgacc
      601 ggcacgatgt gcttgtccgc ggtgacgcga acctgtttcg agccatcttc gattccaagc
      661 aggatgggaa cgcttggtcc gtatatgtcg gcgtcgagca gaccgacgac gaatccggcg
      721 cgaacgagcg cgagcgcaag actgacggcg accgtgctct ttccgacgcc gccctttcca
      781 gcgccgacgg cgatgatgtc ccggacgttg ctcaacctca cgcggtccgc ccacgggtcc
      841 ggtactccgg cgcgcgcctg gccggcgttc ggagaatgcg gaatcggctt gctcggcgga
      901 tccggcttta cgatctcgac cgcgacgagt gtcgcgccga gcgcggagag acgatcgcgc
      961 accgcggtac cgagccgctc cgggatggac tcatccgagg tacggagcgc cagttgaacc
     1021 ttgacctggg ttccgcatat cgagacgtgc tttaccatgc cgaacgacac gagatcgcgc
     1081 gtcattccgg ggtagtgaac ttctccgagc gcgctgttta ccttatcaac gtcgagctcg
     1141 atatttggct cagctgttgc catgacagga cgctagcttg actccatgta gtgaggtgtg
     1201 acggatgtct cagggagaag cgtgatgccg gagcatgtag ttaccgctgg agcgcgggcc
     1261 aggattctgc acgaaacgct tgcgacgcag tttccggcgt cgctgtttcg gttcgatgag
     1321 cgcatggcgg acggatacta ctccgaccgc tatttcgttc tgacggccag aaccatatcg
     1381 cacgccgggc tcgatccagt cgtcaccatg cagctgtttg cgaagcgaaa gggcattctg
     1441 gcaggtgtat acgaagcgct tcgaatgctg cagactcagc tcgcgatcaa tccgcgtacg
     1501 ggatctcgtt acgacttcga cgaactgact atcgatacgc tcgtggacgg cgacgtggtc
     1561 ctcccgtggg agccggtcat gcacatcacg gggccctatc ttgcgttcgc gcatctcgag
     1621 accgattacc tcggcgtcat cgcgcgtcgc accctgatcg caaccaacgt acgacgagtc
     1681 atcgacgctg ccaacgggaa gcctgtgatc ttcatgggtg cccggcatga tgactggcgc
     1741 gtacagactg cggatgggtt cgccgcaaag gtcggcggga tcgccagtgt ctctacagat
     1801 gcgaacggcg catggtgggg cggtggtggc gttggcacga tgccgcactc gatgatcgcg
     1861 tcgttcggcg gcgacgtcgt gcgcgcgacg ctccagtttg cgcggtactg ccgcgaagcg
     1921 gcactgaaga tcgatgtcgt gagccttacg gactatcaca acgatgtgat cggcgactcg
     1981 ctggccgttg cgcgtgccat gcgtgatgag tttggcgacg gtgcgctatg gggtgtgcgg
     2041 atcgatacga gtgagaaact cgtcgataaa tcactcgagg cgcaggcgat gcgtttcccg
     2101 gaacgacgac tcaacggggt gtgccccgag ctggtcgtgc tgctgcgatc ggcgctcgat
     2161 gcggaagggt tcgactacgt caggataggc gtgtccggcg gattccacgt gcgaaagatc
     2221 gagcgcttcg agtccgagca tgttccggtg gatttttacg gcgtgggcag ctcgctcctc
     2281 ggccacaatg acggcgacgc tgacgggctc gcgaacaact tcgacttcac cgctgacgtg
     2341 gttcggctgg acggcagcgc cgagtgcaag gtggggaggg aggagcgcgg caacgcgagc
     2401 ttcatacggc tggatcatga gctgctgaag cggctcgacg ccaaggctac cggacgatga
     2461 aggcccggtc agcttgcacg tagtcaccca gcgtcgcaga ttgcgcgcga tgatacccat
     2521 cgaggttgga tagtggcagt ctgcctgtgg ctcacagcgc acggttccag ttgcctggag
     2581 gcagtcgccg tcgttttcgg gatcgtaagc gtctatctga gcacacagga gaatatctgg
     2641 agctggccga ccgcgctcgt caacgtggcg ctgttctcgg ctctctttct gcgatcggga
     2701 ctgtattccg ataccgggct gcaggtagtc tatttcgttc tgtcgctgta tggctggtac
     2761 gagtggctgt acggtggcgc cggccacacg gcgatcaccg tatcgcgtac gtcaacaaag
     2821 acgtggatta cgctcggcgg tatcggcgtg gttgcgtggg cattgctcgg aaccatcacg
     2881 tcgcgccttc ccggaacagc gctgccgtac gtcgacgcag cgacgacgac ggtaagtctg
     2941 ctcgcccagt ggatgatgac tcgcaagctg atcgagaact ggttgatctg gattgcggtc
     3001 gacgtcgttt acgtcggcat gttcatctac aaggggctgt atctgacagc cttcaactac
     3061 ggcatctatc tggctctggc ggcactgggc tacatcgcat ggaagcgctc gctcgcgacg
     3121 gccgcctgat ccgcgtcgtg ctgacggggt cggaatgtac ggggaagtcg atgctcgccc
     3181 gtgagcttgc cgatcattac ggagcggagc tggtgccgga gtttctgcgc gactttgcgg
     3241 aacagaaggg atcgccgctc gagctcgccg atgccgacgc gatcgcgcgc ggtcagatgg
     3301 ctcttgaaga cgaacacgca tcgcgtgcgc gcggcctgct gattcaggat accgatctgc
     3361 tgagctccgt ggtgtacaat ggtcactatt acggagaatg cccggcgtgg attgcggatg
     3421 cggcgcgcga gcgaagaccg gatctgtacc tgctgctgga gatcgatgtg ccgtgggttc
     3481 cggacggcgt gcgcgaccgg gaaacgcgcc gcgaggaaat acagcaactg tttcgcgatg
     3541 cggtcgccgc gtccggatca tcgttcgtgg tgatacaagg gacgtgggaa cagcgatcgg
     3601 agctcgctcg cgccgctatc gaccggttgc tcgcatagcg cccgattaca ccgcgctacg
     3661 cgagcagtca gccctgttca gataccgact ttgagagtga cgaacacgtt gcgcggcgga
     3721 agcacgaagt agtacgacac gccgtcgctc gcatatccgc ttccgtactt cttgctgttc
     3781 gtgagattgt taccgcggac gagcagctcc gtctgaccga ttcgccaccc gatcgatgca
     3841 tccaggtcgg cggactcggg aaggacatat cgccgatcgc tggtgttctc gaggaatgat
     3901 acgctctggt atctaccctg taccgccaga tcgatcgacg gtgtgagcgc gaactgcgcg
     3961 cgcccgaaac tgaggaagcg cggcgtgagc aacggctcga cgttgtgata tgtcaccggt
     4021 acgtcacccg acgaatccgt gtattcgcga atccgg
//
LOCUS       DATIMD010000224         4460 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_663020, whole genome shotgun sequence.
ACCESSION   DATIMD010000224 DATIMD010000000
VERSION     DATIMD010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4460
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_663020"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..1034)
                     /locus_tag="VLI40_05150"
     CDS             complement(189..1034)
                     /locus_tag="VLI40_05150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96594.1"
                     /translation="MKMLRRAACTIAALSLSGTQLTAQIPLHARASNALANVAIGGVT
                     GALSAALHRRSVWTGLRRGSAGGLIIAGAKQVVDLRFTTSGFVARELSGVGISLVAAG
                     GDSSTRYLIPLGPATIVILPNRRLDWRLNVAEAVSTIGLMISPNTRLDLSRSLSAGTP
                     VYRDRRSHFGEPGEVELAGAEGLGTIRLAPEALGPDQSVQNEVLSHETIHVLQEDFVN
                     DAIGLPIERELLQRTELGRRFARHLDIGLLIPGVVQIIDPAIPYRDRPWEREAYSLTG
                     RRLPE"
     gene            1124..1453
                     /locus_tag="VLI40_05155"
     CDS             1124..1453
                     /locus_tag="VLI40_05155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HSU96595.1"
                     /translation="MQSAAAVENRIFHALADPSRRAIFESLTRGEAAVKDLTARFDIS
                     QPAVSQHLAALKEAGLVNGRREGRCVYYRVEPRGMKPLIDWIAHYRAFWMEHVGRLER
                     LLEKMDE"
     gene            1450..1944
                     /locus_tag="VLI40_05160"
     CDS             1450..1944
                     /locus_tag="VLI40_05160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HSU96596.1"
                     /translation="MTSIDTTADTTADTTADTTARSQTESVSFEFDLHHSPEKVWRAL
                     TDPALLGEWLLPVLGLELVPGASFAFRAPPQPGWDGVVSCRLSEIEAYRKLSYTWVVG
                     DIDTVVTFALTPTTSGTRLSLVQSGFRADQKRNSGGARYGWKMMGARLIELLARIADA
                     AEPV"
     gene            2024..2416
                     /locus_tag="VLI40_05165"
     CDS             2024..2416
                     /locus_tag="VLI40_05165"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU96597.1"
                     /translation="MRIKWSTVYVDDQDRALQFYTDKLGFQKKADFSQGNYRWLTVTS
                     PEDADGTELILESNANPAGKAYQQALRGASRPAAQFLVDDVQAEHDRLVAKGVKFTMP
                     VTAVTGSVIAILDDTCGNLIQLVHLTWG"
     gene            2430..2822
                     /locus_tag="VLI40_05170"
     CDS             2430..2822
                     /locus_tag="VLI40_05170"
                     /inference="COORDINATES: protein motif:HMM:NF020397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HSU96598.1"
                     /translation="MKKGATTKDESPSQLIDARIRELSDWRGSTLARVRALIKKADPQ
                     VVEEWKWRGVPVWYHDGLICTGETYKSVVKLTFFKGASLGDPSRLFNSSLEGNTRRAI
                     DLHEGDEIDEKAFKALIRAAVALNGPSV"
     gene            complement(2869..3258)
                     /locus_tag="VLI40_05175"
     CDS             complement(2869..3258)
                     /locus_tag="VLI40_05175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96599.1"
                     /translation="MVALITVSAFMAPVSLRAQQTPAAANTAISTALQHSALAVNATE
                     LPQVRQHLKHVLNCLEGKQGAQYDASGGDPCKGSGALDATPAGSANRVRITKAISLLT
                     VGVTFQDYKPAHYVAQAVQAVLQEIGS"
     gene            complement(3454..>4460)
                     /locus_tag="VLI40_05180"
     CDS             complement(3454..>4460)
                     /locus_tag="VLI40_05180"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSU96600.1"
                     /translation="AERAVGGKYLDVTVNRDAAARYGLTGDDVQMALSAAVGGMDAGQ
                     VIEGRERYSVLVRYPRALRDNPAQVGDELVATPSGAQVALSELADIQVVKGPTLIKSE
                     NAYLNNIVYVDVEGRDIGSYVGDAKELLAEKLTLPPGYRLEWSGQYESLERANRKLKV
                     VVPITLAIIFGLLYFNFRSVTESAIVMLALPFALVGGVWLMWILHYNMSVAVAIGFIA
                     LAGVAAETGVIMLIYLDQAYNERATNGTLRNRADVDAAVEQGAVGRVRPKIMTVTAIM
                     AGLIPILWSQGTGADVMKRIAAPMVGGMLTSTILTLIVIPAIYSLWKEWEIHRHRKSG
                     "
BASE COUNT          918 a         1301 c         1356 g          885 t
ORIGIN      
        1 ctggcatatc gcgagatcaa agagaagtat ctagacacaa cgcatagaga ctttcagcaa
       61 tacctgctga atacactcgt cggtagcgag cgagtcggca gccgtttcaa tccaaaatga
      121 gtttgcggtg tcgcgccata gctcacttca tcgtttctcc tcgatcgtcc cggggcgacg
      181 tgatcgcttc attccggcag cctccgtccg gtgagagagt acgcctcccg ctcccacggc
      241 cgatccctgt acggaattgc agggtcgatt atctgtacaa cccccggtat tagcaatcca
      301 atgtccaggt ggcgcgcgaa gcgacggccg agctccgtgc gctgcagaag ttcgcgctcg
      361 atcggcagac cgatggcgtc attgacgaag tcctcttgca ggacatgaat cgtctcatgg
      421 gacaggactt cattctgcac actctggtcc ggcccaagtg cttcaggtgc gagccggatc
      481 gtcccgagtc cctcggcgcc ggccagctcg acctcgccgg gctcaccgaa gtgcgatcga
      541 cgatcgcgat ataccggagt tccggcgctc agcgatcgcg aaaggtccag gcgtgtattg
      601 ggagaaatca tcagaccgat ggtcgagacg gcttcggcga cgttgagacg ccagtccaga
      661 cggcggttgg gcagaatgac aattgtcgca ggccccaatg gaatcaggta tctggtcgat
      721 gaatctcctc ccgccgcaac gagcgagatt cccacgccgg aaagttctcg cgctacaaaa
      781 ccggaggtgg taaatcggag gtcgacaacc tgttttgcgc ccgcgatgat gagtccgccg
      841 gctgagccgc gtcgcaggcc tgtccatacc gacctgcgat gcagtgccgc cgagagtgcg
      901 ccggtgactc cgccaattgc aacgttcgcg agagcattgg aagcgcgcgc gtgcagcgga
      961 atctgcgccg tgagctgagt gccgctgagc gataatgcgg cgatggtgca agctgcccgg
     1021 cgtagcatct tcatctccgc caatatattg gctgaccgat tccatcgggt tgttcgctgc
     1081 cgtcgctctt gacaatcaat aagtatccgc ttatctattg ccaatgcaga gcgcagccgc
     1141 ggtcgagaac aggatcttcc acgcgctggc ggatcccagt cgccgagcga ttttcgagtc
     1201 gctgacgcgg ggcgaagcgg cggtgaagga tctgactgcg cgcttcgaca tctcgcagcc
     1261 ggcggtttcg cagcatcttg ccgcgttgaa ggaggcgggt ctggtgaatg gcaggcgcga
     1321 ggggcgttgt gtgtactatc gagtagagcc gcgcggaatg aagccgctca tcgactggat
     1381 cgcgcactat cgcgccttct ggatggagca tgtcggccgc cttgaacgac tgctggagaa
     1441 aatggacgaa tgacttccat cgatacaacg gccgatacga cagccgatac gacagccgat
     1501 acgacggcgc gatcgcaaac cgaatccgtt tcgttcgaat tcgatctgca tcattcgccg
     1561 gagaaggtgt ggcgtgcgct caccgatcca gcgctgctcg gggagtggct gctgcccgtt
     1621 ctcgggctcg agctcgtgcc gggtgcgtcg ttcgcgttca gggcaccgcc gcagcctggt
     1681 tgggacggcg tggtgagttg ccggctctca gaaatagaag cgtacaggaa actcagttac
     1741 acgtgggtcg tcggcgacat cgataccgtc gtgaccttcg cgctcacgcc tacgacgtcg
     1801 ggcacgcgcc tgtcgctcgt gcagtcgggc ttcagggcgg accagaagcg gaactccggc
     1861 ggcgcgcgtt acggatggaa gatgatgggc gcgaggctca tcgagctgct tgcgaggatt
     1921 gccgatgcgg ccgagccggt ttgaggtgag ttgtcggcgg aactgaagca gatgcaagca
     1981 gacggaagca gcatgaccag aacaccaaca cagtgaggaa gcgatgcgca tcaaatggag
     2041 caccgtgtac gttgacgatc aggacagggc gctgcagttc tacaccgaca agctgggctt
     2101 tcagaagaaa gccgatttct cacaggggaa ctaccgctgg ctgacggtta catcacccga
     2161 ggacgccgac ggaacggagc tcattctgga atccaacgcc aaccccgcgg gaaaagcgta
     2221 tcagcaggca ttgcgtggtg cgagtcgacc ggccgctcag tttctggtgg acgacgtgca
     2281 ggcggagcac gatcggctgg ttgcaaaggg tgtgaagttc acaatgccgg tcacggctgt
     2341 aaccggctcc gtcatcgcga tactggacga cacgtgcggc aacctgattc agctcgtgca
     2401 cctcacgtgg ggctagaggt catcacaaca tgaaaaaggg cgcgacgacc aaggacgaat
     2461 ctccttctca gctgatcgac gcgagaatca gggagctgag cgactggagg ggcagcacgc
     2521 tcgcgcgtgt acgcgcgctg atcaaaaaag ctgatccgca agtcgtcgag gaatggaagt
     2581 ggagaggcgt tccagtctgg tatcacgacg gcctgatctg caccggcgag acttacaaga
     2641 gcgtcgtgaa gctgactttc ttcaagggcg cttcgctcgg ggacccgtcg cggctgttca
     2701 actccagcct tgaagggaat acaaggcgtg cgatcgatct gcatgaaggt gatgagatcg
     2761 atgaaaaggc gttcaaggct ctcatacgcg ctgctgtggc gttgaacggg ccgtcggtgt
     2821 agcgggtcaa aaagtttcca ataccatttg cggctgctac ccgatctcct aactgccgat
     2881 ctcctgaagg acagcctgta cagcctgcgc gacatagtgg gctggcttgt agtcctgaaa
     2941 ggtcacccca acggtaagca ggctgatcgc cttcgtgatt cgcacccggt tcgctgagcc
     3001 ggctggtgtg gcatccagag ctccgcttcc cttgcaaggg tcgccaccac tcgcgtcgta
     3061 ctgcgctccc tgctttccct cgagacagtt gagcacgtgc ttcaggtgct gacgcacctg
     3121 ggggagttcg gttgcgttca ccgccagggc ggaatgctga agagcggtac tgatcgcagt
     3181 attggccgcg gcgggcgtct gctgcgcacg caagctgacg ggcgccatga aggcgctgac
     3241 agtgataagc gctaccacga acgcagagag accagggcag aatcgggaat tccggcgaat
     3301 cgggattttc attaccgtgc aggttggatg tgtaaggacc gaccttcggt gaagtccatt
     3361 acaactcaat cgctgcacaa gccgcgccag atctccgctc gtgggcagtt ccgatatcga
     3421 taggccaatg cgattggttc gcgggtgcaa ccattagcca gatttcctgt gacgatgtat
     3481 ctcccactcc ttccagaggg agtagatggc gggaatcacg atcagggtaa gaatcgtgga
     3541 tgtgagcatc ccgcctacca tgggtgccgc tatccgtttc atcacgtccg cgcctgttcc
     3601 ctgactccag agaatcggga tgagaccagc catgatcgcc gtcacggtca tgatcttggg
     3661 acgtacacgt ccgacggcgc cctgttctac tgcggcatcc acatcagccc tattgcgaag
     3721 cgtaccattc gtggctcgtt cgttatacgc ctgatccagg tatatgagca tgatcacccc
     3781 agtctcagca gcgacgccgg cgagcgcaat gaatccgatc gcgaccgcca cgctcatgtt
     3841 gtaatgcagg atccacatga gccacacgcc gcccacgagg gcgaatggca aggcgagcat
     3901 cacgatcgcg ctctcggtca cactccggaa gttgaagtag agcagtccga agatgattgc
     3961 gagcgtgatt ggcaccacaa ccttgagttt cctgttcgcc cgctcgagcg attcgtattg
     4021 tcccgaccac tcgagccggt accccggtgg tagcgtgagc ttctcggcaa gcagttcctt
     4081 cgcgtcaccg acataactgc cgatgtcacg tccctcgaca tcgacgtaca cgatgttgtt
     4141 gaggtatgcg ttctctgact tgatgagcgt cggccctttg acaacctgga tgtcggcaag
     4201 ctcactcaac gccacctggg caccggaggg cgtcgcgacc agctcatctc cgacctgtgc
     4261 tggattatcg cgcagcgcac gcggatagcg caccagcacg ctgtaccgtt cgcgaccttc
     4321 gatcacctgt cccgcatcca ttccgcccac agccgcgctc aatgccatct gtacgtcgtc
     4381 gcctgtgagt ccatagcgtg ctgctgcatc gcggttgaca gtgacgtcga gatactttcc
     4441 gcccaccgca cgttcggcga
//
LOCUS       DATIMD010000225         9303 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3548638, whole genome shotgun sequence.
ACCESSION   DATIMD010000225 DATIMD010000000
VERSION     DATIMD010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9303
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3548638"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2148
                     /locus_tag="VLI40_05185"
     CDS             <1..2148
                     /locus_tag="VLI40_05185"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU96601.1"
                     /translation="MPFVRGESLRARLASGTTLGVPEAVSILRDIARALAYAHAEHVV
                     HRDIKPENILLSGGAAVVTDFGIAKAIDVSRTQDGARTDALNFTLTRAGTSLGTPAYM
                     SPEQAAGDPRSDHRVDIYAWGLIAWELLARRHPFAGKPSVQAIVVAQMSETPPPLVTV
                     RSDVPTALSDLVQRCLQKDPDLRPASATEILASLDQMTTTGSGAAAARRVTTGRRRLG
                     TVAGIAGLVVVGAAFAWFVKGRAGAATIHHTADESLAVIPFASLSSDTSNAYLGEGIA
                     EEVANTLTQIPGLRLAGQASSARFAASNADPKEVGKSLNVAAILNGTVQRSGDRIRVS
                     AELANVSDGTVVWHETYERDAKDIFAVQDDIARAIAGQLQVTLAGTGRGAVHGTTDPT
                     AYDLYLRGMYLYRRRGPGITGAINAFDQATVRDSAFARAWAALSVALLVSPSYVATRS
                     GAVIPRALAAAERAVRLDPTLSDAHLALGYADAELFKWPDAEAELRRAIALDPGAVEP
                     RYRLAYALVNQCRDAEAIPVLQLAVARDPLYFMTALYLGRAEVAVGRTGEGFDELRRA
                     LALEPQSVSPPSAMASAFAQAGFPDSARFYAQRLLAMQPDVGRIGVAAFALARAGAPA
                     ETRAIIKRLEAGPTDQWERWTALALAYAGLRDTARTVDALQHAAAGDGDAFPEYGPHL
                     ACNMPSGAAIDAVRRRYHLEETRTPASVALMAR"
     gene            2145..4811
                     /locus_tag="VLI40_05190"
     CDS             2145..4811
                     /locus_tag="VLI40_05190"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU96602.1"
                     /translation="MTAIADRLTAALSDRYRIERELGAGGMATVYLAHDLKHDRDVAI
                     KVLHQDLGAALGAERFLTEIRTTARLQHPHILPLLDSGDADGLLYYVMPVVAGETLRA
                     RLTREQQLPISDSVRIAREVASALDYAHRQGVIHRDIKPENILLHDGQALVADFGIAL
                     AVQQAGGQRMTQTGLSLGTPQYMSPEQAMGEKSIDARTDIYALGAVTYEMLCGDPPFT
                     GSSVQAIVAKVMTERPTPLHTVRDTVPPNVEHAVLAALAKLPADRFATAAEFATALTS
                     TDTTYTPTRGRTPFRPMRIAMAGVPWALLAVAIAVAGWSLLRQRNPDAPVTRVAVALP
                     PGQEIQPQINGFSLDISRDGTRLAYVGQGPTDGSTQLWVRALSELDATPVPGTAGANS
                     VRWSADGRSVLFSQGKSARVISLDGGQSAPLAGATDGMWSAPGAVYSPDRRVIVRQNV
                     GGTLDTVLALDTGFTIGTLTVLPGERAALFSRLRNNASLQTGGYELAAVSFRTRQIHV
                     LGPGVFAQYLPPDHLLRVDVSGNASVAPFDAAALRITGPSIPVARIATGENTSRGLVV
                     YPQITASDNGTLVYLSGEIQRQRLTWLDARGLSSGHLDIDGNLWGLSLSPDGSHLAYS
                     KFHGEGEADFGTNVWVVDLTTGVQTQLTSTLMNMRPSWSPDGRYVLWARVGGNSRQSM
                     MERRADGSEPERTVLTTNTLGHSLGDGRWLPDHRTLVVSTYDDAGSRNIFSIVPGVDS
                     APRPVATTAANESSPVPSPDGSMMAYTSDESGIRELYVQSFPATGGHVAVSHGGASAG
                     RWSHDGRQLYYWDQRGKLMVATIRAHPALAIESVREIGGDVTLATGGGQSTGLFDVAP
                     DGRVLVAAQMPGSFNLILVRNWTAGLAQGTRP"
     gene            4808..4975
                     /locus_tag="VLI40_05195"
     CDS             4808..4975
                     /locus_tag="VLI40_05195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96603.1"
                     /translation="MSERFRAPSWIRSMFFDTGIPYDVNRDGTQFVLRMAPASTAAVL
                     VQNWPALLGAK"
     gene            4992..7400
                     /locus_tag="VLI40_05200"
     CDS             4992..7400
                     /locus_tag="VLI40_05200"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU96604.1"
                     /translation="MSVSQEQTHNVLERALADRYRIERELGGGGMSRVFLAREIAFDR
                     QVVIKIIAPELRQGLSADRFARELQFAARLQQANIVPVLSAGDADGTPYYTMPYVDGL
                     SLRARLERGPVPLGDALDIMRDIARALAYAHAQGIVHRDIKPENVLLSSGTAVVTDFG
                     IAKALSVSRTAETPRDATLTQTGTSLGTPAYMAPEQALGDSVDARTDLYSWGLVAYEI
                     LGGTHPFVAHVNAQRLVAAHLTEAPASLAALQPGLPPNIAALVMQCLAKDPADRPADA
                     NEVLARLSAAVTPGTHSAPTNIARSTALWKRRWFAAAAAIVLVVAAAAAMVLARRGTA
                     AAPVRTVVVVPFDNVGNPADAYFAEGVSDEIASQLARLPGLQVIGRDGVQRFRGSSES
                     PRDIARRMGAAWVLSGSVRWAHDAGSSNVNGTTRVRIVPALVNVSTGVQAWGDPFEEP
                     LTDVFKVQADIGERVASALSITLGGAARAELHRQDTNDPEARDAQLLGRYLLQQRGVT
                     NLRGAVTAFNRAIVRDSNYARAWAGLSEATVLLPQYNDTSESDTVVLARAEAAARRAV
                     AIDSTLPDVQLALARSQSAQFRFREALQSVNRAIAADPTSTLAFALKYEILTALGRVA
                     EADSTSRRAVELDGLSALALNNRAISFWAANRMDSAVHYSERAAAVDPSNAQWKRTLG
                     TMYASAGRLKDARMTCSNGMMGSPGSCAAVLGFIAGDTTDRAAVIRGLDESARRSGAA
                     GAPTFTAWVYARLGMPDSVFSRLAVAVQRHDDVFAHLITSTAFRPYELDPRWDAIVGT
                     VRRR"
     gene            7464..7694
                     /locus_tag="VLI40_05205"
     CDS             7464..7694
                     /locus_tag="VLI40_05205"
                     /inference="COORDINATES: protein motif:HMM:NF013561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HSU96605.1"
                     /translation="MKRTTIFLDDSTLRRLQGLAQRKHVSAATLVREAVARYLDAPDP
                     IKKLPSVAGSFASGESDTSERTDELLWSDPHA"
     gene            7691..8104
                     /locus_tag="VLI40_05210"
     CDS             7691..8104
                     /locus_tag="VLI40_05210"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HSU96606.1"
                     /translation="MIVIADTGSLYALVDRSDVWHDRVITWWSKRARNVVVPSVVLPE
                     VTYLLQTRIGTAAEQAFVQAAADGEFMIEPLEPDDIARAAELLHEYADLPLGFVDAAV
                     VATAERLGTREILTTDRRHFGVVKPLHTRTLVLVP"
     gene            8146..>9303
                     /locus_tag="VLI40_05215"
     CDS             8146..>9303
                     /locus_tag="VLI40_05215"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSU96607.1"
                     /translation="MTGPASDQPATRLQPSLHGRYRIERELGAGGMATVYLAHDIRHD
                     RDVAIKVLKPDISESLGRERFVREIRLAARLNHPHILPLYDSGDADGFLYFVMPVMQG
                     QTLRDRMRDEGQLPVDAAVRLVQEVADALDYAHRHDVVHRDIKPENILLHEGHALVAD
                     FGIGKAIIAAAASGVATLTQVGVTVGTPAYMSPEQAAGDEIDGRSDLFALGCVLYEML
                     TGEPAFTGSTVQAVIAKRFHYSPPSASAIRPTVPAGVSHTIERLLERDPTARIPTGAL
                     VIAALREQDTSPAVQAPRRAEQSVAVLPFANMSASADDDYFADGITEEIINLLAQLNG
                     LRVAARTSCFAFKGKNEDLRIVGEKLGVQHVLEGSVRKAGPHVRITAQLINA"
BASE COUNT         1638 a         2991 c         3018 g         1656 t
ORIGIN      
        1 atgccgttcg tgcgcggcga gtcgctacgc gcgcgtctgg caagtggaac gacgctcggt
       61 gtaccagaag cggtgagtat cctgcgtgat atcgcacgcg cgctggcata tgcgcatgca
      121 gagcacgtgg tgcatcgcga catcaaaccc gagaatatcc tgctctccgg cggtgccgcg
      181 gtcgtcaccg atttcggaat tgcaaaggcg atcgacgtgt cgcgtacaca ggatggcgct
      241 cgcaccgacg cgctcaactt cacgcttacg cgggccggca cgtcgctggg cacaccggcc
      301 tacatgtcgc cggagcaggc ggcgggagat ccgcgcagcg atcaccgcgt cgatatctac
      361 gcgtggggtc tcattgcgtg ggagctgctc gcgcgaagac acccgttcgc aggcaagcct
      421 tcggttcagg cgatcgtagt cgcgcagatg tcggaaaccc cgccgccgct cgtgaccgtg
      481 cgcagcgatg tgccgacggc actgagcgat ctcgtgcagc gctgcctcca gaaagatccg
      541 gatctccgtc ctgcttccgc gactgagatt ctcgcgtcgc tggatcagat gacgaccacc
      601 ggatccggtg cagctgcagc gagacgagtg acgacaggtc gtcggcgtct cggtactgtt
      661 gcgggtatcg ccggactcgt cgtcgtgggg gcggcgtttg cctggtttgt gaaaggccgc
      721 gctggcgcgg cgaccattca ccacacggcc gacgagtcgc ttgccgtaat tcccttcgcc
      781 tcgctgtcca gcgacacgtc caacgcatat ctcggcgagg ggatcgccga ggaggtcgcc
      841 aacacactga cacagatccc ggggctccgt ctcgctggtc aggcgtcatc ggcgcgattc
      901 gctgcctcga atgcggatcc gaaggaagtt ggcaagtcgc tgaatgtcgc cgccattctc
      961 aacggcaccg tgcagcgctc aggcgacagg attcgcgttt ccgcggagct cgcgaacgtg
     1021 agcgacggca cggttgtttg gcacgagacc tatgagcgag atgcgaaaga catcttcgct
     1081 gttcaggacg acatcgctcg cgcgattgca ggacagcttc aggtgacact cgctggaacc
     1141 ggacgcggag ctgtgcatgg aacgaccgac ccaaccgcgt acgatctcta tctccgggga
     1201 atgtatctgt accggcgccg agggccggga atcaccggag cgatcaacgc gttcgatcag
     1261 gcaacggtcc gcgacagcgc gttcgcgaga gcgtgggccg ctctctccgt tgcgttgctg
     1321 gtgtccccgt cctatgtggc gacacgcagt ggcgccgtga tcccgcgcgc gcttgccgcg
     1381 gctgagcgag cggtgcggct ggatcccaca ctatcagacg cgcacctggc cctgggttac
     1441 gccgatgcag agctcttcaa atggcccgat gcggaagcgg agcttcgccg cgcgatcgcg
     1501 ctcgaccccg gcgcggtcga gccgcgctat cggctcgctt acgcgttggt gaatcagtgt
     1561 cgcgacgccg aagcgatccc cgtactccag cttgcagtcg cacgcgatcc gctctacttc
     1621 atgaccgcac tgtacctggg gcgcgcggaa gttgcggttg gccgcacggg tgaagggttc
     1681 gatgagttgc ggcgcgcgct ggcgctggaa ccgcagagtg tgtcgccgcc cagtgcgatg
     1741 gcctcggctt tcgctcaggc cggattccct gattccgcca gattctacgc gcagcgattg
     1801 ctggcgatgc agccggacgt cggacgcatt ggcgttgccg cgttcgcact cgcgcgcgct
     1861 ggagcgccgg ccgagactcg tgcgatcatc aagcggctgg aggccggccc cacggatcag
     1921 tgggagcgct ggaccgcgct ggcgctggcg tatgcggggc tccgcgatac ggcgcggacg
     1981 gtggacgcgc tgcaacatgc agcggccggc gatggcgacg cgttccccga atacggcccg
     2041 cacctcgcgt gcaatatgcc gtcaggtgcg gcgatcgatg cagtgcggcg ccggtaccat
     2101 ctcgaggaaa cgcgcactcc cgcgagtgtt gcgttgatgg cccgatgacc gcgattgcgg
     2161 atcgcctgac cgctgcgctt tcggatcgct accgcatcga gcgcgagctt ggtgcgggtg
     2221 gcatggcaac cgtttacctc gcgcacgacc tcaagcacga tcgcgacgta gcgatcaagg
     2281 tattacatca ggatctcggc gcagcgcttg gcgccgagcg ttttctgacc gagatccgca
     2341 caaccgcgcg actacagcac ccgcacattc ttccgttgct cgattccggc gacgcggacg
     2401 ggctgctgta ctacgtcatg ccggtggtgg cgggcgagac gctgcgtgca cgcctgacgc
     2461 gcgagcaaca gctcccgatc agcgactcgg tgcgcatcgc gcgtgaagtc gcgagcgcgc
     2521 tcgattatgc gcaccggcag ggcgtgattc accgggacat caagccagag aacattctcc
     2581 tgcacgatgg ccaggcactg gttgccgatt tcggaatcgc gctcgccgta cagcaggccg
     2641 gcggtcagcg catgacgcag accggcctgt cgctcggcac gccacaatac atgtcgcctg
     2701 agcaggcaat gggtgagaag agcatcgacg cgcgcactga tatctacgcg cttggtgctg
     2761 tgacgtacga gatgctctgt ggcgacccgc cgttcaccgg ttcgagtgtg caggcaattg
     2821 tcgcgaaggt gatgacggag cgccccacac cgttgcacac cgtgcgcgat acggtgcccc
     2881 cgaacgtcga gcatgcagtg ctggctgcac ttgcaaagct gcctgcagat cgcttcgcca
     2941 ccgccgccga gtttgcgact gcgttgacga gcactgacac gacctacaca ccgacgcgcg
     3001 gacgcacgcc gtttcgtccg atgcgcatcg ctatggctgg agtgccgtgg gcacttctcg
     3061 ccgtcgccat cgctgttgcc ggatggtcac tgctgcgaca acggaatccc gacgcacccg
     3121 tgactcgcgt ggctgtcgca ctcccaccgg ggcaggagat tcaaccgcag atcaacggtt
     3181 tcagtctgga tatatctcgc gacggcacac gcctggccta cgtcgggcag ggaccgacgg
     3241 atggttccac gcagctgtgg gtccgcgcgc tcagcgagct tgacgctacc cctgttcccg
     3301 ggacggcagg cgcgaacagc gtgcgctggt ctgcggacgg acgctcagtc cttttttcgc
     3361 agggaaagag cgcacgcgtc atctcacttg acggcggtca gagcgcgccg ctcgcgggag
     3421 cgaccgacgg aatgtggtcg gcgcctggcg ccgtgtattc gccggaccgt cgagtcatcg
     3481 tgcgtcagaa tgttggcgga actctggaca cggtgctcgc actcgacacg ggattcacca
     3541 tcggcacgtt gactgttctg cccggcgagc gcgcggcgct cttcagccgc ttgagaaaca
     3601 acgcgtcgct ccagactggg ggttacgagc tggccgctgt ttcgttcagg acgagacaaa
     3661 tccatgttct cgggccgggc gtcttcgccc agtatctccc gcctgatcac ctgctgcggg
     3721 tggacgtaag tggcaacgcg tctgttgctc cgttcgacgc tgccgccctg cgcataacgg
     3781 ggccgagcat tccggtcgca cgcatcgcga ccggcgaaaa taccagtcgc gggctggtgg
     3841 tatatcctca gatcaccgct tccgacaacg gtacgctcgt gtatctctca ggcgagatac
     3901 agcgccagcg gctgacctgg ctcgatgcac gagggctcag cagcgggcat ctcgacatcg
     3961 acggcaacct gtggggactc agtctgtcgc ccgacgggag ccatctcgcc tactccaagt
     4021 tccatggcga aggtgaagca gactttggca cgaacgtgtg ggtcgttgat ctcacgacag
     4081 gagtacagac gcagttgacg tcgacgctca tgaacatgcg cccgagctgg tctccggatg
     4141 ggaggtacgt cttgtgggcg cgcgtcgggg gtaattcccg ccaatcgatg atggagcgcc
     4201 gcgcagatgg gagcgagcct gagcgcacgg tgctgacgac gaacaccctc ggccactcgc
     4261 tcggcgacgg acgctggctt cccgatcatc gtacacttgt cgtatcgacc tatgacgatg
     4321 ccgggagccg taacatcttc tccattgtgc ccggcgttga cagcgcgccg cgccctgtcg
     4381 cgactacggc ggcgaacgaa tcgagcccgg ttccctcgcc tgacggcagc atgatggcat
     4441 acacctcgga cgagagcggc attcgcgagc tctacgtgca gagcttcccg gcaaccggcg
     4501 gacacgttgc ggtatcacac ggcggcgcca gcgccggcag atggtcgcac gatgggcgtc
     4561 agctctacta ctgggaccag cgtggcaagc tcatggtggc gaccatccgc gcgcatcccg
     4621 cactcgccat cgagagcgtg cgcgagatcg gcggcgacgt taccctggca acgggaggtg
     4681 ggcaatcgac ggggttgttc gacgtcgcac cagacgggcg tgtgctggtg gctgcgcaga
     4741 tgcccggctc gttcaacctc atcctcgtgc gcaattggac cgccggactc gcacaaggta
     4801 ccaggccatg agcgaacggt ttcgcgcgcc aagctggatc cgcagcatgt tcttcgacac
     4861 cggcattccc tacgatgtga accgcgacgg cacccagttc gtgctgcgca tggcgcccgc
     4921 gtccaccgcc gcggtcctcg ttcagaactg gccagcactg ctgggggcga agtgacggag
     4981 cgagaagcgg catgtccgta agccaggagc agacgcacaa cgtgctggag cgcgcacttg
     5041 cggatcgcta tcgcatcgag cgggagctcg gcggcggcgg aatgtcgcgt gtgttcctcg
     5101 cacgggagat cgcgttcgat cgccaggtcg tgatcaagat catcgcgccg gagctgcgcc
     5161 agggcctgag cgcggatcgt ttcgcacgcg agctccagtt cgccgcacgt ctgcagcagg
     5221 ccaacatagt tccagtgttg agcgccggcg atgccgacgg cacgccctac tacacgatgc
     5281 cgtacgtcga tggcctgtcg ctccgcgcgc gcctcgagcg cggaccggtt ccgctcgggg
     5341 atgcactcga catcatgcgc gacatcgcgc gcgcgctggc ctacgcgcac gcgcagggaa
     5401 tcgtgcatcg cgacatcaag ccggagaacg tgctgctctc gtcaggcacg gcagtcgtaa
     5461 cggatttcgg aatcgcgaag gcactgagcg tgtcccggac cgcggagaca ccacgcgacg
     5521 cgacgctcac gcaaaccggc acgagtctcg ggacgccagc ctacatggcc ccggaacagg
     5581 cgctcggcga ttcagtcgat gcacgcaccg atctgtattc gtggggcctc gtcgcgtacg
     5641 agattctcgg cggcacacat ccgttcgtcg cacacgtgaa tgcccagcga ctcgttgccg
     5701 cgcatctcac ggaggcgccg gcctcactcg cggcccttca acccggcctg ccgccgaaca
     5761 tcgccgcgct cgtcatgcag tgccttgcca aggatcccgc agaccgtccc gccgatgcaa
     5821 acgaagtgct cgcgcggctg tcggctgccg tgacacctgg gacgcattcg gcgccgacga
     5881 acatcgcgcg gtccacggca ttgtggaagc ggcgctggtt cgctgcagca gccgcgatcg
     5941 tactggtggt cgcggctgct gcagcgatgg tgcttgcgcg ccgcggcacc gctgccgcac
     6001 cagtgcgcac cgtcgtcgtc gttccattcg acaacgtcgg caatcccgcg gacgcgtatt
     6061 tcgccgaggg tgtgagcgac gagatcgcga gtcagcttgc gcgcttgccg ggtctgcagg
     6121 taatcggtcg agatggtgtg cagcgttttc gcggatcatc agaatcgccg cgcgacatcg
     6181 cgcgcaggat gggcgcggcg tgggtgttga gcggctccgt tcgctgggcg catgatgcag
     6241 gcagcagtaa tgtcaacgga accacacgcg tacgcatagt tccggcgctc gtaaatgtca
     6301 gcaccggtgt gcaggcatgg ggcgatccgt tcgaggagcc gctcacggac gtgttcaagg
     6361 tccaagccga cattggcgag cgcgtcgcgt ccgcgctgtc tataacgctc ggcggcgctg
     6421 cgcgcgctga attgcacagg caggatacca acgatcccga agctcgcgat gcgcagttgc
     6481 tgggtcgcta tctcctgcaa cagcgcggtg tgaccaacct ccgcggcgca gtaactgcgt
     6541 tcaaccgtgc aatcgtgcgg gattccaact acgcgcgcgc gtgggccgga ctgtcggagg
     6601 cgacggtgct gcttccacag tacaacgaca cgagcgagtc cgacacagtt gtgcttgcac
     6661 gcgccgaagc cgctgcacgt cgcgcggtag cgattgacag cacgctgccg gacgttcagc
     6721 ttgccctcgc gcgctcgcaa tctgcgcagt tccggttccg cgaagcactg cagtcggtga
     6781 accgggcgat cgcggccgat cccacatcga cgctcgcgtt cgcgctcaag tacgagattc
     6841 tcactgcgct cggccgcgtc gccgaggccg acagcacatc gcgccgcgcg gtcgagctcg
     6901 acggactctc ggcgctcgcg ctcaacaacc gcgcgatctc gttctgggca gcgaacagga
     6961 tggacagcgc ggtgcattac tccgagcgcg ccgcggcggt cgacccatcg aacgcgcaat
     7021 ggaagcgcac tctcggaacc atgtacgcga gcgctggccg tctcaaggac gcgcgcatga
     7081 cctgctccaa cggcatgatg gggtcgccag gctcctgtgc cgctgttctg ggcttcatcg
     7141 ccggtgacac cacggaccgg gcagcggtaa tccgcggtct cgacgagagt gcccgccgaa
     7201 gcggtgccgc cggcgcgccg acattcacgg cgtgggtata cgcgcggctc gggatgcctg
     7261 attcagtatt ctcgcgcctg gccgtcgctg ttcaacggca tgacgacgtc ttcgcgcatc
     7321 tgatcacgag caccgcgttc cgaccgtacg aattggaccc gcgctgggat gcgatagtgg
     7381 gcaccgtgcg ccgtcggtga agctgattcg gccagccggc aagtattatt gccgtggacg
     7441 tatgtatgct gtatatatat gccatgaaac ggaccaccat cttcctggac gactcgaccc
     7501 tccgccgcct ccaggggctt gctcagcgaa agcacgtgag cgcggcgacc ctcgtgcgcg
     7561 aagccgtggc gcgttatctc gacgctcccg atcctatcaa gaaactccca tcggtcgctg
     7621 gcagcttcgc gagcggagag agcgacacct ccgagcgcac ggatgagctg ctctggagtg
     7681 acccgcacgc atgatcgtca tcgccgacac cgggtccctg tatgcgcttg ttgaccgctc
     7741 cgatgtgtgg catgaccggg tgatcacgtg gtggagcaaa cgcgcacgga acgtggtggt
     7801 tccatcggtc gtgctgccgg aggtgactta tctgctccag actcgcatcg gcacggccgc
     7861 cgagcaggcg ttcgtgcagg cagcggccga cggcgaattc atgatcgagc cactcgagcc
     7921 ggacgacatc gcccgcgcag ccgagttgct ccacgagtat gcagatctac cgctgggctt
     7981 cgttgatgca gcggtggtgg cgaccgccga gcgactgggc actcgcgaga tcctcacaac
     8041 tgaccggcga cacttcggcg tggtgaagcc gctccacacc aggacgctcg tcctggtgcc
     8101 gtagcccgga ccgatctgcg ttggcgtaga ttatccgcca atcccatgac cggcccagcg
     8161 tcggaccaac cggcaacacg actccagcca tctctgcacg gcagataccg catcgagcgc
     8221 gagctcggcg cggggggcat ggcgactgtc tatctcgcgc acgacatcag gcacgaccgc
     8281 gacgtcgcga tcaaggtgct caagcctgac atctccgagt cgttgggccg agaacgcttc
     8341 gtgcgcgaga tccgcctggc cgcacgactc aaccatccac atatcctccc gctgtacgac
     8401 tccggtgatg cagacggctt tctctatttc gtcatgccgg tgatgcaggg acagacactg
     8461 cgcgaccgca tgcgtgacga aggtcaactc cctgttgatg ccgcggtacg cctggtgcag
     8521 gaagtggcag acgcgctcga ttacgcgcat cggcacgacg tggtgcaccg cgatatcaag
     8581 ccggagaaca tcctcctgca cgagggccac gcgctcgtcg ctgacttcgg catcggaaag
     8641 gcaattattg ctgccgcagc gagtggtgtg gcgacgttga cccaggttgg cgtcaccgtc
     8701 ggaacgcccg cgtacatgag tcccgagcag gctgcgggtg acgaaatcga cggacgcagc
     8761 gatctcttcg cattgggttg cgtactgtac gagatgttga ccggcgagcc tgcgttcaca
     8821 ggttctactg ttcaggccgt tatcgcaaaa cgttttcatt attctccacc atcagctagc
     8881 gcgataagac ctacggtgcc ggctggtgtc agtcatacga tagaacgcct gttggagaga
     8941 gatccgacgg cgcgtatacc aaccggggcg ttggttatag cggcgcttcg tgaacaggat
     9001 acatcgccgg cggtgcaggc tccgcggcgc gccgaacagt cggttgcggt ccttccgttc
     9061 gctaatatga gcgcgagcgc cgacgacgat tatttcgccg acggcatcac cgaagagatc
     9121 atcaacctgc tcgcacagct caatggcctg cgcgttgccg cacgtacctc gtgcttcgct
     9181 ttcaagggaa agaacgagga cctccgtata gtaggggaga agctcggggt acagcacgtc
     9241 ctcgagggaa gtgtgcgcaa ggctggtcca catgtgcgga tcacggcaca gctcatcaac
     9301 gcg
//
LOCUS       DATIMD010000226         4169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1817719, whole genome shotgun sequence.
ACCESSION   DATIMD010000226 DATIMD010000000
VERSION     DATIMD010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4169
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1817719"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..232
                     /locus_tag="VLI40_05220"
     CDS             <1..232
                     /locus_tag="VLI40_05220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96608.1"
                     /translation="YPSDTLLAQLVTRDGARKSTLDTTDATGTSQRRIRLRPLSLKSV
                     NDSVVVVATVRYRGIPVAGSPVRFVVQVKPHP"
     gene            298..2100
                     /locus_tag="VLI40_05225"
     CDS             298..2100
                     /locus_tag="VLI40_05225"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HSU96609.1"
                     /translation="MFFEAIERYDKPDALQAKIGGRYEPISHRSLLERVRHVAYALQQ
                     IGVKSGDRVAILSENRPEWAIADFACLTTGVTDVAIYPTLPDPQIAYILKDSGATAIF
                     VSTAEQAQKLAMIRHQLPALRCVISFDSVESGLADFGMAEFERRGAADEPPDAATRHR
                     ERALQIRPEDIATFLYTSGTTGEPKGVMLTHDNIFSNVSAARELIPFAGNDVALSFLP
                     LSHILERMAGHYLMFAMGASIAYAESTNTVPDNMMEVHPTLMISVPRLYEKMYGRVVE
                     GGMTGGALKKRIFVWARATGEKWADVKLAGATPRGILAAQYSLAQRLVFSKLKTRTGG
                     RLRYMVSGGAPLSPEINKFFYAAGLTILEGYGLTETSPVIAVNTPGAFRIGTVGMAIP
                     GVSIAVADDGEILVQGPNVMAGYYNKPSMTEEAIDSDGWFHTGDIGVLKDGFLTITDR
                     KKDLLVTAGGKNIAPQPIEALMKRSKFVAEAVLIGDRRKFPMALVVPDFDQLERWARY
                     KGLTFADHESLIALPEARAKMERETLASLGELARFETPKKVALLPHEFSVDRGELTPT
                     LKVKRRVIDDHYRHLIDAVYADADRAGSAPVESH"
     gene            complement(2077..2697)
                     /locus_tag="VLI40_05230"
     CDS             complement(2077..2697)
                     /locus_tag="VLI40_05230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96610.1"
                     /translation="MFIELLDGLRCVEDHPQIPLVAAILQRDERFVVRGVLGCPTCRR
                     EYQLEDGAAWFRDRNGDVEAQQSLPRDDEGAMRIGAFLAAADGATIALVGDWARYAIE
                     LSELVGLRAYAVNPQAPIGESERVGTLYSNNRLPVTDGSLRGVAIDDSDWSADQIRVA
                     VRSLSAGGRMVAPATLPVPGEMEEIARDDLWWIGEKRGPLVALHRR"
     gene            complement(2730..3458)
                     /locus_tag="VLI40_05235"
     CDS             complement(2730..3458)
                     /locus_tag="VLI40_05235"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU96611.1"
                     /translation="MALSNRLAGRSALVTGASRGIGEAIARALAADGGQVALVARSAD
                     ALQRIAGEIGHGAFAAPCDITDEASVRGMAERVESELGGAPDIVVNNAGVFQVAPIAE
                     MSMRLFSDVLNTNLFGPFLVVHAFLATMKARGAGHFVNMGSIADRGIFPENGAYAPAK
                     YALRAMHEVLRLELKGSGVRATLVSPGPVDTDMWDGITFNGTERIVPDRAAMLAPRDV
                     ASAVLYAVTQPAVVNIDELRLSRS"
     gene            complement(3449..3994)
                     /gene="folE"
                     /locus_tag="VLI40_05240"
     CDS             complement(3449..3994)
                     /gene="folE"
                     /locus_tag="VLI40_05240"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HSU96612.1"
                     /translation="MVRKQLTLLGEDPAREGLLKTPGRVARSMAFLTRGYQQDARTVI
                     GDAMFEEEHSNMILVRDIELYSMCEHHMLPFFGKAHIAYIPDGRIVGLSKLARVVDIF
                     ARRLQVQERLTVEIAQAITDVLKPRGVGVVIEAAHLCMMMRGVQKQNSTTVTSAVLGS
                     FREDPKTRDEFLRLIQNGSSL"
BASE COUNT          813 a         1335 c         1253 g          768 t
ORIGIN      
        1 atatcccagc gatacacttc tggcgcagct cgtgacacgt gacggtgcac ggaaatcgac
       61 gctcgacacc actgatgcga ccggcacttc gcagcgacgc atccggcttc gcccgttgag
      121 cctcaagagt gtcaacgact ccgtcgtcgt cgtggcaact gtacgttacc gtggtattcc
      181 cgtcgctggg tcgcccgttc gatttgtagt tcaggtgaag ccgcacccgt aagactggag
      241 ctgtagatgc tcgtggtgaa cggtggacca cgtcccaggc ctggtactct tactcaattg
      301 ttctttgagg caatcgagcg gtacgacaag ccggacgcgt tgcaggcgaa gatcggagga
      361 cgctacgagc ccatttcaca ccgctctctt ctggagcgcg tgcggcacgt cgcgtacgcg
      421 ttgcaacaga tcggggtgaa gtccggcgat cgtgtcgcga tactttcgga gaaccgcccg
      481 gagtgggcga tcgctgattt cgcgtgcctg accacgggcg tgaccgacgt cgcgatctac
      541 cctactctcc ccgatcccca gatcgcgtac atactcaagg actcgggcgc gaccgcgatc
      601 ttcgtttcaa ccgcggagca ggcgcagaag ctcgccatga tacgccacca gcttcccgcg
      661 ctcaggtgcg tcatcagctt cgattccgtc gagtccggcc tggcggattt cggcatggcg
      721 gagttcgagc ggcgcggcgc ggcggacgag ccgccggacg ctgcgacgcg gcaccgcgag
      781 cgagcgctgc agatacggcc cgaggacatc gcaaccttcc tgtacacttc ggggacgacc
      841 ggcgagccga agggcgtcat gctcacgcac gacaacatct tttccaacgt cagtgcagcg
      901 cgcgagctga ttccgttcgc cggcaacgac gtcgcactca gcttccttcc gctgtcacac
      961 atcctggagc ggatggccgg acactacctg atgttcgcga tgggcgcgtc catcgcgtac
     1021 gcggaatcga cgaacacggt gccggacaac atgatggagg tgcatccgac gctcatgata
     1081 tcggtcccgc ggctgtatga gaagatgtat gggcgtgtcg tcgaaggcgg catgaccggc
     1141 ggtgcgctca agaaacggat attcgtatgg gctcgcgcga caggtgagaa atgggcagat
     1201 gtgaagctcg ctggcgcgac gccgcgaggt attctcgcag cccaatactc gctcgcacag
     1261 cggctcgtat tctccaagct caagacacgc accggcggcc ggcttcgcta catggtatcc
     1321 ggcggcgcgc cactctcgcc cgagatcaac aagttcttct acgcggccgg tctcactatt
     1381 ctcgaaggct acggtcttac tgaaacgtca cccgtcatcg cagtgaacac tccgggtgca
     1441 tttcgaatcg gaactgtcgg catggcaatt ccgggtgtgt cgatcgccgt cgcggacgac
     1501 ggggagattc tggtgcaggg tcccaacgtg atggccggct actacaacaa gccgtcaatg
     1561 accgaggaag cgatcgattc cgacggatgg tttcacactg gcgacatcgg cgtgctgaaa
     1621 gacggattcc tcacgatcac ggaccgcaag aaggatctgc tcgtcaccgc gggcggaaag
     1681 aacatcgcgc cgcagccgat cgaagccctt atgaaacgca gcaagttcgt tgctgaagcg
     1741 gtgctgatcg gagaccgacg caagttcccg atggcactgg tggttccgga cttcgaccag
     1801 ctggaacggt gggcgcgtta caagggactc actttcgccg accacgaaag cctgatcgcc
     1861 ctcccggaag cgcgcgccaa gatggaacgc gaaacgctgg cgagcctggg cgagctcgca
     1921 cgcttcgaga cacccaaaaa ggtcgcgttg ctaccgcacg agttctccgt ggatcgtggc
     1981 gagcttacgc cgacgctcaa ggtcaagcgg cgcgtgatcg acgatcacta caggcatctt
     2041 atcgacgccg tctacgcgga cgcagaccgc gctggctcag cgccggtgga gagccactag
     2101 cggcccgcgc ttctccccga tccaccagag atcgtcgcgc gcgatctctt ccatttcacc
     2161 aggtacgggc aatgtcgcag gtgcgaccat gcggccgccc gcggacagag aacgcactgc
     2221 aactctgatc tggtcggccg accagtctga atcatcgatc gcgacgccgc ggagcgagcc
     2281 gtcggtaact ggcaggcgat tgttcgaata cagcgttccg acgcgctccg actctccgat
     2341 gggtgcctgc gggttgaccg cgtatgcgcg caggccgaca agttctgaaa gctcgatcgc
     2401 gtaccgagcc cagtcaccca cgagcgcgat ggttgctcca tcggcggctg cgaggaacgc
     2461 accaatccgc atggcgcctt cgtcatcgcg cggcaacgac tgctgtgcct cgacgtcgcc
     2521 gttccggtcg cgaaaccatg cggcgccatc ctccagctga tactcacgac ggcaggtagg
     2581 gcagccgagt acgccacgca ccacgaagcg ctcgtcacgc tgaaggatcg cggcaaccag
     2641 cgggatctgc ggatgatcct caacgcagcg caagccatcc agcagttcga tgaacatgct
     2701 gcagtcggtt ccggtgcgtt acagacgcgt cacgagcgtg acagccgcag ctcgtcgatg
     2761 ttgacgacag ccggttgcgt cactgcgtac agcaccgcgg atgccacgtc acgtggcgcg
     2821 agcatcgctg cacgatccgg aacgatccgt tcggtgccgt tgaacgtgat gccgtcccac
     2881 atgtctgtgt cgaccgggcc cggggagaca agcgtggcgc ggacgcccga ccctttcaat
     2941 tccagcctga gtacctcgtg catggcgcgc aacgcgtact tggccggcgc atacgcgccg
     3001 ttctcgggaa agattcctcg atcggcgatc gatcccatgt tcacgaaatg ccccgcacca
     3061 cgcgctttca tggtcgccag aaatgcatgc acgaccagaa atgggccgaa cagattggta
     3121 ttgagcacgt cgctgaacag acgcatcgac atctctgcga tcggcgcgac ctgaaagact
     3181 cccgcattgt tgacgacgat atccggcgcg cctcccaact cggattcaac gcgctcggcc
     3241 atcccgcgca ccgaagcctc gtccgtaata tcgcacggcg cggcgaatgc gccgtgcccg
     3301 atctcgccag caatgcgctg caaggcatct gcggaacgcg cgacgagcgc gacttgccct
     3361 ccatcagcag cgagggcgcg cgcgatcgct tcgccgatgc cgcgcgacgc gcccgttacg
     3421 agcgcgcttc tgcccgcgag acgattgctc agagcgatga cccgttctgt atgagccgca
     3481 ggaactcgtc gcgcgtcttg ggatcctcac gaaacgatcc cagtaccgcc gaagtgacag
     3541 tcgtcgagtt ctgcttctga acgccgcgca tcatcatgca gaggtgcgcc gcctcgatca
     3601 ccactccgac accgcgcggc ttgaggacat ccgtaatggc ctgcgcaatc tcgaccgtga
     3661 gacgctcctg cacctgcagt cgtcgcgcaa agatgtccac aacgcgcgca agcttcgaga
     3721 gtccgactat ccgtccgtcc ggtatgtacg cgatgtgtgc ctttccgaag aacggcagca
     3781 tgtggtgctc gcacatggaa tacagctcga tgtcacgcac caggatcatg ttcgagtgct
     3841 cttcctcgaa cattgcgtcg ccgatgacag ttcgcgcatc ctgttgatag ccgcgtgtaa
     3901 ggaacgccat ggagcgtgca acgcggcccg gtgtcttgag caatccctcg cgcgctggat
     3961 cctcgccgag cagggtcagc tgcttgcgta ccatgtcttc gtacacggac agcatggctg
     4021 ccgacgcgct gggcggcgct acgtcgtcgg tatccggctc gaatatcgta ttagtggcca
     4081 tcgtattcca cgtagttgtt ctccgtttcc cacagtacca gtctgacaag acggcccggc
     4141 ttgatctttc cttcgaggat gcgccagaa
//
LOCUS       DATIMD010000227         7285 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4125223, whole genome shotgun sequence.
ACCESSION   DATIMD010000227 DATIMD010000000
VERSION     DATIMD010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7285
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4125223"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..329)
                     /locus_tag="VLI40_05245"
     CDS             complement(<1..329)
                     /locus_tag="VLI40_05245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96613.1"
                     /translation="MSGTIAAAVLVVFTAAVPTAAQAQVDRSKPPVLGPPPALHIPPV
                     AVRELANGLKLMVVERHNLPVADFVLVIPSGATANPADRAGTADLVANMLTEGTTTRS
                     ALQIADQT"
     gene            complement(338..1720)
                     /locus_tag="VLI40_05250"
     CDS             complement(338..1720)
                     /locus_tag="VLI40_05250"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSU96614.1"
                     /translation="MARFRYAAVRLLSAGAAAAVAFAAAAGAQSIPRIPFEKYTLPNG
                     LEVILHQDHTTPMIAVDTWYHVGSGDEKPGHTGFAHLFEHLMFMGSQHVPTGQFDQLL
                     EAAGANNNGSTTEDRTNYYETMPSNALPLALYLDSDRMGFLLPALDSAKVDLQRDVVK
                     NERRQRVDNVPYGRADETILAALYPKGHPYSWPVIGSMADLSAATLADVKNFFRTYYA
                     PNNATLVIAGDFNADSAKALVKHYFGDIPRGPQIPARPSPAPVVIPRDTFLVLQDRVQ
                     LPRVYYTWPSVKNFAHDDAALNVLGSVLADGKNSRLYKRLVYDMQIAQDVNAYQNGEH
                     LAGYFQVVVTPRKGIAPARIDSLVRSELVRVQKDGITARELARVQNSTRSDFLRSLAT
                     DLGKAELLNQYNYFVGDPDYVQRDAARYDAVTRADVQRVARMYLSKPKVVLTVVPDGM
                     TALMVKGGSR"
     gene            complement(1722..3104)
                     /locus_tag="VLI40_05255"
     CDS             complement(1722..3104)
                     /locus_tag="VLI40_05255"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSU96615.1"
                     /translation="MEIEFYGAAREVTGSCHILRANGKVVILDCGMFQGRRSESAEKN
                     KTLPVEVAEIDAVVLSHAHIDHSGRLPYLVREGYSKTIFATAATRDLCAVMLADSAHI
                     QESDAKHLAKNHKGFVEPLYTMRDAVRTQDLMIGIPYNKTFDVVPGVRCTYIDAGHIL
                     GSASVLLDVTENGTTKRLVFSGDIGRPGLSIIRDPVVPQGADVVIMESTYGNRDHETV
                     IDARAQLAAVVRDTAARGGRILIPSFAVGRTQELLYNLNGLLREGAIPAIPIYVDSPL
                     ATDTTTVFEMHPEVFDHTEDLVNKAKDLFQFPQVHFTRSVEESKGLNTAQGPMVIIAA
                     SGMVEAGRILHHLVRGAADPKNTILFVGYQAEGTLGRRIETKPPTVRIYGDDVPLRAE
                     VKILDGYSAHADRTELTAWIDGVKATSPRLGEVFLVHGEADVQDIFKTALSAKGYTVE
                     CPEPRAKRTV"
     gene            complement(3141..3311)
                     /locus_tag="VLI40_05260"
     CDS             complement(3141..3311)
                     /locus_tag="VLI40_05260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96616.1"
                     /translation="MKEYQAVVVKLTRHTRENEDTLTDLLNERIRGGWEPALISQDKE
                     QLVLIFCRSAEG"
     gene            3319..3954
                     /gene="upp"
                     /locus_tag="VLI40_05265"
     CDS             3319..3954
                     /gene="upp"
                     /locus_tag="VLI40_05265"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HSU96617.1"
                     /translation="MEFSNLTIIRHPLVLHKLTLLRDRRTSTKIFKELVDEIATLMAY
                     EATKDLGIEPRHVDTPLEHTTGHHISGKKLTLVPILRAGLGMVEGVLRLVPSARVGHI
                     GLYRDHETLQPVDYYFKIPGDAAERDFFLLDPMLATGGSAVAAVSSLKRTGATRIRFL
                     CLVAAPEGVQKLLDAHPDVQIYAASLDRELNSVGYILPGLGDAGDRLFGTR"
     gene            complement(4004..4654)
                     /locus_tag="VLI40_05270"
     CDS             complement(4004..4654)
                     /locus_tag="VLI40_05270"
                     /inference="COORDINATES: protein motif:HMM:NF021501.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2225 domain-containing protein"
                     /protein_id="HSU96618.1"
                     /translation="MTALRKIELRCPSCSHEFPSETVVSTNWFGGKRTDFHERAAGAQ
                     PWAYQVHMCDRCGYSGAERDFTEQTEISPLVRERVWNELSPHAHGVATGSEKYEAAAK
                     VAEWQGADQRYIGDLWLRAAWCCVDENDVEAERYFRRLAAWSFEQALEFYDTVPRDDR
                     AVLVYLVGELWRRIGDLTQANAWFDLVPDEVTDPVAQHWVIEAARRQQADPREWFA"
     gene            4845..5780
                     /locus_tag="VLI40_05275"
     CDS             4845..5780
                     /locus_tag="VLI40_05275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96619.1"
                     /translation="MLPDFFAVIDSTDRVAAYLRYFEAHRRILESYWTNYVLDPEGPH
                     FQEVVRATTHANRDDLRAMLARIDVVALARLAEAESRRVLEADVDTDVVLMVGVGAAN
                     AGELVVDGRGMAFIALEHFTGQPNPDTSALGLEPELIPLWLAHEIAHAVRYTSPTSRS
                     EMRQLIAEAGGYYDYWETGRRASLRELIVNEGVAVQTSRIVSPGHAAWEYFGYARKEY
                     ARVREAESFIMRTVAKHFDRAGLGLRLRYLSGGMSDDARTVDRNVIPERSGYFVGARL
                     TDAAVNSRGLAWTVRADASQIAAAAAGQQSSAASA"
     gene            5847..6626
                     /locus_tag="VLI40_05280"
     CDS             5847..6626
                     /locus_tag="VLI40_05280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96620.1"
                     /translation="MSDFRPRSNSEILDAAFEIYRRHFAVFMAINVIAAVPWAISSYF
                     GQTAILLQQTDGLFASALIRFAGVLISPFTEGAIACATSAAYLGNQVDFEQSMRAALS
                     RPGRLFIAMIAKWILIFFGLVLFIAPGLLVFKRYFALPMTVLFEDNKVGDAVSRSRDL
                     SNGNGTRIFALLGGVFAFVIVASGILLQLIQSFAHSAAATAIVTLILTTAISPFSTIV
                     ATLLYYDIRIRREGYDIELMTQALGAPGSMNAASPQLHSAI"
     gene            6653..>7285
                     /locus_tag="VLI40_05285"
     CDS             6653..>7285
                     /locus_tag="VLI40_05285"
                     /inference="COORDINATES: protein motif:HMM:NF024948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4129 domain-containing protein"
                     /protein_id="HSU96621.1"
                     /translation="MGPFDNAAIADTVAAVFRSSAFAGRGTVSIGELVAEWIWNLVLR
                     FFGFAQSHPAVGIVFRLALGLALLIVLGRIAYGLLARFAPSAIGVRRFETGRNTDWWN
                     TAQKLAAQNDYTGAAHALYLALIGAAARRGLVSLHESKTTGDYLRELRRRPAGIDLPR
                     FTDFTRSYEMVIYGIGTCDRDRFTTLNALAASLLQAIPSGSAANGAPRTAS"
BASE COUNT         1376 a         2405 c         1964 g         1540 t
ORIGIN      
        1 gtctgatccg caatctgcag agcgctccgg gtagtcgttc cttccgtcaa catgttggcg
       61 acgaggtccg cggtacccgc acgatccgca ggatttgctg tcgctcccga tgggatcacg
      121 agaacaaaat cagccaccgg cagattgtga cgctctacaa ccatcaactt gagtccgttc
      181 gcaagctcgc gtactgccac gggcggtatg tgcaacgccg gcggcggacc aagcaccggc
      241 ggtttgctgc gatccacctg cgcctgcgct gccgtcggta ctgcggctgt aaacaccacg
      301 agtaccgctg ctgcgatggt gccggacact cgatatctca tctcgagcct cctttcacca
      361 tcagtgcggt cattccgtcc ggcacaaccg tcagcacgac tttcggtttg ctcaggtaca
      421 tccgcgcgac ccgctgcacg tcggctcgcg ttaccgcatc gtatctcgcc gcgtcgcgct
      481 gcacgtagtc cggatctccc acaaagtaat tgtattggtt caacagctcg gccttcccca
      541 gatccgtcgc gagtgatcgc agaaagtcgg atcgggtcga gttctgcacg cgcgccagct
      601 cccgcgcggt tattccgtcc ttttgcaccc tgacgagctc cgaacggacc agagagtcga
      661 tcctcgccgg cgcaattccc tttcttggtg tcacgacgac ctgaaagtag ccggccaggt
      721 gctcgccgtt ctgatatgca ttcacgtcct gcgcgatctg catgtcgtag acaagccgct
      781 tgtacaaccg ggagttcttg ccatccgcga gcaccgatcc cagcacgttc aacgctgcgt
      841 catcgtgcgc gaaattcttc actgatggcc acgtgtagta cactcgcgga agttgaaccc
      901 tgtcctgcaa tacgagaaac gtgtcacgcg gaatcacgac tggcgccggc gatggcctcg
      961 ccggaatttg cggaccgcgc ggtatgtcgc cgaagtagtg cttcaccagt gccttcgccg
     1021 aatcggcatt gaaatctccg gcgatcacca gtgttgcgtt gttgggtgcg taatacgtcc
     1081 tgaagaaatt cttcacatcc gcgagcgttg ccgccgagag atcagccatc gatccgatca
     1141 cgggccacga atatggatga cctttcggat ataacgctgc caggatcgtc tcgtctgccc
     1201 ttccgtatgg cacgttgtcc acacgctggc ggcgttcatt tttcactacg tctcgctgta
     1261 aatccacctt cgcgctatcc agagcgggga gcagaaaacc catccggtcg ctgtccagat
     1321 atagcgccag cggcaacgcg ttcgacggca tcgtctcgta atagttcgta cgatcttccg
     1381 tcgtcgagcc attgttgttc gcgcccgccg cttccagtag ttgatcgaac tgcccggtag
     1441 gtacgtgctg cgagcccatg aacatcagat gctcgaagag atgcgcgaac cccgtgtggc
     1501 cgggcttctc gtcgcccgag cccacgtgat accacgtgtc caccgctatc atcggcgtcg
     1561 tgtgatcctg atgaagaatc acctccagac cgttcggcag cgtgtacttc tcgaatggaa
     1621 ttcgcggtat ggattgcgcg ccggctgccg ctgcaaacgc cacggccgcg gcggctcccg
     1681 cagagagcag ccgcacagct gcgtacctga atcttgccat gtcagaccgt ccgctttgct
     1741 cgtggttccg ggcattccac agtgtacccc ttcgcactca acgcagtctt gaagatgtcc
     1801 tgcacgtctg cctcgccatg caccagaaac acttcgccca gtcgcggaga cgtcgccttc
     1861 acaccgtcga tccaggcagt tagctccgtc cggtcagcgt gggcactgta gccgtccagg
     1921 atcttcacct ctgcgcgcaa cggcacgtca tcgccgtaaa tccgcacggt cggtggcttc
     1981 gtttcgattc tcctgcccag tgttccctcg gcctgataac ccacgaacag aatcgtgttc
     2041 ttgggatcgg cggcgcctcg taccagatga tgcaggatgc gccccgcttc caccatcccc
     2101 gatgccgcaa tgattaccat cggtccctga gccgtgttca accctttcga ctcctccacg
     2161 ctccgcgtga agtgcacctg tggaaactgg aacaggtcct tcgccttgtt caccaggtct
     2221 tcggtgtggt cgaacacttc cggatgcatc tcgaatacgg tggtcgtgtc cgtcgcgagc
     2281 gggctgtcca catagatcgg aatcgcggga atcgccccct cccgcaaaag tccgttcaga
     2341 ttgtagagca gctcctgcgt gcgcccaacg gcgaacgatg gaatcaggat ccgtccacca
     2401 cgcgccgcgg tgtcccgtac gaccgcggca agctgagccc gtgcatcgat cacggtttca
     2461 tggtcgcggt tgccgtacgt cgactccatg atcaccacgt ccgccccctg cggcactacc
     2521 gggtcccgga tgatcgacag gcccggccgg ccgatatcac cggagaagac gagccgcttc
     2581 gtcgtcccgt tttcggtgac gtcgagcaat acggacgccg agccgagaat gtgacccgca
     2641 tcgatgtacg tgcaccggac tcccggcacg acgtcgaagg tcttgttgta cggaatgccg
     2701 atcatcagat cctgcgtccg caccgcatcc cgcatcgtgt acagcggctc gacgaacccc
     2761 ttgtgattct tcgccagatg cttggcgtca ctctcctgta tgtgcgccga gtcggccagc
     2821 atcacagcgc acaggtcgcg cgtcgccgcc gtcgcgaata tcgtcttcga atacccctct
     2881 cggaccagat agggcagccg tcccgagtgg tcgatatgcg catgcgacag caccacggca
     2941 tcgatctccg ccacctccac gggcagcgtc ttgttcttct ctgccgactc gcttcgccgc
     3001 ccctggaaca tcccgcaatc caggatcacc accttgccat tggcgcgcag aatgtggcac
     3061 gacccggtca cttcccgggc tgcgccgtag aattctattt ccatgtttgg tatctaattg
     3121 gtactaattg atgggatcga tcaaccttcg gctgacctgc agaatatcag gaccagctgc
     3181 tccttgtcct gacttatgag cgccggctcc cagccgccac gaatccgctc gttgagcaga
     3241 tctgtcaggg tatcttcatt ctcacgcgta tgccgcgtaa gcttgaccac cacagcctga
     3301 tattctttca ttgggattat ggagttttcg aacctcacta ttatccgcca cccgcttgtc
     3361 ctccacaagc tcacattgct tcgggacagg cgcacttcca ccaaaatctt caaggaattg
     3421 gtggatgaga tagcgaccct gatggcttac gaggccacca aggatctcgg catcgagccc
     3481 cgacatgtgg atacgccgct cgagcacacc acgggtcatc atataagtgg caagaagctg
     3541 acgctcgttc cgatcctgcg cgccggcctg ggaatggttg aaggagtcct caggctggtg
     3601 ccatcggcgc gcgtgggcca catcggcctc taccgcgatc acgagactct ccagcctgtc
     3661 gactactact tcaagattcc cggcgatgcc gccgagcgtg atttctttct tctggatccg
     3721 atgctcgcga ccggcggaag cgccgtcgca gcagtctcct cactcaagag aaccggcgca
     3781 acgcgcatcc gattcctctg tctcgtcgct gcgcccgaag gcgtccagaa acttctcgac
     3841 gcacatccgg acgtacagat ctacgcagca tcactcgatc gtgagctgaa ttccgtgggc
     3901 tacattcttc ctggtctggg cgacgcggga gacagactct tcggcacgcg ctgaaagcac
     3961 accgaagctc gtcgtaccaa agctgatccc gccagaactg atcctacgcg aaccactcgc
     4021 gtggatcagc ctgctgtcgc cgcgctgctt ctatcaccca atgctgtgcc accggatcgg
     4081 tgacctcatc cggcaccaga tcgaaccacg cattcgcctg cgtcaggtcg ccgatacgac
     4141 gccaaagctc gccgaccaga tacacgagaa ctgcacggtc gtcacgcgga acggtatcat
     4201 agaattccag agcctgctcg aacgaccacg ccgccagccg cctgaaatat cgttctgcct
     4261 cgacgtcgtt ttcatccacg caacaccagg cggcgcgcag ccacaggtcg ccgatgtagc
     4321 gctgatcggc gccctgccac tccgctacct tggccgccgc ttcgtacttc tcggatccgg
     4381 tcgccacacc atgagcatgt ggcgatagct cgttccatac tcgttccctt acaagcgggc
     4441 tgatctcggt ctgctcggta aagtcgcgct cggcgcccga gtaaccgcat cggtcgcaca
     4501 tgtgcacctg atatgcccac ggctgcgccc ccgcggcgcg ttcgtgaaaa tccgttcgct
     4561 tgccaccaaa ccagttggtg gatacgaccg tctccgatgg aaactcatgg ctacacgacg
     4621 gacatcgcag ctcgatcttg cgcaatgcag tcataggatc ttcgtctgcc tcccctgccg
     4681 gcatataagg aatttctgtg ccacgacatg ggtttgatcg tcaatgcagt cggctgatgc
     4741 tcggcaggac gacccgccaa tgcaggaata ttcgccgagt tggccgttta ctcttgttgt
     4801 gcatttccca acgcggtatt ttcttggcgc cgatgctgat caacttgctc ccagattttt
     4861 tcgctgtcat agacagcaca gatcgcgtcg cagcttatct gcgctacttc gaagcacatc
     4921 gccgaatact ggagtcgtac tggacgaact atgtcctcga ccccgaaggt ccgcacttcc
     4981 aggaagtagt tcgagctacg acccacgcca atcgcgatga cctccgcgcc atgctcgcac
     5041 gcatcgacgt cgttgcactg gctcggctcg ctgaagccga aagccggcga gtgctcgaag
     5101 ccgatgtcga taccgatgtc gtcctcatgg tcggcgtcgg cgcagcgaat gcaggcgagc
     5161 tcgtggtcga tggtcgcggc atggccttca tcgcccttga acacttcacc ggacaaccca
     5221 atccggacac cagcgcgctg ggtctcgagc cggagctcat tccgctctgg ctcgcgcacg
     5281 aaatcgcgca tgcggtccga tacacctcgc ctaccagccg gagcgagatg cgccagctca
     5341 tcgctgaagc cggtggatac tacgactact gggaaaccgg acggcgcgca tcgctccgcg
     5401 agctcatcgt caacgaaggc gtcgccgtac agaccagccg gatcgtgagc cctggccacg
     5461 ctgcctggga atatttcggc tacgcccgca aggaatacgc tcgtgtacgc gaagcggaat
     5521 cattcataat gcgcaccgta gccaagcatt tcgaccgggc gggacttggt ctacggctgc
     5581 gctatctatc cgggggaatg agcgacgatg cacggacggt cgatcgcaac gtaatccccg
     5641 aacgcagtgg ctacttcgtc ggagcccgtc taaccgacgc agcagtcaac agtcgcggac
     5701 tcgcctggac tgttcgcgct gatgcttcac agatagcggc cgccgccgca ggtcagcagt
     5761 cgtccgccgc aagcgcgtga tctgacggcc atcatggcag ctcggctgac atcgctgcca
     5821 gacaccagca ccagcccgct gcgctgatgt ccgactttcg cccccgctcc aactccgaga
     5881 tactcgatgc agcattcgag atctatcggc gccatttcgc cgtcttcatg gcgatcaatg
     5941 tcattgcggc agtaccctgg gccatctcgt cctactttgg ccagacggcg atcttgctgc
     6001 agcagacaga cggactgttc gcgtccgcgc tcatccgttt cgctggcgtg ctcatatcgc
     6061 cattcacaga aggcgcaatc gcctgcgcta cctcggccgc atacctcggc aatcaggtcg
     6121 acttcgagca gtcgatgcgt gccgcactca gtcgccccgg cagattgttc atcgccatga
     6181 tcgccaagtg gattctcatc ttcttcggcc tcgtcctctt cattgcaccc ggactcctgg
     6241 tcttcaaacg ctacttcgcg ctgcccatga ctgtactgtt cgaggataac aaggtgggcg
     6301 acgcagtatc gcgctcgcgt gatctctcca atggcaacgg cactcgcata ttcgcgctgc
     6361 tcggcggcgt tttcgctttc gtgatcgtcg cgagcggcat cttgctgcag ctgattcagt
     6421 cattcgcgca cagcgcggcg gcaactgcca ttgttacact catattgacc actgcgatat
     6481 cgccgttctc caccatcgtc gcaactctcc tctactacga catccggata cgccgggaag
     6541 gctatgacat cgagctcatg acacaggccc tcggagcacc cggcagtatg aatgccgcct
     6601 cgccgcagtt gcattcggcc atctgaacca gattagtatc taatcgatac taatgggccc
     6661 atttgataat gccgcgattg cggatacggt cgccgcggtc ttccgcagca gcgccttcgc
     6721 cggtcgcggt accgtttcca tcggcgagct ggtcgcggaa tggatatgga atctggtgct
     6781 ccgatttttc ggcttcgcac agagtcaccc ggctgtcggt atcgtatttc gtctcgccct
     6841 gggtttggcc ttgctcatcg ttctcggccg aatcgcatat ggactcctcg cgcgcttcgc
     6901 gccgtccgcg atcggagtgc ggcgctttga gactggccgc aacacggatt ggtggaacac
     6961 cgcacagaag ctcgcggcac agaacgacta caccggcgcg gcgcacgctc tctatctcgc
     7021 actgatcgga gccgccgcac gccgcggact cgtctccctc cacgaatcca aaacaacagg
     7081 cgactacctt cgcgagcttc gcaggagacc ggccgggatc gatctgccgc gattcacgga
     7141 tttcacacgc tcgtacgaaa tggtgatcta cggcatcggt acctgcgaca gggaccgctt
     7201 caccacgttg aacgctctgg cagccagcct cctgcaggcg atcccgtcgg gatctgccgc
     7261 gaacggtgct ccgcgtactg cgtcc
//
LOCUS       DATIMD010000228         5834 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3260686, whole genome shotgun sequence.
ACCESSION   DATIMD010000228 DATIMD010000000
VERSION     DATIMD010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5834
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3260686"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1113
                     /locus_tag="VLI40_05290"
     CDS             <1..1113
                     /locus_tag="VLI40_05290"
                     /inference="COORDINATES: protein motif:HMM:NF027637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HSU96622.1"
                     /translation="ASVMDYPGPLVTLRPNGTLDVSHAWATGTGAYDTLAIRFDYTQY
                     ANAAAESAGQEALARQAIAGGARFLSDRDASAGVYPEVTRWLNGDDAVKELARESAVR
                     DVLISKFNESVIRPGDPMWMINERFVPVYLHHRYAIEAATKAIGGMEYTFALRGDGQT
                     PATVVAPAKQREALRELIATIQPRELAVPERIVKMIPPSPYGYGGGWGFATTPAGIVY
                     DPLAIARALAGNVADGILQPDRMERVMSFHARDAASPSADEVIGQLIDGVYTNAAATT
                     AYERGVRRQARRAVVDALFELAADQKSTADVQAVANDRLSRLATSLSAAKTTDTEDRA
                     ANAEVVRNVRNWLDRHIAPPHPTGVIELPPGTPIGG"
     gene            complement(1218..3773)
                     /locus_tag="VLI40_05295"
     CDS             complement(1218..3773)
                     /locus_tag="VLI40_05295"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU96623.1"
                     /translation="MINDDAHSLTAALADRYRIERELGTGGMATVYLAEDLKHHRKVA
                     IKVLHTDLSATLGPERFLKEIELTASLQHPVILPLFDSGNADGLLYYVMPYIEGETLR
                     ARLDRERQLPVEDAIRIASDVADALEYAHRHGVIHRDIKPENILLQDGRPVVADFGIA
                     LAVQQASGARRMTQTGLSLGTPQYMSPEQAMGEQDLDARTDIFALGAVTYEMLAGEPP
                     FAAPTAQATIARVMAETPRSLHVQRHTVPVAVDTAVLRALEKLPADRFSSAHAFSHAL
                     TAGASAGPLPESGRRKIFTVIGIAAVVVIAIGAGIALARRSAKATAEASASGGAQIVA
                     VLPFHSIASDSAQRYFGDGMTAEISGQLSKLAALRVVSQAASAPYENVSDRLRRMRHE
                     LGVGSVVDGTVRVAGNRIRIDVELMDATNGQTLWSDQYDRDLTDIFAVQSDVAHRIAA
                     ALQAKLTPSEARRVDRPPTANVDAYRIYLQAHAVPVVSSAGAQAAITRMHDAIALDTT
                     FALAYAELAREFMFMAAYTGPAYLDSASVAARTALRLQPDLAYASFVLGDLQASQGHL
                     ADARLSYLRALELDQSLVPAMEDLSEAETTLGHYDQALYWALRAQPLDPNEFHVYYHT
                     GVPLLRLADDQATEDMLDTAVRRFADGPGGPRLQAALAALDFLRGRDSEAMARTRRTA
                     ASNPHDDEVASFLAQLAALTGAPDADALLSTRLLANPESGVDLTPERFPAWHALFTDR
                     RGDHATATRMWDSVLTSDERAIASGNDDPQRPMEIAAIHAVRGDSAAALDWLQRGYNA
                     GWKNYRVITRDPFFASLAQNPRFQQIMTSMRTDTDAMRRRAMTAGNSIVRWSN"
     gene            complement(3863..5320)
                     /locus_tag="VLI40_05300"
     CDS             complement(3863..5320)
                     /locus_tag="VLI40_05300"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSU96624.1"
                     /translation="MVEHHSPLARLLVTLAVGALLPTTQLAAQHTAATTGSRSSHPAT
                     QRSPSWTVRPEWVEAHERFLSSDVMHGRGSATRDEQITATYVASEFMSYGLKPAPGMT
                     GYIQSAEVVSPELAGNATLTVGKVTLKEGDDFQLLVASGAPVSGTLLKVLPESLAQAH
                     AKGAIVMVGGDAQKAMAAASQLIRAGAALVLVPQSPATDALSAQLGGHARVGVRLKDS
                     PRPVAARNLAVLTAAAMARLASENNGAPAALSVQVKPEASPRRTFNAVGYLAGTDPSA
                     GTILLSAHLDHLGIGRPVNGDSIYNGANDDAAGTTAVMELAHALAAGPRLRRSILFVC
                     YGSEEIGELGSTYFGEHPPVPLTSLVANVEFEMIGSQDPKMPKGVLLFTGWDRSNLGP
                     ALKAHGALLGPDPYPEQHFFERSDNYALALQGVVAHTAAGWGTPPTYHQPDDELSRLD
                     IPFMTSAIQSLIDPLRWLATSDFKPAWNAGGRPER"
     gene            complement(5489..>5834)
                     /locus_tag="VLI40_05305"
     CDS             complement(5489..>5834)
                     /locus_tag="VLI40_05305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96625.1"
                     /translation="HSLSPAEQREAVIETGNYGEAGAAEFYAREFDLPPVVSPAGSFW
                     FFGPGNRPGNVLIGLGSDPSDLQRGWSSVRVVARLSRPWSVSEERDRPIYLATEPRMT
                     LQQLWPSLSGRQ"
BASE COUNT         1073 a         1821 c         1857 g         1083 t
ORIGIN      
        1 gcaagtgtga tggactatcc gggcccgctg gtgacattga ggcccaatgg cacgctcgac
       61 gtttcgcacg cctgggcaac cggcactggc gcctacgata cgctggcgat tcgctttgac
      121 tacacacagt acgcgaacgc agccgctgag agcgcgggtc aggaagcgct ggcacggcag
      181 gcgatagcgg gcggcgcgcg ctttctctcg gatcgcgatg catcggcggg cgtatacccc
      241 gaggtgacac gctggttgaa cggcgatgac gccgtcaagg agctcgcgcg cgagagcgcg
      301 gtgcgcgacg ttctcatctc gaagttcaac gaatcggtga tccgacccgg cgatccgatg
      361 tggatgatca acgagcggtt cgtccccgtt tatctgcatc atcgctacgc gatcgaggct
      421 gcgacgaagg cgatcggcgg gatggaatac acgttcgcgc tgcggggcga tggacagaca
      481 ccggcgacag tcgtcgcgcc ggcgaagcag cgggaagcgc tgcgcgagct gatcgcgacg
      541 attcagccgc gcgagctcgc ggtgcctgag cgcatagtga agatgattcc accgtcgccg
      601 tacggatacg gcggtggttg gggcttcgcg acgacgccgg cggggatcgt gtacgatccg
      661 ctggccattg cgcgcgcgct ggcgggcaac gtggccgatg gaattctgca gcctgatcga
      721 atggagcgtg tgatgtcgtt tcatgcacgc gacgccgcat cgccgtcggc cgacgaggtg
      781 atcgggcagt tgatcgacgg cgtctataca aatgcggcag cgacgactgc gtacgagcgc
      841 ggggtccgtc gccaggcgag gcgcgccgtg gtcgacgcgc tgttcgagct ggcggccgat
      901 cagaaatcga cggccgatgt gcaggccgtg gccaacgatc gtttgagtcg cctggcgacg
      961 agtctctcgg ccgcgaagac gaccgacacg gaggatcgcg cggcgaacgc ggaagtcgtt
     1021 cgcaacgtgc ggaactggct ggatcgtcac atcgcaccgc cgcatccgac gggagtgatc
     1081 gagctaccgc cgggaacgcc gatcggggga tgaacgcggg ccggagtggg gacggagtag
     1141 ggacggactc cgtatgaaaa gggcacagga agcgatataa gcctgacccc ggtatccagc
     1201 gccagatggc gaccgtccta gttactccac ctcacgatgg aattccccgc ggtcatcgca
     1261 cgccggcgca tcgcgtccgt atcggtccgc atggatgtca tgatctgctg gaaacgtgga
     1321 ttttgcgcca ggctggcgaa gaatggatca cgcgtgatca cgcgatagtt cttccatccg
     1381 gcgttgtatc cgcgctgcag ccagtcgagc gctgcggctg aatctccgcg cacggcgtga
     1441 atggcggcta tctccatcgg gcgctgcgga tcgtcgttgc cgctcgcgat ggcgcgctcg
     1501 tcagacgtga gtacgctgtc ccacatgcgc gttgccgtcg cgtggtcccc gcgccggtcg
     1561 gtgaacaacg catgccatgc cgggaagcgc tcgggcgtca gatccacgcc tgactcggga
     1621 ttggcgagga gtcgcgtgct caacaacgcg tccgcgtccg gcgctcccgt gagcgccgcc
     1681 agttgtgcca gaaacgacgc gacttcgtcg tcgtgcgggt tgctggccgc agtccggcgg
     1741 gtgcgagcca ttgcctcgct gtcgcggccc cgcaggaaat caagcgcggc gagtgcagcc
     1801 tggaggcgcg gaccacccgg accgtctgca aagcgccgta ccgcggtgtc gagcatatct
     1861 tcggtcgcct gatcatcggc gagcctgagt agcggaactc cggtgtggta atagacgtga
     1921 aactcattgg ggtcgagcgg ctgcgcgcgc aacgcccagt aaagcgcctg gtcgtagtga
     1981 ccgagcgtgg tctcggcttc cgagagatcc tccattgccg gcacgagact ctggtccagc
     2041 tccagcgccc ggagatagga cagtcgtgcg tcggcgagat gtccctgcga agcctgaaga
     2101 tcaccgagga cgaacgacgc gtatgcaaga tccggctgga ggcgcagcgc agtgcgcgcc
     2161 gcgacgctcg cagaatcgag atatgccggc cctgtgtaag ctgccatgaa catgaattca
     2221 cgtgcaagct cagcgtatgc aagagcgaag gtagtgtcga gcgcaatggc atcgtgcatg
     2281 cgcgtgattg cggcctgcgc gcctgcgctg ctcactaccg gaacggcgtg cgcctgcagg
     2341 tagatccggt acgcatcgac attcgctgtg ggagggcgat ccacgcgtcg tgcctcggag
     2401 ggtgtgagct tcgcctgcag cgctgcagca atgcgatgcg cgacgtcact ctgtacggca
     2461 aagatgtcgg tgagatcgcg atcgtactgg tccgaccaga gagtctggcc gttcgtcgcg
     2521 tccatcaact cgacgtcgat acggattcga ttccctgcta cccgtacagt tccatccacg
     2581 acactgccaa cgcccagctc atggcgcatc cggcgcaggc ggtcggacac gttctcgtac
     2641 ggcgctgacg cagcctgact caccacacgc agcgctgcga gcttcgagag ctgcccgctt
     2701 atctcggcgg tcatcccgtc accgaagtat cgctgcgcgc tatctgacgc gatgctgtga
     2761 aagggaagca ccgctacgat ctgtgcacca ccggacgcgc tcgcttcagc cgttgctttc
     2821 gcgcttcgtc gcgcgagtgc aattccagcg ccgattgcaa ttactacaac tgctgcgatt
     2881 ccaataactg tgaagatctt tcgtcgcccg ctctctggta gcgggccggc actggcaccg
     2941 gcagtcagag cgtgactgaa ggcatgcgca ctcgaaaatc gatcggcggg aagtttttcg
     3001 agagcgcgga gcacagcagt gtcgacagcc acgggaacgg tatgacgctg tacgtgcagg
     3061 ctacgcggtg tctccgccat cactcttgca atggtcgcct gtgccgttgg cgcggcaaat
     3121 ggcggctcgc ccgcgagcat ctcgtacgtg acggcgccca atgcaaagat gtccgtgcgc
     3181 gcgtcgagat cctgctcacc catcgcctgt tcgggtgaca tgtattgcgg cgtccccaga
     3241 gaaaggccgg tctgagtcat gcgccgtgcg ccactggctt gctgcacggc gagtgcgatt
     3301 ccgaaatcgg cgacgaccgg acgaccgtcc tggagcaata tattttccgg cttgatgtcg
     3361 cgatggatca caccatgcct gtgcgcgtac tcgagcgcat cggcaacgtc ggatgcgata
     3421 cgtatcgcat cttcgaccgg aagctggcgc tcgcgatcca gtcgcgcgcg cagagtttcg
     3481 ccttcgatgt acggcatcac atagtacagc agcccatccg cattgccgga gtcgaacaat
     3541 ggcaggatca cgggatgctg cagactcgcc gtcagctcga tttccttgag aaagcgctcc
     3601 ggaccgagtg tcgccgacag gtcggtgtgc agaaccttga ttgctacttt acggtgatgc
     3661 ttgagatctt cggcgagata caccgtcgcc atgccacccg taccaagctc gcgctcgata
     3721 cggtagcgat ccgccagcgc ggcagtcagg ctgtgggcgt cgtcgttgat catgagtgcg
     3781 cgagtctttc acgaccgtaa cagtcgcgaa tcggacacat gaacatggct tttgagaagg
     3841 ctttatgcca gtggtgcccc tctcaacgct cgggccgtcc gccggcattc cacgcgggtt
     3901 tgaagtcgct cgtcgcgagc cagcgcagtg gatcgatcag actctggatc gcggatgtca
     3961 tgaacggaat gtcgaggcgc gacagttcat catccggctg gtggtaagtg ggcggtgttc
     4021 cccaacccgc ggcggtgtgc gcaactacgc cctgcagtgc gagggcgtag ttgtccgagc
     4081 gctcgaagaa gtgctgctcc ggatacggat ccggtccgag caacgcgccg tgcgccttga
     4141 gcgctggtcc aagattggat cgatcccatc ccgtaaacag caacacgccc ttcggcatct
     4201 tgggatcctg actgccgatc atctcgaatt ccacatttgc aacgagactc gtcagcggca
     4261 cgggcggatg ctcgccgaag taggtcgagc ctagttctcc gatctcctcg ctgccatagc
     4321 agacgaacag tatgcttcgc cgcagcctcg ggccggccgc gagcgcatgt gccagctcca
     4381 tcacagccgt cgtcccggcc gcatcatcgt tcgcaccgtt gtatatcgag tctccgttca
     4441 ccggacgccc gattcccagg tggtcgaggt gcgcggaaag cagaatcgta cctgccgacg
     4501 gatcggtgcc ggccagatat ccaacggcgt tgaaggtcct gcgcggcgat gcttccggct
     4561 tcacctgtac cgaaagagcc gcaggtgcgc cgttgttttc gctcgcgagc cgcgccatcg
     4621 ctgcggcagt gagtacggca aggttccgtg ctgccacggg tcgcggactg tccttgagcc
     4681 gaacgccgac tcgagcatgg ccgccgagtt gtgcggacag cgcatccgtg gcgggactct
     4741 gcggtaccag cacgagagct gctcccgcac ggatcaattg cgaagccgcg gccatcgcct
     4801 tctgtgcatc gccgccgacc atgacgattg cacccttcgc gtgtgcctgc gccaggctct
     4861 ccggaagaac cttcagaagc gttccgctga ctggagcgcc cgacgcgacg agcagctgaa
     4921 aatcgtctcc ttccttcagc gttaccttgc cgacggtgag cgtcgcgttg cccgcgagct
     4981 caggcgacac cacttcggcg ctctgaatgt atcccgtcat gccgggcgcg ggtttcagac
     5041 cgtagctcat gaactcggac gcaacatacg ttgccgtgat ctgttcatcg cgagtcgcgc
     5101 ttccgcggcc gtgcatgacg tcgctcgaca gaaagcgctc gtgcgcctcg acccactccg
     5161 gtcgcacagt ccagctcggg gacctctgcg ttgcaggatg tgagctgcgt gagcctgtcg
     5221 tcgcagcagt atgttgcgcc gccagctgcg tagtcggcaa cagcgcgcca acggctaacg
     5281 tgaccaacag ccgcgcgagc ggtgaatgat gttctaccat atgttgccgt cccattgctc
     5341 tgactccaat tgcgtttgat tcctgaccat caatctccgc cctggctgca tgccagtcga
     5401 gaagaccgtc accagatata cactccgaac tcggccagcg ccaaacttca catcacgaca
     5461 tcacgcggaa cgcggtagaa cttcggtgtc actggcgacc cgacagcgat ggccacagtt
     5521 gctgcaacgt catgcgcggc tcggtcgcaa gataaatcgg gcgatcgcgc tcctcgctga
     5581 cagaccacgg tcgactgagt cgcgccacta cacgaaccga gctccatccc ctctggagat
     5641 cggacgggtc gcttccgagc cctataagta cgttgccggg acggttgccc ggcccgaaga
     5701 accagaacga tcccgcgggt gagaccactg gcggcaggtc gaactcccgc gcgtagaatt
     5761 ccgcagcacc tgcttcgcca tagttacccg tttcgataac tgcctcgcgt tgctccgccg
     5821 gcgaaagcga atgg
//
LOCUS       DATIMD010000229         2910 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_86843, whole genome shotgun sequence.
ACCESSION   DATIMD010000229 DATIMD010000000
VERSION     DATIMD010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86843"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..353)
                     /locus_tag="VLI40_05310"
     CDS             complement(<1..353)
                     /locus_tag="VLI40_05310"
                     /inference="COORDINATES: protein motif:HMM:NF012966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase domain-containing
                     protein"
                     /protein_id="HSU96626.1"
                     /translation="MSFSPKKIALAYSGGLDTSIIVPWLKERFPGVKVVCVAADIGQG
                     DELSGVKAKAIASGADECYVEDLRDEYVRDFIFPTLRAGAIYGRKYLLGTSMGRPLIA
                     RRQVEVARAVGADALA"
     gene            473..934
                     /locus_tag="VLI40_05315"
     CDS             473..934
                     /locus_tag="VLI40_05315"
                     /inference="COORDINATES: protein motif:HMM:NF014864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96627.1"
                     /translation="MANKRERQNAILETIENHPVVSQEDLRKLLLRRNWDVTQATLSR
                     DLRELRIARVPTAEGARYAVTDGNIEEARVALDTLLPQLFMRIDGVSEMAVLRTVPGG
                     AQPIASALDGEGWPDILGTVGGDDTILIICRSVQARERTVRKIKGLAGEPG"
     gene            complement(1129..2346)
                     /locus_tag="VLI40_05320"
     CDS             complement(1129..2346)
                     /locus_tag="VLI40_05320"
                     /inference="COORDINATES: protein motif:HMM:NF024598.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycoside hydrolase"
                     /protein_id="HSU96628.1"
                     /translation="MIADRRTGAVLSLNARTRIGVVAGCALVLLAACGEPAQSASAAA
                     STSAVSAPAHGSSAPKDSVPRTDAAPPPITYVPHPDTLRGLYVNRWAALGNSMWKLID
                     IAKRTEINALVIDVKDDRGLVLYKSRVPLAQKIGADSNRPMSQRRLAALFDSLRANNI
                     YPIARIVVAKDPLLAGQKLEWAIKRRADGKPWLDKNGHPWLDPTQPAVWQYAIDLARE
                     AHDVGFSEVQFDYVRFPDDDRMVREASFPLAHGRTRAQVIHDQLGAVRDSLKSDKMPM
                     TIDVFGLTATDTTDMGIGQRWEMFIDRADVVLPMVYPSHFAPGTYGLGSPNAHPYTTI
                     DRVLKDMKRRTTGLKNAAAIVPWYQDFTLGPPAYGAAQVRAQIKAGYDNGFYSWILWN
                     PGSKYHTDALEAQ"
     gene            complement(2336..>2910)
                     /locus_tag="VLI40_05325"
     CDS             complement(2336..>2910)
                     /locus_tag="VLI40_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96629.1"
                     /translation="GMTGFHSTISADVVERYPIVQEAAVARADIQRMMNGLSDDERKL
                     VPDVASSADSLYVRIEQLVSAIDNMDRANVPGMGDAIEREITELEAEANPLEEEASEG
                     RVRRLVQLRRQRVSLREMRNRRAAADNKLNRAISAMRQLRMDVGRLSTGTRSYDSVTQ
                     VAEQAVAIGKEVDAVLYAQDEMARVLRRDS"
BASE COUNT          527 a          895 c          947 g          541 t
ORIGIN      
        1 gcgagcgcgt cggcgcccac tgcgcgcgcg acctcgacct ggcggcgtgc gatgagcggc
       61 cggcccatgg atgtgccgag caggtacttg cggccgtaga tggcaccggc gcgcagggtg
      121 gggaagatga agtcgcggac gtattcatcg cgcagatcct cgacgtagca ctcatcggcg
      181 ccggaggcga tggccttggc cttgacgccg gagagctcgt cgccctgtcc gatgtcagca
      241 gctacgcaga ccaccttgac gcccgggaat cgctccttga gccaggggac gatgatcgag
      301 gtgtcgagtc ctccggagta ggcgagggcg attttcttgg gtgagaaaga catggcggtg
      361 ctctgtcagg gtaggaatga aactttatgc gactaacatg tataaatagt cgcgccggca
      421 gggaatcgca actatctggc ccggcctggc ccgggagagc tatcttctgc gaatggccaa
      481 caagcgcgag cggcagaacg ccatcctgga gaccatagag aatcacccgg tcgtaagcca
      541 ggaagatctc agaaagctgc ttctgaggcg aaactgggac gttacgcagg ccacgctttc
      601 gcgagacctg agggagctca ggatagcgcg ggtgccgacg gcggaggggg cgcgctacgc
      661 ggtgaccgac ggcaacatcg aggaggcgcg cgtcgcgctc gatacgttgc taccgcagct
      721 gttcatgcgg atcgacgggg tgagcgagat ggcggtgctg cgaacggttc cgggcggcgc
      781 gcagcccatc gcgagcgcgc tcgacggcga ggggtggccg gacatactcg gcaccgtggg
      841 tggcgatgac acgattctga tcatctgcag atcggtgcag gcgcgcgagc ggacggtgcg
      901 gaagatcaag gggctggcgg gggaaccggg gtaagaggag ctcgtcgccc tgcgaaagcg
      961 ggagcctagc cccgtcattc ccgcgaaagc gggaatccat gttatcgatc tttggattcg
     1021 atggtaccgc aaaccagatc ggcagcagat ggattcccgc tttcgcggga atgacggctc
     1081 ttctgaacat ggattcccaa ggcgcggata caaccatccg ccctacctct actgcgcctc
     1141 cagagcatcc gtgtgatact tgctgcctgg attccagagg atccagctgt agaagccgtt
     1201 atcgtagccg gccttgatct gggccctcac ctgcgccgcg ccgtacgccg gcggcccgag
     1261 tgtgaaatcc tgataccagg gcacgatcgc cgccgcgttc ttcaatccgg tcgttcggcg
     1321 cttcatgtcc ttgagcacgc gatcgatcgt cgtgtaagga tgtgcgttcg gacttccgag
     1381 tccatatgtg cccggcgcga agtgagatgg atagaccatc ggaagcacga cgtcggcgcg
     1441 atcgatgaac atctcccagc gttgcccgat tcccatatct gtcgtgtcgg tcgccgtgag
     1501 cccgaagacg tcgatcgtca tcggcatttt atctgacttg agtgaatcgc gtacggcgcc
     1561 gagctgatcg tggatcacct gagcgcgcgt gcgaccgtgc gcgagcggga atgacgcctc
     1621 gcgcaccatg cgatcgtcat ccggaaagcg cacgtaatcg aactgcactt cgctgaaacc
     1681 aacgtcgtgc gcctcgcgcg cgaggtcgat cgcatattgc cagacagcgg gctgcgtcgg
     1741 atcgagccat ggatggccgt tcttgtcgag ccacggcttg ccgtccgcgc gacgcttgat
     1801 cgcccactcg agcttctgtc cggcgagcag cggatccttc gcaactacga tgcgagcgat
     1861 cgggtagatg ttgttcgcgc gtagcgagtc gaagagcgcg gcaagacggc gctgtgacat
     1921 tggccggttg ctgtctgcgc cgatcttctg cgcgagcggc acgcgcgact tgtaaagcac
     1981 caggccgcgg tcgtccttca catcgatgac gagcgcgttg atctccgtgc gcttcgcgat
     2041 gtcgatcaac ttccacatgc tgttgccgag cgccgcccat cgatttacgt acagcccgcg
     2101 cagtgtgtcg ggatgcggta cgtatgtgat gggcggcgga gcggcgtccg tacgcggaac
     2161 ggaatctttc ggggcactgc tcccgtgcgc aggagccgac accgccgacg tggatgcagc
     2221 ggcgctcgca gattgcgccg gctcgccgca agcggcaagc aacacaagcg cgcatccagc
     2281 tacaactccg attctcgtcc gcgcattcaa tgagagaacg gcgcccgtgc gccggtcagc
     2341 tatcacgccg gaggactctc gccatctcgt cctgcgcata cagcacggca tccacttcct
     2401 tgccgatcgc gaccgcctgc tcagccacct gcgtaacgct gtcgtacgag cgtgtaccgg
     2461 tcgagagacg gccgacatcc atgcggagct gtcgcatggc actgatagcg cggttcaact
     2521 tgttgtccgc agcagcgcgc cggttgcgca tctctcgtag cgacacgcgc tgccggcgaa
     2581 gctgtaccag ccggcggacg cgtccctcgc ttgcctcttc ttccagcgga ttcgcctccg
     2641 cctccagctc tgtgatctcg cgctcgatcg cgtcgcccat gccgggtacg ttcgcgcgat
     2701 ccatgttgtc gatcgcggat accagctgct cgatgcgcac gtacagcgag tccgcggacg
     2761 acgccacgtc cggaacgagc ttgcgctcgt cgtcggacag gccgttcatc attcgctgga
     2821 tgtccgcgcg tgcgactgca gcttcctgca cgatcgggta gcgctcgacg acgtccgcgg
     2881 aaatggtgga atgaaatccc gtcatgccgt
//
LOCUS       DATIMD010000230         2792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_666595, whole genome shotgun sequence.
ACCESSION   DATIMD010000230 DATIMD010000000
VERSION     DATIMD010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_666595"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..292)
                     /locus_tag="VLI40_05330"
     CDS             complement(<1..292)
                     /locus_tag="VLI40_05330"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HSU96630.1"
                     /translation="MDNFGLFYQFHFYLFGIIAIVAAVTFVTRRSPVAAAMWLIVTMF
                     CLAAEYVMLDAQFIAAMQVLLYAGAIMVIFLFVIMLLNLGEASDITDVRGIWG"
     gene            complement(295..789)
                     /locus_tag="VLI40_05335"
     CDS             complement(295..789)
                     /locus_tag="VLI40_05335"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit I"
                     /protein_id="HSU96631.1"
                     /translation="MAITVKRVSRHIEQTSYVKATLQGMALTLKQMFEPKVTIQYPEQ
                     RWELSPRWRGTHRMLTKEDGKARCVACGLCPSVCPSNCIKLVPGEDENGNRYPLVFEI
                     DEFRCIFCGYCQEVCPEDAIHVGQHYENSEYSREGHVYDLERLMAQTHPVSTLWDSTD
                     PKGE"
     gene            complement(789..2063)
                     /gene="nuoH"
                     /locus_tag="VLI40_05340"
     CDS             complement(789..2063)
                     /gene="nuoH"
                     /locus_tag="VLI40_05340"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HSU96632.1"
                     /translation="MHALLQVVDRQAPITGYTTYIIFSIIKLIVVFTVYMVSAALLTL
                     AERKISAWIQGRHGPNRVGGRGGWLQPAADGVKNFMKEETEPGNASHPLFSIAPALSF
                     VPAMLVWCVIPFGSPLPTPWGRVDLVVADLPVGFLFILAIASLGVYGVVLAGWASNNK
                     YSFLGGLRSSAQMVSYEVALGMSTIPIILLAGNVTMSQIIRQQAHSMWNVLNLTTAFV
                     VFFVAALAENNRVPFDLPEAESELIAGYHTEYSAMKFSLFFIAEYANMVTAGALMATL
                     FLGGWDIPFTGWDNAAPYTVLKTVLTLGCFLTKTGFFVFTFIWIRWTLPRFRYDQLMS
                     LGWRVMLPVALGYIALLATTLLVLQAVGINPGPAHSFILLMENICVLLVLFVMVDDGR
                     VISPAYGRAQQARITRLRARSARLAVTEGAGK"
     gene            complement(2069..>2792)
                     /locus_tag="VLI40_05345"
     CDS             complement(2069..>2792)
                     /locus_tag="VLI40_05345"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HSU96633.1"
                     /translation="IEVPLMRRGESLAAADWDVAIPAAAALLDGRRVFVAASPNLSNE
                     TLYLLSQLIRANGGAGAFTVPTGPEAPLPGIPDLSLRADRAANGDGATLLGFKRTGSP
                     LDGIAAGDVLIVADVDAASITPDKLALAAAVIVIGTTLPENLRTAAVVLPIANYAEED
                     GTFTNLRGRVQRFSQAKAAPGMARPSWWVVGDVLAALGKGNAYYLASEVFAAMASDVS
                     AFAGMTYDALGMRGLVVSGGVQ"
BASE COUNT          594 a          854 c          848 g          496 t
ORIGIN      
        1 tgccccagat tccgcgaacg tccgtgatgt ccgaagcctc gcccagattg agcagcatta
       61 tcacgaacag gaagatgacc attatcgcgc ctgcataaag cagtacctgc attgcggcga
      121 tgaactgcgc gtcgagcatg acgtactccg cggccaggca gaacatcgtg acgatgagcc
      181 acattgcagc tgcgaccgga ctgcgccgcg tcacgaatgt aaccgcagcc acaatcgcga
      241 ttattccgaa cagatagaag tgaaactgat agaacaggcc gaaattatcc atgctcactc
      301 acccttgggg tcagtggaat cccacagcgt ggaaacagga tgtgtctgtg ccatcaaccg
      361 ctccaggtcg tacacgtgcc cttctcggct gtactccgaa ttctcgtagt gctggccaac
      421 atggatcgcg tcttcggggc agacttcctg acagtagccg cagaagatgc aacgaaattc
      481 gtcgatctcg aacacgagcg gataccggtt tccgttttcg tcctcacctg gcacgagctt
      541 gatgcaattg gaaggacaga cgctcggaca cagaccgcat gcgacgcaac gcgccttgcc
      601 atcttccttg gtgagcatcc ggtgcgtccc acgccaccgt ggagacaact cccacctctg
      661 ctcgggatac tgaatggtca ccttgggctc gaacatctgc ttgagcgtca gggccatgcc
      721 ctgaagcgta gccttgacgt agctggtctg ttcgatgtgc cggctgaccc gcttgacggt
      781 tatcgccatt atttacctgc tccttcggtg actgccagac gtgcgctgcg cgcgcgtagc
      841 cgggtgatgc gtgcttgttg agcgcgccca taggccggac tgatgacacg gccgtcgtcg
      901 accatgacga agagcaccag cagcacgcag atgttctcca tgagcaggat gaagctgtgc
      961 gccggtccgg gattgattcc gaccgcctgc agcacgagca atgtcgtcgc caacagtgcg
     1021 atgtagccaa gtgcaaccgg cagcatgacg cgccagccaa gtgacatgag ctgatcgtaa
     1081 cggaagcgcg gcagtgtcca gcggatccag atgaaggtga atacgaagaa tccggtcttg
     1141 gtcaggaagc agccgagcgt gagcacggtc ttgagaacgg tgtacggcgc ggcgttgtcc
     1201 catcccgtga acggaatgtc ccagccgccg aggaacaggg tcgccatgag ggcaccggcg
     1261 gtcaccatgt tcgcgtattc ggcgatgaag aacagcgaga acttcatcgc gctgtactcg
     1321 gtgtgatagc cagcgatcag ctccgactcc gcttccggca gatcgaacgg cacgcggttg
     1381 ttctcggcca gcgcggcgac gaagaatacg acaaacgcgg tggtgagatt gagaacgttc
     1441 cacatgctgt gcgcctgctg ccggatgatc tgactcatcg tgacgttgcc ggcaagcagg
     1501 atgatcggga tcgtggacat tccgagcgcg acttcgtacg agaccatctg cgcgctggat
     1561 cgcaatccgc cgaggaacga gtatttgttg ttcgatgccc agccggcgag cacgacgccg
     1621 tacacgccga gcgacgcgat cgcgaggatg aacaggaaac caaccggaag atctgcgacg
     1681 accagatcga ctcttcccca tggcgtgggg agcggcgatc caaatggaat tacgcaccag
     1741 accagcattg cggggacgaa cgacagcgcg ggcgcgatgc tgaacagcgg atgcgacgca
     1801 ttgcccggct ccgtctcttc cttcatgaaa ttcttgacgc cgtcagcggc cggctgcagc
     1861 cagccaccgc gcccaccgac gcgattggga ccgtgcctgc cctgaatcca ggcagagatc
     1921 tttcgttcgg ccagcgtgag caatgccgcc gacaccatgt agaccgtgaa tacgacgatc
     1981 agcttgatga tcgagaaaat gatgtacgtc gtgtagcccg tgatcggcgc ctgccgatcg
     2041 acgacctgga gcagcgcgtg catcggtatc actgtacgcc tccggataca accagaccgc
     2101 gcatgccgag tgcatcgtag gtcatgcctg cgaacgcgga cacatcggac gccatcgcgg
     2161 cgaagacctc gcttgcgaga tagtaggcat tgcccttgcc gagcgcggcc agcacgtcgc
     2221 cgacgaccca ccagctgggc cgcgccattc cgggcgcagc cttggcctgc gagaagcgct
     2281 gcacacgtcc cctcagattg gtgaacgtgc cgtcctcctc cgcataattc gcgattggga
     2341 gcacgaccgc ggccgtgcgc agattttcgg gaagcgtagt accgatcacg attaccgcag
     2401 cagcaagcgc gagcttatca ggagtgatgc tcgcagcgtc cacgtcagcg acgatcaata
     2461 cgtcgccggc agcgatcccg tccagcggcg aaccggtgcg cttgaatccg agcagcgtcg
     2521 ctccatcacc attcgccgcg cgatcggcgc ggagcgagag atcgggaatt cccggcagcg
     2581 gcgcctccgg tcccgtgggg accgtgaatg ctccggcgcc cccgttcgcg cgaatgagct
     2641 gcgacagcag ataaagagtt tcgttggaga gattgggtga cgcggcgacg aagacgcgac
     2701 gtccgtccag cagagccgca gccgccggaa tggcgacgtc ccaatccgcc gccgcgagcg
     2761 actcgccgcg gcgcatgagt ggaacctcga tg
//
LOCUS       DATIMD010000231         6513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4128376, whole genome shotgun sequence.
ACCESSION   DATIMD010000231 DATIMD010000000
VERSION     DATIMD010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6513
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4128376"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VLI40_05350"
     CDS             complement(<1..232)
                     /locus_tag="VLI40_05350"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSU96634.1"
                     /translation="MPDSQSSPRALAAHEVMHRYGGVLALDGASIAVAAARALALVGE
                     SGSGKTTLLRCFNRMVDPDKGTIEVGGIDVRSQ"
     gene            complement(299..1984)
                     /locus_tag="VLI40_05355"
     CDS             complement(299..1984)
                     /locus_tag="VLI40_05355"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU96635.1"
                     /translation="MTERRQGQERRFTDRAADRAEERQLRSIIEQLPDGIVIVGSSGL
                     IRFANPAAEQLFGRSARDLVGTEFGFAIANGSPAEIDVLRPGGETVKAELRVVEIVWE
                     GEPSKVISIRDVTDRRRAEEHARQAERERAARAEAEAANRAKSEFLATMSHELRTPLN
                     AVLGYAQLLEMGVGGTLRPEQQQQVDRILTSGRHLLGLVNEVLDLAKVDAGRLSVQIA
                     PTSADETVDAAATLLRPTAEAVGVALTVTRMDQSSVYYDGDEDRVRQILVNLLSNAVK
                     FTEGGGAVELKYGEANRPDPEARLGSRDGCIFFRVTDTGTGIPSDQLSRIFEPFVQVD
                     SGHTRPNDGSGLGLAISRRLARLMRGDITVHSTVGEGSTFTLWLPSSGETKATATVTE
                     SRGLSRSVSQTHGLGDVGQIILRELDHLMDGFVARVRSECGIPGANTLRFSQIADHVA
                     SYLADIAGVLISLEEVEKQPSSLLADAADIHRLVAARHGTQRARLGWSEAALRCEYRI
                     LGEEIGAVVRPRGASIPPAAFAEASAMIRRLLDQAEQYSVRAFARAKTEEKST"
     gene            2277..2633
                     /gene="kaiB"
                     /locus_tag="VLI40_05360"
     CDS             2277..2633
                     /gene="kaiB"
                     /locus_tag="VLI40_05360"
                     /inference="COORDINATES: protein motif:HMM:NF006798.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circadian clock protein KaiB"
                     /protein_id="HSU96636.1"
                     /translation="MIEHGEGPGTGSHDGSASRYVLKLYVTGKTPNTERAINNLRRIC
                     AEELQGQYEMQIIDVLENPQMAEDDKILATPTLIKRLPPPLRRVIGDLSDKHKVLLGL
                     EVLPDITEHTATPNQS"
     gene            2630..4183
                     /gene="kaiC"
                     /locus_tag="VLI40_05365"
     CDS             2630..4183
                     /gene="kaiC"
                     /locus_tag="VLI40_05365"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF006799.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circadian clock protein KaiC"
                     /protein_id="HSU96637.1"
                     /translation="MTEQNSEPLVQKLPTGIASFDVIAKGGLPANRTTLLSGTAGSGK
                     TVFAMQFLAAGIRDGGEGGVFVTFEESAADIRTNMASFGWDLATWESEGRLAFVDASP
                     DPDIEVIESGSFDLGALLARVQNAVRKVNAKRVSVDSLGAIFSQFSDQSIVRRELFRI
                     ASALKGMGVTAVMTAERTDDYGPIARFGVEEFIADNVMVLRNVLEDESRRRTIEILKF
                     RGTDHQKGEFPFTIVPDGGLIVIPLSAIQLRQKSSDVRTSSGNKELDAMCGGGFFRDS
                     VVLVSGATGTGKTLTVTQFLAGGAANGERCLLLAFEESREQLFRNAIGWGVDFEAMER
                     DGMLRVVCDYPEVNGLEDWLVAIQAIIAEFKPQRVALDSLSALERVGTLKAFREFVIG
                     ITSFIKQQQITGLFTSTTASLMGGTSITETHISTLTDSIILLRYVEMFGEMRRGITVL
                     KMRGSTHDKGIHEFTIDRSGMHLGHPFRNVTGILAGTPVHLSPGDIERVWSMFDAEVS
                     KARRSTDQQ"
     gene            4185..5285
                     /locus_tag="VLI40_05370"
     CDS             4185..5285
                     /locus_tag="VLI40_05370"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU96638.1"
                     /translation="MTSAPLWTPPFRRAAGVVLKSQQIGIIAVLIALGIALTFAAGSH
                     TDVVSGAHINNFLNVYTLVQMGTDASSFAIMGVGATIVIIAGGIDLSVGAIYALAGVG
                     MAMVLRAVGPMGPVATVLVALATCLSIALLCGLANGVMVIGLGVHPFIVTLGTMWVLR
                     GIAFVVSHAESILVPDALTSVAKAQLGLSADLYPVPVLVMLVVAAIGQVYLSRTVSGR
                     YVFAIGGNPEASRYSGLRVDRVKLVVYAISGLSAGIAAFLGASFYGSATSSDANGYEL
                     YVIAAAVVGGASLIGGKGSAISATLGAILIVMIRQAIRTLHLDQNYEWIIIGSALILA
                     VVLDQGGTRLLARRMAAVAPVKDTSTATSEAS"
     gene            5285..6325
                     /locus_tag="VLI40_05375"
     CDS             5285..6325
                     /locus_tag="VLI40_05375"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HSU96639.1"
                     /translation="MKRSRIVSVPFLPGALCVTALLACGGSGGGATKGGASSSSGAKT
                     FTIAMIAKSSTNPVFLSGRTGADSAAKELSKQYGVNVRVDWLTPPSEDATIQAQRIAS
                     AVNSGANAILLSASDAGKLVGAVNEAVDRGVPVMTFDSDVAGSKRFSFYGGDDELIGK
                     QVMQELAKQMNGKGRIAILGGSQNAPNLQKRIDGVKNEAKNYPGITIVNAFYHAETPQ
                     DAAAEVMRAQNAYPGIQGWAMIGGWALFTNALTDLDPGRLKIVSVDALPAELPYVDKG
                     LAPVLLAQPTYLWGYVSVKTIFDHVYLHKEVPPHVQMNLVRVSKDNLGTWARQLKAWG
                     FTDVDPKYLAMK"
BASE COUNT         1264 a         1883 c         2016 g         1350 t
ORIGIN      
        1 gctgagatcg cacatcgatg ccaccgacct cgatcgtccc cttatcaggg tcgaccatgc
       61 ggttgaagca tcggagaaga gtagtcttgc ccgagccgct ctcaccgacg agcgcgaggg
      121 cacgcgctgc agcgacggca atgctcgcgc cgtccagggc gagcaccccg ccgtaccggt
      181 gcatgacctc atgcgccgcg agtgcgcgcg gtgacgattg gctgtcaggc atcgatttcg
      241 cggggttgtc gctcagtgac aggcataaaa ggcaaccaac cgtgagatgg aagccggatc
      301 aggtagactt ctcttctgtc ttggcccgtg cgaacgcgcg aacgctgtac tgttctgcct
      361 gatccagaag tcggcggatc atcgcggacg cctcagcgaa cgcggcgggt ggaatggagg
      421 cgccgcgcgg tcgcacgacc gcgccgatct cctcgcccaa tatccggtat tcgcagcgga
      481 gtgcagcctc ggaccaccct aacctcgcgc gctgagtgcc gtgccgggcg gccacgagtc
      541 tgtggatgtc agctgcatcc gcgagaagac tcgaaggctg cttctcaact tcttccagcg
      601 agatgagcac tcccgcgata tcagcgagat agctcgcgac atgatcagct atctgtgaga
      661 acctgagggt gtttgctccc gggattccgc attcggagcg aactcgcgca acgaagccat
      721 ccatcaggtg atcgagctcg cgcaagatga tctggcccac gtcgccgagc ccgtgggttt
      781 gcgacacaga gcgcgacagg ccccgtgact cggtgaccgt ggcagtcgct tttgtttcgc
      841 cgctggatgg cagccagagt gtaaatgtcg atccctcgcc gacggtgctg tgaaccgtga
      901 tgtctcctcg catcagacgc gcgaggcgcc ggctgatcgc gaggcccagg cctgacccgt
      961 cgttcggtcg tgtgtgaccg gagtccacct gaacgaatgg ctcgaagatg cgcgatagct
     1021 gatcggatgg aatgccggtg cccgtgtctg tcactcgaaa aaaaatgcag ccatcgcggc
     1081 tacccaagcg cgcttccgga tcggggcgat tggcctcacc atatttcagc tcgacagccc
     1141 cgcctccctc ggtgaatttt acggcgttgg agagcaggtt caccagaatc tgtcggacgc
     1201 ggtcttcgtc accgtcatag tatacgctcg attggtccat gcgcgttaca gtaagcgcga
     1261 cgccaaccgc ctctgccgtt ggccgcagga gcgtcgccgc tgcgtcgacc gtctcatcgg
     1321 cggaggtcgg tgctatctgt acgctgagtc gccctgcgtc gaccttcgcc aggtcgagca
     1381 cttcgttgac gagcccgaga agatgccggc cactggtcag aatccggtct acctgctgct
     1441 gctgttcagg acgcagagtg cctccgaccc ccatctcgag taactgggca tagccgagta
     1501 cagcattgag cggcgtacgg agctcgtgac tcatcgtggc cagaaattcg cttttcgctc
     1561 tattggcagc ttccgcctcg gcgcgcgcgg cgcgctcgcg ctccgcctgg cgagcgtgct
     1621 cctccgcgcg gcggcgatct gtgacgtcgc gaatcgagat cactttcgac ggctcgcctt
     1681 cccaaacgat ctccacgact cgcagctcgg ccttaaccgt ctcgccaccc ggacgcagga
     1741 cgtcgatctc ggccggcgag ccattcgcga tggcgaagcc gaattctgtt ccaacgaggt
     1801 cccttgcact tcggccgaat agctgctcgg ccgcagggtt cgcgaagcgg atcagtcccg
     1861 aagacccaac gatgactatg ccatcgggca gctgctcgat gatggagcgt aactgacgct
     1921 cttcagcccg gtccgcagca cggtcggtga acctgcgttc ctgtccttgc ctgcgctcag
     1981 tcattcagtg cgcaggtgcc aggattcggc atgaggagtg acttttggcg gtgatcccgg
     2041 aattcattac gcacgctccg tgctccttac atggccttgt atacccgggc aacagtcaag
     2101 gttcatgccc gagccggtgg ccggttctcc agccggcgat cagacgccca ccggcggtac
     2161 tctcgttaga acgctctttc gcgtggttct ggcgcggacg tattattgaa tctggcatgc
     2221 ccgcagcggc atcttcaaat gggtaaatcg atgtcgcttt tctggaaagg tctggcatga
     2281 tcgagcacgg tgagggtccc gggacaggtt cccatgatgg gtccgcgtcg cgttacgtcc
     2341 tcaagctgta cgtcaccggc aagacgccga acacagagcg ggcaatcaat aacctgcgac
     2401 gtatctgtgc tgaggagttg caggggcaat acgaaatgca gatcatcgac gtgctcgaaa
     2461 atccgcaaat ggccgaggac gacaagatcc tcgccacgcc aacgttgatc aagcggctgc
     2521 caccgccgct cagacgcgtt atcggagatc tttccgacaa gcacaaggta ttgctgggtc
     2581 tcgaggtttt gccggacatt accgagcaca ccgccactcc gaatcaatcg tgaccgaaca
     2641 aaatagcgag ccgctcgtgc agaaattacc gaccggcatt gcaagcttcg atgtgatcgc
     2701 caagggcggg cttccggcga atcgcaccac cttgctttcc ggtacggcag gtagcggcaa
     2761 gactgtcttt gcaatgcagt ttcttgcagc cgggattcgt gacggcggcg aaggcggtgt
     2821 ctttgtaacg ttcgaggaat cggctgccga catccgcact aacatggcga gtttcgggtg
     2881 ggatctggcc acctgggaaa gcgaaggacg tctcgcattc gtggatgcct ctcccgatcc
     2941 ggacatcgag gtgattgaga gcggcagctt cgatctcgga gcattgcttg cacgcgtgca
     3001 aaacgccgtg cgtaaggtca atgcgaaacg tgtctccgtc gactcactgg gcgcgatctt
     3061 ttcgcagttc tccgatcagt cgatagttcg tagagagctt tttcggatag catcggctct
     3121 caaaggcatg ggagtaacag cagtcatgac agccgaacgt accgatgatt acggtccgat
     3181 agcgagattt ggcgtcgagg aattcatcgc cgacaacgtc atggtgctac gtaacgtgct
     3241 ggaggacgag agccgtcgtc gcacgatcga gattctgaag tttcgcggaa ccgaccatca
     3301 gaaaggcgag ttcccgttca cgatcgttcc cgacggtggg ttgattgtca ttccgctatc
     3361 ggcaattcag ttacgacaaa aatcgtcaga tgtgcgcact tcgtcgggga acaaggagct
     3421 cgacgcgatg tgcggcggtg gtttttttcg cgactcggtc gtattggtat cgggcgcaac
     3481 cggcaccggc aagactctca ccgtgactca gtttctggcc ggcggcgccg cgaacggaga
     3541 gcgttgtctg cttctggcgt tcgaggagag tcgtgagcaa ctgttccgca acgcaattgg
     3601 ctggggcgtt gatttcgagg caatggaacg cgatgggatg cttcgcgtgg tgtgcgatta
     3661 tccggaagta aatggcctgg aagactggct ggttgcaatc caggcaatta ttgcggagtt
     3721 caagccacag cgcgtggcac tcgacagtct ttctgcgctc gaacgcgtgg gaacgctcaa
     3781 ggcgtttcgc gagttcgtga tcggaatcac gtcattcatc aagcagcaac agatcacggg
     3841 cctgttcaca tcgaccacgg ccagcctcat gggtggaacg tcgataacgg agactcacat
     3901 ctccacgctg accgattcca taatactgct tcgctatgtc gagatgttcg gcgagatgag
     3961 acgcggcatc acggttctca agatgcgtgg atccactcac gacaagggaa tccacgaatt
     4021 cacgatcgac cggagcggga tgcatctcgg tcatccattt cgaaatgtca ctggcattct
     4081 ggctggtacg ccagttcatc tctcgccggg tgacatcgag cgtgtatgga gcatgttcga
     4141 cgccgaggtg agcaaggcga ggcgtagcac cgatcaacag taacgtgact tctgccccac
     4201 tctggacacc gccattccgc cgagctgccg gcgtcgtgtt gaaatcgcag cagattggga
     4261 tcattgccgt cctgattgcg ctcgggatcg cgttgacgtt cgccgccggc tcgcacaccg
     4321 acgtcgtgag cggcgcccac atcaacaatt tcctgaacgt atacacactc gttcagatgg
     4381 gtaccgacgc cagctctttc gccatcatgg gcgttggcgc gacgatcgtg atcattgctg
     4441 gaggaatcga cctttccgtt ggcgcgatct acgcgctggc cggtgtgggc atggcgatgg
     4501 tactccgagc ggtcggaccg atgggtcccg tcgctacggt gctggtcgcg ctcgcaacct
     4561 gtctctcgat cgcgctgctt tgcgggctcg cgaacggggt gatggtgata ggccttggcg
     4621 tgcatccctt catcgtcact ctgggcacga tgtgggttct ccgaggcatc gccttcgtgg
     4681 tgagccacgc cgagagcatt ctggtacccg acgcactgac gagcgtcgcc aaggcgcaac
     4741 tcggcctgag cgccgatctg tatcccgtgc ctgtgctggt aatgctcgtc gtggcggcga
     4801 ttggccaggt ctatctgagc cgcactgtga gtggacgcta cgtcttcgcg atcggcggta
     4861 acccggaagc cagtcgctac tccgggcttc gtgtggatcg ggtcaagctc gttgtgtacg
     4921 ccatctccgg cctgagcgcc gggatcgcgg cgtttctggg cgcgtcattc tacggatctg
     4981 ccacgtcgtc ggacgcgaac ggctacgagc tgtatgtgat cgcggctgcg gttgtgggcg
     5041 gagcgagtct cattggtggc aagggaagtg caatcagtgc gacgctcggc gcaattctca
     5101 tcgtaatgat ccgtcaggca attcgcacat tgcacctgga ccagaactac gagtggatca
     5161 tcattggcag cgcgctgatc ctcgccgtcg tattagatca gggcggcacg cgtctgctgg
     5221 cgcgtcgaat ggcagccgtc gctcccgtga aagacacatc aactgcaaca tcagaggcgt
     5281 cgtaatgaag cgctcgcgta ttgtttccgt tccatttctt cccggtgcgc tctgtgtcac
     5341 ggcgctgctc gcgtgcggtg gctcgggagg aggtgcgact aaaggtggcg catcgtcctc
     5401 gagcggcgcc aagacgttca cgatcgccat gatcgcgaag agctccacca atcccgtgtt
     5461 cctgtcgggc cgcaccggcg ccgactccgc ggcgaaggag ctgtccaagc agtacggcgt
     5521 gaacgtgcga gtggactggc tcacgccgcc gagcgaggat gcgaccattc aggcgcagcg
     5581 gatcgcgtcg gcggtgaaca gcggcgcgaa cgcgattctc ctatcggcaa gcgatgctgg
     5641 caagcttgtc ggggcggtta atgaagccgt cgaccgcggc gttccggtga tgacgttcga
     5701 tagcgacgtc gcaggctcga agcggttctc gttctacggc ggcgacgacg agctgatcgg
     5761 caagcaggtg atgcaggagc ttgcgaagca gatgaatggc aagggacgga tcgccatcct
     5821 cggcggaagc cagaacgcgc cgaatctgca gaagcgcatc gacggtgtga agaacgaggc
     5881 gaagaattat ccggggatca ccatcgtcaa cgcgttctat catgcggaaa caccgcagga
     5941 tgcggcggcg gaagtgatgc gcgcgcagaa tgcctatccc ggtattcagg ggtgggcaat
     6001 gatcggcggc tgggcgttgt tcacgaacgc gctgaccgat ctggatccag gcagactcaa
     6061 gatcgtttcc gtggatgcgc tgcctgcgga gctgccatac gttgacaagg gactcgcgcc
     6121 ggtactactc gcacagccga cgtatctctg gggctacgtg tcggtcaaga cgatcttcga
     6181 tcacgtgtat ctgcacaagg aagtgccgcc tcatgtgcag atgaatctcg tgcgcgtgtc
     6241 aaaggacaat cttggtacgt gggcgcggca attgaaggcg tggggattta ctgacgtcga
     6301 tccgaaatat ctcgcgatga agtaaatatc tcgttgatcg tcattttcgc gaaagcggga
     6361 acttgggact cgtcattccc gcgaacgcgg gaatccatgt tatcggtctg caagtgcgat
     6421 gatgacgaag gccggtcggt agctcaattt gtcattcccg cgaaagcggg aatccatgtt
     6481 atcgatcttt gagtgcgatg gtagcgcaaa cct
//
LOCUS       DATIMD010000232         2383 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3263546, whole genome shotgun sequence.
ACCESSION   DATIMD010000232 DATIMD010000000
VERSION     DATIMD010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2383
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3263546"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1595)
                     /locus_tag="VLI40_05380"
     CDS             complement(<1..1595)
                     /locus_tag="VLI40_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HSU96640.1"
                     /translation="MAEEALIVRGAREHNLRDVNVTIPRDKLTVITGLSGSGKSSLAF
                     DTIYAEGQRRYVESLSAYARQFLGLMEKPDVDSIEGLSPAISIQQKTAGHNPRSTVGT
                     VTEIYDYLRLLYARAGTPHCPTCGRAVERQSAAQIADTILQWPKDTRIEILAPLVRER
                     KGEFRDLFENARRQGFVRAVVDGDVVELASPPKLNKKLNHSVAIVVDRVVVNRDDRGR
                     LADSVETALKLSDGLVEVKRHDDNSSNLFSEKFGCPDCGTSLTELEPRQFSFNSPFGA
                     CPKCGGLGTRREVSEDLILGDASLTIPEGVVLPWGEPDGYLRRTILPGLARELKFNLD
                     TPWGELPQRTRDALLYGSGGKRGGPRSADIKWEGIISNVQRRYDETESDSVRLDLEQF
                     MTALPCTACGGRRLKPESLAVTIAGVNIGDVVELSVGEAVHFFDDIKVRSGTQPGLDA
                     DIAGPILKEVRERLRFLVDVGLDYLTLGRAAESLSGGEAQRIRLATQIGSRLVGVLYI
                     LDEPSIGLHQRDNARLLATLRQLR"
     gene            1636..1971
                     /gene="cutA"
                     /locus_tag="VLI40_05385"
     CDS             1636..1971
                     /gene="cutA"
                     /locus_tag="VLI40_05385"
                     /inference="COORDINATES: protein motif:HMM:NF015077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HSU96641.1"
                     /translation="MPHSDAVVVLTTVGTEDDAATLVRALLERRLVACGTMLPKARSI
                     YRWDNKVADETEVVLLLKTRSACLDALQASFETLHPYKLPELLVLPVAAGLPKYLSWI
                     ADETGLSIA"
     gene            2091..>2383
                     /locus_tag="VLI40_05390"
     CDS             2091..>2383
                     /locus_tag="VLI40_05390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96642.1"
                     /translation="MLRLEPGTYFYTVYQTGEPIGWASSSLDTGSTGFTSREAVRVRA
                     LIAGDSQTVVASSTAHLTRAFELDTFALSVNGDEHPFTVRQTPPAGSRVLVPSL"
BASE COUNT          418 a          763 c          747 g          455 t
ORIGIN      
        1 cgcagttgcc gcagcgtcgc gagcaaccgt gcgttgtcgc gctgatgcag accgatcgac
       61 ggctcgtcca gtatgtacag cacgccaacg agtcgcgagc cgatctgcgt cgcgaggcga
      121 atgcgctgcg cttctccgcc cgacaacgat tcggcggcgc ggccgagtgt caggtagtcg
      181 agaccgacgt ccacgagaaa gcgcagtcgc tcgcgcactt ccttgaggat tggaccggcg
      241 atgtcagcgt cgagcccggg ttgcgttccc gatcgcacct tgatgtcatc gaagaagtga
      301 accgcttcgc cgaccgacag ttcgaccaca tcaccaatat tgacgcccgc gatagttacg
      361 gcgagcgatt caggcttgag gcgtcgtccg ccacaagccg tgcacggcag cgcggtcatg
      421 aactgctcga gatccaggcg caccgaatcg gattcggtct cgtcgtagcg acgctgcacg
      481 ttggatatga tcccttccca cttgatgtcg gcggagcgcg gaccgccgcg cttaccgccc
      541 gatccgtaga gcagcgcatc gcgcgtcctc tgcggcagct caccccaagg cgtgtcgagg
      601 ttgaacttga gctcgcgcgc aagtccggga agaatggtgc gtcgcagata tccgtccggc
      661 tctccccatg ggagaaccac gccttccgga atggtgaggc tggcgtcgcc gagtatcaga
      721 tcctcgctca cctcgcgacg ggtaccgagt ccgccgcact tggggcacgc accgaacggc
      781 gagttgaacg aaaattgccg cggctcgagt tccgtgagcg acgttccgca atccgggcat
      841 ccgaacttct ctgaaaacag attcgacgaa ttgtcgtcgt gccgtttgac ctcgaccaga
      901 ccgtcggaca gcttgagtgc cgtctccacc gaatctgcga ggcgtccgcg gtcgtcgcga
      961 ttgacgacta cgcggtcgac gacgatggcg acgctgtggt tcagcttctt gttcagcttg
     1021 ggcggcgacg caagctccac gacatcgcca tcgacgacag cgcgcacgaa tccctgccgg
     1081 cgcgcattct cgaacaggtc acgaaactcg ccctttctct cgcgcacgag cggcgcgagg
     1141 atctcgatgc gcgtgtcctt tggccactgc aggatcgtgt cagcgatctg cgccgcgctc
     1201 tgccgctcca cggcgcgacc gcacgtggga cagtgcggtg tgccagcacg tgcgtagagc
     1261 aggcgcaggt agtcgtagat ttcggttacg gtcccgacag tcgaacgcgg attgtggccg
     1321 gcggtcttct gctggatcga tatcgccggc gacaatccct cgatcgagtc gacgtcgggc
     1381 ttttccatca agccgaggaa ctggcgcgcg tacgcggaga gtgattccac gtaccgccgc
     1441 tgcccttcgg cgtagatcgt gtcaaaggcc agtgacgact tgcccgagcc ggacagaccg
     1501 gtgatcaccg tcagcttgtc gcgcgggatg gtaacattga cgtcgcggag attgtgctcg
     1561 cgagcgcctc gaactatcag tgcctcttct gccatagcca tctaaaccta acggacttac
     1621 ggtgtaaatt cgggtatgcc acactccgat gcagtagtag tcctgacgac ggtcgggacg
     1681 gaggacgacg cagccaccct cgtccgggcc cttctcgagc ggcggctggt cgcttgcggg
     1741 acgatgcttc ccaaggcgcg ctccatctac cggtgggata acaaggtcgc cgatgagacc
     1801 gaggtagttc tcctgctgaa gacccgatcg gcctgcctgg acgccctcca ggcgtccttc
     1861 gagaccctgc atccgtataa gctgccggag ctgctggttc tcccagtcgc tgccggcctt
     1921 ccgaagtatc tgagctggat cgctgacgag acgggacttt cgatagcgtg aagctgaccg
     1981 cggaccgccg gttactggca gcggcggttc tagtctgctg gggtatcggg ctagtctggc
     2041 tagtcaggcg ccggcatgat gtctcggacg ccgatcgtct ggcgcagggg gtgcttcggc
     2101 tggagccggg tacgtacttc tacacggttt atcagaccgg cgagccaatc ggctgggcca
     2161 gctcctcgct cgataccggc agtaccggct tcacatcgcg cgaggctgtc cgagtgcggg
     2221 cgctcatcgc cggcgacagc caaaccgtcg tcgcgtcgtc cacggcacac ctcacccgtg
     2281 cgttcgagct cgacacattc gcgttatccg taaacgggga cgagcacccg ttcaccgtgc
     2341 gacagacgcc gccggcgggc tcgcgcgtgc ttgttccttc gct
//
LOCUS       DATIMD010000233         4424 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_88691, whole genome shotgun sequence.
ACCESSION   DATIMD010000233 DATIMD010000000
VERSION     DATIMD010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4424
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88691"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(206..637)
                     /locus_tag="VLI40_05395"
     CDS             complement(206..637)
                     /locus_tag="VLI40_05395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96643.1"
                     /translation="MHISFAVFADAANLSQEGKLNVLGIFDALHVSAFPSMHPRAHFV
                     VRVKGSPADSGTHQLTFRWVNPRDTELWTSSGELAVEAGPTAALEMDLPIIAVVDLPL
                     DAAGQYTMRVELDGEPVARTSVFVNGPAATLPYSTATALVS"
     gene            662..1588
                     /locus_tag="VLI40_05400"
     CDS             662..1588
                     /locus_tag="VLI40_05400"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSU96644.1"
                     /translation="MPDRPKSFGSTDMLLLLMATIWGVNYAVVKYAGLAFGALAFTWM
                     RVLIATLMLLAAVLLQRKQWPSRSDVLRLLGLGVLGNGLYQLLFVFGVSRTRVGSAAL
                     ILASAPAFIALLSWARGVERVSARAWGGIALSVGGVGIVMLGSATGASRQGSLTGALI
                     VFIGVLCWAVYTVGLQPFTHRVDSVQLSALTMAGGMLPLAFATPFAVSSIASAHASAT
                     AWWCVAYSSVISIGVAYLFYYRGIRVLGPTRTSMYSNLQPIVAILTGWVALNEAPTAW
                     QIAGTASIIGGLLLTRASAPAPTLSNATSSSL"
     gene            1566..2258
                     /locus_tag="VLI40_05405"
     CDS             1566..2258
                     /locus_tag="VLI40_05405"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase-like hydrolase"
                     /protein_id="HSU96645.1"
                     /translation="MQHLVLFDIDGTILHSGGAGRDAMEYALATVFGTAGDSSMRYDG
                     KTDKQIVRESMRAAGISDTEIDAHMEQVVSLYVATLPGRLGDPERHVGLYPGVAELIA
                     AVHARDDSVLGLLTGNVESGARLKLAAVGLDFEQFRINAFGSDNEVRGELPAIAHRRM
                     QDAFGVTLGGRDVVVIGDTPADISCGRALGARAIAVATGSYSVDELKAHHPYAVFQDL
                     SDTDVVMAAITG"
     gene            2255..2893
                     /locus_tag="VLI40_05410"
     CDS             2255..2893
                     /locus_tag="VLI40_05410"
                     /inference="COORDINATES: protein motif:HMM:NF014038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class IV adenylate cyclase"
                     /protein_id="HSU96646.1"
                     /translation="MNEPVNKSINKPMNKPMSDPTREVELKARVQDIGVTRRNIENAG
                     ALLVFDGSLHDRIYDTPDRILAARDFVLRLRSYVSPLGVTAHLDWKGPTSREDGFKVR
                     SELTTGVTDPNELAAILDRIGFEIVGRIDRQVVQYEIQNAETDARTVIRFERYPRMDV
                     LVEVEGSPAGIERAIDGLGIPRAMFSADRLSDFVRAFEARTGEKAAVCDQDL"
     gene            complement(2933..3787)
                     /locus_tag="VLI40_05415"
     CDS             complement(2933..3787)
                     /locus_tag="VLI40_05415"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: protein motif:HMM:NF013915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HSU96647.1"
                     /translation="MTHIFASISQNAFTYNIGRFEFTGFGIAMLAAFIIAQIVAQREM
                     WRRGHDPAPISDLVFAAVIGGILGGKIYYAILMGDVGSLFSRAGLVFWGGLIGGIIAV
                     LFVAWRKKMSLLRVADVGGIAVAAAYSIGRTGCWAVGDDYGRPWNGPWAVAFPNGAPP
                     STVENMTRMFHVHFPAGMNPMQVVSVHPTQLYEVVLAFIMFLILWRLRDHAHAEGWLF
                     GLYCVLAGTERFFMEIFRAKDDRFFGPFTTAQVFAVLFVIAGLIIMQLRRDVTERAPG
                     IHAQPRSA"
     gene            complement(3784..>4424)
                     /locus_tag="VLI40_05420"
     CDS             complement(3784..>4424)
                     /locus_tag="VLI40_05420"
                     /inference="COORDINATES: protein motif:HMM:NF013012.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96648.1"
                     /translation="FTALLVSGGHTLLLDVPEWGQYKLLGSTRDDAAGEAFDKVAKLL
                     VLPYPGGRHVEALARDGDPLRFHFSRPMLHRNTPSDDPSYFDVSFSGLKTAVLNAVRG
                     SDDIERDRADIARGFQDALIETLVEKTARAAAMFHRDRVVLGGGVACNHTLIEAMRAR
                     MGVHVEVFAPTPRLATDNAAMIARAGLFRYNHGERASLDHAARATAPLPGQE"
BASE COUNT          869 a         1328 c         1386 g          841 t
ORIGIN      
        1 tgggcggcca acccacgttg cgttatcgct tggcggttcg gagtgcgcac actgttcact
       61 cgcaaatggc ggattcggta tcaacgcgct cgatgcggat gacaccgtag cactcggtct
      121 gcgcgaaaac ttcagattcg cgcggcgcat actgtcatga gatcagaccg cgatcccgcg
      181 gcgcttcaac gcaacgaagc cagcgctacg aaaccagcgc cgtcgcggta ctgtagggaa
      241 gagtagcagc ggggccattc acaaagacgc tcgttctggc aacgggctcg ccgtccagct
      301 cgactcgcat ggtgtactga ccagcggcgt ccagcggcag gtcgacgacc gcaattatgg
      361 gaaggtccat ttcgagcgct gccgtgggac cggcctcgac cgcgagttcg ccactcgaag
      421 tccacaactc ggtgtcgcgt ggattgaccc agcgaaacgt cagctgatgt gtgcccgaat
      481 cggccggact acccttcaca cgcacgacga agtgcgctcg cggatgcatc gacgggaatg
      541 cgcttacgtg caatgcgtca aagatcccga ggacattgag cttgccttcc tgtgacagat
      601 tggccgcatc ggcgaagacc gcaaaggata tgtgcacgac ttaaagatac tagatttgag
      661 gatgccagac cggccaaagt cgttcggatc gacggacatg ctactgctcc tcatggcgac
      721 gatatgggga gtcaattacg cggtagtgaa gtacgccggc ctcgcattcg gcgcgctcgc
      781 cttcacgtgg atgcgcgtgc tcatcgcaac gttgatgctg ctcgcggcgg tactgcttca
      841 acgcaagcaa tggccgagca gatcggacgt gctgcgtctg ctcgggctgg gtgtgctggg
      901 caacgggctg tatcagctgc tgttcgtatt cggtgtatcc cgcactcgcg ttggaagcgc
      961 tgccctcatc ctggcatcgg cgcccgcctt cattgctctg ctcagctggg cgagaggcgt
     1021 ggagagggta agcgcgaggg cctggggcgg aatcgcactg tcggttggcg gagttggaat
     1081 cgtcatgctt ggcagcgcca ctggtgcatc gcggcaggga tctctcaccg gagcgcttat
     1141 cgtcttcatc ggcgttttgt gctgggcggt atataccgtg gggcttcagc ctttcacaca
     1201 tcgcgtcgat tccgtgcagc tgagcgcgct gacgatggcc ggcgggatgc tgccgctggc
     1261 attcgctact ccgttcgccg tttccagcat cgcatcggct cacgcatccg ctactgcctg
     1321 gtggtgcgtc gcgtacagca gcgtgatatc gataggagtt gcgtatctct tctactacag
     1381 gggaatccgc gttctgggac ctacgcggac ctcgatgtac agcaacctcc agccgatcgt
     1441 ggcaattctc acgggctggg tggctctcaa cgaagcgcca actgcatggc agattgccgg
     1501 cacagcttca atcatcggcg gattgcttct gacccgcgcg tcagcgcccg cccctactct
     1561 ctccaatgca acatctagtt ctctttgaca tcgacggtac gatcctccac tccggcggcg
     1621 ctggtcgcga cgcgatggag tatgcgctcg caacagtgtt tggaacggct ggtgattcat
     1681 ccatgcgcta cgacggcaaa accgacaagc agatcgtgcg cgagtcaatg cgcgccgcag
     1741 gaatcagcga cacggagatc gacgcgcaca tggaacaggt cgtttcactc tacgtggcga
     1801 cgcttccagg ccggctcggt gatccggagc gacatgttgg cttgtatccg ggtgtcgccg
     1861 agttgattgc agcggtgcac gcacgcgacg actcggtgct cggtctgctt accggcaacg
     1921 ttgagtccgg cgcgcggctc aaactcgcgg cggtcggact ggacttcgag cagtttcgca
     1981 tcaatgcctt cggctcggac aacgaggtgc gcggagagct accggcgatc gcacaccggc
     2041 gcatgcagga cgcgttcggc gtcacgctcg gcgggcgcga tgtggtagtc attggtgata
     2101 cgcccgccga catctcgtgc gggagagctc tgggcgcgcg cgccatcgca gttgctacag
     2161 ggtcatactc agtggatgag ttgaaggcac accaccccta tgccgtgttc caggatctca
     2221 gcgatacgga tgtcgtgatg gcggcgatca caggatgaac gagccggtga acaagtccat
     2281 aaacaagccc atgaacaagc ccatgagcga tccgacgcgc gaggtcgagc tcaaggcgcg
     2341 tgtgcaggac atcggcgtca cgcggcgcaa catcgaaaac gcgggagcct tactggtatt
     2401 cgatggctcg ttgcacgatc gtatctacga cacgccggat cgcatactgg ccgcacgcga
     2461 cttcgtgctg cggctccgga gctacgtgag cccgctcggc gtcaccgcgc acctggattg
     2521 gaagggtcct acttcccggg aagacggatt caaggtccga tccgagttga cgacgggcgt
     2581 gaccgatccg aacgagctgg cggcgatcct cgatcgcata ggcttcgaga tagtcggtcg
     2641 gatcgatcgg caagtcgtgc aatacgagat ccagaacgca gagacggatg cgcggacggt
     2701 tatccggttc gagcgctacc cgcgaatgga cgttctggtc gaggtcgagg ggtcaccagc
     2761 cggtatcgag cgagctatcg atgggctcgg aatcccgaga gcgatgtttt cagccgatcg
     2821 gctgagtgac tttgtccgtg cgttcgaagc tcggaccgga gagaaagccg ccgtctgcga
     2881 tcaggatctg tagccagatc gatccgatcg cagcccggca agacgctccg ggtcaggccg
     2941 agcgcggttg cgcgtgaatt ccgggtgcgc gctcggtgac gtcgcggcga agttgcatga
     3001 tgatcagtcc tgcaatcacg aacagcaccg cgaatacctg cgccgtggtg aacggtccga
     3061 agaagcgatc gtccttcgca cggaagatct ccatgaaaaa gcgctcggtg ccggcgagaa
     3121 cgcagtagag gccgaacagc cacccttctg catgagcatg atcgcgcaga cgccagagta
     3181 tcaggaacat gatgaacgcg agcactactt cgtacaattg cgtcgggtgc accgatacga
     3241 cctgcatggg gttcatgccg gcggggaagt gcacgtggaa catccgcgtc atgttctcga
     3301 ccgtgcttgg cggcgcgcca tttggaaagg cgaccgccca tggtccattc cacggtctgc
     3361 cgtaatcgtc ccccacggcc cagcaacccg tacgcccgat cgagtaggcg gcggcgactg
     3421 caattccccc aacgtcggcg acgcgcagca ggctcatctt ctttcgccac gcgacgaaca
     3481 gcacggcgat gattccgccg atgagtccgc cccagaatac caggccagcc cggctgaaaa
     3541 gtgagccgac gtcgcccatg agtattgcgt agtagatctt gccgccgagt attccgccga
     3601 tcaccgccgc gaataccaga tcggagatcg gtgccggatc atggccgcgg cgccacatct
     3661 cgcgctgagc cacgatctgg gcaattatga acgccgccaa catggcgatg ccgaatccgg
     3721 tgaattcgaa tcggccaata ttgtacgtaa atgcgttctg tgagatcgaa gcgaagatgt
     3781 gggtcattcc tggccaggaa gtggtgcggt cgctcgtgcg gcatggtcga gcgatgctcg
     3841 ctcaccatga ttataacgga acagccccgc ccgggcgatc attgcggcat tgtccgtagc
     3901 cagccgcggg gtgggtgcaa atacttccac gtggacgccc atccgtgcgc gcatcgcctc
     3961 gatcagcgta tggttgcagg cgacaccgcc tccaagcact acccggtcgc gatgaaacat
     4021 cgccgccgcg cgcgccgtct tttcgacaag cgtctcgatc agcgcgtcct gaaatccacg
     4081 tgcgatatcc gcgcgatcgc gctcgatgtc gtccgagcca cgcacggcat tgagcaccgc
     4141 agtcttgagt ccgctgaacg aaacatcgaa atacgatgga tcgtcgctcg gcgtgttcct
     4201 gtgcagcatg ggacggctga agtggaaacg caatggatct ccatcgcgcg caagcgcttc
     4261 aacgtggcgg ccgccgggat acggcaagac gagcagtttc gcgaccttgt cgaacgcttc
     4321 acccgccgcg tcgtcgcgcg tcgagccgag cagtttgtac tggccccatt ccggaacatc
     4381 gagcaggagc gtgtgcccgc cggagaccag tagcgccgtg aagg
//
LOCUS       DATIMD010000234         4681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2396976, whole genome shotgun sequence.
ACCESSION   DATIMD010000234 DATIMD010000000
VERSION     DATIMD010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4681
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2396976"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1607
                     /locus_tag="VLI40_05425"
     CDS             <1..1607
                     /locus_tag="VLI40_05425"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HRDC domain-containing protein"
                     /protein_id="HSU96649.1"
                     /translation="RPSYLRMRAVREALGDPPTIALTATATPTVRRDIARQLALRDPK
                     VVITGFDRTNLSYSVVPARNDAGKDALLVQVLSDRPGLTVVYAATRKSVERIASMLQR
                     EGISAAAYHAGLDDVHRHEVQEDFMTERVRVIVATNAFGMGIDKANVRAVVHHSMPGT
                     LEAYYQEAGRAGRDGLPSEAILLHAFQDRFTHEYFIKGAYPERELVTRVYTTLQRLAN
                     RSAAISETPEELASSVPGKINARDIESALRVLEQAGATVKAQESASLVRVRLLATPAR
                     IKRELSNTNDAIALGVLRALWRAAGNGLNDGAVVDIAALPSGLGAPMEIQDTLESLEN
                     RQFLTVQHIGGGITLVAPSRDLDSFNFDWKSLDQRRQAELEKLEAVQRYAYAKSCRRA
                     FVLRYFGDPAAGNSCSGCDNCQGTTAPRPPKEEAPRNRSTARTRGGPVPKPARGRVRE
                     ASDAADDLPAPARELFDRLRALRREIAREEEVPAYIVFDDKTLRQIAVHHPRTLSAFG
                     ELRGIGPVKTERFGPRFMAALADDQG"
     gene            1622..2839
                     /locus_tag="VLI40_05430"
     CDS             1622..2839
                     /locus_tag="VLI40_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HSU96650.1"
                     /translation="MDDSFYFSEQHLAVRDTVRGFARDHVAPVAAKLDAEGKFLWDNV
                     KGMGELGLLGVPWPEELGGAGLDLTSYIIAIHEMAKVDASHAITISAHTTLGTSPIVK
                     FGNDAQRKRYVPLLASGKVLGGFGLTEPSAGSDAGGTRSRAEKRGDRYILNGSKIFIT
                     HGGVGEIFVVTAVTDPSRGTKGISSFILTKPTTDLETAAKIGIGHDDSLPAMKGFRSG
                     KKEDKLGWRSSDTRELVFEDVEVPEENLLGNEGEGFTNFMQTLDSGRIGIGALSLGIA
                     EGAYEQALRYASERKQFGKPIADFQGVQFQLSDMATEIEAGRHLVFHAAWLSQHGKPF
                     GKEAAMAKLFCSELAMRATTKAVQIHGGYGYTKDYPVERMMRDAKICEIGEGTSEIQR
                     LVIGRHILRGLTA"
     gene            2836..3381
                     /locus_tag="VLI40_05435"
     CDS             2836..3381
                     /locus_tag="VLI40_05435"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HSU96651.1"
                     /translation="MTLSEVAKTLRIPLGFVLGIAYVIFARPTMGSLVLGGAIALIGV
                     LVRAWASGHINKNERLATSGPYAHTRNPLYFGSFLIAAGFAVAAHWSLLVAVVVFFLL
                     IYYPTMRREIVNIEGRFPDAYARYATNVPLFFPRPAPWRGDSDSMNRFDAGLYMKHGE
                     WKAGLTYVLAMIWLAFRTVHT"
     gene            3489..>4681
                     /locus_tag="VLI40_05440"
     CDS             3489..>4681
                     /locus_tag="VLI40_05440"
                     /inference="COORDINATES: protein motif:HMM:TIGR00757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HSU96652.1"
                     /translation="MKREILINAAARETRIAILEDDRLVELLVDRPDNRRMIGDIYVG
                     KVEAVLPGIQAAFVNIGTEKSAFLHASDVQADDSDDDSDPDDHDDDEAEPTNGNGGGN
                     GHGNGNGGNGRRGKVPPIQDALKRGQDILVQVTKEPISTKGPRVTAQISLAGRFLVYI
                     PDGGTKVGVSRKIGAGAERQRLKEMVRGFLPEKVGGVIVRTVSEDVTPDMLKRELESL
                     ISQWKRIKKKTRFVRAPAVIHRETGLTRGLVRDLFSAKVDSLTVDSKQVFNEIVDYLE
                     DIAPDLIPRVKLHSEEPPLFDKFEIESEIRDIFKRRCDLPSGGYLIIEPTEALVSIDV
                     NSGRYTGKKDPEQTVLKTNMEAAAEVARQLRLRDVGGIIVTDFIDMESKSNRDKVLQE
                     IRNHLS"
BASE COUNT          905 a         1444 c         1492 g          840 t
ORIGIN      
        1 tccggcccag ctatctgcgg atgcgagccg tgcgcgaggc gctcggtgat ccgcccacca
       61 ttgcactcac cgcgaccgcg actccgacgg taaggcgcga cattgcgcgg cagcttgcgt
      121 tgcgcgaccc gaaggtcgtg atcaccggct tcgaccgcac caatctgagc tattccgttg
      181 ttcccgcacg caacgatgca ggcaaggacg cgttgctggt gcaggtgctg agcgatcgac
      241 ccggtctcac agtcgtgtac gcggcgactc gcaaatcggt ggagcgcatc gcgtcgatgc
      301 tgcagcgcga agggatttcc gcagccgcgt atcacgcggg gctggacgac gtccatcggc
      361 atgaagtgca ggaggatttc atgacggagc gcgtgcgcgt cattgtcgcg accaatgcat
      421 tcggaatggg aatcgacaag gcgaatgtcc gcgccgtcgt gcatcactcg atgcccggca
      481 cgctcgaagc gtactaccag gaagcgggcc gcgcgggccg tgacggactt ccatccgagg
      541 cgatcctgct gcacgcgttt caggacaggt tcacgcacga gtatttcatc aagggtgcgt
      601 atccggagcg cgagcttgtc acccgtgtct atacgacgct gcaacgtctt gccaaccggt
      661 ccgcagcaat atcggaaaca ccggaagagc tggcgagctc cgtgccgggc aagatcaacg
      721 cgcgcgacat cgagagcgct ctgcgcgtgc tcgagcaggc aggcgcaacc gtaaaggcgc
      781 aggaatctgc gtcgctcgtg cgagtgcggc tgctggcgac tcccgcgcgt atcaagcgtg
      841 agctttccaa caccaatgac gcgatcgcgc tcggtgtcct tcgtgcgctc tggcgcgccg
      901 cgggcaacgg cctgaacgac ggcgcagtag tcgacatcgc cgcgctcccg tcgggacttg
      961 gcgcgcccat ggagattcag gacacgctgg aatcgctgga gaatcgccag ttcctgacgg
     1021 tgcaacacat cggcggcggt atcacgctcg tcgcgccgtc gcgcgacctc gacagtttca
     1081 atttcgactg gaaatcgctg gaccagcggc gccaggcgga gctcgagaag ctcgaagcgg
     1141 tgcagcgcta cgcgtacgcc aagagctgcc gccgcgcgtt cgtcctcagg tatttcggcg
     1201 atcctgcggc tggcaacagc tgctccggat gcgacaattg ccagggtacc acggcgcccc
     1261 gtccgccaaa ggaagaagcg ccgcggaacc gatcaaccgc ccggacccgc ggcggacccg
     1321 ttccaaagcc ggcccgcggc cgagtgcgtg aagcatccga tgcggccgac gatctccctg
     1381 cgccggcacg cgaactgttc gatcgcctcc gcgccctcag acgcgaaatt gcgcgggagg
     1441 aagaggtccc tgcctatatt gtgttcgacg acaagactct ccggcagatt gcggtgcacc
     1501 atccgcgcac tctctcggcg ttcggtgagc tgcgcgggat tggaccggtc aagaccgagc
     1561 gcttcggtcc gcggttcatg gcggcgctcg ccgacgatca gggataacac aacacgatcc
     1621 aatggacgat tccttctact tctccgaaca acatctggcg gtacgtgata ccgtccgcgg
     1681 attcgcgcgg gatcacgtcg caccggttgc agcgaagctc gacgccgaag gaaagttcct
     1741 ctgggacaac gtcaagggaa tgggcgagct cggcctcctc ggtgtaccat ggccggaaga
     1801 gcttggcggc gcgggcctcg atctcacctc ctacatcatc gccatccacg agatggccaa
     1861 ggtcgacgca tcgcacgcga tcacgatctc ggcgcacacc acgctcggca cgtcaccgat
     1921 cgtcaagttc ggtaacgatg cgcaacgcaa gcgctacgtt ccgcttctgg cgtccggaaa
     1981 agtgctcggc ggcttcggcc tcaccgagcc atcggcggga agtgacgctg gcggtacgcg
     2041 gtcgcgcgcc gagaagcgcg gcgatcgcta catattgaac ggatccaaga tcttcattac
     2101 gcacggtggc gtcggcgaga ttttcgtcgt caccgcggtg accgatccgt cccgcggaac
     2161 caagggaatc agctcgttca ttctcaccaa gccgactaca gatctcgaga ctgcagccaa
     2221 gatcggaatc ggacatgatg actctctccc cgcaatgaag ggattccgct cgggcaagaa
     2281 agaggacaag ctcggctggc gttcgtccga tacgcgcgag ctggtgttcg aagatgtcga
     2341 ggtccccgaa gagaatcttc tcggcaacga gggcgagggc ttcaccaact tcatgcagac
     2401 gcttgactcg gggcgcatcg gcatcggcgc gctgtcgctt ggaatcgccg aaggggcata
     2461 cgagcaggcg ctcagatacg cgtcggagcg gaagcagttc gggaaaccga tcgcggattt
     2521 ccagggcgtg cagttccagc tctctgacat ggcgaccgag atcgaagccg gccggcatct
     2581 cgtatttcac gcagcgtggc tgtcgcagca cggcaagccg ttcggcaagg aagcggcgat
     2641 ggccaagctg ttctgctccg agctggcgat gcgtgcgacg acaaaggccg tgcagatcca
     2701 cggcggctac ggctacacca aggactatcc ggtcgagcga atgatgcgcg atgccaagat
     2761 ctgcgagatc ggcgagggca cgtcggagat tcagcggctc gtgatcggcc gtcacattct
     2821 gcgtgggctc accgcgtgac gctttcggaa gtcgccaaga cacttcgcat accgctcggc
     2881 ttcgttctcg gaattgcata cgtcatcttc gcgcgcccga ccatgggttc gctggtactt
     2941 ggcggcgcga tcgcgctgat tggcgttctg gtgcgcgcat gggcgtcggg acacatcaac
     3001 aagaacgagc gcctcgccac cagcggtccg tacgctcata ctcgaaatcc attgtacttc
     3061 ggcagcttcc tgatcgccgc tggatttgcc gtcgcggcgc actggagtct gctcgttgcg
     3121 gtcgtcgttt tcttcctgct gatctactat cccacgatgc gccgggagat cgtgaacatc
     3181 gaggggcgtt ttcccgacgc gtatgcgcgt tatgcgacca atgtgccgct attcttcccg
     3241 cggccggcgc cgtggcgggg cgattccgac tccatgaacc ggttcgatgc cggcctctac
     3301 atgaagcacg gggagtggaa agccggccta acttacgttc tggcaatgat ttggctggcg
     3361 ttccggaccg ttcacacgta gctttataga tgttggcgcc ggctactccg gcgccccagt
     3421 ctatttctct tttggaccgc gccaaggcgg ggaccctgta acacgatccc gggcctgcgt
     3481 gggctacaat gaaacgtgaa atcctcataa acgcggctgc gcgcgagacg cgcatcgcga
     3541 ttctggagga cgaccgcctc gtagagctgt tggtcgaccg tccagataac cgccgaatga
     3601 tcggcgacat ctatgtaggg aaggttgaag ctgtccttcc cggtatccag gcagccttcg
     3661 tcaatatcgg gacggagaag agtgccttcc tccacgcgtc cgacgttcag gcggacgact
     3721 ccgacgacga ctcggacccc gacgaccatg acgatgacga agccgagccg accaacggca
     3781 atggcggcgg aaacggtcat ggtaacggca acggcggcaa cggccgccgc ggcaaggttc
     3841 caccgatcca ggacgcgctc aagcgcgggc aggacattct ggttcaggtt accaaggagc
     3901 cgatctcgac caagggtccg cgcgtaaccg cgcagatctc gctggcggga cgcttcctgg
     3961 tgtacatccc tgatggtggc accaaggtcg gtgtgagccg gaagatcggc gcgggcgccg
     4021 agcgtcagcg gctcaaggag atggtccgcg gctttctgcc cgagaaggtg ggcggcgtga
     4081 tcgttcgcac ggtgagcgag gacgtgacgc cggacatgct caagcgcgag ctcgagtcgc
     4141 tgatatcgca gtggaagcgg atcaagaaga agacgcggtt cgtgcgcgcg ccggcggtga
     4201 tccatcgcga gaccggtctt acgcgcggtc tcgtgcgcga cctgttcagc gccaaggtcg
     4261 attcgctgac cgtggattcc aagcaggtct tcaacgagat cgtggactac ctggaggaca
     4321 tcgcgccgga cctgattccg cgcgtgaagc tgcactccga ggagccgcct ctcttcgaca
     4381 agttcgagat cgagtccgag atcagggaca tcttcaagcg tcgctgtgat ctgccttccg
     4441 gcggctatct gatcatcgag ccgaccgaag cgctggtgtc gatcgacgtg aactccggcc
     4501 gctatacggg caagaaggac ccggagcaga ctgttctcaa gaccaacatg gaagccgccg
     4561 ccgaggttgc gcggcagctg aggttgcgcg acgtgggcgg gatcatcgtc acggatttca
     4621 tcgacatgga gagcaagtcg aaccgtgaca aggtgcttca ggagatccgg aatcatctct
     4681 c
//
LOCUS       DATIMD010000235         4278 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2397584, whole genome shotgun sequence.
ACCESSION   DATIMD010000235 DATIMD010000000
VERSION     DATIMD010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4278)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4278)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4278
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2397584"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..436)
                     /locus_tag="VLI40_05445"
     CDS             complement(<1..436)
                     /locus_tag="VLI40_05445"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 family protein"
                     /protein_id="HSU96653.1"
                     /translation="MIAVAAVVPSLAFAQRPGTSAPRGAKQAPGSATSSIREQTADQQ
                     VMQVLNRLAFGPRPGDAAMVRSIGVDAWLDQQLHPERINDDAMDQMLARYPLLQQDQA
                     ALAMQYATAQRQFRLVKRDTANRSVAQDTDMSALKEMRRSHAQ"
     gene            complement(597..1994)
                     /gene="lpdA"
                     /locus_tag="VLI40_05450"
     CDS             complement(597..1994)
                     /gene="lpdA"
                     /locus_tag="VLI40_05450"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HSU96654.1"
                     /translation="MNNCDVLIIGGGPGGYVAAIRAGQLGLNTVCVEMDKTLGGTCVN
                     VGCIPSKALLTSTEHLEFAKLHAAEHGVKIEGVSADLGVMMKRKLDVVAQNTKGIEFL
                     FRKNKVTWAKGRGTLRAGNVVDVTANDGTVTQYQARDVIIATGSVPIELPFFKFDEER
                     VLSNTGALTIPAVPKHLIVIGGGVIGLELGSVWRRLGAKVTVVELAATILPGMDEDVV
                     KEADKIFRKQGLELRPATRVTGGRRDGNKVFVDIEKDGAKETLEGDYVLVAVGRKPVL
                     SGIDAPGLGLTLGARGEIAVDAQMRTNLPNVYAIGDVVGGKLLAHKAEEEGVIAVEVI
                     AGHKVHMDYKSMPAIVYTHPEIATCGLAEHEVKLSGRAYKTGKFPMSANGRARTMAET
                     QGFVKFVSDAETEEILGCHIVSVDAADLLQEVVLAMEFRGTSDDIGITVHPHPTLSES
                     VKEAALGVSGRSIHI"
     gene            complement(1991..2590)
                     /locus_tag="VLI40_05455"
     CDS             complement(1991..2590)
                     /locus_tag="VLI40_05455"
                     /inference="COORDINATES: protein motif:HMM:TIGR00730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HSU96655.1"
                     /translation="MIGERTRVAVYCGANAGLSPSFAEAARALGDGLARNGIGVVYGG
                     ASRGLMGILADAALAAGGEVIGVLPRSLGHRELAHKGLSELHIVETMHERKARIVDMS
                     DAFAVLPGGIGTMDEFFETFTWAQIGIHSRPIALIDVDGFHQPLLAHLRNCVAAGFLS
                     QERLDSLLVYKEVEDFLKFLSMGAVPAAVAPRYSALTGS"
     gene            complement(2587..3876)
                     /gene="odhB"
                     /locus_tag="VLI40_05460"
     CDS             complement(2587..3876)
                     /gene="odhB"
                     /locus_tag="VLI40_05460"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HSU96656.1"
                     /translation="MIALKVPPLGESIVEATVSRWVKQQGEAVNSGDTVLELDTDKIT
                     VEVPALRAGVLVKQAVKEGDVVHVDDVLGEIDETATAAAAPTAPAARPAAPSAPAPAA
                     APQPAPAAPPSPPTAPAATGGPQKSSPAARQVAEARGVDIGAVQGTGRGGVVSKPDVL
                     AVQPQAQAIQPATQPPTQPAAPSGPPALRSAPTPLSPGERETREKLSTRRKRIAENLL
                     QSHLATAHLTTFNEIDMSAVSSLRERVKEKIEKQYGVRLSFMPFFVRAACIALRDYPV
                     VNAQLDGDEIIYKNYVNMGIAVASEQGLVVPNIKDADRKGLLEISRDITAVAKKARDV
                     KLTMDDLTGGSFTITNGGVFGSLVSTPIINYPQVGILGLHKIQDRPVAIDGKVEIRPM
                     MYVALSYDHRIIDGQAAVLFLVRVKELMEDPATMLIE"
     gene            3927..>4278
                     /locus_tag="VLI40_05465"
     CDS             3927..>4278
                     /locus_tag="VLI40_05465"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HSU96657.1"
                     /translation="MRALTISAHGGIEQLELRDALPAPEPAPGEVRIRVLAAALNHLD
                     LFVLKGLPGATITPPWIIGADAVGIADGTDDLVVVNPGLSDGTCDYCRRGEQSLCVRF
                     RLLGEHAPGTIADYI"
BASE COUNT          750 a         1426 c         1248 g          854 t
ORIGIN      
        1 gttgcgcgtg cgaccggcgc atctccttca acgcgctcat gtccgtatcc tgcgctacgc
       61 tgcggttggc ggtgtcgcgc ttgacaagac gaaattgcct ctgtgccgtc gcatattgca
      121 tcgcgagcgc ggcctggtcc tgctgcagca aaggataccg tgcgagcatc tggtccatcg
      181 catcgtcgtt gatgcgctca ggatgcagct gctggtctag ccacgcatcg acgccgatcg
      241 accgcaccat tgcggcatcg cccggccgcg gcccgaatgc gagtcggttg agcacctgca
      301 tcacctgttg atctgcagtc tgctcgcgaa tgctggatgt tgcggacccg ggcgcttgct
      361 ttgctccgcg aggagcgctc gtacccggtc gctgcgcgaa cgcaagcgac gggacgaccg
      421 ctgcgactgc gatcatgcgt cgcgctgccg ctgatcgcca gagtgatgag atagtggtca
      481 cacccctttg acgaccggcc gcagactccg ttaaagaccc tgttgaaccg ggctatgtgc
      541 gaatgcgcac actaggccgt tggtcattac cgcgacggat gctctagacg gatgcgctag
      601 atgtgtatcg aacgccccga gactccgagc gccgcttcct tcacggattc cgacagcgtc
      661 ggatgcggat gcaccgtgat cccgatgtcg tcactcgttc cgcggaactc catcgcaagc
      721 accacttcct gcaacaggtc cgcggcgtcc accgaaacga tgtggcagcc gaggatctcc
      781 tcggtctctg cgtccgacac gaacttcacg aagccctgcg tttccgccat cgtccgcgct
      841 cgtccgttcg ccgacatcgg gaacttgcca gtcttgtacg cgcgtccgct cagctttact
      901 tcgtgctccg cgaggccgca cgtcgcgatc tccggatgag tgtacacgat ggcgggcatg
      961 gacttgtaat ccatgtgcac cttgtggccg gcgatgacct ccaccgcgat cacgccttct
     1021 tcctctgcct tgtgcgcgag cagctttcca ccgacgacgt cgccgatcgc atacacgttc
     1081 ggcagattcg tgcgcatctg tgcgtccaca gcgatctcgc cgcgcgcgcc gagcgtgaga
     1141 ccaagcccgg gagcgtcgat tccgctcaac accggcttgc gtccaaccgc gacgagcacg
     1201 taatcgcctt ccagcgtctc cttcgcgccg tccttctcga tgtcgacgaa gaccttgttg
     1261 ccgtcgcgcc gtccaccggt aacgcgcgtc gcgggacgaa gctccagtcc ctgcttgcgg
     1321 aagatcttgt ccgcttcctt cacgacgtcc tcgtccatgc ccggcaggat cgtcgccgcg
     1381 agctcgacaa ccgtcacctt cgcgcccagc ctccgccaca ccgagcccag ctcgagcccg
     1441 atcacgccgc cgccaattac gatcaggtgc ttcggcactg cgggaatcgt cagcgcgccg
     1501 gtgttcgaca gaacacgctc ctcgtcgaac ttgaagaagg gcagctcgat cggcaccgaa
     1561 ccggtcgcta tgatcacgtc gcgcgcctga tattgcgtaa cggtgccatc gttcgcagtc
     1621 acgtcgacga cgttgcccgc gcgcagcgtt ccgcgcccct tggcccacgt caccttgttc
     1681 ttgcgaaaga gaaactcgat tcctttcgta ttctgcgcaa cgacgtcgag cttgcgcttc
     1741 atcatcacac ccaggtccgc gcttacgcct tcgatcttaa cgccatgctc agcggcgtga
     1801 agtttcgcga actcgagatg ctcggtcgat gtgagcagcg ccttggacgg aatgcatccc
     1861 acgttgacgc aggtgccgcc gagcgttttg tccatctcga cgcacactgt gttgaggcca
     1921 agttgtccgg cgcggatcgc ggcgacgtaa ccaccaggtc cgccgccaat tatcagaacg
     1981 tcacagttat tcatgatcca gtcagcgcag agtaccgcgg cgcaaccgcc gccgggaccg
     2041 cgcccattga gagaaatttg aggaaatcct cgacttcctt atacaccaga agcgagtcca
     2101 atctttcctg cgataggaat ccagccgcga cgcaattgcg cagatgcgcg agcagtggtt
     2161 gatgaaatcc atccacgtcg atcagcgcga tcggcctgga gtgaataccg atctgcgccc
     2221 acgtgaacgt ctcgaaaaac tcgtccatgg ttccgattcc acctggaagg accgcgaacg
     2281 cgtcggacat gtcgacgata cgcgccttgc gctcgtgcat cgtctcgacg atgtgaagct
     2341 cgctgagacc cttgtgagcc agctcgcggt gtccgagcga gcgcggcaac acgccgatga
     2401 cctcaccgcc ggccgcgagt gcggcgtcgg ctagaatccc catcagtccg cgcgacgcac
     2461 caccgtacac aactccgatc ccgttccgcg caagcccgtc gcccaacgca cgtgcggcct
     2521 ctgcaaaact cggcgacaac cccgcgttgg ccccgcagta aaccgctacg cgggtccttt
     2581 cgccgatcat tcgatcaaca tcgtggcggg gtcttccatc aactccttca cgcgcacgag
     2641 gaacagcacc gcagcctgcc catcgatgat gcgatggtcg tacgacagcg cgacgtacat
     2701 catcggccgg atctcgacct tgccgtcgat cgcgaccggc cggtcctgaa tcttgtgaag
     2761 gccgagaatg ccgacctgtg gatagttgat gatcggagtc gaaaccagcg agccgaacac
     2821 gccgccgttc gtgatcgtga aggatccacc agtgagatca tccatcgtca gcttcacgtc
     2881 gcgcgccttc ttcgcaacgg cggtgatgtc gcgcgatatc tcgagcagtc ccttccggtc
     2941 tgcgtccttg atgtttggaa ccaccagtcc ctgctcggac gcgaccgcga ttcccatgtt
     3001 cacataattc ttgtagatga tctcgtcgcc atccagctgt gcattgacga ctggataatc
     3061 gcgcagcgcg atgcaggctg cacgtacgaa gaacggcatg aacgagagcc ggacaccgta
     3121 ctgcttctcg atcttctcct tgacgcgctc gcggagcgag ctgaccgcgc tcatgtcgat
     3181 ctcgttgaac gtcgtcaggt gcgccgttgc aagatgtgac tggagcaggt tctcggcgat
     3241 ccgcttgcgg cgcgtcgaca gcttctctcg tgtctcccgc tcacccggac tcaatggagt
     3301 gggcgcggag cgaagcgcgg gcggtcccga tggggccgct ggctgtgtcg gtggttgtgt
     3361 cgctggctga attgcttgag cctgcggttg gacagcgagc acatccggct tgctcaccac
     3421 gccaccgcgt cccgtcccct gaaccgcgcc aatatcgact ccgcgcgcct cggccacctg
     3481 acgcgctgcc ggtgaagact tttgcgggcc gcctgtcgcg gcaggtgccg tgggcggtga
     3541 aggcggcgca gcgggcgccg gttgcggcgc agctgcaggt gccggcgcgg aaggcgccgc
     3601 tggcctggca gcgggagcag tgggagcggc ggcagcagtc gccgtctcgt cgatctcgcc
     3661 aagcacatcg tccacatgga cgacgtcgcc ttcctttacg gcctgtttta ccaggacccc
     3721 ggcgcgaagt gcaggcactt cgacggtaat cttgtcggtg tcgagctcca gcacggtgtc
     3781 gccggagttg accgcttcgc cctgctgttt gacccagcgc gatacggtcg cttcaactat
     3841 ggattccccg aggggcggaa ctttcaaagc gatcatttcg agtatcttga tgtttgtccc
     3901 taaatatatc ccttcactga gtacacttgc gcgcgctgac aatctccgcg cacggcggca
     3961 tcgaacagct cgagctgcgt gacgccctgc cggctccgga gccggcaccg ggcgaagtcc
     4021 gcattcgcgt tctcgccgca gcgctgaatc atctcgacct gttcgtcctg aaaggcctgc
     4081 caggagctac catcactccg ccctggataa ttggcgctga tgcggtcggt atcgcggacg
     4141 gaacagatga tctcgtggtc gtgaacccgg gtctcagcga cggcacttgc gattactgcc
     4201 gccgcggcga gcagtctctg tgcgtccgct tccgcctgct tggtgagcac gcgcccggca
     4261 ccatcgcgga ctatatag
//
LOCUS       DATIMD010000236         8991 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2978058, whole genome shotgun sequence.
ACCESSION   DATIMD010000236 DATIMD010000000
VERSION     DATIMD010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8991
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2978058"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..1519)
                     /locus_tag="VLI40_05470"
     CDS             complement(101..1519)
                     /locus_tag="VLI40_05470"
                     /inference="COORDINATES: protein motif:HMM:TIGR00797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HSU96658.1"
                     /translation="MPEGTDVIVPSTHGFWETVRESLRGSHHDYTRGSIPRAILLLAV
                     PMVLEMVLESVFAVTDVFFVGKLGADAVATVGLTESLLTVLYAMAMGLSIGVTAMVAR
                     RIGEHDVEGARDAAVQGVIIGLVIAIVLGVAGVILAPRLLGIMGASPQVIAIGSNFTR
                     VMLGGDVSVVLLFLANAVFRGAGDAAIAMRVLWLANAINIVLGPCLIFGLGPFPAFGV
                     TGGAIATTIGRGTGAVYALSRLVRGRGKIAVARKDVRVKPTLMGKLITLSAAGTFQMI
                     IGMASWIGLVRIVSTYGSDALAGYTIGVRLIVFALLPSWGMSNAAATMVGQALGANDP
                     DRAERAVWRAAAYNTLFLTAIGLLFVVAATPIVSIFTSDPLVAGYAVDCLRTVSYGFL
                     LYAGGMVLTQAFNGAGDTWTPTVLNLLVFWVFEIPLAYFLAKTLNMGPHGVFLAITIS
                     FSALTIISAVVFRLGRWKRRKV"
     gene            1674..3020
                     /locus_tag="VLI40_05475"
     CDS             1674..3020
                     /locus_tag="VLI40_05475"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSU96659.1"
                     /translation="MTDAKAAPVIAETGLVRAMGVRALGANTVNSVIGSGIFVLPAVV
                     AATLGASAIIAYIVCAIAAGLIALSFAEAGSRVSAPGGLYAYIETAFGPFTGFLSGVL
                     FWCSQTVSSAAVAMVLVGSLAALMPALAAPIPHAALLIVLYAALAAFNIRGVRTGASI
                     VEALTAAKLLPLILLVVVGAFFVRPVNLEWSFTPTFSQIGSASLLLIFAFQGVENALT
                     SSGEVINPSRTVPRAILLGLAAVSVLYIAIQLVAQGVLGPQLASNQTAPLVGVANQAF
                     GSAGGALLAVAAAVSAFGYLSGDMLTTPRILFAFGRDGFLPARFGSVHPRHHTPVIAI
                     IAHAGICAAFALTGTFTSLVVLSTVSMLLIYLACCLAVIQLRRRDVRTDGPPFVLRGG
                     PVIPLLACVVVVWMLSSASRIEFISVGVVLVIAIVLYAIRQNLAGKPAAATSIRES"
     gene            complement(2998..3783)
                     /locus_tag="VLI40_05480"
     CDS             complement(2998..3783)
                     /locus_tag="VLI40_05480"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HSU96660.1"
                     /translation="MMYENAWTRSTTFVAAALLLAGCAKTSNQANAVADSTRAVASTT
                     DTGTHSAGAGGMAAALDSAGWHALFDGTSLAAFRGYKADSVPAGWHIVDSTLTKSGSV
                     GDLITRDKFGDFELALDWKLGPAGNSGIMYRVTEEYDHPYWSGPEYQLLDDAGAPDGK
                     LRVTAAGSDYALYPAPAGVVKPADQWNSTLIVVKGNHVQHWMNGQKLLEYDLLSPDWE
                     AKVKASKFGAWPNYGRAKTGYIAIQGDHPGVLALRNIKIRELK"
     gene            complement(3804..5342)
                     /locus_tag="VLI40_05485"
     CDS             complement(3804..5342)
                     /locus_tag="VLI40_05485"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HSU96661.1"
                     /translation="MTDHDVTRRDFLAGTGKLALGAMVAPRYMAAETRRRSPGSTLNV
                     AIVGFGGQGSVNAEALAEVCNIVAICDVDVDRMILKKVTDPDGKGTPARLRLEAQLKK
                     SVRYTDFREMLAKQHDIDGVVVATPDHQHAVIAKAAMEAGKHVYVQKPLTASVHESRV
                     LRELALANPKLVTQMGNQGHSGEGARLINEWIQAGIIGQVREVHVWTNRPKGYWPQAV
                     PRPSKSKPPVEYPDDGFGTELGQRRLDDAVAYSMGSYPVPDGLRWDLYLGGIPEDIPY
                     HPIYHPFNWRGWLDYGVGALGDMGAHLIDQPYWALGLTYPTSIEATSTPWGVMEMPEP
                     ARLTASSRPKMRQVSYPLATTVHYQFAARGTQPPVKLTWYDGGLYPPRPDALPDDVSL
                     KSNGVIFVGERGILMNDTYGQNPRLYPVSLMADAALVPKTYERIPWGHEVNWAKACMG
                     QATPSSPFEYSARLTETMLLGIVALRTGQGRKLLYDGEQMLVTNIPEANQYLRREYRA
                     GWSV"
     gene            5547..7211
                     /locus_tag="VLI40_05490"
     CDS             5547..7211
                     /locus_tag="VLI40_05490"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HSU96662.1"
                     /translation="MRSNKHLPAGRALTCSVLAALLVSLPLYAQGQSASTGPRFEISF
                     TGQAHSGPVTGRVYVAISRLADTAGTPITRTGETGDPLFGVNVENLAPGQAAIIDASA
                     FGHPVRSLRDIPAGRYRVEPFVNVYTKFARADGHTVWMHMDQWEGQNWKRSPGNIYGD
                     PVVITYDPRSTKPIKLVADKVIPPVTVPADNEYVKRIKIQSAILTRWWGHPIYFGATV
                     LLPKDYDKHPGVKYPVVYDEGHFSLRAPGGFGSTSGPGAKFTSYWLADGTPRVILVTL
                     QHPSPYYDDSYGVNSANNGPYGDAIMKELIPAVETKFRVEREPWARLLTGGSTGGWIA
                     LAHQVMYPDFYGGTWALCPDGVDFRYFQIVNIYADTNAYWLNAGSWTRLERPDSRKPD
                     GNITAMMKDENWSELSIGDHARSGGQWDIWQATYGPVGADGYPVPIWDKKTGVIDRKV
                     AEYWKEHYDLRNILETNWSTLGPKVANRINVYVGDADTYFLNMGVHKLDEFLKQAKNP
                     TPTGEVVFQPMAPHCWGPPLPDLITKMTAHMEKYAPAGADLRSWRY"
     gene            7346..7801
                     /locus_tag="VLI40_05495"
     CDS             7346..7801
                     /locus_tag="VLI40_05495"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HSU96663.1"
                     /translation="MQPRFNMAVDPGAYRAMSELEKYIHQTSLEVPLIHIVKLYASII
                     NHCAYCIDMHWKDLRALGETEQRLYGLPAWREAPYYTDRERAAFIWTEAVTVVTDGFI
                     SDEAYEAVKAHFSEKEIAELTMVLVTINGWNRLSIAARTTPGTYQPKKQ"
     gene            7820..8770
                     /locus_tag="VLI40_05500"
     CDS             7820..8770
                     /locus_tag="VLI40_05500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96664.1"
                     /translation="MKRSMICACFISLSPLMNFAAAQTPAAPVAVDTTPVHDTAANHP
                     VVHECDAAKPAWIFCDDFETNRLGRYFEYSHPDSSFERADSVGVLGSFGMHVRFRKGQ
                     VDAGSLKLALGKTPSSYMRPVDSGATVYRELYWRVYLRNDSTWTGGGGDKLSRALSLV
                     TPSWAEAMGAPVWSGGKGVPESNYLVIDPFSGTDATGTIVTTTYNDFPHLRWLGALRG
                     ATPIFDQAHVGKWYCIEAHVRLNDPGQSNGVFQLWIDDWLEASRSDLNWVGKFVDYGL
                     NAVFFENYWNAGSPVEQSRYMDNIVVSTERIGCGRLIGAN"
     gene            complement(8799..>8991)
                     /locus_tag="VLI40_05505"
     CDS             complement(8799..>8991)
                     /locus_tag="VLI40_05505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96665.1"
                     /translation="ADWQPLAPKLVAEVSYDHFSGDRFRHGTSFVRWRPDKAPRQCTM
                     EQVKPPVANVSRMLRAPKR"
BASE COUNT         1703 a         2748 c         2713 g         1827 t
ORIGIN      
        1 ccgagctcat gcctcagtcc ctgatgtgga tgatacttga caaagtcaac taattacttg
       61 ccgttgtcaa gtatcgccct tgccgccagc ccaaccgccg tcacaccttg cgccgcttcc
      121 accgtccgag tctgaacacc accgcgctga tgatcgtgag cgccgagaat gagatggtga
      181 ttgcgaggaa cacgccgtgc gggcccatgt tcagtgtctt cgcaagaaag tatgcgagcg
      241 gaatctcgaa cacccagaac acgagcaggt tcagtactgt gggagtccac gtatcgccgg
      301 cgccgttgaa cgcctgcgtc agcaccatcc cgccggcgta cagcaggaac ccgtacgaaa
      361 cggtccggag acagtccacc gcgtatcccg caaccagagg atcgctcgtg aagatgctga
      421 caatcggcgt ggccgcgacc acgaacagca gtccgatggc cgtcaggaac agcgtgttgt
      481 acgccgcggc ccgccatacc gcccgttccg cacggtccgg atcgttcgcg ccgagcgcct
      541 ggcccaccat ggtggcggcg gcgttgctca ttccccacga cgggagcagt gcgaagacga
      601 tcaatcgcac accgatcgtg taacctgcga gcgcgtcgct accgtacgtc gacacgatcc
      661 gcacgagccc gatccagctc gccattccga ttatcatctg aaacgtgccg gccgccgaca
      721 gcgtgatgag cttgcccatc agcgtcggct ttacacgcac atccttgcgg gccaccgcga
      781 tctttccgcg cccgcgaacc agtcgcgaca gtgcgtacac ggcgccggta ccgcgcccga
      841 tcgtcgtcgc tatcgcgcca ccggtcacgc cgaacgccgg aaacgggccc agtccaaaga
      901 tcagacacgg tccgagcacg atgttgattg cgttcgccag ccacagaacg cgcatcgcta
      961 tcgcagcgtc gcccgcgcca cggaacacgg cattcgcaag aaacagcagc accacactca
     1021 cgtcgccgcc gagcatgacg cgcgtgaagt tcgatccgat cgcgatcacc tggggcgatg
     1081 cgcccatgat accaagcagc cgcggcgcca gtatcacgcc agcgacgcca agcacgatcg
     1141 caatcacgag accgatgatg actccctgca ctgccgcgtc tctcgcacct tccacgtcgt
     1201 gctcgccgat gcggcgcgcg accatcgccg tgactccgat ggacagcccc atcgccattg
     1261 cgtacagaac ggtcagcagc gattcggtga gtccaaccgt cgcgacggcg tccgcaccga
     1321 gcttgccgac aaagaaaaca tcggtgacgg caaagacgct ctcgagtacc atctcgagca
     1381 ccatcggcac ggcgagcagg agaatcgctc gcggaatgct ccccctggtg tagtcgtggt
     1441 gtgatccacg caacgactcg cgcacggtct cccagaatcc gtgcgtgctc ggaacgatga
     1501 cgtctgtacc ttcgggcatc gcgcaaatta atcgaggcgg catttccggt gaagcgtcga
     1561 tttacgttcg acagtacggt accgacctat ttcgccgtat ccgtatccat gcgccggatg
     1621 tatgttggag ccgctgcaag ggccagaacg acattccccg actcggagcc ggtatgacgg
     1681 acgcgaaagc tgcacctgtg attgcagaga cggggctggt ccgcgcgatg ggagtgcgcg
     1741 cgctgggcgc caacactgtc aacagcgtca tcggatcggg catcttcgtt ctgccggcgg
     1801 ttgtcgcggc gacgctcggc gcttctgcaa tcatcgctta tatagtttgc gcgatcgccg
     1861 ccggcctcat cgcactgagc ttcgccgagg cagggagccg ggtgtcggcg ccgggcggac
     1921 tctacgctta tatagagacc gcgttcggac cgtttactgg attcctctca ggcgtgctct
     1981 tctggtgcag ccagaccgtc tccagcgcgg ccgtcgcgat ggtgttggtc gggtctcttg
     2041 cggctctcat gcctgcactt gccgcgccga tcccgcacgc cgcattgttg atcgtgctct
     2101 atgcagcact cgcggcgttc aacatccgtg gggtgcgcac cggtgccagc atcgtggaag
     2161 cactcacggc ggccaagttg ctgccgttga ttctgcttgt cgtggtggga gcgttcttcg
     2221 tgcggcccgt gaatctggaa tggagcttca ctccgacatt ttcgcagatc ggttccgcgt
     2281 cgctgttgct catcttcgca tttcagggag tcgagaatgc gctcacatcc agcggcgagg
     2341 taatcaatcc atcgcgcacg gtgccgcgcg cgatcctgct tggactcgcc gccgtttcgg
     2401 tactctacat agcgattcag ctggtagcgc agggagtgct tggaccgcag ctggcgagca
     2461 atcagaccgc gccgctggtg ggcgttgcca atcaagcatt cggatcagct ggcggtgcgc
     2521 tgctcgcagt ggcggcggcc gtgtcggcgt tcggatattt gagtggcgac atgctcacaa
     2581 ctccgcgaat tctgttcgca ttcggcaggg atgggtttct gccggcgcgc ttcggctcgg
     2641 tgcatccacg acatcataca cctgtcattg cgatcatcgc gcatgccgga atatgcgctg
     2701 cattcgcgct cacggggacg ttcacctcgc tggtggtgct gtcgaccgtt tccatgctgc
     2761 tcatctatct cgcctgctgc ctcgccgtga tccagttgcg ccggcgggac gttcggactg
     2821 acgggccgcc gttcgtgctg cgcggcggtc ccgtcattcc tctgcttgcg tgtgtcgtcg
     2881 tggtgtggat gttgtccagc gcatcgagaa tcgaattcat cagcgtcggc gtggtcctgg
     2941 tgatcgcgat cgtgttgtac gcgatacgcc agaaccttgc tggaaagccg gctgctgcta
     3001 cttcaattcg cgaatcttga tgttacggag tgcgagtacg ccggggtgat ctccctggat
     3061 cgcgatgtaa ccagtttttg cgcgcccgta attcggccac gcgccgaatt tgctcgcctt
     3121 gaccttcgct tcccagtccg ggctcagtag atcgtactcg agcagcttct ggccgttcat
     3181 ccagtgctgc acatgatttc ccttgacgac gatgagagtg gaattccact gatccgcagg
     3241 cttcacgacg ccggctggcg cgggatacag ggcgtaatcc gatcctgcgg cggtgacgcg
     3301 gagcttgccg tccggtgcac ctgcgtcgtc gagcagctga tattccggtc cgctccagta
     3361 cggatggtcg tactcttcgg tcacgcgata catgatgccg gagttgcctg caggtccgag
     3421 cttccagtcc agagcaagct cgaagtcgcc gaacttgtcg cgcgtgatga gatcgccgac
     3481 actgcctgac ttggtgagcg tgctgtcgac gatgtgccag ccggctggaa cgctgtcggc
     3541 tttatatccg cgaaaagcgg cgagcgacgt tccatcgaac aacgcgtgcc atccagcgga
     3601 atcgagtgcg gcagccatgc ctccagctcc tgcactgtgc gtgcccgtat cagtcgtcga
     3661 tgcaaccgcg cgggttgaat cggcgactgc attcgcctga ttggaagtct tcgcgcatcc
     3721 cgcgagcaac agtgcagctg caacgaacgt tgtggagcgt gtccacgcat tttcgtacat
     3781 catgacccct tgattgtttg aatttagacc gaccagccgg cgcgatattc gcgccgcaga
     3841 tactgattcg cttccggtat gttagtcacc agcatctgct cgccgtcgta cagcaacttc
     3901 cgtccctgac cggtgcgcag tgcgacgatg ccgagcagca tcgtctccgt gaggcgcgca
     3961 ctgtactcga acggcgagct cggcgtcgcc tgccccatgc aggccttggc ccagttcact
     4021 tcgtgacccc acggaatgcg ctcgtaagtt tttggcacga gcgcagcatc tgccatgagc
     4081 gacacgggat acaagcgcgg attctgtccg tacgtgtcgt tcatgagaat tccgcgttcg
     4141 ccgacgaata ttactccgtt tgatttgagc gatacgtcat caggcaacgc atccgggcgt
     4201 ggcggataca gtcctccgtc gtaccatgtc aacttcactg gtggttgtgt accgcgcgcg
     4261 gcgaactggt agtgcacggt agttgcgagc ggatacgaga cctgtcgcat cttcgggcga
     4321 ctgctggccg tcaatcgtgc gggctcgggc atctccatca cgccccacgg cgttgacgtc
     4381 gcttcgatgc tcgtcggata cgtcaatcca agcgcccagt agggttgatc tatcagatgc
     4441 gcacccatgt cgccgagtgc gccgacgccg tagtcgagcc aaccgcgcca gttgaacgga
     4501 tggtagatcg ggtgatacgg aatgtcttca gggatgccgc cgaggtagag atcccagcga
     4561 aggccatccg gtaccggata cgaacccatg gagtatgcga ctgcatcgtc gaggcgacgc
     4621 tgacccaatt ccgtgccgaa tccgtcgtcc ggatactcga ctggcggctt ggatttggac
     4681 ggccgaggga ccgcctgcgg ccagtagccc tttggccggt tggtccacac gtgaacttcg
     4741 cgcacctgac cgattattcc agcctgaatc cattcgttga tgagtcgtgc gccctcgccg
     4801 gagtggccct ggttgcccat ctgagttacg agtttcggat tcgcgagcgc caactcgcgc
     4861 agcactcgcg actcgtggac cgatgcagtc agcggcttct ggacgtacac gtgcttgccg
     4921 gcttccatcg ctgcctttgc gatcactgca tgctggtgat ccggcgtggc aactacgact
     4981 ccatcgatgt cgtgctgttt cgccagcatc tcgcgaaagt cggtgtatcg caccgacttt
     5041 ttcagctgag cttcgagccg gagtcgcgct ggagttccct tgccgtcggg gtcggtgacc
     5101 ttcttgagaa tcatccggtc cacgtccacg tcgcagatcg cgacgatgtt gcaaacctcg
     5161 gcgagcgcct ccgcgttcac ggatccctgg ccgccgaagc cgactatcgc gacgttcagc
     5221 gtgctgcctg gagatcgccg cctcgtttcg gcggccatgt agcgcggtgc aaccattgcg
     5281 cccagcgcca gcttgccagt tccagcgagg aagtctcgcc tggtgacgtc gtgatctgtc
     5341 atatgatgat cggaatgcgg gtttgtgagt tctccgggac cgcccgaaga tggcaaacaa
     5401 accgacgttt cggaatgggg tcgggtccgg cccgcggttc gtacaccggt cctgcttgca
     5461 cttagcgaat tcacgcggag tccgtcccca ctccgtcccc actccgtccc tactccgtcc
     5521 ccactccggc ccctgtagat tcgcgcatgc gctcaaacaa acacctaccg gccggacgcg
     5581 cgctcacttg ctccgtgctc gcggctcttc tggtttcgct cccgctgtac gctcaaggac
     5641 aaagcgcgtc tactggaccg cgtttcgaga tttcgttcac cgggcaggct cattcgggcc
     5701 cggtcacggg acgggtttac gtcgcgatca gccgccttgc cgacaccgcc ggcacgccga
     5761 tcacgcgaac cggagagacg ggcgatccgc tgttcggagt caacgtcgag aatcttgcgc
     5821 ccggtcaggc cgcgatcatc gatgcctccg cgttcggtca tccggttcgg agtctgcgcg
     5881 acattcccgc aggcagatat cgtgtcgagc cattcgtgaa cgtctacacg aaattcgcgc
     5941 gcgctgacgg gcacacggtg tggatgcaca tggatcagtg ggaaggccag aactggaagc
     6001 ggtcgcctgg caacatctac ggcgatcccg ttgtgatcac ctacgatccg cgatcgacaa
     6061 agccgatcaa actcgtcgcg gataaggtga ttccgcccgt caccgtcccc gccgacaacg
     6121 agtacgtgaa gcgcatcaag atacagagcg cgattctcac caggtggtgg ggacatccga
     6181 tttatttcgg tgcgaccgtg ctgttgccga aggattacga caagcatccc ggcgtgaaat
     6241 acccggtggt gtacgacgag ggccatttct cgctccgcgc gccgggagga ttcggaagta
     6301 cttcagggcc tggcgcaaaa ttcaccagct actggcttgc cgacggaacg ccgcgtgtga
     6361 ttctcgtcac gctgcaacat ccgtcgccgt actatgatga ttcatacggt gtgaattccg
     6421 cgaacaatgg tccgtacggc gacgcgatca tgaaggagct cattccggcg gtcgagacga
     6481 agttccgtgt cgagcgagag ccgtgggcgc gactgctcac tggcggctcg actggtggat
     6541 ggatcgcgct cgcgcatcag gtgatgtatc ccgatttcta cggtggaacg tgggcgctct
     6601 gtcccgacgg agtggacttt cgctacttcc agatcgtcaa catctacgcc gacaccaatg
     6661 cgtactggct gaatgcggga agctggacca ggctggagcg tccggattca cgcaagcctg
     6721 atggcaacat cacggcgatg atgaaggacg agaactggtc cgagctctcc atcggcgatc
     6781 acgcgcgctc gggtggccag tgggacatct ggcaggcgac gtacggtccc gtcggagctg
     6841 atggatatcc cgtgccgatc tgggacaaga agaccggtgt catcgacaga aaggtcgccg
     6901 agtactggaa ggagcattac gacctgcgca acatcctgga gacaaactgg agcacacttg
     6961 gtcccaaggt tgcgaacagg atcaacgtgt acgtcggcga cgccgacacg tacttcctga
     7021 acatgggcgt gcacaagctg gacgagttcc tcaagcaggc gaagaatccc acgccgaccg
     7081 gtgaggtggt gttccagccc atggcgccgc actgctgggg ccctccgctg ccggatctca
     7141 tcacgaagat gaccgcacac atggagaaat acgcacccgc gggtgcggat ctccggagct
     7201 ggcggtattg attgtgtgcg taacggctac ggagcgccgg cggaacattg ccggagcagt
     7261 actgcagcag tactgccatc gaatagttgt tattcttcca tggtaggaaa cgttgcacac
     7321 agttcaaccg atggaaggag atcatatgca gccgagattc aacatggcgg tagatcctgg
     7381 agcttaccgc gccatgtccg agctggagaa gtacattcat cagaccagcc tggaagtgcc
     7441 gctgattcat atcgtcaagc tttacgcgtc gataatcaat cactgcgcgt attgcatcga
     7501 catgcactgg aaggacctcc gcgcgcttgg cgagacggag cagcgtctgt acggactccc
     7561 cgcgtggcgt gaagcaccgt actacacgga tcgcgagcgc gctgcattca tctggacaga
     7621 ggcagtgacg gtcgtgactg atggttttat ttccgatgaa gcgtacgaag ctgtgaaggc
     7681 gcacttctcg gagaaggaga tcgcggagct tacgatggtg ctggtgacga tcaatggatg
     7741 gaaccggctc agcatcgcgg cacgtacgac tcctggcacg taccagccaa agaaacagta
     7801 gccacacgga gatagcgaga tgaagcgatc gatgatctgc gcgtgcttca tctcgctgtc
     7861 tccgttgatg aatttcgcgg cagcgcagac tcccgccgcg ccggtcgccg tggataccac
     7921 acctgtacac gacacggcag cgaatcatcc ggttgttcac gagtgcgatg ctgcgaaacc
     7981 ggcatggata ttctgcgacg acttcgagac gaacagactc ggtcgttact tcgagtactc
     8041 gcatcccgat tccagcttcg agcgcgccga tagtgtggga gtgctcggat cgttcggcat
     8101 gcatgtgcgc ttcaggaagg gccaggtaga cgcaggctcg ctgaagctcg cactcggcaa
     8161 gacgccgtca tcgtacatgc gccctgtcga tagcggcgcg acggtgtatc gcgagctgta
     8221 ctggcgcgtg tatctgcgca acgattcgac gtggacaggt ggtggtggcg acaaattgtc
     8281 gcgtgcgctg tctcttgtga caccgtcgtg ggccgaagcg atgggagcgc cggtgtggtc
     8341 gggcggcaag ggcgttccgg aatcgaacta tctcgtcatc gatccatttt ccggaaccga
     8401 cgccaccggc acaatcgtca cgacgacata caacgacttt ccgcatctgc gctggctcgg
     8461 cgcactgcgc ggcgctacgc cgatcttcga tcaggcacac gtggggaagt ggtactgcat
     8521 cgaggcccac gttcggctca acgatcccgg acagtccaac ggtgtgttcc agctgtggat
     8581 cgatgactgg ctcgaagcga gccggagcga tctcaactgg gtcggaaagt tcgtcgatta
     8641 cggactgaac gcggtgttct tcgagaatta ctggaatgcc ggatcgccgg tggagcagag
     8701 tcggtacatg gataatatcg tcgtcagtac cgagcggatc gggtgcggga gattgatcgg
     8761 ggcgaattga cgaacggtac ctgacccgca catggatctt atcgtttcgg cgctcgcaac
     8821 attctcgaca cattggctac cggcggcttt acctgctcca tcgtacactg acgcggcgcc
     8881 ttgtccggac gccagcgcac gaaactcgtc ccgtggcgga agcgatcgcc ggagaagtga
     8941 tcgtagctga cttccgcgac gagctttggt gccaaaggtt gccagtccgc a
//
LOCUS       DATIMD010000237         2545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4714984, whole genome shotgun sequence.
ACCESSION   DATIMD010000237 DATIMD010000000
VERSION     DATIMD010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4714984"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..710)
                     /locus_tag="VLI40_05510"
     CDS             complement(<1..710)
                     /locus_tag="VLI40_05510"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU96666.1"
                     /translation="MTRLVSGVRGVLVVDDSAFMRKLIAEMIDAHPDFRVIGFARDGV
                     DAMTQVGRLDPDIITLDLEMPRLDGLRVLRRIMTESPRPVVVLSAGGAQYGDATLRAL
                     ELGAVDFVRKPSGPVSLDLPIVRERLIAALGAAARATLAPPPAVVTDREGNAATVRSA
                     QDSLPESTRTYVAAAQLIVIASSTGGPRALAEIVPQLPAGLPAAVVIAQHLPSEFTAA
                     LADRLARASRICVREAEDG"
     gene            complement(707..1543)
                     /locus_tag="VLI40_05515"
     CDS             complement(707..1543)
                     /locus_tag="VLI40_05515"
                     /inference="COORDINATES: protein motif:HMM:NF013867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008983 - protein-glutamate
                     O-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HSU96667.1"
                     /translation="MTLDRLSHPGVDDGFRDLAEKITRESEFRCTNYKDGCVRRRIAV
                     RMRARGAATYAQYGCLLDSDSSEYERLIDTLTVNVTRFFRNPNTFAVAAQHVIPELWR
                     RVPHIDVWSAGSASGEEAYSLAALFYQHARATGELHRFARVTVLGSDIDRWSLDAANR
                     ATYLPASFTDTAPELLDDLFPQVGDRRTVLPSIRAITRFERRDVLRDPPDARSFDLVA
                     CRNVVIYLDRATQEALVDSIFDSLRPGGYLIMGHVETIFGRARRHLVPVDLRERIYRK
                     PL"
     gene            complement(1540..>2545)
                     /locus_tag="VLI40_05520"
     CDS             complement(1540..>2545)
                     /locus_tag="VLI40_05520"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSU96668.1"
                     /translation="EWALIAKKIPTFDIVYAMDRHRMMAIERELTPEEEKLVPLVDGQ
                     RDVSALIAESRLGEFVTAKTLYGLLMTGYMIRVGVSTRARLPARADDKATEHRNLGVA
                     FYKTGMYEESQREFRRVDALRENDPEASFYLGLVALRQEQWPAAAHAFERYVTQQQAS
                     RPAVFVNLAYAYEQMGDMDRARAAMADALSHGGRGDPLVQTNAAAMAVVARDYETADA
                     ALASARTLWGTRRPPPVWFHYAGLAAAMVNDLDRAIALLSEAVQVYPSYAVLWNNLAV
                     AYEARGDFDDALRTVERGLIEDSTLPQLHRNFADSLQRDGRFDEAREAYRRAHHLDAL
                     "
BASE COUNT          479 a          838 c          788 g          440 t
ORIGIN      
        1 ccatcctcgg cttcacgcac acagatccgg ctggcgcgcg caaggcggtc agccagcgca
       61 gcggtgaact ccgacggcag atgttgcgcg atcacgaccg cggccggaag accagctggg
      121 agctgcggta cgatttccgc cagcgcacgc gggccgcccg tcgacgacgc gatgacgatc
      181 aactgcgccg cggcgacgta agtgcgtgtg gactccggta acgagtcctg tgcggaccgc
      241 accgttgcag cgttgccttc gcggtcggtg acgacagccg gtggcggcgc aagcgttgcg
      301 cgggctgcgg cgccgagagc cgctatcagg cgctcgcgaa caatcggcag atcgagactc
      361 acaggtcccg aaggtttccg cacgaagtcg acggcgccga gctcgagtgc acgcagcgtg
      421 gcatcgccgt actgagcacc gcccgcgctc agcaccacga ctggacgcgg cgactcagtc
      481 atgatgcgac gcagcactcg caacccatcg agcctgggca tctcgagatc gagtgtgatg
      541 atgtccggat cgagccgtcc cacctgtgtc attgcgtcga caccatcgcg cgcaaagccg
      601 atcacgcgga aatcaggatg cgcgtcgatc atctccgcga tcagctttcg catgaaggcg
      661 ctgtcatcga cgacgagaac gccgcgcacg cccgaaacaa gccgggtcat aacggcttgc
      721 ggtagatgcg ctcgcgcagg tccaccggaa cgaggtgccg gcgcgcccgt ccgaagatcg
      781 tttcgacgtg acccatgatc aggtagccgc cagggcgcaa cgagtcgaag atcgaatcga
      841 caagcgcctc ctgagtcgcg cggtccagat aaatgacgac gttacgacag gcgacgagat
      901 cgaacgaccg tgcgtcgggc ggatcgcgca atacgtcgcg ccgctcgaat cgcgttatcg
      961 cgcgaatgga tgggagcaca gttcgtcggt cgcccacctg cggaaacaga tcatcgagca
     1021 gttcgggtgc cgtatcggtg aacgacgcgg gcaggtacgt tgcacgattc gcagcatcca
     1081 gtgaccagcg atctatgtca cttcccagta ccgtcacgcg agcaaaacgg tgcagctcgc
     1141 cggttgcgcg agcatgctgg tagaataacg ccgccagtga gtatgcctcc tcgccggacg
     1201 cgcttccggc gctccagacg tcgatgtgcg gaacacgacg ccacagttcc ggaatcacat
     1261 gctgcgccgc gaccgcgaac gtattcgggt tacgaaagaa tctcgtgaca ttcaccgtta
     1321 gcgtatcgat cagacgctcg tactcgctgc tatcgctatc gagcagacag ccgtactgcg
     1381 cataggtcgc ggcaccgcgc gcgcgcatgc gaaccgcaat gcgacggcgg acgcatccat
     1441 ccttgtaatt ggtgcaacgg aactcgctct cgcgcgtgat cttctccgcg agatcgcgga
     1501 agccatcgtc gacgccggga tggctcagcc tgtccagcgt catagcgcgt ccagatggtg
     1561 cgctcggcga taggcctctc tggcctcgtc gaagcgacca tcccgctgca gcgaatcggc
     1621 gaagttccgg tgcagctggg gaagtgtgga atcctcgatc agtccgcgct ccactgtccg
     1681 cagtgcgtcg tcgaagtcac cgcgcgcctc gtacgccacg gcgaggttgt tccacagaac
     1741 cgcgtacgac gggtatacct gcaccgcctc gctcagcagc gctatcgcgc gatcgagatc
     1801 gttgaccatc gccgcggcaa gacccgcata atggaaccac acgggcggcg gccggcgcgt
     1861 gccccagagc gttcgcgcgg atgccagcgc tgcgtcggcg gtctcgtagt ctctcgccac
     1921 cacagccatt gcggctgcat tggtctggac cagcgggtca ccgcggcctc cgtgtgaaag
     1981 tgcatccgcc atggccgcac gtgcgcgatc catgtcgccc atctgctcgt atgcgtacgc
     2041 gagattcacg aacaccgcgg gacgcgacgc ctgttgttgc gtgacgtagc gctcgaatgc
     2101 atgcgctgcc gcgggccact gctcctgtct cagcgcgacg aggccgaggt agaacgacgc
     2161 ttccggatcg ttctcgcgca acgcgtcgac gcggcgaaat tcgcgttggg actcctcgta
     2221 cattcccgtc ttgtagaacg ccactcccag attacggtgc tcggtcgcct tgtcgtcagc
     2281 acgcgcgggt agccgtgcgc gcgtactgac accgacccgt atcatgtatc cggtcatcag
     2341 cagaccatac agagtcttcg ccgtgacgaa ctctccgagc cgcgactccg cgatgagcgc
     2401 gcttacatcg cgctggccat ccacgagcgg tacgagcttc tcctcttcgg gggtgagctc
     2461 acgctcgatc gccatcatgc gatgacggtc catcgcgtac acaatgtcga atgtcggtat
     2521 cttcttcgcg atcagcgccc actcg
//
LOCUS       DATIMD010000238         3227 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3268066, whole genome shotgun sequence.
ACCESSION   DATIMD010000238 DATIMD010000000
VERSION     DATIMD010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3268066"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..383
                     /locus_tag="VLI40_05525"
     CDS             <1..383
                     /locus_tag="VLI40_05525"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSU96669.1"
                     /translation="VSACTWTSSKNPTHAPAGIVLLRGYVRGCSVDAVSLVRAEIAST
                     LGITAEPLFTRVYEWPAGIPVYPPDHATSVTALTDALAAAPGIFVAGSAFHGVGIPDC
                     ISSGERAAESVAAYLAAVQTEEAA"
     gene            380..1687
                     /gene="hemL"
                     /locus_tag="VLI40_05530"
     CDS             380..1687
                     /gene="hemL"
                     /locus_tag="VLI40_05530"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: protein motif:HMM:NF000818.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HSU96670.1"
                     /translation="MTSVGTTPDTSESTRLYEIARQHFPGGVSSPVRAFNGVGGTPRF
                     IVSGKGAYVTDADGNRLLDYVLAYGPHILGHAPKVVLDAITETASHGTSFGAPSTQES
                     DLAQAIQGFVPSMRVMRFVTSGTEAVMSAIRLARAATGRDLIVKFDGNYHGHADAVLA
                     RAGSGVATLGLPDSPGVPAAATHDTMVLPYNDIETVRNAFAEYGDRIAAVIVEPIAGN
                     MGVVLPVPGFLEVLRWQTTAYDTVLIFDEVMTGFRVHPGGAQALFGITPDLTTLGKVI
                     GGGLPVGAYGGRPDLMRQIAPDGPVYQAGTLAGNPVVMAAGIAVLRELAKPGVWQRAA
                     DATSALADGLVREAAIAGVELQVPHMGTMLTPFFAAQTVTDYRAARASDTRRYSAFFH
                     MMLDLGVSPPPSAFETWFLSTAHGETEIDYTIRAAAQAFGSLG"
     gene            1811..2311
                     /locus_tag="VLI40_05535"
     CDS             1811..2311
                     /locus_tag="VLI40_05535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96671.1"
                     /translation="MTMSAASIALPSRRRGGVITVATTGCVLAIVDGFSAYALGVLFF
                     GHPSFARVFQGVAAALLGKQAYASGTEGMLIGIAMHITVAFGWATLYYVTYRNWPALQ
                     RAVNGKRGVATTGPALGAIIWLSMCYIVFPMTKLHHVPLTSLSFVVNFIHHMLVVGPL
                     VVALDR"
     gene            2414..>3227
                     /locus_tag="VLI40_05540"
     CDS             2414..>3227
                     /locus_tag="VLI40_05540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96672.1"
                     /translation="MFVTGRPKLKKIRTILVGVTLAMIVGGAALSLRDAIRSAREQRE
                     AAQRTLDAYAHFASYLYETRVYLMARERAVMQAFVKLGPDDPWTGPLPPPTIIPAIPD
                     TGEACARSPLWKIYRFRMDMPSRTLTVVGGTPTPAAMRLIRDSIPKLAVTPEIAAWHF
                     GYLFVDSPGFPEAIAFTPVRDAAGHVRAVYGYRSCYATYDVWDYALVHRIARIVPPFL
                     TEGMPTDSIVSVVVADSHGRTLYAAPARSVPVRAIGTDTVPQISGIVITIGLR"
BASE COUNT          589 a         1023 c          996 g          619 t
ORIGIN      
        1 tggtcagcgc gtgcacctgg acatcgtcca agaaccccac gcacgcgccg gccggaatcg
       61 ttctgcttcg cgggtatgta cgcggttgca gtgtcgatgc cgtctcactc gtacgcgctg
      121 agattgcgtc cacgctcggg atcactgcgg aaccgctgtt cacacgcgta tacgaatggc
      181 ctgcggggat cccggtgtat ccgccggatc acgcgacgag cgtgacagca cttaccgacg
      241 cccttgcagc cgcgcccggc attttcgtgg caggttcggc gtttcatgga gtcggaattc
      301 ccgactgcat cagttcgggc gagcgcgcgg ctgaatccgt tgcggcatat cttgcagcgg
      361 tacaaacgga ggaagcggca tgacatcggt cggtacaacg ccggatactt cagaatccac
      421 gcgactctac gagattgccc ggcagcactt cccgggcggc gtgagctcgc cggtgcgtgc
      481 cttcaatggc gtcggcggaa cgccgagatt catcgtaagc ggcaagggcg catacgtgac
      541 cgacgccgat ggaaatcgcc tcctcgacta cgttctcgcg tatggtccgc acatcctggg
      601 tcacgcgccc aaagtcgtgc tggacgcgat caccgaaacc gcgtcgcacg gcacgagctt
      661 cggcgcgccg agcacgcagg aaagcgatct cgcgcaggcg atccagggat tcgtaccatc
      721 gatgcgtgtc atgcgattcg tgacatcggg cacggaagcc gtcatgagcg cgatccggct
      781 cgcgcgtgcg gcgacgggtc gcgacctcat cgtcaagttc gacggcaact accacggcca
      841 cgccgacgcc gtccttgcac gagccggatc cggcgttgcg acgcttggac tgcccgattc
      901 accgggagtg ccggctgcgg caacgcatga cacgatggtg ctgccgtaca acgatatcga
      961 aaccgtacga aatgcattcg ccgaatacgg tgacaggatc gcggcggtga tcgtcgagcc
     1021 gatcgccgga aacatgggcg tcgtgctacc ggttccaggc ttccttgaag tattgcgctg
     1081 gcagacgacg gcgtatgaca cggtgctcat cttcgatgag gtgatgaccg gcttccgcgt
     1141 ccacccgggt ggtgcgcaag cgctattcgg aatcactccg gacctcacca cgcttggcaa
     1201 ggtgataggc ggtggtcttc cggtcggcgc gtacggcggc cgccccgatc tgatgcgaca
     1261 gattgcgcca gatggtcctg tttatcaggc aggaacgctc gctggaaatc cggtcgtgat
     1321 ggcggcagga atcgccgttc tccgtgagct ggcgaaaccc ggcgtctggc aacgtgcggc
     1381 tgacgcaacc agcgctctgg cagacggtct cgtccgcgaa gctgcgattg ccggcgtgga
     1441 acttcaggtg ccgcatatgg gcaccatgct gacaccgttc ttcgcggcac agacggtgac
     1501 cgattacagg gcggcccgcg catcggatac gcgccgctat tcggcgttct tccacatgat
     1561 gctggatctg ggagtttcac cgccgccgtc cgcgttcgag acctggttcc tgtcaacggc
     1621 gcatggtgag acggagatcg actacaccat cagggcagcc gcccaagcct tcggcagcct
     1681 cggctgagcg tcgcgtcgac gcgacgcaga ctgttccgac actttcgtca ccatactctg
     1741 acaggcgctg tgcttgtgca caacgctgcc tggctgctta gtgctgtagc accgcaacca
     1801 ggagaatggc atgacgatgt ccgcagcatc aatagcactt ccatcccggc gtcgaggcgg
     1861 ggtgatcacc gtcgcgacga ctggatgcgt gcttgcaatc gtcgacgggt tcagcgcgta
     1921 cgcactgggt gttctcttct tcggccatcc gtcgttcgct cgcgtttttc agggagtcgc
     1981 ggccgcgctg ctcggcaagc aagcatatgc gtctggcacg gaaggcatgc tcatcgggat
     2041 cgcgatgcac atcactgtcg cattcggctg ggcgacgctg tattacgtga cttaccgcaa
     2101 ctggcccgct ctgcaacgcg cagtgaacgg caaacgtgga gttgcaacca caggcccggc
     2161 actcggcgcc atcatctggt tgtccatgtg ctacatcgtc ttcccgatga cgaagctgca
     2221 ccacgtaccc ctcacatcgc tcagcttcgt ggtcaatttc atccaccaca tgctcgtggt
     2281 cgggccgctc gtcgtggcac tggaccgata gtccggcaca caccgcaaca gtacggaatc
     2341 attcgtatac gttcgcggag tgggcgcggc cagcgtaccg tggtatcttg attgatccaa
     2401 cgggatagcg cccatgtttg tcaccggccg gccaaaactg aagaagatcc ggacgattct
     2461 cgtgggggtg acgctcgcaa tgatcgtcgg aggtgccgcg ctctcgctgc gagacgcgat
     2521 ccgatccgcg cgggagcagc gtgaggcggc gcaacgcacg ctcgatgcgt atgcacattt
     2581 cgcaagctat ctctacgaga cccgcgtgta tctcatggcg cgcgagcgcg ctgtgatgca
     2641 ggcatttgtg aaactgggac ctgatgaccc atggaccgga ccactcccac ccccgacgat
     2701 aattcccgcg atcccggaca ccggcgaggc gtgcgcgcgg tcgccgctgt ggaagatcta
     2761 ccgcttcaga atggacatgc cctcccgcac gctgacggtc gtgggcggga cgccgactcc
     2821 ggctgcgatg cgactcattc gtgactcgat tccgaaactc gccgtcacgc cggagatagc
     2881 cgcgtggcac ttcggctatc tgtttgtcga ctcgcccggc tttcctgaag caattgcgtt
     2941 cactccagtt cgtgacgcgg cggggcacgt acgagccgtg tacggctacc gatcatgcta
     3001 cgcaacatac gacgtgtggg attatgcgct ggttcatcgc atagcgcgga tagtccctcc
     3061 attccttacg gaaggcatgc ccaccgactc gattgtgagc gtcgtcgtcg ccgacagtca
     3121 cggacgcacg ctctacgcgg cgcccgcacg cagcgtcccc gtacgcgcga tcggaaccga
     3181 cacggtgccg cagatcagcg gcatcgtaat cacgatcggc ctccggc
//
LOCUS       DATIMD010000239         4568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2979551, whole genome shotgun sequence.
ACCESSION   DATIMD010000239 DATIMD010000000
VERSION     DATIMD010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4568
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2979551"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            924..1271
                     /locus_tag="VLI40_05545"
     CDS             924..1271
                     /locus_tag="VLI40_05545"
                     /inference="COORDINATES: protein motif:HMM:NF037477.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="contact-dependent growth inhibition system
                     immunity protein"
                     /protein_id="HSU96673.1"
                     /translation="MATELEEATETRAGSVRQMKQCIESDADLLKALHRRADLDEVVP
                     MVLDVIERDPLASAGSFRGDLLRALIELPAKFWHDDPASFQRYKTAVRAGAIARLALP
                     RSERMAFWTNANG"
     gene            1369..1710
                     /locus_tag="VLI40_05550"
     CDS             1369..1710
                     /locus_tag="VLI40_05550"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA C4-type zinc finger protein"
                     /protein_id="HSU96674.1"
                     /translation="MRSTGAISSAQLRELEADIRSELARIERSLAREAQEDAMLADTA
                     SLRVASGTASDGGLTVTLTGRVHARHAELTEALRRIEDGRYGVCGHCGESIAYGRLLV
                     VPEATNCLECR"
     gene            1801..2778
                     /locus_tag="VLI40_05555"
     CDS             1801..2778
                     /locus_tag="VLI40_05555"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSU96675.1"
                     /translation="MPTHKSTHGKFLNPWPHTSPHGLRDVLKWVRDRRRTRRPDPPAS
                     IFPRATATFPTRATTDEVVVTWIGHSSFLLQIGSVNILLDPIWSERASPVQFAGPRRA
                     TAPGVSFDSLPPIDLVLLSHDHYDHLDVATIRRIIARHPHARFIAPLGVGAWLRARGA
                     TVVAELDWWQSVHVHNLDITCTPAQHFSGRRPNNRDSTLWCGWTIRAGDRAVFFAGDT
                     GRHPEFGEITRRLGPFDAAFIPIGAYDPRWFMQPVHMAPDEAVSAYVDVAAENSGRPC
                     RFIAMHWGTFKLTDEPMDEPPALTRVEWEKARLDPEMLWVMAHGETRRV"
     gene            complement(2863..3657)
                     /locus_tag="VLI40_05560"
     CDS             complement(2863..3657)
                     /locus_tag="VLI40_05560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96676.1"
                     /translation="MPSHLHVARGILQPARRFASRFTPNVSMLAAVTLGAAVCVAGCS
                     KGDRSSSGAAPAAGTITATAAQPASADTDQSAHGAGLPAGYMAQFDHANAKTTDASYS
                     EKEPGRWEVKTGPAHILYSPKDTAANKYSTSATFQQLEAPSHPEAFGVFVGGSNLNAP
                     TAKYTYFIVRGDGKYMVKVRDGASTRTITDWTANPAIPAQDASGKGLYGIRIDVSGKT
                     ANVSVNGAPVTTISGKDIPLNGITGVRINHNLHLIVTPVSVIRGKA"
     gene            3807..4334
                     /locus_tag="VLI40_05565"
     CDS             3807..4334
                     /locus_tag="VLI40_05565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96677.1"
                     /translation="MATKKSSRKSSSRTSGSRTGAKRGSKSKAKKGTRKTVARKASTR
                     KGGARKTTRKATRKTTRKATRKAAGKSTRKAGARKTGGRKAASKRGATKSAAKRGPAR
                     KKSTARKSSATKKTTRKSTRKSTRKSTRKQSPITRVKRVAAGIAEQATHVAEGAATKV
                     TDAATAVTDFVQDKF"
BASE COUNT          928 a         1421 c         1401 g          818 t
ORIGIN      
        1 tcatccttgc gaatctcgca gctggtgaat ccagcgagac actgcgcgag acatatcccg
       61 tcttgaagga tgctgcgatt cgcgcatctc ttgcatacgc tgcggagttg gcgagtgaac
      121 gcgtgatccg gcttcctgac taggagagcg tttattgaat gaaagggcgc atacgcgcgg
      181 aatagggaac tcatcctttc cttcggtgta gaacccgctg cagtgcgatt tgcatcacca
      241 cccggctcgc ggccatctac ctttcttgac atcctccacc cctcgggcta cagtaccaaa
      301 gggagtcgcg tcccgaccat ctgccaccag acgttcccgg ccttcgagcc gctaactctg
      361 cttgtgtaac caccatgcct ccgcatggtg tccagatatc ggaacacgcg accttttttg
      421 ctaacggaga tcatctaatg tcgacttcaa ctcagcgcgc ggatctcgat ccgacttgcg
      481 gcaacggccg gtcaatggcc tgccggccgg tcggcttgcg cgcgcccaaa cgagtcgatc
      541 tcagatggat gatgcgccgg agcacgagtt gcagccgagt gtcggccatg cgaccgcgca
      601 catatcccaa tagcaggacg ggcagccagg agtaccgcta cagcggttga tccggctcac
      661 agtcagcggc gagtttccca ctcgccaact cgacaccccg cctgcgctct ccagcctggc
      721 ggggtgtttt cgtttccacc attcaccatc caccatccac ttcctcgaaa tccgcgaaac
      781 gcaatgacag gaggcaatga tgaaggcgct atggaccaaa ttcgcaatcc cggtctgcat
      841 gccaccgggg atctccgaac gccatgcaca acgccatgca caacgaaccg cgcaccgaag
      901 ggaggacgaa tcagattcca ccaatggcaa ccgaattaga agaagcaaca gaaacgagag
      961 cgggatccgt cagacagatg aaacaatgca ttgaaagcga cgcggatctg ctgaaagcac
     1021 tgcaccgccg cgccgatctc gacgaggtcg tgccaatggt gctcgatgtg atcgagcgag
     1081 atccgctcgc gtcggctgga agctttcgcg gtgacctgct acgggcactg atcgagctgc
     1141 cggcaaagtt ctggcacgac gatccggcgt cgtttcaacg ctacaagacg gcggttcgcg
     1201 cgggtgctat cgcacggctg gcactgccgc gctcggagcg aatggcgttc tggaccaacg
     1261 ccaacggata ggacgagaga aaacgggaat gaccatgtaa gggcaggccc ccgtgcctgc
     1321 ccgttgttga ggcaggctca ctgcccacca cccaacagga ggaccgaaat gagatcgacc
     1381 ggagcaatat cgagtgcaca actgcgcgag ctggaggcgg acatccgctc cgagctggcg
     1441 cgcatcgagc ggtcgctcgc gcgcgaggcg caggaagatg cgatgctcgc ggataccgcg
     1501 tcgctgcgcg ttgcttcagg cacggcgagc gacggtggac tcacggtgac gctcaccggt
     1561 cgcgtccacg ctcggcacgc ggagctcacc gaagcactgc ggcgcatcga ggacggcagg
     1621 tacggcgtct gcggacactg tggcgagagc attgcgtatg gacggctgct cgtcgtcccc
     1681 gaagcaacca actgcctgga gtgtcgataa tgagtggctc ggatagaaag cgcctcgtga
     1741 tgtggcgtcg cttaatgttg atgcatgcag ccgccagagg acagaacggt tcagtcacag
     1801 atgccgacac acaaaagcac ccacgggaaa ttcctgaatc cgtggccaca cacgagtccc
     1861 cacggactgc gtgatgtcct gaaatgggtc cgggatcgcc gcagaacaag gcgcccggac
     1921 ccgccagcgt cgatctttcc ccgcgcaact gcaaccttcc ccacacgtgc gacgaccgat
     1981 gaagtcgtcg tcacttggat aggccactcg agctttctgc tccagatcgg atcggtgaac
     2041 atcctgctgg atccgatctg gagcgagcgc gcttcaccgg tgcaattcgc cggtcccagg
     2101 cgcgccacgg cgcccggcgt cagcttcgat tcacttccgc cgatcgatct ggtgctgctg
     2161 tcgcacgacc actacgacca cctggacgtc gcgacgatcc gccgcataat cgcccgccat
     2221 ccccatgccc ggttcatcgc accactcggc gtcggtgcct ggctccgcgc tcgcggcgcg
     2281 acggtcgtgg cggagctgga ctggtggcag agcgtgcacg tgcacaatct cgacatcacc
     2341 tgcacgccgg cacaacactt ttccggcaga cgcccgaaca accgcgactc gacgctctgg
     2401 tgcggctgga cgatccgcgc cggtgatcgc gcggtcttct tcgcgggcga tacgggaagg
     2461 catccggagt tcggcgagat cacacgacga ctcggaccct tcgacgctgc attcattccg
     2521 atcggcgcct acgatccgcg ctggttcatg cagccggtac acatggcgcc cgacgaagct
     2581 gtgtcagctt atgtcgacgt agccgcggag aattcggggc ggccgtgcag gttcatcgca
     2641 atgcactggg gaacgttcaa gctcacggat gaaccgatgg acgagccgcc cgcgcttacg
     2701 cgcgtggagt gggagaaggc tcggctggat ccggagatgc tatgggtaat ggcgcacggg
     2761 gagacgcgga gggtgtgatg gcacaagctc ccgcagagcg tcgtcatcct cgccgacatc
     2821 cggccatgga tccccgcctt cggcgaggat gacaacctcc ccctacgcct tgccgcggat
     2881 caccgacacc ggcgtcacta tcaggtgcag gttgtggttg atccgcacgc ctgtgattcc
     2941 gttaagcgga atgtccttgc cggagatcgt ggtgaccggg gcgccgttca cgctgacgtt
     3001 cgctgtcttg ccgctgacgt cgatcctgat tccgtagagt cccttgccgg atgcatcctg
     3061 cgccggaatg gctgggttcg cggtccagtc ggtgatggtg cgggtgctcg cgccgtcccg
     3121 gaccttcacc atgtacttgc cgtccccgcg cactatgaaa tacgtgtact tcgccgtcgg
     3181 tgcgttcagg ttggatccgc cgacgaagac gccgaatgct tcgggatgcg acggggcttc
     3241 cagctgctgg aacgtggcgg acgtgctgta cttgttggcc gcggtgtctt ttggcgaata
     3301 cagaatatgg gccgggccgg tcttcacttc ccagcggccg ggctccttct ccgagtatga
     3361 cgcgtcagtg gtcttcgcgt tcgcgtgatc gaattgcgcc atatatccgg cgggcagacc
     3421 ggcgccgtgt gcactctgat cggtgtcggc cgatgccggc tgtgctgcag tcgcggtgat
     3481 cgttccggcg gccggagcgg cccctgacga tgatctgtcg cccttgctgc acccagcgac
     3541 gcagacagca gcgcccagcg taacagccgc caacatcgat acgttcggtg tgaatctgct
     3601 ggcgaatcgc cgagctggct gcaggattcc gcgcgctaca tggagatgag atggcattcg
     3661 ttggtaggaa tcgtcgtgaa atttccagtt gtcgcacgga aagatatcac gctaattgcg
     3721 cgaaaaactc ttgcgcgtta tacatttgtg cgcgattctt gcttggattc acgtgagctg
     3781 aattaaccaa cgttccggag tagagcatgg caactaagaa atcgtcccgt aagagctcga
     3841 gccgtacttc cggttcacgc accggcgcaa agcgcggatc gaagtcaaag gcgaagaagg
     3901 gcacgcgtaa gaccgtcgcc cggaaggcat cgacccgcaa gggcggtgca cgcaagacca
     3961 cccgcaaagc cacccgcaag accactcgca aagccactcg taaggccgct ggcaagagca
     4021 ccagaaaggc cggcgctcgc aagactggag gccgcaaggc agccagcaag cgcggagcga
     4081 ccaagtctgc cgccaagcgc ggaccagcgc gcaaaaagag cacggcgcgc aagtcgtctg
     4141 ctaccaaaaa gacgacgcgg aaaagcacgc gtaagagcac acgcaagagc acgcgtaagc
     4201 agtccccgat cacacgtgtg aagcgcgttg cggctggtat cgccgagcag gcgacgcacg
     4261 tcgccgaggg cgctgcgacg aaggtgacgg acgctgcgac tgcggtaacc gatttcgtgc
     4321 aggataagtt ctaggctctc gtcattcccg ccgtagggtg cggataaatc cggcgccttg
     4381 ggaatcagag agtcgtcatt cccgctttcg cgggaatgac gagggacagg tggatgcaga
     4441 tgaaccggat agctgacccc gagctcagct aatccgggcg ccctggctgg ggcgaggttc
     4501 cgggaccagt ctccagccag gcgcgcacct cctcgaatac gcgctcacga ccgtagtcca
     4561 cggttatc
//
LOCUS       DATIMD010000240         4139 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1826656, whole genome shotgun sequence.
ACCESSION   DATIMD010000240 DATIMD010000000
VERSION     DATIMD010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4139
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1826656"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..1112
                     /locus_tag="VLI40_05570"
     CDS             72..1112
                     /locus_tag="VLI40_05570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HSU96678.1"
                     /translation="MPRIALLLGTIACVSTGVAAQSTPVTHTLMPSPTTVAWGYYDAA
                     AKPVLHINSGDRIVVGTLLTSSPKRLEGAGVKPADVEQSLRDIYDKVTDKGPGGHILT
                     GPIYVNGADSGDVLEVRIEKIDLAIPYAYNAFGGKSGFLPEDFGYSKMRIIPLDKRKM
                     LAHFADGIDIPLRPFFGSIGDAPDPALGRVNSAPPGMHAGNLDNKELVAGTTLYIPVH
                     TAGALLEIGDGHAGQGNGEVDITALETSLVGTFQVIVRKDMHLTWPRAETPTHWITMG
                     TDKDLVTATKTAVRQAIEFLMSRGLSKDDAYMLVSVACDVDDTQLVDGNVGVHVMIPK
                     AIFTGPAATASR"
     gene            1203..1276
                     /locus_tag="VLI40_05575"
     tRNA            1203..1276
                     /locus_tag="VLI40_05575"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1237..1239,aa:Lys,seq:ttt)
     gene            1357..1647
                     /locus_tag="VLI40_05580"
     CDS             1357..1647
                     /locus_tag="VLI40_05580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96679.1"
                     /translation="MKDTGGLDSDLPQLPDPGGSAISERVAHVNELVRHLWNALHGLN
                     HTAPEDTRDEISAARIMVRDLKREIMESIERLPADYARVYNSAVIAVYSLLR"
     gene            1786..2622
                     /locus_tag="VLI40_05585"
     CDS             1786..2622
                     /locus_tag="VLI40_05585"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSU96680.1"
                     /translation="MSTKDLPSRVIHGGHRSRNSFITGCVLAFASAGTGAAQQPTVGP
                     SAQPASAPVAQRPSSVRGLVRDSADTPIPFATVVWGEARQVITTSDSGAFALTDIPPG
                     KTRFTVRRLGYAPVDFDLMLKPGTLKPVVVHLVPAAPALSTVDVEAPAPLGEDLYRDE
                     RFRATGFFDRKAHLAGYFISPDEVERRRPTYVSDLLYGVPGVMLVGRPHTPSAHYVSA
                     SGHCRLQMYLDGHAVPDGDDFVSGSDIKAVEVYSSLLRSSDRFLPSPQKGYCGSIVVW
                     TK"
     gene            complement(2669..3502)
                     /locus_tag="VLI40_05590"
     CDS             complement(2669..3502)
                     /locus_tag="VLI40_05590"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSU96681.1"
                     /translation="MPISPDRVRIAAVSDIHCSRTSQGTLQPIFAAAAERADVIAICG
                     DLTDYGLPEEARVLVKELTGIRAQVVAVLGNHDYESGKQTELHDILNDAGVHVLDGEA
                     VEILGVGFAGTKGFAGGFGSGTLGAWGEAEVKSFVNEAIHEALKLETALARIRTEPRV
                     AIMHYSPIRGTVVGESPEIFPFLGCGRLEEPLSRYPVAAVLHGHAHNGTPEGATAGGA
                     PVYNVAMPLLLKLDPDALPVKFIEVAARHDTHTTEVPPRAYIGPERRAVSAATRSTGS
                     A"
     gene            3600..>4139
                     /locus_tag="VLI40_05595"
     CDS             3600..>4139
                     /locus_tag="VLI40_05595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96682.1"
                     /translation="MTSSSAAFVDQMIQATRSTAGDFDRRAAGRKPSRQDIASPAAQA
                     FYARVMRTLRADGMEFLVGGTYAFTPYTGIERSSKDFDIFVRSGDIERVLALLARSGL
                     RTDMTFPHWLAKVFYRRYFVDIIFNSGNAVTPVDEQWFAHGQDGVVLGVPVKLVPAEE
                     MLWSKAFVMERERYDGADVV"
BASE COUNT          771 a         1345 c         1201 g          822 t
ORIGIN      
        1 ccggaatagt gatataatcg tgacaggcgc gatgcagctg catcgcgcct gtcaccttac
       61 actgaattaa catgccgcgg atcgcgctgt tgcttggtac catcgcatgc gtgtcgaccg
      121 gtgtcgctgc gcaatcgact ccagtcacgc atactctcat gccgagcccg acgacagttg
      181 cgtggggcta ctacgacgcg gcggcgaaac cggtgctgca catcaactcg ggtgaccgga
      241 tcgtcgtcgg gacgctcctc acgtcgagcc ccaagcgact cgagggtgca ggcgtcaagc
      301 cggccgacgt ggagcagtcg ctgcgcgaca tctacgacaa ggtcaccgac aaggggcccg
      361 gcggacacat tctcaccggc cccatctacg tcaacggagc cgattcgggg gacgtgctcg
      421 aggtccgcat cgagaagatc gatctggcaa ttccgtatgc atacaacgcg ttcggcggga
      481 agagcggctt tctacccgaa gatttcggct actcgaaaat gcgcatcatt ccgctggaca
      541 agcggaagat gctcgcgcat ttcgccgacg gcatcgacat tccgttacgc ccgttcttcg
      601 gcagcatcgg tgacgcgcca gaccctgcgc tcggcagggt caacagtgct ccgcccggaa
      661 tgcacgctgg caatctcgac aacaaggaac tggtagcggg aaccaccctg tacatacccg
      721 tccacaccgc tggtgcgctg ctcgagatcg gtgacggaca cgcagggcag gggaacggcg
      781 aggtcgatat taccgcactg gaaacgtcgc tcgtcggcac cttccaggtg attgtccgca
      841 aggacatgca ccttacctgg ccgcgcgccg agacgccgac ccactggatt accatgggta
      901 cggacaagga tctcgttacc gcgaccaaga cagccgttcg tcaggccatc gaatttctca
      961 tgagccgcgg tctcagcaag gacgacgcct acatgctggt gagcgtggcc tgcgacgtcg
     1021 acgatactca gctcgtcgat gggaacgtcg gtgttcacgt gatgatcccc aaggcgatct
     1081 tcacagggcc ggctgccacc gccagcaggt aacgcattcg tcgttcccgc tttcgtggga
     1141 atgacgaagc catgccgcct tcaccggcaa ttcgtttaaa ttccctgccg taagagcagt
     1201 gcgggcgggt agctcagttg gttagagcag gagcctttta agcttcaggt cgtgggttcg
     1261 attcccaccc cgctcattgt cgttcacagg atcgcagagc gcgctcgcta tttcgtcctt
     1321 gccagggacg catcgcgccc gtaacgtctt tcttacatga aggacaccgg cggcctcgac
     1381 tcagatctac cccagcttcc ggacccaggc gggtccgcga tttcggagcg ggtggcacat
     1441 gtgaacgagc tggtgcggca cctctggaac gcgcttcacg gactcaatca caccgctcca
     1501 gaagacacgc gtgacgaaat ctcagccgcc cggatcatgg tgcgcgatct caagcgcgag
     1561 atcatggaga gcatcgagcg ccttcccgct gactacgcac gcgtttacaa ctccgccgtc
     1621 atagccgttt attcgctgct gcgatgacgc cagggcgcga caattcgcgc ccgaatgtca
     1681 tgattgggtg acactttgca gtcgatactg gcgccgcggc gacgctgcac ctatcgtggt
     1741 gccgatcctt cccaccttca tacggtctcc cgcggcgagg tcacgatgag tacgaaagat
     1801 ctgccctccc gggtaatcca tggcggtcac cgatcccgca attcgttcat caccggatgc
     1861 gtgctggcgt tcgcatcggc cggtaccggc gctgcgcagc aacccacggt cggcccatcg
     1921 gcgcaaccgg ccagtgctcc agttgcgcaa agaccgtcct cggtccgtgg cctcgttcgt
     1981 gattcggccg acacgcccat tccgttcgcc actgtcgtgt ggggtgaggc gcgccaggtc
     2041 atcacgacca gcgattccgg cgcctttgca ctcaccgaca tacctcctgg taaaacgcga
     2101 ttcacagtcc gccgacttgg ctacgcaccg gtcgatttcg atctcatgct caaacccgga
     2161 actctcaagc cggtcgtcgt tcatctcgtg ccggctgcgc ccgccctctc gacggtcgat
     2221 gtcgaagcgc ccgcgccgct cggcgaggac ttgtatcgcg atgagcgatt ccgtgcaacg
     2281 ggattcttcg atagaaaagc gcacctcgcc ggttacttca tctcacccga cgaggtcgag
     2341 cgccgccggc cgacgtatgt gagcgatcta ctgtacggcg tcccgggcgt gatgttggtc
     2401 ggccggccgc acacgccgtc tgcacactac gtatccgcga gtgggcattg cagactgcag
     2461 atgtacctgg atggtcatgc tgtccctgac ggagacgact tcgtttccgg aagcgatatc
     2521 aaggcagtgg aagtttacag cagcctgctt cgctcatcgg acagatttct tccgtcaccg
     2581 cagaagggct actgcggcag catcgtcgtc tggaccaagt aacgcacgcg gacgaccagc
     2641 ggcctgtccg tcgctctcac gcgcttcctc acgcacttcc ggtcgatcgt gttgcagcgc
     2701 tgacagcgcg tcgctcgggg ccaatgtatg cgcgcggcgg aacttccgtc gtatgcgtat
     2761 cgtgccgtgc cgcgacctcg atgaacttca ccggtagcgc gtcaggatcc agcttgagca
     2821 acagaggcat cgcaacgttg taaaccggag cgccaccggc cgtagcaccc tccggtgtcc
     2881 cgttgtgcgc gtgaccgtgc aggaccgctg cgacgggata gcgtgacaac ggctcctcca
     2941 atctgccaca ccccagaaat ggaaatattt ccggagactc gccgacgacg gttccccgta
     3001 tcggcgaata gtgcatgatt gcgacacgtg gctctgtgcg gattcgtgcg agcgccgtct
     3061 ccagtttcaa cgcttcgtgt atcgcctcgt tgacgaagct ctttacctcc gcctcgcccc
     3121 acgcgcccaa cgttccgctc ccgaagccgc ccgcgaaccc cttggtgcct gcgaatccga
     3181 caccgagtat ctccacagct tcgccgtcga gcacgtgaac tcccgcgtcg ttcagaatgt
     3241 cgtgcagctc cgtttgcttg ccggattcgt aatcgtgatt gcccagaacc gcgaccacct
     3301 gcgcccggat tcccgtgagc tccttcacga gcacgcgcgc ctcttcgggc agcccgtaat
     3361 ccgtgaggtc tccgcatatc gctatgacat ccgcgcgctc cgcagcggcc gcgaagattg
     3421 gctgcagcgt gccctgcgaa gtgcggctgc agtgaatgtc gctcaccgcg gcgatccgta
     3481 cgcgatcggg agaaataggc attagtggcg aaatagacat ggtttcgaac gattgttcat
     3541 gacttgcgag ccccacactt gcagcacgcg cctcgtcacc gttcaacatt cgttcccaca
     3601 tgacctccag ctcagctgcc ttcgtcgatc agatgatcca ggccacccga tccaccgctg
     3661 gcgatttcga ccgtcgcgca gccggacgca agccttcccg gcaggacatc gcgtcgccgg
     3721 ctgcccaggc gttctatgcc cgcgtgatgc gcacactgcg cgctgacgga atggaatttc
     3781 tggtcggagg cacctacgct ttcacgcctt atacagggat cgagcggtca tccaaggatt
     3841 tcgacatttt cgtccgcagc ggtgatatcg agcgcgtcct ggccctgctg gccaggtccg
     3901 gacttcgcac cgacatgacc ttccctcact ggctcgccaa ggttttctac cggcgttact
     3961 tcgtcgacat catcttcaac tcggggaatg cggtgacccc ggtcgacgag cagtggttcg
     4021 cccatggtca ggacggcgtc gtgctgggcg tgccggtcaa gctggttcca gcagaagaga
     4081 tgctctggtc caaggctttc gtcatggagc gagagcggta cgatggggcg gacgtggtc
//
LOCUS       DATIMD010000241         6810 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3844491, whole genome shotgun sequence.
ACCESSION   DATIMD010000241 DATIMD010000000
VERSION     DATIMD010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6810
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3844491"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..647
                     /locus_tag="VLI40_05600"
     CDS             <1..647
                     /locus_tag="VLI40_05600"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HSU96683.1"
                     /translation="QREPIPTIASSATAEAKFTPDRATISISVQTRATTAAAAAADNA
                     KKQNAVLAALRGLGLTNEQLSTTGYSVNPEYRYDPNRTPTLTGYSVTNTVLADIHDLT
                     QVGKVLDTALANGSNMVSSLEFYASNTDAARQKALADAVAKARADAEVAAKAAGGSLG
                     PLMHLSVGGGGTYTPPRPMFAAKVMTQSGDTQINPGQQTISVNVSADWRFNPNR"
     gene            881..1681
                     /locus_tag="VLI40_05605"
     CDS             881..1681
                     /locus_tag="VLI40_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSU96684.1"
                     /translation="MSRVIAVANQKGGVGKTTTAVNLAASLSAAEQRTLLVDGDPQGN
                     ATSGVGIEPKDIGKTVYEVLLGEATVAEARKVGEHFRLLDVLPATPDLAGAEIELVDQ
                     PHREQRMRDALKPVRDEYDFILIDCPPSLGLITINMLAAADALIIPLQCEYYALEGLS
                     QLLNTVHRVQQGVNPSLGIDGVLLTMYDARLNLSRQVASDAREYFGSQVFETVIPRNV
                     RLAEAPSFGKPIILYDVASVGAQAYMGVARELIQRETLVASNNGEASQ"
     gene            1678..2616
                     /locus_tag="VLI40_05610"
     CDS             1678..2616
                     /locus_tag="VLI40_05610"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HSU96685.1"
                     /translation="MSADKTPSPRRLGRGLDALLGERTTQRPRSAPAESVEATGTGPS
                     EPASALREIAVVDIRPNHYQPRKEFSAEELKELTDSIRTAGLLQPIAVRSVKDGYELV
                     AGERRFRAVKSLGWPTIPAIVRDYDDRTMLTLALIENLQRADLNPIEEAEGYARLASE
                     FDLTQNEIADLVGKDRSTVANLQRVLQLPAAVRKMLETGALSLGHARPLLALENPALA
                     TKLAEEAVEHGLSVRAIEERVRQDAPRHDKPHRGRPRKEDTRPPEVRHVEDLLRKRFQ
                     TDVSLIRKKRDKGELRIQFYSTEDLNRLLEAMGAIE"
     gene            2714..3688
                     /locus_tag="VLI40_05615"
     CDS             2714..3688
                     /locus_tag="VLI40_05615"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HSU96686.1"
                     /translation="MSTVIHSLFAIAIVACGGGKEQGKPEANAFKVALVTTGSISDQG
                     WNAGAYKGLLAIRDSLGAHISNVQTQTPAEIDENFRQYGAQGYNLVFGHGFEYQDPAI
                     RIAPSFPETAFVTTSGVKTAPNVAGVYFTFSDGAYLAGIVAGGASRSGVIGAIGGTQL
                     PPVVAAFKAFEAGAKSVNPNVKLLTAYVGNWDDASAAREQALAQIARGADVIFQDADA
                     AGLGVFQAARQSKTVRVIGSNSDQNSVAPEVTLGSVVIDLPRAMMIIARDVKTGAFKG
                     HVYRLGENDGVVRWVVNPKLASEISPATAAKLDSARKLIDARTLKVPE"
     gene            3685..4458
                     /locus_tag="VLI40_05620"
     CDS             3685..4458
                     /locus_tag="VLI40_05620"
                     /inference="COORDINATES: protein motif:HMM:TIGR00486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HSU96687.1"
                     /translation="MTTTALIVRYLDDLLETDSVPDYPNALNGLQMANGGSVSRVAAA
                     VDFSLRTVTAAAEAGANLLIVHHGMFWGGLQPIRGKYFDRISALLAGDIAVYSSHLPL
                     DRHALYGNNALLAAELGLEPSAEFARFRTISIGVSGESDVVTAELAARADAFARSHGG
                     SARTTPIDAGRRTRSWAICTGAGASTETLSEARERGIDTLIVGEGPHHSAVDADESGI
                     TVIYAGHYATETLGVRALAAHVSDRFGVPWTFVEAPTGL"
     gene            4463..5911
                     /locus_tag="VLI40_05625"
     CDS             4463..5911
                     /locus_tag="VLI40_05625"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU96688.1"
                     /translation="MSDVALELASITKRFGRLAALDSASLRARRGTVHALLGENGAGK
                     TTLMRIAFGMLQPDSGRIIVDGANRSFASPADAIDAGIGMVHQHFTLVPAMTVAENIA
                     LGGRGVFRPTQIRQAIVALSERTGLAVDPTARIEDLPTGAQQRVEILKALSRDTTILI
                     LDEPTAVLTPTEARELLQRARELVSNGGTAILITHKLRDALEFADDITVLRRGSTAWS
                     GRASEATEQTLVAAMLGGERIDTGSESVAAAPAGRGTTILSLQDVELRDTTGVERLRS
                     VTLSVHAGEIVGIAAVEGNGQRELLRILAGRTNASSGAVRIPAIVGFIPEDRHRDALI
                     QEFSLRDNVALLGAGTRRGVMSWTEFGKRTRALISDYDVRARDEFARARSLSGGNQQK
                     LVVGREIEGSQTALVAENPSRGLDVQATAAVHARIRAARDAGMAVVIYSSDLDEVLAL
                     AGRVLVVHAGKVSEPSREYESIGRAMLGLAVT"
     gene            5908..6810
                     /locus_tag="VLI40_05630"
     CDS             5908..6810
                     /locus_tag="VLI40_05630"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU96689.1"
                     /translation="MTETLAFVVDMLVHATPLIITGLAVAIAFRAGVWNIGADGQFIA
                     GATAAAWVGVSAPPEIGWLALIAALVAGVLAGAIWAALAAWLRSRFGVLEVISTIMLN
                     FIATYGASFLVRGPLQEPTHVYPQTSGIASGAHMPILVSGTRLHWGFIVALAIAAMAW
                     WVMKYSATGFSVRASGVNPFAARSAGLIDVSRVTAVAFVVSGAIAGMAGAIEVSGVTF
                     ALYENISPGYGYTAIAVALLAGLNPLGVIGTGILFGALETGAGAMQRNIGIPSTTASV
                     IEAVVILVVIAIAQLRANRVTRAA"
BASE COUNT         1386 a         2054 c         2112 g         1258 t
ORIGIN      
        1 tgcagcgcga acccatcccc accattgcga gctccgcaac tgcggaggcc aagttcacgc
       61 ccgaccgcgc gacgatcagc atcagcgtcc agactcgtgc aaccacagcc gcagctgcag
      121 ccgccgacaa tgcgaagaag cagaatgccg ttctggcggc cttacgaggg ttaggattaa
      181 ctaacgaaca gctctccaca acgggctaca gcgtgaaccc ggagtatcgt tacgatccca
      241 accggacgcc gacgctcact ggctacagcg tgacgaacac cgtactcgcg gatattcatg
      301 atctcacgca ggtcggcaag gttctcgata ccgcgcttgc gaacggctcc aacatggttt
      361 cttcgctcga gttctacgcg agcaacacag acgccgctcg ccagaaagcc cttgcagacg
      421 ccgtggcaaa agctcgcgcg gacgctgagg ttgccgccaa ggctgccggt gggtcgcttg
      481 gccctctcat gcatttgagc gttggcggtg gcgggaccta cactccgcct cggccaatgt
      541 ttgccgccaa ggtgatgacg caatccggtg atacgcagat caatcctggc cagcagacca
      601 tcagtgtgaa cgtgtcggcg gactggcgct tcaacccaaa tcgctgattt cgggattttt
      661 cacgttccac agttcttctt ttttcacgtt ccacaaagag ggcagccaat acgctgccct
      721 ctttcctttc cggcggcctc gcatcgattc cgatccttct gagatccata cgcgcccatt
      781 cgccgcgaat agatactctt tcccgctgca agctcatgcg cctgcgccgg gctggtctta
      841 gattcctcca ctctcccctc tgtcaggtag attccgtcaa ttgtccagag tcatagctgt
      901 cgcaaatcaa aaaggcggcg tcgggaagac gacgaccgcg gtgaaccttg ccgcttctct
      961 atcagcagca gaacagcgga cgctcctcgt cgacggagac ccgcagggca acgccacaag
     1021 cggcgttgga atagagccga aggacatcgg caagactgtg tacgaagttc tcctgggtga
     1081 agcaactgtc gccgaagcgc gcaaggtagg cgagcatttc cgcctgctcg acgttctccc
     1141 tgcaacaccc gatctcgccg gcgctgagat cgagctggta gatcagcccc acagggaaca
     1201 gcgaatgcgc gatgccctca agcccgtacg ggatgaatac gacttcatcc ttatcgactg
     1261 cccaccgtcg ctcggactga tcaccatcaa catgctggct gcggcagatg cgctgatcat
     1321 cccgctccag tgcgagtact acgcgctcga agggctgtct cagctcctca acacggtcca
     1381 tcgggtccag cagggtgtca acccgtccct gggtatcgac ggggttctcc tcaccatgta
     1441 cgacgctcgg ctcaacctga gccggcaggt cgccagtgac gcacgtgaat atttcgggtc
     1501 gcaggtcttt gaaacggtga tcccacggaa cgtcagactc gccgaagcac cgagcttcgg
     1561 caagccgatc atcctatacg acgtagcatc cgttggtgcg caagcgtaca tgggagttgc
     1621 gagagaactg attcagcgcg agacactggt ggccagcaac aacggggaag cgtcccaatg
     1681 agcgcggata aaactccctc acctcgccgc ctgggacgag gcctcgacgc cctccttggc
     1741 gaacgaacga ctcaaagacc gcggtcggcg cctgccgaat cagtcgaagc gacaggcacc
     1801 ggcccgtccg agccggccag cgctctccgt gaaatcgcgg tagtggatat ccgccccaac
     1861 cactatcagc caagaaagga attcagcgcc gaagaactga aagagctcac cgatagcatc
     1921 cggacagcag gattgctcca gcccatcgcg gtgcgcagcg taaaggacgg atacgagttg
     1981 gtagccggcg agcgtcgatt tcgtgcggtc aaatcactcg gctggcccac gattccggca
     2041 atagttcgcg actacgacga ccgcacgatg ctcaccctcg cgctgatcga gaatctgcag
     2101 cgcgccgatc tcaatcccat cgaggaagcc gaaggctacg ccagactcgc aagtgagttc
     2161 gacctcaccc agaacgagat cgccgacctg gttggcaagg accgctcgac cgttgcaaac
     2221 ctccaacgcg tacttcagct gccggcggca gtgcgcaaga tgctcgaaac gggcgcactg
     2281 agtcttggcc acgcacggcc gcttctcgca ctcgagaatc ccgcgttggc cacgaagctc
     2341 gccgaagaag ctgttgagca cgggctttcg gtgcgcgcga tcgaggagcg cgtcaggcag
     2401 gacgcgccgc gtcacgacaa gccacaccgc ggccggccgc gcaaggaaga cactcgcccg
     2461 cccgaagtac gacacgtcga ggaccttctg agaaagcgct tccagaccga tgtctcactc
     2521 attcggaaga agcgcgacaa gggcgagctg cgaatccagt tctattccac cgaagatctg
     2581 aaccgcctcc tcgaagccat gggcgccatc gaatgaccga tcaattcccg aatattcaca
     2641 cagttatcaa caaacacagt aagtcgttgt tatgaaagga cttaacgcgt ttacttaccg
     2701 tcctgcatca aggttgtcca cagttatcca cagcttgttc gcaatcgcga tagtggcgtg
     2761 cggaggtggc aaggagcagg gaaagccgga ggccaacgca ttcaaggttg cgctcgtgac
     2821 gacgggttcg atttcagatc agggctggaa cgctggtgcg tacaagggtc ttctggcaat
     2881 cagggattcg ctcggtgcgc acatctccaa cgtccagacg cagacacccg ccgagatcga
     2941 tgagaacttt cggcagtatg gcgcgcaggg atacaacctc gtttttggcc acggcttcga
     3001 ataccaggat ccggcgattc gcatcgcgcc atccttcccg gagaccgcgt tcgtaaccac
     3061 gtcaggcgtg aaaacagcgc cgaacgtcgc tggcgtgtat ttcacattct cggacggcgc
     3121 atacctcgct ggtatcgtcg ctggaggcgc gtctcgtagt ggcgtcatcg gagcgatcgg
     3181 cggtacgcaa ttgccaccag tggttgctgc gttcaaggca ttcgaagccg gcgcgaaatc
     3241 agtcaatcca aacgtgaaac tgcttaccgc gtacgtcggg aactgggacg atgcaagcgc
     3301 cgccagggag caggcgctcg cacagatcgc acgcggcgcc gacgtgatat tccaggacgc
     3361 agacgcggca ggactcggcg ttttccaggc cgcacgacaa tcgaagacgg tgcgtgtaat
     3421 cggatccaac tccgatcaga actcagtcgc gcccgaggtt acgctcggaa gcgtcgtcat
     3481 cgatcttccg cgagcaatga tgatcatcgc gcgcgatgtg aagaccggcg cgttcaaggg
     3541 tcacgtgtac cgactgggtg aaaacgacgg agtggttcgc tgggtggtca atccaaaact
     3601 ggcgagtgag atctcacccg ctactgctgc aaagctcgac tcggcgagaa agctgatcga
     3661 cgcaagaaca ctcaaggtac cggaatgacg acaaccgctc tcatcgttcg atatctggat
     3721 gatttactgg agacggattc tgtaccggat tatccgaatg cgttgaacgg actccagatg
     3781 gcgaatggcg gttcggtaag ccgagtcgct gccgcggtgg atttttcctt acgcactgtt
     3841 acggctgcag cggaagcggg cgcgaatctg ctgatcgtgc atcacggtat gttctggggc
     3901 ggactgcaac cgatacgggg aaagtacttc gaccgaatta gcgcactcct ggcgggagac
     3961 attgcagtct attcatccca tctgccgctg gatcgtcacg cgttgtatgg caacaacgca
     4021 ttgctcgcgg cagagcttgg cctggagccg tcggcggagt tcgctcgttt caggacgata
     4081 tcgatcggcg tgtccggcga gagtgatgtt gtaactgcag agcttgcggc gcgggcagac
     4141 gccttcgcgc gatcgcacgg aggttcggcg cgaacaacac ccatcgacgc cggacgaagg
     4201 acgcgctcgt gggcaatctg caccggcgcc ggcgcgagca ccgaaaccct gagcgaagcg
     4261 cgtgagcgtg gcatcgacac gctgatcgtc ggcgagggtc cgcatcacag cgcggtggat
     4321 gcggacgaga gtggaatcac cgtcatatac gcgggccact acgccacgga gacgctgggc
     4381 gtgcgcgcgc tggcggcgca tgtttcggat cgtttcggtg tgccatggac gttcgtagag
     4441 gcaccgacag gtctctgatc gcgtgagcga cgtcgcactg gagctggcgt cgatcaccaa
     4501 gcgctttggc cggctggcgg cgctggactc ggcgtcactg cgcgcgcggc ggggaaccgt
     4561 gcacgcgctg ctcggggaga acggcgcagg caagacgacg ctcatgcgca tcgcgttcgg
     4621 aatgctgcaa cccgattcgg gccgcattat cgtcgatggc gccaaccgtt cattcgcgtc
     4681 acccgctgat gcgatagacg cggggatcgg gatggtgcat cagcacttta cactggttcc
     4741 ggccatgacg gtggccgaaa acattgcgct gggcggccgc ggtgtctttc gcccaacgca
     4801 gatccgccag gcgatcgtgg cgctatccga acgcacaggg ctcgccgttg atccgactgc
     4861 gcggatcgaa gatctcccga cgggtgcgca acagcgagtc gagattctca aggcgctgtc
     4921 tcgcgacacg acaatactga tactcgatga gccgaccgca gtgctgactc cgaccgaggc
     4981 gagggagttg cttcaaaggg cgcgcgagct tgtaagcaat ggcgggaccg cgatactcat
     5041 aacacacaag ctccgcgacg cgctggaatt cgcggatgac atcacggtgc tgagacgagg
     5101 ctcgaccgca tggagtggac gcgcatctga agcaacggag cagactctcg ttgctgccat
     5161 gttgggcggt gagcggatcg acaccgggag cgagtcagtt gctgccgcac cggcaggtcg
     5221 cggcacgacg atcctgtcgc tgcaggatgt cgaattgcgc gatacgactg gcgtcgagcg
     5281 gctcaggtcc gtcaccctct cggtccacgc aggcgagatc gtcggaatag cagccgtaga
     5341 gggaaacggg cagcgcgagt tgttgcgcat ccttgccgga cgaacgaacg ccagcagtgg
     5401 cgccgtcagg atcccggcga tcgttggttt cataccggaa gaccggcatc gcgatgcatt
     5461 gatccaggaa ttctcgctgc gagacaacgt cgcgctgctc ggcgcaggca cccggcgcgg
     5521 cgtcatgagt tggacagagt tcggcaaacg gacccgggcg ctcatcagcg attacgacgt
     5581 aagagcccgt gacgagttcg ctcgagctcg ctcgctctcg ggtggcaacc agcagaagct
     5641 ggtggtcgga cgggagatag aggggtcgca gactgcgctg gtggcggaga atccatcgcg
     5701 cggactcgac gtgcaggcta ccgcggcggt gcacgcacgt attcgcgctg cgcgtgacgc
     5761 cggcatggcc gtcgtgatct actcgtcgga tctggacgag gtgctcgctc tcgcagggcg
     5821 cgtactcgtc gtgcacgcgg ggaaggtgag tgagccgtcg cgtgagtacg agtcgatcgg
     5881 ccgagcgatg ctgggactgg ctgtcacgtg acggagacgc tggcattcgt agtcgacatg
     5941 ctcgtgcacg cgacgccgtt gattataacg gggctcgccg tcgcgatcgc cttccgggcg
     6001 ggagtctgga acatcggtgc cgatggtcag ttcatcgccg gcgcgactgc agctgcgtgg
     6061 gttggtgttt ccgcaccacc ggagatcgga tggcttgcac tgatagctgc cctcgttgcg
     6121 ggcgtgctcg ccggcgcaat ctgggccgcc ctcgccgcgt ggctgcggtc gcgcttcggt
     6181 gtgctcgaag tgatcagtac gataatgctc aatttcatcg ccacatacgg tgcgtcgttc
     6241 ctcgtacgcg gcccgctgca ggagccgacg cacgtctatc cgcagacgag cggaattgcg
     6301 agtggcgcac acatgccgat cctcgtatcc ggcacgaggc tgcactgggg attcatagtc
     6361 gcgctcgcaa tcgccgccat ggcctggtgg gtgatgaagt attcggcaac cggcttcagc
     6421 gtgcgggcga gcggcgtcaa tccatttgca gctcgtagcg ccggccttat cgacgtgtcc
     6481 agggtgacgg cagtggcgtt cgtcgtgagt ggggcgatcg cgggaatggc tggggcgatc
     6541 gaggtatccg gtgtaacgtt tgcgctttac gaaaacatct ctcccgggta cggttacacc
     6601 gcaatcgcag tggctctgct ggccggactc aacccactcg gcgtgattgg aactggaatc
     6661 ctgttcggcg cgctcgagac cggtgccggt gcaatgcagc gtaacatcgg cattccatcc
     6721 accactgcgt cggtgatcga agccgttgtc atactcgttg tcatcgcgat tgcgcagttg
     6781 cgcgccaatc gggtgacgag agccgcatga
//
LOCUS       DATIMD010000242         2125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2981282, whole genome shotgun sequence.
ACCESSION   DATIMD010000242 DATIMD010000000
VERSION     DATIMD010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2981282"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..590)
                     /locus_tag="VLI40_05635"
     CDS             complement(<1..590)
                     /locus_tag="VLI40_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HSU96690.1"
                     /translation="MKKKTIRDLPDSALCSRRILVRLDLNVPLDDNCHVTDDTRIRAS
                     IPTLQYILERGGRPVVLSHLGRPKGKPDERYSLQPVADVLERLSGHHVVFCETTDTDE
                     AIKATHEMVDGEILLLENTRFLAGEEKNDDGLARTLAELGDVFVNDAFGAAHRAHAST
                     AGVAKYLHPAVAGLLMQKELDYLGGALANPRHPFVA"
     gene            complement(601..1620)
                     /gene="gap"
                     /locus_tag="VLI40_05640"
     CDS             complement(601..1620)
                     /gene="gap"
                     /locus_tag="VLI40_05640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011897301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0019682 - glyceraldehyde-3-phosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HSU96691.1"
                     /translation="MAVRVGINGFGRIGRQVLRAALEQEVADIDFVAVNDLTDTKTLA
                     HLLKYDSVHGTFDCDVSNSDGMLHVDGHDVKVLTERDPALLPWRQLGVDIVLEATGRF
                     TGAADARKHIDAGGARKVIISAPGKGEDITLVMGVNSDRYDARNHHVISNASCTTNCL
                     APMVKVIRDSFGFKHASMVTIHSYTNDQQLLDSPHKDLRRARAAAVSMIPTTTGAAKA
                     TGLVIPEVKGRIDGIAIRVPTADVSLTELTVEVEKPTSIEAVNTAFREAAAEGSLSGF
                     LQYTDVPLVSCDYIGNPYSCIFDSLNTNVIDGTMVKVSGWYDNEWGYASRCVDLMRFV
                     SARLS"
     gene            complement(1634..>2125)
                     /locus_tag="VLI40_05645"
     CDS             complement(1634..>2125)
                     /locus_tag="VLI40_05645"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HSU96692.1"
                     /translation="PGGPAGEIVHKLKYSGWTALAEPMAEQMARLNFPVDVTEERDLL
                     VPVPLAPARARERGYNQSELLARLLGARWGVPVQEALVRRRATETQTRLTPGDRLRNV
                     AGAFATVLDGRELAGRHVVLVDDVVTTAATLNACATALHTGGARIISYVTFGRARAAG
                     DTL"
BASE COUNT          376 a          660 c          686 g          403 t
ORIGIN      
        1 atcgcgacga acggatgcct gggattggcg agcgcgccgc cgaggtagtc cagctccttc
       61 tgcatcagca atcccgcgac cgcgggatgc agatacttcg cgacaccggc ggtggaggcg
      121 tgcgcgcgat gcgcggcgcc gaatgcgtcg ttgacgaaca cgtcgccgag ctcagccagc
      181 gtgcgcgcga ggccgtcgtc gtttttttct tcgccggcca gaaagcgggt gttctcgagc
      241 agcaggatct cgccgtcgac catctcgtgc gtggccttga tcgcttcgtc ggtatcggtc
      301 gtctcgcaga acactacgtg atgaccgctc agccgctcga gtacgtcagc gactggctgc
      361 agcgagtagc gctcgtcggg cttgcccttg gggcggccaa ggtgcgagag gactaccgga
      421 cgaccgccgc gctcgagtat gtactgcagt gtcgggatcg acgcacggat tcgcgtgtca
      481 tccgtaacgt gacagttgtc atccagcggc acgttgagat cgagccgcac gagtatgcgg
      541 cgcgagcaga gcgccgagtc gggaagatcc cggatcgtct tcttcttcaa acgcaaaccc
      601 tcagctgaga cgcgcgctga cgaatctcat caggtcgacg cagcgtgacg catagcccca
      661 ctcgttgtcg taccagccgg acaccttcac catggtgccg tcgatgacgt tggtgttgag
      721 cgagtcgaag atgcaggaat atggattccc gatgtaatcg caagaaacga gcggaacgtc
      781 ggtgtactgc aggaatccgc tgagcgagcc ctcggcggcc gcttcgcgaa aggcagtgtt
      841 cacggcctcg atgctcgttg gcttctcgac ctcgactgta agctccgtga gcgacacatc
      901 cgcggtcgga acgcggatcg cgattccgtc gatcctgccc ttcacttcgg ggatgacaag
      961 accggttgcc ttggcggcgc cggttgtggt cggtatcatc gataccgctg cagcgcgggc
     1021 gcggcggaga tccttgtgcg gcgaatcgag cagctgctgg tcgttggtgt aactgtggat
     1081 cgtcaccatc gacgcgtgct tgaacccaaa cgaatcgcga atgaccttca ccatgggcgc
     1141 gagacagttg gtggtgcatg acgcgttgga gatgacgtga tggttcctcg cgtcgtacct
     1201 gtccgagttg acacccatca cgagcgtgat gtcctcgccc ttgcccggcg ccgagatgat
     1261 gaccttgcgc gcaccgccgg catcgatgtg cttgcgcgcg tcggcggcgc ctgtgaagcg
     1321 gccggtcgct tcgagcacaa tgtcgacgcc aagctggcgc cacggaagga gcgccggatc
     1381 gcgctccgtg agaaccttca cgtcgtggcc gtccacgtgc agcatcccgt cgctgttgga
     1441 cacgtcgcaa tcgaaggtgc catgaacgga gtcgtacttc aggagatgcg caagcgtctt
     1501 cgtatcggtg aggtcgttga ccgcgacgaa gtctatatcg gcgacttcct gttccagcgc
     1561 ggcgcgaagc acctgccgtc cgattcgtcc aaagccgttg atgccaacac gaactgccat
     1621 gtttctatcc tcgctagagc gtgtcgcccg ccgcgcgggc ccgcccgaat gtgacgtaag
     1681 agatgatgcg ggcgcctccg gtgtgaagcg ccgtcgcgca agcgttcagt gtggcggcgg
     1741 tggtaacgac gtcatccacc agcaccacgt gtcgtccggc taattccctg ccatcaagaa
     1801 cagtagcgaa tgcgccggcc acattgcgca gacgatcgcc gggcgtcagg cgcgtctggg
     1861 tctcggtagc cctgcgtcga acgagtgctt cctgcacggg gacgccccac cgcgcgccca
     1921 gaagccgcgc caggagctcg ctctgattgt atccgcgctc gcgagcccgt gctggggcaa
     1981 gcggcacggg aacgagcagg tcgcgctcct cggtgacgtc aacaggaaaa ttaagccgcg
     2041 ccatctgttc tgccattggc tcggcgagcg cggtccaccc ggaatacttg agcttgtgga
     2101 ctatctcgcc cgccggaccg cccgg
//
LOCUS       DATIMD010000243         3124 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3270102, whole genome shotgun sequence.
ACCESSION   DATIMD010000243 DATIMD010000000
VERSION     DATIMD010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3270102"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..618)
                     /locus_tag="VLI40_05650"
     CDS             complement(<1..618)
                     /locus_tag="VLI40_05650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HSU96693.1"
                     /translation="MNVPALAVMIALFVLVTGLGFFSARWRSGDMDLLHEWGLAGGRF
                     GTVVTWFLLGGDLYTAYTFIAVPALVFSAGAIGFFAVPYTIIVYPLVFLIMPRLWSVC
                     RTHGYVTPADFVRGRYDSSTLALAVAISGILATMPYIALQLVGIQVVLGAVGIGGAGL
                     MGDLPLIIAFVILAAYTYSSGLRAPAMIALVKDALIFTVVIAAVIM"
     gene            complement(671..961)
                     /locus_tag="VLI40_05655"
     CDS             complement(671..961)
                     /locus_tag="VLI40_05655"
                     /inference="COORDINATES: protein motif:HMM:NF023183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3311 domain-containing protein"
                     /protein_id="HSU96694.1"
                     /translation="MNASDHPSPRGTHRWRRAILWLLIIPYIGTLWVSSYASITPELW
                     GIPFFYWYQFLWIGISAAITIVVYVVEDRAEGRAEERAEDRADPTRGHGGER"
     gene            complement(1037..2023)
                     /locus_tag="VLI40_05660"
     CDS             complement(1037..2023)
                     /locus_tag="VLI40_05660"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HSU96695.1"
                     /translation="MPPFSVLDLAPVPAGSTPADALRDSLDLAQHAERLGYHRFWLAE
                     HHNMTGIASAATAVVIGYVAGGTRTIRVGAGGIMLPNHAPLMVAEAFGTLESLYPGRI
                     DLGLGRAPGADQRTMRALRRDPGSADTFPQDVLELQAFLSPVQQGQRIQAVPGAGLKV
                     PLWILGSSLFGAQLAAELGLPYAFASHFMPDALMDALDIYRTAFKPSAQLERPYAMAG
                     VNVFAADTDAEARRIFTSAQQQFTNLLRGTPGRLPPPIDDIESYWTPIERAQASARLA
                     MSFVGSHETIARRLTEFIALTGVDEVIVASMIHDHAARVRSYEILAEVIAQG"
     gene            complement(2153..3052)
                     /locus_tag="VLI40_05665"
     CDS             complement(2153..3052)
                     /locus_tag="VLI40_05665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96696.1"
                     /translation="MPHRAALTAAVCTVVCVACALSSCNGGSSNESAASYAGVDARGI
                     PHYLTMRLSRADSMILRRAYGIEDYHRLHVSDSTAQGILEYDTQVKRCRNCYVNSYNV
                     GYISVRRPGESWEQVERRVRSTPAAVFGRAAPPPSQSTATLDPDIRPVVEAMLRDARA
                     AGFQLRVIATYRSPLTEAYLMASDARRTHTLTSNHSYGRALDIVIDDGNRAHARTKHD
                     WIAFRRWVTHYRTTTGESFRVLGAMDRTWDWPHVELPSSKLRFGNVEQAIARGRDCLT
                     PGATITCDFPPHLPPNIGQRFIR"
BASE COUNT          624 a          976 c          966 g          558 t
ORIGIN      
        1 cattatcacg gccgcgataa ccacggtgaa gatgagcgcg tccttcacga gcgcgatcat
       61 tgccggcgca cgaaggccgc tcgaataagt gtatgcggcg aggatcacga acgctatgat
      121 tagcggcaga tcccccatca atcccgctcc accgatacca acggcgccaa gcacgacctg
      181 aatacccaca agctgtagcg cgatgtaagg catggtcgcg agaatgcccg agatcgcgac
      241 tgccagcgcg agcgtgctgc tgtcgtatcg tccgcgtaca aaatccgccg gtgtcacgta
      301 gccatgtgtg cggcacaccg accacagtcg cggcatgatg agaaagacga gcgggtacac
      361 gatgatcgtg tacggcaccg cgaagaaccc gatcgcgccc gcactgaaga ccagcgcggg
      421 aaccgcgata aaggtgtacg ccgtgtacag atcgccgcca agcaggaacc aggtgacgac
      481 agttccgaat cgcccgcctg caagtcccca ctcatgcagc agatccatgt ccccgctgcg
      541 ccagcgggcg gagaaaaatc caagcccggt gaccagcacg aacagcgcga tcatcaccgc
      601 cagtgcaggc acgttcatgc gcgcgctcgg cgatcacgcg acgctgaccg cgatcccgtc
      661 gttgggcagg tcatcgttca ccgccgtgtc cacgcgtcgg gtcagcgcga tcttcagcgc
      721 gctcttcagc gcgaccttca gcgcgatctt ccaccacata gacgacgatc gtgatcgccg
      781 cactgatgcc gatccagagg aactggtacc agtagaagaa cggaatgccc cacagctcgg
      841 gggtgatgga cgcgtaactg gagacccaca gcgttccgat gtacggaatg atgagcagcc
      901 acagtatggc gcgccgccag cggtgcgtgc cgcgcgggct tgggtggtcg ctggcgttca
      961 tgtcggcctc cgcttcgatg tggaacagcg gtaaacatag gccgtcgcgg cggcgcggca
     1021 agcgcgccga cttcgtctaa ccttgcgcga tcacctcggc aagaatctcg tacgatcgca
     1081 ctctcgccgc gtgatcgtgg atcatggacg cgacgatcac ctcgtctacg ccagtcagag
     1141 cgatgaattc cgtcaatctt cgcgcgatcg tttcgtgcga tcccacaaac gacatcgcga
     1201 gtctcgccga cgcttgcgct cgctctatcg gcgtccagta gctctcgata tcgtcgatcg
     1261 gcggtggaag acgaccgggt gttccgcgca acaggttggt gaactgctgc tgcgcagatg
     1321 tgaagatcct gcgcgcctcg gcatccgtat cagcggcaaa gacgttgaca ccggccatcg
     1381 catacggccg ctccagctgc gccgagggct tgaatgcggt gcgatagatg tcgagcgcgt
     1441 ccatcaacgc gtcgggcatg aaatgcgacg cgaatgcgta cggcaatccg agctccgcgg
     1501 cgagctgtgc accgaacagg ctcgatccca gaatccagag cggaaccttg aggccggcgc
     1561 ccggcacggc ctggatgcgc tgcccctgct gcacgggcga tagaaatgcc tgcagctcca
     1621 gtacatcctg cggaaaagtg tcggcgctcc ccgggtcgcg tcgcagtgcg cgcatcgtcc
     1681 gctgatccgc gccgggtgcg cgcccaagtc cgaggtcaat acgccccggg tagagtgatt
     1741 caagcgttcc gaaggcttcc gcgaccatca gcggtgcatg gtttggaagc atgatcccgc
     1801 cggcaccgac gcgaatcgta cgcgttccac cggccacgta tccgatcacg accgcggttg
     1861 ccgcgctcgc gataccggtc atgttgtggt gctcggcgag ccagaatctg tggtagccca
     1921 gtcgctccgc atgctgcgcc agatcgagcg agtctctgag cgcatcggct ggagtcgatc
     1981 cggcgggcac gggcgcgagg tcgagaacgg aaaagggggg catgctcatc ttcccttaca
     2041 gcctagcgaa gaagtgcgtc cagcgcgagt ctggtgtcag agatcggcga tatccacagt
     2101 ccagtcgctt ccgcttgcga caacggccgc aggggcagtc tgcagatgca gtctatcgta
     2161 tgaatcgctg gccgatattc ggcggcaggt gcggcgggaa gtcgcaggta atcgtcgcgc
     2221 caggggtgag acaatcgcgc ccgcgcgcga tggcctgttc aacattgcca aaccgtagct
     2281 tcgacgacgg cagctcgaca tgcggccagt cccatgtgcg atccattgcg ccaagtacac
     2341 gaaacgattc gcccgtcgtc gttcgatagt gtgtcaccca gcgccggaac gcgatccagt
     2401 cgtgtttggt gcgtgcgtgc gcccgatttc cgtcatcgat cacaatgtcg agcgcacgtc
     2461 cgtaggaatg gttcgaggta agcgtatggg tccgtcgtgc atcactggcc atgaggtacg
     2521 cttctgtgag cggtgatcgg tacgtcgcga tcacgcgaag ctggaagccc gcagctctcg
     2581 cgtcgcgcag catcgcctcc acgacggggc ggatgtcggg atcgagagtt gccgtcgact
     2641 gacttggcgg aggtgcggcg cgaccgaata cggccgctgg tgtgctacgt acgcgccgct
     2701 cgacctgctc ccacgactcg cctggtcttc gcaccgatat atacccgacg ttgtagctgt
     2761 tcacgtaaca gttgcggcag cgtttcactt gcgtgtcgta ttccaggata ccctgcgcgg
     2821 tcgagtcgga aacgtgaagc cggtgataat cctcaatacc gtaggcacgt cgaaggatca
     2881 tcgaatcggc acgggagagt cgcatggtca ggtagtgcgg aataccgcgc gcatcgacac
     2941 ccgcgtacga agccgcactc tcgttgctgg atccgccgtt gcatgatgat agtgcgcacg
     3001 ccacacacac tacggtgcat acggccgcgg tcagcgctgc gcgatgaggc actatcataa
     3061 cctgtatcta tcaccggctc acgcccgaga gtcgatatgc tgcgatcgca ttctcgcgca
     3121 gaac
//
LOCUS       DATIMD010000244         1525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1538906, whole genome shotgun sequence.
ACCESSION   DATIMD010000244 DATIMD010000000
VERSION     DATIMD010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1538906"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..525)
                     /gene="bioD"
                     /locus_tag="VLI40_05670"
     CDS             complement(<1..525)
                     /gene="bioD"
                     /locus_tag="VLI40_05670"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: protein motif:HMM:NF024891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HSU96697.1"
                     /translation="MIRIGVTGTDTGIGKTVVSCSIIAAMRAHGLRVAAMKPVESGGT
                     EDAESLGRATGMSHPMELVCPVSLAEPLAPLVAARRANTPIDLGAIDSAFEKLCTGSD
                     AIVVEGAGGLLVPITEDESFATLFGRWDLELVIVAPNRLGTINHTLLTVLAARKYGLR
                     IRAIVLNTITDQPDG"
     gene            complement(522..>1525)
                     /locus_tag="VLI40_05675"
     CDS             complement(522..>1525)
                     /locus_tag="VLI40_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSU96698.1"
                     /translation="ALFARDLVAILPEGLNRVFFSDDGSTAVEVAVKMALQYHANRGS
                     ERSIIVALENAYHGDTFGAMSVSGRGTFTDPFSSLLFDVRRLPDPSTGDTVAALDALL
                     EREGSAVAAIIVEPLLMGAGGMLMYDEATLAALRERARDSNILFIADEVLTGFGRTGP
                     LFACDRAGIAPDIICLSKGLTGGTLPLGATVATDEIFDAFLSEDRHRTLFHGHSYTAN
                     PIACAVGRASLALLDDDCARRRQAINEAHRAGIATVASHPLVRNTRIIGTVAAFDLTV
                     GSGYLSPIGKDLAAFALKHDILLRPLGNVVYVLPPFCATASELADVYAVIGQFLVSL"
BASE COUNT          304 a          487 c          469 g          265 t
ORIGIN      
        1 gccatctggt tgatcggtga tcgtattcag tacgatggcg cgaatacgca agccatattt
       61 acgggctgca agaacggtca gtaaagtgtg attgatggta ccgagtcgat tcggcgcgac
      121 tatcaccagc tccagatccc agcgcccgaa cagggtcgcg aacgattcat cttcggtgat
      181 cggcacgagc aaaccgccgg cgccttcgac gacaatcgca tcgctaccag tgcagagttt
      241 ctcgaacgca ctatcgatcg caccgagatc gatcggcgta ttcgcgcgtc gcgccgcaac
      301 gagtggtgcg agcggctccg cgagcgaaac gggacagacg agctccatgg gatgggacat
      361 gccagtcgcg cgccccaacg actccgcgtc ctccgttcca ccgctctcga cgggcttcat
      421 cgcggcaacg cggagcccgt gcgcgcgcat cgcggcgatt atcgagcagg atacgacggt
      481 cttgccgatc cccgtgtcgg tcccggtgac accgatcctg atcatagcga tacgaggaac
      541 tgtccgatca ccgcgtacac gtctgcaagt tccgacgccg tggcacagaa cggtgggagc
      601 acgtagacca cgttgccgag cggccgcagc agaatgtcgt gtttcagggc gaacgctgcg
      661 agatccttcc cgatcggact gagataccca cttccgacgg tgagatcgaa cgccgcgaca
      721 gtgccgatga ttcgcgtgtt gcgcaccagc ggatgtgagg ccactgtcgc gatgccagcg
      781 cgatgtgcct cgttgatcgc ctgacgcctg cgtgcgcagt catcatcgag caatgcgagc
      841 gacgctcggc ccactgcaca cgcgatcgga ttcgccgtgt acgagtgacc gtggaacagc
      901 gtgcgatgtc ggtcctcgct caggaaagcg tcgaatatct cgtcagtggc gaccgtcgcg
      961 ccaagtggga gcgtgccgcc ggtgagtccc ttgctcaggc agatgatatc cggcgcaata
     1021 ccggcacgat cgcacgcgaa cagcggcccg gtgcgaccga atccggtgag tacttcgtcc
     1081 gcgatgaaga gaatgttgct gtcacgcgcg cgctccctca gcgccgcgag cgtcgcctcg
     1141 tcatacatga gcatgccacc cgcgcccatg agcaacggct cgacgattat cgccgcgact
     1201 gcactgccct cgcgctccag cagcgcgtcg agcgccgcga ccgtgtcgcc ggtggaggga
     1261 tctggcaagc gtctgacatc gaacagcagc gagctgaacg ggtcggtgaa ggtgccgcgc
     1321 ccgctcacgc tcatggcgcc gaaagtgtca ccatgatacg cattctcgag cgcgactatg
     1381 atcgaccgct cgcttcctcg attcgcgtga tactgcagag ccatcttcac cgcaacttcg
     1441 accgcggtcg acccgtcgtc cgagaagaaa acgcggttca ggccctcggg aaggatcgcg
     1501 acgagatcac gagcgaatag cgccg
//
LOCUS       DATIMD010000245         5618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_674772, whole genome shotgun sequence.
ACCESSION   DATIMD010000245 DATIMD010000000
VERSION     DATIMD010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5618
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_674772"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VLI40_05680"
     CDS             <1..375
                     /locus_tag="VLI40_05680"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSU96699.1"
                     /translation="PQRGTIMTKSGSDLVAEAKARVKEIDAANAIMEKQKPDTVFLDV
                     REPNEWNLGHVPGAVHVPRGQLEGKVEGVLDRNKNIVVYCAGGSRSALAADTLQQMGY
                     QHVASLKGGFRGWAEGGGEIED"
     gene            complement(512..1093)
                     /locus_tag="VLI40_05685"
     CDS             complement(512..1093)
                     /locus_tag="VLI40_05685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96700.1"
                     /translation="MNSRKNNPDKHKPAPKDPSRVAGDEIGEAAGGISGVVVGAAIGS
                     VGGPVGTLIGGIAGAVGGWWAGHSVAEAAQEYTVGDDAVYRNHYENSPNRLADRDYES
                     VSPAYRLGHLAAHNPDYRGRPFSQVEDELRRGWNGGARQNYGEWDSVRGYVNDAYDRS
                     ASAIEQQRLRDEANNAAEEADKRLEDSGDMNIF"
     gene            1222..2031
                     /locus_tag="VLI40_05690"
     CDS             1222..2031
                     /locus_tag="VLI40_05690"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HSU96701.1"
                     /translation="MTTALHIGTQGWNYSAWAGVFYPDGTRPVDFLPVYARAFSTVEV
                     DSTFYAVPPATTVRGWYDRTPPDFIFSLKLPQAVTHEARLRDVDGTIDLFFERARELR
                     EKLGSVLVQLGPDFGPEELPALVEFIPRLPRDIHVAIEFRTRGWITPGVLAFLRDYGV
                     AVALVDGPWIPRRWMIELLARPTATFHYIRWMGPNRNLVDHSRIQVDRTRELSKWVDA
                     IEFVPESVTDIYGYVSNFFAGHAPRSARDIQEMLGQESVDPDMLGEQMRLL"
     gene            2096..2827
                     /locus_tag="VLI40_05695"
     CDS             2096..2827
                     /locus_tag="VLI40_05695"
                     /inference="COORDINATES: protein motif:HMM:NF014193.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SURF1 family protein"
                     /protein_id="HSU96702.1"
                     /translation="MMMRRPVRDYVLSVLAIAFVILTMSLGFWQLRRLAQRRAQNAEV
                     VARLAKPPVPVRQLTHDSAALHYRRVLLHGAYDYAHEIKIADRTRLGSPGINIVTPLR
                     IAGTDTAVLVNRGWVYAPDGLTVDLSRWREGDSVNFTGYARPLFKALPGSPVLPGRPD
                     SFRWLDLSALKSRIPYPLYPFVIVLEGSTAANGNIPPRVPPPPLDEGPHKSYAIQWFS
                     FAIIAIVGMYFFLRVPPSQRSPNER"
     gene            complement(2824..3081)
                     /locus_tag="VLI40_05700"
     CDS             complement(2824..3081)
                     /locus_tag="VLI40_05700"
                     /inference="COORDINATES: protein motif:HMM:NF012621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-associated domain-containing
                     protein"
                     /protein_id="HSU96703.1"
                     /translation="MRTVVTIAGMRGEHCKRALFTALTPIAGIHSADVALGRITVEHD
                     GTVTEQELREAIAVTGYVIADVVEERRVLPVMDRSLEAHRI"
     gene            complement(3094..4371)
                     /locus_tag="VLI40_05705"
     CDS             complement(3094..4371)
                     /locus_tag="VLI40_05705"
                     /inference="COORDINATES: protein motif:HMM:NF024598.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycoside hydrolase"
                     /protein_id="HSU96704.1"
                     /translation="MRFLALLLITTLACEQAASRAPENPGHPASAAKATTETGSATGA
                     TTATNAATALVAATTTDTTPIAPTGTAEVIALQKEPRPIRALYVNRFAAQSATKMRHL
                     IAVADSTEINAFVIDIKDEFGLNWHSSDPLLQRNEGKMGKVANLPALVDTLRAHGILP
                     IARMVVFKDSVAARNNPDHVIRKADGTPWRDKKGVTWVNPYSRAIWDYNFRVADEAVK
                     MGFGEIQFDYVRFPEPYKSLPPQVFPEAAGRSKADALNDLLKTARARYNRMGVRMTAD
                     IFGLVTTVRGPLEVGQDWEKISPVVDVVLPMVYPSLYPHGSFGIRIPNAEPHKTIFIA
                     ITSARTRDAKLGIATPEHVRPWLQAFTLGAPHYGPAEIEAQKQAVYDAGYDGWVLWSP
                     GSKYDEFLPALAKKFESHKKSPPLPLPPHTPID"
     gene            4454..5392
                     /locus_tag="VLI40_05710"
     CDS             4454..5392
                     /locus_tag="VLI40_05710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96705.1"
                     /translation="MLRLTRIHSFRPGSARFLILALVAVVGSVGFVACATHTPDPPDA
                     EFLVATADSAFWVRSGATGIHVKAVPMTLAHFGGRFHEVFIADVDRSFDDAVFTGERV
                     YVRDLQSNDSTLVYDDTAIVTMAAHHARAYPDATPLGPKDETPQDPAISASGETDVLE
                     VRGAYALLEHRTFYEMPAGDMHDTVHTAVDLRTGAAATPADMERDSAAEDSNVVRTVP
                     RSWNRKGYELYARGVADGSVSISLHDKSQRAWPLFTVSAHPRIYWLDSPPIDAATRRA
                     LVRAFNSAAAYDETVKYVRYVRPVRRQSGVHLIRHA"
BASE COUNT         1036 a         1720 c         1687 g         1175 t
ORIGIN      
        1 cctcagcgtg gaacaatcat gacgaaaagc ggaagcgatc tcgtcgccga agcaaaggcg
       61 cgagtaaagg aaatcgacgc ggctaatgcg atcatggaga agcagaaacc agatactgtc
      121 tttctggatg tgcgcgagcc aaacgaatgg aatctggggc acgtaccggg cgcagttcac
      181 gttccgcgcg gtcagctcga ggggaaggtt gagggcgttc tggatcgcaa caagaacata
      241 gtggtgtact gtgccggtgg atcgcgctcg gcccttgcgg ccgatacgct gcagcagatg
      301 ggttatcagc acgtcgcgtc gctcaagggc ggatttcgcg gatgggccga gggcggcggc
      361 gagatagagg actgaccctg attgtcattc ccgcgaaagc gggaatccat ctgctgccga
      421 ccaggttcgt gctaccaccg cacttgaaga tcgataacat ggattcccgc ttcgcgggaa
      481 tgacgaattt tcttggactg cccgtaccgc tctagaaaat gttcatgtcg cctgaatcct
      541 ccaggcgttt gtcggcttct tccgcggcgt tattcgcctc gtcacgaaga cgttgctgtt
      601 cgatcgcgct cgcgctgcga tcatatgcgt cgttgacata gcctcggacg gaatcccact
      661 cgccgtagtt ctggcgcgcg ccgccgttcc agccgcggcg cagctcgtct tcgacctggc
      721 tgaacgggcg gccgcgatag tccggattgt gcgccgccag atgacccagc cgatacgcgg
      781 ggcttacgga ttcgtaatcg cgatcggcga gccggtttgg cgagttctca tagtgattgc
      841 gataaacagc gtcgtcgccg accgtgtatt cctgcgccgc ctcggccact gaatgtcccg
      901 cccaccatcc acccacagca ccggcgattc caccgatgag cgtgcccacc ggtccaccta
      961 cagagccgat cgccgctcca accaccacgc ccgagattcc gccggccgct tcgccaatct
     1021 catcgcccgc gactctggac gggtctttcg gagcgggttt gtgcttatcc gggttgttct
     1081 tcctgctgtt catactgcct ccaatgagaa tgacgtccga tcgtaacgat gggcgtccgt
     1141 acccagagtt gagggcaagc tggatgccat gcgacgggtg ttcatcttga cagcgattcg
     1201 attacagcgc cgattcaata catgacgacc gcgttacaca ttggaaccca gggatggaac
     1261 tactcggcgt gggccggtgt gttctatcct gacggcacgc ggcccgtaga ttttcttccg
     1321 gtctacgctc gcgctttttc gaccgtggaa gttgattcga cgttctacgc cgtgccgcca
     1381 gcgacgaccg tgcgaggctg gtacgatcgt acgccgcccg atttcatctt ctcgctcaaa
     1441 cttccgcagg ctgtgacgca cgaagcgcgg ctgcgcgacg tcgatggcac cattgatctc
     1501 ttcttcgagc gcgcgcgtga attgcgcgag aaacttggat cggtactggt acagctcggc
     1561 cccgatttcg gaccggaaga gcttcccgca cttgttgaat ttattccgcg tcttccgcgc
     1621 gacattcacg tcgcgatcga atttcgcacg cgcggatgga taactcccgg cgtacttgca
     1681 tttctgcgcg actacggagt agccgtcgcg ctcgtggacg ggccatggat tccgcgccgg
     1741 tggatgatcg agctgctggc gcgaccgacg gccacctttc actacatcag gtggatggga
     1801 cccaacagaa atcttgtcga tcactcacgc atacaggtcg accgcacgcg cgaattgagc
     1861 aagtgggtgg atgcgatcga attcgttcct gaaagcgtca ccgacatcta cgggtacgtg
     1921 agcaattttt tcgcgggcca cgcgccacgt tccgcgcgtg acattcagga gatgctgggc
     1981 caggaatccg tggacccgga catgctgggc gagcagatgc gccttctgtg aagcgcgctt
     2041 gtacggctct ggctgaattc accgtgcggg taccgcgccg cgctactacc ttcggatgat
     2101 gatgcgtcgc ccagttcgcg attacgtact ctcggtactc gccatcgcct ttgtgatact
     2161 caccatgtca ctcggattct ggcagcttcg gcggttggcg cagcggcgtg cgcagaacgc
     2221 cgaggtagtt gcgcgtctcg ccaagccgcc ggtgcctgtt cggcaattga cgcatgattc
     2281 ggcggcgctg cactaccggc gcgtgctgct gcacggcgcg tatgactatg cgcatgagat
     2341 caaaatcgcg gaccgcacgc gtctcgggtc gccaggaatc aatatcgtca cgccgctccg
     2401 cattgccgga accgacacag cggtgcttgt gaacagaggg tgggtctacg caccagacgg
     2461 tctcaccgtg gatctgtcgc gctggcgcga gggcgattca gtgaatttca ccggctacgc
     2521 gcgaccgctc ttcaaggcgc ttcccggatc tccggtgttg cccggacgac cggactcgtt
     2581 ccgctggctg gatctgagcg ctctgaaatc tcgcatcccg tacccgctct atccgttcgt
     2641 gatcgtactg gaagggagca ctgccgcgaa tggaaacatc ccgccgcgcg tgccgccgcc
     2701 gccgttggat gaaggcccgc acaagagcta cgcgattcag tggttctcgt tcgcgataat
     2761 cgcgatagtc gggatgtact tctttctgcg cgtgccgccc tcgcagcgtt ctccgaacga
     2821 acgctagatt cggtgcgctt ccagcgaccg atccatcacc ggcaggaccc ggcgctcttc
     2881 aacaacgtcg gctatgacgt aaccggtgac tgcgattgct tctcgcagtt cctgctcggt
     2941 caccgtaccg tcgtgctcga cggtgatgcg gcccagtgcg acgtctgcgg agtgaattcc
     3001 cgcgatgggt gtcagcgccg tgaacagtgc gcgtttgcag tgctctccgc gcataccggc
     3061 aatagttaca accgttctca tactgagcgc aacttagtcg attggcgtgt gcggtggcaa
     3121 tggtagcggc ggcgactttt tatgcgactc gaattttttc gcgagtgctg gaagaaattc
     3181 gtcatacttc gaccccggac tccagagcac ccatccgtcg taacctgcgt catacactgc
     3241 ctgtttctgc gcctcgatct ccgctggtcc gtaatgtggc gcaccaagcg tgaacgcctg
     3301 caaccacgga cgcacgtgtt ccggtgtggc gatgccgagc ttggcgtcgc gcgttcgtgc
     3361 actcgtgatg gcgatgaaga tggttttgtg cggttcggcg ttcggaatac ggattccgaa
     3421 tgagccgtgc ggatagagcg acggatatac cattggtagt accacgtcca ctacgggcga
     3481 tatcttctcc cagtcctgac ctacctcgag gggaccgcgc accgtagtta cgagtccgaa
     3541 aatgtcagct gtcatgcgca cgcccatcct gttgtaccgg gctcgcgcgg tcttgagaag
     3601 atcattcaga gcgtcggcct tgctgcgtcc ggcggcttcc ggaaacactt ggggcggcaa
     3661 cgacttgtac ggctcgggga agcgtacgta atcgaactga atctctccga aacccatctt
     3721 caccgcttca tcggcgacgc ggaagttgta atcccatatc gcgcgagagt acggattcac
     3781 ccacgtcact cccttcttgt cgcgccatgg tgttccgtcg gccttgcgaa tcacgtgatc
     3841 cggattgttg cgagccgcga cggaatcctt gaataccacc atccgtgcga ttggcagaat
     3901 tccgtgcgcg cgcaacgtat cgacgagcgc aggaagattc gcaaccttgc ccatcttccc
     3961 ctcgtttcgc tgcagcaacg gatcggatga gtgccagttg agcccgaact catccttgat
     4021 gtcgatgacg aatgcgttga tctccgtgga atccgcgact gcgatcaggt gtcgcatctt
     4081 cgtggcgctc tgcgccgcga atcggttgac gtacaacgcg cgaatcggac gaggctcctt
     4141 ttgcagcgct atcacttccg cggtccccgt cggtgcgatc ggcgtcgtat ccgtcgtcgt
     4201 cgccgctacc agcgcggttg ctgcattagt tgcagttgta gcgccagttg cagaaccagt
     4261 ttcagttgtc gcttttgcag ccgacgcagg gtgaccggga ttctccgggg ccctggatgc
     4321 agcctgctcg caggcgagcg tcgtaatcag tagaagagca agaaatcgca tgcagtacgg
     4381 tgtggcgcga gacacgaggg gaacagcccg ggaaatctac ggcgttgacg gcgctcagag
     4441 tatattcagc gcgatgttac ggctcacacg cattcactct ttccggcccg gatcggcccg
     4501 atttctcatt ctcgcgctcg tggcggtggt gggatcggtg ggattcgtgg cctgcgcgac
     4561 ccacacaccc gacccgccgg acgccgaatt cctggttgcg accgccgatt cggctttctg
     4621 ggtgcgtagc ggtgctacgg gaattcacgt caaggcagtg ccgatgaccc tcgcgcactt
     4681 cggcgggcgc ttccacgaag tgttcatcgc ggatgtcgac cgatcgttcg atgatgctgt
     4741 tttcacgggt gagcgcgtgt acgtgcgcga cctccagtcg aatgattcga cgctcgtgta
     4801 cgatgatacc gcgatcgtga cgatggcggc tcatcatgct cgcgcctacc ccgatgcgac
     4861 tccgctcggc cccaaggacg agacgcccca ggatcccgcg atctcggcat ccggcgagac
     4921 tgacgtgctt gaagtacgcg gcgcatacgc gctcctggaa caccgcacct tctatgagat
     4981 gcccgcgggc gatatgcacg acaccgtaca cactgcggtc gatctgcgca ccggcgccgc
     5041 cgccacgccg gccgacatgg agcgcgactc ggcagcggaa gactccaacg tcgtgcgcac
     5101 agtgccgcgc agctggaatc gcaagggcta tgagctttac gcccgcggcg tcgccgacgg
     5161 ctcggtgtcg atctctctac acgacaagtc tcagcgagcg tggccgctat tcacagtcag
     5221 tgcgcatccg cgcatttact ggctggacag tccgccaatc gacgccgcca cgcgccgcgc
     5281 cctggttcgg gcattcaact cggcggcggc atacgacgag acggtgaaat acgtgcgata
     5341 tgtgcgcccg gtccgtcgcc agtcaggcgt gcacctcatc cgtcatgcgt gacggcccga
     5401 gcgggacggt gtcagaggca caacctggac acggaataca aatgaagggg aaaaccccgc
     5461 gcgaatccga agcgatcatt gccgacctca tgatgcccag tcaggcgaac ggactgcgca
     5521 cgccatcgat attcggtggt gtcgtaatga gcatggtcga caagtgcgcc gctctctcgg
     5581 cgatgaaaca ctcgggcggg caggccacca cgctgtcg
//
LOCUS       DATIMD010000246         4724 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4136602, whole genome shotgun sequence.
ACCESSION   DATIMD010000246 DATIMD010000000
VERSION     DATIMD010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4724
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4136602"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..722
                     /locus_tag="VLI40_05715"
     CDS             <1..722
                     /locus_tag="VLI40_05715"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HSU96706.1"
                     /translation="LATNAPAAAAAPASAPVKNLPAASAPKPPVKPASRVAAAASEVA
                     KESTKEAAKEGSGNTATERRDTIAKRAAQTSAPAAPRETASVTAATPSASATSGGDSN
                     TRSGVVSRPPTKEEVDRALASAAQSKLLKKTPASAAVSTPAPAAPKAIAKQTAASPAR
                     RQASASSAGGYAVQIAAFHTKAPATQMATSLHGRGYEAYVDGTSAPYRVRIGHFTTRA
                     AAAQELAKLKARHIDGFVAER"
     gene            739..3336
                     /gene="mutS"
                     /locus_tag="VLI40_05720"
     CDS             739..3336
                     /gene="mutS"
                     /locus_tag="VLI40_05720"
                     /inference="COORDINATES: protein motif:HMM:TIGR01070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HSU96707.1"
                     /translation="MATPLMQQYREIKARHPGTILFFRMGDFYETFYEDAELSARVLG
                     LTLTSRNNGGASQVPLAGVPVKAGPEYVRRLVQLGHRVSICEQVEDPKTAKGVVRREV
                     VETITPGAAFSDELLDGSRNNFLCAMTGDGKGGTKDATSRAGIAALDLSTGELRLIVV
                     AGAEVEAMLARLSPREMVVPEDMAAGANTILDSILVSHRPAWEFDAAMARDDLQRQFG
                     VRSLDGFGVESSDDIAVGAAGALLRYVRELQPAGVPHLRPPVIERSGGTMPLDEMTRR
                     NLELTESLRGGAGQEGTLINVLDRTLTPMGARLLRQWILAPLTQVDRIESRLDAVAAF
                     ASDAMTRATMRAALDGVRDVERLAAKVAASRITPRELRALGDSIARLPEVESAARRIS
                     GDALHGILASWDACRELGDDIINLLVERPPIALGEDPTVRTGFDDELDELRSLRDGGK
                     DGIARIQSEERARTGINSLKVGYNRVFGYYIEVTNTHGHRIPDDYQRRQTLTGAERYV
                     TPALKEYEERVLTAADRIESRERALFEALRGRIAEEIPRLQCAARVLAELDVLATFGE
                     VAEIEGYVRPRLGDGFDLRIEGGRHPVVERMMPREKFIPNDVTLTSDARVIILTGPNM
                     AGKSTVLRQIGLIVLMAQIGSFVPARSAEIGVVDRLFTRVGASDNLVRGQSTFMVEMS
                     ETSAILHSATSRSLVLLDEIGRGTSTYDGVSIAWAVTEHIHDELGCKTVFATHYHELT
                     QLSDELAAVRNFNVRVREVGEEILFLHTLEPGGADRSYGIEVGRLAGLPRPVLKRARA
                     LLRQLEGDHRMPPRERPGDEMAGQLALFGSEPDPIMEELRGIDPNTMTPLQALDTLAR
                     LVSDAQQKT"
     gene            3342..3845
                     /locus_tag="VLI40_05725"
     CDS             3342..3845
                     /locus_tag="VLI40_05725"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HSU96708.1"
                     /translation="MTIDDSRSVALRAIAATTATAIATLALFVACSKGDGTRTAFDAG
                     TGRPDTYPIMLNKDMPFRYPPALYAEKVQGNVTLRLYVDKDGSVVDDSTRVIESSNIA
                     PLDSAAIKGSRELKFVPAKLRGTPMPVSILFPVYFRHPDAPPPPGDSILKKNVAGTDS
                     AAKRPAK"
     gene            3902..>4724
                     /locus_tag="VLI40_05730"
     CDS             3902..>4724
                     /locus_tag="VLI40_05730"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HSU96709.1"
                     /translation="MSIKRNERPYDNVLETIGWTPLIRLHRVTRGIRTPVYGKAEFFN
                     PGGSVKDRIGLPIIERAEREGKLKPGGTIVEGTSGNTGVGLAIAAALRGYKCIFTLPD
                     KMSQEKVRLLKAFGAEVIVTPTAVAPDHPDNYVMMAKRIAEQTPNAILANQFYNQANP
                     DAHYATTGPELWEQTEGRITHFVASAGTGGTITGVGRYLKERNPDIKIIAGDPTGSIL
                     AEYWRSHGEHKIEGSPYKVEGIGQDKVPGTLDMGVIDEYHTVSDRDAFAMSRRLTR"
BASE COUNT          979 a         1360 c         1570 g          815 t
ORIGIN      
        1 cgctcgcgac gaacgcgcct gcagcggcag cggcgccagc atctgctcca gtgaagaatc
       61 ttccggctgc gagcgcaccg aagccaccag tcaagcctgc gtcgagagtc gcggctgctg
      121 caagcgaagt tgctaaagaa tctacgaagg aagcagcgaa ggaaggctcc gggaataccg
      181 ctacggagcg ccgcgatacg atcgcgaaac gtgcagcgca gacgagcgcg ccggctgcgc
      241 ccagggaaac tgcgagcgta actgcagcga ccccgagtgc cagcgcgacg tccggtggcg
      301 attcgaacac ccgcagtggc gttgtttctc gtcctccaac caaggaagag gtcgatcgcg
      361 ccctggcatc ggccgcgcaa tcgaagttgc tgaagaagac gccggcatcg gcagcagtat
      421 ccacaccagc gccggcagcg ccgaaggcaa ttgcgaagca gaccgcggcg tcgcctgctc
      481 gcaggcaagc aagcgcgtcg agcgcaggtg gttacgcggt tcagatcgcg gcgttccaca
      541 cgaaggcgcc cgcgacgcag atggccacaa gtcttcatgg aagaggttac gaggcttacg
      601 tcgatggcac gagtgcacct taccgcgtgc gcattgggca cttcacgacg cgcgcggcgg
      661 ccgctcagga gttggcgaag ctgaaagcca ggcacataga cgggttcgtg gcagagaggt
      721 aggcgcgtgg ccaagccggt ggccacgcca ctcatgcagc agtaccggga aatcaaggcg
      781 cgacatcccg gtactatcct gttcttcagg atgggcgact tctacgagac gttctacgaa
      841 gacgccgaac tgagcgcgcg cgtgcttggc ctcacactca cgtctcgcaa caacggcgga
      901 gcgtcgcagg ttccgctcgc gggcgtgccc gtgaaagcag gcccggaata tgtgcgcaga
      961 ttggtgcagc tgggtcatcg cgtctcgatc tgcgagcagg tcgaagatcc aaagactgcg
     1021 aagggtgtcg tgcgccgcga agtcgtcgag accatcacgc ccggcgccgc attttccgac
     1081 gagctgctgg acggatcgcg caacaacttc ctctgcgcaa tgacaggcga cgggaaaggc
     1141 ggtacaaaag acgccacgtc acgtgcggga atcgcggcgc tggatctatc gactggtgag
     1201 ttgcgactga tcgtcgtcgc cggcgcggag gtcgaagcga tgctggcgcg attgtctccg
     1261 cgtgagatgg tcgttccaga agacatggct gcgggagcca acacgattct cgattcgata
     1321 ctcgtatcgc accgccctgc atgggagttc gatgcggcga tggcgcgcga cgatctgcag
     1381 cgtcagttcg gtgtgcgctc gctggatgga ttcggagtgg agtcgtccga cgatatcgcg
     1441 gtgggggcgg ccggcgcgct gttgcgctac gtgcgggagc tgcaacctgc cggagttccg
     1501 catctccggc cgccagtgat cgaacgctcg ggcggcacga tgccgctgga cgagatgact
     1561 cgccggaatc tcgagctcac agaatcactg cgtggtggcg cgggtcagga aggaactctg
     1621 atcaacgtgc tcgatcgcac gctcactccg atgggcgcgc gactgttgcg tcagtggatc
     1681 cttgcaccgc tcacgcaggt cgaccgtata gaatcgcgtc tcgatgctgt cgcagcgttc
     1741 gcgtccgacg caatgactcg agcaacgatg cgcgcggcac tggatggtgt gcgcgatgtc
     1801 gagcgacttg cggccaaagt cgcggcgagc cgcatcactc cgcgcgagct gcgcgcactc
     1861 ggcgattcca tcgcgcgatt gccggaggtg gagagtgccg cacgtcgaat cagtggcgat
     1921 gcgctgcacg ggattctcgc aagttgggac gcgtgcaggg agttgggcga cgacatcatc
     1981 aacctgctcg tcgagcgtcc accaattgcg ctgggtgaag atccaacagt tcgtacaggt
     2041 ttcgatgacg agctggatga gctgcgctcg ttgcgtgacg ggggcaagga cggcatcgct
     2101 cgtatccaga gcgaggagcg cgcgcgtact ggaatcaact cgctcaaggt gggctacaat
     2161 cgcgtattcg gctactacat cgaagtgacg aacacgcacg gccacaggat tccggacgat
     2221 taccaacggc ggcaaacgct cacgggtgca gagcggtacg taacgccggc gctcaaggaa
     2281 tacgaggagc gcgttctcac tgcagccgac cggatcgagt cgcgcgagcg cgcattgttc
     2341 gaagcgctac gcggacggat agccgaggaa atcccacgtc tgcagtgtgc tgcacgagta
     2401 ctcgcagagc tcgatgtact ggcgacgttc ggcgaggtcg cggagatcga gggatatgta
     2461 cgaccgcggc tcggcgatgg attcgatctt cgcatcgaag gcgggcggca cccggtagtg
     2521 gagcggatga tgccacgcga gaagttcatt ccgaacgacg tgacgctcac gagcgacgcg
     2581 cgcgtgataa ttctcaccgg tcccaacatg gccggcaagt cgaccgttct gcgtcagatc
     2641 ggcctcatcg tgctcatggc gcagatcggg agcttcgtac cggcgcgatc tgcggaaatc
     2701 ggagtggtcg acagactgtt cacgcgcgtc ggcgcgagcg acaacctcgt gcgcgggcaa
     2761 tccaccttca tggtcgagat gagcgagacg agcgcgatcc tgcactcggc gacttccaga
     2821 tcgctggtcc tgctggacga gatcgggcgt ggcacttcga cgtacgacgg tgtatccata
     2881 gcatgggcgg tgaccgagca catccatgat gagctcggtt gcaagactgt tttcgcgacg
     2941 cattaccacg agctgactca gctgtcggac gagcttgcgg ctgtccggaa cttcaatgtg
     3001 cgcgtgaggg aagtgggcga ggaaattctc tttctgcata cactggagcc cggtggcgcg
     3061 gatcgctcgt acggaatcga ggtcgggcgt ctggccggtc tgccgcgccc ggtattgaaa
     3121 cgtgcgcggg cgctgttgcg tcaattggag ggagatcacc ggatgccacc gcgcgagcgg
     3181 ccgggtgacg aaatggcggg ccaactcgca ttattcggat cggagccgga ccctatcatg
     3241 gaagagctga gagggatcga cccaaacacc atgacgccgt tgcaagcgct cgacacactc
     3301 gcgcgactgg tttcggatgc tcagcaaaag acgtgaatag catgaccatt gatgattcca
     3361 gatcagtcgc gttgcgcgcg atcgcagcca cgaccgcgac cgctatagcg acgctcgcat
     3421 tgttcgtcgc atgttcgaag ggtgacggta ccaggacggc gttcgacgcc ggcacggggc
     3481 gtcccgacac ctatccgatc atgctgaaca aggacatgcc gttcaggtat ccgccggcgc
     3541 tgtacgccga gaaggtccag ggcaacgtga cgctgcgatt gtacgtggac aaggacggat
     3601 cggtggtcga tgattcgacg cgcgtgatcg aatcatccaa tatcgcgccg ctggattccg
     3661 cggctataaa gggatcgcgc gaactcaagt tcgttcccgc caagctgcgc ggcacaccga
     3721 tgccggtgtc gattctgttc ccggtatatt tccgtcatcc agacgcgccg ccaccgccgg
     3781 gggattccat tctgaagaag aacgtcgcgg gcaccgatag tgcggcgaag cgtcccgcga
     3841 agtaagcagc gccaaacgtc gccacgcccg gtaagcaggc gcaaatcgag atagtagcaa
     3901 tatgtcaata aagagaaacg agcggccgta cgacaacgtt ctcgagacca tcgggtggac
     3961 gccgctgatc cgtctgcatc gggtgacgcg tgggatccgg acgccggtgt atggcaaggc
     4021 cgagttcttc aatccgggtg gatcggtcaa ggatcgcata gggcttccga tcatcgagcg
     4081 cgccgagcgt gagggaaagc tcaagccggg cggaacgatc gtggaaggga cgagcggtaa
     4141 tacgggcgtt ggtcttgcga tcgccgcggc gttgcgcggt tacaagtgca tcttcacgct
     4201 gccggacaag atgtcgcagg aaaaggtgcg actgctgaaa gcattcggtg cggaagtgat
     4261 cgtcacgcca actgcggttg caccggatca tccggacaat tacgtgatga tggcgaagcg
     4321 catcgcggag cagacaccta acgcgattct cgcgaaccag ttctacaatc aggccaatcc
     4381 tgatgcgcac tacgcgacga ccggtcccga gttgtgggag cagactgaag gcaggatcac
     4441 gcacttcgta gcgtcggcgg gaactggcgg cacgatcacc ggcgtcggac gttatctcaa
     4501 ggagcgcaat cccgacatca agatcattgc tggcgacccg accgggtcga tactggccga
     4561 gtactggcgc agtcatggcg agcataagat cgaagggagt ccgtacaagg tcgagggaat
     4621 cggccaggac aaggttccgg gaacgctcga catgggtgtg atcgacgagt atcacacagt
     4681 gagtgaccgt gatgcattcg cgatgtcgcg ccgtctgacg cgcg
//
LOCUS       DATIMD010000247         4014 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_384665, whole genome shotgun sequence.
ACCESSION   DATIMD010000247 DATIMD010000000
VERSION     DATIMD010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4014
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384665"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            188..1735
                     /locus_tag="VLI40_05735"
     CDS             188..1735
                     /locus_tag="VLI40_05735"
                     /inference="COORDINATES: protein motif:HMM:NF015094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/UbiB family protein"
                     /protein_id="HSU96710.1"
                     /translation="MRTLYVLSRVLPFILSFRRDVRRWIVIGRPAKRSKSFHARRAER
                     LVATIAKLGPSFVKIGQIFAGRADLLPEPYLSAVSTLTDRVPPVPVEQIEQVILESYG
                     RPVTDMFTDWHRVPLASASLGQVHRARYLGVDVVVKVLRPRIERTVESDVKASDFILK
                     WAEHFFPNPHVLGLRAILAEFARRIGDEMDFRKEGEYAERIRNNFAFNPKVAVPIVFA
                     EMTRQRVLVLEYMEGTRIDALAPLIASGKVDTGYLVRTVMELYVQMMLVDGFFHADPH
                     PGNLLWGDDGRIVLLDFGLVVDVPQSTRLALVRTVFAAIKKDASGVVDGFYSLGLVQE
                     GVDRHVIVRLVETLLGIAFERTTAQERIEFVEHELLADQVLETLYDFPVILPPDMVYF
                     ARTAALIEGLGARYDARFNALLVVAPIALKMRREILTSLGEMDRLEARDPVQVFSGFL
                     RAAGGIVSRAARELSMVAIEAISTIQPSQEIRSDQPRSASTRQITSGAVKAVARVEEP
                     GSGESRT"
     gene            2924..3298
                     /locus_tag="VLI40_05740"
     CDS             2924..3298
                     /locus_tag="VLI40_05740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96711.1"
                     /translation="MRHLFASLAVAVALAPAALAAQSFSGPAALVPASPAPVVAAAPA
                     AAPSMVRPDVAGISVKSDANAPLAVNTAAAAGLHQGEGVALMAVGGAGLIAGLLIGDS
                     PGTAVAIGGLAVGLVGLYEYVR"
     gene            complement(3412..>4014)
                     /locus_tag="VLI40_05745"
     CDS             complement(3412..>4014)
                     /locus_tag="VLI40_05745"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S16 family serine protease"
                     /protein_id="HSU96712.1"
                     /translation="MYYTPMGGDIMFVEASIRRFFGNRANDTTEMAGPGGAVSLILTG
                     QLGDVMKESARAAFTYATNNAARLGIPKDRLGSIEAHIHVPAGAIPKDGPSAGLAIAT
                     ALVSEMSDRPVRRDVAMTGEITLRGRALPIGGLKEKVLGAHRAGIKHIILPKANEPDI
                     EDIPEEVRSQLTFHPVETLTDVLQYALEPAKEEAPFAMAV"
BASE COUNT          720 a         1249 c         1253 g          792 t
ORIGIN      
        1 ggatccacta tcccgtggga atggtcatgg tcaccgtggc cgtgcccgtg ggcgtgcccg
       61 tgggcgtgcc catggccatg cgtgtggccg gtatcgtgct gatcgtgcgt gtgctgggcc
      121 gttcccatcg ctagtttgtc ccgaaggcgg atgcgccttg ccgatgctac ctgaactata
      181 gaaatatatg cgcacgctgt atgtgctctc gcgcgtgctt ccattcatcc tctcgttccg
      241 gcgcgatgtg agacgctgga tcgtgatcgg gcggccggcg aagcgctcga agtcgttcca
      301 tgcgcgccgc gcggaacgcc tcgtggcaac gatcgcgaaa ctcgggccca gcttcgtcaa
      361 gatcggccag attttcgccg gccgcgcgga tctgttgccg gagccatacc tgagcgcggt
      421 cagtacgctc accgaccgtg ttccaccggt tccggtcgag cagatagaac aggtcattct
      481 cgaaagctac ggtcgtccgg tgaccgacat gttcaccgac tggcatcgcg tcccgctcgc
      541 ctccgcgtcc cttggccagg ttcatcgagc acgctatctc ggcgtcgatg tcgtcgtgaa
      601 ggtgctgcgt ccgcgcatcg agcgaaccgt cgagtccgac gtcaaggcgt cggacttcat
      661 cctgaaatgg gccgagcact tcttccccaa tccgcacgtt ctcggactgc gcgcgatact
      721 cgccgagttt gcacgcagaa tcggagacga gatggacttc cgcaaggaag gggagtacgc
      781 cgagcgcatc cgcaacaact tcgcgttcaa tccaaaggtc gcggtgccga tcgttttcgc
      841 agaaatgaca cggcaacgcg tcctcgtgct cgaatacatg gagggaacgc gcatcgacgc
      901 gctcgcgcca cttatcgcga gcggcaaggt cgataccgga tatctcgtgc gtacggtgat
      961 ggagctgtac gtgcagatga tgctggtgga tggtttcttc cacgccgatc cgcatccggg
     1021 aaacctcctt tggggcgacg atggacgcat cgtcctgctc gacttcgggc tcgtggtcga
     1081 cgttccgcaa tcgacgcggc tcgcgctggt gcgcactgta ttcgccgcga tcaagaagga
     1141 cgcgtccggt gtcgtcgacg gcttctactc gctcggtctc gtgcaggaag gtgtggacag
     1201 acatgtgatc gtgcgactcg tcgaaactct gcttggcatc gcgttcgagc gcaccaccgc
     1261 gcaggaacgg atcgagttcg tcgagcatga gctgctcgcg gatcaggtac tcgaaacgct
     1321 gtacgatttt cccgtgatac tgccgcccga catggtgtac ttcgcgcgca ccgccgcgct
     1381 catcgaagga ctcggcgctc gctacgacgc gcgcttcaac gcgttgctcg tggttgcgcc
     1441 gatcgcgctc aagatgcgtc gcgaaattct gacgtcgctg ggcgagatgg atcgtctcga
     1501 agcgagagat ccggttcagg tcttctcggg cttcctgcgc gcagcgggtg gtatagtatc
     1561 gagagccgcg cgcgagctca gcatggtcgc aatcgaggcg atcagcacga tccagccgag
     1621 ccaggagata cgctcggacc agccgagatc cgcgagcacg cgccagatca cgagcggggc
     1681 ggtgaaggcg gttgcgagag tcgaggaacc gggatccgga gagtcgcgca cgtaaacgcg
     1741 aactgcgtgg cgtcgctcga ttctgattcc gcgctgaatc gcggaatcga gttgtgccgg
     1801 gcccatcgcg cgccagtccg gaatctgcat cacgctccat cccgcggcgg tgctgccgta
     1861 gccgtgatta tccgatcccg caacgaccgc aagattgaga gtgtccgcga accggatgat
     1921 cgccgctcta cggtgctgta tggtgccaat gcctttcggc gccgcgtcgc tcagctcgac
     1981 agcatagagt cgcgcgaatc cgtgcttctc gttctcgggg atcatgtcga tgttgcctgg
     2041 aatcgtgaga atgaggagcg gggccgccgc ggtcatggcg agcgcagtgt cgcgcacggg
     2101 atcgtgccag ttgcccttcg ggtctattgc gaacgccgag tcgatcccta tagcgattat
     2161 gtgctcgtac tgatcccgcg cctcgagccc ggggagcaat gtggttccgt cgcccgcgtg
     2221 cgcgggattg agtcgcattc cggccagtgc gccggcaaga ctcttgtggt cagtgacgta
     2281 cgcgacatca aatcccgcat ttgcgtgcca cgtgcgattg cgctccggtg tgaaccacga
     2341 ccgtccgtcc cacgaagagt tggtgtgact gtgaaagtcg attacgacgt cgttcgggtc
     2401 gtgcatcacg atttccgcca ttggccgcgg gatcaccgcg ccggcaccgt acacgatcag
     2461 aattcctgac agcgtcgcga gcgcgacacc gacttcacga aaaattgatg tgcgcacgga
     2521 tcgcgcacgc agcattctcc agatgatgac acacaggact accgtgccga gcaccgccgc
     2581 gtgctgttgc agcgacagca gcgtcagagc gtccagcacc gtgaagatcg gcgcgaacat
     2641 cgtgtatgcc gccgagtgga tgagggtcgc gtcggcagcc ggaagccccg tctccgcgtt
     2701 caggatcggc gtcgccccga ccagggaggt agcgaggacg agaatagccg cgaatgcggc
     2761 taccatgaag ccaatcgagc ttttggagaa tctcaccgcc ggaaatctat tttgacgatc
     2821 gcggcgcggc gattgcgata tgggtatccg cgtccgccgt aacagcaagc aggccggccg
     2881 ccgcgtaact tagacgcccc accacaatga aacgaggaac ccaatgagac atctgttcgc
     2941 ttcgctagct gttgccgtcg cacttgctcc tgctgcgctc gccgcgcaga gcttttccgg
     3001 acctgccgcg ctcgtgccag cttcaccggc gccagtggtt gcagcagccc cggccgctgc
     3061 gccatcgatg gtccgcccgg acgtcgccgg catcagcgtc aagtccgatg cgaacgctcc
     3121 gctcgccgtc aacacggcgg ctgcagcggg tctgcatcag ggcgaaggcg tggcactgat
     3181 ggccgtgggc ggcgccggcc tgatcgccgg attgcttatc ggcgatagcc ccggtacggc
     3241 ggtcgcaatc ggcggcctgg ccgtggggct ggtgggactg tacgaatacg tgagatagtc
     3301 ccgggacagc tggccgatcc tggcaattcg aacaatcgta cgaatgaaaa gaccgggaga
     3361 tcaaatgaga tctcccggtc tttttgccac gctctactga actttactga tttacacagc
     3421 catcgcgaac ggagcctctt ccttcgccgg ctccagtgcg tactgcaaca cgtccgtcag
     3481 cgtctccacc ggatggaagg tcagctgcga cctcacctcc tcaggaatgt cctcgatgtc
     3541 gggctcattt gctttgggca gaatgatgtg cttgatgccg gcgcggtgag cgccaagcac
     3601 cttttccttc aatccaccga tcggcaacgc acggccgcgc agtgtaatct cacccgtcat
     3661 cgcaacgtcg cgacgaacgg gacggtcact catctctgaa accagcgccg ttgcgatcgc
     3721 gagtccggca ctcgggccgt ccttcggaat cgctcccgcg ggaacgtgga tgtgcgcttc
     3781 gatggatccg agtctgtcct tcgggattcc aagtcgcgcc gcgttgttcg tcgcgtacgt
     3841 gaacgccgca cgcgccgatt ccttcatgac gtcgccaagc tgaccggtga ggatcagcga
     3901 caccgcaccg cccggtccag ccatttccgt ggtgtcgttc gcgcggttgc cgaagaagcg
     3961 cctgatcgac gcttcgacga acatgatgtc gccgcccatc ggcgtgtagt acat
//
LOCUS       DATIMD010000248         5179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_96372, whole genome shotgun sequence.
ACCESSION   DATIMD010000248 DATIMD010000000
VERSION     DATIMD010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5179
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96372"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1087
                     /locus_tag="VLI40_05750"
     CDS             <1..1087
                     /locus_tag="VLI40_05750"
                     /inference="COORDINATES: protein motif:HMM:NF012562.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96713.1"
                     /translation="ELSDDARSGHPRLHVLDNIDPITVAAVLDRLALERTLFIVTSKS
                     GGTAETMSQFLIAHERVTNAGLNVADHFVFVTDPKTGALRPLAAELGVAALDIPPGVG
                     GRYSVLTPVGTLPAALLGISAADLLVGAGEMLDKCATTDLTDNPAGIIGSLLYMSDVR
                     HGRVVDVLMPYADPLRDFAAWFVQLWAESLGKHREDGKSVGSTPLPALGATDQHSQVQ
                     SFMEGPANKAIMFIAVEDHGTDLVIPSAFKHVTELGYLGGHTLGELLNIEQQATAGAL
                     AKRGRSNLTIRMERVDARGVGALMMMFELATAYAGQMYGVNAFNQPGVELGKQFAYAL
                     LGRPGAEAARAQWDALPKPDPRWSQGR"
     gene            1096..2511
                     /locus_tag="VLI40_05755"
     CDS             1096..2511
                     /locus_tag="VLI40_05755"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HSU96714.1"
                     /translation="MTQTKTEHLFEGAVTVRNGTVSITDAARVAGPYMDTLVRQAVFG
                     NDDQKADARWLIWEIAQAVGIHPASIHDLYIARGKGAFDDLTVPAINVRGMAYDTARA
                     VIRAANRINAGAFVLEIARSEIAYTDQRPGEYAAVMLAAAIREGFRGPIFIQGDHFQI
                     SAKKFATNPDQESGAVKQLAVEAVAAGFYNIDIDTSTLVDLSKPTLEEQQRTNVEQCA
                     DIAAFIRGLQPAGITISLGGEIGEVGTENSTPEELRAYMDGFNSLLGRQSPGTEGLSK
                     VSVQSGTSHGGIVLPDGSIKEVAIDFDTLTRLSDIARKEYGLAGAVQHGASTLPDELF
                     HKFPGTGTCEIHLATNFQNMLFDHMPDSLRKEIYAWLDVNTKDERKPTDTDEQFYYKT
                     RKKALGPFKRKIWDMPADVKETMAKAYDEKFGFLFRQLNIHDTRSLVAKYVKTPPQHR
                     PMPHPDLAVVEAAPDDADLSD"
     gene            2518..2808
                     /locus_tag="VLI40_05760"
     CDS             2518..2808
                     /locus_tag="VLI40_05760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96715.1"
                     /translation="MSDRDASAELRQLAHDVRNALNGVAVNLEVARSRAERGADVTQV
                     APFIQTAVQQLDAATRLHKRYADLVAGIAESPAARGTAHPADSPPVDSNPHS"
     gene            2823..4154
                     /locus_tag="VLI40_05765"
     CDS             2823..4154
                     /locus_tag="VLI40_05765"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSU96716.1"
                     /translation="MAASTKHRILVADDEQAITQGLSAILSDEGYDVSICADGQKAID
                     ELQNGDYGVVLADLMMPRLDGLSLLKTLQDRSIPTECIIITGQATVDSAVQAMREGAY
                     DYIEKPLNSEKLNRLKALIPKALEKYAIGQKNRELASKLETLTHYGELTGQSEEMRAV
                     YQIIDAVAPSSASVLILGESGTGKELVARAVHSKSDRAKGPFFALNCAALPKDILENE
                     LFGHEKGAFTGSINEKPGAFEMADGGTIFLDEVAEMPTDIQVKLLRAIESRSVRRLGG
                     KKEIAVDIRIVAATNMDLQKALEDGELREDLYYRLAVVELFLPALRERVSDIQLLANE
                     FLLRFSRQNGKQLTGFDEDAWAWIHAYHWPGNVRELKNAVERAVIMARGTVVTAQDIM
                     PRHLRIAAAAASAATPASAPAAAPGKAASKKTATSKTSAKSKSNTTRTGKR"
     gene            4157..4561
                     /locus_tag="VLI40_05770"
     CDS             4157..4561
                     /locus_tag="VLI40_05770"
                     /inference="COORDINATES: protein motif:HMM:NF024143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HSU96717.1"
                     /translation="MRDFEREPFVVIERDEPGVGTLLLGVAIGAGLALLLAPRSGAET
                     RRMIESRARRAGERVRDVATDVADNVTSQVNDVRDRVSERVGAARRAVRRRQDQVLDA
                     VDAGRYAASEARSELERRIAENKAARREANSL"
     gene            4572..>5179
                     /locus_tag="VLI40_05775"
     CDS             4572..>5179
                     /locus_tag="VLI40_05775"
                     /inference="COORDINATES: protein motif:HMM:NF015587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhjD/YihY/BrkB family envelope integrity
                     protein"
                     /protein_id="HSU96718.1"
                     /translation="MGRKRPWFKRFWVGFADYVRRVWDNSGDDNIFFLAGGISFNILI
                     AIVPFLLLFATSLTYLLNQSTLAASDEIVSLVNRFLPPTTSEPVTSVVTKIIAARGTV
                     GLYAAIGFIWFSTRLFGSLRSILNAIFDIEVDRGIIDGKLYDVKVTVVSSLLFVIYTA
                     LSAYIAIASSRGVAVLAALGIRQDVMGTLEYTLGRIVAFVFIG"
BASE COUNT         1044 a         1586 c         1614 g          935 t
ORIGIN      
        1 tgagctctcc gatgacgcgc ggtcaggcca tccgcgcctg cacgtgctcg acaacatcga
       61 tccgataact gtcgctgctg tcctcgacag gctcgctctg gagcgcacgc tgttcatcgt
      121 cacgtccaag tccggcggca cggcagagac gatgtcgcag tttctgatcg cccatgagcg
      181 cgtgacgaat gcgggactca acgtcgccga ccacttcgtg tttgtcacgg atcccaaaac
      241 cggcgcgctc cggccgctcg ccgccgagct cggagtcgcg gcgctcgaca ttccaccggg
      301 tgtcggcgga cgatacagcg tgctcacgcc ggttggaaca ctgccagcgg cattgctcgg
      361 aatcagcgcc gcggatcttc tcgtcggcgc gggcgagatg ctggacaagt gtgcgacgac
      421 ggacctcacg gacaatccgg cgggaataat cggatcgctt ctctacatga gcgatgtgcg
      481 ccacggacgg gttgtggatg tgctcatgcc gtatgccgat ccgctgcgcg atttcgctgc
      541 ctggtttgtc cagctgtggg ccgagtcgct cggcaagcat cgtgaggatg gcaagtccgt
      601 cggaagcacg ccgcttccgg cgctcggagc aacggatcag cacagccagg tccagtcatt
      661 catggaagga ccggcgaaca aggcgataat gttcatcgcc gtggaagatc acggcaccga
      721 cctcgtcatc ccgtccgcat tcaagcacgt cactgagctc ggctacctcg gcggccacac
      781 gcttggcgaa cttctcaata tcgagcaaca ggctacggca ggcgcgctgg ccaaacgcgg
      841 tcgcagcaac ctgaccatcc gaatggaaag ggtcgatgcg cgcggcgtcg gcgcgctcat
      901 gatgatgttc gagctcgcga ccgcgtacgc cggtcagatg tacggggtca acgcattcaa
      961 tcagcccggc gtcgagctgg gcaaacaatt cgcttacgcc ctcctgggca ggcccggtgc
     1021 cgaagctgcc agagcgcagt gggatgccct tccgaagccc gacccgcgct ggtcgcaggg
     1081 acgctaaatt caaccatgac tcagacgaaa accgaacact tgttcgaagg cgccgtcacc
     1141 gtcaggaacg gcactgtttc catcaccgat gctgcccgcg tcgccggacc gtacatggac
     1201 acgctcgttc gacaggccgt gttcggcaac gacgaccaga aggccgatgc gcgctggctg
     1261 atctgggaga tcgcccaggc tgttggcatt catccagcgt cgatccacga cctttacatc
     1321 gcgcgcggca agggtgcgtt cgatgacctg accgttcccg cgatcaatgt gcgtggaatg
     1381 gcatacgaca cggcccgcgc cgtaatccgc gccgcgaaca ggatcaatgc aggcgcgttc
     1441 gtgctcgaga tcgcgcgctc cgagattgcg tacaccgacc agcggcctgg cgagtacgcc
     1501 gcggtaatgc tcgcggcggc aatacgcgag ggcttccgcg gtccgatctt cattcagggc
     1561 gaccacttcc agatcagcgc gaaaaagttc gcgaccaatc cggatcagga gtccggcgcg
     1621 gtcaagcagc ttgccgtgga agcagtcgcg gccggcttct acaacatcga catagacaca
     1681 tcgacgctcg tcgatctctc caagccgacg ctcgaggagc agcagcgcac caacgtcgag
     1741 cagtgcgcgg acatcgctgc gttcattcgc ggcctacagc cagccggcat caccatctcg
     1801 ctcggcggcg agatcggcga agtcggaacc gagaattcga cgcccgaaga gctgcgtgcc
     1861 tacatggacg gcttcaacag tcttctgggc cggcaatcac cgggcaccga aggtttgtcc
     1921 aaggtcagcg ttcagtcggg cacgtcgcac ggtggcatag tgcttcccga cggatcgatc
     1981 aaggaagtcg cgatcgactt cgacacactg acgaggttgt ccgatatcgc gcgcaaggaa
     2041 tacgggctcg caggtgcggt gcagcacggc gcatcgacac tccctgacga gctcttccac
     2101 aagttccccg gcactggaac gtgcgagatt catctcgcaa cgaatttcca gaacatgctg
     2161 ttcgatcaca tgcccgactc gctgcgcaag gagatctacg cgtggctgga cgtgaacacg
     2221 aaggacgagc gcaagccgac cgacacggac gagcaattct attacaagac gcgcaagaag
     2281 gcgctcggac cgttcaagcg aaagatctgg gacatgcccg ccgacgtgaa ggaaacgatg
     2341 gcgaaggcgt acgacgaaaa gttcggtttc ctcttcaggc agctgaacat tcacgacaca
     2401 cgttccctgg tcgcgaagta tgttaaaact cccccgcaac atcgtcccat gccgcatccc
     2461 gacctcgctg tcgtcgaggc ggcacctgac gacgcggatc tgagtgactg agcctttgtg
     2521 agcgatcgtg atgcgtcggc cgagctgcgg cagttggccc acgatgtccg gaacgcgctc
     2581 aacggcgtag ccgtcaacct cgaggttgcg cgcagccgcg ccgagcgcgg tgcagatgtc
     2641 acgcaggtag caccgttcat tcaaacggcc gtgcaacagc tcgatgctgc gacacggctg
     2701 cacaaacgtt acgccgatct ggtcgctggt attgccgaat ctccggcggc gcgcggtact
     2761 gcgcatccgg ctgattcccc tccagtagat tccaatccac attcctgagc aactaccgac
     2821 gcatggcagc tagcacgaag caccgaatcc tcgttgccga tgacgagcag gcgataaccc
     2881 agggactgag cgcgattctt tccgacgaag gctacgacgt gtcgatctgc gccgatggcc
     2941 agaaagccat cgatgagctg cagaacggcg actacggggt ggttctcgcc gatctcatga
     3001 tgccaaggct cgatggcctt tcgctgctga agacgcttca ggaccggagc attccgactg
     3061 agtgcatcat catcaccggc caggcgacgg ttgattccgc ggttcaggcg atgcgtgagg
     3121 gcgcgtacga ttacatcgag aagccgctca actcggaaaa gctgaaccgc ctcaaggcgc
     3181 tcattcccaa ggcgctcgag aagtacgcga ttggccagaa gaaccgcgag ctcgcctcga
     3241 agctcgagac gctcacgcat tacggcgagc tgaccggcca gtccgaggag atgcgcgcgg
     3301 tttatcagat catcgacgcg gtcgcgccgt ccagcgcatc agtattgata ctcggtgaat
     3361 ccggtacggg aaaggaactg gtcgcgcgcg ctgtgcattc caagagcgac cgtgccaagg
     3421 gtccgttctt tgcgctcaat tgcgccgcgc ttcccaagga tattctcgag aatgagttgt
     3481 ttggccatga aaagggcgcg ttcaccggct ccatcaacga gaagcccggc gcattcgaga
     3541 tggccgacgg tggcacgatc ttcctcgacg aagtcgccga gatgcccacc gatatccagg
     3601 tgaagctgct gcgtgccatt gagagtcgca gcgtgcgcag gcttggcgga aagaaggaga
     3661 tcgcggtcga catccgcata gttgcagcga cgaacatgga tctccagaag gctctggaag
     3721 acggggaact gcgagaggat ctgtactatc gtctcgcagt tgtcgagctg ttcctgcccg
     3781 cgttgcgcga gcgcgtgagt gacatacagt tgctcgcgaa tgaattcctg ctgcggttct
     3841 cgcgccagaa tggcaagcag ctcactggct tcgacgagga tgcgtgggcg tggattcacg
     3901 cgtatcactg gcccggcaac gttcgcgagc tcaagaatgc agtggagcgc gccgtgatca
     3961 tggcgcgcgg gacggtcgtc acggcacagg acataatgcc tcggcatctt cggatcgctg
     4021 ccgccgccgc gtccgctgct acgcccgctt ctgcgcccgc tgctgcaccc gggaaggcgg
     4081 catcgaagaa gacagcaacg agcaagacat ccgcaaaatc gaaatccaac acgacccgga
     4141 cagggaagag gtagccatgc gagacttcga acgtgagcca ttcgtggtga tcgagcggga
     4201 cgaaccaggt gtcggaacgc ttctgcttgg cgtggcgatc ggcgccggac tcgcgcttct
     4261 gctcgcgccg cgaagtggcg ctgagaccag gcgcatgatt gaatcgcgcg cgcggcgtgc
     4321 cggagagcgc gtacgcgacg tcgcgacgga cgtcgccgac aacgtgacgt cgcaggtgaa
     4381 tgacgtgcgc gatcgtgtca gcgagcgcgt cggcgccgcg cgcagagccg tccgccgccg
     4441 gcaggaccag gtactcgacg cggtggatgc gggtcggtat gctgcaagcg aagcgcgttc
     4501 tgaactcgag cgcaggatcg ccgagaacaa ggcggcgcga cgcgaagcaa acagcctgta
     4561 aggttgcgcc ggtgggccgg aagcgcccgt ggttcaaacg attctgggtt ggattcgcgg
     4621 actacgtgcg ccgtgtctgg gataacagtg gcgacgataa catctttttc ctcgcgggcg
     4681 gaatctcgtt caacattctg atcgcgatcg tcccgttcct gctgctgttc gccacctcgc
     4741 tcacgtactt gctgaaccag tccacgctcg ccgcatcgga tgagattgtg agcctggtca
     4801 atcgcttcct gccgccgacc acgagcgagc cggtgacgag cgtcgtcacg aagatcatcg
     4861 cagcgcgcgg cactgtcgga ttgtacgccg cgatcggctt catctggttc tcgacgcggt
     4921 tgttcggatc gttgcgctcg atactcaacg cgatattcga catcgaggtg gatcgcggca
     4981 tcatcgacgg caagctgtat gacgtgaagg tgaccgtggt ctcgtcgctg ctgttcgtga
     5041 tatacacggc actgtctgcg tatatcgcca tagcgtcatc gcgcggagtg gcggtgctcg
     5101 ccgcgctcgg gatccgtcag gacgtgatgg gcacgctgga atacacgctc ggaagaatcg
     5161 tcgcgtttgt cttcatcgg
//
LOCUS       DATIMD010000249         4137 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3847580, whole genome shotgun sequence.
ACCESSION   DATIMD010000249 DATIMD010000000
VERSION     DATIMD010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4137
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3847580"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1223)
                     /locus_tag="VLI40_05780"
     CDS             complement(<1..1223)
                     /locus_tag="VLI40_05780"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 protein"
                     /protein_id="HSU96719.1"
                     /translation="MHSKNATNHLSAAMFVAVAALLPLALPISSAGAQVGGKSSSAAE
                     SDAMRWADSVLTTMTLKDRAAQMVWPNIYADYVPDDATSWRKVTSYVRDQKVGGILMS
                     IGSPIEMAVKLNALQRMSALPLLVGSDLETGAGMRARGGYFVPNGIDLGGATVFPSEM
                     AYGAANDTALTYTEGRITAIEGRALGIHIDFSPVLDVNNNPANPVINTRSYGEDPHEV
                     ARLGVSFIHGLQDNGMIATAKHFPGHGDTETNSHLALPIVNVSRARLDTVELVPFRAA
                     IKAGVGAVMTFHGSMPALDSSGAPGTLSSNVVTGLLRNELGFNGLVISDAMDMKGVTD
                     KYGSTEAIKRAVAAGVDVLIQPLDVPAAIDAVVAGVSEGRYSETRVSEAARRILAMKR
                     KLNLDRDRFANLDSLR"
     gene            1621..2376
                     /locus_tag="VLI40_05785"
     CDS             1621..2376
                     /locus_tag="VLI40_05785"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HSU96720.1"
                     /translation="MTRAAQKPVARTASSVDSLVECSPVAAPVRKKPVVRRKTPVRKV
                     ASAVAPTPKPKTTVKPHRPIVRRARRVAPKARPAAAHSTTVVMCRPVRPIPELAKGTP
                     TEQSVIPVPQLAPVTPPPTVTEEDAPPLFVSTAPGMPMTVTGGGRSWLPFGIVPAIFI
                     PFVHNGRTHNGSTRPVDTTSTPPDTTTKTPPDTTTKTPPDTTSTPVVPPPGGTPPDTP
                     IGPPITTPEPSTLVLLGSGLVGLVGAAQRRRRK"
     gene            complement(2387..2965)
                     /locus_tag="VLI40_05790"
     CDS             complement(2387..2965)
                     /locus_tag="VLI40_05790"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HSU96721.1"
                     /translation="MDKHRMEAFSDGVVAILITIMILELHPPPGTDWTALRPIIPSVL
                     TYVLSFVYLGIYWNNHHHMLQATDRINGGILWANLHLLFWLSLVPFVTAWMGRNYKDS
                     VPTVLYGAVLIMAALAYTILQTAIIKEEGRDSRLAIAVGQDRKGMASLLLYASGILVA
                     FVYPWIADALYITVALIWLVPDPRIEALLQDR"
     gene            complement(3200..>4137)
                     /locus_tag="VLI40_05795"
     CDS             complement(3200..>4137)
                     /locus_tag="VLI40_05795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96722.1"
                     /translation="MTSWSRVTMIEASHFDFNVAYASVDRHQLQDFEPYIYRTRDAGK
                     TWQKITTGLPANGYVHSVKEDPKRQGLLFAGTELGVHISFDDGESWQPFQLNLPVTSM
                     RDFEIYENDLIVATHGRGFWVIDDISPLRQINDTIGNAEAYLFKPGDSINMIEGGDNG
                     TPLQKDEPQAPNPPNGAAIDYYLKTAATGPVTIDILDSTGAVLHTFSNEPQRGAPAGG
                     RRGNAGGIPNTSALWREPPAPFATSAGMHRVVWDPIKPEAGAAGGGGFRRRGTPVSGT
                     FTAKLTVNGKSYTQSFVVKPDPRSPTGPTQPYFEG"
BASE COUNT          777 a         1274 c         1261 g          825 t
ORIGIN      
        1 cgcagcgaat cgaggttcgc aaagcgatcg cggtccagat tcaacttgcg cttcatggcg
       61 agtatgcgcc gcgcggcttc ggatacacgc gtctcgctgt atcggccctc actcacgcca
      121 gccacaaccg cgtcgatagc cgcggggacg tcgagcggct ggatcagcac gtcgacaccg
      181 gccgccacgg cgcgcttgat cgcttcggtg gacccgtact tgtcggtcac gcccttcatg
      241 tccatggcgt cggagataac gagcccgttg aaccccagct cgttgcgcag gagaccggta
      301 acgacgttgg atgagagcgt gcccggtgcg ccgctgctgt ccagcgccgg catcgagccg
      361 tggaacgtca tcacggcgcc gactccggcc ttgatcgccg cgcggaacgg gaccagttcc
      421 acggtatcga gccgagctcg gctcacattc acgatcggca gcgcgaggtg ggaattggtc
      481 tccgtgtcgc cgtgccccgg gaagtgcttc gccgtggcga tcatcccatt gtcctgcaat
      541 ccatggatga acgaaactcc gagccgcgcg acctcgtgtg ggtcctcacc gtacgagcgc
      601 gtgttgatga cagggttggc cgggttgttg ttgacgtcga gtacgggaga aaaatcgatg
      661 tggatgccga gtgcacgacc ctcgatcgcc gtgatccgtc cttccgtata ggtaagcgcg
      721 gtgtcgttgg ccgcgccgta cgccatctcc gatggaaaga ccgtggcacc gccgaggtcg
      781 atcccgttgg ggacgaagta accgccgcgc gcgcgcatgc cggcacccgt ttcgagatcc
      841 gagcccacca gaagaggcag tgcactcatg cgctggagcg cgttgagctt gaccgccatc
      901 tcgatgggcg acccgatgga catcaggatc ccgcccacct tctggtctct gacgtaggac
      961 gtgaccttgc gccagctggt cgcatcgtcc ggtacgtagt cggcatagat gttcggccag
     1021 accatctggg cggcgcggtc tttcagcgtc atcgtggtga ggaccgaatc ggcccaccgc
     1081 atggcgtcgg actcggcggc ggacgacgac ttgccgccca cctgcgcgcc ggcggacgag
     1141 atcggcagcg ccagcggcag cagcgcggcg accgccacga acatggcggc gctcagatga
     1201 ttggtcgcgt ttttcgaatg catgacgtca aaggtaattg ccgggtaagt cgccgagaac
     1261 atcaatgatt tgtgtggtat gtacgcaaca gacggtgcgg ttttagcggt actcaaacca
     1321 caccgattcc ggtcggtgtg tcgcatgccg gagcattttc gggattttag ggcgattttc
     1381 tcgtcaaaat ccaaaattcg ttgctgcgcg atatgaaatc tgggactatt ttactcgtaa
     1441 cttttgtttg caggtcgtgg cccagagtgt gtgtatgaaa gcatcgttgg cgttccacgc
     1501 tccttggcaa ttagcctcct tatgaagcac cgttcactca ctatagtatc cgtagcggtt
     1561 tctcttgctg gccttgcgct tgcgagacct gcgttcgcgc aggccgttag acgtgatacg
     1621 gtgacccgcg cggctcagaa gccggtggcg cggacggcat cttctgtcga ttcactggtc
     1681 gagtgctcgc cggtggcggc tccagtcagg aaaaagccag tcgtgcggcg caagactccc
     1741 gtccgaaagg tggcctcagc cgtagcaccc acaccaaagc cgaagacgac ggtcaagcca
     1801 catcgtccga tagtgcgtcg cgcgcgccgt gtcgctccca aggccaggcc agcggcggct
     1861 cattcgacaa ccgtcgtgat gtgccgcccc gtgcgcccga tccccgagct tgccaagggc
     1921 accccaaccg agcagtccgt tattcccgtg ccgcagctcg cgcctgtaac accgccgccc
     1981 acggtgacgg aagaagatgc tccgccgctc ttcgtatcga ctgcaccggg aatgccgatg
     2041 acggtaacag gtggtggccg gtcatggctt ccatttggca tcgtccccgc catcttcatc
     2101 ccgttcgtgc acaacggcag aacgcacaac ggttccacga ggccggtcga tacgacgtcg
     2161 actccacctg atacaactac aaagacgcct cccgacacta cgacgaagac acctcctgac
     2221 acgacgtcga ctccggttgt accaccacca ggcgggacgc ctcctgacac gccgatcggt
     2281 ccgccgatca ctacaccgga gccgagtacg ctcgtgttgc tgggatcagg attggtcggt
     2341 ctggtgggcg cggctcagcg tcggcgcaga aagtaacaag ccgtcatcac ctatcctgca
     2401 gcagcgcctc gatccttggg tccggaacta gccagatcag cgcaacggtg atgtagaggg
     2461 cgtctgcgat ccagggatac acgaaggcca ccaggattcc cgacgcgtag agcagcagcg
     2521 acgccatgcc tttcctgtcc tgtccgaccg cgatcgccag ccgcgagtct cgtccttctt
     2581 ccttgattat cgcagtctga agaatcgtgt acgccagggc ggccatgatc agcaccgctc
     2641 cgtacaatac cgtcggcacc gaatctttgt agttcctgcc catccatgcg gtgacgaacg
     2701 gcacgagcga cagccagaac agcaagtgca gattggccca caggatcccg ccattgatgc
     2761 gatccgtcgc ctggagcatg tggtggtgat tgttccagta gatgccgagg tacacgaagc
     2821 tcagcacgta cgtaagcact gatggaatga tcggtctgag cgcggtccag tcggtgcctg
     2881 gtggcggatg caactcgagg atcatgatcg ttatcaggat cgcgacgact ccgtcgctga
     2941 acgcttccat tcggtgcttg tccacgaaag tgttcctcgt tcgatcgatc ggcgagagtt
     3001 gcaaaagagt cgtcgttccg cgaaaacggg ctcagagact cgtcattccc gcgaaagcgg
     3061 gaatccatct gttgccgatc aggttcgtgc tgccaccgca cttgaagatc gataacatgg
     3121 attcccgctt tcgcgggaat gacgacgggc tggttcccag ggcgcggata aatccgcgcc
     3181 ctacaacggg aacgacgaat tacccttcaa aatacggctg cgtcggtccg gtcgggctcc
     3241 gtggatcagg tttgacgacg aagctctggg tgtagctctt gccattcaca gtgagcttcg
     3301 cggtgaacgt tcccgatacc ggtgtgccgc ggcgacggaa gccgccacca cccgctgcac
     3361 cagcctctgg cttgatggga tcccagacaa cgcggtgcat tccggcggac gtcgcgaacg
     3421 gcgccggcgg ctcgcgccac agtgccgacg tattcggaat gccgccggcg ttgccacgcc
     3481 gcccgcccgc gggtgctccg cgttgcggct cgttcgagaa ggtgtgcaac acggcaccgg
     3541 tggaatcgag gatgtcgatc gtcacgggac cggtcgccgc ggtcttgagg tagtagtcga
     3601 tcgcagcacc gttcggtgga ttcggggcct gcggctcgtc cttctgcaac ggcgtgccgt
     3661 tgtccccgcc ctcgatcatg ttgatcgaat cgccgggctt gaacaggtag gcttcggcgt
     3721 ttccgatcgt gtcgttgatc tgacgcagcg ggctgatgtc atcgatcacc cagaagccgc
     3781 ggccgtgcgt cgctacgatg agatcgttct cgtagatctc gaagtcgcgc atcgacgtga
     3841 cgggcagatt caactggaac ggctgccagc tctcgccgtc atcaaacgat atgtgcacgc
     3901 caagctcggt accggcgaag agaagtccct gacgctttgg atcttccttg acgctgtgca
     3961 cgtagccatt ggcaggcagg ccggtcgtga tcttctgcca tgtcttgccc gcgtcacgcg
     4021 tgcgatagat gtacggctca aaatcctgga gctgatgtct gtcgacgctt gcgtacgcaa
     4081 cgttgaaatc gaagtgtgat gcttcgatca tcgtgacgcg actccacgac gtcattg
//
LOCUS       DATIMD010000250         3293 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2694017, whole genome shotgun sequence.
ACCESSION   DATIMD010000250 DATIMD010000000
VERSION     DATIMD010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3293
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2694017"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1052)
                     /gene="gatB"
                     /locus_tag="VLI40_05800"
     CDS             complement(<1..1052)
                     /gene="gatB"
                     /locus_tag="VLI40_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HSU96723.1"
                     /translation="MTDWSSKYEMVVGLEVHVQLKTRSKAFCGCSADFGAPPNVNTCP
                     VCLALPGALPVINAEAVRLAVRAAIALECTINLKSVFARKNYFYPDLPKGYQISQYDQ
                     PLAVRGTLHARIPGETAMHDIAITRLHMEEDAGKSVHDRYPRKTAIDLNRAGVPLIEI
                     VSEPDIRSASEAGAYLRTLKQILEYADVSDVSMEEGSLRVDANVSARVHGATELGTKT
                     EVKNVNSFSAVERSLQSEFERQCAMLDRGEVVRQETMIWDASRGTVRPARSKEESHDY
                     RYFPDPDLPPLILDPDYVTRLRRTLPELPQQLRERFRTEFALNDAELDAVTAESRLAA
                     YFEGVARAHGDARAAA"
     gene            complement(1049..2461)
                     /gene="gatA"
                     /locus_tag="VLI40_05805"
     CDS             complement(1049..2461)
                     /gene="gatA"
                     /locus_tag="VLI40_05805"
                     /inference="COORDINATES: protein motif:HMM:TIGR00132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HSU96724.1"
                     /translation="MRNIIDMTSEAAERAADSRFGPDGLNIVVATNRESAAANAERVA
                     LAYGRGDVMSLPGVAIAVKDNIATLDMPTTCGSRILAGYVSPYEATAITRLRANGAVV
                     VAKTNMDEFAMGSSTETSAYGPTRNPIDPERSPGGSSGGSAAAVAAGITDIALGSETG
                     GSVRQPAAFCGVVGVKPTYGRVSRFGLVAFGSSLDQIGVLARTVRDAAVATYAMSGSD
                     PNDSTSASVPVPTLPEPVEAYRGRTLEGVTIGIPKEYFPASLDSDVRARCDVAIEVLR
                     GLGAKIVDVSLPHTELAIPVYYIIAPAEASSNLARFDGVRYGRRASDVTDLREMYDST
                     RSRGFGAEVKRRIMIGTYVLSHGYYDAYYKKAQSVRDLITRDFNAAFGSGVDALFTPT
                     TPTPAFRIGAVTDPYEMYMSDIFTVTANLAGIPAMSLPIGRVRGLPVGGQIMAPHFDE
                     PRMFHVAAALEAALGAEAHA"
     gene            complement(2461..2784)
                     /gene="gatC"
                     /locus_tag="VLI40_05810"
     CDS             complement(2461..2784)
                     /gene="gatC"
                     /locus_tag="VLI40_05810"
                     /inference="COORDINATES: protein motif:HMM:TIGR00135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HSU96725.1"
                     /translation="MAVTEADIRKIADLARLSLADDEVPIMTAQLNSILAHMDVLTRV
                     DTGTATDLVAPLIELVGGAQTPGAPLRGDAVAPFPMDTTAPMLAPESEDGFILVPRLS
                     THEDM"
     gene            complement(2789..>3293)
                     /locus_tag="VLI40_05815"
     CDS             complement(2789..>3293)
                     /locus_tag="VLI40_05815"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSU96726.1"
                     /translation="GMEDGLFPTSQAFDDPAKMEEERRLFYVGITRAEEKLYLTHSES
                     RRRNGEIVGAIPSRFLRDIPDGMLEERGTIRAKTSGRHSWADSVRRKTHEVPQWRQAK
                     RDWEAESQDEPAYIRGERVRHAIFGTGTIAEIGGNGRDVKATITFDDEGVGQKTIKLA
                     YTKLERE"
BASE COUNT          581 a         1039 c         1016 g          657 t
ORIGIN      
        1 tttgcagcgg ccctggcgtc accgtgcgct cgcgctacac cctcgaagta cgcagcaaga
       61 cgggactccg ccgtcaccgc atccagctcc gcgtcgttga gtgcgaactc ggtcctgaac
      121 cgctcacgaa gttgttgcgg cagttccggt aaggtgcgac gaaggcgagt tacgtagtcg
      181 gggtccagaa tcagcggtgg aagatcgggg tccgggaagt agcggtagtc atgactctct
      241 tccttggacc tggcaggacg gacggtgcca cgcgacgcat cccagatcat cgtctcctgt
      301 cgcacgactt cgccgcgatc cagcatcgcg cactggcgct cgaactcgct ctgcagcgag
      361 cgctcgaccg ccgagaagga attgacattc ttgacttcag tcttggtacc cagctcggtt
      421 gctccgtgca ctcgtgcgct cacattggcg tcgacgcgca gactcccctc ctccatgctg
      481 acgtcgctca cgtcggcata ttcgaggatc tgcttgagcg tgcgcagata cgcgccagct
      541 tcggaggcgg agcggatgtc gggctcgctc acgatttcga tcagcggaac gccggcccga
      601 ttcagatcga tcgcggtctt gcgcggatag cggtcgtgca ccgacttgcc ggcgtcctct
      661 tccatgtgca gacgtgtgat cgcgatgtca tgcatcgcgg tctcgcccgg aattcttgcg
      721 tgcagcgttc cacgaactgc aagcggctga tcgtattgtg atatctgata gcctttcggc
      781 agatcagggt agaagtagtt cttccgtgca aacaccgact tcaggttgat cgtgcactcc
      841 agcgcaatcg ccgcacgcac cgcaagccgc acggcctcgg cgttgatcac cggcagcgct
      901 ccgggaagcg cgaggcaaac cggacaggtg ttgacgttcg gtggtgcgcc gaaatccgcc
      961 gagcagccgc agaacgcctt ggaccgcgtc ttgagctgca cgtggacctc gagccctacc
     1021 accatctcgt acttcgagct ccagtccgtc atgcgtgcgc ctccgctccg agggcggctt
     1081 cgagcgccgc agcgacgtgg aacatgcgcg gctcgtcgaa gtgaggcgcc atgatctggc
     1141 caccgacggg aaggccgcgt acacgaccga tcggcagtga catggcaggt ataccagcga
     1201 ggtttgcggt gaccgtgaag atgtcgctca tgtacatctc atacgggtcg gtcacggcgc
     1261 cgatcctgaa cgccggcgtt ggcgtggtcg gcgtgaacag agcatccacg ccggacccga
     1321 acgccgcatt gaagtcgcgc gtgatcaggt cgcgaacgct ctgcgccttc ttgtaatacg
     1381 catcgtagta tccatgcgac aatacgtagg tgccgatcat gattcgacgt tttacctcgg
     1441 cgccgaagcc gcggctgcga gtcgagtcgt acatctcacg cagatccgtg acgtcgctcg
     1501 cgcgccggcc gtaacggacg ccatcgaagc gagcgaggtt ggatgacgcc tcggcgggcg
     1561 cgatgatgta gtaaacggga attgccagtt cagtatgcgg tagcgaaacg tcgacgatct
     1621 ttgcgccgag tccacggagc acctcgatcg cgacgtcgca acgcgcgcga acatcggagt
     1681 cgagcgacgc cggaaagtat tccttcggaa tgcctatcgt gacgccttca agtgtgcgtc
     1741 ctcgatacgc ctcgactggc tccggtaggg tcggcacggg tacgctcgca ctcgtcgagt
     1801 cattcggatc actgccggac atggcgtacg tcgcgaccgc ggcgtctctt accgtgcgcg
     1861 ccaatacgcc gatctgatcc agtgaagacc cgaacgcaac cagaccgaag cgactgacgc
     1921 ggccatacgt tggcttcaca ccgacgacgc cgcagaatgc agccggttgt ctcacgcttc
     1981 cgccggtctc ggaaccgagc gcgatatcgg tgatgccggc ggcaaccgcc gcggccgatc
     2041 cgcccgatga tccgcctggg cttcgttccg gatcaatcgg attgcgcgtt ggtccgtagg
     2101 cactggtttc agtggacgag cccatggcga actcgtccat attggtcttg gcgactacca
     2161 ccgcgccgtt cgcccgaagc ctggtgatcg cggttgcctc gtaggggctt acgtatccgg
     2221 ccagaattcg cgatccacag gtcgttggca tgtcgagcgt cgcgatgttg tccttgaccg
     2281 cgatggcgac cccgggcagt gacatcacgt cgccacggcc gtacgccagt gcgacccgtt
     2341 ccgcgttggc ggcagccgac tcgcggttgg tggccacgac gatgttgagc ccatccgggc
     2401 cgaagcgcga gtcggctgct cgctccgccg cctcgctggt catgtcgatg atgttccgca
     2461 ctacatgtcc tcgtgcgtcg agagacgcgg gacgaggatg aaaccgtctt cggattccgg
     2521 tgccagcatc ggcgccgtgg tgtccatcgg aaatggcgcg acggcatcgc cgcggagtgg
     2581 tgcaccggga gtttgcgcac cgccgacgag ctcgatcaag ggggcgacaa ggtctgtggc
     2641 cgttccagta tcgactcgcg tgagcacatc catatgagca agaatactgt tgagctgcgc
     2701 ggtcatgatc ggaacttcgt catccgcgag cgatagtcgc gcgagatcgg cgatcttgcg
     2761 aatgtcggct tcggttacgg ccatggttct actctctctc gagcttggtg tatgccagct
     2821 tgatggtctt ctgccccact ccctcgtcat cgaacgtgat cgtcgccttc acatcgcggc
     2881 cgttgccgcc gatctcggcg atagtccccg taccgaaaat cgcgtggcga acacgctcgc
     2941 ctcgtatgta cgccggctca tcctgcgact cggcttccca gtcgcgtttc gcctggcgcc
     3001 actgcggtac ttcgtgagtc ttgcgccgca cggaatcggc ccatgaatgg cggccgctgg
     3061 tcttcgcgcg aatagtgcca cgctcttcca gcatcccatc gggaatgtcg cggagaaagc
     3121 gcgatggaat cgcgccaaca atctcgccgt tgcgccgccg actctcggag tgagtcagat
     3181 acagtttttc ttccgcgcgc gttatgccga cgtagaagag acgccgttcc tcctccatct
     3241 ttgctggatc gtcgaacgcc tgcgacgtgg gaaagaggcc gtcttccata ccg
//
LOCUS       DATIMD010000251        23387 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2404684, whole genome shotgun sequence.
ACCESSION   DATIMD010000251 DATIMD010000000
VERSION     DATIMD010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 23387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23387
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2404684"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..837)
                     /locus_tag="VLI40_05820"
     CDS             complement(4..837)
                     /locus_tag="VLI40_05820"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HSU96727.1"
                     /translation="MRIRVVFTGVVVGATALLLPRAAVSAQQNGTPVGRTARAYGAID
                     GSVRDTSGAWLSGVEVVAIDNSLIRTRSGAGGAFRIDSLPAGPHLIRFRRIGIMPTTV
                     SVVVEPDATISVDAVVEPFPITLSRVIVQAVSGELVHLPPGVADRMRTGIGTYLTAAQ
                     IESFHSRTTADIFRHVAGVAVEYYGHTPVVRSERGVQTIHGNACTTGMAVVVDGAVMN
                     TSLSAATRDSAPSNLAAAAGTLDAVSPRDIAAIEIYKDGAETPASLRDSECGVIYIWT
                     R"
     gene            complement(961..2202)
                     /locus_tag="VLI40_05825"
     CDS             complement(961..2202)
                     /locus_tag="VLI40_05825"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HSU96728.1"
                     /translation="MIRSRNTISAVAGAIMLGLTAGCADNGPTAVVPPNVPANALFTS
                     YVALGNSLTAGYQSGGIDDSTQQRSYAALLAQAMKTRYAYASLAGSGCPPPIVNFQTQ
                     ARLANGTAATCSLRNPNTAVALNNVAVPGATSLDPFSVSTSASNTLTTLFLGGKTQVA
                     KAADANPTFISAWIGNNDVLGAALSGILVPTAGVSAGVTSQSAFTTNYTAMVSGLKAI
                     PTVKGAILIGVLNVAGVPALFPVAALQNPAFKAGFDQFAGGTTTILPNCLSAPGNQAL
                     VSISILAQMRSGAHPLVIGCAKNSIPGTLVGDIFILDTSEQASLAATVAGYNATIQAA
                     ATANGWAYYDPNPLLVTLKTPGTGCINIVPDLANATAPFGACISLDGIHPTVVANRQI
                     TTALVTAINAKYGTAISAAGP"
     gene            complement(2217..3623)
                     /locus_tag="VLI40_05830"
     CDS             complement(2217..3623)
                     /locus_tag="VLI40_05830"
                     /inference="COORDINATES: protein motif:HMM:NF015316.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein transport protein"
                     /protein_id="HSU96729.1"
                     /translation="MRPSPSLARLAVCLLAAVTLPYPSAQAQGFGLNEVGTCAVSRGF
                     AATGTPCGDASTIFWNPAAAAELPGKSISIGASAIIVKGSFRQDSTGRTYPSDISPSL
                     PPAGFAAMRFGKGSVGLGVYVPYGLTSQWNDDFPGRFSALRASLQTIYFQPNIAYQLT
                     DNWSVGGGPVFGHSTVDLTQAIDLSQQQAAPGITFGQLGVAYETEFARTQVHGRANAV
                     GYNVGVHGRYGPWSVGARYLSALTFNYDNASAKFSQTATGLVLPQGNPVSPTGSPVPL
                     DVLLGAQFTTGGALVHQSASSTIKHPWQLQGGIGYTGFARTTLSVDVARLGWSAFNTL
                     PITFNGPAASSSRTLFEGYHDSWSYRFGAEHMIGSWTGRLGYSYAETPVPDETVTPLL
                     PDMNRRNFSAGVAIPVTSMYKVDIGYLHVNTPGRRGRIAESPASPPGLTLPLTIVANT
                     GAYTLKADVISAALNITF"
     gene            3857..4297
                     /gene="rplM"
                     /locus_tag="VLI40_05835"
     CDS             3857..4297
                     /gene="rplM"
                     /locus_tag="VLI40_05835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HSU96730.1"
                     /translation="MKTFSSTPTDIVHDWYIVDAEGMVLGRLATEVARVIRGKHKPTF
                     TPHMDGGDHVIVINASKVKVTGRKAEQKRYFRHTGYMGHERFTTFEDMLGKHPERVIE
                     HAVNGMLPKTALARTHMRTKLRVYPGANHPHKAQQPKPLTITTK"
     gene            4300..4695
                     /gene="rpsI"
                     /locus_tag="VLI40_05840"
     CDS             4300..4695
                     /gene="rpsI"
                     /locus_tag="VLI40_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HSU96731.1"
                     /translation="MPVDGTTHTIGRRKEAVCRVYIKAGSGKWLVNGRTLGDYFPRPA
                     HVSTIQQPFTATDMLGRYDVTANIDGGGLSGQAGALRLAIARALVKEDETLKPKLRSL
                     GFLTRDARVVERKKPGRPKARKRFQFSKR"
     gene            4924..5862
                     /gene="rpsB"
                     /locus_tag="VLI40_05845"
     CDS             4924..5862
                     /gene="rpsB"
                     /locus_tag="VLI40_05845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HSU96732.1"
                     /translation="MSQPNLEQLLEAGVHFGHQTRRWNPKMRRFIFAERNGIHIIDLQ
                     KTLRQLELAQKLVREVVARGDQVLFVCTKRQLVPIVKQEAERCGAMFVTERWLGGLLT
                     NFQTAKKQLRKLKDLDAGIEGGGDFANYTKKEQLMMTRQRDKLAKNLSGIKSMTRLPG
                     LMYVIDSKKERIAVAEANKLGIPIVALVDTNADPDLITVPVASNDDAIRAVELMTSAI
                     ADAIIDARREAPVRTEVEESESYTYSSDRGAEPEAGDERRRRRRPRRRRANQEAIAAR
                     LKGVPGAEGEGAQSDGGADNGDAGDAGDSGAEPAAE"
     gene            5952..6545
                     /gene="tsf"
                     /locus_tag="VLI40_05850"
     CDS             5952..6545
                     /gene="tsf"
                     /locus_tag="VLI40_05850"
                     /inference="COORDINATES: protein motif:HMM:NF013085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HSU96733.1"
                     /translation="MYTAKDVQTLRQRTGAGMMECKKALEEMGGDMEKAVDHLRKKGI
                     AKAEKRTGKQTSEGLISSYIHHNGKVGVMVEINCETDFVARTDDFKELGREIALHIAS
                     AAPVAVDKSGVSQELVDRERAIFEEQAKASGKPDAIIQKMVEGKVESYYKEVALVSQP
                     YVREPKKTVGDLIKEASAKLGENIQVRRFTRYQLGEE"
     gene            6552..7265
                     /gene="pyrH"
                     /locus_tag="VLI40_05855"
     CDS             6552..7265
                     /gene="pyrH"
                     /locus_tag="VLI40_05855"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005328724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HSU96734.1"
                     /translation="MSDPKLRRILLKLSGEALAGDKGFGFDFDVISGYANEIKNVVDS
                     GVGVGLVIGGGNIVRGAQISRMGMDRVAADYMGMLGTVVNALAMQDVLERIGVDTRVM
                     TAIRMEEIAEPYIRRRALRHFEKGRAVIFAAGTGNPYFSTDTAAALRAIQMRADVIIK
                     ATSVDGVYSADPKRDPNAVLYETISYNDVMQRELGVMDQTAVTLCKENSLPLIVLNIN
                     HPGAVMKAVRGEPVGTRVS"
     gene            7262..7816
                     /gene="frr"
                     /locus_tag="VLI40_05860"
     CDS             7262..7816
                     /gene="frr"
                     /locus_tag="VLI40_05860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HSU96735.1"
                     /translation="MTTIPQIVKDSRVAMDKAIENSKREFSSIRSGKASPNMLDSIRV
                     DVYGQQMQLNQVASVASPDPRSLLVTPYDKGQLKAIEKAIRESDLGLDPSTQGGIIRV
                     PLPSMNEQRRKELVKVVHKLAEDGRIGIRHARTDGREKLKKLDKVSEDEVKAAEKDLQ
                     KTHDEHMTQLESLLKAKEAEIMEV"
     gene            7825..8679
                     /locus_tag="VLI40_05865"
     CDS             7825..8679
                     /locus_tag="VLI40_05865"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: protein motif:HMM:NF013327.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HSU96736.1"
                     /translation="MSELSRRILFAVIAAPVGIALIYLGGPFLATLLSVIAALGAWEF
                     CRIARASGAQPFDAAAIVGAAAIPLLVFGVQLRLLAPTWTHAVVAGLVVFAATIFRRG
                     IGGRPLLAAATTVFCVAYLGLVAYVFELRYDDYIIDARGGTALAMFPILLTWATDIGA
                     YAFGRVFGSHKLMPSVSPGKTIEGSLGGLLLAVVVGLLYVSYVLHPLAQLALRPLTAV
                     LFAVCISVVAQVGDLAESLIKREAGIKDSSTLIPGHGGVLDRFDSLLFVLPVAALLLR
                     AMLIPAPV"
     gene            8676..9806
                     /gene="dxr"
                     /locus_tag="VLI40_05870"
     CDS             8676..9806
                     /gene="dxr"
                     /locus_tag="VLI40_05870"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HSU96737.1"
                     /translation="MSQRGIAILGSTGSIGTATLRVIARHTDRFRVIALTAFGNATLL
                     REQARSIHPQYVGIVAPSGDADRTWATGAECLIEAATRPDVDIVVNAIVGAAGLQATL
                     AALRAGKRVALANKESLVIGGELVLHACREGGGEIIPVDSEHSAIMQCIGARLESEVS
                     RLIITASGGPFREWDVARIAKATIQDALNHPTWTMGRKITVDSATLANKALEVIEAHY
                     LFGVPYDRIDVVVHPQSIIHSFVEFVDGSVLAQLGFPTMELPILYALTHPDRIADAPA
                     RRFDPAAASPLTFEPVDVGRFPSLALGIQAGCSGGAAPAVFNGANEQAVCLFLAGTIG
                     FADVPRAIESALAAHGGLPADSIDDVTAADAAARVHVGELFR"
     gene            9907..11112
                     /locus_tag="VLI40_05875"
     CDS             9907..11112
                     /locus_tag="VLI40_05875"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSU96738.1"
                     /translation="MALTDDCPLAEIIAVHLVEARDELTSRWLDRIAARVSVDPNRIF
                     PTTELLDHVPVLIDGIAAYVADPASIVSADMAVVDKARELGALRHAQGFDQYQILKEF
                     EILGGILLTFVGEVAGRLDVECSRGELMACAQRVFHAVCLIQQATSTQFLQLVTDRVA
                     EREERLRAFNRALTHEFRNRIGACLGAGQILQIPDLAADKRGELAAVIVRNVRGMQGI
                     LDNLLELTLVGADARQHRHVRLPGAAAEVGRELRQMASAQGITLRFGDNLPDVEVAAA
                     AIELCLTNLVSNAIKYSDPAEPEPWIEVRGALEMLRDGDTEVVVEVADNGLGVPESER
                     GRLFERFYRASHGEREIEGTGLGLSIVRETVKSLGGRVWARFPEKGSVFAFSLPCRRN
                     EDATTAGVE"
     gene            11271..12425
                     /gene="rseP"
                     /locus_tag="VLI40_05880"
     CDS             11271..12425
                     /gene="rseP"
                     /locus_tag="VLI40_05880"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HSU96739.1"
                     /translation="MLVWLAPVFVLGIVVFVHEFGHFLAAKAFGVYAPRFSIGFGPAI
                     AKKRIGETEYRIGILPIGGYVRMASRLDETSAALEGGGELVADADNLDPNEMIPFGSK
                     PVPEDRWFESKSLTARLIIMLAGVTMNVILGWAINVALVKTYEHAATSRLSLVVPDKP
                     AAIAGFQKGDSLITVNGAPISGWDDFVDIIKRSSGTPVSVGVLRGTSPLTLNVTPVSD
                     TATDPSTGTVSREGRIGVAAGQSDQTVGFGRAVVDGSNATLDMGTLVFTSLRRIATRQ
                     TSVTELGGPILIAQSSVQAARQGGSVLFYLIALLSVNLAVFNLLPVPILDGGQIVVQV
                     VEAARGQPLSDRARENVARVGLALILALFVMVTFNDIKRLVVGAVAGHAG"
     gene            12530..12790
                     /gene="rpsO"
                     /locus_tag="VLI40_05885"
     CDS             12530..12790
                     /gene="rpsO"
                     /locus_tag="VLI40_05885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HSU96740.1"
                     /translation="MAFDKTPTIEKYRASETDTGSSRVQVAVLTDRINYLNEHFKTHK
                     KDHHSRRGLLKMVGRRRRLLDYMKRTEVEGYRQLIAELGLRY"
     gene            12914..15133
                     /locus_tag="VLI40_05890"
     CDS             12914..15133
                     /locus_tag="VLI40_05890"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HSU96741.1"
                     /translation="MMKRIERQFAGRTLSIETGRMAKQAAGSALVQFGDTMVLVAVTV
                     SDKESTLPFFPLTVEYRDKAYAAGKIPGGFIKREGRPQDTEILSARIIDRSIRPLFPE
                     GFKNETQVFVSVISADQENDADVLALLATSFALNASKIPFAGPIAAVRVGRVQGKWVL
                     NPTFLQLQHSEMDIVVAGSQDSIVMVEGGAIEVGEEDVLGALTIAHKGIKELVAMQEE
                     LLADTRQPKMTWTKAEAPVELTAAVNKLAQGKIAEAINQADKHTRIEAVEAVKKAAVD
                     QLLADFPDNSKDIANLVGDLEYNALRSQVLDTKHRVDGRTTTEVRQITIDTHVLPRAH
                     GSALFTRGQTQALVSVTLGTANDVQRLDSIDESGETTKSFMLHYNFPPFSTGEVRPIR
                     GTSRREIGHGNLAERALHAVLPPFDEFPYTIRIVSDVLESNGSSSMATVCGGSLSLFD
                     AGVPIRSPVAGVAMGLIKEGKRYAILTDILGTEDHLGDMDFKVAGTEKGITSIQMDIK
                     IQGLDLKIMQEAMAQAKIGRLHILGEMNKALPAVRPELSPYAPRIVTVSINPEKIGEL
                     IGPKGKTIRGIQEETGAEISVDDSGMVTIAAVGGEAMERARQMVQAITAEPEIGATYE
                     GTVKSTTAFGAFVEIMPGTEGLVHISELKHGRTEKTEDVVKKGDRVRVKVLDRDERGR
                     LRLSMKALETPPEGSAASERAPRPESSAPVEGDGQQEGGERSERPRRPRSSGRGRRD"
     gene            15084..16388
                     /locus_tag="VLI40_05895"
     CDS             15084..16388
                     /locus_tag="VLI40_05895"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSU96742.1"
                     /translation="MSVLGGRAAVGVGAGISGTGADVQRTVLPNGLTVLSDNVPGVRS
                     VAFGAWVRAATLHERAEKMGISHMLEHMVFKGTERRSSKDISLALETLGGSLDAYTAR
                     EHTSYQARVLDEHIRDAADVIGDLVFHPVLRAADLNLERKVVIEEIAMVDDTPDDLVF
                     EVHNEKLFGDNGYGYRILGTRDTVSSFTTSDLRELHAAAYRPGNIVVAAAGSIDHDEL
                     VNILGETGWLDAPAGSIDFAAPAPVFQAPSYTHVERPGAQTQLVFGSEAPAHGDERRY
                     AFCLISMLLGGGMSSRLFQHVREELGLAYAVHTFSSFYSRAGMHGVYVGTSPESADDA
                     AGAVIAELARIAIDGIPADELAAGKQQLKGQITLSLETPSARMYRAAGLELYGEPFRS
                     LDEMLSLVDAIDEQTVSEVCSACFQPSGQTVVSLGPAPLTIL"
     gene            16396..17511
                     /gene="ald"
                     /locus_tag="VLI40_05900"
     CDS             16396..17511
                     /gene="ald"
                     /locus_tag="VLI40_05900"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000286 - alanine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HSU96743.1"
                     /translation="MKIGVPKEIKTNENRIALVPAGAEALVAAGHSVMIEKGGGEGSG
                     FSDDMYTSVGATIGADADTVWREADMIMKVKEPIAVEWPRMKKGQVIFTYFHFAADEK
                     LTKAHMDSGAICIAYETVELANHELPLLTPMSEVAGRMAVQEGAKYLEKLYGGRGVLL
                     GGVPGVAPAKVVIIGGGVVGVNAAKMAAGLGAKVAVLDVSLERLRYLSDVMPANVTLI
                     YSNRHNLLEQIRTADLVVGGVLIPGAKAPKLVRREDLKTMQQGSVIADVAIDQGGCFE
                     TSHPTTHENPTYVVDGVIHYAVANMPGGVPRTSTLALTNATFPYALLLANKGWKQALR
                     DNAALRKGLNIVEGKVTYPGVAEAFGMPLSDPDTFIK"
     gene            17548..18585
                     /locus_tag="VLI40_05905"
     CDS             17548..18585
                     /locus_tag="VLI40_05905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HSU96744.1"
                     /translation="MRWPFFKGGSFFPATGIAVDLGTANTLVYVKGEGIVLNEPSVVA
                     LDRETRKVKGVGLEAKRMLGRTPENVIAVRPMKDGVIADFDVTEKMLRYFLALIIENH
                     VFRVKPRVIVCVPSGITEVEKRAVRDSALGAGAKEVMMVAEPMAAAIGVGLPVDTPTG
                     NMVIDIGGGTTEIAVIALSGIVSDTSIRTGGDELDQAILQFMRKNHSLLIGEATAEQV
                     KIQIGSAHPVGDEREMDVKGRDLVSGIPKTVRVHSSEIREAVQEPIQQIVDAVRRALE
                     ITPPELAADIVDRGIVMTGGGALIRGLDVLLAQETGLSIHVDEDPLTCVVRGTGRILD
                     DEEKYWSVLSP"
     gene            18594..19721
                     /gene="mreC"
                     /locus_tag="VLI40_05910"
     CDS             18594..19721
                     /gene="mreC"
                     /locus_tag="VLI40_05910"
                     /inference="COORDINATES: protein motif:HMM:NF016011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005618 - cell wall [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HSU96745.1"
                     /translation="MARIGRSNNRIDRTVLLVCAVLSLIALVLPTQVREPIASGLRRS
                     ILAPLLRLQQSAEESRRALTMHDAVVSQRDSIALREMGVESLETENVRLREILGLGSR
                     LKWGFVPAEALHGRGVRDEFGVTLSAGSRAGVLKLSPVVAPEGLVGVVDNVDPMISHA
                     MVWTHPDFRVSAMAEDASAFGIVQAHLESGAGRYLMEMRGVPFRTSIKPGTMVVSSGL
                     GGVYPRGIPIGRVIGETKTAETWARTYLIRPAVFPADVYAVMILRPDRATAGVDNVWA
                     VGTIADSSVRKVVAAGDSLARTAALAEASARQAVQDSITRDSLRRAGVPEQSIVPPAD
                     SLARAKRPIIRRDSVRVDTTRRDTLRRAPVRRDTVPGPHTP"
     gene            19732..20220
                     /gene="mreD"
                     /locus_tag="VLI40_05915"
     CDS             19732..20220
                     /gene="mreD"
                     /locus_tag="VLI40_05915"
                     /inference="COORDINATES: protein motif:HMM:TIGR03426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HSU96746.1"
                     /translation="MTIAGTIRAVITFAVLVLLHFTLRPLLGWRAPIDFLLLAVLTAS
                     VRVRPAGAVVIGFVVGIVADSLSPDTLGAGALAMIFVAYLASWLKAVFFADSLPLNAM
                     FFFAGKWLFDIVYFIAEHRLSGIDLVQQLVLWSPLSAAATALAGVVFLLVTRPFLEPA
                     PG"
     gene            20217..21995
                     /gene="mrdA"
                     /locus_tag="VLI40_05920"
     CDS             20217..21995
                     /gene="mrdA"
                     /locus_tag="VLI40_05920"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR03423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HSU96747.1"
                     /translation="MSIHPNDVARRSRVAKAGLGVVILSLMGAFFNAQVLQHDRYKLQ
                     SQENRLRALPLAAPRGIIYDRFGNIIAENLPGYAVSIAPVNADSLKSALQHLSSVISL
                     TPDQMDAALRRYRRDPNRPTLIMSDASMSVVSVLEEHRINFPRLIIQSVPKRFYPDGP
                     AVASFVGYTGEITDADLNSPAYDGYKPGQLVGKGGIEKEYEKILRGREGVRYDEVDAR
                     GRQVRQATPRLDLNPEPGPPLRTNIDLDLQRYVASVFGDSLVGGAIALDPRDGGVLAL
                     YSAPSYDVNKFTGGIPADYWKELLSDERRPLVNKVTQGRYPPGSTFKLATAVTGLEDG
                     LVTLDEQMPVPCTGGFQYGNRYFKCWDKKGHGSISLARAIEVSCDVYFYQLGLKIGLS
                     RMIAGGISLGMRDKTGIDLPDEKRALWPYAVDYYNKTYGARGWSNAVTLNLSIGQGEN
                     SQTVVNMAKFYTALATDGNAATPEIVKRAPVRTRVFKLDQQQMDGLRTALAGVIGQGT
                     AQSARIQGIMLAGKTGTAQTGKRVNGVELNHAWFVGFAPADKPTIVVAVMLEYGGHGG
                     RAAHVASSIIAHYLKVAPVTAVQSEG"
     gene            21995..23242
                     /gene="rodA"
                     /locus_tag="VLI40_05925"
     CDS             21995..23242
                     /gene="rodA"
                     /locus_tag="VLI40_05925"
                     /inference="COORDINATES: protein motif:HMM:TIGR02210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HSU96748.1"
                     /translation="MFRNTLTDYPLAATAIALSLFGVAIVYSAGQTDIPTYVAPLWKS
                     QLMWLVLGVLCAWGIGNSSVRLIEWVTWPAYLLTLLTLASLLVLGTGTGANGHMRSWL
                     AIGGHRLGQPAELAKIIVVLMLAKVLAERREAPKSLLELWKPGLVVGVPFAMIMLQPD
                     LGSAIVFVGIFFGMLFWSGVPWPLLVLLASPVVSLVLSFSTGLWGAWFLVLIALVLWY
                     KPYLLEGIVLVVANVATGVIAPILWEKLAPYQQNRLKVFLDPSADPRASGYHVLQSKI
                     AIGSGGLFGNGFTLGTQKRSGFLPEQHTDFIFAVVGEELGFIGVALALALFLALLLRA
                     TRIASRANDSFGSLAAFGLMSCWLVHVVVNIGMTLNLMPITGIPLPFFSYGGSFMLAS
                     WLGVGVLLRISGEGRGHAGALLS"
BASE COUNT         4470 a         7022 c         7495 g         4400 t
ORIGIN      
        1 ctgctacctc gtccagatat agatcacacc gcattcagag tcgcgcagac tggcgggtgt
       61 ttctgcaccg tccttgtaaa tctcgatcgc ggcaatgtca cgtggcgaga ccgcgtcgag
      121 cgtaccggcc gcggcagcga gatttgacgg tgcactgtcg cgggtggcgg cgctgaggct
      181 ggtgttcatt actgcgccgt cgaccactac cgccattcct gtcgtgcatg cattcccgtg
      241 gatggtctgc acaccgcgtt cactgcggac caccggcgtg tgaccataat actccaccgc
      301 gacgccggcg acgtggcgga aaatatcggc tgtcgtacgc gaatggaaac tctcgatctg
      361 tgccgcggtc agataagttc caattccggt gcgcatccgg tctgcaacac ccggcggtaa
      421 atgcaccagc tccccgctca cggcctgcac tattactcgc gacagtgtta tcggaaacgg
      481 ttcgacgaca gcgtctaccg agatggtggc atcgggctcg acaaccaccg agacggtggt
      541 cggcatgatt ccgattctgc gaaaccggat caggtgcgga ccggccggga ggctatcgat
      601 gcggaaggcg ccgccagctc cgctgcgagt tcgaatcagc gagttgtcta tcgcaacgac
      661 ctccactccg ctcagccacg ctccgctcgt gtcgcgcacg ctcccgtcga tcgcgccgta
      721 cgctctagct gtgcgaccga cgggcgtccc attctgctgc gcggagacgg cggcgcgcgg
      781 cagcaggagg gctgtggcgc caacgactac gccggtaaaa acaacgcgta tccgcataac
      841 gggttaactc cgtcgagagt atcgcgggtc gcgcccctcg cggctcgtga cggtaatata
      901 cgctcacaaa tacatgctgg ccgcacgaac cgtcgggtga gattcatacg tacaattctg
      961 ctacggaccg gcagctgata tggcggtgcc gtacttcgcg tttattgccg tcacaagagc
     1021 cgtcgttatc tgacggtttg caacgaccgt cggatggatt ccatccagcg atatgcacgc
     1081 cccgaacggg gcagtcgcat tcgccagatc cgggacgatg ttgatacaac cggttccggg
     1141 tgtcttgagc gttacgagca acggattggg gtcgtaatat gcccacccgt tcgccgtcgc
     1201 cgcggcctgg atcgtggcgt tgtaaccggc gaccgtcgcc gcgagactcg cctgctcgga
     1261 ggtgtcaaga atgaagatgt cgccgacgag cgttccggga atggagttct tcgcgcagcc
     1321 gatgaccagc ggatgcgcgc ccgagcgcat ctgcgcaagt atcgaaatcg agacgagtgc
     1381 ctggtttccg ggcgcgctga gacagtttgg aaggattgtc gtcgtgccgc cagcaaactg
     1441 atcgaatccg gccttgaacg caggattctg cagcgccgcg acggggaaga gcgcgggaac
     1501 tccggccacg ttaagcacgc caatcagaat tgcacccttc acggtgggaa tggccttgag
     1561 gccgctcacc atcgccgtgt agttcgtcgt gaatgcagac tgcgacgtaa cgccagccga
     1621 gactccggcc gttggcacga gtatgcccga gagcgccgcg cccaacacat cattgtttcc
     1681 gatccacgcg gagatgaagg tcgggttcgc atcggcggcc ttcgccacct gggtctttcc
     1741 accgagaaac aacgtcgtca gcgtgttcga tgctgatgtg ctgacgctga acggatcgag
     1801 cgacgtcgcg ccgggaacgg cgacgttgtt gagcgcaacg gcggtgttcg gattgcgcag
     1861 cgagcaagtc gctgcggtgc cattggcgag tctcgcctga gtctggaaat tgacgatcgg
     1921 cggcggacat ccggagccgg cgagcgacgc gtaggcgtat cgcgtcttca tggcctgtgc
     1981 gagcaacgcc gcgtaactgc gctgctgcgt gctgtcatcg atgccgcccg actgataacc
     2041 agcagtaaga ctgtttccga gcgcgacgta actggtgaat aacgcatttg ccggcacgtt
     2101 gggcggaacg accgccgtcg ggccgttgtc tgcgcaccct gcggtgagcc cgagcattat
     2161 ggcgcccgca accgcgctga tcgtattcct tgagcgaatc attggagtct gcgcggttag
     2221 aaggtgatgt tgagcgcggc ggatatcaca tccgccttga gtgtgtatgc accggtgttt
     2281 gcgacgatcg taagcggcag cgtcaagcca ggcggtgacg cagggctctc agcgattcgc
     2341 ccgcgccgtc ccggcgtgtt cacgtgcaga tagccgatgt cgaccttgta catgctcgta
     2401 acgggaattg cgacgccggc ggagaagttg cggcggttca tatccggcaa cagaggtgtg
     2461 actgtctcgt ccggcactgg cgtctccgca tagctgtagc ccagacgtcc ggtccacgac
     2521 ccgatcatgt gctccgcgcc gaagcgatag ctccacgaat cgtggtagcc ttcgaacagc
     2581 gttcgactgc tcgacgcagc cggtccgttg aatgttatcg gcagagtgtt gaacgccgac
     2641 catccgagcc gcgcgacgtc gaccgacagt gtggtgcgcg cgaatccggt gtagccgata
     2701 ccgccctgca actgccacgg gtgcttgatc gtcgacgacg cgctctggtg gaccagagcg
     2761 ccgcccgtgg tgaactgcgc gccgagcagc acgtcgagcg ggaccggcga gcccgtggga
     2821 ctcaccggat ttccctgggg cagaacgagt ccggtcgcgg tctgggagaa tttcgccgac
     2881 gcgttatcgt agttgaaggt cagcgcggag aggtaccgtg cgccgacgga ccagggtccg
     2941 tacctgccat gcacgccgac gttgtagccc accgcatttg cgcgtccatg aacctgtgtg
     3001 cgcgcgaatt cggtctcgta tgcgacgcca agttgcccga aggtgatgcc gggcgcggcc
     3061 tgctgttgtg acaggtcgat ggcctgggtg aggtcgaccg tggaatgtcc gaatacgggg
     3121 ccgccgccga cggaccagtt atccgtcagc tgatatgcga tattgggctg aaagtatatg
     3181 gtctggagcg aagcccggag cgcggaaaac cgcccaggga agtcgtcgtt ccactgtgac
     3241 gtaaggccgt atggtacgta gaccccgagt ccgacggatc ccttcccgaa tcgcatcgcg
     3301 gcgaagccgg ccggtggaag agacggcgag atgtcgctcg ggtaggtccg gcccgtgctg
     3361 tcctggcgga acgagccctt cacgatgatc gcactggcac cgatgctgat cgatttccca
     3421 gggagctcag cggcggcagc ggggttccag aagatcgtcg aagcgtcccc gcagggagtg
     3481 cctgtcgccg cgaatccgcg ggaaaccgcg caggtcccaa cctcattgag gccaaagccc
     3541 tgggcctgcg ctgacgggta cggtagtgtc acggcggcca gcagacagac tgccagccga
     3601 gccaacgatg gggaaggtct cattcgttgt accgattagg tcgtcgtccg ggcacccgga
     3661 ccggtcggtc gggggatagc tgttcccggg gcgccaacac tttacattcg gtgcgtgcgg
     3721 cgcgccagca aaatattggt gaatatggcg ccagcagtcc ggctgcgtgg aggccgccga
     3781 gcgtgccgat tgactaaagc caacggggct ggtaacttag aaggctgtcg catttcgtaa
     3841 tcgattacct cccaaaatga agactttctc ctccaccccg actgatatag tccacgattg
     3901 gtacatcgtg gatgcggaag gcatggtgct cggacggctc gccacagaag tggcccgcgt
     3961 catccgtggc aagcacaagc ctacgtttac cccccatatg gacgggggcg accacgtcat
     4021 cgtgatcaac gcctcgaagg taaaggtcac gggtcgcaag gcggagcaga agcgttactt
     4081 ccgccacacc ggctacatgg gccacgagcg tttcacgacg ttcgaggaca tgcttggcaa
     4141 gcaccctgag cgcgtcatcg aacacgcggt caacggaatg ctccccaaga cggccctcgc
     4201 acgcacgcac atgcgcacca agctgcgcgt ttacccgggt gccaatcacc cgcacaaggc
     4261 tcagcagccc aagccgctca ccatcaccac caagtaagca tgcctgtcga cggaacaacg
     4321 cacacgatcg gtcgccgcaa ggaagcggtc tgccgcgtct acatcaaggc tggctcgggc
     4381 aagtggctcg tgaacggccg cacgctcggc gattacttcc cacgccctgc gcacgtctcg
     4441 accatccagc agccgttcac ggcgaccgac atgctcggcc gctatgacgt aaccgccaac
     4501 atcgacggcg gcggactgtc gggtcaggca ggcgcactgc gcctcgcgat cgctcgcgcg
     4561 ctggtaaagg aagatgagac gctcaagcca aagctgcgca gcctcggatt cctcactcgc
     4621 gacgcacgcg tcgtcgagcg caagaagcca ggccgtccga aggcacgtaa gcgattccag
     4681 ttctcgaaac gttaaacccg taggggccgg cctccgtgcc gaccccggcg gtgcagcatg
     4741 gtgcagtgct gcgggccaga gcagtgcagc aaggcagtgc agcaaggcag tgcagtacgg
     4801 gcgacgcatg cgtcgcccca acaaaaccaa catcctcccc gagctttgac gggtgccggc
     4861 ttcggccggt cgtccgagcg ctgacgggag gagacgacac caaccaacca aggatttaga
     4921 agaatgtccc agccaaacct cgagcagctg ctcgaagccg gcgttcactt cggccaccag
     4981 acgcgccgtt ggaacccgaa gatgcgcaga ttcattttcg ccgagcgcaa cggcatccat
     5041 atcatcgatc tccagaagac cctgcgccag ctcgagctgg ctcagaagct cgtgcgcgaa
     5101 gtcgtcgcgc gcggcgatca ggtcctcttt gtctgcacca agcgccagct cgttccgatc
     5161 gtcaagcagg aagccgagcg ttgcggcgcc atgttcgtga ccgagcgctg gctcggtggt
     5221 ctgctcacca acttccagac cgccaagaag cagctccgga agctcaagga tctcgacgct
     5281 ggaatcgagg gcggcggtga cttcgcgaac tacacgaaga aagagcagct catgatgacg
     5341 cgccagcgcg acaagctcgc caagaacctt tccggcatca agtcgatgac gcgtcttccg
     5401 ggcctgatgt acgtgatcga ttccaagaag gagcgcatcg cggttgccga agccaacaag
     5461 cttggcatcc cgatcgtcgc gctcgtcgac acgaacgctg atccggatct catcacggtt
     5521 ccggtcgcga gcaacgacga cgcgattcgc gcggtcgagc tcatgacctc ggcgatcgcc
     5581 gatgcgatca tcgacgcgcg tcgcgaggcg ccggtccgca ctgaagtcga ggagtccgag
     5641 tcgtacacgt acagctctga ccgcggcgcc gagcccgaag cgggcgatga gcgtcgccgc
     5701 cgtcgccggc cgcgtcgtcg tcgtgccaac caggaagcga tcgcagcgcg cctcaagggc
     5761 gtgccgggcg ctgaaggcga gggcgcccag tcggatggcg gtgccgataa cggcgatgcc
     5821 ggagatgcag gcgacagtgg cgcggagccg gccgcggagt aacagcgacc gaccaatctt
     5881 gaacgccgcc gcggatcacc tcggcggcgt tcgtttgaca gacaccgaca ataaccaact
     5941 gaaggtcaac gatgtataca gcaaaagacg tacagaccct ccggcagcgc accggcgcgg
     6001 gcatgatgga gtgcaagaag gcgctcgaag agatgggcgg cgacatggaa aaggccgtcg
     6061 accatctccg caagaaggga atcgccaagg ctgagaagcg caccggcaag cagaccagcg
     6121 agggactcat ctccagctac attcaccaca acggcaaggt cggcgtgatg gtggagatca
     6181 actgcgagac agacttcgtc gcccggacgg acgacttcaa ggagctcggt cgggaaatcg
     6241 cgcttcacat cgccagcgcc gccccagtgg ccgtcgacaa gagcggcgta tcgcaggagc
     6301 tggtcgaccg tgaacgcgct atcttcgagg agcaggcgaa ggcgagcggc aagccggacg
     6361 caatcattca gaagatggtc gagggcaagg tcgagtcgta ctacaaggaa gttgcgctcg
     6421 tgtcacagcc ttacgtgcgc gagccaaaga agaccgtcgg cgacctgatc aaggaagcgt
     6481 cggccaagct cggcgaaaac attcaggttc gtcgcttcac gcgatatcaa ctgggcgagg
     6541 agtaaagccg attgtccgat cccaagctgc gccgcattct actcaagctc tccggtgaag
     6601 cgctcgccgg cgacaagggc tttggttttg attttgatgt gatctcgggc tatgccaatg
     6661 agatcaagaa tgtggtcgac tcgggggtcg gcgtcgggct cgtcatcggc ggcggaaaca
     6721 tcgttcgcgg tgcgcagatc tcgcgcatgg gcatggaccg tgtcgccgcc gattacatgg
     6781 gaatgctcgg cacagtcgtc aacgcgctcg cgatgcagga cgtgctggag cgcatcggcg
     6841 tggatacgcg cgtgatgacg gcgatcagaa tggaggagat cgctgagccg tacatccgcc
     6901 gccgcgcgct gcgtcacttc gagaaggggc gcgcggtgat attcgccgca ggcaccggca
     6961 atccttattt ttcgaccgac acggcggccg cgctccgcgc catccagatg cgtgccgacg
     7021 tcatcatcaa ggcgacgagt gtggatggcg tttactcggc tgatcccaag cgcgatccga
     7081 atgcagtgtt gtacgagacc atctcgtaca acgatgtgat gcagcgcgag ctgggcgtga
     7141 tggatcagac agccgttacg ttgtgcaagg aaaacagcct gccgctcatc gttctgaaca
     7201 tcaaccatcc cggagcggtc atgaaggccg ttcgcggaga accagtgggg acgcgcgtat
     7261 catgacgacg attccgcaga ttgtgaaaga ttcacgtgtc gcgatggaca aggcgatcga
     7321 gaactccaag cgcgagttca gctcgatccg gtccggcaag gcgtcgccca acatgctcga
     7381 cagcatccgg gtcgatgtct acggccagca gatgcagctc aatcaggtgg cgagtgtcgc
     7441 gtctccggat ccgagatcgc tcctcgtcac tccgtacgac aagggtcagc tcaaggcgat
     7501 cgagaaggcg atccgtgagt ccgatctcgg cctggatcca agcacgcagg gcgggatcat
     7561 ccgtgttccg cttccgtcga tgaacgagca gcgtcgcaag gagctcgtga aggtggtgca
     7621 caagctcgcg gaagatggtc gcatcggcat ccgccacgcg cgcaccgacg gccgcgagaa
     7681 gctcaagaag ctcgacaagg tctccgagga cgaagtgaag gcagcggaga aggatcttca
     7741 gaagacccat gacgagcaca tgacacagct ggaatcgctg ctcaaggcga aagaagcgga
     7801 aatcatggaa gtctgacgca ggtcgtgtcg gaactttcca gacgcattct cttcgcggta
     7861 atcgccgcgc ccgtcgggat agcactgatc tatctcggcg gaccattcct cgccactctg
     7921 ctgtccgtca ttgcagcgct cggcgcatgg gaattctgcc gcatcgcgcg cgcgtccggt
     7981 gcgcagccat tcgatgccgc cgcgattgtc ggcgcggctg cgatcccatt gctcgttttc
     8041 ggagttcaac tccgtcttct cgcaccgacg tggacgcacg ctgtcgttgc ggggctggtg
     8101 gtcttcgcgg ctacgatctt ccggcgggga atcggtggac gcccgctgct cgccgccgcg
     8161 acgactgtgt tctgcgtcgc gtatctcggg ctcgtagcgt atgtgttcga gctgcgatac
     8221 gacgattata tcatcgacgc gcgcggcgga actgcactcg cgatgtttcc gattctgctc
     8281 acatgggcga ccgatatcgg tgcatacgcg ttcggccggg tgttcgggtc gcacaagctg
     8341 atgccctcgg tcagcccagg gaagaccatc gaagggtcac tcggcgggct gcttctcgca
     8401 gtcgttgtgg ggttgctgta cgtgagctac gtgttgcacc cattagcgca gctggcactg
     8461 cggccgctca cggccgtttt gtttgcagtg tgcataagtg tggtcgcgca ggtcggcgat
     8521 cttgcggaat cgctcataaa gcgtgaagcg ggaatcaagg acagctcgac actgattccc
     8581 ggacatggcg gcgtgctgga tcgtttcgac agcctgctgt tcgtgcttcc ggtcgcggcg
     8641 ctgctcctgc gcgcgatgct cattccggcc ccagtgtgag tcagcgcggg atcgcgatac
     8701 tcggctcgac cggatcgatc ggcacggcca cgctccgagt gattgcacgg cacaccgatc
     8761 gatttcgcgt cattgcgctt acggcgttcg gcaacgccac gctcctgcgc gaacaggcgc
     8821 ggtcgatcca tccgcagtat gtcggcatcg tcgcacccag cggcgacgcg gatcgtacgt
     8881 gggcaacagg cgctgagtgt ctgatcgaag cagcgacgcg cccggatgtg gacattgtag
     8941 tcaatgcgat cgtgggcgca gctggattgc aggcgacgct cgcagcgctg cgtgccggca
     9001 agcgagttgc gctcgccaat aaggaatcgc tcgtaatcgg tggcgagctc gtgcttcacg
     9061 cgtgccggga gggcggcggc gagatcattc ccgtggatag cgagcacagc gcgatcatgc
     9121 agtgcatagg tgcgcggctg gagagtgagg tcagccggct tatcatcact gcgtcaggtg
     9181 gcccgttccg cgaatgggac gtcgcgcgga tcgcgaaagc aaccatccag gatgcattga
     9241 atcatccgac atggaccatg gggcgcaaga ttacggtcga cagcgctacg cttgcgaaca
     9301 aggcgctgga agtgatcgaa gcgcattatc tgttcggcgt tccatacgac cgtatcgacg
     9361 tggtggttca tccgcagagt atcatccatt cattcgtcga atttgtggat gggagcgtgc
     9421 tcgcgcagct cggctttccg acgatggagc tgccaattct gtacgcgctg acgcaccccg
     9481 atcgcattgc ggacgcgccg gcgcggcggt tcgatccagc cgctgcgtcg cccctcacat
     9541 tcgagccggt cgatgtcgga cggtttccat cgctcgcgct aggtatccag gcgggatgca
     9601 gcgggggagc ggcaccggcc gtgttcaacg gcgccaatga gcaggcggtg tgcctcttcc
     9661 tggccggcac gatcggattc gccgatgtac cgcgggcgat cgaatccgca cttgccgccc
     9721 atggtggtct gcctgccgac tctatcgacg atgttacggc cgccgacgcg gcggcacggg
     9781 tgcatgttgg cgagcttttc cgctagcact ggcgcccggc atcctgattc tgatgtattt
     9841 ttgttgtcgg acgagtactc tgcgcggtga gcttccgcgg cctgcaaaca ctgtgagcgt
     9901 tgacacttgg ccctgactga cgactgcccg ctcgcagaga taatcgctgt gcatctcgtg
     9961 gaggcgcgcg acgaattgac gtcgcgctgg ctcgatcgca tcgccgcgcg cgtgtcggtc
    10021 gacccgaatc ggatatttcc gaccaccgag ctgctggatc acgtgccagt tctgatcgac
    10081 gggatcgcag cctacgtcgc tgaccccgcg tcgatcgtat cggccgacat ggcagttgtc
    10141 gataaggcgc gcgaactcgg tgcccttcgg cacgctcaag gtttcgatca gtatcagatt
    10201 ctcaaggagt tcgagatcct tggcggaatc ctgctcacgt tcgtcggtga ggtggcgggc
    10261 cgcctggacg ttgaatgcag ccgcggtgag ctgatggcgt gcgcacagcg cgtcttccac
    10321 gccgtgtgtc tgatccagca agccacgtcc acgcaattcc tccagttggt gacagatcgc
    10381 gtggcggagc gtgaagagcg gcttcgtgcg ttcaaccgtg cgctcacgca cgaattccgg
    10441 aaccgcattg gcgcatgtct tggtgccggg cagattctac agatacccga tcttgccgcc
    10501 gacaagcgcg gagagctcgc ggccgtgatc gtccgcaacg tccgcggaat gcagggaatc
    10561 ctcgataatc tgctcgaact caccctcgtc ggcgcggatg cgcgacagca ccggcacgtg
    10621 cggctaccgg gcgctgcagc cgaggttggg agggagttgc gtcagatggc gtcggcgcag
    10681 ggaataacgc tccgattcgg ggacaatctt ccggacgtcg aggtcgccgc cgcggcaatc
    10741 gagctgtgtc tcacgaacct cgtgtcgaac gccatcaagt acagcgatcc cgcagagcct
    10801 gagccgtgga tcgaggtgcg cggtgcgctg gaaatgttgc gcgatggtga cacggaagtt
    10861 gtcgtcgagg ttgccgacaa cggacttggc gtgccggaat cggagcgggg ccggctgttc
    10921 gagcggttct atcgtgcgag ccatggagag cgcgagatcg aaggcaccgg cctcgggctc
    10981 agcatcgtac gcgagacggt gaagtcgctt gggggacgcg tctgggcgcg cttccccgaa
    11041 aagggatcag tattcgcctt ctcgctccct tgccggcgca acgaggatgc tacgacagct
    11101 ggcgtcgaat gagtcgccgg ttccctcacg tgcagcacga ctgatcgagg gattgcagcg
    11161 gcgcgtgtcg gtgccccggt ggaccttgcc gtagcgctaa attacagcca gacgaatccc
    11221 gtaaatacgg taggcccgcg gggccgcccg aatccatttc atccctggtc atgctagtct
    11281 ggctcgcacc tgtatttgtc ctcggaatcg tggtttttgt acacgagttc ggccattttc
    11341 tcgccgcaaa ggcgttcggc gtgtatgcgc cgcggttctc gatcgggttc ggtcctgcga
    11401 tcgcgaagaa gcgcatcggc gagaccgagt atcgcatcgg gattctcccg atcggcggtt
    11461 acgtgcggat ggcctcgcgg ctggatgaga ccagtgcggc gctggagggc ggcggcgagc
    11521 tggtcgctga cgccgataac ctggatccca acgagatgat cccgttcggc tccaagccgg
    11581 tgccggagga tcgctggttc gagtccaagt cgctcacggc gagactgatc ataatgctcg
    11641 ccggcgtgac gatgaacgtg attctgggct gggcgataaa tgtcgcgctc gtaaagactt
    11701 acgagcacgc cgcgacaagc cgcttgagcc tggttgtgcc ggataagccg gccgcgatag
    11761 ccggttttca gaagggcgac agtctgatta ccgtcaacgg cgcaccgatc agcggatggg
    11821 atgatttcgt cgatatcatc aagcgatcga gcggtacgcc ggtatcggtg ggggtactgc
    11881 gcggaacgag tcctctcacc ctgaacgtga ctcctgtatc ggacaccgcc acggatccga
    11941 gcaccggaac ggtgagccgc gaggggcgca tcggagttgc cgcgggccag agtgaccaga
    12001 cagtcgggtt tgggcgtgcg gtcgtagatg gcagcaacgc cacgctggac atgggaactc
    12061 tcgtgttcac ctcactgcgc cggatcgcga cgcgtcagac gtcagtgacg gagctgggtg
    12121 ggccgatcct gattgcgcag tcgtcggttc aggcggcacg gcagggcggg tccgtcctct
    12181 tctacctgat tgcgctgctg agcgtcaatc ttgcggtgtt caacctgctg ccggtcccga
    12241 tactcgacgg cggccagata gtggttcagg tcgtcgaggc ggcccgcggg cagccattga
    12301 gcgacagggc acgcgagaac gtcgcgcggg tggggctggc cttgatcctg gcgctgttcg
    12361 tgatggtcac gttcaacgac atcaagcggt tggtcgtcgg agctgtcgcg gggcacgcgg
    12421 gatagcccgg gagggctacc atccgacccg tggatggctt agttttaaag gcttaccgcg
    12481 aaattagaag acccgacgcg cagatcgcgc gacacgcaca ccctgttaca tggctttcga
    12541 caagactccg acaatcgaga aataccgcgc gagcgagacc gacaccggtt cctcacgcgt
    12601 ccaggtggcc gttctgaccg accggatcaa ctacctgaac gagcacttca agacccacaa
    12661 aaaggatcac cacagccgtc gtgggctatt gaagatggtt ggccggcgtc gccggcttct
    12721 cgattacatg aagcggacag aagttgaggg gtatcgccag ctcatcgccg agctcgggct
    12781 ccgttactaa cacgaaagtt gaacgggaaa acgcgcgtcg tggggatgac accgtagtca
    12841 tccatcatgc gcgcgtttcg tgcttcccac acctgtgcag gtgtgaatcg aaaacagaga
    12901 gaaaatccga gaaatgatga aacgtattga aagacagttc gccggccgta ccctgagcat
    12961 cgagacggga cgcatggcga aacaggcagc gggctccgcg cttgtgcagt tcggcgacac
    13021 gatggtcctc gtcgccgtca cggtgagcga caaggaaagc acgctcccat tcttccccct
    13081 cacggtcgaa taccgcgaca aggcttacgc cgcgggcaag attcccggcg gcttcatcaa
    13141 acgcgaggga cgtccgcagg ataccgaaat cctctcggcg cgaatcatcg accggtccat
    13201 ccggccgctg ttccccgaag gcttcaagaa cgaaacgcag gtcttcgtct cggtcatatc
    13261 agccgaccag gaaaacgacg ctgacgtact cgcgttgctc gcgacatcgt tcgcgctcaa
    13321 cgcttccaag attccattcg caggcccgat cgccgcggtt cgcgtcggac gcgtgcaggg
    13381 caagtgggtg ctcaatccca cattcctgca gctccagcac agcgagatgg acatcgtcgt
    13441 cgcgggatcc caggactcga tcgtcatggt cgagggcggc gcgatcgaag tcggtgaaga
    13501 ggatgtcctc ggcgctctga ccatcgcgca caagggaatc aaggagctgg tcgcgatgca
    13561 ggaagagctg ctcgccgata ccaggcagcc caagatgacg tggaccaagg ccgaggctcc
    13621 agtggagctc acggccgccg tcaacaagct cgcgcagggc aagatcgccg aggcgatcaa
    13681 ccaggccgac aagcacaccc ggatcgaggc agtcgaggct gtcaagaaag ccgcagtcga
    13741 tcaattgctc gcggacttcc cggataactc gaaggacatc gcgaatctcg tcggcgacct
    13801 cgaatacaac gcgcttcgct cgcaggtact cgacaccaag catcgcgtgg atggccgcac
    13861 gacgaccgaa gtgcgtcaga tcacgatcga cacgcacgta ctgccgcgtg cacacggttc
    13921 cgcattgttc acgcgcggtc agacccaggc gctcgtctcc gtaacgctcg gaactgctaa
    13981 cgacgtgcag cgtctcgatt cgatcgacga atcgggcgag accaccaagt cgttcatgct
    14041 gcactacaat ttcccgccgt tctcgaccgg cgaagttcgc ccgattcgcg gcaccagccg
    14101 tcgcgagatc ggacatggaa atctcgccga gcgcgcgctg cacgcagtgc tgccaccgtt
    14161 cgacgaattc ccatacacga tccgcatcgt ctccgacgtg ctcgaatcga atggatcatc
    14221 gtcgatggcg acggtctgtg gtggctcgct gtcgttgttc gacgctggcg tgccaatccg
    14281 ctcgccagtt gccggcgtcg cgatgggtct catcaaggaa ggcaagcgtt acgcgattct
    14341 caccgacatt ctcggcaccg aggatcacct cggcgacatg gacttcaagg tcgcgggaac
    14401 ggaaaaggga atcacatcca tccagatgga catcaagatc cagggactgg atctcaagat
    14461 catgcaggaa gcgatggcgc aggccaaaat cggccgtctg cacattcttg gcgagatgaa
    14521 caaggcgctg ccggcggtgc gtccggagct gtcgccgtat gcgccacgca tcgtcacggt
    14581 cagcatcaac cccgagaaga tcggtgagct gatcggaccc aagggcaaga cgattcgcgg
    14641 tattcaggaa gagactggcg ccgagatcag cgtcgacgac agcggcatgg tgactatcgc
    14701 cgccgttggt ggcgaggcaa tggagcgcgc gcggcagatg gttcaggcga tcacggccga
    14761 gcccgagatc ggtgccacgt acgaaggcac cgtcaagagc actacagcgt tcggcgcatt
    14821 cgtcgagatc atgccgggga ctgaaggtct cgttcacatc tccgagctca agcacgggcg
    14881 caccgagaag accgaggacg tcgtcaagaa gggcgatcgt gttcgcgtga aggttctcga
    14941 tcgcgacgag cgtggccgtc ttcgtctgtc gatgaaggca ctcgaaacac cgccggaagg
    15001 cagtgcggcg agcgagcgtg ctccgcgccc ggaatcttcc gcgcctgtag aaggcgacgg
    15061 acaacaggaa ggcggtgagc gcagtgagcg tcctcggcgg ccgcgcagca gtgggcgtgg
    15121 gcgcagggat tagcggcacc ggggcggacg tccagcggac ggttctcccg aacggactga
    15181 ccgtgctctc ggacaatgtt ccgggagtgc ggtcggttgc ctttggggcg tgggtacgcg
    15241 ccgcgacgtt gcacgagcgt gcggagaaga tgggaatctc gcacatgctc gaacacatgg
    15301 tgttcaaggg gactgaaagg cggagctcca aggacatcag tcttgctctc gagacgctgg
    15361 gcgggtcgct cgacgcgtat actgcgcgcg agcacacgtc gtatcaggcg cgagtgctgg
    15421 atgagcacat acgcgatgcg gcggacgtta tcggcgatct cgtttttcat cccgtgcttc
    15481 gcgcggccga cctcaatctc gagcgcaagg tcgtgatcga ggagatcgcg atggtggacg
    15541 acacgccgga cgacctggtg ttcgaggtcc acaatgaaaa gctgttcggc gacaatggtt
    15601 acggttatcg cattcttgga acgcgcgata cggtgtcctc gttcacgacc agtgatctgc
    15661 gcgagctgca cgccgcggcg taccggcccg gcaacatcgt ggtcgcggcc gcgggctcta
    15721 tcgatcacga cgagctcgtg aacattctcg gcgagacggg ctggctcgat gcccccgcgg
    15781 gaagcatcga tttcgcggcg cccgctcctg tatttcaagc gccgtcgtac acgcacgtcg
    15841 agcggcctgg cgcacaaacg cagctcgttt ttggcagcga ggcgcccgcg cacggcgacg
    15901 agcgcagata tgcattctgt ctcatcagca tgttgctggg cggcggaatg agctcgcgac
    15961 tgtttcagca tgtgcgcgag gagctgggac tggcgtacgc cgtgcacact ttctcgtcgt
    16021 tctattcgcg cgcggggatg catggagttt atgttggtac gtcacccgaa tcggcggacg
    16081 acgccgcggg cgcggtaatc gctgagcttg cgcgcatcgc gatcgatggt ataccggcgg
    16141 acgagctcgc cgccggcaaa cagcagttga agggtcagat tacactctcg ctcgagacgc
    16201 cgagtgcgcg catgtaccgc gcggccggcc tcgagctgta cggagagccg ttccgctcac
    16261 tcgatgagat gttgtcgctg gtggatgcga tcgatgagca gacggtttcg gaagtttgct
    16321 ctgcgtgttt tcagccgtcc ggacagacag tcgtcagcct cggacctgca cctctaacaa
    16381 ttctgtaata cggccatgaa gatcggagtc ccgaaggaaa tcaagaccaa tgagaaccgc
    16441 atcgcgctgg tacctgccgg cgccgaagct ctcgtagcag ctggtcactc ggtgatgatc
    16501 gagaagggcg gcggcgaggg aagcggattc tccgacgaca tgtatacgtc ggtcggcgcg
    16561 accatcggtg ccgacgcgga tactgtctgg cgcgaggccg acatgatcat gaaggtcaag
    16621 gagccgatcg cggttgaatg gccgcgcatg aagaaaggcc aggtgatctt cacgtatttc
    16681 cactttgcgg ctgacgagaa gctcaccaag gcgcacatgg acagcggggc gatctgcatc
    16741 gcctacgaga ccgtcgagct cgcgaaccac gagctgccgc ttctcactcc gatgtcggaa
    16801 gtcgcgggtc gcatggctgt gcaggaagga gccaagtacc tggagaagct atacggcggc
    16861 cgcggcgtac tgctcggcgg cgtccccggc gtggcgccgg ccaaggtcgt gatcatcggt
    16921 ggcggtgtgg tcggcgtcaa tgccgccaag atggccgccg gactcggcgc caaggtcgcg
    16981 gtcctcgacg tgtcgctgga gcgtctccgg tatctgtccg atgtgatgcc cgccaatgtc
    17041 acgctcatct actccaacag gcacaatctc ctggagcaga tccgcaccgc cgacctggtg
    17101 gtcggaggcg ttctgattcc aggggcgaag gcacccaagc tcgtccgccg cgaggatctc
    17161 aagaccatgc agcagggttc cgtgatcgcc gacgttgcca tcgatcaggg cggatgtttc
    17221 gagaccagcc acccgactac gcacgaaaat ccgacctacg tggtcgacgg cgtgatccac
    17281 tatgccgtgg cgaacatgcc gggcggtgtg cctcgcacct ccacgctggc gctcaccaat
    17341 gctaccttcc cgtacgcgct gcttctcgcg aataagggct ggaagcaggc gcttcgcgat
    17401 aacgcggcgt tgcgaaaagg cctcaacatc gtcgagggca aggtcaccta tcctggtgtg
    17461 gccgaagctt tcggaatgcc attatccgat ccggacacat tcatcaagta gtccggtacc
    17521 accctcgtaa cttgtaggaa agcacgcatg cgctggccgt tcttcaaagg tgggtccttc
    17581 ttcccggcga ccgggatcgc cgtggacctt gggaccgcga acactcttgt ttatgtcaag
    17641 ggtgaaggga tcgttctcaa cgagccctcc gtagtcgcgc tcgatcgcga aaccaggaag
    17701 gtgaagggtg ttggcctgga ggccaagcgc atgctcgggc gtactccgga aaacgtcata
    17761 gcagttcggc caatgaagga cggcgtcatt gccgacttcg acgttactga gaagatgctg
    17821 cgctacttcc tggcgctcat catcgagaat cacgttttcc gtgtgaagcc gcgcgtgatc
    17881 gtctgcgttc cgtccggcat caccgaagtc gagaagcgcg cagttcgcga ctcggccctt
    17941 ggtgcaggcg ccaaggaagt gatgatggtt gccgagccga tggctgcggc gattggcgtt
    18001 ggactgccgg tcgacacgcc cacgggcaac atggtgatcg acatcggcgg cggaactact
    18061 gaaattgcag taattgcgct ttccggcatc gtcagcgaca cctcgatccg caccggcggc
    18121 gacgaactgg atcaggcgat tctccagttc atgcgcaaga accacagcct gctgatcggc
    18181 gaggctaccg ccgagcaggt gaagatccag atcggctcgg cgcaccctgt cggcgacgag
    18241 cgcgagatgg acgtcaaggg ccgcgacctc gtttcgggaa ttcccaagac cgtccgcgtt
    18301 cattcgtccg agatccgcga agcagtgcag gagccaattc agcagatcgt cgacgcggtg
    18361 cgtcgcgctc tcgaaatcac gccacccgag ctcgcagccg atatcgtcga tcgcgggatc
    18421 gtgatgacag gcggcggcgc gttgattcgc ggtctcgatg ttctacttgc tcaggaaacc
    18481 ggcctctcaa ttcatgttga cgaagatccg ctgacgtgcg tggtgcgcgg gacaggccgg
    18541 atcctcgacg acgaagaaaa gtactggtcg gttctctccc cctgaggtag agggtggcgc
    18601 gcatcggacg ctcgaacaac cggatcgata ggaccgtact gctcgtctgt gcggttctct
    18661 cgctgatcgc gctcgtcctc ccgacacagg tacgcgaacc aatcgcgagc ggtctccgtc
    18721 gcagtatcct ggccccgttg ctcagactgc agcagagcgc ggaggagagc cgccgcgccc
    18781 tcacgatgca cgatgctgtt gtatcgcagc gtgattcgat cgcgctccgc gaaatgggag
    18841 tcgagtctct ggaaaccgag aatgtgcgcc tccgcgagat tctggggctg ggcagccggc
    18901 tcaagtgggg atttgttcca gctgaggcgc tgcacggccg cggcgtccgc gacgagttcg
    18961 gtgtgacatt gagtgccggc tcccgcgcgg gtgtgttgaa actgagcccc gtagtcgctc
    19021 ccgaaggtct cgtcggtgtg gtcgacaacg tggatccgat gatcagccat gcgatggtgt
    19081 ggactcaccc ggatttccgt gtcagcgcga tggccgagga cgcgtctgcg ttcggaatcg
    19141 tgcaggcaca tctcgagtca ggtgcggggc gctatctcat ggagatgcgc ggagttccgt
    19201 tccgcacttc catcaagccg ggaacgatgg tggtgagctc cgggctcggc ggcgtctatc
    19261 cgcgtggcat tccgattgga cgtgtgattg gcgagacgaa gaccgccgaa acatgggccc
    19321 ggacgtatct catccggccg gctgtctttc ccgcggatgt gtacgccgtg atgattctgc
    19381 ggccggaccg cgctacggcg ggcgtcgaca atgtgtgggc cgtcggcacg attgcagatt
    19441 cgtcagttcg aaaggtcgtg gctgcaggtg actcgctcgc ccgcacagcg gcgcttgccg
    19501 aagcgagcgc gcgtcaggcg gtgcaggatt ccatcacgcg tgacagtctg agaagagcgg
    19561 gagttccgga gcagagcatc gttcctccgg cagacagtct ggcgcgtgcg aagcgtccca
    19621 tcatccgccg cgacagcgtc agggtcgaca cgacgcgccg tgatacgctg cgtcgcgcgc
    19681 ccgtgagacg tgacactgtt cctggtccgc acactccatg acgactaccg catgacgatc
    19741 gctggaacca ttcgagcagt catcactttc gccgtactgg tgctgctgca cttcacactg
    19801 cgaccgttgc tgggctggcg cgctccgatc gactttctat tgcttgccgt cctcaccgcg
    19861 tccgtgcgag ttcgtcccgc tggcgccgtc gtcataggat tcgtcgtcgg catagtcgcc
    19921 gattcgctgt cgcccgacac gctcggtgcc ggcgcgttgg cgatgatctt cgtcgcgtat
    19981 ctcgcgtcct ggctcaaggc agtgttcttt gctgacagcc tgccgctcaa cgcaatgttc
    20041 ttctttgcag ggaagtggct cttcgatatt gtttacttta tcgcagagca tcgtctttcc
    20101 ggaattgatc tcgtgcagca acttgttctc tggtcgccac tgtcggccgc cgcgacggcg
    20161 ctcgcaggcg tcgtatttct gctcgtgacg cgcccgtttc tggagccggc gccagggtga
    20221 gtatccatcc gaatgacgtt gcccgtcgct cgcgcgtggc gaaggcaggg ctcggtgtgg
    20281 tcatcctgtc gttgatgggc gcgttcttca acgcgcaggt tctccagcac gatcgctaca
    20341 agctgcagtc acaggagaat cgactccgcg ccctgccgct ggccgcgccg cgtggcatca
    20401 tctacgacag attcggcaat atcatagccg agaacctgcc cggttacgcc gtgtcgatag
    20461 cacctgtgaa cgccgactcg ctcaagtcag cgctgcaaca tctttcgagc gtcatatcgc
    20521 tcacgcccga ccagatggac gccgcgttgc gccgctaccg gcgcgacccc aatcggccga
    20581 cgttgatcat gtcggatgcg tcgatgagcg tggtatcggt actggaagag caccgcatca
    20641 atttcccccg tctgataatt cagtcggtgc cgaagcggtt ctacccggac ggacccgcgg
    20701 ttgcatcgtt cgtcggttac actggcgaaa tcacggatgc ggatctcaat tcgccggcgt
    20761 atgacgggta caagccggga cagctcgtcg gcaagggcgg aatcgagaag gaatacgaaa
    20821 aaatcctgcg cggccgcgag ggagtccgtt acgatgaggt cgacgcacgc gggcgccagg
    20881 tacgtcaggc aacgccgcga ttggatctca atcccgagcc aggtccgccg ctgcgtacca
    20941 acatcgatct cgacctgcag cgttatgtcg ccagcgtgtt cggcgattcg ctggtcggtg
    21001 gcgcaattgc gctggatccc cgcgacggcg gtgtgctcgc gttgtacagc gcaccgagct
    21061 acgacgtcaa caagttcacc ggcggaattc ctgccgacta ctggaaggaa ttgctatcgg
    21121 acgagcgccg cccgctcgtc aacaaggtga cgcagggtcg ttatccaccc ggctcgactt
    21181 tcaagctcgc caccgcggtt accggcctgg aagacggact cgtaacgctg gacgaacaga
    21241 tgccggtgcc gtgcaccggg ggctttcagt acggcaaccg ctacttcaag tgctgggaca
    21301 agaagggaca tggcagtatc tcgctcgcgc gagcgatcga agtctcgtgc gatgtgtact
    21361 tctaccagct cggattgaaa atcggcctgt cgcgaatgat tgcgggcggc atatcgcttg
    21421 gcatgcgcga caagaccggt atcgaccttc cggacgagaa gcgcgcgctg tggccgtacg
    21481 ctgtggacta ctacaacaag acgtacggcg cgcgcggctg gagcaacgcc gtgacactca
    21541 acctctccat tggacagggt gagaactcgc agacggtggt gaacatggcc aagttctata
    21601 ccgcgctcgc aaccgacggc aacgcagcca cgcccgagat cgtgaagcgc gctcccgtca
    21661 ggacgcgagt gttcaaactc gaccagcagc agatggatgg gcttcgtacg gcgctggctg
    21721 gtgttatcgg gcagggcacc gcgcaatcgg cgcgcattca gggaataatg ctcgctggca
    21781 agaccggaac ggcgcagacg ggcaagcgcg tcaacggcgt cgagctcaac catgcatggt
    21841 ttgtaggctt tgcaccggcc gacaaaccga cgatcgtcgt cgccgtaatg ctcgagtatg
    21901 gcgggcatgg cggccgcgcg gcgcacgtcg cgtcgtccat catcgcgcac tacctcaagg
    21961 tcgcgcccgt cacagccgta cagtctgagg gttgatgttc cgaaatacac tcaccgatta
    22021 tcccctcgca gcgaccgcga tagcactctc gcttttcggc gtcgcaatcg tgtattccgc
    22081 cggacagacc gacataccga cgtacgtcgc tccgctctgg aaatcgcagc tgatgtggct
    22141 ggtcctcggc gtgctgtgtg catggggaat tggcaactct tcggtgcggc tcatcgagtg
    22201 ggtcacatgg ccggcgtacc tgctcacgct gcttacgttg gcgtcactgc tcgtgctcgg
    22261 caccggaacc ggcgccaacg gtcacatgcg cagctggctg gcgattggtg gccatcggct
    22321 gggtcagccg gcggaactcg ccaagatcat cgtcgtgctg atgctggcga aggtgctcgc
    22381 ggagcgaaga gaggcgccca agtcgctgct ggagttatgg aaaccgggac ttgttgtcgg
    22441 cgtgccgttc gcgatgatca tgctgcagcc cgatctcggt tcagcgatcg tcttcgttgg
    22501 aatctttttc gggatgttgt tctggtccgg cgtcccatgg ccgctgctcg tgttgctggc
    22561 gagcccggta gtgagcctcg tgctgtcgtt cagcacggga ttgtggggcg catggttcct
    22621 ggtgctgatc gctctcgtgc tgtggtacaa gccgtatctg ctcgagggga tagttctggt
    22681 tgtcgcgaac gtcgcgacgg gtgtcatcgc gcccatactc tgggagaagc ttgcgcccta
    22741 tcagcagaac aggctcaagg tattcctcga tccgtcagcc gatccgcgcg cgtcgggcta
    22801 tcacgttctg caatcaaaga tcgcaatcgg ctcaggcggg ctgttcggta atggcttcac
    22861 gctcggcacc cagaaacgaa gcggcttttt accggagcag cacaccgact ttattttcgc
    22921 cgttgtaggc gaggagctgg gattcatcgg agtcgcgctt gcgctcgcgc tcttcctcgc
    22981 actgttgctt cgcgccacac ggatcgcgtc gcgcgcgaac gattcgtttg gcagcctggc
    23041 cgcgttcggg ttgatgtcgt gctggctggt gcacgtggtg gtgaacatcg gaatgacgct
    23101 caacctgatg ccgatcaccg gaatcccact gccgttcttc agctacggcg gctcattcat
    23161 gcttgcgagc tggctcggcg ttggagtgtt gctgcggata tccggcgagg gcaggggaca
    23221 cgcgggggcg ctgctgtcgt agcgcgatga ttgccggact tcgtcattgt cggcgttgcg
    23281 atcacagccc cagtgctgga aacctcgcga cgttcgtctc ccgcacgatc tcgtacaccg
    23341 cgtcgaaaac cgtctcgacg ttgggcttgg accagtagtc gccatca
//
LOCUS       DATIMD010000252         1677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4719488, whole genome shotgun sequence.
ACCESSION   DATIMD010000252 DATIMD010000000
VERSION     DATIMD010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4719488"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            150..1142
                     /locus_tag="VLI40_05930"
     CDS             150..1142
                     /locus_tag="VLI40_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96749.1"
                     /translation="MTSIDSFAAKPIAIYHEHPDWFRPLFAELDRREIPYVRLDAAAH
                     TFDPSERTTPYSLVVNRASPSAYLRGHAQSTFYTLHWLRHVERLGVPVVNGSECYGYE
                     LSKATQLDILDSLDLPYPRSRVINDPAQAVRAAEGLRYPVLVKANIGGSGAGIVKYET
                     PEALEREVASGNVFLGVDGTALVQEAAPLRDGHITRVETLGGKYLYAINVYPATGSFD
                     LCPADACQTTNGVELVRGACAVDAPKTGLRVEAATPSAEIIAQVEEIARATRLDVGGI
                     EYLVDDRDGKHYFYDINALSNFVADAENVIGFDPFVRLVDYLVERAGFVAEEVA"
     gene            1139..>1677
                     /locus_tag="VLI40_05935"
     CDS             1139..>1677
                     /locus_tag="VLI40_05935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HSU96750.1"
                     /translation="MMRYGYWMPVFGGWLRNVEDENMQASWDYVSRLARRSEELGYDI
                     TLVAELLLNDIKGINAPSLDAWSTAAALVAVTRTLEVMVAVRPSFHPPALLAKQAATI
                     DRISNGRLSLNVVSAWWKDEARRYGVAFDEHDDRYARTSEWLDIVSSAWREEKLDYSG
                     KYYTVDELILEPKPVARTER"
BASE COUNT          329 a          494 c          543 g          311 t
ORIGIN      
        1 ccgccacgta aaaaaatgag ctaaaacgcg agatagcccg ggcgacaaca cgtagcccgg
       61 gctttgtcgt tgccagcggt gggtgcttgg agagactctc ccctggcggt gcagcgaatc
      121 gtgttggcgg ccctcacgga acaaccgcca tgacaagcat cgattcattc gcagcaaagc
      181 cgatcgcgat ctaccacgag cacccggact ggttccggcc gctctttgcg gagctggatc
      241 gccgggaaat tccgtacgtc cgactggacg ccgccgcaca tacgttcgat ccttccgaac
      301 ggacgacacc atactcgctg gtggtaaatc gcgcgagtcc gtccgcatat ctgcgtggac
      361 atgcgcaatc cacgttctac acactgcact ggcttcgcca cgtcgagcgg ctgggcgttc
      421 cggtcgtgaa cggcagcgag tgctacggct acgagctctc caaggcgaca cagctcgaca
      481 ttctcgactc actcgatctg ccgtacccgc gctcacgcgt gatcaacgat ccagcgcagg
      541 ctgttcgcgc tgcagaggga ctgcgttatc cggtgctcgt gaaggcgaac atcggcggta
      601 gcggcgcggg gatcgtgaag tacgaaacgc ccgaagcgct ggagcgtgaa gtagcgagcg
      661 gcaacgtctt tctgggcgtt gatggaaccg cactcgtgca ggaggctgca ccgctccgag
      721 acggtcacat cacgcgcgta gagacactcg gcgggaaata tctgtacgcg ataaacgtgt
      781 atccggcgac cgggtcattc gatctctgcc cggccgacgc atgccagacc accaacggcg
      841 tcgagctcgt gcgtggcgcg tgcgccgtgg atgcaccgaa gaccggtctg cgtgtcgaag
      901 ctgcgactcc gtccgccgaa ataattgcgc aggtcgagga gatcgcgcgc gcgacacggc
      961 tggacgtcgg cggcatcgaa tacctggtgg atgatcgcga tggcaagcac tacttctacg
     1021 acatcaacgc actctcgaat ttcgtcgcgg atgcggagaa tgtgattggt ttcgatccgt
     1081 tcgtgcggct tgtcgattac ctggtggagc gtgccggctt cgttgcggaa gaggtggcat
     1141 gatgcgctac ggatactgga tgcccgtgtt cggcggctgg ctgcgcaacg tcgaggacga
     1201 gaacatgcag gcgtcgtggg attatgtctc gcgactcgcg cgccggagcg aggagctggg
     1261 ttacgacatc acgctcgttg cggagctgct gctcaatgac atcaagggca tcaacgcgcc
     1321 gtcgctggac gcatggagca ccgctgccgc gctcgtggcg gtgactcgta cactggaagt
     1381 gatggtcgcg gttcgaccgt cgtttcatcc gcctgcattg cttgcgaagc aggccgcgac
     1441 gatcgaccgc atctcgaacg ggcggctgtc gctcaacgtg gtttccgcct ggtggaagga
     1501 cgaggcgcga cgttacggag ttgcgttcga cgagcacgac gacaggtacg cacgcacgtc
     1561 ggaatggctc gacatagtaa gctccgcctg gcgcgaggag aagctcgatt acagcgggaa
     1621 gtactatact gtcgacgagc tgattctcga accgaagccg gttgcgcgca cggagcg
//
LOCUS       DATIMD010000253         5168 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4138510, whole genome shotgun sequence.
ACCESSION   DATIMD010000253 DATIMD010000000
VERSION     DATIMD010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5168
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4138510"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..193)
                     /locus_tag="VLI40_05940"
     CDS             complement(<1..193)
                     /locus_tag="VLI40_05940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96751.1"
                     /translation="MSDHGPHVFTRGEVIAGSQTPIASWVKMSCVILAIIGTVTFIFG
                     AFVGADRAWQALHFNWLFFS"
     gene            complement(190..990)
                     /locus_tag="VLI40_05945"
     CDS             complement(190..990)
                     /locus_tag="VLI40_05945"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HSU96752.1"
                     /translation="MNARAIRALLAIAPLTLSLSACEWFSDFRRQPALHPWQPIHCDA
                     RRDVCDETIPSRGNPQNSVSIYGTERAGFETSYAALPGTIDSMSNLVNPTPPTAASLA
                     NGHKYFAVNCEVCHGEKGLGDGPATKYGMIGINLTMDLTKSRTDGYIFGMIRNGRGAM
                     PSYNRIEEMDRWDVVNYVRALQGKLGVTVPTGPLAEPGVTGRWVPGYTKTAPDRPAPF
                     VPPYEGSAKAWYHAGEAPPALDMRSPRVGPPPLDSNVYKTGIPQEVKR"
     gene            complement(980..1480)
                     /locus_tag="VLI40_05950"
     CDS             complement(980..1480)
                     /locus_tag="VLI40_05950"
                     /inference="COORDINATES: protein motif:HMM:NF023249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3341 domain-containing protein"
                     /protein_id="HSU96753.1"
                     /translation="MRGVIGLFRELDTTCDAIAMLKKRKVGEFTVYSPTPRHEIEHAI
                     DKGPSAVRVFTLIGGLAGVTFGYWIAIWISDYWPLVVGGKAIATWIPYTVFGFEVMVL
                     IGALATVAGLFATARFPRITHTVGYDSRFSYGDYGVWIEPSPDKLQEAEQLLRDAGAV
                     EVRVER"
     gene            complement(1480..2940)
                     /gene="nrfD"
                     /locus_tag="VLI40_05955"
     CDS             complement(1480..2940)
                     /gene="nrfD"
                     /locus_tag="VLI40_05955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrfD/PsrC family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HSU96754.1"
                     /translation="MATATKPVDDVELLRRPNIPSADIRLPAVKDYEQVDDEITATLH
                     PTVQWFIGLGVAITFLVIGALAWTYQIYTGLGVAGYNPPVMWGVYIVTFVFWVGIGHA
                     GTLISAILYLFRAGFRTTIYRCAEAMTVFAVMTAGLFPILHLGRPWKFFWLIPYPNWR
                     YIWPQMKSPLVWDVFAILTYLTVSATFLYIGLVPDFAILRDRETNPVRKRLFSQLALG
                     WRNTDREWRHFVRAYLFLAAFSTPLVLSVHSVVSFDFAMSDVPGWHTTVFPPYFVAGA
                     IYSGIGMVFTIIIPLRKWFNLKHYVTINDLDAAAKLALFTSLVVGVSYACEWFVAWYS
                     GSPAEKQFFANRLWGQWWWASALLYTCNICLPLSLFSQWCRRNTTWLFILSIFINIGM
                     WFERFVIVVPSLSHEYEPWQWAGYRPTWVDYAILCGSFGWFSMWFLLFIKQFPVIALT
                     EIKEIVKPRLKFRHPQGVDTTAHPLPFMPDTPGEFD"
     gene            complement(2951..>5168)
                     /locus_tag="VLI40_05960"
     CDS             complement(2951..>5168)
                     /locus_tag="VLI40_05960"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HSU96755.1"
                     /translation="ARALSGELPVAQAAQQSGVDEKRLQSLVDEYRAAKPSLVLAGGH
                     VASSAELFAAVAALNRASGAVGTTIRPDQAFLGYEGIAPAAQLRAIGDRMNSGAVPLL
                     MIRGANPAYTMPRSTGFAAAMKKVPFKVSFASIMDDTSEMCDLILPDHHSLEQWGDAE
                     PVKGTLSLQQPTMDPVFDSLATSDVLIKIAKGDPATAAKYPQPDYRTWLIARVPGGEE
                     GMRAGLPTAIVAGSALARTAVRPALPAIPAVPAIAATTGDMFLFIYHHPVLGDGRGAN
                     KPWLQELPDPVTKLTWQTVIEMHPLTAAKMGLDNSDLVTVTTSAGSLTAPVYLYLGIR
                     QDTVAIATGRGHVNAGRYAKAGENAYDLVPLAENAAGGIALVSTKAKVTKAGGSMLLA
                     TTEGSARQHLRDIARAIPVGELGAGAAKHEEPEEEHLPGDASHEFLPGLRSPVANDAQ
                     GDFGDPTSKDLGMYNPDHWSNMAKRRWAMTIDLARCTGCAACVTACYAENNIPTVGAD
                     WQTPQILPDRTGFGANITRSREMAWIRLERYYEGGEDGSADFETRFIPMMCQHCGNAP
                     CEPVCPVYATYHAPDGLNVQVYNRCVGTRYCSNNCPYKVRYFNWFGYGEPHRPQYAFP
                     EPLNWQLNPDVTVRGKGVMEKCSMCVQRIRGAEHRAKLENNRPVRPDEFTTACAEACP
                     SRAITFGDASDESWSVTRLIKDERAYHVFEELNTFTAVVYLKKVNHPSPATEPAHA"
BASE COUNT         1055 a         1582 c         1560 g          971 t
ORIGIN      
        1 tgctgaagaa cagccagttg aagtgcaacg cctgccacgc acgatcggca cctacgaacg
       61 caccgaagat gaacgtcaca gtcccgatga tggcgagaat cacgcacgac atcttgaccc
      121 agctcgcgat cggcgtctgg ctgccggcga ttacctctcc ccgcgtgaag acgtgcggtc
      181 catgatcgct catcgcttca cctcctgcgg aatacctgtc ttgtacacgt ttgaatcgag
      241 cggtggtgga ccgacccgtg gcgacctcat gtcgagtgcg ggcggagctt cgccggcgtg
      301 gtaccacgcc ttggcgctcc cttcatacgg cggaacgaaa ggcgccggac gatcgggtgc
      361 tgtcttcgta tatccgggta cccagcggcc cgtgacaccg ggctccgcga gcggtcccgt
      421 tggaacggtc acaccgagct taccctgcag cgcacggaca tagttgacga cgtcccagcg
      481 atccatctcc tcgatccggt tgtacgacgg catcgcaccg cgtccatttc ggatcatgcc
      541 gaagatgtag ccatcagtgc ggctcttggt gagatccatt gtgagattga tgccgatcat
      601 tccgtatttc gtagcgggac catcgcccaa tcccttctca ccgtgacaga cctcgcagtt
      661 gactgcgaag tacttgtgac cgttggcgag tgacgcagcg gtaggcggag tcggattcac
      721 cagattcgac atcgagtcga tcgtgccagg aagcgcggcg tatgacgtct cgaagcctgc
      781 acgctcggtg ccgtagatcg ataccgagtt ctgcggattg ccgcgcgatg gaatcgtctc
      841 gtcgcagaca tcacgacgag catcgcaatg aatcggttgc cacgggtgca gcgctggctg
      901 gcgacggaag tcgctgaacc actcgcacgc cgagagactg agagtaaggg gcgcaatggc
      961 gagcagcgcg cgaatggctc tagcgttcaa cgcgcacctc cacggcacca gcatcacgta
     1021 gcaactgctc tgcctcctgc aacttgtctg gcgatggctc tatccagacg ccgtaatcac
     1081 cgtaactgaa cctggaatcg tatcccaccg tgtgcgtgat acgagggaat cgcgcggtcg
     1141 caaacagtcc ggccacagtg gcgagcgctc cgatgagcac catcacctcg aagccgaaca
     1201 ccgtgtacgg aatccatgtc gcaatagcct ttccaccgac aacgagcggc cagtaatcgg
     1261 atatccagat cgcgatccag tatccgaacg tgacgccggc caatccgccg atgagtgtga
     1321 aaacgcgaac cgcgctcggt cccttgtcga tcgcatgctc gatctcgtga cgcggtgttg
     1381 gagaatagac cgtgaattct ccaaccttcc tcttcttgag catcgcaatc gcgtcgcagg
     1441 tagtatccag ctcgcgaaac agcccgatta cgccgcgcat cagtcgaact cccctggtgt
     1501 gtcaggcatg aatggcaacg ggtgagctgt agtatccacg ccctgcggat gccggaactt
     1561 caatcgcggc ttcacgatct ccttgatctc cgtcaacgcg atcacgggga actgcttgat
     1621 gaagagcagg aaccacatcg agaaccagcc gaacgatccg cacagaatcg cgtaatcgac
     1681 ccaggtcgga cgatagccgg cccactgcca cggctcgtac tcgtgcgaca acgacggaac
     1741 aacgataacg aagcgctcga accacatgcc gatgttgatg aatatcgaca gtatgaacag
     1801 ccaggtggtg tttcggcgac accactgcga gaagagcgac agcggcaggc atatgttgca
     1861 ggtgtacagc aacgctgatg cccaccacca ctgaccccac agacggttcg cgaagaactg
     1921 cttctcggcg gggcttccac tgtaccatgc gacgaaccac tcgcaggcgt acgagacacc
     1981 gaccacgagc gaggtgaaca gcgccagctt ggctgccgcg tcaagatcgt tgatggttac
     2041 gtagtgcttg aggttgaacc atttgcgcag cggaatgatg atcgtgaaga ccattccgat
     2101 gcccgagtag atcgcgccgg ccacgaagta cggcgggaac accgtggtgt gccagccggg
     2161 cacatccgac attgcgaagt cgaacgacac cactgagtgc actgaaagca cgagtggcgt
     2221 ggagaatgcg gccaggaaga gatatgcgcg aacgaaatgg cgccactcgc gatccgtgtt
     2281 acgccatccc agcgcgagct gagagaacag ccgcttgcgc accgggttcg tctcgcgatc
     2341 gcgcaggatc gcaaaatcag ggacgagtcc gatgtaaagg aaggtcgccg ataccgtgag
     2401 gtatgtcagg atcgcgaaca cgtcccacac cagcggactc ttcatctgcg gccagatgta
     2461 gcgccagttc ggatacggta tgagccagaa gaacttccac ggacgcccaa ggtgcagaat
     2521 cgggaacagt cctgcggtca tgacggcaaa caccgtcatc gcttctgcgc atctgtaaat
     2581 cgttgttcgg aatccagccc ggaacagata tagaatcgcc gagatgagcg ttcccgcgtg
     2641 tccgataccg acccagaaca cgaaggtgac gatgtagacg ccccacatga ccggcgggtt
     2701 gtatccggcg acgccgagcc ccgtgtagat ctggtatgtc caggcaagcg cgccgattac
     2761 gaggaaggtg atcgccacac caagtccgat gaaccactgg accgttgggt ggagagtcgc
     2821 ggttatctcg tcatcgacct gctcgtagtc ctttacggcg ggaagtcgta tgtctgcgct
     2881 cgggatgttc ggccggcgca gcagctcgac gtcgtctacc ggtttggttg cagttgccat
     2941 ccgcggactc ctacgcgtgc gccggctcgg tagccggcga cgggtgattg actttcttca
     3001 agtagactac cgcggtgaat gtgttgagct cttcgaatac atgataagca cgctcgtcct
     3061 tgatcaaccg tgtgaccgac cacgactcgt cagaagcgtc accgaacgtg atggcacgcg
     3121 acgggcacgc ttccgcgcac gcagtcgtga actcgtcagg ccggaccggg cggttgttct
     3181 cgagctttgc gcgatgctcc gcaccgcgga tacgctggac gcacatggag cacttctcca
     3241 tgacaccctt tccgcgaacg gtgacgtccg gattgagctg ccagttgagc ggctccggga
     3301 acgcatactg cggccgatgt ggctcgccgt aaccgaacca gttgaagtaa cgaaccttgt
     3361 acgggcagtt gttggagcag tagcgcgttc cgacacaacg gttgtaaacc tgaacgttga
     3421 gaccatccgg cgcgtgatac gtcgcgtaca cggggcagac gggctcgcac ggtgcgttgc
     3481 cgcagtgctg gcacatcatc ggaatgaagc gcgtctcgaa atcggcgctg ccgtcttcgc
     3541 cgccctcgta gtaacgctcg agccggatcc acgccatctc gcgactgcgt gtgatattgg
     3601 cgccgaaacc cgtgcgatcc ggaagtatct gtggcgtctg ccagtcagct ccgaccgttg
     3661 ggatattgtt ctcggcgtag catgccgtta cgcaagctgc gcacccggtg cagcgcgcga
     3721 gatcgatcgt catggcccag cgtcgcttgg ccatgttgct ccaatgatcg ggattgtaca
     3781 tcccgagatc cttggaggtc ggatcgccga aatcgccctg ggcgtcgttc gcaacgggcg
     3841 agcgaagtcc gggcagaaac tcgtgcgaag cgtcgccggg caggtgctct tcttccggct
     3901 cttcatgctt cgcggcgcca gcaccgagct cgccgacggg aatcgcgcgc gcgatgtcgc
     3961 gaagatgctg ccgcgcagaa ccctcggtcg tcgcgagcag catgcttccg cccgccttcg
     4021 tgacttttgc tttcgtgctc acgagcgcga tgccgcccgc cgcgttctcc gcaagcggga
     4081 cgagatcgta tgcgttctca ccggcctttg cgtagcgacc cgcgttgaca tggccacgtc
     4141 cggtcgcgat ggcaacggtg tcctgcctga taccgagata cagatacacc ggcgcggtaa
     4201 gcgagcctgc gctcgtcgta accgtgacga ggtcgctgtt atccagtccc atcttcgccg
     4261 cagtgagcgg atgcatctcg attaccgtct gccacgtaag cttggtaacg ggatcgggaa
     4321 gctcctgcag ccacggcttg ttggcgccgc gaccatcacc aagtaccgga tgatggtaga
     4381 tgaagaggaa catgtcgccg gtcgtcgcgg cgatggcggg taccgccgga atcgcgggaa
     4441 gtgcaggacg caccgccgtg cgggcgagcg cgctgccagc gacgatcgcg gtcgggagac
     4501 cggcgcgcat tccttcctcg ccgcccggga cacgcgcgat gagccaggtg cgatagtccg
     4561 gctgcggata cttcgcagcc gttgccggat cgcccttcgc aatcttgatg agcacatccg
     4621 acgtcgccag tgaatcgaat accggatcca tcgtcggctg ctgcagcgat agagttccct
     4681 tcaccggctc ggcatcgccc cactgctcga gcgaatgatg atccggaaga atcaggtcac
     4741 acatctcgct cgtgtcgtcc atgatgctcg cgaacgacac cttgaacgga accttcttca
     4801 ttgcggccgc aaagcccgtg ctcctgggca ttgtgtatgc cggattcgcg ccgcgaatca
     4861 tgagcagcgg aacagcaccg gaattcatgc ggtcgccgat cgcgcgcagc tgggccgcag
     4921 gtgcgattcc ttcgtaaccg agaaacgcct gatcgggacg aatagtcgta ccgaccgcac
     4981 cactcgcgcg attgagtgcc gcgacggctg cgaacagctc ggcagagctg gcgacgtgtc
     5041 cgccggcaag cacgagtgat ggcttagccg cgcggtattc gtcgacgagc gattgcaggc
     5101 gtttttcatc gacgccgctc tgctgcgcag cctgcgctac cggcagctcg cccgagagtg
     5161 cacgtgcg
//
LOCUS       DATIMD010000254         2349 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3562813, whole genome shotgun sequence.
ACCESSION   DATIMD010000254 DATIMD010000000
VERSION     DATIMD010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3562813"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2131
                     /locus_tag="VLI40_05965"
     CDS             <1..2131
                     /locus_tag="VLI40_05965"
                     /inference="COORDINATES: protein motif:HMM:NF025141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HSU96756.1"
                     /translation="AAVTRSASHVTATLMDGVLHYEVDETFVNHGGRIGEADYVFPLP
                     HDAAFSDLKLSINGELVGGETMDAQHARSIYEEIVRRQRDPALVEWMGYGMLRTRIFP
                     ILPGESKRVVVRFDQIAEREGDALRIDYTMGAPLGRAPIVRNVLVDDSDDSAASTFTL
                     RYAENRNYGKPYSPTHELRSVSRDGMNVVSARGDARALTLLLPAAHGNGSPTITLLAN
                     DDGRQDGFALINVVPPTVSTDVTPRDITFVLDVSGSMAGSKMEQARAAGRQLLSSLNP
                     RDRFRLIDFSTDVRSFRDGFTQATPSNVRAALSYLASLSAQGSTNISGALSEALRHGD
                     DQHAERLQVVLFLTDGQPTIGETSADAIAAEAAQLRGSARVFTFGLGGDVNASLLEQL
                     ALQGRGTAQFVRPSEDVERAVAVVSQRLTNPIATNVRVSADGVRLSRILPGSPIDVFA
                     GQNIVILARYAGDGSATLHFDGDSPRGAVHWTQRVTFPRDRRDNQFVGRLWATQRIGY
                     LSAERRRVGGNPELDNEIRSLGEQFGIPTEFTSYLVQEPRPTGMPVIMMRGAASMGTA
                     LNQVIVSGAAASAPSAFEVARKATAQRAATTLAAADAATDSTAGGVVDGAIRHVGDRS
                     FIFANGIWADTRASAVQRDSSVTRLRVQAFSAAYFRVLDIVPSIKPMLALGDHVIVAG
                     RGIVLEVGPQGVTNLGARDVASLRAGW"
BASE COUNT          425 a          690 c          782 g          452 t
ORIGIN      
        1 cgcggcggtg acgagaagcg cttcacacgt gactgccact ctcatggacg gcgtgctgca
       61 ctatgaagtc gacgagacgt tcgtgaatca cggcgggcga atcggcgagg cggattatgt
      121 atttccactg ccgcacgacg ctgcgttcag cgatctcaag ctttcaataa acggagagct
      181 cgtgggcggc gagacgatgg atgcgcagca tgcacggtcg atctacgagg agatagtgcg
      241 ccgccagcgc gatcctgcgc tggtggaatg gatgggctac ggcatgcttc ggacgcggat
      301 atttcccatt ctgccgggcg aatcgaagcg cgtcgtggta cggttcgatc agatcgccga
      361 gcgtgagggc gatgcgctgc ggatcgacta cacgatgggc gcgccgctcg gtcgcgcgcc
      421 gatcgtgcgc aacgttctgg tggatgacag cgacgacagt gctgcatcca cgttcacgct
      481 gcgatatgcg gagaaccgca attacggaaa gccgtactct cccacgcatg agctccgatc
      541 cgtttcgcgc gatggaatga acgtcgtaag tgcgcgtggt gacgcgcggg cgctcactct
      601 cttgctgccg gcggcgcatg gaaatggaag cccgacgatc acactgctgg caaatgacga
      661 tggccgccag gacggcttcg cgctgatcaa cgtggttcct ccgaccgtat cgacggacgt
      721 cacaccacgc gacatcactt tcgtcctcga tgtgagcggg tcgatggctg ggagcaagat
      781 ggagcaggcg cgtgctgcgg gccggcagtt gctgtcatcg ctcaatccgc gcgaccggtt
      841 ccggctcatc gacttctcga cggatgtgcg gagcttccgc gacggcttca ctcaggcgac
      901 tccttccaac gtacgtgcag cgctttcgta tctcgcatca ctctcggcgc agggttcgac
      961 gaacatctcc ggtgcactct cggaagcatt gagacatggc gacgatcagc acgccgaacg
     1021 acttcaggtc gtgctctttc tcacggatgg ccagcctact atcggagaga cgagtgccga
     1081 cgcgatcgcc gcggaagcgg cacaactgcg cgggagcgcg cgcgtgttca cattcggcct
     1141 cggcggcgac gtcaacgctt cgctgctgga acagctcgca ttgcagggtc ggggcaccgc
     1201 gcagttcgtg cggccatcgg aggatgtcga gcgcgcggtg gctgtggtat cgcagcggct
     1261 caccaatccg atcgccacga acgtacgcgt atccgccgat ggcgtgcgac tgagcaggat
     1321 ccttccgggc tctccgatcg atgttttcgc gggacagaac atcgtgattc tcgctcgtta
     1381 tgcgggtgat ggatccgcaa cattacactt cgacggtgac tcgccacgcg gagcggttca
     1441 ctggactcaa cgagtaacgt tcccgcggga tcggcgcgac aatcaattcg tcggtcgact
     1501 gtgggcaacg caacgcatag gatatctgag cgcggagcgc cgtcgcgtgg gtggtaaccc
     1561 ggagctggat aatgaaatcc gctcgctggg agagcagttc ggcattccga ctgaattcac
     1621 ttcgtatctg gtgcaggagc ctcgtccaac gggtatgcct gtcataatga tgcgcggcgc
     1681 ggcgagcatg gggacagctc tcaaccaggt gatcgtgagc ggcgcggcgg cgtccgcgcc
     1741 gagcgcgttc gaagtcgcga gaaaggcaac cgcgcagcgt gcggcgacga cgctggctgc
     1801 ggcagacgct gctactgatt cgaccgccgg tggcgtcgtc gatggtgcga ttcgtcacgt
     1861 tggcgaccgc agcttcatat tcgcgaacgg aatctgggcc gacacgcgcg cctccgcggt
     1921 gcagcgtgac agcagtgtga cgagattgcg cgtccaggcg ttttcggcgg catatttcag
     1981 agtgctggac atcgtcccat ccatcaagcc aatgcttgcg ctcggcgatc acgtgatcgt
     2041 ggcgggacgc gggatcgtgc tggaagtcgg tcctcagggc gttaccaatc tcggcgcacg
     2101 tgacgtcgcg tcgctgcgcg ctggctggtg agatgcgtgt acgcagcgat gcgctggctc
     2161 cgggattgag acgctcatga ctgacgtcga gcggttattc cggagctacc acgccactct
     2221 cgttcggtat cttacgcgcc gtctgggcga tcgtgactgg gccgaggaga ttgcgcagga
     2281 gacattcgtg cgcgcgctgc gtcaggatac gctcacgaac gagcgcgcgt ggctcttcgc
     2341 ggtggcgac
//
LOCUS       DATIMD010000255         4734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_964214, whole genome shotgun sequence.
ACCESSION   DATIMD010000255 DATIMD010000000
VERSION     DATIMD010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4734
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_964214"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..318)
                     /locus_tag="VLI40_05970"
     CDS             complement(<1..318)
                     /locus_tag="VLI40_05970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96757.1"
                     /translation="MTILRPAVAADIPALSSLIEASARELSVGFYTPEQIDAAVTHIF
                     GVDSQVIADGTYYLIEEDREPVAAGGWSARRTLYGGDQMKDMEDPRLDPTVDAARIRA
                     FFVH"
     gene            complement(327..2396)
                     /locus_tag="VLI40_05975"
     CDS             complement(327..2396)
                     /locus_tag="VLI40_05975"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 and transglutaminase domain-containing
                     protein"
                     /protein_id="HSU96758.1"
                     /translation="MRPTFKYEMRELITQLRFVSVGTRRRARRLENLLLIRTSVSAVA
                     LALVSSLAVAQAPHITPAGDPSVNADTIYRLAVKAEDFPEEAGVLLLDDGVLHIEKDG
                     REESTYRQITQILRPEAVDRYREQQFSYAPKHQRFTLNWIRVVKPDGTVVSAAPSQVQ
                     ESDVPAQFGDPTYSDEKVIRVSLTGVAPGTIVDVSYTTTELKPFLAGDFFDSWNVSSG
                     PQVMRSRYVVDVPAGFTPRIREDNLNFARTEKTANGRHTYTWATSNIKSVKSEAFESD
                     SNGVYMSVVVSSPTTWAAIGKWYAGNARDRYVASPAVDSAVTQAVKGAKTLDDSIRAV
                     HRWVAQDIRYVSIALGLGGYQPRSPDEVVRTGFGDCKDKATLFIVALKRLGITAFPVI
                     LNSSGHVQRSMPSISQLDHAIAAFKRPGDTRYEFADLTASLTPLGELPFDYQGEFGMI
                     VHPDGSIEEITFPKASIADNSGVRRIVGTLSADGQFTGTYEETGLGSRQYSLRSAFEN
                     PLDSAQRAKAANAIAGNIFEGAQGDSLTGFAGKDLAVKPKMSVIIRDGRAASMAGTNA
                     ILTNPFGTMSGFSSAAKEIETAGPRLFPIAADKIFGYGVTTMEFRVTMPDGWHAQLPA
                     DVDASSEFGKYHSEYAQSGHDLVVKRTITGAGGNYAPDQLKPMLEWMRKIATDDAKLI
                     VIEKGAR"
     gene            2492..>4734
                     /locus_tag="VLI40_05980"
     CDS             2492..>4734
                     /locus_tag="VLI40_05980"
                     /inference="COORDINATES: protein motif:HMM:NF014442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HSU96759.1"
                     /translation="MDSLTHAARIVNATSQPGGIDALLATLGFTEQSHPLDAASRTRL
                     GLPATVLSARISTSTGSLRAMSAEIEHDANTREAITAIARQLRMHAPHLLWLVVVSHR
                     NGSTLGVATWRGDRSSPQIVAMITERGNVVDSDAETLCALSGTTAATGDEMRHMRWLD
                     ILGRDALTRRFFHALTNSIGALADSLPPLVPAADARQIAILTTSRLLFLSFLETKGWL
                     NSDFGFLANGFTECMAAGGSYQRRVLEPLFFGTLNTRTSERAPRSRAFGRIPFLNGGL
                     FSRTTIERIHRHSRFSDDALGALFGDVLVRYRFTASEDATTWSQAAIDPEMLGKVFES
                     LMESGDRKRGGVFYTPQDLVERLTTLAFRAALERSGMPRTQAEQLLDVQAQNTRPNPS
                     VLEDVKRLRILDPACGSGAFLVYALERIARLRIALGDTDSPGSVRRSVLQRSIFGVDS
                     NPTAVWLCELRLWLSAVIDSDEQDPMRVVPLPNLDRQIRVGDSLAGDAFGSRSSLVTV
                     PGRTSALRNRYTRSSGRRKLSLGRQLDAVERACAIEAIDARITAARFERREILRAVRS
                     RDLFDLRTPPDSRQRDRLLELRSATRALRRKRIAIKRGATPAFAYPVHFADVAESGGF
                     DIVIGNPPWVRVHNMHADDRARYRESFSVFRRGGWSEGARGASAGQGFAGQTDLAALF
                     VERSIDLLAPNGIMGLLLPSKLWNSLAGGSARQLVLERTRILTLADYSNAPDAFEAAV
                     YPSMLVA"
BASE COUNT          876 a         1552 c         1380 g          926 t
ORIGIN      
        1 atgaacgaaa aatgctcgta tacgagccgc gtccaccgtc ggatcgagcc ggggatcctc
       61 catgtccttc atctgatcgc cgccgtaaag cgtgcgccgc gcgctccagc caccagctgc
      121 gacaggttcg cgatcctctt cgatcagata gtacgtgccg tccgcaatca cctggctatc
      181 gacaccaaat atgtgcgtga cagccgcatc gatctgctcc ggagtgtaga agccaacact
      241 gagctcgcgc gctgaagctt cgatgagcga gctgagtgca ggaatgtcgg ccgcaacagc
      301 gggacgaaga attgtcacac acccactcag cgcgcaccct tctcgatcac gatcaacttt
      361 gcgtcatccg tcgcgatctt ccgcatccac tcgagcatgg gcttgagttg atcgggagcg
      421 tagttaccgc cagcgccggt gatcgtgcgc ttcaccacca gatcatgtcc cgactgcgcg
      481 tattcactgt ggtacttgcc gaactcgctc gacgcatcga cgtcggccgg tagctgagcg
      541 tgccagccgt ccggcatcgt gacacggaat tccatcgtcg tcacgccata gccgaatatc
      601 ttgtccgccg caattggaaa cagccgcggg ccggctgttt ctatttcctt tgccgcggag
      661 gaaaagccgc tcatcgtgcc gaacggattt gtgagaatcg cgttggttcc agccatcgat
      721 gccgctcgcc catcccgaat gatcaccgac atcttcggct tcaccgcgag atccttgcca
      781 gcgaatccgg tgagactgtc gccctgggca ccctcgaaga tgttacccgc tatggcattg
      841 gccgccttgg ctcgctgcgc ggaatcgagt gggttctcga aagcgctccg caacgaatac
      901 tggcgcgagc cgagcccggt ctcttcgtac gtaccggtga actgtccatc cgccgaaagc
      961 gtaccgacga tgcggcgcac acctgaattg tccgcaatgg acgctttcgg gaacgtgatc
     1021 tcctcgatgc ttccgtcagg gtgaacgatc atcccgaact ctccctgata gtcgaacggc
     1081 agctcgccca gcggagtgag tgacgcggtg agatcggcaa attcgtatcg tgtgtcaccg
     1141 ggccgcttga acgctgcgat tgcgtgatcg agctgcgata tggatggcat gcttcgctgc
     1201 acatgtccac tcgaattcag aattaccgga aacgcggtga ttcccagtcg cttgagagcg
     1261 acgatgaaga gcgtagcctt gtccttgcaa tcaccgaatc cggtgcgaac cacctcgtcg
     1321 ggcgatcttg gttgatagcc acccaatcca agcgctatac tgacgtaccg aatgtcctgc
     1381 gcaacccagc gatggacggc acggatcgag tcatccagcg tcttcgcgcc cttgaccgcc
     1441 tgagtgaccg ccgaatcgac ggccggcgaa gcgacgtatc ggtcccgcgc atttccagcg
     1501 taccactttc caatcgccgc ccaggtggtc ggcgacgata ccacgactga catgtacacg
     1561 ccgttcgaat ccgactcgaa tgcctcggac ttgacgctct tgatattgct ggtagcccac
     1621 gtataagtgt gacgtccgtt ggcggtcttc tccgtgcgcg cgaagttgag attgtcctcg
     1681 cggatgcgcg gcgtgaaccc ggccgggaca tcgaccacgt agcgcgagcg catcacctgc
     1741 ggtccgctgc tcacgttcca cgagtcgaag aaatcaccgg cgagaaatgg cttcagctcc
     1801 gtcgtcgtgt agcttacgtc gacgatcgtg cccggcgcga ccccggtgag cgacacccgt
     1861 atgaccttct catccgaata tgtcggatcg ccgaactgcg cgggcacgtc tgattcctgc
     1921 acctgcgacg gcgccgcact cacgacggtg ccgtcaggtt tgactacacg aatccagttg
     1981 agcgtgaatc gctggtgttt tggcgcatag gaaaactgct gctctcgata tcgatcgacg
     2041 gcctcggggc gcagtatctg ggtgatctgc cggtacgtcg attcttcccg cccatccttc
     2101 tcgatgtgca atacgccatc gtccagaagc agaacgcccg cctcttcggg aaaatcttcc
     2161 gccttgaccg cgagccggta gatcgtgtcg gcgttgaccg acggatctcc agcgggcgtg
     2221 atgtggggag cctgcgcgac cgcaagcgac gatacaagag cgagtgcaac cgcggacacc
     2281 gacgtgcgga taagcaagag gttctccagg cgccgcgcgc gtcggcgagt cccgacgctc
     2341 acgaagcgta attgagtgat gagctcgcgc atctcatact taaatgtcgg acgcaacgac
     2401 gctcgccgcc agttcccgcg cgatagataa ttgattccac cggtccagac ctgctcagtc
     2461 tcgccgcctc agcggcacgt actgtggctg agtggactct cttactcacg cagcgcgcat
     2521 cgtcaacgcc acttcccaac ctggcggtat cgacgcgctg ctcgcgacgc tcggcttcac
     2581 cgaacagtca caccccctgg acgccgcatc acgaactcgg ctcggactcc ctgccacggt
     2641 gctgtctgcc cgtataagca cgagcaccgg ctccctccgc gccatgagcg cggagatcga
     2701 acacgatgcg aacacccgcg aagccattac tgcaatcgcg cgccagctca ggatgcacgc
     2761 gccgcacctc ctctggctcg tcgtcgtcag tcatcgcaac ggatcgacac tcggcgtcgc
     2821 cacatggcgc ggtgatcgct ccagcccgca gatcgtcgca atgatcaccg agcgcggcaa
     2881 cgtcgtggac agcgacgcgg agacgttgtg cgcgctctcg ggtacaaccg ccgcgaccgg
     2941 cgacgaaatg cgtcatatgc gctggctcga catactcggt cgcgacgcgc tgacgcgccg
     3001 attcttccat gctctcacaa attcgatcgg tgcgcttgcc gattcacttc cgcccctcgt
     3061 accggcggca gacgcgcgcc agatcgcgat tctcactacg agccgccttc tcttcctgtc
     3121 gtttctcgaa accaagggct ggctcaacag cgactttggc tttctcgcca acggcttcac
     3181 ggagtgcatg gcggccggag gctcatatca gcgccgcgtg ctcgagccgc ttttctttgg
     3241 cacactcaac acgcgaacct ccgagcgcgc accgcgatcg cgtgcattcg gacgcatccc
     3301 gtttctcaat ggcgggctct tctcgcgtac gacaatcgag cgcatccacc gccactcgcg
     3361 cttctccgat gatgcgctcg gcgctctgtt cggcgacgtc ctcgtacggt atcgctttac
     3421 cgccagtgaa gacgcgacca cgtggtccca ggcggccatc gaccccgaga tgctcggcaa
     3481 ggtattcgaa tcgctcatgg aatccggcga tcgaaaacgc ggaggagtat tctacacgcc
     3541 gcaagacctt gttgagcggc tcaccaccct cgcgttccgg gccgcactcg agcgcagtgg
     3601 gatgccgcgc acgcaggccg agcagttgct cgatgtccag gcgcagaata cgcgcccgaa
     3661 tccgagcgtg ctggaggacg tgaagcggct tcgtattctc gatcccgcgt gcggctccgg
     3721 cgcgttcctg gtttacgcac tggagcgcat cgcgcggctt cgaatcgcac tcggtgatac
     3781 agactcgcca ggcagcgtgc gacgctcggt gcttcaacgg tcgattttcg gcgtggactc
     3841 caaccccacg gcggtatggc tctgcgagtt gcgcctctgg ctgtctgccg taatcgacag
     3901 tgatgaacag gatcccatgc gcgtggttcc gcttcccaac ctcgatcgcc agatccgggt
     3961 cggagactca ctcgccgggg atgcattcgg gagccgctcg tcgctcgtaa cggtgccggg
     4021 acgcacatcg gcactacgga accggtatac gcgctccagc ggtcgtagaa agctctcact
     4081 tgggcggcag ctcgatgctg tggagcgcgc gtgcgcaatc gaggcgatcg acgcacgtat
     4141 caccgcagcg cgattcgagc gccgggagat ccttcgcgcg gttcggtcgc gcgatctgtt
     4201 cgacctgcgc acgcctccgg attccaggca gcgcgaccgg ttactcgagc tgcgctccgc
     4261 gacacgagcg ctacgacgaa agcgtatcgc gatcaagcgc ggcgcgacac ctgcgttcgc
     4321 atacccggtt cattttgcgg acgtcgccga gtccggtgga ttcgacatcg tcatcggcaa
     4381 tcccccgtgg gtgcgagtgc acaacatgca cgccgacgac cgcgcgcgtt atcgcgagag
     4441 tttcagcgtg tttcggcgcg gcggctggtc ggagggagca cgtggtgcaa gcgccgggca
     4501 ggggttcgcc ggacagaccg atctcgccgc gttgtttgtc gagcggtcaa tcgacctgct
     4561 tgcgccgaac ggcatcatgg gactgcttct gccatccaag ctgtggaact ccctcgccgg
     4621 cggcagcgca cgccagctgg tactcgagcg gacccgaatc ctcacgctcg ctgattattc
     4681 caacgcgccc gacgcttttg aagccgcggt gtatccctcg atgctcgttg caag
//
LOCUS       DATIMD010000256         2597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4428340, whole genome shotgun sequence.
ACCESSION   DATIMD010000256 DATIMD010000000
VERSION     DATIMD010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4428340"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1070
                     /locus_tag="VLI40_05985"
     CDS             <1..1070
                     /locus_tag="VLI40_05985"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU96760.1"
                     /translation="LYSLSEQLGARLKALQSDEALVSAVVESLSEGVLAISARRAVLR
                     INTAARGMLGIHEPVPFPVDHIPRERELHAALDSALDGVPSDGDAVEILGRMVAVAAR
                     PLPDGGAVLALTDLTKTRRLETTRRDFVANVSHELRTPLTVIGGFAETLGEPDVDDGD
                     RIRFASLIQSNTARMQRIVDELLDLSRIESGGWVPRPVNVDVAAVAAEAIASSAEVAA
                     ANDVITEAQVSNDARWVYADRTALRQVISNLVENAVRHTSHGTVTVFAHRDGDGYTVV
                     GVRDSGVGIAPAHLPRIFERFYRADSARSRDKGGTGLGLAIVKHLVEAHGGTVRAESV
                     LGRGTTVSASFPAAVSAPRDA"
     gene            1170..2234
                     /gene="pstS"
                     /locus_tag="VLI40_05990"
     CDS             1170..2234
                     /gene="pstS"
                     /locus_tag="VLI40_05990"
                     /inference="COORDINATES: protein motif:HMM:TIGR00975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HSU96761.1"
                     /translation="MIRPVRIATLTAVMSGAFVSMASAHAGAQSTAQATNLTGAGSSF
                     AYPIYSKWAAMYAAKTGVRINYQSIGSSGGIRQLSEGIVDFGATDGPMTNDQLAKAKG
                     GAILHFPTVLGGVAVTYNLPGVAQPLKLTGPVLADIFMGGITKWNDSRVAALNPGVRL
                     PSTDVIVVHRADGSGTTFIFSDYLATVSTSWAGKVGRGQSLNWPVGLGGKGSEGVTGQ
                     VKQLPGAVGYVELSYAKQNKLPVALIRNAAGAWIAPTLESVTAAAAGAVAKIPANTDY
                     RISIVNAPGRAAYPISSFTWILVYEHAKDPAKGKALANFLRWAYRDGESVAGSLDYAP
                     LPATMVRRLDARLTALGASK"
     gene            2237..>2597
                     /locus_tag="VLI40_05995"
     CDS             2237..>2597
                     /locus_tag="VLI40_05995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96762.1"
                     /translation="MRLPISFLAVAMLLPPAMMAQDTTRTDTTKAVTKVTIPIDFSGV
                     VFGNYQYQAAAGANKDQNKFDVERAYLTFKMPAGDRASIRVTGDLYQQTASGSDAYYK
                     GWVLRAKYAYLQYDFLKA"
BASE COUNT          513 a          778 c          831 g          475 t
ORIGIN      
        1 cattgtacag cctgtccgag cagctcggtg cgcggctcaa ggcgttgcag agtgacgagg
       61 cgctggtctc cgcggtcgtg gaatcgctga gtgaaggcgt acttgcaata agcgctcgcc
      121 gggcggtgtt gcgcatcaat accgctgcgc gcggcatgct tggcatccac gaaccggtac
      181 cgttcccagt ggaccacata ccgcgcgagc gggaattgca tgcggcactc gacagcgcgc
      241 tggacggcgt tccatccgac ggcgacgccg tggagattct gggccggatg gtagccgtgg
      301 cggcgcggcc actgccggac ggcggtgcag tactcgcact cacagacctc actaaaaccc
      361 gtcgactgga aacgacgcgg cgtgattttg tcgcgaacgt gtcgcacgag ttgcgcacac
      421 cgctcaccgt gatcggcgga ttcgccgaga cactgggcga gccggacgtc gacgacggcg
      481 accgaatcag atttgcatcg ttgatccagt ccaacaccgc tcgaatgcag cgtatagtgg
      541 acgagctgct ggatctgtcg cgcatcgagt ctggcggctg ggtaccgcgg ccggtgaatg
      601 tggacgtcgc tgctgtcgcc gccgaggcga tcgcctccag tgcagaggtt gcggctgcca
      661 atgacgtgat aacggaagcg caggtctcga acgacgcgcg ttgggtatac gcggaccgca
      721 ccgcgttgcg gcaggtaatc tccaatctcg tggagaatgc cgtccgccac acgtcacacg
      781 gaaccgttac ggtgtttgct catcgcgacg gcgacggata caccgtggtt ggagtgcgag
      841 attccggggt cggcatcgca cccgcgcacc tgccgcgcat cttcgagcgt ttttaccgcg
      901 ccgattcggc gcgctcgcgc gacaagggtg gtaccgggct cggactcgcg atcgtgaagc
      961 atctggtgga agcgcatgga gggacggtgc gcgccgagag cgtgctcgga cgcggcacga
     1021 cggtgagcgc atcgtttcct gctgccgttt cggcaccgcg cgacgcgtga cgacgcagcc
     1081 gtgacatagc cgttaccgaa tcgcggtgaa ttccgtgatg tgagagagcg atcatcaggt
     1141 gctggttcaa acctctcacg gagtaacctg tgattcgacc tgttcgtatt gcgacactga
     1201 ctgcagtgat gtcaggcgca ttcgtctcca tggcaagcgc acacgcgggc gcgcagtcaa
     1261 ccgcgcaagc aaccaatctc accggcgccg gatcgagctt cgcatatccc atctactcca
     1321 aatgggccgc gatgtacgcg gcgaagaccg gagtaaggat caactaccag tccatcggat
     1381 cgagcggcgg gattcgtcag ttgtcggaag ggatcgtcga tttcggcgcg accgacggcc
     1441 caatgaccaa tgaccagctt gcgaaggcga agggcggcgc gatcctgcac tttccgactg
     1501 tactcggtgg tgtcgctgtc acgtacaatc ttcccggcgt tgcgcagcca ctcaagctca
     1561 cggggcccgt tctagcggac atcttcatgg gcggaatcac gaagtggaac gactcgcgcg
     1621 tcgcggcact caaccccggc gtaagacttc catcaaccga cgtgatcgtc gtacatcgcg
     1681 ctgacggcag cggcacgacg ttcatattca gcgattacct agcgacggtc agcacatcgt
     1741 gggctggcaa ggtgggccga ggtcagagcc tcaactggcc agtgggactt ggcggcaagg
     1801 gcagcgaagg cgtcacgggt caggtgaagc aacttcccgg agccgttggt tacgtcgagc
     1861 tgtcgtacgc caagcagaac aagctcccgg tggcgctgat cagaaatgca gctggtgcgt
     1921 ggattgcacc gacgctggag tcggtgaccg cggccgctgc tggagcagtc gcgaagattc
     1981 ccgcgaacac ggactaccgc atctcgatag tgaacgcgcc tggcagggcg gcgtatccca
     2041 tctcttcgtt cacctggata ctcgtatacg agcacgcaaa ggatcccgcg aagggaaagg
     2101 cgctcgccaa cttcctgcgt tgggcgtaca gggacggcga atcggttgcg gggtcgctcg
     2161 attatgcacc gctgccggca acgatggtcc gtcggctcga cgcacgtctc acagcgctcg
     2221 gagcgagcaa gtaaccatgc ggcttcctat ctcgtttctc gccgtcgcca tgctgcttcc
     2281 gccggcgatg atggctcagg acacaacccg gaccgatacc accaaagcag ttacgaaggt
     2341 aacaatcccg attgacttct ctggcgtcgt gttcgggaat tatcaatacc aggctgccgc
     2401 tggcgcgaac aaggatcaga acaaattcga cgtcgagcgt gcgtatctca cgttcaagat
     2461 gccggctgga gatcgcgcca gcatccgtgt cacgggcgac ctgtatcagc agacagcatc
     2521 aggcagcgac gcgtactaca agggttgggt gctgcgagcc aagtacgcgt atctgcagta
     2581 cgacttcctc aaggcga
//
LOCUS       DATIMD010000257         3718 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5298567, whole genome shotgun sequence.
ACCESSION   DATIMD010000257 DATIMD010000000
VERSION     DATIMD010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3718
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5298567"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..721)
                     /locus_tag="VLI40_06000"
     CDS             complement(<1..721)
                     /locus_tag="VLI40_06000"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU96763.1"
                     /translation="MRTAGSKLTIAHASAWVLGAALLLFLAVPIILLVLLGGAGIGSA
                     LRDRDMIAALETTFVTATVATLLAALCGSPIAYALSRTKFRGRALIAAIVDLPLLIPH
                     PVAGIAILLLVSRDTPFGSTLLDLGLRVVGTPAGIVAAMLFVSAPLYVSAAREAFARV
                     DRRYEFVARTLGDTPWSAFRRVTLPLARRGLASAAIVTWARAVSEFGAVVVLAYNPKV
                     VSVLSYDRFTTGGLRDALPIAA"
     gene            complement(727..1374)
                     /locus_tag="VLI40_06005"
     CDS             complement(727..1374)
                     /locus_tag="VLI40_06005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96764.1"
                     /translation="MRMSWPYLHTLVNHFPIVLTVIGALAVLVAAMVPRRATWVYALS
                     TLTLAGITVYPAWWSGHRAARAVHDAWYIQRGAVPAHSAAADITVWIVGVVGLLALLA
                     LMTMVRTREAVSPARALRVIVGLGALVSICAVSYTGYLGGRIVVESPILASPTPPPPV
                     TAPVPSATPAPAAATPSPTAKPATPDSSHPIVNPSVNPPTTPPSQTTPAPQSRTP"
     gene            1492..2289
                     /locus_tag="VLI40_06010"
     CDS             1492..2289
                     /locus_tag="VLI40_06010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSU96765.1"
                     /translation="MTQNAIEARHVNKQYSGHVAVRDLSLSVPVGSVYGLLGPNGAGK
                     TTTIRMVLNIIEPDSGTIDVLGVPATSTAISDRIGYLPEERGLYRKMKVRDVLKFLAA
                     LKGVPAHEAERRIDWWLDKLSLRTDERDWGSAKIEELSRGMQQKAQFIGALVHDPDLM
                     ILDEPFSGLDPVNAQALKDSVMDLRSRGKTVIFSTHIIENAESMCDSVCIIARGEKVL
                     DGTLADVKNEYGGPPVAKTVMVQPSLYDIFLQRVGATGVEPGMRGHG"
     gene            2282..3625
                     /locus_tag="VLI40_06015"
     CDS             2282..3625
                     /locus_tag="VLI40_06015"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU96766.1"
                     /translation="MADTGSKLWAIVRREYIERVRTRWFMISTIFAPVLFAAIAFLPL
                     LLMNKDAKSVAPRVLIVDATQQGLGKYVARSLAVLRSTSEDATTADVRIVPYDSLAQA
                     RDDATSEVAKRLANGFVVLDSATLRGDTVAYAGRQADSKSDRLTIANSVRSGLIALRL
                     ARGGLSEPAIDSIVSAPIPTVQATSINDAGRDVATPAKAIIATIVAFFLYMSILIYGQ
                     NMLSGVIEEKMSRVAEIVISSVKPETLLAGKVIGVTAVGLTQQIVWVGGTILLISART
                     MLFGAPAIAKAQASGAAGGFGSNDMLAALIATPWSWVILVLVFFLLGLLFYGALYAAV
                     GATVGSEQDARQAAFPVVLLLVLTAVLISPTVQNPTSQLAVTMSMLPFSSPIILPIRM
                     AITNVPVIQVVASLAILVLSCLGAVWLAGRIYRVGLLMYGKRPTLAEVRRWIFAS"
BASE COUNT          706 a         1130 c         1193 g          689 t
ORIGIN      
        1 tcgccgcgat agggagggcg tcgcgcaatc caccggtcgt gaagcggtcg tagctcaaca
       61 cgctcacaac ctttggattg taagcgagca cgaccactgc gccaaactcg ctcacagcgc
      121 gcgcccacgt tacaatcgcc gcggacgcca gaccgcgacg cgccagtggc agcgtcacgc
      181 ggcgaaaggc cgaccacggt gtgtcgccca gcgtccgcgc gacaaattcg tagcgcctgt
      241 ccactcgtgc aaatgcctcg cgcgccgcac tcacgtacag cggcgcggag acgaaaagca
      301 ttgcggcaac tatccccgcc ggagtgccga ccacgcgcag ccccagatcc agcagcgtgc
      361 tgccgaacgg cgtgtcgcgg ctcacgagca gcagaattgc gattccggcg accgggtgcg
      421 gaatcagcag cggaagatcg actatcgcgg cgatcagcgc acgcccgcgg aatttcgtgc
      481 gtgacagtgc atacgcgatt ggtgatccgc acaacgccgc gagaagcgtt gcgacggtcg
      541 ccgtgacgaa cgtggtttcc agcgcagcga tcatgtcgcg atcgcgaagc gcgcttccta
      601 tccccgcccc gcccagcagt acgaggagta ttatcggtac cgcgagaaat agaagcaggg
      661 ctgcgccgag cacccatgcg ctggcgtgtg cgatcgtgag cttgcttcca gcggtgcgca
      721 ctgacgttac ggcgtgcgtg actgtggcgc tggtgttgtt tgcgaaggcg gagtggtggg
      781 tggattcacg gacggattca cgatcggatg gctcgaatcc ggagttgccg gcttcgcagt
      841 cggcgatggc gttgcagcgg caggcgccgg ggtcgcactt ggcactggag cggtgacggg
      901 tggcggtggc gtcgggctcg ccagaatcgg tgactcgact acgatcctgc cgccgaggta
      961 gccagtgtag gaaacggcgc agatggacac cagagcaccg agtcccacaa tgacgcgaag
     1021 cgctcgggcc ggcgaaaccg cttcgcgcgt tctgaccatc gtcatgagtg cgagcagtgc
     1081 gagcagaccg acgacgccga cgatccacac tgttatgtca gcggccgccg agtgcgctgg
     1141 aacggctccg cgctggatgt accacgcgtc atgcacggca cgagcagccc tgtggccgct
     1201 ccaccaagcc ggatagacgg ttatgccagc cagagtaagc gtcgatagcg cgtagaccca
     1261 cgtcgctctg cgcggtacca tcgcagcaac caggaccgcc agcgcgccaa tcacggtcag
     1321 tacgatcggg aagtgattga cgagtgtgtg cagatatggc cagctcattc tcatttgtcc
     1381 gtgagacagg ttttttggtt gctcattttc tgcttgcgcc gtcgcaaacc ctgcgccggt
     1441 catcgtgtga cggactgcgg tccagcttct ccgaccctat atttggcgag aatgacccaa
     1501 aacgcaatcg aagcgcgcca cgtgaacaag cagtactccg gacacgtcgc cgtgcgcgat
     1561 ctgtcccttt cggtccctgt cggctcggtt tacgggctgc ttggccccaa cggcgccggc
     1621 aagacgacga ccatcaggat ggtcctcaac ataatcgagc cggactcggg aaccatcgat
     1681 gttctgggag ttccagctac ttcgaccgcg atttccgatc gcatcggtta tctccccgaa
     1741 gagcgcgggc tctatcgcaa gatgaaggtg cgcgacgtac tcaagttcct cgcggcgctc
     1801 aagggagttc ccgcgcacga ggcagagcgc cgcatcgact ggtggctgga caagctctcg
     1861 ctccgcaccg acgagcgcga ctggggctcg gccaagatcg aggagctgtc gcgcggaatg
     1921 cagcagaagg cacaattcat tggcgcactg gtgcacgatc ccgatctcat gatcctggac
     1981 gagccgttca gcggactcga tcccgtaaac gctcaggcac tcaaggattc ggtgatggat
     2041 ctcaggagtc gcggcaagac tgtcatcttc agcactcaca tcatcgagaa tgcggaatcg
     2101 atgtgcgact ccgtctgcat catcgcacgc ggtgagaagg tgctcgacgg aactctcgcc
     2161 gatgtgaaaa acgaatacgg cggaccgccg gtcgcaaaga cagtgatggt gcagccgtcg
     2221 ctgtacgaca tcttcctaca acgcgttggt gcaacaggcg tcgagccggg aatgcgcgga
     2281 catggctgat acaggctcaa aactgtgggc gatagtgcga cgcgagtaca tcgagcgcgt
     2341 gcgtacgcga tggttcatga tatcgacgat attcgcgccg gtgctatttg cagcgatcgc
     2401 gttccttcca ttgctgctca tgaacaagga cgcgaagtcg gtcgcgccga gagtgctgat
     2461 cgtcgatgcg acgcagcagg ggcttggcaa gtacgtcgct cgttcgctcg ctgttctgcg
     2521 cagcacgtcc gaagacgcga ccacggccga cgtgcggatc gtgccatacg actcgctcgc
     2581 gcaggcgcgc gacgacgcga cgtccgaagt cgcgaagcgg ctcgccaacg gcttcgtcgt
     2641 gctcgattcg gcgacattgc gaggtgacac cgtcgcgtat gcgggacgac aggcagattc
     2701 caagagcgat cgtctcacga tcgcgaactc ggttcgttcc gggctgatcg cgctgcggct
     2761 cgcgagaggc ggactctccg agcccgcgat cgacagcatc gtctcggcgc caattccgac
     2821 agtgcaggcg acgtcgatca acgacgcggg acgcgacgtc gccacaccgg ccaaggcgat
     2881 catcgccacg atcgtcgcat tcttcctcta catgtccatc ctgatatacg gacagaacat
     2941 gctgagcggt gtgatcgagg agaagatgtc acgcgtggcc gagatcgtca tctcgagcgt
     3001 gaaacccgag acattgctcg cgggcaaggt gatcggcgta accgcggtcg gcctgacgca
     3061 gcagatcgtc tgggtcggtg gtacgatatt gctcatctcc gcgcgtacga tgctgttcgg
     3121 cgcgccggcg atcgccaagg cgcaggcttc gggcgctgcc ggtggattcg gctctaacga
     3181 catgctcgca gcgctcatcg cgacaccatg gagctgggtt attctggtgc tcgtcttctt
     3241 cctgctcggg ctgctcttct acggcgcact gtatgccgcc gtcggcgcga ctgtgggtag
     3301 cgagcaggat gcgcgacagg cggcgttccc ggtcgtgttg cttctcgtac tcaccgcagt
     3361 gttgatctcg ccgactgttc agaatccgac gagtcagctc gctgtcacga tgtcgatgtt
     3421 gcctttttca tcgccgatca ttctgccgat acgaatggcg atcaccaacg tcccggtcat
     3481 ccaggtcgtc gcgagtctgg cgattctggt tctgagctgc ctgggtgcgg tgtggcttgc
     3541 gggccggatc tatcgcgtcg ggttgctcat gtatgggaaa cggccgacgc tggcggaagt
     3601 gaggagatgg atcttcgctt cgtgaacggc ggggacggag tagggacgga ctccgggccg
     3661 gagtagggac ggagtaggga cggactccac tccgtcccca ctccgtcccc ggtcctgc
//
LOCUS       DATIMD010000258         3852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4721557, whole genome shotgun sequence.
ACCESSION   DATIMD010000258 DATIMD010000000
VERSION     DATIMD010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3852
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4721557"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..653)
                     /gene="tatC"
                     /locus_tag="VLI40_06020"
     CDS             complement(<1..653)
                     /gene="tatC"
                     /locus_tag="VLI40_06020"
                     /inference="COORDINATES: protein motif:HMM:TIGR00945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HSU96767.1"
                     /translation="MARRRAAGGMAEMAFLDHLEELRQRLFRCAAAFAVGAIIAFLLF
                     TQVPHFDVIEFLSRPITPYLHGAKLIYLHPGDAFQIVLDAGFALAFIIASPVILYQLW
                     GFVSPAMYSHEKKLVLPVLGGIVVLFIAGVAMAFTLILPMTIKFLVGVESSALQPMIA
                     ASEYFGFAIYMCLAFGAAFELPIVIMGLTALGLTNPNFLAKYRRYAAVGGLIVGCFIT
                     "
     gene            complement(669..1415)
                     /locus_tag="VLI40_06025"
     CDS             complement(669..1415)
                     /locus_tag="VLI40_06025"
                     /inference="COORDINATES: protein motif:HMM:NF024915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSU96768.1"
                     /translation="MILATPLAMLFAGCFATQSDVQVLQSDIRTMRGEQLAADSARKI
                     QIDRALTSMRTANDSLNALSTRLTRFRSDMTSSMSSVQQQLLQVQELTGQSQRRIQEV
                     RASLEERQSATAAPDSTGAPATPGPNALFQVAREQMMQGSNSAARQAFQDLIAKYPKS
                     DVAPDAAFYIAETYAAENNTAAADSVYAQVASQYAGSPRAATAIYKRAVAAQAAGNGD
                     KARDLFNQLIKKYPRSDEAALARDRIKTIK"
     gene            complement(1421..2023)
                     /locus_tag="VLI40_06030"
     CDS             complement(1421..2023)
                     /locus_tag="VLI40_06030"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSU96769.1"
                     /translation="MHPSKLVVALVALTLVAACHKAPAALTPSPVSGNDSLDRARADS
                     IARANAARQAELARAQAEQDSLRAVREREQREAAQNADAAKVLGATIYYDFDKADLTE
                     AARSLLLAKVPVLQAQPTIHLRITGHTDDRGSSEYNLALGLRRAAEAKAFLVNNGIDA
                     SRLEITSMGAEQPAVQGENEEAWSRNRRSEFAPTSGGASQ"
     gene            complement(2036..3352)
                     /locus_tag="VLI40_06035"
     CDS             complement(2036..3352)
                     /locus_tag="VLI40_06035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96770.1"
                     /translation="MQLRQILIAAVASTALALAPATVRAQNPTVPEGVRLGLNYTLGT
                     KPGVLVLPMDSAGGDSVRAILQRDIDYDDRATVIALDDTSARAMMPKTGDNFNYPLFA
                     KLGVVAILRPQPSLTGITITMYDVAAKKRIQIGGFPLTDQVNSPAWRMAVHRASDEVE
                     RWIFGTPGAAATRILFSGGDKQIWVIDSDGENARKLTSVTLAMSAAWSPDATKFVFCG
                     FTPSGSQIAVYSFVTGDMHWLSGTARGLNITPTYSPDGRTIAYASGSEGGTDIMLMQE
                     GDASPSRRITVGRGSDNTSPAFSPDGRQIAFMSGRAGHPEVYTMDADGTNPSLLTEFT
                     YGEQAYRASPDWAPDGRRIAYESRIDGNFQIMTIDMRDRSTKQYTSDGQNEDPAWAPD
                     SRHMVFSSTRTGPRQLWVLDAESGRMRQLTHAAGARLAAWSPILKP"
     gene            complement(3352..>3852)
                     /locus_tag="VLI40_06040"
     CDS             complement(3352..>3852)
                     /locus_tag="VLI40_06040"
                     /inference="COORDINATES: protein motif:HMM:NF024503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HSU96771.1"
                     /translation="NPAPTPPKMRETPSSVPPAPTKAPPTPTTRATPVEAPPKKAPAP
                     ATKAPKAGGGPTGGRGTDVATVQTAGIDFPFPGYLNNIVRQIALNFRIKNPNSPLSAT
                     MSFLIHRDGSVTDVKFVNRSGVYSFDLEAQGAIERASSSFGPLPDGFRDDVLPVVFSF
                     DPRFLQ"
BASE COUNT          696 a         1176 c         1227 g          753 t
ORIGIN      
        1 gtgatgaagc agcccacgat cagcccgccg accgccgcgt atcgccggta cttggcgaga
       61 aagttggggt tcgtcaggcc gagtgcggta aggcccatga tcacgatcgg aagctcgaac
      121 gcggcgccga aagccagaca catgtagatc gcgaagccga agtattccga ggccgctatc
      181 atgggctgca gtgctgacga ttcaacgccg acgaggaatt tgatcgtcat cggcaggatc
      241 agcgtgaagg ccatggccac gccggcgatg aagagcacca cgataccgcc gaggaccgga
      301 agtaccagct tcttctcgtg cgagtacatc gccggcgaga cgaatcccca cagctggtac
      361 agtatgacgg gcgacgcgat gatgaacgcc agcgcgaagc cggcgtcgag cactatctga
      421 aatgcatcgc ccggatgcag gtagatgagc ttggcaccgt gcagatatgg cgtgatcggc
      481 cgcgaaagga actcgatcac gtcaaagtgc ggtacctgcg tgaacagcag gaacgcgatg
      541 atcgcgccga ccgcgaacgc cgcggcgcac ctgaacagtc gctggcgcag ctcctcgagg
      601 tgatcgagga acgccatctc ggccattccg ccagccgcac gacgcctagc cacgatcgcc
      661 tccgcctgct acttgatcgt ctttatacgg tcccgagcca acgcggcctc gtcggagcgc
      721 ggatatttct tgatgagctg attgaacagg tcgcgcgcct tgtctccgtt gccagccgcc
      781 tgcgcggcaa ccgcgcgctt gtagatcgcc gtcgccgcac gcggtgagcc ggcgtactgc
      841 gacgcaacct gcgcgtagac agaatctgca gcggcggtat tgttttccgc cgcgtacgtc
      901 tccgcgatgt agaacgccgc gtccggcgcg acgtcggact tgggatactt ggctatcaga
      961 tcctggaatg cctgacgggc cgcggagttg ctgccctgca tcatctgctc acgcgcgacc
     1021 tggaacaacg cgttggggcc aggtgtcgcc ggcgctcccg tcgaatccgg tgcggcggtc
     1081 gcgctctgac gctcctcgag cgacgcacga acttcctgga tgcgacgctg gctctgcccg
     1141 gtcagctcct gcacttgcag gagctgttgc tggaccgacg acatgctcga cgtcatgtcg
     1201 gagcggaatc gcgtgagacg cgtactcagc gcattcagcg agtcgttcgc ggtgcgcatg
     1261 ctcgtcaatg cgcgatcgat ctggatcttc cgggcggagt cggcagcgag ctgctcacca
     1321 cgcatcgtgc ggatatcgct ctgcagcacc tgcacgtccg attgtgttgc gaagcagccg
     1381 gcgaacaaca tcgccaacgg cgtcgcgaga atcatctttc tcactgactg gctcctccag
     1441 atgtcggcgc gaactcggac cgacggttgc gcgaccatgc ttcctcgttt tcaccctgaa
     1501 ccgcgggctg ctcagctccc atgctcgtga tctcgagccg gctcgcgtct atgccgttgt
     1561 tgaccaggaa cgccttcgct tcggcggcac gccggaggcc aagtgcgagg ttgtattctg
     1621 acgagccacg atcgtcggtg tgtcctgtta tgcgcaggtg gatcgttggt tgcgcctgca
     1681 gtaccggaac cttggcgaga agcagcgagc gcgctgcctc ggtgaggtca gccttgtcga
     1741 aatcgtagta gatggtagcg ccgaggactt tcgccgcgtc ggcgttctgt gccgcctcac
     1801 gctgctcacg ctcgcgcacg gcacgcagac tgtcctgttc agcttgtgct cttgcgagct
     1861 cggcctggcg tgcagcgttc gcgcgtgcaa tggagtctgc gcgcgcgcga tccagcgagt
     1921 cgttccctga aacaggggac ggtgtgagcg cggcgggagc cttgtggcag gcggcgacga
     1981 gtgtcaacgc aacgagtgcg actacgagtt tgcttggatg cattgtcgcg aggggttagg
     2041 gtttgaggat cggcgaccac gcggccaacc gcgcgccggc ggcgtgagtc agctgacgca
     2101 tacggcctga ctcggcatcg agcacccaca actgacgtgg tcccgtacgc gtcgacgaga
     2161 ataccatgtg acgcgagtcc ggtgcccacg caggatcttc gttctggccg tcgctggtgt
     2221 actgcttggt cgagcgatcc cgcatgtcga tcgtcatgat ctgaaaattg ccgtcgattc
     2281 gcgactcgta tgcgatccgt cgaccgtccg gcgcccagtc cggcgacgcg cgatacgcct
     2341 gctcgccata tgtgaactcg gtgagcaatg aaggattcgt tccgtcagca tccattgtat
     2401 aaacctccgg atgtcccgcg cgtcccgaca tgaaagcaat ctgccgtccg tccggactga
     2461 aagcgggcga cgtattgtcg cttccccgtc caaccgtgat ccgtcgcgaa ggcgatgcgt
     2521 cgccctcctg catgagcatg atgtcagtgc cgccttcact tccgctggcg tacgcgatgg
     2581 ttcgtccgtc cggcgaatag gtgggcgtga tgttcaggcc gcgcgcggtt ccgctcaacc
     2641 agtgcatgtc accggttacg aaactgtaca ccgcgatctg cgagccgctc ggcgtaaatc
     2701 cgcagaagac gaatttggtt gcgtcgggac tccatgcagc cgacatcgca agtgtcaccg
     2761 aagtgagctt gcgcgcgttc tcaccgtcgc tgtcgatcac ccagatctgt ttgtctccgc
     2821 cgctgaacaa gattcgcgtc gcagctgcac ccggagtgcc gaagatccag cgttccacct
     2881 cgtcgctcgc acgatgcaca gccattcgcc atgccggcga gttgacctga tcggtgagcg
     2941 gaaagccgcc aatctgaatt cgctttttgg ccgccacgtc gtacatcgtg atcgtgatgc
     3001 cagtcaacga gggctgcgga cgcaggatgg caacgacgcc gagcttggcg aagagcggat
     3061 aattgaagtt gtcgcccgtc tttggcatca tcgcgcgcgc cgacgtgtcg tcgagcgcaa
     3121 tgacggtcgc ccggtcgtcg tagtcgatgt cgcgctgaag tatcgcgcgc acggaatcgc
     3181 cgcctgcgga gtccattggc agcacgagca cgcccggttt cgtgccaagc gtgtagttga
     3241 ggccaaggcg gacgccttcc ggcaccgtcg gattctgggc gcgaaccgta gccggcgcca
     3301 gcgcgagcgc cgtgctggcg accgctgcaa taagtatttg tctgagttgc atcactgcag
     3361 gaaacgagga tcgaagctga aaactacggg gagaacatca tcccggaaac cgtccgggag
     3421 cggtccgaat gacgacgaag ctcgttcgat cgcgccctga gcctccagat cgaacgaata
     3481 aactccagat cgattgacga atttcacgtc cgtgacgctg ccatcccggt gaatcagaaa
     3541 tgacatggtc gcgctcaatg gcgaattcgg gttcttgata cggaagttca gcgcgatctg
     3601 ccgaacgatg ttgttgagat acccggggaa tggaaagtcg atgccggcgg tctgtacggt
     3661 cgcgacatcg gttccccggc cacctgtggg gccgccgccg gcctttggag ccttggtcgc
     3721 cggtgccgga gccttctttg gcggcgcttc tacgggtgta gcccgggtcg ttggcgtcgg
     3781 cggcgccttg gttggggctg gtggcaccga agacggcgtt tcacgcatct tgggcggcgt
     3841 cggtgctgga tt
//
LOCUS       DATIMD010000259         2679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4429511, whole genome shotgun sequence.
ACCESSION   DATIMD010000259 DATIMD010000000
VERSION     DATIMD010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4429511"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..506
                     /locus_tag="VLI40_06045"
     CDS             <1..506
                     /locus_tag="VLI40_06045"
                     /inference="COORDINATES: protein motif:HMM:NF024937.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4126 family protein"
                     /protein_id="HSU96772.1"
                     /translation="GIDMPLHSELFFCVSAFLLGIVAGMRSMMAPAVLALTLSRRPEY
                     VPNTAPAHWFALVPIAVILVISALGELVADKLPRTPNRTALGPFVVRVASGAITGAAL
                     VQIGGINAWAGAACGAVGAIVGTFGMFHARRFADRVTGIRDPYIGAVEDVLAIAIAAS
                     VVAQLVR"
     gene            complement(539..1396)
                     /locus_tag="VLI40_06050"
     CDS             complement(539..1396)
                     /locus_tag="VLI40_06050"
                     /inference="COORDINATES: protein motif:HMM:NF014951.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96773.1"
                     /translation="MNIAFVTSAAHQDLTPDDQLAVAQLEKRGARVTGAIWNDPSVDW
                     MRFDSVIVRSTWDYHHRSVEFRSWIDARGAAGVPMWNPPAVLRWNMEKTYLRDLENAG
                     VPIVPTEWLLKGTKPDLGELLAERGWLDAVVKPVISAAATRTWRVSHATALDVDVQLT
                     ESLGTGDVMVQPFVPEIQTRGEWSLMFIDGDFSHAVRKMPTEGDFRVQTGFGGRSITD
                     HPDAQVIRAAQRVLDVAPSPWLYARVDGIETDAGFVLLELEMLEPALFFAHTESGAER
                     FAEAIIARM"
     gene            1583..>2679
                     /locus_tag="VLI40_06055"
     CDS             1583..>2679
                     /locus_tag="VLI40_06055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HSU96774.1"
                     /translation="MKRIALVVAAALASVVPQLASAQSAQDVARWQKEAQSVTITRDD
                     WGIAHVRGRTDADAVFGMIYAQAEDDFNRVETNYLNSMGRLAEAEGEPAIYQDLRMKL
                     FIDPDSMKTLYASSPEWLKKLMNSWADGLNYYMYKHPDVKPRAITHYEPWMALSFSEG
                     SIGGDIERVNLKQLQAFYGGGPVTAEPTTSGVLPPPEPGGSNGMAVAPFNTKDHHALL
                     LINPHTSFFFRSELQMTSDEGLNAYGAVTWGQFFVYQGFNTRVGWMHTSSAVNAVSEF
                     LETVEKRGDRFYYKYGNEERPMVTKTITVPYKTASGMASKTFTAYYTLHGPVIRKTDG
                     RWVTIELMQRPQIALIQSYMRTKAMNYKQYE"
BASE COUNT          554 a          825 c          808 g          492 t
ORIGIN      
        1 caggtatcga catgccgctc cattccgaat tgttcttctg tgtctccgcg ttcctgttgg
       61 gaatcgtagc cgggatgcgt agcatgatgg cgcccgcggt actcgcgctg acgctgtctc
      121 gcaggccgga atacgtgccc aacactgcgc cggcgcactg gtttgccctc gtccccatcg
      181 ccgtcatact tgtcatatcg gcgcttggcg agctcgtcgc tgacaagttg ccacgaacgc
      241 ccaaccgtac cgcccttggc cccttcgtgg tccgcgtcgc atccggcgcg atcacaggcg
      301 ccgcactggt gcagattggc ggaatcaacg catgggccgg cgcggcgtgc ggcgccgtgg
      361 gcgcgatcgt gggaacgttc ggaatgtttc acgcacgccg cttcgccgac cgcgttacag
      421 gaatcaggga tccgtacatc ggcgcggtcg aagacgttct cgcgatcgcg attgccgcga
      481 gcgtcgtcgc gcagctggtc cgatgatggc gctgacgatg gcggtgacga tcggcgcctt
      541 acatacgagc gattatggcc tctgcgaaac gctcggcgcc ggactcggtg tgcgcgaaga
      601 acagtgcggg ctccagcatc tccagctcca gcagcacgaa gccggcgtcg gtttctatcc
      661 catccacgcg cgcatacagc cacggtgatg gcgcgacgtc cagtacgcgt tgcgcggcac
      721 gtatcacctg agcgtccggg tggtcggtga tcgaccggcc gccgaatccg gtctgaacgc
      781 gaaaatctcc ttccgtcggc atcttacgca ctgcatgact gaagtcaccg tcgatgaaca
      841 tcagcgacca ttcgccgcgc gtctgaatct ccggcacgaa cggctgcacc atcacatcac
      901 cggtgccgag cgattcggta agctgcacat cgacgtcgag cgccgtggca tgcgatacac
      961 gccaggtgcg ggtcgccgcc gccgagatca cgggcttcac caccgcatcc agccagccgc
     1021 gctcagcgag caattcgccg aggtccggct ttgtaccttt aaggagccat tcggtgggaa
     1081 ctatcggtac gcccgcgttc tccaggtccc ggagataggt cttctccatg ttccaacgga
     1141 gcaccgctgg cggattccac atcggaacac ccgcggctcc gcgtgcatcg atccaggacc
     1201 gaaactccac cgagcgatga tggtaatccc aggtcgagcg aacgatcacg gagtcgaatc
     1261 gcatccagtc gaccgacggg tcgttccaga tcgcgcccgt gacccgcgca ccacgctttt
     1321 ccagttgagc gaccgcgagc tggtcatccg gagtcaggtc ctgatgcgcg gctgaagtta
     1381 cgaatgcaat gttcacgaga caatgatttc atgatgcagc cccaggaaca agtggcaggt
     1441 acaagtggca ggaacaagtg cgaagtgcgc gcggattgtc catattttac gcggacgaaa
     1501 tcaccgcggc tcgcgcggcc gttttcagca tcggtatatc gacggaacct tggcaaaaat
     1561 catcgctgga tctgaggcag gaatgaagag aatcgctctc gtagtggctg cagcattggc
     1621 atcggtcgtc ccacagctcg ccagcgccca gagcgctcag gacgtcgcac gctggcagaa
     1681 ggaggcgcag agcgtcacga ttaccaggga tgactgggga atcgcgcacg tccgcggcag
     1741 gaccgacgcc gacgccgttt ttggaatgat ctacgcccag gcggaggacg acttcaatcg
     1801 cgtcgagacc aactatctca actcgatggg acgtctcgcc gaagcggaag gcgagccggc
     1861 gatctatcag gaccttcgca tgaagctttt catcgatccc gattcgatga agacgctgta
     1921 cgcgtccagt cccgagtggc tcaagaagct gatgaattcc tgggccgacg gtctcaacta
     1981 ctacatgtac aagcatcccg acgtcaaacc gcgcgccatc acgcactacg agccgtggat
     2041 ggcactctcg ttcagcgaag gtagcatcgg cggcgacatc gagcgtgtga acctcaaaca
     2101 gttgcaggca ttctacggtg gcgggccggt gaccgctgag ccgacgacgt caggcgtgct
     2161 gccaccgccc gagccaggcg gctcgaacgg aatggcggtc gctccgttca atacaaagga
     2221 tcaccacgca ttgttgctga tcaacccgca cacatcgttc ttcttccgct ccgaattgca
     2281 gatgacgagc gatgagggac tcaacgcgta cggcgctgtg acgtggggtc agttcttcgt
     2341 gtatcagggc ttcaatacgc gtgtcggatg gatgcacacc tccagcgcag tgaacgcggt
     2401 gtcggagttt ctcgagacgg tcgagaagag gggcgaccgc ttctactaca agtatggaaa
     2461 cgaggagcgg ccgatggtga cgaagacgat cacagtgcca tacaagacgg cgagcggaat
     2521 ggccagcaag acgttcaccg cctactacac gctccacggt cccgttatcc ggaagaccga
     2581 cggcagatgg gtaacgatcg agctcatgca gcgtccgcag atcgcgctca tccagtcgta
     2641 catgcgcacc aaggcgatga attacaagca gtacgagaa
//
LOCUS       DATIMD010000260         1939 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4722983, whole genome shotgun sequence.
ACCESSION   DATIMD010000260 DATIMD010000000
VERSION     DATIMD010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4722983"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(231..812)
                     /locus_tag="VLI40_06060"
     CDS             complement(231..812)
                     /locus_tag="VLI40_06060"
                     /inference="COORDINATES: protein motif:HMM:NF016154.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YetF domain-containing protein"
                     /protein_id="HSU96775.1"
                     /translation="MFFHSWGDIGRVVVVSIVTFFAIVAMLRLVGQIALAKMSGYDVI
                     FTVTLGSLVATVVLTRTLTVSEALAAFVTLLALQMGIRWLQARWLVVHHAVREPPNVV
                     LWDGQLLEDRMRRSSISGDEVRAAVRKRGLSSLNDVRAVVLENDGDWSVIPKSADESD
                     ESAFFGLPIPGRPGNSPARGAEHAVPTTPYRLP"
     gene            complement(934..>1939)
                     /locus_tag="VLI40_06065"
     CDS             complement(934..>1939)
                     /locus_tag="VLI40_06065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96776.1"
                     /translation="DLAAAERAARRWLQLQPDLPVAWALMADILDYSGRYDAGLDANH
                     RAVMLSGNDPSYEIRTARALIAGRRIGAADSLLSQIHSTSNEIHNSINDVRILALRER
                     GEWSRSNAAIEAYLAKQPDDDGFLLEEMDGLGRLGDYAAAAHLFDTRIAPRIAPAIGS
                     VPQRPRGDAARAFSWTRALEANAIAGSGDTVRLHAIADSMRIIGGASYLERDRHLYHH
                     VLGLIAMQGNRYAEAEAEFQAARWGAAGWTQTVAWEARAQLAQNKSRNAIATLRQAYE
                     GPLDAMGRYEPHSELDMIMATAFRQAGVRDSAAVYDGYVRSVRGNGAGRDSLRAAPVS
                     "
BASE COUNT          368 a          633 c          600 g          338 t
ORIGIN      
        1 gcgcgacgcc gagcgacatg gacacatcgc ggatgaccaa tggtccaagc gaagcgcgcg
       61 ggcgagcgcg aagcgaaaaa gctaggtagg ccgcggatgc attcgcgcct gtgactggcc
      121 ccgccggtcg ccgccgacag ccatcacggg tcaccggcca acgtaacctg cgatgcgccc
      181 tcaatatggt ttgcaataca agtcgcacca agactcgcgc cgcaccgccg tcatggaaga
      241 cggtacggcg tagtcggtac cgcgtgttcc gctccccgcg cggggctgtt gccggggcgg
      301 ccagggatcg gtaatccgaa aaaagcggac tcatcgcttt cgtcggccga tttgggaatc
      361 accgaccagt cgccatcgtt ttcgagaaca acggcacgaa cgtcgttgag agagctcagt
      421 cccctcttgc gaaccgcggc gcggacctcg tcaccactga tgctgcttcg gcgcatgcgg
      481 tcttccagca attgaccatc ccacagcaca acgttcggcg gctcgcgtac ggcgtgatgg
      541 acgacaagcc agcgcgcctg aagccagcgt atgcccatct gaagcgccag cagtgtcacg
      601 aacgcggcga gcgcctcgct cacggtcaac gtacgcgtca ggaccacggt tgcgacgagg
      661 gagccgagtg tgaccgtgaa gatcacgtcg tagccggaca tcttcgccaa cgctatctgg
      721 cccaccagtc gaagcatcgc cacgatcgcg aagaacgtga cgatcgagac gacgaccacg
      781 cggccgatgt cgccccacga atggaagaac atgctcgaca tcgcatgcaa tcggtgcgcc
      841 gtgccggcct gtcacatcgg tgcggtggtg gcacgatcga acctgtcgca ttgtggagcg
      901 acggctatca catcatccaa cggcgtacgc cgtctacgag acgggagccg cccggagtga
      961 atcccgccct gcaccattcc cccgtacgct ccggacgtag ccgtcataca cggcagcact
     1021 gtctcgcact ccagcctgcc gaaacgccgt cgccatgatc atgtcgagct cgctgtgtgg
     1081 ctcgtaccga cccatcgcat cgagtggtcc ctcgtacgcc tggcgcagtg tggcgatcgc
     1141 gttccgggac ttgttctgcg cgagttgcgc acgcgcttcc catgcgaccg tctgcgtcca
     1201 tccggcagcg ccccaccgcg cggcctgaaa ttccgcctcg gcctccgcat accgatttcc
     1261 ctgcatggca atgaggccga gtacgtggtg atagagatgt ctgtcgcgct cgagataact
     1321 cgctccaccg atgatgcgca tggaatcggc gatcgcgtgg agacgaaccg tgtcgcccga
     1381 tccggcgatc gcgtttgcct cgagtgcgcg cgtccagctg aaggcgcgag ccgcgtcacc
     1441 gcgtggacgt tgaggcacag agccgatcgc cggcgcgata cgaggtgcga tacgcgtgtc
     1501 gaacaggtgc gccgccgcgg cataatcacc caatctgccg agtccgtcca tttcctccag
     1561 cagaaacccg tcgtcgtcag gctgtttcgc gagatatgcc tcgatggcgg cgttcgaccg
     1621 gctccattcg ccgcgctcgc gcagcgccag gattctcaca tcgttgatgc tgttatgaat
     1681 ctcattgctg gtggaatgta tctgcgacag gagcgagtcg gcggcgccaa tccggcgtcc
     1741 agcgatgagt gcacgtgcgg tgcgaatctc gtaagacgga tcgttgccgc tgagcataac
     1801 ggctcgatgg ttcgcgtcga gaccggcgtc gtagcgacct gagtagtcga ggatatcagc
     1861 catgagcgcc caggctaccg gaagatcggg ttgcagttgc agccaccgac gcgcggctcg
     1921 ctccgcggcc gcgagatct
//
LOCUS       DATIMD010000261         2482 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2409686, whole genome shotgun sequence.
ACCESSION   DATIMD010000261 DATIMD010000000
VERSION     DATIMD010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2409686"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..501
                     /locus_tag="VLI40_06070"
     CDS             <1..501
                     /locus_tag="VLI40_06070"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSU96777.1"
                     /translation="EEGELGSAYFALHPTVPQAQLVADLNTDMYFPIIPFTGLFSYGW
                     DESDLGKDIMPVLKAHGIANLEDPEPEQVRFIRSDQYSFIQRGIPSLAFKVGYTKGSP
                     EMKVVTDWVANRYHKPSDDLAQPIDFKTAVSFDSLYFDIVRAVADRETRPAWYKQSVF
                     ASIPRP"
     gene            630..1406
                     /locus_tag="VLI40_06075"
     CDS             630..1406
                     /locus_tag="VLI40_06075"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031012 - extracellular matrix [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HSU96778.1"
                     /translation="MGVARVLALIAGFQTAMVSCVGSAIAPRDALIVAISSQSGGRVA
                     LRTDSSVACASGAAASDMTAPRSALHAVGSERRQFAPRWRDDEARAVTVRIDAPMALA
                     AWNPAFRSEIAAALQAWETAGSPVRFALVSGGDADIHVHWIDKFDGHYEGWTTVSWND
                     TGWLINGDVTLALRSPKGQLLTAGEREQVAMHEIGHVLGLSHSSSSASIMSPTVHVNA
                     IAPQDIATLRSLYMSPDGSSVVRSIAQGGASTERCPESRL"
     gene            1515..>2482
                     /locus_tag="VLI40_06080"
     CDS             1515..>2482
                     /locus_tag="VLI40_06080"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSU96779.1"
                     /translation="MLDTPPAPVWDEVLEETVSLLSRMIQTDTTNPPGNELALGRYIA
                     SVLEGAGIQTLLVEPTPGRAAVIGRIRGTGPARAVLLLAHMDVVAADPAGWTVPPFGG
                     TVHDGYVYGRGAIDDKGMLAANLMTMLLLQRAIARTGIPLTRDVVFVATPDEEGPGEW
                     GIGWLATHHPDLLSAEFAINEGGRIRVVDGRPLYAAVQTAEKVANLVTVTAHGTGGHA
                     AIPVPDNAVALLCKAVARIAAHREPFRLLPTTSEFFQQLSQVWPNRAEARAMRDLASR
                     EVVRSARAAARLARVPAFGAVLRTGISPTVLAGGSAHNVIPETASAT"
BASE COUNT          463 a          775 c          800 g          444 t
ORIGIN      
        1 gaagagggcg agctcgggtc cgcgtacttc gcgctgcatc cgaccgtacc tcaagcccag
       61 ctcgtggcag acctgaatac agacatgtat ttcccgatca taccgttcac cggactgttc
      121 tcgtacggat gggacgaatc cgaccttggc aaggacatca tgccggtgtt gaaggcgcac
      181 ggcatcgcca acctcgagga tccggagcct gagcaggtcc gcttcatccg aagcgatcag
      241 tacagcttca tccagcgcgg aattccatcg ctggccttca aggtcggcta caccaagggt
      301 tcgccggaga tgaaggtcgt gacagattgg gtcgctaatc gctaccacaa gccatccgat
      361 gacctcgcgc aaccgatcga tttcaaaaca gcggtgtcgt tcgactcgct ttactttgac
      421 atcgtgcgcg ccgtagccga tcgcgagacg cggcccgcgt ggtacaaaca gagcgttttc
      481 gcgtcaattc cacggccgta gccctggtgc gcgaatatac ggaacaatgc acatgcgttt
      541 cgtgttcaat ccgcagccga atacacccaa accaatagca tcgaaaaagg gaactgttac
      601 cgccacatga gtctgctcgt caaatattga tgggtgtagc acgagttctt gccttgattg
      661 cgggattcca gacagcgatg gtgagctgtg ttggaagtgc aatcgcaccg cgcgacgcat
      721 tgatcgtcgc tatctcgagc cagtcgggcg ggcgcgtcgc gctacgtacc gactcttctg
      781 tcgcttgcgc gtcaggcgca gccgcttcgg acatgaccgc gccgcggtcg gcgttacatg
      841 ccgttggaag tgagcggcgg caatttgctc cccggtggcg tgacgacgag gctcgcgccg
      901 tgacggtcag aatcgacgca ccgatggcac tggccgcatg gaaccccgct ttccgcagcg
      961 aaatcgcggc agcacttcag gcatgggaaa ccgccggctc gccggtcagg ttcgcgctcg
     1021 tttctggcgg cgacgccgac atccacgtcc actggatcga caagttcgac ggccactacg
     1081 agggctggac tacggtctcc tggaacgata cggggtggct catcaacggc gacgtgaccc
     1141 tggcgctccg cagccctaaa ggccagctgc tgacggcagg cgagcgggag caggtcgcga
     1201 tgcacgagat cggacacgtt ctgggcctca gccacagcag cagctccgcg tcgataatgt
     1261 cgccaacggt tcacgtgaac gcgatcgctc cacaggacat agcgacgctc agatcgctgt
     1321 acatgtcgcc cgacggctcg tcagtcgtgc ggtccattgc gcagggcggc gcttcgaccg
     1381 agagatgccc ggagagcagg ctctagggcg gattcccgtt cggttcaggg catagctttt
     1441 gagtcacggg cacggcgggt gaacagtact ccgccgtaac ttcccggctc aaacagttat
     1501 tcacacaggt actcatgctc gatacgccgc cggctccggt ctgggatgag gtgctggagg
     1561 agaccgtcag tctcctgagc cggatgatcc agacggacac gaccaatcct ccgggaaacg
     1621 agctcgcgct tggccgctac atcgcatccg tactggaggg tgcaggcatt cagacgctcc
     1681 tggtcgagcc gacgcccggg cgcgcggcgg tgattggccg gattcgcgga acggggccag
     1741 cgcgggctgt ccttctgctt gcgcacatgg atgtcgtcgc ggccgaccca gccggctgga
     1801 ccgttccccc gttcggcgga acggtccacg acggatacgt ctacgggcgc ggcgcgatcg
     1861 acgacaaggg gatgctcgcc gcgaacctga tgaccatgct gctgttgcaa cgcgccatcg
     1921 cgcgcaccgg aattccgctc acgcgcgacg ttgtgttcgt cgcgacgccg gacgaggaag
     1981 gcccgggaga atgggggatc ggctggcttg cgacgcatca tcccgatctg ttgagcgcag
     2041 agttcgcgat caacgaagga gggcgcatcc gcgtggtcga cggccggccg ttgtacgccg
     2101 ccgtccagac cgcggagaaa gtggcgaacc tcgttacggt cacagcgcac ggaaccggcg
     2161 gccacgcggc gatccctgtt cccgacaatg cggtggcgct gctctgcaag gcggtcgcgc
     2221 ggatcgcggc gcaccgcgag ccgttccggt tgttgccgac cacgagcgag ttctttcagc
     2281 agctgagcca ggtgtggccg aaccgcgcgg aggcgcgtgc gatgcgtgat ctcgcgtcgc
     2341 gcgaagtcgt tcggtcggct cgcgcagcgg cgcgactcgc gcgggtaccc gcgttcggcg
     2401 cagtactgcg aacgggtatc tcgcctacgg tcctggccgg aggcagtgcg cacaacgtga
     2461 ttcccgaaac ggcgtcagcg ac
//
LOCUS       DATIMD010000262         2629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5012115, whole genome shotgun sequence.
ACCESSION   DATIMD010000262 DATIMD010000000
VERSION     DATIMD010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5012115"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..1179
                     /gene="rlmN"
                     /locus_tag="VLI40_06085"
     CDS             100..1179
                     /gene="rlmN"
                     /locus_tag="VLI40_06085"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: protein motif:HMM:TIGR00048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HSU96780.1"
                     /translation="MSKINLLNLTPADADATLEAFFRDRGEPLYRARQVARRLWQAPV
                     RSFADITELPVPLREALEQSFELPELAVATQQTSADGTRKFLFRLADGEAIETVSIPD
                     ADRLTLCISSQAGCALQCAFCATGKMGFTRNLEPYEIACQVREMALLDPPIAVTNIVF
                     MGMGEPLMNWRAVSSALTILNDPAGLGIGARHITVSTVGILPGIVALAERPEQFRLAI
                     SIHAPTDELRRSLMPINTKYPLAEVIDAAKSFDRRVTFEYVMLGGVNDRDEDARELTR
                     LAHECKAFVNLIPLHPGGAGDFTPTTADSIRRFAAMLRRGGLSVAIRKSRGKDIAAAC
                     GQLRVERHRRRRPVAAEHDGGVEVA"
     gene            complement(1108..1539)
                     /locus_tag="VLI40_06090"
     CDS             complement(1108..1539)
                     /locus_tag="VLI40_06090"
                     /inference="COORDINATES: protein motif:HMM:NF024791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytR C-terminal domain-containing protein"
                     /protein_id="HSU96781.1"
                     /translation="MVRRSVLLAAAMLLAIAGCRRGDRHSGVSSRASSTGMDTTVGHA
                     PPGVRIKVEVLNASAIHGAARRATLLLRARGYDVVAMGTSRTTQAPTLVLDRSNHPEW
                     AALIGKAIGGKVVARPDTSRYLDATVVLGSDWTPPPMPFYP"
     gene            complement(1539..2081)
                     /locus_tag="VLI40_06095"
     CDS             complement(1539..2081)
                     /locus_tag="VLI40_06095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96782.1"
                     /translation="MHSATLDLPDWARVSDKRAEHIQRVTALLNAWAAAMRLPPAETR
                     AFIDAGVLHDALRDASEAELRTITGDDHTPPGLLHGPAAAITLEKHGGKRADVLEAIR
                     YHTVGNAHWGVVGRALYMADFLEPGRKFMRQDRYFLSLHVPTSFDAVFRQVVRMRLEW
                     TVREGNNIFPETVALWNSLQ"
     gene            complement(2084..>2629)
                     /locus_tag="VLI40_06100"
     CDS             complement(2084..>2629)
                     /locus_tag="VLI40_06100"
                     /inference="COORDINATES: protein motif:HMM:NF014611.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HSU96783.1"
                     /translation="DGAGSRTTVTPPSFATLFEGAVRPGHFTGVLTVVAKLFNIVQPD
                     VAVFGRKDLQQLSLIRGMVSDLNYAVQVIAVDTVRESDGLALSSRNRYLDADARRHAP
                     ALRAALLAGKSAFDAGTTDPSAIESVGKAVLAKDGAFDVDYLSVVNEADFANPAVATH
                     GNSIIVAARIGGTRLIDNIRL"
BASE COUNT          487 a          845 c          819 g          478 t
ORIGIN      
        1 gcgggaatcc atgaagtatg attgcatgta gaccggttaa atttatgtct ggcaatggct
       61 tatggtaggg cccttcgcac cgttgcccgc cgatcccaca tgtccaaaat caatcttctg
      121 aatctcacgc ccgcggacgc cgatgcgacc ctcgaggcgt tctttcgcga ccggggcgag
      181 ccactgtacc gtgctcgtca ggtcgcgcgc aggctttggc aggcgccagt gcgctcgttt
      241 gcagatataa ccgagctccc ggtaccgcta cgcgaagcac tcgaacagtc gttcgaactt
      301 ccggagctcg ctgttgcgac ccagcaaacg tcggccgacg gaactcgcaa gttcctattt
      361 cggctcgccg atggcgaggc catagaaacc gtgtcaattc cggatgccga tcgactgacg
      421 ctctgcatct cgtcccaggc ggggtgcgcg ctccagtgcg ctttctgcgc gactggcaag
      481 atgggcttca cgcgcaacct cgagccttac gagatcgctt gccaggtgcg tgagatggca
      541 ttgctggacc cgccgatcgc ggtaacgaac atcgtcttca tggggatggg tgagccgctc
      601 atgaactggc gcgccgtcag ctccgcgctg acgatcctca atgatccggc cgggctcgga
      661 attggtgcgc gtcacatcac cgtttccacg gttggaattc tcccgggcat cgtcgcgctc
      721 gccgagcggc cggaacagtt tcggcttgcg atctcgattc atgcgccgac ggatgagttg
      781 cgccggagtc tcatgccgat caacaccaag tatccgctcg cggaagtgat cgatgctgca
      841 aagagcttcg accggcgcgt cacgttcgag tacgtcatgc tcggtggtgt caacgaccgc
      901 gacgaggacg cgcgcgagct gacgcggctc gcgcacgagt gcaaggcgtt cgtgaatctg
      961 attccgctgc atccgggcgg tgccggcgat ttcactccca cgaccgcgga ctcgatacgg
     1021 cggtttgcgg caatgctgcg acgcggtggg ctcagcgtcg cgatccgcaa gagccggggc
     1081 aaggacatcg ccgcggcgtg cggacagcta cgggtagaac ggcatcggag gcggcgtcca
     1141 gtcgctgccg agcacgacgg tggcgtcgag gtagcgtgac gtgtcggggc gagcaacgac
     1201 cttgccgccg atcgccttcc cgatgagcgc cgcccactcg gggtgattgg atcggtccag
     1261 cacgagcgtc ggagcctgcg tcgtgcgtga agtccccatt gcgacaacgt cgtagccgcg
     1321 tgcacgcagc agcagcgtcg cacgtcgcgc tgcaccgtga atcgcgctcg cgttcagaac
     1381 ttcgaccttg atacgcacgc cgggcggcgc gtggcccacg gtggtatcca tcccggtcga
     1441 cgatgccctg gacgacacgc cgctgtgtcg atcgcctctc ctgcagcctg cgatcgcaag
     1501 tagcatggcg gccgcaagca atacggaacg tcgcaccatt actgcaggct gttccagagc
     1561 gcgaccgttt cggggaagat gttgtttccc tcacgtacag tccattcgag ccgcatccgg
     1621 accacctgcc ggaaaaccgc gtcgaacgac gtgggcacgt gcagcgagag aaagtatctg
     1681 tcctgcctca tgaactttct gccaggctcc agaaaatccg ccatgtacaa cgcgcggcca
     1741 acgacgcccc agtgcgcgtt gccgacggtg tggtagcgaa tcgcctcgag aacatcggcg
     1801 cgcttcccac cgtgcttctc gagcgtgatc gccgccgccg gcccatgcag caatcccggc
     1861 ggcgtatgat catcaccggt aatcgtgcgc agctccgcct ccgacgcgtc gcgcaacgcg
     1921 tcgtgcagca cgccggcgtc tatgaacgcg cgcgtctcgg cgggaggaag ccgcatcgcc
     1981 gccgcccacg cattcagtag cgcggtgacg cgttggatgt gctcggcgcg cttgtcgctg
     2041 acacgcgccc aatcaggaag atccagcgta gcgctgtgca ttgtcagagt cggatgttgt
     2101 cgatcaatcg tgtgccaccg atccgcgccg caacaattat cgagttgccg tgcgtggcga
     2161 cggccggatt cgcgaaatca gcttcgttca ccacggatag ataatcgacg tcgaacgcgc
     2221 catccttcgc caggaccgct ttcccgacgg actcgatggc cgatggatcg gtggtgccag
     2281 catcgaacgc gcttttacca gcgaggaggg ctgcacgcag cgcgggcgca tgacgcctcg
     2341 cgtcagcatc gagatagcgg ttccggctgg aaagcgccag cccgtcgctc tcccgaacgg
     2401 tgtcgacagc gattacctgc accgcatagt tcaggtcgga aaccatgcca cggatcagcg
     2461 acaactgctg caggtccttg cgcccgaaca ccgcgacgtc aggctgcacg atattgaaaa
     2521 gcttcgcgac caccgtcagc acgccggtaa agtgtccggg acgaacggca ccctcgaaca
     2581 acgttgcaaa cgacggcggt gtaacggtag tgcgagaccc ggcgccgtc
//
LOCUS       DATIMD010000263         1767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2410000, whole genome shotgun sequence.
ACCESSION   DATIMD010000263 DATIMD010000000
VERSION     DATIMD010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1767
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2410000"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1161)
                     /locus_tag="VLI40_06105"
     CDS             complement(<1..1161)
                     /locus_tag="VLI40_06105"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU96784.1"
                     /translation="MSGRTIPAPINIPVPLIFRLRAVLAAVVMLPAQTRAQQPTDSVH
                     TVTLTEALAMAAHVNPALAAGKAAVTTARSNRRIVTGEYLPSLGVASSAGRGTTVQGA
                     SSVTNGIPVSSTVRPLDDLYGAGISAAIPVFTGGRRGAERRSADAQQVAADAGLSATE
                     YDVRLATKQAYFDVLRASELMDVATAQVTQAQLAMRDADSRLRAGTTTRSDVLRARVA
                     LAAARDALATAGSQKTASQFALARTIGSDVPVDAAQVADDDSLPLSVSRDSLVRNAVT
                     GAPVARAATAAAQSADAAITAARAQYLPTVLASGGYGWMEQRSVDPRPVGGWTMQLGI
                     SYPLFNGFQRGATVTRAEAAATAAHSAAVDTERGVRADAVKAYDDATVAAQRI"
     gene            1312..>1767
                     /locus_tag="VLI40_06110"
     CDS             1312..>1767
                     /locus_tag="VLI40_06110"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSU96785.1"
                     /translation="MSVLAMTGLVAIGSFAAGMLGALTGLGGGMIIVPMLTLVFGVDI
                     RYAIGASLISVIATSSGAAAAYVREGYTNIRIGMFLEVATTVGALSGAYIAGLISTSA
                     IAVIFSLVLAYSAYRSFQPREEHSIDGPPDRWATRLRMDGTYPTPQGLQP"
BASE COUNT          288 a          578 c          569 g          332 t
ORIGIN      
        1 gattctctgc gccgcgactg tcgcatcatc gtaggccttt accgcgtccg cgcgcacgcc
       61 acgctcggtg tcgaccgcgg ccgaatgcgc cgcggttgcc gcagcctcgg cgcgcgtcac
      121 tgttgcaccg cgctgaaacc cgttgaacag cggataggaa attcccagtt gcatcgtcca
      181 tccaccaacc gggcgcgggt cgaccgagcg ttgctccatc catccgtagc cgccgctcgc
      241 aagaaccgtc ggcagatact gtgcgcgcgc cgctgtgatg gctgcgtcgg cggactgcgc
      301 cgcggccgtc gcagcgcgcg caaccggtgc cccggtcacc gcattccgca ctagcgaatc
      361 acgcgacacg gaaagcggca gcgaatcgtc atctgccacc tgagcggcat ctaccggtac
      421 atcgctcccg atggtgcggg ccaacgcaaa ctggctggcg gttttctgcg acccggccgt
      481 cgccagcgcg tcgcgcgccg cggcgagtgc gactcgtgcc cggagcacat ccgaccgtgt
      541 cgtcgtcccg gctctcaatc ggctgtcggc gtcccgcatc gccagttgcg cctgtgtgac
      601 ctgtgccgtg gcgacatcca tcagctcgct cgctctcagc acgtcgaagt aagcttgctt
      661 ggtcgcgagc cgcacgtcgt attcggtggc gctcagacct gcatcggcgg cgacctgttg
      721 tgcgtccgcg ctccgacgct cggcgcctcg tcgtccgccc gtgaagacgg gaattgccgc
      781 cgagatcccc gcgccgtaga gatcgtcgag tgggcggacg gtcgacgaaa ccggaatacc
      841 attcgtgacg ctactggccc cttgaacagt cgttccacgg cccgcactgg atgcaacgcc
      901 gagtgatggg aggtactcgc cggtcacgat gcgccggttg gagcgggcgg tcgtgaccgc
      961 cgccttcccg gcagcgagtg ccggattgac gtgcgcggcc atcgcgagcg cctcggtcag
     1021 tgttacagtg tgaacagagt cggtcggctg ctgagcgcgc gtctgcgcgg gtaacatcac
     1081 gaccgcagcg agaaccgcgc gcagcctgaa gataagtgga accggaatgt tgattggagc
     1141 tgggatggta cgacctgaca tcaactctat actggcgggt gtccgcagga cagatacgcc
     1201 ctgatcccgc cgcttgttgc gtgaggccgg taatgggcgc cggtgatagg cgccggtggc
     1261 gtctgaagcc gcgattggct aagctacgcg ttccatgacg ctgcgtttcc aatgagtgtc
     1321 ctcgcaatga cagggctggt tgcgatcggt tccttcgcgg ccggcatgct cggcgcactt
     1381 acagggctcg gcggcggcat gatcatcgtg ccgatgctca cgctggtgtt cggggtcgat
     1441 atcaggtatg cgatcggtgc gtcactgatt tccgtgatcg cgacttcgtc cggcgcagct
     1501 gccgcctacg tccgcgaagg ctacaccaat atccgaatcg ggatgtttct ggaggtcgcg
     1561 accaccgtcg gcgcgctttc gggagcttac atcgcaggac tcatctcgac gagcgcaata
     1621 gcagtcatct tttcgctcgt cctcgcatac tcggcttacc ggtcgtttca gccacgggaa
     1681 gaacattcca tcgatggacc gccggacagg tgggcgacgc ggctcagaat ggacgggacc
     1741 tatcccactc cgcagggact tcagccg
//
LOCUS       DATIMD010000264        11187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3853382, whole genome shotgun sequence.
ACCESSION   DATIMD010000264 DATIMD010000000
VERSION     DATIMD010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 11187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11187
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3853382"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..854)
                     /locus_tag="VLI40_06115"
     CDS             complement(<1..854)
                     /locus_tag="VLI40_06115"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HSU96786.1"
                     /translation="MADSTEWPSYGRDFSNQRFSPLTQINTRNVGQLAPAWVYHTGIV
                     SGFETSPVVVGGVMYISTPLNHVVALDAATGAKKWEYTHDYRTTTDCCGPINRGVTVY
                     GGRVYMGTVDARLVALDAATGKKLWDVQVGDNEKGYHITSAPLAVDGKIITGISCGEQ
                     GGRCYVTAYDASSGKQVWRFYTIPSPADGGWWGKWRATDAWGLSFGRDIAKEKADSAK
                     YPDSWKRGGAPMWHVPLVDTKLGLVYLNVGNAAPDLDGSERPGDNLYSDCMVALDLKT
                     GKLRWYFQA"
     gene            complement(1073..1417)
                     /locus_tag="VLI40_06120"
     CDS             complement(1073..1417)
                     /locus_tag="VLI40_06120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S) ferredoxin domain-containing protein"
                     /protein_id="HSU96787.1"
                     /translation="MEPYSRHVIICTGGYCSPERRGRSLYTLLASLLQREGLLFGPDR
                     VKRGETPCLGVCEGGPIVVVYPEGVWYAGVTPQLLERIVVEHLKGGHVVEEAVFHRVA
                     PVDGSGDSSGSR"
     gene            1479..2357
                     /locus_tag="VLI40_06125"
     CDS             1479..2357
                     /locus_tag="VLI40_06125"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HSU96788.1"
                     /translation="MSEVDPVIAVKRYAHPEALVSTEWLAERLGDDSIRILECDEDVL
                     LYEVAHIPGAQKLDWHTDLNDPVVRDYVNREQFQELLRSRGIDESKTVVLYGDKNNWW
                     AAYALWVFKLFGFESVRLLDGGRAKWEAEGRPMTTERPSFPRTSYDAPPRSDEKIRAF
                     ATDALAQSKAAKPLVDVRSPQEFTGERTHMPDYPQEGTLRGGHIPGARSVPWARAANS
                     DSTFKSAADLRAIYEREQGLGASDEIITYCRIGERSAHTWFVLTYLLGYPNVRNYDGS
                     WTEWGNTVRAPIEVGS"
     gene            2354..2791
                     /locus_tag="VLI40_06130"
     CDS             2354..2791
                     /locus_tag="VLI40_06130"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HSU96789.1"
                     /translation="MSGTIPAEVNVVWAGEGQFDGGRPGGPTIHLDSSARTGPSMVDT
                     LLCALASCVSVDVVDILAKRRTPVTSLAVNVKAERVDGTPRRLARATLNFEISGAGIE
                     RVHAERAIDLAVNKYCSVRDSLREDIPVDWTLSLAGETEPAVA"
     gene            2852..3532
                     /gene="bioD"
                     /locus_tag="VLI40_06135"
     CDS             2852..3532
                     /gene="bioD"
                     /locus_tag="VLI40_06135"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HSU96790.1"
                     /translation="MTRIGVVGTDSGVGKTVVASAIIAAMREAGARVAPMKPVGRRGS
                     GDIEQMLSACGISYPMPLVQPVAFDDAATPLVSSRRAHTRVDIEMVDRAFAELCTMSD
                     AVVVEESGGLLAPITEGESFATLFRRWGLDIVIVSPNGVGSVSQVLMNLQIIRQHGMR
                     VRAVVLTTLSRARGGTAERTNQALLKELLLTVPVVSFPYVDSPGDPRHLMALARELSA
                     SPTIARPA"
     gene            3663..4106
                     /locus_tag="VLI40_06140"
     CDS             3663..4106
                     /locus_tag="VLI40_06140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96791.1"
                     /translation="MSLVILLFAIAYAVIVFAIGVVPLNMFLHKMFGASMMPRLWQNA
                     MIRLAERTAVAAVACWLALAISGRIRGHLTGKGMLAVGAAMSGALAGAVDVGLQKLWT
                     TDLVKAAHAGLMWGVALSCAITAVVAIVVTLLFITRSTKLVATAS"
     gene            complement(4195..5532)
                     /locus_tag="VLI40_06145"
     CDS             complement(4195..5532)
                     /locus_tag="VLI40_06145"
                     /inference="COORDINATES: protein motif:HMM:TIGR02913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96792.1"
                     /translation="MSITPNLPTCPARIRGPRGTAFAIVAAVIVTAIGACSDAPTSLS
                     TASAASPSASAGSPGGTTPSNYTVVDLGTLGGPFSIAFDVNNVGRVVGSALTSDGLQH
                     AARWSQGTAMDLGTLGGLNSQASGRAENPDLAILSDTRDNDPLGEDFCALHSGQICRA
                     ALWHDGVLTELPTLGGINSAALEINGRGEIVGAAEDGTLDATCVAPQRSHFQAVVWGA
                     NGEIHKLPPLPGDEVGLALKNNDRGQVVGTSGMCSNTIFAGFALGPHAVLWDHGSPIN
                     LGNLGAPENVNVAADINNSGTVVGGASFPDGSTHPFMWTKATGIRDLGLMSADPADAA
                     NTPFSINDRGQMVGGSCDVTLATCRAYIWQNGVMTDLNDLVPADAPLYLISPFGINSD
                     GTITGLAIVKSTGEAHAFLAVPVSGKSDDGAVHVQHASHRMSLPASARMLLRH"
     gene            5715..6344
                     /locus_tag="VLI40_06150"
     CDS             5715..6344
                     /locus_tag="VLI40_06150"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type sigma factor"
                     /protein_id="HSU96793.1"
                     /translation="MAEQADATANEAAEQEAAAALAMLRRGAPDGMDRLIPLVYAELR
                     RVAHRQLAVEPAGHTLSTTALVHEAYLRIADQTRAEWTNRAQFFGLAARAMRRVLVDY
                     ARRHQAARRGGSQQQPVALEDAEASAEASADALTVAARGDELLALDEALERLSALDAR
                     LGRVVECRFFGGLTEAETAETLGVSQRTVAGDWLMAKGWLYQALRTESE"
     gene            6341..8761
                     /locus_tag="VLI40_06155"
     CDS             6341..8761
                     /locus_tag="VLI40_06155"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU96794.1"
                     /translation="MTTPERWARIRAGTEALLATPPDARAAFLLHAFGDDESLRAEVE
                     AQAEACELAARSPDFLAQPATSFAAPMLADAAAGMAPDESSGLTTEESTEAALRAALA
                     GHYDLERQLGRGGTATVYLARDHRHGRLVALKVLDPALGAAMSAERFLREIRVTAGLT
                     HPHILPLHDSGSAGDLLYYVMPYIDGETLRERLAGGRQLPLDAARRLVREVASALAYA
                     HRRGVVHRDIKPANILLEDGHAVVADFGIARAVRRAQEPQEAATPGSSTHHPDSDGTN
                     TLTQAGVSPGTPAYMAPEQARGNADVDHRADIYALGVVAYEALAGVHPFSERAPQAMA
                     AAHASEIPVSLFTHRPDVPPALAALVMQALEKDPAARPQSATDIVAMLDRAPSVAERL
                     GTQKRHRIIRWNVTRITAVAIALIAAGGALAVRSWTGGRGSAAPGPATAVARNSTPTS
                     GASVADAGQRGTSDPEAYELYLKGHYYWTQRGAANLTRSIAYFQQAIARDSLFARAHA
                     GLAFAYSSLPVFPPDSADSTKLTSMSGDRAAELANASAERAARLDPTLADAQLALGIA
                     LDMRARFREALACYRTAVALDPSSVTAHHWLGMSLLNLGRTDEAIVELRHATELDPLA
                     PVPAAAIGTALLFARRFTEAEAASRRALAHDSTVGFAIYTLGLAQAFGGQPDSAVRTL
                     VRGARLAPDDAHIASALVFAYAAAGNWDDAARMRDHLHRRWGNRSGWADAAVADMVFG
                     DKEPLMRVVMSTAGQRRFAQTGGIFGCNPLFDPLRTDVRFVAAMRDMGVAACPLGRRW
                     PLPVHART"
     gene            8721..9203
                     /locus_tag="VLI40_06160"
     CDS             8721..9203
                     /locus_tag="VLI40_06160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96795.1"
                     /translation="MADDGLSQCTPERESEYAPTKITRAHPRRCCRASAEFLLGDMAL
                     ILTQGHVLCTIASRNSTRQQEGAMPRGDKSAYTDKQKRQAEHIEQGYESRGVPEKESE
                     RRAWATENAISHGGRKAGGSGRGKSENREPERKGGHSESHAERSRAAKKGWETRRHGH
                     "
     gene            complement(9243..10202)
                     /gene="rsgA"
                     /locus_tag="VLI40_06165"
     CDS             complement(9243..10202)
                     /gene="rsgA"
                     /locus_tag="VLI40_06165"
                     /inference="COORDINATES: protein motif:HMM:TIGR00157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HSU96796.1"
                     /translation="MTAAPGTMEVPSHLGRVLSGTGGVWQVRTSTGEMRDASLRGRLK
                     LESESGVKLSVGDNVRVIEGERGAGWMITEILPRTSQLARREPGGRAGERVVVANLDQ
                     VIVVFAAANPEPHPRMLDRFLVIAEANSLAARVVINKTDLSDEKEIRARFADYDAAGY
                     PVHLTSAIRQTGLTELHAVFDGKTSALSGPSGVGKSSLMNSLYPGLNLRVGAISESVN
                     KGRHTTVGAVMHPLPAGGYVADTPGLREVGVWGLDPVDLPDCFPEFRPFIHECRFGNC
                     SHLSEPGCAVTAAVAAGTVSAARYDSYSRLRVELEETEKRWSK"
     gene            complement(10220..10597)
                     /locus_tag="VLI40_06170"
     CDS             complement(10220..10597)
                     /locus_tag="VLI40_06170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96797.1"
                     /translation="MGRFLPADHDAGDANTVGGYRAVHSRPAAFEGKDGASYSVDIVV
                     DEVRDPRGRFGAYLLFVHWRRGDPVAAGHLETDYIAFGETEDDARAALGAMRLSDAKQ
                     ALDELITRAETPTRPWYDVMRDS"
     gene            complement(10616..>11187)
                     /locus_tag="VLI40_06175"
     CDS             complement(10616..>11187)
                     /locus_tag="VLI40_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HSU96798.1"
                     /translation="YGSFVRLDMEASNYTQKTLELFENRLYPEFRGTVGVVLQSYLYR
                     TQADVEHMNTLGARVRICKGAYKEPASVAFPEKRDVDANYITCMQSLLLHGTYPGIAT
                     HDEVIIEKVKQFARENDIKPDRFEFQMLYGVRRDLQEKIVREGWRMRCYVPFGTQWYP
                     YLMRRLAERPANVAFMTGNILKEMVRGRR"
BASE COUNT         2089 a         3574 c         3514 g         2010 t
ORIGIN      
        1 gcctggaagt accagcgcag ctttcccgtc ttgagatcga gcgcgaccat gcaatcggag
       61 tacagattgt cgcccggacg ttcggagccg tccagatccg gcgccgcgtt gccaacgttc
      121 aggtagacca ggccgagttt cgtatcgacc agcggtacgt gccacatcgg cgcaccgccg
      181 cgtttccatg aatcgggata tttggcgctg tctgcctttt cctttgcgat gtctcgcccg
      241 aacgacaggc cccaggcatc cgtcgcgcgc cactttcccc accagccacc gtccgcggga
      301 gaaggaatcg tatagaatcg ccagacctgc ttgccggagc ttgcatcata cgcagtgacg
      361 tagcaccggc cgccctgctc accgcagctt attccggtga tgatcttgcc gtccacggca
      421 agcggcgcag aggtgatgtg gtaacccttc tcgttgtcac cgacctgaac gtcccacagt
      481 ttctttccgg ttgccgcatc gagcgcgacg agtcgcgcat cgacggtgcc catgtagacg
      541 cggccaccgt aaaccgtgac accgcgattg atcggaccgc aacagtcggt cgtggttctg
      601 tagtcgtgcg tgtactccca cttcttcgcg cccgtcgcgg cgtcgagcgc gacgacgtga
      661 ttgagcggag tcgagatgta catcacaccg ccaacgacta cgggactggt ctcgaaaccg
      721 gaaacgattc ctgtgtgata gacccacgcc ggcgcgagct gtccgacgtt gcgcgtgttg
      781 atctgtgtga gtggggagaa gcgctggttg ctgaaatccc gtccgtagga tggccattcg
      841 gtgctgtctg ccatcgctct ctgcagatcg ctgtcggctc gcgcgacgtc cacgctgccg
      901 cgcgcagctg tggcgccact cgcgctactt gtcttgcgat tgcacgcagc taatgaaatc
      961 gtggcgcaga caagtagtgg ggcagcgcac agtcgcattg ctgcgagcgt cgcgcgacct
     1021 ctgcctttca tgtcgttcag tcattggcag agcgcgtgcc acacgtgtta catcaacgcg
     1081 atccagacga gtcacccgac ccgtcgacag gcgcaacgcg atggaagact gcttcctcca
     1141 cgacgtgacc acccttgaga tgctccacta ctattcgctc gagaagctgg ggagtcacgc
     1201 cggcgtacca cacgccttcg ggatagacaa cgactatcgg cccgccctcg cacactccaa
     1261 ggcacggagt ctcgccgcgt tttacgcgat ctggtccaaa caacaatcct tcgcgctgaa
     1321 gcaacgacgc gagcagcgtg tacaacgagc ggccgcgccg ctccggcgag caatacccac
     1381 cggtgcagat gatgacgtgg cgcgaatacg gttccatcgg ccttggtaac ggtgccatat
     1441 tcatctataa taaccgcccc caacaaactg atgtttttat gagcgaagtc gaccccgtaa
     1501 tcgccgtcaa gagatacgca catccggaag cgctcgtgag cactgaatgg ctcgccgaac
     1561 gactcggtga tgattccatc cgcatactcg agtgcgacga agatgtgctg ctgtacgaag
     1621 tcgcacacat tcccggcgcg cagaaactcg actggcatac cgacctcaac gatccggtgg
     1681 ttcgcgatta cgtgaatcgc gaacagttcc aggagctgct tcgctcgcgc ggaatcgacg
     1741 aatcgaaaac cgtcgtgctc tacggagaca agaacaactg gtgggctgca tacgcgttgt
     1801 gggtgttcaa gctgttcggc ttcgagagcg tgcggttgct ggatggcgga cgcgccaagt
     1861 gggaagccga aggccggccg atgaccaccg agcgcccgtc gttcccgcgc acgtcgtacg
     1921 acgcaccacc gcgatcagac gaaaagatcc gcgcgttcgc cacggatgcg ctcgcgcaat
     1981 cgaaagccgc gaagccgctg gtcgacgtgc gaagccctca ggaattcacg ggcgagcgga
     2041 cccacatgcc tgactatccg caggaaggaa cgctccgcgg cggtcacatt ccgggcgcgc
     2101 gctcggtgcc gtgggcacgt gccgccaaca gcgactcgac tttcaaatct gctgcggatc
     2161 tgcgcgcgat ctacgagcgc gagcagggcc tcggtgcgtc ggacgaaatc atcacttact
     2221 gccgcatcgg cgagcgctcc gcgcacacct ggttcgtcct cacctacctg ctcggctatc
     2281 ccaacgtcag aaactacgac ggatcgtgga ccgaatgggg caacaccgta cgcgcaccga
     2341 tcgaggtcgg ctcatgagcg gaacgatacc ggcggaagtg aacgtcgtct gggcgggcga
     2401 aggacaattc gatggcggcc gcccgggcgg tccaaccata catctcgact catcggccag
     2461 aacggggccc agcatggtgg atacactgct gtgcgcgctc gccagttgcg tgtcggtgga
     2521 cgtggtggac attcttgcca agcggaggac acctgtaacc tctctcgccg tgaacgtgaa
     2581 ggctgagcgg gtggatggca cgccgcggcg actcgcacgc gccacgctca attttgagat
     2641 ttccggcgct ggaatcgagc gcgttcacgc ggagcgcgca atcgacctcg ccgtcaacaa
     2701 gtactgttcg gttcgggatt cgctccgaga ggacatcccc gtagactgga cgctgtcgct
     2761 ggctggcgag accgagccag ctgtcgccta gaagacccga tcggatcaat caacaacaca
     2821 gacccggact cgatccatca ccggaatagc gttgactcga atcggcgtcg tcggcacgga
     2881 tagcggcgtc ggcaaaacgg tggtggcctc cgcgatcatc gcggcgatgc gagaggccgg
     2941 agctcgggtc gcgcccatga agccggtcgg ccgacgcgga tcgggcgaca tcgagcagat
     3001 gctgagcgcg tgcggcatca gctatcccat gccgctcgtg caacccgttg ccttcgacga
     3061 cgcggcaacg ccgctggtct cctcccgcag agctcacacc cgcgtggaca tcgagatggt
     3121 cgatcgcgca ttcgccgagc tttgcacgat gagtgacgcg gtggtagtcg aggagtcggg
     3181 cggactgctg gcgccgatca ccgaaggcga gagcttcgct actctgttca ggcgatgggg
     3241 actcgacatc gtgatcgtgt cgccgaatgg cgttggctcg gtcagtcagg ttctcatgaa
     3301 tctccagata attcgccagc atgggatgcg tgtccgagct gtggttctga cgacgctctc
     3361 gagagcgcgc ggcggcaccg ccgaacgcac caatcaggca ctgttgaagg aattactgct
     3421 caccgttcct gtggtgagct tcccgtatgt cgactcgccc ggggatccgc gacatctcat
     3481 ggcgctggcg cgcgagctct ctgccagtcc tacgatagcg cgtccggcct gacggcccgc
     3541 cggagggcag cgccgatggg tgccggtgac cgatcggcac gtttcgcagt ctttctatca
     3601 tgacgtccag cacagattca agaggccacc tctacgccct gcccacgccc cgggtgattc
     3661 gggtgtcact cgtcatactg ctcttcgcga tcgcctacgc tgtgatcgtg tttgcgatag
     3721 gcgtcgtccc gctcaacatg ttccttcaca agatgttcgg ggcgagcatg atgcccaggc
     3781 tctggcagaa cgcgatgatc cgtcttgcgg aacggacagc ggttgccgca gtcgcgtgct
     3841 ggctcgcact ggcgatctcg ggcagaatcc gcggccatct gaccggaaag gggatgctcg
     3901 cggttggcgc cgcgatgtct ggcgcacttg ccggcgcggt ggacgttggg ttgcagaagc
     3961 tctggacgac cgatcttgta aaggcggccc acgccgggct catgtgggga gttgcgctgt
     4021 cgtgcgcgat cactgccgtc gttgcgatcg tcgttacgct gctgttcatc acgcgcagca
     4081 cgaagttggt ggcaacagcg agctagtcgc ccactcgcct tgcgagtccg caacagttga
     4141 ggagtcgggt ggcggcgctt cgtgcaccac caccctctgc ttcagccgca tggcctagtg
     4201 tcgcaacagc attcgcgcgg aggcaggaag agacatgcga tggctcgcat gttgaacgtg
     4261 cacagcacca tcgtcggact tacccgacac gggaactgcc aggaaggcgt gtgcctcgcc
     4321 ggtgctcttc acgatcgcca accctgtgat cgttccatca ctgttgatac cgaacggtga
     4381 tatcagatac agtggagcat ctgccggaac gaggtcattg aggtccgtca tcacaccgtt
     4441 ctgccagatg taggcccggc atgtcgcgag tgtgacgtcg cacgacccgc cgaccatctg
     4501 tccacggtcg ttgatcgaga acggagtatt cgccgcatcg gccggatctg cgctcatcag
     4561 accgaggtcg cgtatgccgg ttgccttcgt ccacatgaag gggtgtgttg atccgtcggg
     4621 aaagctcgcc ccaccaacga ccgtcccact gttgttgatg tccgctgcga cattcacatt
     4681 ctccggcgcc cccagattgc cgaggttgat cggcgagccg tgatcccaga ggacggcgtg
     4741 cggtccgagg gcgaagccag cgaagatggt gttcgagcac atccccgacg tcccgaccac
     4801 ctggcccctg tcgttgttct tgagggcaag cccaacctcg tcgccgggga gtggcgggag
     4861 cttgtgaatc tcaccgttag cgccccagac cacagcctgg aaatggctcc tctgcggcgc
     4921 aacgcatgtc gcatcgaggg tcccgtcctc tgcggcgccg acgatctcac ctcgaccatt
     4981 gatctcgagt gccgcggaat tgatgccgcc cagagttgga agttctgtga gcactccatc
     5041 atgccatagc gccgcgcgac agatctgacc gctgtgaagc gcgcaaaaat cctcgccaag
     5101 tggatcgttg tcgcgcgtgt ccgagaggat cgcgagatcc gggttctcgg ctcgcccgct
     5161 cgcctgactg ttcagccctc caagagtgcc gaggtccatc gcggttccct gagaccagcg
     5221 ggcggcatgc tgcagtccat cggaggtgag agcggaaccg accactcgcc ccacattgtt
     5281 cacgtcgaag gcgatactga acgggccacc cagcgtcccg agatcgacga cggtgtaatt
     5341 cgatggcgtc gttcctccgg gggagcctgc cgaggcagac ggcgacgcgg ctgaagcagt
     5401 tgacagggaa gtcggagcgt cagagcacgc tccgattgcc gtcacgatga ccgccgcgac
     5461 aatcgcgaac gccgtaccgc gcgggcctct gatacgagca ggacatgtgg gaagatttgg
     5521 tgtgatgctc atggggatct cctgggctat ggttgaggcg ggctcccggg ccaaaacggg
     5581 gatcgtcgca cgccgcattg ccgcgcggat cgttcactcg tatcttggcc gaagcgttgg
     5641 ggccgcatag caaacgcgta gaatccagcg aaaagacgca aacgccttta cgcagcatcg
     5701 tccgaggtgc ggagatggcc gagcaggcag acgcgacagc caacgaggcg gctgagcagg
     5761 aggcagccgc agcgctcgcc atgcttcgcc gcggcgcacc ggatggaatg gaccggctca
     5821 tcccactcgt ctacgccgag ctgcgccgcg tcgcgcaccg ccagctcgcg gtcgagccgg
     5881 ccggtcacac cctttcaacg acagcgctcg ttcacgaggc gtatctacgc atcgctgatc
     5941 aaacgcgtgc cgagtggacg aatcgtgcac agttcttcgg tctggccgcg cgagcgatgc
     6001 gacgagtgct tgtcgattac gcacgccgac atcaggccgc ccgccgcggc ggatcacaac
     6061 agcagccagt tgcgttggag gatgcggagg caagtgcgga ggcaagtgct gacgcactca
     6121 ccgtagcggc gcgcggcgat gagttgctcg cgctcgacga ggcgctcgag cgcctttcgg
     6181 cgctcgatgc caggctcggt cgtgttgtgg aatgccgctt cttcggcggt cttacggagg
     6241 cagaaactgc cgagacgctc ggagtctctc agcgcacggt ggcgggcgat tggctgatgg
     6301 cgaaggggtg gctgtatcag gcgcttcgca cggaaagcga gtgaccacgc ctgagcgctg
     6361 ggcgcggatt cgcgccggca cggaggcgct tctggcaaca ccccccgacg ccagagcggc
     6421 ctttcttctg cacgcattcg gtgacgacga atctctgcgg gccgaggttg aagcacaggc
     6481 ggaggcgtgc gagctcgctg cgcggtcacc ggacttcctg gcgcaaccgg cgacatcttt
     6541 cgctgcgccg atgctggccg atgcggcggc cggtatggca cccgacgaat catccgggct
     6601 gacgacggaa gaatcgaccg aagcagcgct tcgagcggcg ctagcgggac actacgacct
     6661 cgagcggcaa cttgggcgtg gtgggaccgc aaccgtctat ctggcccgtg atcacagaca
     6721 tggacgactg gttgcgctca aggttctcga cccggcgctc ggcgccgcga tgagtgccga
     6781 gcgctttctg cgagagatcc gtgtcaccgc agggctcaca catccgcaca tcctcccgtt
     6841 acatgattcc ggatcggctg gggatctgtt gtactacgtg atgccgtaca tcgatggtga
     6901 gacactgcgc gaacgactcg cgggcggacg ccagctccca cttgacgcgg cgcggcggct
     6961 agtgcgtgag gttgcgagcg cactcgcgta tgcacaccgc cgcggcgtgg tgcatcgcga
     7021 catcaagccc gcgaatatcc tgctggaaga tggacatgcg gtcgtcgccg atttcggcat
     7081 cgcgcgcgca gtgcgtcgcg cccaggaacc gcaggaagcg gcgacgccgg gatcttcgac
     7141 ccaccatcca gacagcgacg gcacgaacac cctaacgcag gccggcgtgt cacccggcac
     7201 tccagcctac atggcaccgg agcaggcccg tggcaacgcc gacgtggatc atcgcgccga
     7261 catttacgcg ctcggcgtcg tcgcatacga agcgctggcc ggcgtgcacc ctttctcgga
     7321 gcgagcacca caagcgatgg cagccgcgca cgcgagcgag attccggtat cactctttac
     7381 gcatcgtcct gatgtgccgc cagcgctcgc cgcgctcgtg atgcaagcac tcgagaagga
     7441 tcccgccgcg cgtccgcaat cagcgaccga tatcgtggcg atgctggacc gagcgccgag
     7501 cgtcgcggag cggcttggta cacagaagcg acaccgcatc atcaggtgga acgtaacgcg
     7561 cattaccgcc gttgcgatcg cattgatcgc agccggcggt gcgctcgctg tgagatcgtg
     7621 gacagggggg cgcgggtcgg cggcgccggg tccggcgaca gcggtagcgc gcaattccac
     7681 tccaacttcc ggtgcttcgg tcgcggacgc cggacaacgc ggcacatccg acccggaggc
     7741 gtacgaactg tacctgaagg gtcattacta ctggacccaa cgcggcgctg ccaacctcac
     7801 ccgatccatc gcttacttcc agcaggccat tgcgcgcgac tctctgttcg cacgcgcgca
     7861 cgccggcctc gcgttcgctt acagcagcct gccggtcttt ccgcctgact cggcagattc
     7921 gacgaaactg acaagcatga gcggtgatcg tgcggcggag ctggcgaacg ctagtgcgga
     7981 acgcgccgcg cggctcgacc ccactctcgc ggacgcgcag cttgcgttgg ggatcgcgct
     8041 cgacatgcgc gcccgattcc gcgaggcgct ggcctgctac cgtacagcgg ttgcgctcga
     8101 tccgtcatcc gttacggcgc accattggct tggcatgagc ctcctgaacc tcggccgcac
     8161 cgacgaggcg atcgtcgagc tgcgacacgc gacggaactc gacccgctcg cgccagtgcc
     8221 ggctgcggca atcggcaccg ctcttctttt cgcgcgacgg ttcaccgaag ccgaagctgc
     8281 gtcgcgtcgc gcgctcgcgc atgactccac ggtcgggttc gccatttaca cacttggtct
     8341 cgcacaggca tttggagggc agcccgacag cgcggtgcgc actctcgtgc gtggcgcacg
     8401 cctcgccccg gacgacgcac atatcgcctc ggctctggtg tttgcgtatg ccgcggccgg
     8461 caactgggat gacgcggcgc gaatgcgaga ccaccttcac cgccgctggg gcaatcgctc
     8521 aggatgggct gatgcggcgg tcgcggacat ggtattcgga gacaaggagc cgctcatgcg
     8581 cgtggtgatg agcacggccg gccaacgccg ctttgcgcag acgggtggaa tattcggctg
     8641 caatcctctg ttcgacccac tccggaccga tgtgcgcttc gtcgccgcaa tgcgcgatat
     8701 gggagtggca gcgtgcccgc ttggcagacg atggcctctc ccagtgcacg cccgaacgtg
     8761 agagcgagta cgcgccgacg aagatcacgc gcgcacatcc gcggcgttgc tgtcgcgcat
     8821 cggctgaatt tctgctcggc gacatggcgt tgatactcac acaggggcat gtgttatgca
     8881 cgattgcatc ccgcaactcc acacgccaac aggagggcgc gatgccacga ggcgacaagt
     8941 ctgcatacac agacaagcag aaaagacagg ccgagcacat cgaacaggga tatgaatcac
     9001 gcggcgttcc cgagaaggag tcggagcgcc gcgcgtgggc tacggaaaac gcgataagcc
     9061 acggcggaag aaaggccggt ggatccggac gcggcaagag tgagaatcgc gagccggagc
     9121 gcaagggcgg tcactccgag agtcacgcgg agagaagcag ggccgcaaag aagggttggg
     9181 agacgcgcag gcacgggcac tgacccgcgc aggaaattcg cctgccgggg ttattcgacg
     9241 cgctacttgc tccagcgctt ttccgtctcc tcgagctcca ctcgcagtct cgagtaacta
     9301 tcgtatctgg ctgcgctcac cgttccggcc gcaaccgccg cggtgactgc gcagccaggc
     9361 tccgatagat gtgaacagtt cccgaagcga cattcgtgga tgaatggccg aaattcgggg
     9421 aagcagtccg gcaggtccac gggatccagc ccccacactc ccacttcacg cagtcctggc
     9481 gtgtccgcga cgtaaccacc ggccggaagc ggatgcatta ccgctcccac cgtcgtatga
     9541 cgtcccttgt tcacggattc gctgatcgcg ccgacccgaa gattgaggcc gggatacaac
     9601 gaattcatca gcgacgactt gccgaccccg gacggtccgc tcagcgcact cgtctttccg
     9661 tcgaacacgg cgtgtagctc cgtcaatcca gtctgcctga tggcgctggt gagatgaacc
     9721 gggtagccgg cggcatcgta gtcggcgaag cgcgcgcgga tctctttctc gtctgacagg
     9781 tcggtcttgt tgatcaccac gcgcgcggcg agcgagttcg cttcagcgat caccaggaag
     9841 cgatccagca ttcgcgggtg cggctcgggg ttggccgcgg cgaatacgac gatcacctga
     9901 tccagattcg caacgacaac gcgctcgccc gcgcgtccgc caggctcacg ccgagcgagc
     9961 tgcgaggtac gcggaaggat ctcggtgatc atccacccgg cgccacgctc gccttcgatg
    10021 accctgacgt tgtcacccac cgacagcttc acccctgact cgctctcgag cttgaggcgg
    10081 ccgcgcaacg acgcatcccg catctcgccg gtgctcgtac gcacctgcca tacgccgccg
    10141 gtgccggaca ggacgcgtcc gaggtgggac ggcacttcca tggttccagg tgccgctgtc
    10201 aaatcttttc gtgtccccgt cacgaatccc gcatgacgtc gtaccacggc cgagtcggcg
    10261 tctccgcacg tgtgatcaac tcatcgagtg cctgcttcgc atcgctcaat cgcatggcac
    10321 cgagcgccgc gcgagcgtcg tcctcggtct cgccgaacgc gatgtaatcg gtctcgagat
    10381 ggccagcggc gacaggatcg ccgcgccgcc agtgcacgaa cagcagatag gcaccgaagc
    10441 gtccgcgcgg atcgcgaact tcatcgacga cgatgtcgac gctgtacgag gcgccgtcct
    10501 tgccttcgaa cgcggccggt cgcgaatgca ccgcgcggta gccgccaaca gtgttggcat
    10561 caccggcgtc gtggtcggca ggaagaaatc ggcccatctg gggctcagtg gcggctcaac
    10621 gtcggccgcg caccatctcc ttgagaatgt tgccggtcat gaacgcgacg ttggcgggac
    10681 gctcggcgag gcggcgcata agataaggat accactgtgt tccgaacgga acatagcagc
    10741 gcatgcgcca tccctcacga acgatcttct cctgaagatc ccggcgaacg ccgtacagca
    10801 tctgaaactc gaagcgatcc ggcttgatgt cgttctcacg tgcgaactgc ttcaccttct
    10861 cgattatgac ttcatcgtgg gttgcgatac cgggataggt accgtgcagg agcagactct
    10921 gcatgcaagt gatgtagttg gcgtccacat cgcgcttttc aggaaacgca acgctcgccg
    10981 gctccttgta ggcgcccttg catatgcgaa cgcgtgcgcc gagcgtattc atatgctcga
    11041 catcggcctg agtgcgatag agatagctct gcagcacgac tccgacagta ccgcggaatt
    11101 ccggatagag gcgattctcg aacagctcga gcgtcttctg cgtgtagttg ctcgcttcca
    11161 tgtcgagcct gacgaagctg ccgtact
//
LOCUS       DATIMD010000265         6184 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5012510, whole genome shotgun sequence.
ACCESSION   DATIMD010000265 DATIMD010000000
VERSION     DATIMD010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6184
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5012510"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..573)
                     /locus_tag="VLI40_06180"
     CDS             complement(<1..573)
                     /locus_tag="VLI40_06180"
                     /inference="COORDINATES: protein motif:HMM:NF017835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcvB/VirJ family lysyl-phosphatidylglycerol
                     hydrolase"
                     /protein_id="HSU96799.1"
                     /translation="MIAHSQQASHRDRASTRDRASLLAATVLALALTACPSAKPPYVP
                     RDPVLRALPLYFYPASDSAKAVVIFFGNDIGFWDAHDRLARQLASNGYTVIGVDIKKY
                     IDRLPEPYASREAAFDSSIDGVIARAVREMRATSLPLVLGGHSFGADLALWTAAHAPP
                     PHTVGVLALAPTARSHFYVTATDRANISEPD"
     gene            complement(570..2843)
                     /gene="priA"
                     /locus_tag="VLI40_06185"
     CDS             complement(570..2843)
                     /gene="priA"
                     /locus_tag="VLI40_06185"
                     /inference="COORDINATES: protein motif:HMM:TIGR00595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005658 - alpha DNA polymerase:primase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HSU96800.1"
                     /translation="MTDQARRLVEVALPVPLFQTFVYSLDGEYEHEARVGSRVLVPFR
                     KRQEIGIVVALDAAPPARGVVKAVSAVPDAEPALDDGLLALSGWISEYYVVPLGVVMR
                     TVLPALLTGAAQPHPSVKTRRVVRIRDDIPTLLQREKAFVRAPQQRALFELIESLGGA
                     TSVEHLLEQLKFSPSVLKALEKRALISIDRERVERDPFATRVGRNEPRHDPTAEQLAA
                     IGRMETARPGEVFLLHGVTGSGKTLVYIELLREIVERRGKTAIVLVPEIALTPQTVDR
                     FRAVFGDDVAVLHSALSDGERYDAWLALKRGEKRIAVGARSAVFAPLTNIGAIIVDEE
                     HESSYKQGETPRYHAREAAIVRATQEGAIVVLGSATPSLESWTNAVADKFTLLSLPDR
                     VGGATLPSVAVVDLRKAVIDPAATAGEDDYQRVVTGPLDAAIRARLDRGEQSILLLNR
                     RGYSAFVQCENCGNVATCPNCSITLTYHRSPERLVCHYCMHQEEPQRVCKRCGGATLQ
                     RRGLGTQQVERLICERFASARVARMDVDTTSGKWAHAEILDRVGAGEVDILLGTQMIA
                     KGLDFPNVTLVGVIDADVGINLPDFRASERCFQLLSQVAGRAGRGARGGEVLIQTRVP
                     SHHAVKCAVTHDYMSFVTEELSGRVQPVYPPNNRLANIVFSGSIESGVADLAIAGAAW
                     LRRLIRARESVGLTVIGPAPCAVERIKTRWRWHVLLKSEHPHELTRVGRYFLERFAVP
                     ARDGLRVTFDRDPVTLL"
     gene            complement(2840..3865)
                     /locus_tag="VLI40_06190"
     CDS             complement(2840..3865)
                     /locus_tag="VLI40_06190"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide epimerase"
                     /protein_id="HSU96801.1"
                     /translation="MQLTWERVSLRTTLPFVIARWGYAGHENVIVTITDDGVTGNGEA
                     APNRYYGESPDSVCAALERYRPIVESAQSWSLEATDAALATALRGNASARAAVSSAMH
                     DLHARKAGLPLHKLWGLSADAVPLSSFTIAIDDVDGLRRRVHDAAQYPILKIKLGTDR
                     DEEIVRTVREAAPDKVLRVDANAAWSPQQAIERAAMLRDNAVESVEQPVAAADIDGMR
                     FVRERCGLPVIADESCLVAADVPRLAGACDAINIKLAKCGSLREAVRLVHVARAHNLG
                     VMAGCMIETSLGISAIAQIAPLLDAADFDGAALLAEDPFDGVTISDGQVRLVDSPGLG
                     VTRRRPE"
     gene            complement(3876..4883)
                     /locus_tag="VLI40_06195"
                     /pseudo
     CDS             complement(3876..4883)
                     /locus_tag="VLI40_06195"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
     gene            complement(4884..5264)
                     /locus_tag="VLI40_06200"
     CDS             complement(4884..5264)
                     /locus_tag="VLI40_06200"
                     /inference="COORDINATES: protein motif:HMM:NF018129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031411 - gas vesicle [Evidence IEA];
                     GO_process: GO:0031412 - gas vesicle organization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GvpL/GvpF family gas vesicle protein"
                     /protein_id="HSU96802.1"
                     /translation="MASASGRTGLRLYGVIDVDTGDKKLLDEQSVQLVTYRDLAAVVA
                     VAPYVRSEPTDADLSDYLRVVDAFSEKGTIVPAPPGTIFRDESVLARWLDVHYAKLHE
                     AMAMIEQRDGDQPPYDYVRMEFGG"
     gene            complement(5257..6078)
                     /locus_tag="VLI40_06205"
     CDS             complement(5257..6078)
                     /locus_tag="VLI40_06205"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSU96803.1"
                     /translation="MPEGNRTTPAPAVLRLVQMAIIDRWRATGEDLYREVARLADLEK
                     GQDIVVSGCGRGVTTEWLALRTGASVTGVDPDDEDITQAEEHARDTGLGLSYQHAKLD
                     DLPYENGVFDAAIGEPEIAAAASTGKAVAELARVTKPMGSVVLLQLTWSSELSESRRE
                     LVVERLGLRPRMVVEWKQMLREAGVVDIQVKDWTNECDDELAADGEGASPRLNWQAKM
                     QIMGRALRRSGWAEARQALVRETELLRDLSRERSMNFSIIKGVKWPHAMPAMAHG"
BASE COUNT         1128 a         2053 c         1920 g         1083 t
ORIGIN      
        1 gtctggctca ctgatgtttg cacgatccgt cgccgtgaca tagaaatggc tgcgagcagt
       61 cggggcaagt gcgagtactc cgactgtatg aggaggaggt gcgtgcgctg cggtccagag
      121 tgcgagatcc gcaccgaacg agtggccgcc aagcacgagc gggagtgaag ttgctcgcat
      181 ctccctgaca gcgcgcgcaa taacgccatc gatcgatgag tcgaatgctg cttcacgaga
      241 ggcgtacggc tcgggaagcc ggtcgatgta cttctttata tcgacgccga tcaccgtgta
      301 tccgttcgat gcaagctgcc gcgccagccg gtcgtgcgcg tcccagaacc cgatgtcgtt
      361 cccgaagaat atcaccaccg ccttcgccga gtcggacgcg ggatagaaat acaggggaag
      421 cgcgcgaagc acaggatctc gcgggacgta cgggggtttt gcggatggac acgcggtcag
      481 ggcaagcgcg agcacggttg cggcaagcag tgacgcgcgg tcgcgagttg acgcgcggtc
      541 gcgatgtgat gcctgttgac tatgcgcgat cacagtagcg tcaccggatc gcgatcgaac
      601 gtcacgcgca ggccgtcccg tgccggcacg gcaaatcgtt ccaggaaata tcttccgacc
      661 cgcgtaagct cgtgcggatg ctcgctcttg agcagtacat gccagcgcca gcgcgtcttg
      721 atgcgctcaa ccgcgcacgg cgcggggccg atcaccgtga gcccgacgct ctcgcgcgca
      781 cggatgagac gacggagcca cgctgcccct gcaatcgcga gatccgcgac gcccgactcg
      841 atgctgccgc tgaaaacgat gttcgcgagt ctgttgttgg gcggatacac gggttgaact
      901 cgtccggaca gctcttcagt cacgaatgac atgtaatcat gagtcacggc gcacttcact
      961 gcgtggtgac tcggcacgcg cgtctggatg agcacttcac cgccccgcgc gccgcgtccc
     1021 gcgcgaccgg caacctggct cagaagctgg aagcagcgct cgctcgcgcg gaagtcgggc
     1081 aggttgatgc cgacgtcggc gtcgatcaca cctacgagcg tcacgttcgg aaaatccagc
     1141 cccttcgcga tcatctgtgt accaagcagg atgtcgacct cgccggcacc gacgcgatcg
     1201 aggatttcgg cgtgggccca ctttcccgac gtcgtatcaa catccatgcg cgcgacacgc
     1261 gcggatgcaa aacgctcgca gatcaggcgc tccacctgct gggtaccgag tccgcggcgt
     1321 tgcaacgtcg cgccaccgca gcgcttgcaa acgcgctgtg gctcttcctg gtgcatgcaa
     1381 tagtgacaga ccagtcgctc gggcgagcga tgatacgtga gagttatgct gcagttggga
     1441 caggttgcaa cgttaccaca gttctcgcac tggacgaacg ccgaatagcc gcgccggttg
     1501 agcagcagaa tgctctgctc tccacgatcg agtctggcac gaatcgcagc gtcgagcggc
     1561 cccgtcacga ctcgctgata atcatcctcg cccgcagtgg cggccgggtc gattacggcc
     1621 ttgcgcagat caacaacagc aacactcggc aatgtcgcgc cgccgacacg atccggaagc
     1681 gacagcagcg tgaacttgtc agcgacggcg ttggtccagc tctccagaga gggagtcgcg
     1741 ctgccgagca cgacgatggc accttcctgc gtggcgcgca cgatcgccgc ctcgcgtgcg
     1801 tgatagcgcg gcgtctcgcc ctgcttgtag ctggactcgt gctcttcatc gacgatgatc
     1861 gcaccgatgt tggtgagcgg tgcgaagaca gcggaccgcg cgccaactgc gattcgcttc
     1921 tcgccgcgct tcaatgccag ccacgcatcg tatcgctcac cgtcgctgag tgcactgtgc
     1981 aggactgcga cgtcgtcgcc gaatacagcg cggaaccggt ccaccgtctg cggagtgagt
     2041 gcgatctccg ggacgagcac gatcgccgtc ttgccgcggc gctcgactat ctcacgcaac
     2101 agctcgatgt ataccagagt cttgccgctg cccgtcacgc cgtgcaacag gaacacttcg
     2161 cccggacgcg ccgtctccat ccggccgatc gcggcaagct gttccgccgt cggatcatgt
     2221 cgcggctcgt tccttcccac acgcgtcgcg aacggatcac gctcgacgcg ctcgcgatcg
     2281 atgcttatga gcgcacgctt ctcgagtgcc ttgagcacgg acggagaaaa tttgagctgc
     2341 tcaagaaggt gttccacgct cgtcgcgcca ccgagcgact cgatcagctc gaacagggcg
     2401 cgctgctgtg gcgcgcgcac aaatgccttc tcacgctgca gcagcgtcgg aatgtcgtcc
     2461 ctgatgcgca cgacgcgccg cgtcttcaca ctcggatgcg gttgcgccgc gcccgtcagc
     2521 aaagcgggca gaaccgtgcg catcaccacg cccagcggga cgacgtaata ctcggagatc
     2581 cagcccgaca gcgcgagcag tccatcgtcc agcgccggct cggcgtcggg cacggcggag
     2641 acggccttga cgacgccccg ggctggcggc gcagcgtcga gcgcgacgac tatcccgatc
     2701 tcctgtcgct tccggaacgg cacgagaaca cggctgccga ctcgtgcctc gtgctcatac
     2761 tcaccgtcga gtgagtaaac gaacgtctgg aagagcggca ccggcagcgc aacctccacc
     2821 agacggcgcg cctgatccgt cactctggtc gccgccgggt aacgccgagt ccgggagaat
     2881 cgacaagcct cacctggcca tccgaaatcg tcacaccgtc gaacggatct tcggcgagca
     2941 gtgcggcacc atcgaaatca gcagcgtcga gcaacggcgc gatctgggct atcgcggata
     3001 taccgagcga cgtttcgatc atgcagccgg ccatgacgcc gaggttgtgc gcgcgtgcca
     3061 cgtggacgag cctgacggct tcgcgaaggc tgccacactt tgcaagcttg atgttgatcg
     3121 catcacacgc tcccgccaga cgcggaacat ccgccgctac gaggcatgac tcgtcggcga
     3181 tcacgggaag gccgcaacgt tcccgcacaa agcgcatgcc gtcgatgtcg gccgcagcga
     3241 ccggctgctc aacggattcg acggcattat cgcgcagcat cgccgcgcgc tcgatcgcct
     3301 gctgcggact ccacgcggca ttggcatcca cgcgcagcac cttgtcggga gctgcttcgc
     3361 gcaccgtgcg cactatctcc tcgtcgcggt cggtgccgag cttgatcttg agtatcggat
     3421 actgcgccgc gtcgtgcacg cgccggcgca atccatcgac gtcgtcgatg gcgatcgtaa
     3481 agctcgagag cggcactgca tcggcgctca agccccagag cttgtggagt ggaagcccag
     3541 ccttgcgcgc gtgaaggtca tgcatcgccg agctgacggc cgcgcgcgcc gacgcgttgc
     3601 cgcgcagtgc cgttgcaagt gcggcatccg ttgcttcgag cgaccatgat tgcgccgact
     3661 cgacaatggg cctgtaccgc tccagcgccg cgcagacgga atcgggcgac tcgccataat
     3721 agcgattcgg cgcggcttca ccattaccgg tcacaccatc gtccgtgatg gtgacgatta
     3781 cgttctcgtg gccggcgtac ccccagcgag cgatcacgaa cggcagtgtg gtgcggagcg
     3841 agacccgctc ccacgtgagt tgcatctcgc gacggtcagg acgtgaagac gaacgacggc
     3901 agcacgcgcg agaaccagcc gttgcgtttt tccggattcg gcgcgccggt ctgtgcgaga
     3961 tactgaatca gcgcgtctgc gacatcgttg ccgcgttgat accgggcaga cggatccttg
     4021 gcgaggcaac gcatcacgac cgcggagagc gccgccggta cgcgtgagtc gacgatgtcg
     4081 ggtgataccg ggatctcttc gagatgcttg gacgttatcg agtagatgtc agcaccgtcg
     4141 aacggcacga acccgaccag cgtctcgtac atcacgatgc cgagtgtgta cagatcgctg
     4201 cggccatcga gcagacggcc gcgcgcctgc tcgggcgaca tgtagtgggg agtgcccatt
     4261 acatggcccg ttcccgtcat gcggccgcgg aaatgcgcgg tcgcaattca gaagtccgtg
     4321 accacagcat gctcgtcctc atcgaacagg acgttgtcgg gcttgatgtc gcggtgcacg
     4381 acaccatgcc tgtgcgcgta atcgagcgcg ctcgagacct gcgcgcacac cgccgcgacg
     4441 cgctccggtg gaagcgagcg acgaccggag atgcgatcgc cgagcgtccc gcgcgagaga
     4501 tacggcatca ccgtgtacac gtgccgctcg gtcatgccga agtcgatgat gttgcagatg
     4561 tgcggatgca ccagttgtgc ggcggtctcc gcctcgcgcc tgaagcgctc ccgcatgtcg
     4621 gcgtcgcgcg ccagatgagg gtgcagcacc ttgagcacta ccggtcgatc cagcgcgttg
     4681 tgcattgcat agtacaccgt cgccattccg ccgtcgccga tgcgatgcga aacgctgtag
     4741 cgtccgccaa tcacgtgcct gagcgacgtg atgtcggcgt cgggacgctc ctcgcgcgcg
     4801 gcgacagctg gcagcgccgc gtcgcagcga gtgcatcgcg ccgcggtgcc gcgattccat
     4861 gacccgcatc ctggacagaa cacctagccg ccgaactcca tgcgtacgta atcgtagggc
     4921 ggctggtcgc cgtcgcgttg ctcgatcatc gccatcgctt catgaagctt ggcgtagtga
     4981 acgtcgagcc agcgagccag cactgattca tcgcggaata tcgtccctgg cggcgcggga
     5041 actatcgtgc ccttctcgct gaatgcatcc acaacgcgca gataatccga cagatcagca
     5101 tcggtcggct cgctccgcac gtagggagca accgccacta ccgcggcgag atcgcgatac
     5161 gtgacgagct gcacgctctg ctcatcgagc aatttcttgt cgcccgtgtc cacgtcgatc
     5221 acgccgtaca ggcgcaggcc ggtccttccg ctcgcgctag ccatgcgcca tcgccggcat
     5281 ggcgtgcggc cacttcactc ccttgatgat cgagaagttc atggatcgtt cgcgggacag
     5341 atcgcgcagc aattcagtct cgcgcacgag cgcctgacgc gcctcggccc aaccggacct
     5401 gcggagagca cgtcccatga tctgcatctt cgcctgccag ttgagacgcg gagacgcacc
     5461 ctcaccgtcg gccgcgagct cgtcgtcgca ctcgttggtc cagtccttca cctgaatgtc
     5521 cacgacaccg gcctcgcgca gcatctgctt ccactcgacc accatccgcg gacggagtcc
     5581 caggcgctcg acaacgagct ctcggcgcga ctccgaaagc tcggagctcc acgtgagttg
     5641 cagcaggacg accgagccca tcggcttggt gactcgcgca agctcggcaa ctgcctttcc
     5701 ggtactcgcg gctgcggcga tttcgggctc gccgatggcg gcgtcgaaca ctccgttctc
     5761 gtacggcagg tcatccagct tcgcatgctg atagctcagc cccaggcccg tgtcgcgcgc
     5821 gtgctcctcc gcctgtgtga tgtcttcgtc gtcgggatcc acgcccgtta ctgaggcgcc
     5881 ggtgcgcagg gccagccatt cagtggtaac accgcgcccg caaccggaca cgacgatgtc
     5941 ctgacccttc tcgaggtcgg caagccgggc gacctcgcgg tagaggtcct ctcccgtagc
     6001 tcgccagcgg tcgatgatcg ccatctgcac cagccgcaaa accgctggcg ccggagtggt
     6061 tctattccct tctggcatcc agcgaaagct atccggctgc agtcagggcg gcgagtgcac
     6121 gcatgtgaac gaccaccgct tccgccagcc gaagcggtgt gtagccgcct tccagcgcgc
     6181 tcac
//
LOCUS       DATIMD010000266         1949 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3277799, whole genome shotgun sequence.
ACCESSION   DATIMD010000266 DATIMD010000000
VERSION     DATIMD010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3277799"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1085
                     /locus_tag="VLI40_06210"
     CDS             <1..1085
                     /locus_tag="VLI40_06210"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSU96804.1"
                     /translation="TIDEWKTYARGISRGEQTSIVRIHKLASGETRTVEVFAGEFMLG
                     DRRVFHSIVHDVSDRVRAEEALRDSEARFRNALDSSLDIFTVLDTVRDADGVIIDFRV
                     VEVNARAGTALGVDASRMIGRSFGELLPYSANAALLKSLVAVAETGEATETEIQPRVG
                     PLADKWLSCQIVALGRGVAITARDVTDRRRAEDELRALSLVDSLTGLFNRRGFEAIAA
                     QQLKSAEHTTKASFLFYFDMNDFKVINDTWGHAAGDDALVKMAGVLRQTFRETDVIAR
                     MGGDEFVALALNCGEVADTVLARLRAEITQQNARNGLAGLGYTLSSGVGIARFMPESP
                     RSLEALLATADRDLYEDKRLGGRETA"
     gene            1168..>1949
                     /locus_tag="VLI40_06215"
     CDS             1168..>1949
                     /locus_tag="VLI40_06215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSU96805.1"
                     /translation="MEPTRISVLVVDDEPALREVLSLRIQDWGYDVTTAVDAADAERA
                     LHQGRPDVILSDVVLPGISGVELLRWLRRNDETVPVIMMTAHGNIDAAVDAMKAGARD
                     FLTKPLDYAVLRGLLDAVAAERNQRELDHELDANLEGAASLGGLVGKSRSIRELQKLI
                     QVVASSDASAIITGESGTGKEVVAHAIHTLSNRHDKPFVALNAAAIPEGLIESELFGH
                     EQGAFTGANRARPGAFELANRGTLFLDEIAEMPIALQPKLLR"
BASE COUNT          373 a          614 c          634 g          328 t
ORIGIN      
        1 tgacgatcga cgaatggaag acgtacgcgc gcggaatttc gcgcggcgag cagacgtcga
       61 tcgtgcgcat tcacaaactg gcgtcgggcg agacgcgcac cgtcgaagtc tttgccggcg
      121 aattcatgct cggtgacaga cgcgtctttc actcgatcgt tcacgacgtg agcgaccggg
      181 tgcgcgcaga agaagcgctg cgtgattcgg aagcgcgctt tcgcaacgca ctcgacagca
      241 gcctcgacat cttcacggtg ctcgacaccg ttcgcgacgc cgatggcgtg atcatcgact
      301 tccgcgtagt cgaggtgaac gcgcgcgccg gcactgcgct cggcgtcgac gcttcccgca
      361 tgatcgggcg cagctttggc gaactccttc cgtattccgc gaacgcagcg ctgctcaaga
      421 gcctcgtcgc cgtcgcggag accggtgaag cgaccgagac ggagatccag ccgcgagtgg
      481 gtccgctggc tgacaaatgg ctctcctgcc agatcgttgc actcggacgt ggcgttgcga
      541 tcaccgcacg cgacgtcacc gacaggcgcc gcgcggagga cgaactgcgc gcgctatcgc
      601 tcgtcgattc gctcacggga ctgttcaatc gtcgcggctt cgaggccatt gcagcgcagc
      661 agctcaagag cgcggagcac acgaccaagg cttcgttcct gttctacttc gacatgaacg
      721 acttcaaggt gatcaacgat acgtggggac acgccgccgg ggacgacgca ctcgtcaaga
      781 tggccggagt gctcaggcag acgttccgtg agaccgacgt gatcgcacga atgggtggcg
      841 atgagtttgt cgcgctcgcg ctcaattgcg gcgaggtggc cgataccgtg ctggcgcgac
      901 tccgagccga gataacccaa cagaacgcgc gcaacggatt ggcggggctc ggctacacgc
      961 tgtcgtccgg agttggcatc gcccgcttca tgccggagtc accgcgatcg ctggaagcgc
     1021 tgctggcgac cgccgaccgg gacctgtacg aggacaagcg actcggcgga cgcgagacgg
     1081 cttaggccgc attcccttcc ccgccctcct gaccgaattt cccactcccg gccggacgga
     1141 aggactcgat gtttacattg caacagtatg gaaccgaccc gaatctccgt cctggtcgtg
     1201 gacgacgagc cggcgctccg cgaagtcctc tcgctgcgaa tccaggactg gggctatgat
     1261 gtgacaacgg cggtcgacgc cgctgacgcg gagcgcgctc tgcatcaggg gcggcccgac
     1321 gtgatactgt cggatgtggt cctgcccggg atctccggcg tcgagctgtt gcgatggctc
     1381 aggcgcaacg acgagaccgt tccagtgatc atgatgactg cgcacggaaa catcgacgca
     1441 gccgtcgacg cgatgaaggc cggcgcgcgg gattttctta ccaagccgct cgactacgcg
     1501 gtgctgcgcg gactgctcga cgccgtcgcc gcggaacgga atcagcgcga gctggaccac
     1561 gagctggacg cgaatctcga gggcgcagcg agtctcggtg gactggtcgg aaaaagccgc
     1621 tcgattcgcg agcttcagaa gctcattcag gtcgtcgcgt cgagcgacgc ttcagcaatc
     1681 atcactggag aaagcggcac gggcaaggaa gtcgtcgctc acgcaatcca cacactcagc
     1741 aaccggcacg acaagccatt cgtcgcgctg aacgcggcgg cgattcccga ggggctcata
     1801 gagagtgagc ttttcgggca cgagcagggc gcattcacgg gcgccaaccg cgcgcggccc
     1861 ggcgcattcg agctcgcgaa tcgcggcacg ttgtttctgg atgagatagc ggaaatgccg
     1921 atcgcgctcc agcccaagct gctgcgcat
//
LOCUS       DATIMD010000267        10288 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_968548, whole genome shotgun sequence.
ACCESSION   DATIMD010000267 DATIMD010000000
VERSION     DATIMD010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 10288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10288
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_968548"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3228
                     /gene="sprA"
                     /locus_tag="VLI40_06220"
     CDS             <1..3228
                     /gene="sprA"
                     /locus_tag="VLI40_06220"
                     /inference="COORDINATES: protein motif:HMM:TIGR04189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein SprA"
                     /protein_id="HSU96806.1"
                     /translation="TIPGQLPIPRIVPKFAICRNQYGALYQVGDTRTDCTVGNGRLDE
                     EDLDGDNVLNLNSTQREQEQIRRFVVDLSDERKFNRVGKCIERPTARGETVPRSPVCW
                     VFVRVPFRAPDDTLNSPLLSRARALRITMISGAGVPDTAVSQVALDQLRLTGAPWLKR
                     NDAAIRGIAGEQPDLGFVTVGTVGTQDRGVSGGVNYDSPPGVTNLPDLKATAVTSSRV
                     PINEHSLRVIAGGLNTFDRAEAYYRFPEGQKNFMSYKELRVWARGVSTGWGANGELQF
                     YVKLGHDASNFYMYHTPLPGNGVGPSAWLPEIRVDFSRLIALRAQIQNAYLRGSQRNM
                     CTGADSVLIANTPFQPTTSTSAVYAACSDGYMVYTTDPGVNPPNLAAIQELSVGMMRV
                     PGTSVARPISPSDTLELWVDDLRLGGVVDATGFAGQVALGVTASDFADVRVNLTRRDP
                     NFRQLGDQPTYLTDNTVDVSAAFRLEKLLPRSLGYAIPVTFNYSGASSDPTYLTQSDI
                     DASAVPGLRSPHNGAASVTFGVKRATPVKGGTLAPVLNNLSMQGTYTSAGAQSEYEDG
                     HAHDLRVGLEYNLLRAVAPSLATVLPTELYLTSTYENGNDQRLTYLKPAAALDDTAQV
                     VTGITNTISNGGAIAFHPLRNSTIRFNMSSLRDLRSYADIPALGLVDAEERNRVAGFD
                     TGLERQRTVGTQLSYSVTPLPWLRARFNSSSNYNMLRDPNTLDFIRAVDTLGQFRIPR
                     NIGNTQNANLGFTIDFRALANITSFIPGVKSFISAFQPLDISLDRNVLTAYDAAAASA
                     PLMYQLGFGSISQFRHIGSESATSAGVNDQLTLSQTINLPFGATLTNHLQRLTQRNWT
                     LRSDDSQDVGNATQLVFPDVALRWTKRIADSTALIRNFSASARVAGTTQRLTSPGEFS
                     LPDGENGETRIRSYPVSLSAIWAGERPLTTSFGVNLVQRMDNEPGLSGRGTSMDINAD
                     VARAFALPEQWHPHSDLRTRLSFQNSHGRSYVLNPLDIVGRSRLTDNGRRSASFSADT
                     DVSDTMTSTFVISRVDSFDANLSRTFTQTVLSAILHLQFYSGEMH"
     gene            3311..4231
                     /locus_tag="VLI40_06225"
     CDS             3311..4231
                     /locus_tag="VLI40_06225"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSU96807.1"
                     /translation="MNRLLLCLAALPLLAGCQKSKTGFDGEAAYRYAATQVSFGPRVP
                     GSPGWQKAGDWIVAQMRARADTVIEQRWMHTLANGDSIPMRNILARFRPQATDRVLYL
                     THWDTRPIADSDPNPANRNKPILGANDGASGVGLFVALGDLLKKTPPNVGVDLLFVDG
                     EDYGSFGPPKDVDVLIGSTYFASHLPSPGYQPIFGVLFDMIGDKELDIYEEQNSVARA
                     PEVVSRVWKTADDLGYSQYFLPQMGMAVTDDHIPLLQAGLRVIDVIDIDYESPSNNYH
                     HTLADTMDKISAKSLGIVGDVAAALVTTQQ"
     gene            4964..6808
                     /locus_tag="VLI40_06230"
     CDS             4964..6808
                     /locus_tag="VLI40_06230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HSU96808.1"
                     /translation="MTATVAPVAQSAERIGALLISEGLITREQLAQALQEQRTSGGRL
                     GYTLVKLGIVDELTLTRLLARQYKIPAVDLTKSDIDPALVRLVPAEIAIQHLVLPLKR
                     EGRVLYVAMADPTNIRVIDDLKFRTRSDIYPVIAGEYTLRTMIERVYPEESLTDSGME
                     SLLDNIDLGDEDVEMVEEEQEEMTAAALTVAVNEAPVVKLINAILTDALHKGASDVHF
                     ECFEKELRVRYRVDGVLREVMKPPFKMRAALISRFKIMAGLNIAERRVPQDGRIKLKI
                     GHKVIDFRVSTLPTLFGEKVVLRILDKGNLTLDLETFGIEPRAERELMEAVQNPYGMV
                     LVTGPTGSGKTTTLYSALSKVNTIDVNIMTAEDPVEYNLYGINQVQVRTEIGMSFAAA
                     LKAFLRQDPNIIMVGEVRDLETGGIAIKAALTGHLVMSTLHTNSAPETVTRLLDMGLE
                     PFNVASALNLILAQRLVRRICPNCKTRYVPDDIELTGAKVKASTTLRELRFTEMSLND
                     ARSRATPEAAPHLHGLSLSTTIGELPFFKGKGCDACGGTGLKGRQGLYEVMFVTQELR
                     KIIMKNGDADDIKEAAIGQGMLTLRMDGWLKVLKGITTLDQVIRETTA"
     gene            6896..8167
                     /locus_tag="VLI40_06235"
     CDS             6896..8167
                     /locus_tag="VLI40_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HSU96809.1"
                     /translation="MTAPASSFRPHAPEPTGGPPAARSPEQPQDGHAAPQPNASRAQE
                     LSLRALLQEMIERGASDLHVVCNTRPKLRINGDITDSRFPQSLTPKETLQLAYSVLTD
                     QQKKRFEIEDELDFSFGLANLARFRGNVFKQRGSVSIVFRQIPFSVRTFEDLKLPPAV
                     AKMAERPRGLVLVTGPTGSGKSTTLAAMIDRINRERRGHIITVEDPIEFIHRHQGCIV
                     NQREVGTDTKSFATALKYALREDPDVILIGEMRDLETIQAALTIAETGHLAFATLHTN
                     SAAEAINRIIDVFPSHQQPQVRAQLAFVLEGIVSQTLVQTVGGKARAMAAEVLVMNQA
                     VRALIRDDKIHQIYSTMQSGKKYGMQTLNDSLYALYMAREVSAEECLRVSGDPAEFMR
                     MTGVNADGEPSKDGPVRGTAQTPYSTSGGKR"
     gene            8171..9367
                     /locus_tag="VLI40_06240"
     CDS             8171..9367
                     /locus_tag="VLI40_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HSU96810.1"
                     /translation="MPTFAYTARAAGGELKSATVDAASKDDVIAQLRRQRLTLVKIED
                     ESKKKPKRLGRVKTRDIVIFTRQFSTMINSGLPLVQALDILSKQTDNKALASVTREVV
                     FDVESGHTLADALRKHPKAFSELYVNMVAAGEAGGILDTILMRLATFMEKNDALIRKV
                     KGAMIYPGVILSVAFIAVTTLLLFVIPVFQKMFGSVGLALPMPTRIVIGASDLLKSYW
                     WLMGGVGAAAVMFLTKYYTTPDGKLRIDRMLLRVPILGDVLRKSAVSRFTRTLGTLIS
                     SGVSILDGLEITAKTAGNRVIQDAIMASRASIAGGDTIAQPLAKSKVFPPMVISMISV
                     GEQTGGLDEMLSKIADFYDEEVDAAVTGLLAALEPLMIVFLGVVVGGMVVAMYLPIFD
                     MINAVQ"
     gene            complement(9410..9967)
                     /locus_tag="VLI40_06245"
     CDS             complement(9410..9967)
                     /locus_tag="VLI40_06245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96811.1"
                     /translation="MRIVAIGRANVGGGLARRWTAAGHEVTALGREGGDAAGADVVLV
                     AVPSAAIADSLAKVTGLRGQPTIDATNTFGPYPTGYSSLAQQVKSIIGGPTAKAFNTN
                     FAALYDQVDAEVVRPGTLFATDPEARNVTEQLIRDAGFDPVYLGDLGQAQLLESMIGV
                     IMGVSKGGLGPFFYRFSRPGAFSAG"
     gene            complement(10060..>10288)
                     /locus_tag="VLI40_06250"
     CDS             complement(10060..>10288)
                     /locus_tag="VLI40_06250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96812.1"
                     /translation="GHPSLTLRTGFVHVAEARSDWAPDPAHPLPKFSPPRRVPHGVTL
                     IGRLFDEGTIARAGLALERSLGVVKERPPGF"
BASE COUNT         2055 a         3296 c         3010 g         1927 t
ORIGIN      
        1 acgatcccgg gccagttgcc gatcccgcgg attgttccga agttcgcgat ctgcagaaat
       61 cagtacggcg cgctctatca ggtcggcgac acgcgcaccg attgcaccgt tggtaatgga
      121 cgtctggacg aggaggatct cgacggcgac aacgtgctca atctcaatag cactcagcgc
      181 gaacaggagc agatacgacg gttcgtcgtg gatctttccg acgaacggaa gttcaatcgg
      241 gtcggaaagt gcatcgagcg cccaaccgcg cgcggggaaa ccgtgccgcg ctcaccggtc
      301 tgctgggttt tcgtgcgcgt tccattccgc gcgcccgatg atacgttgaa ttcgccgcta
      361 ttgagtcgcg ctcgagcctt gcgcatcaca atgatctcgg gcgcgggcgt ccctgatacc
      421 gcggtcagcc aggtagcgct ggatcagctt cgccttaccg gcgcaccgtg gctcaagcgc
      481 aacgacgcgg cgattcgcgg aatcgctggc gagcagcccg acctcggttt cgtcaccgtc
      541 ggcacggtgg gcacccagga ccgcggcgta tccggaggcg tgaattacga ttcgccgccc
      601 ggcgttacca atctgccgga cctcaaggcg accgcagtta cctcgtcgcg cgttccgatc
      661 aacgagcact cgcttcgtgt cattgccggc ggcctgaaca cgttcgatcg tgccgaagcc
      721 tattaccggt tcccggaagg tcagaagaac ttcatgagct acaaggagct gcgcgtgtgg
      781 gcgcgcggcg tgagcaccgg ctggggagcc aacggcgagc ttcaattcta tgtgaagctg
      841 ggtcacgatg catccaactt ctacatgtat cacacaccgc tgcccggtaa cggagtgggt
      901 ccgtcggcgt ggcttcccga aattcgtgtc gatttctcgc ggctcatcgc gctccgtgcc
      961 cagatccaga atgcatacct ccgcgggtcg cagcgtaaca tgtgcacagg tgccgattct
     1021 gtcctcatcg cgaacacgcc gtttcaaccg accacatcca ccagcgctgt atacgccgcc
     1081 tgctccgatg gctacatggt gtacacgacc gatccaggag tgaatccgcc caacctcgcg
     1141 gcgatccagg agctttccgt gggcatgatg cgcgtgcccg gcacgtccgt cgcgcgacca
     1201 atctcgccca gtgatacgct ggagctgtgg gtcgatgacc tgcgactcgg tggcgtcgtg
     1261 gatgcgaccg gtttcgccgg ccaggtcgcg ctcggcgtta cagcaagcga cttcgccgat
     1321 gtgcgcgtca acctcacgcg ccgcgatccc aattttcgtc agctgggtga tcaaccgacc
     1381 tatctgaccg acaacaccgt ggatgtgagc gccgcgttca ggttggaaaa actgcttccc
     1441 cgatcacttg gttacgcgat ccccgtcaca ttcaactaca gtggtgcgtc gagtgatccg
     1501 acgtacctga cacaatcgga catcgacgcg agtgcagtgc ctggacttcg atcgccgcac
     1561 aacggagccg catccgtgac cttcggcgtc aagcgtgcga ctccggtgaa gggcggaacg
     1621 ctcgcaccgg tgttgaacaa tctgagcatg cagggaacct acacctcggc aggtgcgcag
     1681 agtgaatacg aagatggcca cgcgcatgat ctgcgcgtcg gtctggagta caatctcctt
     1741 cgcgccgttg cgccatcgct ggcaacagtg ttgccaaccg aattgtatct cacctccacc
     1801 tacgagaatg ggaacgacca acgcttgacg tatctcaagc cagccgcggc acttgacgat
     1861 accgcgcaag tcgtcaccgg tatcaccaac acgatcagca acggcggcgc gatagcattc
     1921 catcctctcc gcaacagcac cattcgcttc aacatgtcgt cgctgcgtga tctcaggtcc
     1981 tacgctgaca ttccagctct gggtctggtc gacgcggagg agcggaatcg cgtcgccggc
     2041 ttcgacaccg ggctcgagcg acagcgcacc gtcggaacgc agctcagtta cagcgtcacg
     2101 cctctaccgt ggctgcgcgc gcgcttcaac agcagttcca attacaacat gctgcgcgac
     2161 cccaacacgc tcgacttcat acgtgcggtc gataccctcg gccagttccg aatcccgcgc
     2221 aatatcggca acacgcagaa cgccaatctc ggattcacaa tcgacttccg ggctcttgcc
     2281 aacatcacgt cattcattcc cggtgtgaag tcgttcatca gcgccttcca gccgctcgat
     2341 atctcgctcg accgaaacgt gctcacggca tacgacgctg ctgcggcctc cgcaccgctc
     2401 atgtatcagc ttggcttcgg tagcatcagc cagttcaggc atattggatc ggaatccgcg
     2461 acgagcgctg gcgtcaacga tcagctgaca ctgtcgcaga cgatcaatct tccgttcggc
     2521 gcaacgctca cgaaccacct gcagcgtctg actcagcgga actggacact gcgctccgac
     2581 gacagccagg acgttggcaa cgcgacgcag ctcgtctttc ccgacgtggc acttcgctgg
     2641 accaaacgca tcgccgattc gactgcgttg atccggaact tcagcgcaag cgcgcgggtt
     2701 gccggaacaa ctcaacggct caccagcccc ggtgaattct cgctgcccga cggcgagaac
     2761 ggcgagacac gcattcgcag ttatccggtc tcactcagcg cgatctgggc cggagagcgc
     2821 ccgctcacaa cgtccttcgg agtcaatctg gtgcagcgga tggacaatga gccgggcctc
     2881 agcggccgcg gaacatcgat ggacatcaac gccgatgtcg cacgcgcatt cgcgcttccc
     2941 gagcaatggc atccgcacag cgacctgcgc acgcggctct cgttccagaa cagtcatggc
     3001 aggagctacg tgctcaatcc gctcgacatc gtcggccgca gtcgcctcac tgacaacggt
     3061 cgccgctcag ccagcttctc cgctgacacc gacgtgtccg atacgatgac gtcgacgttc
     3121 gtcatctccc gcgttgacag cttcgacgcc aatctcagca gaacgttcac gcagaccgtc
     3181 ctgagtgcga tcctccacct ccagttctat tccggtgaga tgcactgatg gcgtccgccg
     3241 ccagaagcca acgaccgacg cccgggctat cttttctacg ttacttcacc ggttacacca
     3301 ccagccacgt atgaatcgct tgctcctctg tctcgccgct cttcccctgc tcgcaggttg
     3361 ccagaagtcg aaaaccggct tcgatggcga agcggcgtac cgctacgccg cgacgcaggt
     3421 ctccttcgga ccgcgagttc ccggatcgcc gggatggcag aaggctggtg actggatcgt
     3481 cgcgcagatg cgcgcccgcg ccgacaccgt catcgagcag cgctggatgc acacgctcgc
     3541 caatggcgac agcattccga tgcgaaatat tctcgcgcga ttccgcccgc aggctaccga
     3601 tcgcgttctc tacctcacgc actgggacac cagaccgatc gccgacagcg atcccaatcc
     3661 ggccaatcgg aacaagccta ttctcggcgc caacgacggg gcctctggcg tcggtctctt
     3721 cgtcgcactt ggcgacctcc tcaagaaaac gccgccaaac gttggtgtgg atcttctctt
     3781 tgtcgatggc gaggactacg gcagtttcgg accgcccaag gatgtcgacg tgctgatagg
     3841 atcgacgtac ttcgcgtcgc acctgccgtc gcccggctac cagcctattt tcggcgtgct
     3901 cttcgacatg atcggcgaca aggagctcga tatctacgaa gagcagaact ccgttgcgcg
     3961 ggcacccgag gtcgtgtcac gcgtctggaa gaccgccgat gatctcggtt actcgcagta
     4021 cttcctgccg cagatgggca tggcggtgac cgacgatcac atccctcttc tgcaggccgg
     4081 ccttcgggtg atcgacgtca tcgacatcga ctacgaatcg cccagcaaca actatcacca
     4141 caccctcgcc gacacgatgg acaagatctc cgccaagtcc ctcggcatag tcggcgacgt
     4201 cgccgccgcc ctggtgacca cgcagcagtg acgtctctgt aagggcaggc ccccgtgcct
     4261 gccccgacga cgctctcccg atggtaccgc cgtccgaccc acgcagcact ccgcgcccac
     4321 ccacagtgcg acgacgcgta gtagtacgtg atgatattcc gtatgggatg atatgatgcg
     4381 ccaagccgac ccctgatccg ccgcgccgcg cctttccacc cgatgttgcc tgcatggcaa
     4441 cccccgctga acgcaaggca ctccttttct ttggaatcgt cgcaatgctc ggtgctggcg
     4501 tccgggtctg gcgtgcccga aatccggacc gaccgcgacc atccaccgac acatttgtgt
     4561 ccgaaccgcg cggtgccgtc gtttcgggga agggcggctc ggacaagtcg tccggttccg
     4621 gccgcaaggc cacccggacc ggagccgcgg ggtcaagaac gggtcagatc aaccgagact
     4681 caaactcgat aatcgacctc gaccgcgcca cgatgtccga gatcgacgcc atcggtgtac
     4741 tcccgaaggg cgtggctcgt cttatcgtag cggaccggga ttcgttcggc ccgttcggct
     4801 cattggggga gttgcaacgt gttccgttcc tttcgacaag tactttgaga aaactggcac
     4861 ccagagtgac attctcccgc attccgcgac ccaggaatac agtcattcat ccgcgcgccc
     4921 ttccggctgg cacctccggc aggcgaaagg cggtgtccgc tccatgaccg ccactgtcgc
     4981 tccagtcgca cagagcgcgg aacgcatcgg cgcgctgctc atatccgaag gcctcatcac
     5041 gcgcgagcag ctcgcgcagg cattgcagga gcagcgaacc agcggcggcc gcctcggcta
     5101 cacgctcgta aagctgggaa ttgtcgacga gctgacgctc acgcgtctgc tcgcacgcca
     5161 gtacaagatt ccggctgtcg acctcacaaa atcggacatc gatcccgcgc tggttcggct
     5221 ggttcccgcc gagatcgcga ttcagcacct cgtacttccg ctcaagcgtg aaggccgcgt
     5281 gctgtatgtt gcgatggcgg atccgacgaa catccgcgtc attgacgatc tcaagttccg
     5341 cacgcgctcc gacatctacc ccgtgatcgc aggcgaatac acgctgcgca cgatgatcga
     5401 gcgtgtatat ccggaagaat cgctgacgga tagcggaatg gagtcgctcc tcgacaacat
     5461 cgaccttggc gatgaagacg tcgagatggt cgaggaagag caggaggaga tgacggcggc
     5521 ggcgctcact gttgccgtca acgaagcgcc agtagtcaag ctgatcaacg cgattctcac
     5581 cgacgctctt cataaaggcg catcggacgt tcacttcgag tgcttcgaga aggagttgcg
     5641 cgttcgttat cgcgtggatg gtgtgctgcg cgaagtaatg aagccgccgt tcaagatgcg
     5701 cgcggctctc atctcgcgct tcaagatcat ggccggtttg aacatcgccg agcggcgcgt
     5761 accgcaggac gggcgcatca agctcaagat cggtcacaag gtcatcgact tccgcgtgtc
     5821 gacgctgcct acgctgttcg gcgagaaggt cgttctgcgt attctcgaca aggggaacct
     5881 caccctggac ctcgaaacat tcggtatcga gccgcgcgcg gagcgtgagt tgatggaagc
     5941 agtccagaac ccttatggaa tggttctggt aaccggcccg actggatccg gaaagacgac
     6001 gacgctgtac tccgcgcttt ccaaggtgaa cacgatcgat gtgaacatca tgaccgccga
     6061 agatccggtc gagtacaatc tctacggcat caaccaggtg caggtgcgca ccgagatcgg
     6121 aatgagtttc gcggctgcgc tgaaagcgtt tctgcgtcag gatcccaaca tcataatggt
     6181 cggtgaggtt cgcgatctgg aaaccggcgg aatcgcgatc aaggcggcgc tcacgggaca
     6241 cctcgtcatg agcacgttgc acaccaactc ggcgccggaa acggttacac gcttgctgga
     6301 catgggactc gagccgttca atgtcgcgag tgcactcaac ctcattctcg cgcaacgtct
     6361 ggtgcgccgc atctgcccca actgcaagac ccgctatgtg cccgacgata tcgagctgac
     6421 gggagccaag gtcaaggcat cgaccaccct tcgcgagctt cgtttcaccg agatgtcgct
     6481 caacgatgcg cgctcgcgcg caacgcccga agcggcgccg cacctccacg ggctgtcgct
     6541 gtccacgact atcggggaac tgcccttctt caagggaaag ggctgcgacg cgtgcggcgg
     6601 tacgggcctc aagggtcgcc agggtctcta tgaagtcatg tttgtgactc aggagcttcg
     6661 caagatcatc atgaagaacg gcgacgccga cgacatcaag gaagcggcga tcggtcaggg
     6721 gatgctgacc ctgagaatgg acggatggct caaggtcctg aaaggaatta cgacacttga
     6781 tcaggttatc cgcgagacca ccgcgtgaaa gcgtgaccac acggtggttt tcgccgtcgt
     6841 atacgatgaa cacttacggc cccgaaactg gccgcgcact ccaacgtaag agcacatgac
     6901 tgcaccagcc tcatcattcc gaccgcatgc ccccgagcca actggcggcc cgccagctgc
     6961 gcggtcgcca gagcagcccc aggacggcca cgccgcgccg cagccgaacg cgtcgcgtgc
     7021 gcaggagctg agccttcgtg cgctgcttca ggagatgatc gagcgcggcg catccgacct
     7081 gcacgtcgtg tgcaatacgc gacccaagct tcgcatcaac ggcgacatca ccgattcgcg
     7141 ctttccgcag tcgctcacac ccaaggaaac gctgcagctt gcgtactcgg tccttacgga
     7201 tcagcagaaa aagcgcttcg aaatcgagga cgagctggac ttctcgtttg gtctggcgaa
     7261 cctcgctcga ttccgcggaa acgtgttcaa gcagcgcggc tccgtgtcga tcgtctttcg
     7321 tcagatcccg ttcagcgtcc gcacgttcga ggatctgaag cttccgccgg ctgtggccaa
     7381 gatggccgaa cgtccacgcg gcctcgtgct cgtcacgggt ccgacaggct ccggaaaatc
     7441 aacgacgctc gccgcgatga tcgaccggat caatcgtgag cgtcgtggtc acatcatcac
     7501 tgtcgaagat ccgatcgagt tcatccaccg tcaccagggc tgcatcgtca accagcgtga
     7561 ggttgggacc gacacaaagt cgttcgcaac tgccctcaag tatgcgttgc gcgaggaccc
     7621 cgatgtgatt ctcatcggtg agatgcgcga tctcgagacg atccaggcgg cgctgacgat
     7681 cgccgagaca ggtcacctcg ccttcgccac actgcatacg aattcggccg cggaggcgat
     7741 caaccgtatc atcgacgtgt tcccgagcca tcagcagccg caggttcgcg cgcagctggc
     7801 tttcgtgctc gaaggaatcg tcagccagac gcttgtgcag acagtgggag gcaaggctcg
     7861 cgcgatggcc gccgaggttc tggtgatgaa ccaggcggtg cgcgcgctga ttcgcgacga
     7921 caagattcac cagatctact cgaccatgca gtcgggaaag aaatacggca tgcagacgct
     7981 caacgactcg ttgtatgcgc tctacatggc gcgtgaggta tccgccgagg agtgcctccg
     8041 tgtcagcggt gatcccgcgg aattcatgcg catgaccggc gtgaatgcgg acggtgagcc
     8101 gagcaaggac gggccggtac ggggcacggc acagacgccg tactccacaa gtggaggcaa
     8161 gaggtaacat atgccaacgt tcgcatacac cgcgcgcgcc gcaggcggcg agctcaagtc
     8221 ggcaaccgtc gacgcagcgt ccaaggacga cgtcatagct cagctgcgac gccagcggtt
     8281 gacgctcgtc aagatcgagg acgagtcgaa gaagaagccc aagcgtctcg gacgtgtcaa
     8341 gacgcgcgac atagtcatct tcacgcgcca gttctcgacc atgatcaact ccggtcttcc
     8401 gctggtgcag gcgctcgaca ttctgtccaa gcagaccgac aacaaggctc ttgcctcggt
     8461 gacgcgtgaa gtggtgttcg atgttgagag cggtcacacg ctcgccgatg cgttgcgcaa
     8521 gcatcccaag gcgttcagcg agctgtacgt gaacatggtt gccgccggtg aagccggcgg
     8581 tattctcgac acgattctga tgcgcctcgc tacgttcatg gaaaagaacg acgccctcat
     8641 tcgcaaggtg aagggtgcga tgatctaccc aggcgtcatc ctgtcggtcg cgttcatcgc
     8701 cgtgacgaca ctgcttctct tcgtcattcc cgtcttccag aagatgttcg gatcggtggg
     8761 cctcgcgctg ccgatgccga cccgcatcgt gatcggcgca tcagatctgc tcaagagcta
     8821 ctggtggctg atgggcggag tgggcgcggc agcagtgatg ttcctcacca agtattacac
     8881 cacacccgac ggcaagctgc gaatcgatcg catgcttcta cgcgtcccga ttctgggcga
     8941 cgtgctcaga aagagcgcgg tatcgcgctt cacacgcacg ctcggcacgt tgatcagctc
     9001 cggcgtgagc attctcgatg gactcgagat cacagccaag acagcaggca accgcgtgat
     9061 tcaggacgcc atcatggcca gccgcgccag catcgctggc ggtgacacga tcgcgcagcc
     9121 gctcgccaag agcaaggtgt tcccgccgat ggtcatctcg atgatatccg tcggtgagca
     9181 gaccggcgga ctggacgaga tgctgtcgaa gatcgccgac ttctacgacg aagaggtgga
     9241 tgcggcggtg acgggcttgc tggcggcgtt ggagccgttg atgatcgtgt ttctgggcgt
     9301 ggtggttggc ggtatggtcg tcgccatgta cctgccgatc ttcgacatga tcaacgctgt
     9361 gcagtaggga ggccggcgct cccgaaccat ccgttcggga gcaccggcat cacccggcgg
     9421 agaacgcgcc cggccggctg aatcgataaa agaaaggccc aagcccgccc ttggacacac
     9481 ccatgatcac gccgatcatg ctttcgagca actgggcctg ccccagatcg ccgaggtaga
     9541 ccgggtcgaa tccggcgtca cggattaatt gctcagtgac attgcgcgcc tcggggtcgg
     9601 tggcgaacag agtgccgggt ctgactactt ccgcatcgac ctgatcgtaa agtgccgcga
     9661 agttcgtgtt gaaggccttc gcggtcggac caccgatgat tgacttgacc tgctgcgcca
     9721 gtgaactgta gccggtcgga taaggaccga acgtgttggt tgcgtcgatg gttggctggc
     9781 cgcgaagccc agtgactttc gccaggctgt ctgcaattgc cgcgctggga actgctacca
     9841 gtacaacatc agcgcccgcc gcatcaccgc cttctcggcc cagcgctgta acctcatggc
     9901 cggcggccgt ccagcgtcgt gcaagcccac cgccgacgtt cgctctcccg atggcgacga
     9961 ttcgcacacg gtccttcttc agcgtgttgt gtacacaccg tcatggcgcg ccgatttgac
    10021 tccgcacgac gcgttccaac ggctccgcaa aacgtgagat caaaatcccg gtggtctctc
    10081 cttcaccacc ccaagcgaac gctcgagcgc cagtccggcg cgtgcgatgg ttccctcatc
    10141 gaacaaccgc ccgatgagcg tgacgccgtg cggcacgcgg cgcggaggcg agaatttggg
    10201 aagcggatgt gccggatcgg gagcccagtc gctacgtgct tcggctacgt gtacgaatcc
    10261 ggtgcgcaac gtgagcgacg gatgccct
//
LOCUS       DATIMD010000268         2823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1259967, whole genome shotgun sequence.
ACCESSION   DATIMD010000268 DATIMD010000000
VERSION     DATIMD010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1259967"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VLI40_06255"
     CDS             <1..406
                     /locus_tag="VLI40_06255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96813.1"
                     /translation="AARTAFSAIAHEYPDRAEPHVFLSRLARNDTPPDMNTAREELIT
                     AIRLNPTYEPAQREMGIFQLAAHNPSLARNFLIRAAQLDPADSAAVGYLGCAMMGLNR
                     VAEAQAFFAHAGTGTWSSCVTIQPSSAAPAGP"
     gene            524..>2823
                     /locus_tag="VLI40_06260"
     CDS             524..>2823
                     /locus_tag="VLI40_06260"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSU96814.1"
                     /translation="MTTFINADAVTRTVLANGLTVLIYRNPAAPVVAVNTYVRAGYFD
                     ETDNVAGIAHVLEHMYFKGTAMYGVGEIAKATKAAGGYLNAHTIYDHTSYYAVLPSSG
                     FDEGLAVQADAYANSAIEADALAKELEVIIQEAMRKEDNAGAVTTETLYALLHDRHRI
                     RRWRIGRPDALRGFTRDDVARFYSNFYTPSNTVLAIAGDVDPAETMERVKALYGALPA
                     GEPVRTPGPTEPAHSGFRYKELNGDVEQTHVEIGWRTVPNEHADVPALDLAAAVLGSG
                     RASRLYRAVRDRKLAGSVGAYNYSPSEVGVFVMSSEGDPATAADAARAMWAQLASVRA
                     GDVSADEVERAHKLFMSRWARHLETTEGQAAYLAEWESLGGWQKGQEYYDAFMRADAG
                     AVVAVVKKYLSEDLAGAVVYRPRNAPAVASDAAAFRALLDNGSVAPLDKSAPSVPEVT
                     PVRAEARFVREEAGVRVYELESGIPVLIKRRANAPIAHIGVYAASGSAYEPRERAGIT
                     ALAARTASRGTTSRTSLQIAEESELLGGSIGASVGSETFGWSFSVPVANLRPAIALLG
                     DVIQHPTLPDDALETERSAMMTDVARLRDDMYRYPMRLVTEATYDGHPYSIPAGGTEE
                     SLRSLAFGDVREWYRASLLHAPFVIALTGDMDADETAGIIANEFSELTLVAREDLAVP
                     EWPANPVVRCVARDKNQSALVLALPSPSRRNDDRFAARLLASIASGLGGRFFEELRDR
                     RSLAYTVHAFGSEHRLSGEFMAYIATS"
BASE COUNT          508 a          836 c          959 g          520 t
ORIGIN      
        1 agctgcgcgc accgcgttca gcgccatcgc acacgaatat ccggatcgag ccgagccgca
       61 tgtgtttctc tcgaggctgg cgcgcaacga cactccgccg gacatgaata ccgcgcgcga
      121 agagttgatc acggcgatca ggctcaatcc aacttacgag ccggcgcagc gtgagatggg
      181 gatattccag cttgcggctc acaatccgtc gctggcgcgc aactttctca ttcgcgctgc
      241 tcagctcgat cccgcggaca gtgcggcggt tgggtacctg ggctgcgcga tgatgggact
      301 caaccgggtg gccgaggcgc aggcgttctt cgcgcacgcc ggtacgggaa cctggtcttc
      361 ctgcgtcacg atacaaccca gttcagcggc acccgcaggt ccctgacgcg gtccacgcgc
      421 cgggcttcag cttcgacaat gatcctcggc cgcatccagt ttgcggccga ggttttttcg
      481 cctccagtgc atcaccttgt gcatcacctt ggtccatcga gaaatgacga ctttcatcaa
      541 tgcagacgcg gtaacgcgca cggtgctcgc gaatggactt accgtgctca tctaccgaaa
      601 tccggcggcg cccgttgtcg cggtcaacac gtacgtaagg gctggttact tcgatgagac
      661 ggacaatgta gccggcatcg cgcacgtgct ggagcacatg tacttcaagg gtactgccat
      721 gtacggcgtg ggcgagatcg cgaaggcgac gaaggccgcc ggcggatatc tgaatgcgca
      781 cacgatctac gatcacacga gctactacgc cgttctcccg tccagcggct tcgacgaggg
      841 tctggcagtg caggcggatg cgtacgcgaa ctcagcgatc gaggcggacg cgctcgcgaa
      901 ggagctggaa gtgatcattc aggaagcgat gcgcaaggaa gacaacgcgg gcgccgtcac
      961 gacggaaaca ctgtacgcgt tgctgcacga ccggcatcgc atccggcgtt ggcgtatcgg
     1021 caggccggac gcactgcgcg ggttcacgcg cgacgacgtt gcgcgattct atagcaactt
     1081 ctacacgccg tccaacaccg tgcttgcgat cgcgggcgac gtggatccag ctgaaacgat
     1141 ggaacgcgtg aaggcgctgt atggtgcgct gccagcgggc gagcctgtac gaacgcctgg
     1201 accgacggag ccggcgcatt cgggattccg ttacaaggag ctgaacggag acgtggagca
     1261 gacgcacgtc gagatcggtt ggcgcacggt gccgaacgag catgcggacg ttccggcgct
     1321 ggatctcgcg gcggcggtgc tggggagtgg gcgcgcatcg cggctgtacc gtgcagtgag
     1381 agatcggaag ctggcgggca gcgttggtgc gtacaactat tcaccgtccg aagtcggcgt
     1441 gttcgtgatg tcgtccgagg gagatcctgc gactgcggct gatgctgcgc gcgcgatgtg
     1501 ggcgcagctc gcgtcggtgc gcgccggtga cgtgtcggcg gatgaagtgg agcgcgcgca
     1561 caagctcttc atgtcgcgct gggcccggca tctggagact accgaaggac aggcggcgta
     1621 tctcgccgag tgggaatcgc tgggcggatg gcaaaagggc caggagtatt acgacgcatt
     1681 catgcgcgct gacgccggtg ccgtggtagc tgtcgtcaag aaatatctga gtgaagatct
     1741 cgcgggcgct gtggtgtatc gtccccgcaa tgcgcccgcg gtggcatctg atgcagccgc
     1801 gttccgcgcg ctgctggaca acggcagcgt cgcgccgctc gacaagtctg cgccttccgt
     1861 cccggaagtt acgccggtac gcgcggaggc gaggttcgtg cgcgaggaag caggagtacg
     1921 tgtgtacgag ctcgagtcag gaatccctgt gctgataaag cggcgcgcga atgctccgat
     1981 tgcacacatc ggtgtgtatg cggcatcggg atctgcatat gagccacgag agcgagcggg
     2041 tatcacggcc ctcgctgcgc gcacggcatc ccgtgggacg acgtcacgca cgtcgttgca
     2101 gattgcggaa gagtccgagc ttctgggtgg gagcattggc gcgtccgtgg gctcggagac
     2161 tttcggttgg tcgttctcgg ttcccgttgc caatctgcgt ccagcgatcg cgctactcgg
     2221 cgatgtgatc cagcacccga cgctcccgga cgacgcgctc gagaccgagc ggtcggcgat
     2281 gatgaccgac gtcgcgcgcc tgcgcgacga catgtatcgc tatccgatgc gtctcgtaac
     2341 cgaagcgacg tatgacgggc acccgtattc gattccggct ggcggaacgg aagagtctct
     2401 gcgctcgctt gcgttcggtg acgtgcgcga atggtatcga gcctcgctgc tgcatgcgcc
     2461 gttcgtgatc gcgctgacgg gcgacatgga tgccgacgaa acggcgggca tcatcgcgaa
     2521 cgagttcagc gagctgacac tcgttgcgcg tgaggaccta gctgtaccgg aatggccggc
     2581 gaatcccgtg gtgcgctgtg tcgcgcgtga caagaaccag agcgcgctcg tgctcgcatt
     2641 gccatcgccg tcgcgcagga acgacgatcg gttcgccgcg cgcctgctgg cttcgatcgc
     2701 cagcggcctc ggcgggcgat tcttcgagga gctgcgtgac cggcgctcgc ttgcgtatac
     2761 ggttcacgcg ttcggaagcg agcatagact gagtggggaa ttcatggctt acatcgcgac
     2821 ttc
//
LOCUS       DATIMD010000269         2680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3854931, whole genome shotgun sequence.
ACCESSION   DATIMD010000269 DATIMD010000000
VERSION     DATIMD010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3854931"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VLI40_06265"
     CDS             complement(<1..257)
                     /locus_tag="VLI40_06265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96815.1"
                     /translation="MRTDESPSELAVHVAASGVTLGGTLGVPTPAGTLPGGVILFAHG
                     SGSSRFSPRNKFVADILRESGFATLLLDLLTQEEESVDVRTR"
     gene            complement(244..753)
                     /locus_tag="VLI40_06270"
     CDS             complement(244..753)
                     /locus_tag="VLI40_06270"
                     /inference="COORDINATES: protein motif:HMM:NF040444.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6496 domain-containing protein"
                     /protein_id="HSU96816.1"
                     /translation="MPSKAATERAHRDAREGKSPSTQAGEFVREEIHHVREGKHGARS
                     PKQAIAIGLSEARRAGVRVAPPKKGTASPRTRRAAKLATKRAAKGTRKRPSTTRSRAI
                     TKALKREGSSATTTRSLSRHAKAAASRRTASQRSASARKAARTKGPAERSAAARKAAR
                     TRARNRAHG"
     gene            complement(846..>2680)
                     /locus_tag="VLI40_06275"
     CDS             complement(846..>2680)
                     /locus_tag="VLI40_06275"
                     /inference="COORDINATES: protein motif:HMM:NF017077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHASE3 domain-containing protein"
                     /protein_id="HSU96817.1"
                     /translation="LPMTSLPMPPVDNLARHTSEHSFTKPMSRWQRVVASSGVAIVVL
                     IIGLVTYGEIVRTRDAAVWVEHSHLTIDRTRATLWDLRDAETGQRGFILTGDEAYLAP
                     YTNALTALAADTSALRLLTVESPLQQRRLDQLAPLVTARLAELDYTIDLRRRQGMAAA
                     LARVRTNRGRKIMDSIRTHVAAMEGTERSLLATRSVAEDRHADIVTLVLIGGTVAAVL
                     FAIVLNGLLMRYAAYQAGAARELALQNSQLQSQALELARQNHQLEEQASELELQQQHL
                     EEQTTELEAQNEQLHQQAVELETQTEELHVITEELGARTEESERARVAAEQAQRVAES
                     ANRAKADFLATMSHELRTPLNAIGGYVDLMELGIRGAVTAEQLDDLARIKRSGRHLLS
                     LINDILNFAKLEAGRVDFHIVDASVVDLIGGVEALVAPQMHAKGIRVVCERCEPDIAA
                     RADAEKVQQILLNILTNAQKFTPSGGRIGIACTATGDEVSIVVSDTGRGIPADKLGTI
                     FEPFVQVDRHLSSDTVPHSQKGIGLGLAISRELARAMGGDIAARSDVGVGSVFTLTLP
                     RGLATGNATRAETARGDVSSDGETDGETSGGTSGGTSGVTIQPS"
BASE COUNT          427 a          886 c          824 g          543 t
ORIGIN      
        1 cgcgtacgca cgtccacgga ttcctcctcc tgcgtcagca gatccagcag caacgtcgcg
       61 aagccggatt cgcgcaggat gtcggcaacg aatttgttgc gaggactgaa gcgactggag
      121 ccgcttccat gcgcgaaaag aatgacgccg cccgggagag ttcccgcagg ggttggaacc
      181 cccagcgttc ccccgagcgt gacgccgctt gcggctacat gaaccgcaag ctcgctcggt
      241 gactcatccg tgcgcacgat tgcgcgcgcg tgtgcgtgcc gccttcctcg ctgctgccga
      301 acgctcggcc ggtcccttag tgcgcgctgc cttcctggcc gacgcggagc gctggcttgc
      361 ggtgcggcgg ctggccgccg cctttgcgtg acgcgacagc gatcgcgtcg tggtcgcgga
      421 gctcccttcc cgcttgagcg ccttggtgat cgcgcgtgag cgggtcgtgg atggacgctt
      481 ccgcgtgccc ttggccgcgc gttttgtcgc gagcttcgct gctctccgcg tccgcggcga
      541 agcggttccc ttcttcggcg gcgcaaccct cactccggcg cggcgtgcct ccgacagacc
      601 aatcgcgatt gcctgctttg gcgatcgcgc gccgtgcttt ccttcccgaa cgtgatgtat
      661 ttcttcacga acgaactcgc ctgcctgcgt cgatggggac tttccttcgc gtgcgtcccg
      721 gtgcgcgcgt tcagtcgctg ccttgcttgg catctgtcct cctgtgtgat cgagaatcgg
      781 cgcgggtgtg aaagcggcaa accggcgcca aactgcaaat cagcgcatga cgcgggccag
      841 acagatcagg aaggctggat agttacgccg cttgtaccgc cgctcgtccc gccactcgtt
      901 tcgccgtccg tttcgccgtc cgacgacacg tcgccacgtg cggtctccgc tcgtgttgca
      961 tttccagttg caagcccgcg gggcaacgtc agcgtgaaga cagatccgac accaacgtcg
     1021 ctccgcgctg caatgtcacc gcccatggca cgtgcaagct cccggctgat cgcgaggccg
     1081 agcccgattc ctttctggct gtgcgggacg gtgtcggacg agagatgtct gtcgacctgc
     1141 acaaacggct cgaagatggt tcccagcttg tccgcaggaa ttccgcggcc agtgtcactg
     1201 acgacgatgc tgacctcatc accggtggct gtacaggcga taccgatcct gccgcccgac
     1261 ggagtgaact tctgcgcgtt cgtgagaatg ttgagcagta tctgttgaac cttctcggcg
     1321 tccgcgcgtg ccgcgatgtc aggctcgcaa cgctcgcaca cgacgcgaat tccttttgca
     1381 tgcatctgcg gcgcgactag cgcttcgacg ccgccgatga gatcgacgac cgacgcgtcg
     1441 acaatgtgga aatcgactct cccggcttcc agtttcgcga agttcagaat gtcgttgata
     1501 aggctcagca ggtggcgacc gctgcgcttg atgcgtgcca ggtcgtcgag ctgctctgca
     1561 gtcacagcgc cgcgaatgcc gagctccatc agatccacgt agccgccgat tgcattcagt
     1621 ggagttcgaa gctcgtgcga catggtcgcg agaaaatcgg ccttcgcccg gttagccgac
     1681 tcggcaaccc gctgcgcctg ttcggcagcg acgcgcgcac gctcggactc ctcggtgcgc
     1741 gcccccaatt cctcggtgat gacgtgcagc tcttctgtct gcgtctccag ctcgaccgcc
     1801 tgctgatgca gctgttcgtt ctgcgcttcg agctcggttg tctgctcctc gagatgctgt
     1861 tgctgcagtt ccagctcgga tgcctgttcc tcgagctggt gattctgccg cgcgagttcc
     1921 agcgcctgcg attggagctg actgttctgc agcgctagct cgcgagcggc accggcctgg
     1981 tacgcggcgt agcgcatcag caagccattg agaacgatgg cgaaaagcac cgctgcaacc
     2041 gtgccgccga tcaggaccag tgttacgatg tcggcgtggc gatcctccgc caccgatcgc
     2101 gtagccagaa gggatctctc cgtaccctcc atcgcggcca catgggtgcg aatggaatcc
     2161 atgatcttcc tgccgcggtt cgttcgcacc ctggccagcg cggccgccat accctgcctg
     2221 cgccgcaggt cgatggtgta atcgagctcg gcgagtcgcg cggttaccag aggcgcgagc
     2281 tgatccagac ggcgctgctg gagagggctc tcgaccgtca acaaccgcaa cgcactcgta
     2341 tcggccgcga gtgcagtgag tgcgttggtg tacggggcca ggtacgcctc gtctcccgtc
     2401 aggataaatc cgcgctggcc ggtctctgca tccctgagat cccacaacgt cgcccgcgta
     2461 cggtcgatcg tgaggtgact gtgctcgacc cagaccgctg cgtcacgcgt ccgcacgatc
     2521 tcgccataag tgaccaggcc aattatcagg actacgatcg ccacaccact ggacgcgacc
     2581 acccgctgcc atcgcgacat cggtttcgtg aacgaatgtt ctgacgtgtg ccgtgcaagg
     2641 ttgtcgactg gtggcatggg caggctcgtc atcggcagct
//
LOCUS       DATIMD010000270         3102 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1261622, whole genome shotgun sequence.
ACCESSION   DATIMD010000270 DATIMD010000000
VERSION     DATIMD010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3102
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1261622"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VLI40_06280"
     CDS             <1..253
                     /locus_tag="VLI40_06280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96818.1"
                     /translation="FVQIPEPVARVLRDQTTSSVNSAGIDRAVERAVKAHATADSTSR
                     AGTPATAVPMPNGAEPGSTAAPAQPAQPAQPANPTPKKP"
     gene            259..1608
                     /locus_tag="VLI40_06285"
     CDS             259..1608
                     /locus_tag="VLI40_06285"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSU96819.1"
                     /translation="MSLKSVLAFLLCVAPATVAAQSVVPVPAANATTAPNTRMVDTVD
                     RVVAVVGSSVITWSDLAAAVNEQRAAGLKLPDDPAGQLAVARGILNDLVDQEILIQKA
                     KDVKVDVTDAEVTPQVDAQIKQVRSHFQSDIEYRNELKNAGFGSPEEYRRTLFDKLRR
                     DLTQRKTFAELQKTAKPASVTEEEVTAAYDKVKDQLKKRPAMIAFRQIVIAPHASKFA
                     DSVALAKAESLLVQLKKGANFEEMAKRESMDPGTKNVGGDLGWNRRGSDLVPQFEAVM
                     FSLRPGELSPIVKTSFGYHIIRVDRVQPAEVKARHILIAPVIDSNDVHLAYLRADSVA
                     NLWRKGANFDSLVAKYHDPAEEKGILQPYPLDSLPASYKAAVADLKVNDVSAPFPLVS
                     QNGSTKYAIVQIVTKTAEGEYSLPEMRENIRKQLADEKQARALLDELRKQTYVSLRL"
     gene            1605..2522
                     /gene="pdxA"
                     /locus_tag="VLI40_06290"
     CDS             1605..2522
                     /gene="pdxA"
                     /locus_tag="VLI40_06290"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: protein motif:HMM:NF016084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HSU96820.1"
                     /translation="MTASGGVNRPRLAVTVGDPRGIGPEIIRAALEDPALRDVCDMVV
                     VGAEGADVPVDITAGLWTAGDTPAAAGKASGDAIALAVKLALAGEVDGIVTAPIDKFA
                     LLSGGYDYPGHTEMLAELTGSRVAMMLASDRLRVVLATTHIALRDVPRAVTREAIESA
                     AQVTRDGLQDWFGISSPRIALCALNPHAGDHGRFGDEDDTLLAPAAQESGLLGPFPAD
                     TVFVRAIRGEFDAVIAPYHDVGMTAIKVASFGSAVNVTLGLPFPRTSPDHGTALDIAG
                     RGIADPSSFIAATRLCAEIVQRRRRASRQ"
     gene            complement(2458..>3102)
                     /locus_tag="VLI40_06295"
     CDS             complement(2458..>3102)
                     /locus_tag="VLI40_06295"
                     /inference="COORDINATES: protein motif:HMM:NF015436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HSU96821.1"
                     /translation="LDDIIELVSESGLSRYPVYEETIDDIIGIILSKDLIPVLARRPA
                     EFALRPLMRPVYFIPGSREVEDVLADFKRRKEHMAIVLDEYGGTAGIVTMEDLLEEIV
                     GEILDEYDVGEEVDVRTTSNGETIISGATSISEFNEEFGTSIPEEDYTTVGGYVFGAL
                     GRLPVAGDRLASGDVTFVVRDMDGRKIDSLAVEFTAAKLAADAELSQRTAESPR"
BASE COUNT          601 a          949 c          973 g          579 t
ORIGIN      
        1 gttcgttcag atcccggagc cggtcgcgcg cgtactgcgt gaccagacaa cgtcgagcgt
       61 caactcggcc ggcatcgatc gcgcggttga gcgcgcggtg aaggcacacg caacggcgga
      121 ttccacttct cgtgcgggca cgccggcgac tgccgtaccg atgccgaatg gcgctgagcc
      181 gggcagcacc gccgcaccag cacagcctgc acagccggca cagccggcca acccaactcc
      241 gaagaagccg tagtcatcat gtcgttgaag tcagtccttg catttctcct ctgcgtcgcg
      301 cctgctacgg ttgcggcgca gagcgtggtg ccggtgcccg cggcaaacgc gaccacggcg
      361 ccaaataccc gcatggtgga caccgtcgat cgcgtcgtcg cggtcgtcgg cagctcagtc
      421 attacgtgga gcgatcttgc ggcggccgtc aacgagcagc gtgcggcggg cctcaagctt
      481 ccggacgatc ctgccggaca gctcgccgta gcgcgtggca tcctgaacga tctcgtcgat
      541 caggagatac tgattcagaa ggccaaggac gtgaaagtcg acgtcaccga cgcagaggta
      601 acaccgcaag tcgatgcgca aatcaagcaa gtgcggtcgc actttcagag cgacatcgag
      661 taccgcaacg agttgaagaa tgcgggcttc gggtcgccgg aggaatatcg gcgcacgctg
      721 ttcgacaagc tacgccgtga cttgacccag agaaaaacat ttgcggagct acagaagact
      781 gccaagcccg cgagtgttac cgaagaagag gtgacggcgg cttacgacaa ggtgaaggac
      841 cagctgaaga agcggcccgc gatgattgcg ttccgccaga tcgtcatcgc cccacatgcg
      901 tccaaattcg cggattccgt agcgctcgcg aaagctgagt cgctactcgt tcagctcaag
      961 aagggcgcga acttcgagga gatggcgaag cgggaatcga tggatccagg caccaagaac
     1021 gtcggcggcg atcttggatg gaaccgtcgc ggttccgatc tggttccaca gttcgaggcc
     1081 gtgatgttct cgctgcggcc gggcgagctc agtccgatcg tcaagacatc gttcggctat
     1141 cacatcattc gtgtcgatcg tgtgcagccc gccgaggtga aggcgcgcca catcctcatc
     1201 gctccggtga tcgattcgaa cgacgtgcac ctcgcgtatc tccgtgccga cagcgtcgcg
     1261 aatctctggc gcaagggtgc gaacttcgat tcgctcgtag ccaagtatca cgatcctgcg
     1321 gaagagaagg gaatcctgca gccgtatccg ctggattcgc tgccggcgtc gtacaaggcc
     1381 gccgtagcgg atctcaaggt gaacgacgta agcgccccgt tcccgctggt ctcgcagaac
     1441 ggcagcacca agtatgcgat cgtgcagatc gtcaccaaga cggcggaggg agaatactca
     1501 ctccctgaaa tgcgcgagaa catccggaag cagcttgccg atgagaaaca ggcgcgcgcg
     1561 ctgctggacg agctgcgaaa gcagacctac gtgtcgctga ggctgtgacc gcgagcggtg
     1621 gagtcaaccg gccgcgcctc gcggtaacgg tcggcgaccc gcgcggtatc ggacctgaaa
     1681 taatccgcgc agcgctggaa gatccggcgc tgcgtgacgt atgtgacatg gtcgtggtcg
     1741 gtgccgaggg cgctgacgta cctgtcgata tcaccgctgg gttgtggacc gctggtgaca
     1801 ctcccgcggc cgccggcaag gcaagcggcg atgccatcgc gcttgccgta aagctcgcgc
     1861 ttgctggtga ggtcgatgga atcgtcaccg cgccgatcga caagttcgcg ctgctgtcgg
     1921 gtggctacga ctatccaggt cacacggaga tgctcgccga gctgacgggt tcgcgtgtgg
     1981 cgatgatgct tgcgtccgac cggctgcggg tggtgctcgc taccactcac atcgccctgc
     2041 gtgatgtgcc gcgcgcggtc acgcgcgagg cgatcgagtc tgcagcacag gttacgcgtg
     2101 acgggctgca ggactggttt ggaatttcct cgccacgcat cgcgctctgc gcattgaatc
     2161 cgcacgccgg cgatcatggc cgtttcggcg acgaggacga tacgctgctc gcaccggctg
     2221 cacaggagtc ggggttactt ggtccatttc ccgcggacac cgtgttcgtc cgcgcaattc
     2281 gtggcgagtt cgacgctgtg atcgcgccgt atcacgacgt tgggatgacc gcgatcaagg
     2341 ttgcgtcgtt cggaagtgcg gtcaacgtaa cgctcggtct tccgttcccg cgcacctcac
     2401 cggatcacgg caccgcgctc gatattgccg gccgcgggat cgcagatccg tccagcttta
     2461 tcgcggcgac tcggctgtgc gctgagatag ttcagcgtcg gcggcgagct tcgcggcagt
     2521 aaactcgacg gcaagcgaat cgatctttcg tccatccata tcacgaacga cgaaggtcac
     2581 atcgccgctg gcaagtctgt cgcctgcaac gggtagacgg ccgagcgcgc cgaatacgta
     2641 gccgccgact gtggtgtaat cctcttcggg tatcgacgtc ccgaactcct cgttgaactc
     2701 cgagatactg gtcgcgccgg atatgatcgt ctctccgttg ctggtggtgc gcacgtcgac
     2761 ttcctcgccc acgtcgtact cgtccagaat ctcgccgact atctcttcca gcagatcttc
     2821 catcgtcacg attccggctg tgccgccgta ttcgtccaga acgatggcca tgtgctcctt
     2881 gcgtcgcttg aagtcggcga gaacatcctc gacctcgcgt gatccgggta tgaaatacac
     2941 cggacgcatc agcggacgca gagcgaattc ggcgggacga cgtgccagga ccggaatcag
     3001 atccttggac agaatgatcc cgatgatgtc gtcgatcgtt tcctcgtaaa ccggatagcg
     3061 cgaaagtccg ctctcgctga cgagctcgat gatgtcgtcc ag
//
LOCUS       DATIMD010000271         2092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1261756, whole genome shotgun sequence.
ACCESSION   DATIMD010000271 DATIMD010000000
VERSION     DATIMD010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1261756"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1340
                     /locus_tag="VLI40_06300"
     CDS             <1..1340
                     /locus_tag="VLI40_06300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96822.1"
                     /translation="LPDNATLSALSGYAAAGGFSFTAPNSSAIDQTMMRIEFVARPYN
                     GGAGGIAGLPINGPDDGFFRVYVGKSARWVRGDSSETNCGATYVFTTTGTALGSVARP
                     AFVPISEDTAQWFARALAASGRYSGVTYTGPSIASLTSADASTREKAVLSQPTARCYL
                     GGDPNLHAASYRYDPLFSLDTAGVTTMTTAQLLTLVQRVAGDSTTFYAGTVSNPMGYW
                     KPYAGAVAPRLAALWPAEAQYLYPLYRGLNPGTKGVIHVAGTTGVSGTLRGRVTLYAT
                     GNVAILRDTKYVTDPSLSNCTADMLGIISGNNISLADNALQGPLKIGGAVPYRNMDDT
                     KDVFVHGVMMALNTAFGAENFSMGPTNANNCEATINGRGCLYLTGGIIQKQRGAVGQS
                     NGTGFAKRYSYDRCALYNPPPYFPTTGRYTDNRYYEIDPAGFDVAALYRSLTP"
     gene            complement(1411..>2092)
                     /locus_tag="VLI40_06305"
     CDS             complement(1411..>2092)
                     /locus_tag="VLI40_06305"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU96823.1"
                     /translation="AREGADVAIIFLPQEQSDAQETARAIEGEGRRSLLIPGDVTDPG
                     FCIDAVNRVISTFGKLDVLVNNAGYQKNQKNLADVTEEQWDHTFRTNIYGYFHMVKAA
                     VPNMKAGSSIVNTGSVTGLEGEKSLLDYSATKGAIHAFTKTLAQMLTEKKIRVNAVAP
                     GPVWTPLNPSAKPADKVTDFGADVSFGRPGQPEELAPAYVFLASNITSSYISGAILPV
                     LGGETIAG"
BASE COUNT          404 a          606 c          650 g          432 t
ORIGIN      
        1 cgcttccgga caacgcgacg ctgagcgctc tttcgggata cgccgcagca ggcggattca
       61 gtttcacggc acccaactcg agtgcgatag atcagaccat gatgcgcatc gagttcgtcg
      121 ctcgcccgta taacggtgga gcgggtggta tcgcggggct tccgatcaat ggaccggacg
      181 acggattctt ccgtgtatat gtgggaaaga gcgctcgatg ggtgcgcggt gattccagcg
      241 aaacgaactg tggagcgacc tacgtcttca cgaccaccgg gactgctctt ggctcggtcg
      301 cgcgtccggc gtttgtgccg atctctgagg acacggcgca gtggttcgca cgcgcactcg
      361 cggcgtcggg gagatattcc ggagtgacct ataccggccc atcgatcgcg tcgctcacga
      421 gcgcagacgc atcgacgcgc gaaaaggcgg tgttgtcgca gccgactgca cgctgctacc
      481 tgggcggtga tccgaatctg catgcagcga gctatcgata cgatccgctg ttcagcctcg
      541 acacggcggg cgtgaccaca atgacgactg cacaactgct tacactcgta cagagagttg
      601 cgggcgatag cacgacgttc tatgcaggga cggtgagcaa cccgatggga tactggaagc
      661 cctacgcggg cgctgtcgca ccgaggctgg ctgcactgtg gccagccgag gcgcagtatc
      721 tgtacccgtt gtatcgcggc ctcaacccgg gcacgaaggg tgtgatccac gttgcgggaa
      781 ccactggtgt gagtggaacg ctgcgcggcc gtgtcacctt gtacgcgact ggtaatgtcg
      841 caatcctgcg cgatacgaaa tacgtgaccg atccatcgct cagcaattgc acggccgaca
      901 tgctcggaat catctccggc aacaatatct cactggctga caacgcgttg cagggtccgt
      961 tgaagatcgg cggcgctgtt ccctacagga acatggatga cacgaaggac gtattcgtgc
     1021 acggcgtaat gatggcgctg aatacggcgt tcggagcgga gaacttctcg atggggccga
     1081 cgaatgcgaa taactgtgaa gccacgatca acggccgcgg ctgtctgtac ctgacgggtg
     1141 gcattatcca gaagcagcgc ggcgcagtcg ggcagtccaa tggaaccggc ttcgccaagc
     1201 gttacagcta cgacaggtgt gcgctgtaca atccgccgcc gtacttcccg actacgggac
     1261 ggtacacaga caacagatac tacgagatcg atcccgctgg tttcgatgtt gcggcgctgt
     1321 accggtcgct gacgccgtaa tgagcgggtc ctgacaaaac aaaaacgatt ccgatatcac
     1381 tcgggaccgt ttttgtttga tcgcctcctg tcagcctgcg atcgtctcgc cgcccaggac
     1441 gggaagaatt gcgccgctta tgtagctgga tgtgatgttc gatgccagga agacgtatgc
     1501 cggcgccagc tcttccggct ggccgggtcg cccgaagctg acgtcggcgc cgaagtcggt
     1561 gaccttgtcg gccggcttcg ctgacggatt gagcggtgtc cagacaggtc ccggcgccac
     1621 ggcattcacg cgaattttct tctccgtgag catctgtgcc agcgtcttgg tgaatgcgtg
     1681 gatcgcaccc ttcgttgccg aataatcgag cagcgacttc tctccctcga gacccgttac
     1741 cgagccggtg ttcacgatgc tgctgccggc tttcatgttc gggaccgctg ccttcaccat
     1801 gtggaagtaa ccgtagatgt ttgtacggaa ggtatgatcc cattgctcct ccgtaacgtc
     1861 ggccagattc ttctgattct tctgataacc tgcattgttc acgagcacgt cgagcttgcc
     1921 gaatgtggaa atgacgcgat tgacggcgtc gatgcagaat ccggggtcgg tgacgtcgcc
     1981 ggggatgagc agagagcggc ggccttctcc ctcgatggct cgcgcggttt cctgagcgtc
     2041 gctctgctcc tgcggcagga atatgattgc gacgtcggca ccctcgcgcg cg
//
LOCUS       DATIMD010000272         2854 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_684537, whole genome shotgun sequence.
ACCESSION   DATIMD010000272 DATIMD010000000
VERSION     DATIMD010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_684537"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1419
                     /locus_tag="VLI40_06310"
     CDS             <1..1419
                     /locus_tag="VLI40_06310"
                     /inference="COORDINATES: protein motif:HMM:NF038032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CehA/McbA family metallohydrolase"
                     /protein_id="HSU96824.1"
                     /translation="RGYAPEGGFHRAIAATGTQYFHTTGTFDVSVPAGQTQIEALKGY
                     EYRPSSVKVDVTAGGTKSVTVRLARLVDLPARGWYSGDTHIHDLHQGRFGLTHQTFFD
                     ELRAEDLHVTNALIHMDGTRLMGRWDDLTGKPSPLSTSQYILQYAEEFRGLLGHISIL
                     GIRRFVMPLTGGVRNTSYAQPTLDAMYIDSAHAQGGIAGFPHPYYSLVTTPEQAASTL
                     IPVDAALGKGDYYDIGAIWSDELSSAEMYYRLLNCGFRIPATSGTDNFSDVWRDPPPG
                     SDRTYVHVKGALTLANWFAGIKAGHTFGSTGPLVFLDVAGREPGDEIALASSAPRTLK
                     VSANAVSIAPMSQLDILVNGKVVRSVKPSAAPDSLKLAFSDTVAIPEGGWIAARVIGP
                     SSRYIGDGYSFAQTSPVYVVRGGHQYISAEDAHFLGQAVDAVWTKEEHAPWRTDAERD
                     RFHDEIVRARAVYQRLEDGARR"
     gene            complement(1475..>2854)
                     /locus_tag="VLI40_06315"
     CDS             complement(1475..>2854)
                     /locus_tag="VLI40_06315"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HSU96825.1"
                     /translation="LADGARPDVMGAALRSRELPAIARVAEEGGVHTIATAFPSVTGP
                     AYAPFLTGQHPGSVGLPGLRWYDRAHSACRWPSYARSYIGPQCRFLDRDLADDAETMF
                     ELADSSIGALSVIRRGLSSSRRIGSGAAFVASTAITHFRGNVAGWLDIDRDIGDRFVQ
                     RVGDERPEFAFAAFTGIDKASHAFGHDSSMVHDAMRVVDDVCGRIRADAERTGNWDST
                     HLWIVSDHGHSRVTTHEDLAGVVASLGFRVVAHPWTVRRGAQIAVAVSGNAMAHIYTG
                     LESRTRQFWPSLSSDWGCVVNMLLSRESVDVMLLPLSPTSCEMRTSDRGAAVISWDHG
                     RYAYRPVTGDPLGIGEHDDMSDSDAFDVTGDCFYPDAIVQTARISSCSRSGDIILSAA
                     PDWDFRARYEPIPHVSSHGALHREHMLVPLITNRPIQGPARRTVDVMASACAVLGVTA
                     AKMEGLSFV"
BASE COUNT          567 a          938 c          846 g          503 t
ORIGIN      
        1 cgcggctatg cgccggaagg cggattccat cgcgcgatcg cggcgacggg aacgcagtac
       61 ttccacacaa ccggaacgtt cgacgtgagc gtacctgctg gacagacgca gatcgaagcg
      121 ctcaagggtt acgagtatcg cccatcttca gtgaaggtgg acgtcactgc cggtggtacg
      181 aagagcgtca cagtcaggct cgcgcgtctc gtggatcttc ctgcgcgcgg ctggtactcc
      241 ggcgataccc acattcatga tctgcatcag ggtcgtttcg gcctcacgca tcagacattc
      301 ttcgatgagc tgcgcgcgga agatctccac gtgaccaacg cactgatcca catggacggc
      361 acgcggctca tgggtcgatg ggacgacctg actggaaagc cgagtccgct atcgacgtcg
      421 cagtacatcc tgcaatacgc ggaagagttc cgcggactgc tcggacacat ctcgatactc
      481 gggatcaggc gcttcgtgat gccgctcaca gggggtgtgc gcaacacgtc ctacgcgcaa
      541 ccgactctcg acgccatgta catcgactcg gcgcacgcgc agggcggaat cgccggattc
      601 ccgcatccat actactcgct cgtaacgact ccggagcagg ccgcgagcac gctcatcccc
      661 gtcgacgcgg cacttggaaa gggtgactac tacgacatag gtgccatctg gtccgacgag
      721 ctgtcatcgg cggagatgta ttatcgcctg ctcaattgcg gatttcgaat tcccgccacg
      781 tcgggtacgg acaacttctc cgacgtatgg cgcgacccgc caccaggctc tgaccgtaca
      841 tacgtgcacg tgaagggcgc gctcacgctc gccaactggt tcgccggcat caaggccggt
      901 catacattcg gttccacggg cccgctcgta tttctcgacg tcgcgggacg cgaacccggt
      961 gacgagatcg cgcttgcatc cagcgcaccg cgcacgctca aggtgagcgc caatgcagta
     1021 tcgatcgctc cgatgtcgca actcgacatt ctggtcaacg gcaaggtagt gcggagcgtc
     1081 aagccgtcgg ccgcaccgga ttccttgaag ctggcattca gcgatacggt tgcgatccct
     1141 gagggcggat ggatcgcagc gagagtgatc ggtccatcgt cacgctacat cggtgacggt
     1201 tactccttcg cgcagacgag tccggtgtac gtagttcgcg gcggccacca gtacatctca
     1261 gccgaggatg cgcactttct tgggcaggca gtggatgctg tgtggacgaa agaggagcac
     1321 gcaccgtggc gcacggatgc ggaacgagat cgttttcatg atgaaatcgt gcgcgcacgc
     1381 gccgtgtatc agcggctgga ggacggggcg aggcggtaaa tttgtgccgg aatgcaagac
     1441 gcccaccaat cccgcgcgct gatccaaccc catcctacac gaacgacaac ccttccatct
     1501 tcgccgccgt gacacccagc acggcgcaag ccgacgccat cacatccacc gtccggcgcg
     1561 caggaccctg aatcggccga ttggtaatca gcggcaccag catgtgctcc cgatgcaacg
     1621 ctccgtgcga cgagacgtgc gggatcggct cgtagcgcgc ccggaaatcc caatcaggtg
     1681 ccgctgacag tatgatgtca ccgcttcgcg agcatgatga gatccgggct gtctgcacta
     1741 tcgcgtcagg atagaaacag tcaccagtga cgtcgaatgc atcgctgtcg ctcatgtcat
     1801 cgtgctcgcc gatgccgagc gggtcgcccg tgacagggcg atatgcataa cgcccgtgat
     1861 cccatgagat caccgcagcg ccgcgatcgc tcgtccgcat ctcgcacgac gtgggtgaca
     1921 gcggaagcag catcacgtcg accgactcac gactcagcag catattcacc acacaacccc
     1981 aatcgctgct gagcgacggc cagaactgtc gcgttctgct ctcgagtccc gtgtagatgt
     2041 gcgccatcgc gttgccactt acggctaccg cgatctgagc gccgcgccgg acggtccacg
     2101 gatgcgccac gactctgaaa ccgagcgacg caactacgcc cgcaagatct tcatgcgtcg
     2161 tgacgcgcga gtgtccgtgg tcgctcacga tccacaggtg cgtcgaatcc cagttgcccg
     2221 tgcgctcggc gtcggcgcgg attcgtccgc acacgtcgtc aaccacacgc atcgcatcgt
     2281 gcaccatcga cgaatcatgt ccgaatgcgt gcgacgcctt gtctatcccc gtgaacgctg
     2341 cgaatgcaaa ctccgggcgt tcgtctccga cgcgttgcac aaacctgtcg ccaatgtcac
     2401 ggtcgatgtc cagccagccc gcaacgttgc cgcgaaagtg cgttatcgcc gtgctcgcga
     2461 cgaacgcggc gccgctcccg atccgcctcg atgacgacag cccacgccga atcacgctga
     2521 gcgcaccgat actcgagtcg gccagctcga acatcgtctc cgcgtcgtca gccagatcgc
     2581 gatccagaaa gcgacactgg ggaccgatgt agctgcgcgc atagctcggc catctgcacg
     2641 ccgagtgcgc gcgatcgtac catcggaggc ctggcaggcc caccgatccg ggatgctgac
     2701 ccgtaaggaa cggcgcgtac gccggccctg tcaccgaagg aaatgcggtc gcgatggtgt
     2761 gaacgccgcc ctcttcagcg acgcgcgcaa tcgctggaag ctcgcgcgat cgcagtgcgg
     2821 cgcccattac atccggacgt gcgccgtcgg ccag
//
LOCUS       DATIMD010000273         4107 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2413085, whole genome shotgun sequence.
ACCESSION   DATIMD010000273 DATIMD010000000
VERSION     DATIMD010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4107
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2413085"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1374
                     /locus_tag="VLI40_06320"
     CDS             <1..1374
                     /locus_tag="VLI40_06320"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSU96826.1"
                     /translation="ATDHKVSAAVVFGGTLGDTTKELTADQAKGKIVVMMAPAGGGRG
                     FFRRAPGSANPLADAEAIVTVAEILPKPRFQPVLNDTVQNEGREAYAASHPNEANARG
                     RGGFGGAGLNITVTPQVASALLGKSVESAALGDAGPSATIDIHVKNAAAPTRSVVAIL
                     PGTDPKLSKEYIVIGAHADHIGVSGARPVVEHDSLKAYNEVARVEGADTRNAPEPTAE
                     QWVRINAIKDSLRKIYPPRLDSISNGADDDGSGSVSILEIAQAFAQGHVKPKRSLIFI
                     WQMGEEKGLWGSEWFTNHPTVPRDSIIADLNLDMVGRGAATDITGKNKAGEELKGASN
                     YLQLVGSRRLSTELGDIAESVDSSETVPFKFDYSMDANGHPQNIYCRSDHANYARYGI
                     PVIFFTTGGHADYHQVTDEPQYIQYEHMARVDKLVFDIAERVANLDHRVVVDKTKPDS
                     PFARCQQ"
     gene            complement(1508..3583)
                     /locus_tag="VLI40_06325"
     CDS             complement(1508..3583)
                     /locus_tag="VLI40_06325"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HSU96827.1"
                     /translation="MAPSTRVRARIAVVASSFAATLALSLTAVAQQPSVRPANHISLD
                     QYLDWEDVQNPQLSPDGAQILFTRRWVDKMNDKWESSIWLMNADGSHQRALAQGSDMK
                     WSPDGKRIAYVAKGEPVGQQIFVRYMDAEGGTTQISHLTDAPSALEWSPDGRTIAFNM
                     NVPVHDTWHIAMPTPPKGAKWIDPPKIVTRLNYRSDRIGYTDDYFRHIFVIPADGGTA
                     RQISRGDWNYSAANFSADGKWLVYSGLFEPNAEMAYRKSNVYLANVETGATKQLTHRN
                     GTSAQPLFSPDGKAIAFISADSGDHSAWAEGRLYMMNADGSNVHAVSGDLDRPITGVM
                     WAPDNSGIYFNVESSGSKNMYFASTAGQFRPVTSGAQVLTVSDVGKNGLVVGVRSTPT
                     KPNDVVSFKLPRSGTTSAFTQLTAVNDDILAGKDLAQTEEISYTSKDGLRIQGWIVKP
                     PGFDPARKYPLILDIHGGPQSMYNVAFSFARQDHAAAGYVVLYTNPRGSTGYGAKFTN
                     EIKNAYPGKDFDDLMAGVDTVVGRGYIDQKNMFVYGCSGGGVLTSWTVGHTNRFAAAA
                     ALCPVIDWISFVGETDGASWYGNFEKPFWEDPSEYLRRSPIMYVGNVKTPTMLMTGVL
                     DLRTPIPQIEEFYRALRMHGVPTVMIRMNNEYHGTSSTPSNFLRTQLYLRSWFEKYGA
                     KDGTLAMTQ"
     gene            3706..>4107
                     /locus_tag="VLI40_06330"
     CDS             3706..>4107
                     /locus_tag="VLI40_06330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96828.1"
                     /translation="MSQHFAIACTALVLTLVAAPAAGAQGSACNVPAKDPIVQLDMIG
                     TPFEPVISADGCWIFVTLTQGDGANGGGVAVVRRTSGSLSVARTISIQGNPTGAVLTR
                     DGKLLVVADGGYIGFVDATRLESGDGNPVLGY"
BASE COUNT          789 a         1223 c         1289 g          806 t
ORIGIN      
        1 gcaactgacc acaaggtgtc cgccgcagtc gtcttcggtg gaacgctcgg cgatacgaca
       61 aaggagctca ctgcggatca ggccaagggc aagatcgttg tgatgatggc gccagcaggt
      121 ggcggacgcg gctttttccg ccgcgcgcct ggcagcgcca atccgctggc tgacgctgag
      181 gcgatcgtca cagtcgcgga gatccttccc aagccgcgct ttcagccagt gctcaacgac
      241 accgtccaga acgaggggcg ggaagcgtat gctgccagtc atccgaacga agccaacgca
      301 cgtggccgcg gtggattcgg tggcgccggt ctcaacatca ccgtaacgcc gcaggtcgcg
      361 agcgcactgc tcggcaagtc cgttgaaagt gccgccctcg gtgacgcggg accatctgcg
      421 acgatcgaca ttcacgtgaa gaacgcagcg gcaccgacgc gcagtgtcgt cgctattctg
      481 cccggtaccg atcccaagct cagcaaggaa tacatcgtga tcggcgcgca cgcggatcac
      541 atcggcgttt cgggcgcgcg ccccgtcgtc gagcatgact cgctcaaggc gtacaacgaa
      601 gtggcgcgcg tcgaaggcgc cgacacgcgc aacgcaccgg agccgacggc cgagcagtgg
      661 gtgcggatca atgcaatcaa ggactcgctt cgcaagatct atccgccgcg actggactcg
      721 atcagcaacg gcgcggatga cgacggttca ggatcggttt ccattctcga gatcgcgcag
      781 gcgttcgcac agggacacgt caagccgaag cggtcgttga tcttcatctg gcagatgggt
      841 gaggagaagg gactgtgggg ctcggagtgg ttcacgaatc atccgacggt gccgcgcgat
      901 tccatcatag cggatctcaa tctcgacatg gtcggacgcg gtgctgcgac cgacatcact
      961 ggcaagaaca aggctggcga ggagctcaag ggcgcgagca attatctgca gctcgttgga
     1021 tcacgtcgtc tgtccactga gctcggtgat atcgccgaga gcgtggacag cagcgagacc
     1081 gttccgttca agttcgatta ttcgatggac gcgaacggac atccgcagaa catctattgc
     1141 cgcagcgatc acgccaacta tgcgcggtac ggcatcccgg tgatcttctt cacgaccggc
     1201 ggtcacgcgg actaccatca ggtgacggat gagccgcagt acatccagta cgagcacatg
     1261 gctcgcgtcg acaagctcgt gttcgatatc gccgagcgtg tggcgaatct ggatcatcgt
     1321 gtggttgtgg acaagacaaa gccggacagt ccgtttgcac ggtgtcagca gtagcgacat
     1381 caggtagaga catcaggtag acaacgagcg gctgcagtaa aacagctccg gcatcgatct
     1441 ctcgatgccg gagctgtttg ctgaatacgc cgtgcggaag gcgcaactct ccaccacgca
     1501 tcgtccgcta ctgcgtcatt gccagcgtgc cgtccttcgc tccgtacttc tcgaaccagc
     1561 tgcgcagata gagctgtgtg cgcagaaagt tggacggcgt gcttgacgtg ccgtggtact
     1621 cgttgttcat ccggatcatc acagttggca ctccgtgcat cctgagcgcg cgatagaatt
     1681 cctcgatctg cgggatcggc gtgcgaaggt ccagtacgcc ggtcataagc atcgtcggcg
     1741 tcttcacgtt gccgacgtac atgatcggtg agcggcgcag gtactccgac gggtcttccc
     1801 agaacggctt ctcgaagttg ccataccagc tggcaccatc ggtctccccg acaaagctga
     1861 tccagtcgat cacgggacag agcgctgccg cagcggcgaa ccggttggtg tggcccacgg
     1921 tccacgacgt gagcacgccg ccaccggagc agccgtatac gaacatgttc ttctgatcga
     1981 tgtagccgcg gccgaccact gtatcgacac ctgccatgag gtcgtcgaaa tccttgcctg
     2041 gatacgcgtt cttgatctcg ttggtgaact tggcgccgta gccggtactg ccgcgcgggt
     2101 tggtgtacag aactacgtag cctgccgctg cgtgatcctg ccgcgcaaaa ctgaatgcga
     2161 cattgtacat cgactgcggg ccaccgtgaa tgtcgaggat aagcggatat ttcctggccg
     2221 gatcgaagcc tggtggcttc actatccagc cctgaatcct gagcccatcc ttcgacgtgt
     2281 acgagatctc ctcggtctgc gcgagatcct tgcccgcgag aatgtcgtca ttcaccgcgg
     2341 tgagctgcgt aaacgccgat gtcgtgccgc tccttggcag cttgaacgat acgacgtcgt
     2401 taggcttggt cggtgtcgag cgcacgccga cgaccagacc gttcttccct acatccgaca
     2461 cagtgagcac ctgtgcaccc gatgtcacgg gacggaattg accggccgtt gacgcgaagt
     2521 acatgttctt ggagcccgag ctctcgacgt tgaagtagat gccgctgttg tcaggcgccc
     2581 acatcacacc ggtgatcggc cgatccagat cgccagatac tgcatgcaca ttcgagccgt
     2641 cggcattcat catgtacaac ctgccctcgg cccaggctga gtggtcgcct gagtcggcgg
     2701 agatgaaggc gatcgccttg ccgtctggcg agaagagtgg ttgtgcgctg gtgccgttcc
     2761 ggtgggtcag ctgcttcgtc gcgccggttt ccacgttcgc gagatacacg ttcgacttgc
     2821 gatacgccat ctcggcgttc ggctcgaaca atccggaata cacgagccac ttgccgtcgg
     2881 ccgagaagtt ggcagcagag taattccagt cgcctctgga gatctggcga gcggtcccgc
     2941 cgtcggcggg aatgacaaat atgtggcgga aatagtcgtc ggtgtatccg atgcgatcgg
     3001 atcgatagtt gagtcgtgtc acgattttcg gcggatcgat ccacttggcg cccttgggcg
     3061 gcgtgggcat tgcgatgtgc cacgtgtcgt gcaccggaac gttcatgttg aacgcgatgg
     3121 tcctgccgtc cggtgaccat tcgagcgccg atggagcgtc ggtcagatga gagatctgcg
     3181 tcgtgccccc ttccgcgtcc atgtagcgga cgaagatctg ctgtccgacg ggctcgccct
     3241 tcgctacgta cgcgatgcgc ttgccatcgg gcgaccactt catgtccgag ccctgcgcga
     3301 gcgcgcgctg gtgcgatccg tcggcgttca tcaaccagat ggacgactcc cacttgtcgt
     3361 tcatcttgtc gacccagcgg cgtgtgaaga ggatctgcgc tccgtcgggc gacaactgcg
     3421 ggttctgcac gtcttcccag tcgaggtatt gatcgagcga gatgtgattc gcgggacgaa
     3481 cggacggctg ctgtgcgacg gcagtcaggg agagcgcgag cgttgcagcg aagctggaag
     3541 ccacaaccgc gatacgtgcg cgaacacgag tggacggggc catgttgtct ccgacaagag
     3601 tgagcgtcct ggcgagacta taatcgccta tccgaaggag aggcaccaga ggccggcctt
     3661 tgagggcgcc gccactcgcg cggcggcgcg ctacattggt gcgccatgag ccagcatttc
     3721 gctatcgcgt gcactgctct cgtgctaacg ctcgttgcgg cgccagcggc cggcgcccag
     3781 ggcagcgcct gcaacgtgcc ggcgaaagat ccgatcgttc aactcgacat gatcggcaca
     3841 ccattcgagc cggtcatctc tgcggacggt tgttggattt ttgtcacgct tacacagggc
     3901 gacggcgcga atggtggagg tgtcgcggtc gtgcggcgca cgagcggttc gctctccgtc
     3961 gcacggacga tttcgatcca ggggaatcca acgggtgcag tgctcacgcg cgatggaaag
     4021 ctcctcgttg tcgccgacgg cggatatatc ggtttcgtcg acgccactcg actcgaatcg
     4081 ggtgacggca acccggtgct cggctat
//
LOCUS       DATIMD010000274         4998 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1262791, whole genome shotgun sequence.
ACCESSION   DATIMD010000274 DATIMD010000000
VERSION     DATIMD010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4998
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1262791"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1129)
                     /locus_tag="VLI40_06335"
     CDS             complement(<1..1129)
                     /locus_tag="VLI40_06335"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative peptidoglycan glycosyltransferase FtsW"
                     /protein_id="HSU96829.1"
                     /translation="MAEAVQHVRYRWHMTWEARVLTMLTLVLLAFGLVTVYSASSIVA
                     LQAGHNGAYYMLRQLSGIVLGLVFFAVAAKTDAEKWYDWAWPVMIGCLILLVVVVLPF
                     TVRWAPRIHGARRYLFGGSVQPSELAKLAVIVWTAMLVVKKGDAMRRLSKGLFPFLVI
                     VGLMDTLVYVEPDLSSAMFYTLIMGIILFAAGVRIGHFVALVAIAIPALYSKAEKLQY
                     VMLRMTAFFNPGVTPHVDYQARQSLIAIGSGGLLGVGFGQGRQQYGFLPFAYDDFIAA
                     NIGEERGFIGLALLVLGFAAYAYLGFRIARAARSKFQQLVAVGIVATVVISAFLHIGV
                     TIGLLPNTGLALPFVSYGRSSMLLTLLLTGILVNIGSERERV"
     gene            complement(1122..2501)
                     /gene="murD"
                     /locus_tag="VLI40_06340"
     CDS             complement(1122..2501)
                     /gene="murD"
                     /locus_tag="VLI40_06340"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HSU96830.1"
                     /translation="MTAQAMLPPSAGEVVVIGLGRSGVAATQLLRQRGYTVYACDDGT
                     SSRLTEVAQKLAALGASVQTGGHDSGRVARAALVVASPGVPPDAPALVAAMNASREVV
                     SEIELALRCAPDLRYIAITGTNGKTTTTALIGHLLRGLGVTAPDAGNIGTPLSEIALA
                     DPVPDWISLELSSFQLHDTPSIAPDVGVLTNLSADHLDRYAAVSDYFADKALLFRNAT
                     SASRWVLNADDPVSLDMARGVAGTQLHFSIAKPSDAWYDRAADSLVVFDAPLLARADL
                     RLLGDHNVANALAASLAVMAASSDYRTPEARRAIADALRTFRAMPNRLEVVGEWNGIE
                     WINDSKATNVASTLVAVQGMTRPTVLLLGGRHKGEPYTALSRPIAQHVRHVIAFGEAA
                     PIVQHDLANGAPLTRVDGTFEEVIAAARGVAQRGDAVLLSPACSSYDMFNNYVERGER
                     FRELARADG"
     gene            complement(2498..3640)
                     /gene="mraY"
                     /locus_tag="VLI40_06345"
     CDS             complement(2498..3640)
                     /gene="mraY"
                     /locus_tag="VLI40_06345"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HSU96831.1"
                     /translation="MLNYLLVPLSPYLGFLRLFNYISFRAAGAAVTALLLSFLVGPVI
                     IRALKRNRIAQVVRAGTPDSHAGKSNTPTMGGLIILIAAIVPTLLWARLTNRYIWVCV
                     FVMLWMGGIGFLDDYLKLRQKARGEANRGLIERYKLTGQIALGLALGLYVWHFPISNL
                     PGASTTLPFYKYVLIIPLSPAFAWLYVLFVTFVMTGTSNAVNMTDGLDGLATGLVAIA
                     ALTFAGFAYVIGRVDLSHSLGLFFMSGAGELTVFCASILGACIGFLWFNTHPAEIFMG
                     DTGSLALGGALGAIAVLLKSEFLLVFVGGLFVAEMVSVILQRYVFKYRKKRYGVEFAR
                     EHRVFRRAPLHHHFEMKGWTESQVVVRFWIIGILCAFLAFSTLKLR"
     gene            complement(3634..>4998)
                     /gene="murF"
                     /locus_tag="VLI40_06350"
     CDS             complement(3634..>4998)
                     /gene="murF"
                     /locus_tag="VLI40_06350"
                     /inference="COORDINATES: protein motif:HMM:TIGR01143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HSU96832.1"
                     /translation="KLTEEFWTGDRLAHALEERVATHAPRGSHLLGNVSTDTRALRPG
                     DIFVALVGERFDAHDFLADAVAAGAHVLVVSRAVELGRFDIPVYLVDDTLVALGDLAR
                     FKRLAWGGPVIAVAGSNGKTSTKELLRSALESRLAVHATTGNLNNRIGVPLTLLALPA
                     ASDVAIIEIGTSIPGEVATLRDIARPDVAIVTSIAEEHLEGFGDLAGVLREEASVFHD
                     VAVGIVPSNDEDLISAASPLRLVTAGLDEGDVHATSWELEKDGTGTATVNGVVVHSPL
                     RGAHNLRNLMLALAAAREVGVGVEEAARGIASLTPPPMRANWQKIGRALIINDAYNSN
                     PGSAMAAIDMLSAAPGMQKVAVLGSMLELGANSDRCHDDVARAVVAAPVALIGGMGEF
                     ATALRRVAPQDKRIVVANDVDQLWSELAPQLAEDATILLKASRGAKLERILPHITSWA
                     NHDC"
BASE COUNT         1029 a         1549 c         1544 g          876 t
ORIGIN      
        1 tcacgcgctc gcgctcactc ccgatattga ccaggattcc tgtcagcaga agggtgagca
       61 gcatgctgga acggccgtat gatacaaacg gaagagcgag tcccgtattc ggcagcagtc
      121 cgatcgtgac gccgatgtgg aggaaggcgc tgatcacgac cgttgcgacg atgcccactg
      181 cgaccagctg ctggaacttg gaacgcgcgg cgcgagcgat ccggaagccg agataggcgt
      241 aggccgcgaa tccaaggacc agcagagcga gcccgatgaa gccgcgctcc tcgccaatgt
      301 tggctgcgat gaagtcgtcg tatgcaaatg gaaggaatcc gtactgttgc cttccctgcc
      361 cgaacccaac cccgagcaga cctccggagc cgatcgcgat gagcgactgg cgggcctgat
      421 agtcgacatg tggagttacg cccgggttga agaatgcggt cattcgcagc atcacgtact
      481 gcagcttctc cgctttggaa tacagcgccg ggattgcgat cgccacgagt gctacgaagt
      541 gaccgatacg cacgccggcc gcgaacagaa tgattcccat gatcagcgtg tagaacatcg
      601 ccgatgacag atccggctcg acgtatacaa gcgtgtccat gaggccgacg atcacgagaa
      661 acggaaacag acccttgctc agacgccgca tcgcgtcgcc tttcttgacc acgagcatcg
      721 ccgtccagac gatgacggcg agcttcgcca gctcggacgg ctgcacgctt ccaccaaaca
      781 ggtatctgcg tgcgccatga attctgggag cccagcgaac ggtgaatgga agcacgacga
      841 caacgagcag gatgagacac ccgatcatca ccggccacgc ccagtcatac catttttcgg
      901 cgtcggtctt tgctgcgacg gcgaagaaca cgagtccgag gacgatacca ctcaactggc
      961 gcaacatgta gtatgcgcca ttgtgaccgg cctgcagtgc aactatgctg ctcgcgctgt
     1021 aaaccgtgac gaggccgaac gcgagcagga cgagcgtgag catggtgagg acacgcgcct
     1081 cccacgtcat gtgccagcga taccttacgt gctggaccgc ttcagccatc ggcgcgcgcc
     1141 agctcgcgga accgctcacc acgctccacg tagttgttga acatgtcgta gctggagcat
     1201 gcgggtgaca agagaaccgc atcgccccgc tgcgcgaccc cgcgtgcagc agcgatcact
     1261 tcttcgaatg ttccgtcgac gcgcgtaagc ggggcaccgt ttgccagatc gtgttgtacg
     1321 atgggcgctg cctcaccgaa cgcgatcacg tgcctcacgt gctgagcgat aggccgtgag
     1381 agtgcggtgt atggctcacc cttgtgccga ccgccgagca acagaacagt cggtcgggtc
     1441 atcccctgga cggcgacgag agtcgaagca acgttggtgg ccttggagtc gtttatccac
     1501 tcgatcccgt tccactcgcc aaccacttcg agccggttgg gcatcgcgcg aaatgttcgg
     1561 agcgcgtccg ctatcgcgcg gcgtgcctcc ggcgtgcgat agtcgctgga tgcggccatc
     1621 acggccagcg acgcagccag tgcgttcgca acgttatggt cgccgaggag ccgcaggtcg
     1681 gcgcgcgcaa gcagtggtgc gtcgaacacg acgagcgaat cggcggcgcg atcgtaccat
     1741 gcgtcggacg gtttcgcgat gctgaagtga agctgcgtac ctgcgacgcc gcgcgccatg
     1801 tcgagcgaaa cggggtcatc cgcgttgagc acccagcgcg acgccgacgt tgcgttgcga
     1861 aacagcagtg ccttgtcggc aaagtagtcg ctcacagccg catagcggtc cagatgatcg
     1921 gcactcagat tggtgagtac tccaacatcc ggtgcgatgc tcggcgtgtc gtgaagctga
     1981 aacgaggaaa gctcgagcga tatccagtcg ggcactggat cggcgagcgc aatctccgac
     2041 agcggtgtgc cgatgttgcc tgcatccggt gcagtcacgc cgaggccgcg aaggagatgc
     2101 ccgatcagag ctgtggtcgt ggtcttgccg ttcgttccgg tgatcgcgat atacctgagg
     2161 tccggcgcgc agcggagcgc gagctcgatc tcgctcacga cttcgcgcga ggcgttcatc
     2221 gcagcgacaa gcgctggtgc atcgggtggc actcccggac tcgcaacgac cagcgccgcg
     2281 cgtgctacgc gaccggaatc atggcctccg gtctgcacgc tagcgcccag cgccgcgagt
     2341 ttttgcgcga cttcggtcaa cctggaggac gtgccgtcgt cgcacgcgta caccgtgtat
     2401 ccgcgttgtc tgaggagctg cgtcgcggcg acgccgctgc gtcccagccc gatcacaacc
     2461 acctcgcccg ccgatggcgg gagcatcgcc tgcgcggtca tctcagtttg agtgtgctga
     2521 atgcgaggaa tgcgcagagg atgccgatga tccagaacct caccaccacc tgcgattcag
     2581 tccagccctt catctcgaag tgatgatgca gcggagctct gcgaaacacg cggtgctcgc
     2641 gcgcgaactc gacgccgtat cgtttcttcc ggtacttgaa cacgtaccgc tgcaggatca
     2701 ccgagaccat ctccgcgacg aacaacccgc cgacgaagac gagcaggaac tccgatttca
     2761 acagtactgc aatggcgccg agcgcgccgc cgagtgcgag cgaaccagta tcgcccatga
     2821 aaatctctgc cggatgcgtg ttgaaccaga ggaatccgat gcaggcaccg aggatggatg
     2881 cgcagaaaac cgtgagctcg cccgcgccgc tcatgaagaa gagaccgagc gagtggctca
     2941 gatcgacgcg tccgatcacg tacgcgaaac cggcaaacgt aagcgcggca atggcgacca
     3001 acccggttgc gagtccgtcg agaccatcgg tcatgttcac agcgttgctg gtgcctgtca
     3061 tcacaaaagt tacgaacaga acgtagagcc acgcgaacgc gggagacagc ggaataatca
     3121 gaacgtactt gtagaacggc agcgtcgtgg acgcgcccgg aagattcgaa atcgggaagt
     3181 gccagacgta gagaccaagt gcgaggccaa gcgcgatctg gccggtgagc ttgtaccgct
     3241 cgatcaaccc gcggttcgcc tcaccgcgtg ctttctggcg aagcttgagg tagtcgtcga
     3301 ggaatccgat tccacccatc cacaacatca caaacacgca gacccagatg taccggtttg
     3361 tgaggcgcgc ccacagcaga gtcggaacga ttgccgcgat aagtattatg agaccgccca
     3421 tcgtgggcgt gttcgacttg ccagcgtggc tatccggcgt ccctgctctc accacctggg
     3481 cgatacgatt gcgcttcagc gcgcgtatta tcaccggtcc cacgaggaac gacagcagaa
     3541 gtgcggtaac ggccgctccg gccgcgcgga agctgatgta gttgaatagc cgcaggaatc
     3601 cgaggtatgg actgagcgga acaaggaggt agttcagcaa tcgtggttcg cccagctggt
     3661 tatgtgtggt aggatgcgct cgagtttcgc accgcgagac gccttcaaca atatggtcgc
     3721 atcctccgcc aactgcggag cgagctccga ccagagctgg tcgacgtcgt tcgcgaccac
     3781 gatccgttta tcctgcggag cgacgcgccg aagtgccgtt gcgaactcgc ccattccacc
     3841 gatgagagcc acaggagccg cgacgaccgc gcgcgcaaca tcgtcgtgac agcgatccga
     3901 atttgcgccc agctcgagca tcgagccgag gaccgcgact ttctgcatac ccggtgccgc
     3961 agacagcatg tcgatcgccg ccattgcaga gccgggattt gaattgtacg cgtcgttgat
     4021 tatgagcgca cgtccgatct tctgccagtt ggcgcgcatc ggtggcggcg tgagcgatgc
     4081 gatacctcgc gccgcctcct ccacgcccac gccgacttcg cgcgccgccg cgagtgccag
     4141 catcagattc ctgagattgt gtgcaccgcg caacggtgaa tgcactacca cgccgttaac
     4201 agttgccgtt cccgttccgt ctttctcgag ttcccatgaa gtagcgtgga catctccctc
     4261 gtcaagccca gccgttacga ggcgcaaggg cgaagcagcc gatatgagat cctcatcgtt
     4321 cgagggaact atgcctacgg cgacatcatg aaacacggat gcttcctcgc gaagcacacc
     4381 ggcgagatcg ccaaaccctt cgagatgctc ttcggcgata gacgtgacga tggcgacgtc
     4441 cgggcgtgcg atgtcgcgca gcgtcgcgac ctcacctgga atgctcgtac cgatctcgat
     4501 gatcgcgacg tcggacgcgg cgggcagcgc gagcagtgtc agcggcacgc cgatgcggtt
     4561 gttgaggttg ccggtagttg catgcaccgc gagacgcgac tccagtgccg atcgcaacag
     4621 ctccttggtg ctcgtcttgc cgttgcttcc ggcgaccgcg atcacgggtc cgccccacgc
     4681 gagccgtttg aagcgcgcga gatcgccaag tgcgacaagc gtatcgtcga cgagatagac
     4741 cggaatgtcg aagcggccga gctcgacggc gcggctgacg accagcacgt gtgcgccggc
     4801 agcaacggcg tccgcgagaa agtcgtgcgc atcgaagcgc tcgccaacga gcgcaacgaa
     4861 tatgtcgccc ggccgaagcg cgcgcgtatc tgtcgacacg tttccgagaa ggtgcgagcc
     4921 gcgtggtgca tgcgtcgcga ctcgctcttc gagtgcgtgc gcgagccgat cgcccgtcca
     4981 gaattcttcg gtcaactt
//
LOCUS       DATIMD010000275         1676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_106029, whole genome shotgun sequence.
ACCESSION   DATIMD010000275 DATIMD010000000
VERSION     DATIMD010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106029"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..295
                     /locus_tag="VLI40_06355"
     CDS             <1..295
                     /locus_tag="VLI40_06355"
                     /inference="COORDINATES: protein motif:HMM:NF021357.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chromate resistance protein ChrB
                     domain-containing protein"
                     /protein_id="HSU96833.1"
                     /translation="DELRFDMFDAEYTHIGAACTFEVLLDTFALRNDVGLSSIAEIVH
                     DIDCKDDLFGRAETGDVAHALDELYAQHRSDEARLNHGGLLFENLYWMLRLAR"
     gene            367..1467
                     /locus_tag="VLI40_06360"
     CDS             367..1467
                     /locus_tag="VLI40_06360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HSU96834.1"
                     /translation="MSNHSITRRSAVSLIGAILALVSTSPSLHALQDRPVSCSATPTS
                     LTPANYHRVLPSTRAPASSDLRLVKEMPLPGPASRFDYQSFDPTTRTLYMNHMNAGET
                     LVFSTDSDRVMGRIPGVPRATGVLAIPSLHRVYVSAAGAHEVVGVDDRTLKVVQRVGG
                     IQFPDGIAYDPEVGKLFVSDESGSADVVIDVATGRKLATIALGGEAGNTHYDSVSHCV
                     LVAVQTRNQLVAIDPVSEKIAGRYELPGSEHPHGFALDQPGRLLFMSCEGNAKLLVLD
                     LTTMRVIGTHDVGDGPDVLAWDAAWRRLYVASEGGVLSAFWADGTTLRPAGEYRAPHA
                     HTVGLDSRTHRLYLPLQDIGGRPILRVLAPAG"
BASE COUNT          324 a          494 c          509 g          349 t
ORIGIN      
        1 agacgagctg cggtttgaca tgttcgacgc tgaatacaca catattggag ccgcgtgcac
       61 gttcgaggtg ctgctggaca cattcgcgct tcgaaatgac gttggcctga gctcgatcgc
      121 cgagatagtg cacgacatcg attgcaagga tgatctgttc ggacgcgctg agacaggcga
      181 cgtggcccat gcgctggacg aattgtacgc acagcatcgc tctgacgaag cacggctgaa
      241 ccacggcggc ttattgttcg agaatcttta ctggatgctg cgccttgctc gatgacatca
      301 acgggatgga gccgatccga tggctcgatg ccgcgaacgt ttcctaccca ggtcgacaga
      361 ggagttatga gcaatcactc gattaccaga cgctcggcgg tttcgctcat cggtgcaata
      421 ctggcacttg tttcgacgag cccttctctc catgccttgc aggacagacc ggtgtcatgc
      481 tctgcaacac cgacgtcact cacgccggcg aattatcatc gcgtgcttcc ctcgacccgc
      541 gcgccggcga gctccgatct ccgtcttgtg aaggagatgc cgctaccggg acctgccagc
      601 cgcttcgact atcagagctt cgatccgact acacgcacgt tgtacatgaa ccacatgaac
      661 gctggagaga cgctcgtatt ttcgactgac agcgatcgcg taatggggcg aattcccgga
      721 gtgccccgcg cgacgggcgt tctggcgatt ccgtcgctgc acagagtgta cgtgtcggcc
      781 gcgggtgctc acgaagttgt cggagtggac gatcgaactc tcaaagtggt tcagcgagtt
      841 ggcggtattc aattccctga tgggatcgcg tacgaccccg aggtcggaaa actctttgtg
      901 tccgatgagt ctggcagcgc agatgtcgtg atagacgtgg ccaccggcag gaagctcgcc
      961 accattgcac tcggcggcga ggctggcaat acgcattacg attccgtctc tcactgcgtt
     1021 ctggtcgcgg tgcagacgcg gaatcaactc gtggccatcg atcccgtgag cgagaagatt
     1081 gcagggcgtt acgagttgcc cggatcggag catcctcacg gtttcgcgct cgaccaaccc
     1141 ggccggcttc tgttcatgtc gtgtgaagga aacgcaaagc tgctggtgct ggatctcacg
     1201 accatgcgcg tcattggaac gcacgatgtt ggcgacggtc ccgacgtgct ggcgtgggat
     1261 gcagcgtggc gccgattgta tgtcgcttcc gaaggtggtg tgttatcagc tttctgggca
     1321 gatggaacga cgctccggcc ggccggcgag taccgtgcac cgcacgcgca cacggttggg
     1381 ctcgattcac gcacacaccg tctgtacctt ccgctgcagg acatcggcgg ccgtcccata
     1441 cttcgcgttc ttgcgcctgc tggttagcgc aactttgaaa cgccagcgac aactgttacg
     1501 caggtctcag cggcgcggcg ccggaaagcc gggaatccgg ccgacattat acgtgagccc
     1561 tgcatacgcc gcattgccgc ccatgtgctg aacgttcagg atcactcccg catcgagcac
     1621 cagccacgga tggacttgca gcgtggggcc cgtgaggaag ccaacctgcg gcggtg
//
LOCUS       DATIMD010000276         2280 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2993049, whole genome shotgun sequence.
ACCESSION   DATIMD010000276 DATIMD010000000
VERSION     DATIMD010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2280
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2993049"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..825
                     /locus_tag="VLI40_06365"
     CDS             <1..825
                     /locus_tag="VLI40_06365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96835.1"
                     /translation="LHAGFLGNWRVTVLATHLHIALLGWVLVMIVGISHRLLPMFLLA
                     HGADTRWTSRALALLASGVVVLALGIMTGHSVKPNIVAWMGLLLVESGIFCFLRQAWL
                     FFKVRKRPRLDAGLRHAATALVFLAGSAALAPVVLAARSEYRRLDTAYVMLGLLGGLT
                     LYAIGQFYKIVPFLTWMARFREDMGKKRVPTVAQLYSPLVAHIDLALFAIAIPGMAIG
                     VITGIVPMVRLAAILFVAGAGLFVSQIARVTFGTSFGTSFGNVEAGTGQPTTAKAS"
     gene            825..1688
                     /locus_tag="VLI40_06370"
     CDS             825..1688
                     /locus_tag="VLI40_06370"
                     /inference="COORDINATES: protein motif:HMM:NF021520.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2249 domain-containing protein"
                     /protein_id="HSU96836.1"
                     /translation="MNTSATPVQASDKLQSLFERDERLIDVVASHSPQLAKLRHSPMR
                     RIMARVTTVAQAARLCKMSVDSLVHDLNHAIGIDTAPGDTTSGNATDASDETAAAQWS
                     IPSSVSVVELDVREELSKGGEPFSRIMGAVGGLGEREVLHLRAPFEPVPLFAVMQKRG
                     FAHRTEQHADDDWSVWFFRQEMAAEFPTTATTAAQPADVTTPNPPTPGAENAPARTEV
                     WLDVRDMEPPEPLVRTLEALESLPADSMLVQRNMRVPQFLLPILRERGFHFTIDEPQS
                     NEVHVRIWRAE"
     gene            1755..2012
                     /locus_tag="VLI40_06375"
     CDS             1755..2012
                     /locus_tag="VLI40_06375"
                     /inference="COORDINATES: protein motif:HMM:NF021520.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2249 domain-containing protein"
                     /protein_id="HSU96837.1"
                     /translation="MSQSTAPQSGNGPVELDVRVIPPRDKHPTIFRTFDGLKKGQSMI
                     LINDHDPRPLRYQLDAEHPGTFEWTYQAQGPDVWRVQIDRK"
BASE COUNT          439 a          674 c          717 g          450 t
ORIGIN      
        1 ctgcatgccg gattcctcgg caactggcgc gtcacggtac ttgcgacgca cctgcacatc
       61 gcgctgctcg gctgggttct ggtaatgatc gtcggcatct cacatcgcct cctgccgatg
      121 tttcttcttg cgcacggcgc tgacacgcgg tggacgtctc gcgcgctcgc gttgctcgcg
      181 tccggcgtgg tggttctggc gcttggcatc atgactggcc acagcgtcaa gcccaacatc
      241 gtcgcgtgga tgggactgct gttggtggaa tccggcatct tctgcttcct cagacaggcg
      301 tggctctttt tcaaggtacg caagcgcccg cgactcgacg caggactgcg gcatgccgcg
      361 actgccctgg tctttctcgc ggggagcgcc gctctggcgc cggtcgttct tgctgcgagg
      421 tcggagtatc gccggctgga tacggcctac gtgatgctcg ggctgcttgg cgggctgacg
      481 ctctacgcga ttggacagtt ctacaagatc gtgccgttcc tcacgtggat ggcgcgcttt
      541 cgcgaggaca tggggaagaa acgagttccc acagtggcac aactgtattc cccgctcgtt
      601 gcgcacatcg atctcgcgct gttcgccatc gccattcccg gaatggcgat aggtgttata
      661 acaggtattg ttccgatggt ccgcctcgcg gcaattctgt tcgtggctgg tgccgggctg
      721 ttcgtgagcc agatcgctcg cgtgacgttc ggcacgtcgt tcggcacttc gttcgggaac
      781 gtcgaggcgg gaactggtca acctacaact gcgaaggcat cctgatgaat acgagcgcaa
      841 cgccggtgca ggcatccgac aagctgcaga gcctgttcga gcgtgacgag cggctgatcg
      901 acgtggtagc gagccactcg ccgcagctgg ccaagcttcg ccattcaccg atgcgccgga
      961 taatggcacg cgtgacgacg gtggcacagg cggcgcggct gtgcaagatg tctgtcgatt
     1021 cactcgtgca cgatctcaac cacgcgatcg gcatcgacac cgcgcccggt gacacgacaa
     1081 gcggcaatgc gactgatgcg agtgatgaga ccgcagcagc gcagtggtcg ataccatcgt
     1141 cggtgtcggt cgtggagctg gatgtgcggg aggagttgag caagggtggc gagccgttct
     1201 ccaggatcat gggagcagtc ggcggactcg gcgagcgcga ggtgctgcat ctgcgcgcgc
     1261 cgttcgagcc ggttccactc tttgcggtga tgcagaagcg tggattcgcg cacagaaccg
     1321 aacaacacgc tgacgacgac tggtcggtgt ggttctttcg ccaggagatg gcggctgaat
     1381 ttccgaccac agcgacgaca gctgcgcaac ccgctgacgt aacgactccg aatccaccca
     1441 caccgggcgc tgagaacgcg ccggcgcgca cggaagtgtg gctggatgtg agagacatgg
     1501 agccaccgga accgctggtg cgcacgctgg aagcgttgga gagtcttcca gcggacagca
     1561 tgctggtgca gcgcaacatg cgcgtcccgc agttcctcct accaatcctc agagagcgag
     1621 gttttcactt cacgatagac gagccgcaat caaacgaagt gcacgtcaga atctggcgcg
     1681 cggagtaatc gtaagtatca ggtgtcctgt gcgtcacctt gaaccatgag tgctttcaat
     1741 aacaggagta ataaatgtcg cagtcaaccg caccgcagtc cggtaatggc ccagtcgagc
     1801 tcgacgttcg tgtcattccg ccgcgggaca agcatcccac catcttccgt acgttcgacg
     1861 gcctcaagaa aggccagtcg atgattctca tcaacgatca cgatccgcgc ccgctgcggt
     1921 accagctcga tgcagagcat cccgggacgt tcgagtggac gtatcaggcg cagggaccgg
     1981 acgtctggcg cgtgcagatc gaccggaagt aacgagcgga acgacgtgtc gcatgccgat
     2041 tgattccaca cggggcctgg ctacaccgtt agtcgcgggg gatcatcgta cggtattcga
     2101 aactgtgctg ctgcacgacg atgcagcagc acagcaggca caggtcatcg tagcccgcct
     2161 gcgtagtccg ctatgatcac caactggtgt ggtaagccaa atgttctgtt gctaaaatgc
     2221 ctcgtgacca ccgcatgaat caaacgggcg ctcgacaaac gtgacgtgcc acgcgagagc
//
LOCUS       DATIMD010000277         3634 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_395134, whole genome shotgun sequence.
ACCESSION   DATIMD010000277 DATIMD010000000
VERSION     DATIMD010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3634
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395134"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1312)
                     /locus_tag="VLI40_06380"
     CDS             complement(<1..1312)
                     /locus_tag="VLI40_06380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96838.1"
                     /translation="MLEGREHVAAPNGGGAITEERSGEGFRLVTLGGLVLLNRDGKPQ
                     TSLGPRNLTLLVYLALATKPLTRDHVAELFWGDRDEDRARHSMREALSKLRQLLGADS
                     IARRSDRVMLDPSVPLSVDARQLAAAAGAGDARSVVSLYGGPFLDGIHTDGARSLEDW
                     CDAERAMYEARFTAACATECERLRGESPRECAELARRWLQAAPLDPKAAIELLRALAS
                     PDTPDALRLAMREYRSITERLANDFELAPHPSVAKVADAIAHRASAIAATTSADEAVK
                     AVAEDERRDVETITPAPLHNEASARDALPEQPRVARIRPWKRKPVALIAMLVTASVAI
                     VTAGLLLMNTRPLAADSDDGTLAIVPFEVLSGTGDRWLAAGAPRLIGAALSRDHVVSV
                     VSASRLHDALSSRDTTAAPSPAAALAAARSLGARWIVTGSVIAGD"
     gene            complement(1447..2451)
                     /locus_tag="VLI40_06385"
     CDS             complement(1447..2451)
                     /locus_tag="VLI40_06385"
                     /inference="COORDINATES: protein motif:HMM:NF025729.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4412 domain-containing protein"
                     /protein_id="HSU96839.1"
                     /translation="MRQITTDARFIARTMLLSAALLGASTSRVNAQGLTYDMRMAMKK
                     GLDTTASTAQILMSGHGQFSDGNSRMDMDESAMPSGFMGKGTSMIAKNATRNIWIIEP
                     AKQQYIEINMDSLANLSFGSLNIAGGLVKMETSDVTVDMQPMGPGETIQGYTTMKYRM
                     TTNFKSMISIFGRKKRSTNTTTTDIWVAPQLAGLYNPASAAGQAGGGSELTRKTIAAY
                     AKVGKGAYIRTVSQTQSTGDHASAMTMTMELLNIKRTRVPASAFEVPKGYAKVDGTDA
                     LTALGGTGSDSASGAKGDFAGQLADSAKQGAKQGAANEVKDQAKSKTKSILRGVFGRP
                     "
     gene            complement(2506..>3634)
                     /locus_tag="VLI40_06390"
     CDS             complement(2506..>3634)
                     /locus_tag="VLI40_06390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96840.1"
                     /translation="SIAPPAARSVWEKLADGVATPLYAQSPTETRRQEAEADGIKDAY
                     GNLAKAPFKAMLSDWETQFSAEPADGRLNLTLQLKKSMAGVAAVINGEGYLSDFDFSS
                     DIDVERSTVEKMEATYRKLNGTMNFKWAIQTTADGRLLGNAKMKLPAVIEIPLYQYLG
                     GLPLYLEISSAVLIKPALNGEYEFSRGAFRVTYDGYQTFRVHEGNADADGNVTGDIDF
                     GDVENGPGAPLGLVIAFAAPRIELSLGVSKVVPFDEAKDAAEKADKYFDKLVNKAFGP
                     DALAQFKNSPLSQVTATKIVETAMGSDAAAFLELTTSSGTSHSGSAAMVPCTRTDIHM
                     WVNVGASAHAMGQSVGDASKEIFRKDFTRVVPSEDALCRNI"
BASE COUNT          616 a         1147 c         1091 g          780 t
ORIGIN      
        1 catcgccggc gatgacgctt ccggtaacga tccaccgtgc gccgagactt cgcgccgcgg
       61 cgagggcagc ggcgggcgac ggggcggcgg tcgtatcgcg cgatgaaagc gcgtcgtgaa
      121 gccgtgacgc gctgacgaca ctcaccacat ggtcccgcga cagtgcggcg ccaatcaatc
      181 gcggggctcc tgccgcgagc caccggtcac cggtaccgct cagcacttcg aacggcacga
      241 tggcaagtgt gccatcgtcg gagtcggcgg cgagcggacg cgtgttcatc aacaggaggc
      301 cagccgtcac gatggcgacg gacgcagtta cgagcatcgc gatcagcgcg accggcttcc
      361 tcttccatgg ccggatgcgc gcgacgcgtg gctgctcggg caacgcgtcg cgcgcgcttg
      421 cctcattgtg taatggagcg ggtgtgattg tctcgacgtc gcgtctttca tcttccgcaa
      481 ctgccttaac tgcctcatct gcagaagtcg ttgcagcaat cgccgatgcg cgatgagcga
      541 tcgcgtcggc aacttttgcg acgctcggat gcggtgcgag ctcaaagtcg ttcgcaagcc
      601 gctccgtgat ggaacgatat tcacgcattg ccagccgcag ggcatccggt gtgtccggtg
      661 atgcgagtgc gcgtagcaat tcgatcgcgg ccttcggatc gagtggtgcc gcctgaagcc
      721 agcgccgggc gagctcggcg cattctctcg gtgattcacc gcgaagtcgc tcgcattccg
      781 tcgcgcacgc ggccgtgaat ctcgcctcgt acatcgcgcg ctcggcgtca caccagtctt
      841 ccagtgaccg cgctccgtcg gtgtgaatgc cgtccagaaa cggaccgcca tacaacgaga
      901 cgacggagcg cgcatcacca gcgcccgctg ccgccgccag ctgtcgcgca tccaccgaca
      961 atggcacact cgggtcgagc atcacacggt ccgagcgtct cgcgatcgaa tcggcgccga
     1021 gtagctgacg aagcttcgac agggcttcac gcatcgaatg acgcgcgcgg tcctcgtcgc
     1081 gatcacccca gaagagctcg gcgacgtgat cgcgcgtcag cggtttcgtt gcaagggcga
     1141 gatagacaag caacgtgagg ttgcgcggcc cgagcgaggt ttgcggcttt ccatcccggt
     1201 tcagcaggac gagtccgccg agagtgacca gacggaagcc ttcaccgctt cgctcttcgg
     1261 tgatcgcgcc gccaccgttt ggtgccgcca cgtgctcgcg cccctctagc attcgtgctc
     1321 cctgaggatc aggtccccgg tctccaacga gacggacacg cgatagccgt tcgccaaagt
     1381 agcgcgcctc cggtcctgcc gccagtgatg aatgctgcgg gaatcacgat ggtatgattg
     1441 cgagcattac ggacgcccga agactccgcg gaggatgctt tttgtcttgc tctttgcctg
     1501 atccttcacc tcgttcgccg cgccctgctt tgccccctgt tttgcgctat cggccaactg
     1561 acctgcgaaa tcacccttcg ctccggaggc actgtccgac ccggtgcccc cgagcgcggt
     1621 aagcgcatca gtgccgtcga cctttgcgta cccttttgga acttcgaacg cggatgcggg
     1681 cacgcgtgtg cgcttgatgt tgagcaactc catcgtcatg gtcatcgccg aagcatgatc
     1741 gcccgtggat tgtgtttgcg acaccgtcct gatgtacgcg cccttaccca ccttcgcata
     1801 cgcggcgatg gttttccgag taagctcgga tccaccgccg gcctggcctg ctgcggaagc
     1861 gggattgtac aaacccgcca gttgcggtgc cacccagatg tctgtcgttg tggtgttcgt
     1921 cgatcgcttc ttgcgtccaa atatggaaat cattgacttg aaattcgtgg tcattcggta
     1981 cttcatggtc gtgtagccct ggatcgtctc gcccggtccc attggttgca tgtcgacggt
     2041 gacgtccgac gtctccatct tcacgagacc gcccgcgatg ttcagcgagc cgaatgacag
     2101 attggcaagc gagtccatat tgatctcgat gtactgctgc ttggcgggct cgatgatcca
     2161 tatattccgg gttgcgttct tcgcgatcat ggacgttccc tttcccatga atccactcgg
     2221 catggccgac tcgtccatgt ccatgcggga attaccatcg gagaactggc catgtcccga
     2281 catgaggatc tgcgcggtgc tcgccgtggt gtcgagtccc ttcttcatcg ccatcctcat
     2341 gtcgtacgtc aatccctggg cgttcacgcg cgaggtagag gctccgagta gcgctgcact
     2401 cagcagcatc gtcctggcga tgaagcgcgc gtcggttgtg atctgtcgca ttgtcatttc
     2461 tccgtagtga tactgaagcg gtgattgtga tcgagcggaa ttacatcaga tattccggca
     2521 gagcgcgtcc tcggacggca cgacgcgcgt gaagtccttg cgaaagattt ccttgctcgc
     2581 gtcaccgacg ctctgtccca ttgcatgcgc agacgcgccc acgttcaccc acatgtggat
     2641 gtcggtgcgc gtgcacggta ccatcgccgc actgccggag tgactggtac cgctgctcgt
     2701 cgtgagctcg aggaacgctg ctgcgtcgct acccattgcg gtctcgacga tcttcgtcgc
     2761 cgtgacctgg ctcaacggtg agttcttgaa ttgcgcaagc gcgtcggggc cgaatgcctt
     2821 gttgaccagc ttgtcgaagt acttgtccgc tttttccgcg gcgtccttcg cctcatcgaa
     2881 tggaacgacc ttgctgacgc caagactcag ctcgatgcgg ggagcggcga atgcgatcac
     2941 cagcccgagc ggcgctccgg gcccgttctc cacgtctcca aagtcgatgt cgcccgtgac
     3001 gtttccatcc gcatcggcgt ttccctcatg cacgcggaat gtctggtacc catcgtaggt
     3061 gacacggaat gcaccgcggc tgaattcgta ctcgccgttg agcgccggct tgatcagtac
     3121 ggcggagctg atctcgagat acaggggcaa tccgccgagg tactggtata acggaatctc
     3181 gatcaccgct ggcaatttca tcttggcgtt gccgagcaat ctgccgtcag cggtggtctg
     3241 gatggcccat ttgaagttca tcgtgccgtt caattttctg tacgtggctt ccatcttctc
     3301 gacggtactc cgctccacgt cgatgtcgga tgagaagtcg aagtccgaga gatagccctc
     3361 gccgttgatg actgcggcga caccggccat cgacttcttc agctgcagcg tgagattcag
     3421 acgtccatcg gcgggctcgg cggagaactg ggtttcccag tcactcagca tcgccttgaa
     3481 tggagccttg gccagattgc cgtatgcgtc cttgatgccg tcggcctccg cctcctgtcg
     3541 tctggtctcc gtcggtgact gcgcgtacag cggcgtcgcc acgccgtcgg caagcttctc
     3601 ccagacggag cgcgctgctg gcggagcgat ggac
//
LOCUS       DATIMD010000278         6567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_107257, whole genome shotgun sequence.
ACCESSION   DATIMD010000278 DATIMD010000000
VERSION     DATIMD010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6567
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107257"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1641)
                     /locus_tag="VLI40_06395"
     CDS             complement(<1..1641)
                     /locus_tag="VLI40_06395"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU96841.1"
                     /translation="MHASVLILGLGISIEAVLVVMLARHVRRLKLAGAAAAATTRADA
                     GQAQSIRGALTERETLMREMQQILSGLDHKVRERTLELAEAMEKAEQGNQAKSEFLAR
                     MSHEIRTPMNGILGMTGLLLDTGLNQEQREYVDTVRSSGQALLTIINEILDFSKIEAG
                     RLQIEIIDCNVRTTVEEVVELLADQAMQKQLELGFYVDERVPAVVRTDQGRLRQILLN
                     LVGNAIKFTHAGRIYVHVTVESETDAGVQLRFDVNDTGIGLTAEARTRLFQPFQQADS
                     STTRKYGGTGLGLAISKHLVGLLGGAMEVASVPGEGSVFHFTLAAQRGPRVMSTQNAT
                     VMKDSRMLVLVGGKLTRVVLRRYATDWGASVDGARTLAAARALLGASAEAGQRYDMMI
                     VDLAMLGADPLRTIRDLRRAFPDCIRGVVALVQPRQKPSADMAAKAGIDATFALPVRP
                     TRLLGVLGSVLHPDLAPKVRRVAATAATGAVSKARARVLVAEDNPVNQRVASHMLNKL
                     GYRCDIASNGQEAVAMLAQLPYDLVLMDCQMPEMDGYSA"
     gene            complement(1664..2341)
                     /locus_tag="VLI40_06400"
     CDS             complement(1664..2341)
                     /locus_tag="VLI40_06400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96842.1"
                     /translation="MSNSRIAEVLYDSETMLRLVDSELEELRDDGLDTGLRGNNVGVL
                     LAMMQRATGEIAQVLCTLHTSREALQGVTLQEIHDSTTKLDEVCSATELAATRMMDGL
                     ERAHAYVDRLDEIDASGNVGDSVIEAATVRAKMRDELFSVMGSLQFQDITSQQLGHVA
                     QMLHDIERRLHATSALLSGGRAEATVIANEQLPTFSESASTRNSFERQATADALFWCD
                     HSGRVTQ"
     gene            complement(2348..2716)
                     /locus_tag="VLI40_06405"
     CDS             complement(2348..2716)
                     /locus_tag="VLI40_06405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU96843.1"
                     /translation="MRFLVVDDSATMRRIVVNSLQRVGFSDVVEASDGAEALEKIATV
                     DFVITDWNMPKVSGAELTRAIRSCDETKLMPLIMVTARSVRDDILTAMEAGVDSYVVK
                     PFTPQVLREKIDAVLATRAA"
     gene            complement(2749..3048)
                     /locus_tag="VLI40_06410"
     CDS             complement(2749..3048)
                     /locus_tag="VLI40_06410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96844.1"
                     /translation="MHVNKIAADMVRTDALPRVQSAAVPEGPIDPVAPARGADAVQIS
                     DAGFALASDGASAPTASSLDPARADQIRSKVLSGAYNSLEMADQVARAVIRSGDL"
     gene            complement(3123..3413)
                     /locus_tag="VLI40_06415"
     CDS             complement(3123..3413)
                     /locus_tag="VLI40_06415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96845.1"
                     /translation="MPTADSLLEENLDRVIDSVVRNVNAGRGAVPDPDSVQAASAADG
                     ARSEEDEARETLADLYGHVAHALRALDTPQRATATYRAPQAPAVVPTLNLIR"
     gene            complement(3415..3846)
                     /gene="fliS"
                     /locus_tag="VLI40_06420"
     CDS             complement(3415..3846)
                     /gene="fliS"
                     /locus_tag="VLI40_06420"
                     /inference="COORDINATES: protein motif:HMM:TIGR00208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HSU96846.1"
                     /translation="MGYSAYTSKYLENDVVSRSKEWLVPLLYEHLLAQLRRAQVQIQQ
                     RDFEGKAASLEKASAIVIELMGSLDREKGGELAQRLAALYAYFGTEILAVGRTLDTGR
                     LTKIMEMASSLHESWVIAARTQWPAGSTAQPGDSLYDPRGR"
     gene            complement(4023..4490)
                     /locus_tag="VLI40_06425"
     CDS             complement(4023..4490)
                     /locus_tag="VLI40_06425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96847.1"
                     /translation="MTRALVTDVPVAAHAKAIQAFDEFDALVSRYEMLLDTQQVLVRT
                     ANFAGLFEMASRGDKLARDATLCGKRFAPLVGAVASGQFAGPRASDIQRRSFASRSYA
                     ETLDGSATRLASVCSAHRDVMGRELRSAVAASPQAGLPPAYRTGSQHFVDRRG"
     gene            complement(4487..>6567)
                     /gene="fliD"
                     /locus_tag="VLI40_06430"
     CDS             complement(4487..>6567)
                     /gene="fliD"
                     /locus_tag="VLI40_06430"
                     /inference="COORDINATES: protein motif:HMM:NF018852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HSU96848.1"
                     /translation="TPATASTLLANLWNGGSASGAQVGDTLTISGTRGDGSAVNVSFT
                     VAAGSTVQDLLNTLNDATTGFGAGTRPATASIDASGHIVVSDGTSGQSSLSQQMVANN
                     QGGGRLDFGAFATTSTGRSRELVAGTDAKFSVDGVAFTRSSNTVSDVIANTTLTLTAA
                     DPNVIANVNVSLSGSAATSAVQNYVNAYNAVVDFIKTQQTPGADPTSNPTLYNDPLLR
                     TARSALSTSMLTPVAGAASDMSTPDTVGISLTKDGHLSFDSTKFQTAFTSRYADVTKL
                     FEESGVSTNPSLVYTASTTATQPGSYAVNITQAAAQAQMLGTGFSGVYSQSGAPDTMT
                     VTDLASSSVAQIQLAGGMTTDQIVAALNASFGTPENRALLGSTTLNDATGTAAATSST
                     LLTDLHLSSGASAGVAVGDTIGYSGTRTDGSAYTGTFTTSATSTVADFVTQLQSSVGT
                     GATVSFVNGQISVKSVNSGTSPLTMSLTANNEGGGLLDLGTMNVTATGHGVLSMTATN
                     VGGQVQIQHNAYGASAGFSIAYSGTGTPATQLGIAAGSAYGADVQGTIGGYTATGSGR
                     QLVGATGTPVDGLSMAYLGTTPGAIGSLTLTQGFGSVIDRLLTSWTQTGGTIAAQNQQ
                     LSDTISMQQARLTDFNARIALQRAALLKEYSTMDSTVQQIMAQGNSFLAAFNNQSTNT
                     NKTTTNGLGQ"
BASE COUNT         1170 a         2039 c         2059 g         1299 t
ORIGIN      
        1 cgcgctgtac ccgtccattt caggcatctg acagtccatc agcaccagat cgtacggaag
       61 ttgcgcgagc atcgcgacgg cttcctggcc attcgacgcg atgtcgcagc ggtacccgag
      121 cttgttcagc atgtgcgacg cgacgcgctg gttcaccgga ttgtcctcag cgaccagtac
      181 gcgtgcacgc gccttgctca ccgcccctgt cgcggcagtc gctgcaacgc gtcgcacctt
      241 gggtgcaaga tcgggatgga gcacagatcc gagaacaccg agcaatcgcg tggggcgaac
      301 tggcaacgcg aaagtggcat cgattcccgc cttggccgcc atgtcagcgc tcggcttttg
      361 ccgcggttgc accagcgcga cgacgcctcg gatacagtcc gggaacgcac ggcgcagatc
      421 ccgaatcgtc cgcagaggat cagcgccgag catcgcgaga tcgacgatca tcatgtcgta
      481 tcgctggcca gcctcggcgc tcgcgccaag taacgcacgc gcagcggcga gggtgcgcgc
      541 accgtccacg cttgcgcccc aatccgtagc gtaacgcctg agtaccacac gcgtgagctt
      601 gccgcccacg agcaccagca tacgcgagtc tttcatcacg gttgcattct gcgtcgacat
      661 cacgcgtggc cccctctgcg cggcgagcgt gaagtggaat acacttccct cgcccggcac
      721 actggccacc tccatggcgc cgccgagcag gccaacgaga tgcttcgaga tggcgagccc
      781 aaggccggtg ccgccgtatt ttcgcgtcgt cgagctgtcc gcctgctgaa acggctgaaa
      841 cagtctcgtt cgcgcttctg cggtgagccc gatgcctgta tcgttcacgt cgaatcgcag
      901 ctgcacgccc gcatcggtct cggactcgac ggtcacgtga acgtagatgc ggcccgcatg
      961 tgtgaacttg atcgcgttgc caaccaggtt gagcagaatc tggcgcagtc gcccctggtc
     1021 ggtgcgaact acggcgggga cgcgctcatc cacatagaag ccgagctcga gctgcttctg
     1081 cattgcctga tcggcaagca gctcgacgac ttcttccacc gtcgtgcgaa cattgcaatc
     1141 gatgatctcg atctggagcc gtccggcctc gatcttcgag aaatcgagga tctcgttgat
     1201 gatcgtaagc agtgcctgcc cggaagagcg aacggtgtcg acgtactcgc gctgttcctg
     1261 gttgaggccg gtatcgagaa gcagtcccgt catgccgagt atgccgttca tgggagtgcg
     1321 aatctcgtgc gacatgcgtg cgaggaactc actcttggcc tgattcccct gctccgcctt
     1381 ctccatcgcc tcggccagct cgagtgtgcg ctcgcgaact ttgtgatcga gaccggagag
     1441 aatctgctgc atctcacgca tgagcgtctc gcgctccgtg agcgcgccgc ggatgctttg
     1501 cgcctgtcct gcgtctgcgc gagtcgtagc tgctgccgca gcgccggcga gcttgaggcg
     1561 ccttacatgg cgcgcgagca tgacgacgag aactgcctcg atcgagatgc cgagcccaag
     1621 aataagaacg gacgcgtgca ctttgtagct ggctccgcgc gaactactgg gtgactctgc
     1681 cggagtggtc gcaccagaac agcgcgtcgg ccgtcgcctg gcgctcgaac gagtttcgcg
     1741 tggaagcgga ttcgctgaat gtcggcagtt gttcgttcgc aatcacggtc gcttcggctc
     1801 ggccgcccga cagcagtgcc gaggtggcat gcagccggcg ttcgatgtca tggagcatct
     1861 gggctacatg tcccagctgc tgcgacgtga tgtcctggaa ttgcagcgag cccatcacgg
     1921 agaacagctc gtcacgcatc ttcgctcgca cagtcgcagc ttcgatgacc gaatcgccga
     1981 cgtttccaga cgcgtcgatc tcatcgaggc gatccacgta tgcgtgggct cgctccaggc
     2041 catccatcat gcgcgtagcg gcgagctcgg tggcagagca cacctcgtcg agcttggtcg
     2101 tgctgtcgtg aatctcctga agcgtcacac cctgaagagc ttcgcggctc gtgtgcagcg
     2161 tgcagagaac ctgtgcgatc tcgccggtgg cgcgttgcat catggcgagc agcacgccaa
     2221 cgttgttgcc gcgaaggccg gtatccagcc cgtcgtcgcg cagctcttcg agctcgctgt
     2281 cgaccaggcg aagcatcgtc tcggaatcgt acaggacttc ggcgatgcgt gagttggaca
     2341 tggggattta cgctgcccgg gtagcgagca ccgcgtcgat cttctcgcgc agtacctgag
     2401 gggtgaatgg cttgacgacg taactgtcga cgcccgcttc catggcggtg aggatgtcat
     2461 cgcgaacact gcgcgcggtg accatgatca gcggcatcag tttcgtctcg tcgcaagagc
     2521 gaatcgctct cgtgagttcc gcgccactga ccttcggcat gttccagtca gtgatgacga
     2581 agtcgacggt ggcgatcttt tccaatgcct ccgcgccgtc acttgcctcc acgacgtcgc
     2641 tgaacccgac gcgctggaga gagttcacca ctatacggcg catggtggcc gaatcatcaa
     2701 caacgaggaa gcgcatgtgc ttggctccag aaaagctgcg aaacgctact acaggtcgcc
     2761 gctgcgaatc acagcgcgcg cgacctgatc ggccatttcg agagagttgt aggcgcccga
     2821 gagaaccttc gagcggatct gatcggcacg tgccggatcg agagacgatg cggtgggcgc
     2881 gctcgcacca tcacttgcaa gggcgaaccc ggcatccgat atctgaaccg catccgcacc
     2941 gcgtgccggt gcaactggat cgatcggccc ttcgggcacc gccgcgctct ggacgcgcgg
     3001 tagtgcgtcg gtacggacca tatcggctgc gattttattt acatgcatgt ggtttctcct
     3061 tcccttcgaa tatcgggtta cgggggccgt tactttaccg ccgcccggtc gtatgtctgt
     3121 ggctagcgaa tcaggttgag cgtggggacg accgctggcg cttgaggcgc tctgtacgtc
     3181 gccgtggcgc gctgcggtgt atcgagtgct ctgagcgcat gggcgacgtg gccatacagg
     3241 tcggccagtg tctcccgcgc ctcgtcctcc tcggatcgcg caccatccgc tgcactcgct
     3301 gcctgcaccg aatcggggtc cggcaccgct ccccgtcccg cattgacgtt ccggactacg
     3361 gaatcgatca cgcgatccag gttttcttcg aggagcgagt cggccgtcgg cacgttaccg
     3421 gcctctcgga tcgtacagcg aatcaccggg ctgagccgtg cttccggccg gccattgcgt
     3481 ccgtgcggca atcacccagg attcgtggag gctcgacgcc atctccatga tcttggtgag
     3541 tcgtcccgtg tccagggtcc ggcctacagc cagaatctcg gtaccgaaat aggcgtatag
     3601 cgctgccagc cgttgtgcga gctcgcctcc cttctcgcgg tcgagagatc ccatcaactc
     3661 gatgactatt gcggacgcct tttcgaggct cgctgccttg ccctcgaaat cgcgttgctg
     3721 gatctgaacc tgcgcgcggc gaagctgcgc cagcaggtgc tcgtacagca agggaaccag
     3781 ccattccttc gaccggctta caacatcgtt ctcaaggtac ttggaggtat aagcgctata
     3841 tcccatgctg ggcagtgtcg ggcgagcggg agcaaaactt gaacaccggc ggggatcatc
     3901 ctggaccgca ccgcaggtcg aggccaggag cacctgcgga gccaccgtca acgcgattgc
     3961 tggcgcaggg cgccagcgcg gcagacgatg ggttgtgagg cgttacaagg agcgtcgcgg
     4021 aatcaaccgc gccggtcgac gaagtgctgc gatccagtac gataggccgg tggaaggcca
     4081 gcctgagggc tagcagcgac cgcgctgcga agctctcggc ccatcacatc acgatgtgcg
     4141 ctgcacacgc tggcgaggcg cgtggccgag ccatccagcg tttcggcata cgaccgcgaa
     4201 gcgaagctgc gccgctgaat atcgctcgcg cgtggaccag cgaattgccc ggatgcgaca
     4261 gcacccacga gcggcgcgaa gcgcttcccg catagcgtgg catcgcgcgc caacttgtca
     4321 ccgcgtgacg ccatctcgaa aaggccggcg aaatttgcag tgcggacgag cacctgctgt
     4381 gtatcgagca acatctcgta ccgggacacc agcgcatcga attcatcgaa cgcctgaatc
     4441 gccttggcat gtgcagcgac cggcacgtca gtgacgagtg cgcgtgtcac tggccgagcc
     4501 cattcgtcgt ggttttattg gtgttggtcg actgattgtt gaacgccgcg aggaatgagt
     4561 ttccctgcgc catgatctgc tgcacggtgc tgtccatcgt cgagtattcc ttgagcagtg
     4621 cggctcgctg aagagcgatt ctcgcattga aatcagtgag tcgcgcctgc tgcatgctta
     4681 tcgtatcgct gagctgctga ttctgcgcgg cgatcgttcc gccggtctgc gtccagcttg
     4741 tgagaagccg gtcgataacg gagccgaatc cctgcgtgag tgtcagactg ccgatcgcgc
     4801 cgggtgtcgt gccaagatag gccatgctga ggccgtcgac tggagtgccg gtggcgccga
     4861 caagctggcg tccggatccg gtagccgtgt atccgccgat ggtaccctgt acatcggcgc
     4921 catacgcgct tcccgcggcg atcccgagct gcgttgccgg agttcccgtg ccggagtatg
     4981 cgatcgagaa tccggccgag gcaccatatg cattgtgctg aatctggacc tgcccaccaa
     5041 cgttggtcgc ggtcatcgac agaacgccgt gtcccgttgc ggtgacattc atcgtgccca
     5101 ggtcgagcag tccgccacct tcgttgttcg ccgtgagcga catcgtgagt ggcgaggtac
     5161 cgctgttgac ggacttgacc gagatctggc cgttgacgaa cgacaccgtt gcaccggtgc
     5221 caaccgacga ttgaagctgc gtgacgaagt ctgcgacagt agacgtagcg ctcgtggtga
     5281 acgtgccagt gtatgcagag ccgtcggtac gcgttccgct atagccgata gtatcgccta
     5341 cggcaacccc tgcggacgcc ccgctcgaca gatgcagatc ggtcagcagt gtcgatgacg
     5401 tcgcggccgc ggtcccggtc gcatcattca atgtcgtcga accgagcagc gcacgattct
     5461 caggtgtgcc gaacgacgcg ttcaacgccg ccacgatctg atcggtggtc attcctccgg
     5521 ccagttgaat ctgcgcgacg gagctcgatg caagatccgt cactgtcatc gtatcgggcg
     5581 cgccggactg gctgtacacg ccactgaagc cggtgccaag catctgcgcc tgcgcggctg
     5641 cctgcgtgat gttgaccgcg tagctgcccg gctgcgttgc ggtcgtcgac gccgtataca
     5701 cgagcgacgg attggtcgag actccggact cctcgaacag cttggtcaca tccgcatagc
     5761 ggctggtgaa ggcggtctgg aatttcgtgg agtcaaacga cagatggccg tccttcgtca
     5821 gcgatattcc aacggtatcc ggtgtcgaca tgtccgatgc cgcaccagca accggcgtga
     5881 gcatcgatgt tgacagcgcg ctccgtgcgg tgcgcaacaa cgggtcgttg tacagagtcg
     5941 ggttgctggt aggatcggcg cccggcgtct gttgcgtctt gatgaaatcg actaccgcgt
     6001 tatacgcgtt gacgtagttc tgaacagccg acgtcgcggc gctgccgctg agcgatacgt
     6061 tcacgttcgc gatcacattc ggatctgcgg ctgtgagcgt gagcgtcgta tttgcgatta
     6121 cgtcggaaac cgtattgctc gagcgcgtaa atgcgacgcc gtcgaccgag aactttgcgt
     6181 cggttccggc cacgagctcg cgggagcggc cggttgacgt ggtcgcgaag gcgccgaaat
     6241 cgagcctgcc gccgccctga ttgttggcca ccatctgctg cgagagactg ctctggccgg
     6301 acgtaccgtc gctgacgacg atatggccgc tggcgtctat cgacgccgtc gccggtcgcg
     6361 tgcctgcacc aaagccggta gtcgcatcgt tgagcgtgtt gagcagatcc tgtactgtac
     6421 tgcctgcagc cacggtgaac gagacgttca cagccgagcc gtcgccgcgt gtgccggata
     6481 tggtcagtgt atcgccgacc tgcgcgcccg atgcggagcc gccgttccag aggttggcaa
     6541 gaagcgtcga tgcagtcgct ggagtgg
//
LOCUS       DATIMD010000279         9830 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1841731, whole genome shotgun sequence.
ACCESSION   DATIMD010000279 DATIMD010000000
VERSION     DATIMD010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9830
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1841731"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1177
                     /locus_tag="VLI40_06435"
     CDS             <1..1177
                     /locus_tag="VLI40_06435"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HSU96849.1"
                     /translation="YQLFGRPYQLSLQGTRNEIGGSWDALVTHPFITDLQRTSWRASA
                     GSSTGYRYFLRGDAPNAALAFTRAYSDVGGVIAFGPIHHVYLVGATLSKERERTGRMP
                     VLVLDSAVVPDTSTALIGRYSEHRTSRINLLLGFRNTSFMQVRAFDAVEGTQDVRTGV
                     QLATLLGRGIKLTPKDERDYFASTDVYYGHGTPQSFAGIEFMGERRRDLDTHKYDGVL
                     ASGRAAWYAHPTAKHTSIIDVEYSGGWNQRVPFQVSLADRDGGIPGYGSSHLGGAARM
                     VVRLEDRYRLGHIRQFAGLASAFWVDAGRLWAGEAPFGVNTNIKYAVGVGLLAALPPR
                     SRRTWRVDFAVPLNDRGDSKFEIRFTNHDFTRWFWREPGDVQTSRERAIPNSIYNWP"
     gene            complement(1238..2818)
                     /locus_tag="VLI40_06440"
     CDS             complement(1238..2818)
                     /locus_tag="VLI40_06440"
                     /inference="COORDINATES: protein motif:HMM:TIGR00924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HSU96850.1"
                     /translation="MATQKPVFDQPQAATVTHDEPPTGFEQWTGNKSFFGHPSGLSTL
                     FFMEMWERFSYYGIRPLLVLFMSAALLSGGFGFDRTVASSIVGIYAACVYLASLPGGW
                     IADRWLGLQRSVLWGGVLIACGHISIALSTVFAHSAFFVGLVFIVLGTGMLKPNVSAT
                     VGDLYPEGGARRDAGFSIFYMGINTGALIAPLITGYLGERVGWHWGFGAAGVGMIIGV
                     IMFKLRMTPTLGPIGAASTATAAEQSKVKRITFASVAVIGVIVLLTILGVIHINPVAL
                     AERMGYVLLALAVVYFAYMFFFAGLTGDEKKRVAVIVVLFVFATIFWAGFEQAPTSLN
                     LFAHDFTNRSVFGWEVPTLWLQSAESFFVITLAPVFAWIWVALARRRLDLSSPTKFAI
                     GLAFAGVSFVVMLVASNRIVAGAAVNNAVHVSMWWLVICYMFQAFGELSLSPVGLSSM
                     TKLAPRRFVGQMMGIWFLADALGNLVAGLVGGHVNPNNLNEMPLLFRNTAIALFIAAA
                     VCAALVIPIRRMMEAKAE"
     gene            complement(2851..3864)
                     /locus_tag="VLI40_06445"
     CDS             complement(2851..3864)
                     /locus_tag="VLI40_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HSU96851.1"
                     /translation="MTHAPAEPALLQVTGLRKDFPVRQGWQQSLLGRNAAAIRAVNDV
                     SFDIARGETLGVVGESGCGKTTMGRSILRLIEPTAGAVVFDGINVATLRGAALRSMRR
                     KMQVVFQDPFSSLNPRMTVGAAVREGMLIHHLAEGRAADHRVKTLFEEVGLNPDYASR
                     YPHEFSGGQRQRIGVARALSVEPDMIVCDEPVSALDVSVQAQVINLLQDLQRDRGLTY
                     LFIAHDLSVVRHIADRVAVMYLGRIVEIASADDLYSNPIMPYTQALLSAVPRPEPGRQ
                     TARIVLQGEPPSPANPPPGCVFYSRCQHPLKDHDCTTIVPPLEEKTPAHFAACIKQPS
                     QLL"
     gene            complement(3861..4880)
                     /locus_tag="VLI40_06450"
     CDS             complement(3861..4880)
                     /locus_tag="VLI40_06450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU96852.1"
                     /translation="MLLSVTDLRTYFHDGGAVARAVDGVSFGVAAGETVAVVGESGSG
                     KSVTALSILRLIRPPGRIETGSSINFQGRELLQLSDDEMRRIRGNRIAMIFQEPMSAL
                     NPVLTVGEQIAEVVRVHTDASHHDAWERAVEMLALTGIPAPRERASEYPHQLSGGMRQ
                     RVMIAMALVLRPALLIADEPTTALDVTIQAQILELLQRLKEQLGMAVLLITHDLGVVA
                     EVADRVVVMYGGEVVERATVTELFDAPHHPYTEGLMSAMPRLDRNTERLVTIPGVVPP
                     STAWPGGCRFRDRCSYAWERCVNEHPPLYPVGNEHESRCHLAVEPLRRAERHTPLTAR
                     VGAGS"
     gene            complement(4886..5767)
                     /locus_tag="VLI40_06455"
     CDS             complement(4886..5767)
                     /locus_tag="VLI40_06455"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU96853.1"
                     /translation="MDADIRRDRPHWTRRIARHAGIASGVIAVIIIVALLAPWIAPYD
                     PIAQPDIIGLKNLAPSLSHPFGTDSFSRDVLSRCIYGARISLSVAALATIIAITLGTL
                     YGAIAGYAGGVVDAVMMRVVDAALSIPRVLLLIAILALWNGLPLWLLIVVLGATGWFG
                     LSRMVRAQVLSMRELDFVSAARALGAPGPRILLRHILPNVLPTIIVAATLGVGHVIIL
                     EAGLSYLGLGVQPPSASWGSIIQDGADQIGAAWWISLFPGLLIVTTAIACNSLGDALR
                     AVFDPRETAVTMAELDS"
     gene            complement(5757..6752)
                     /locus_tag="VLI40_06460"
     CDS             complement(5757..6752)
                     /locus_tag="VLI40_06460"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU96854.1"
                     /translation="MASTAGRGVVGTIVSRLVQAVIVVAIVTTIVFILIHIAPGDPFT
                     SAMDNPNVTEAMRARWRAMYGLDRPLLEQYALYLSNAARGDFGWSFSMHRPVIDVLKD
                     ALPNTLLLAGTALVIGFAGGIGLAVIQATRPGSRTDRTLGAGSMFFYAMPDFWLALMM
                     MLIFAYWLPWFPVAGAVDPVMHEYMGPLAAFGDRLKHLALPAITLALLSGAAIARYQR
                     AELLRVLPDDFVRTARAKGVGERRVMWVHVLRNALIPTISLLGLSLPVLFTGAVFIER
                     VFAWPGMGWVILNGVATRDYPLVTAGVIVAAATVTLGSLAADLLYSVADPRIRGR"
     gene            complement(6754..8526)
                     /locus_tag="VLI40_06465"
     CDS             complement(6754..8526)
                     /locus_tag="VLI40_06465"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HSU96855.1"
                     /translation="MTPTLHTPPPHVARGRRAALWCALALAAGFMGGCRETSRTESGG
                     GTLVVSTASDADNLFPPLIMSTQGRQVVEQIFEPLADVGDSLNVFGDAGFIPRLADSW
                     TWSADSMSIAFHLNPRALWHDGKPVRASDVRFTIALATNPALAAPIAPLLSNIDSVSV
                     TDSLTPVFWFKRRSAQQFYDAATVALIVPEHVYGGIAPAALASSDVLRHPVGSGRFRF
                     RRWVPNATIEIVSNRKHYRAPAKLDRVIWTIAPGDFSAASTRFLAGEADFFPSIRPEM
                     MAQIAKSPNLRTIEYPGFKFGYMVFNMRDPKNPKSPHPLFRDVAVRRALTMAIDRASL
                     VRNVFDSLAIPSIGPTVRAMGTSDTTIAQIPYDPDRAMRTLDSLGWRAGPDGIRAHDG
                     RQLAFTIMVPSSSKDRERLAVLMQDQFKRVGARVSILSVEPNVFEQQQATHAFDAAIE
                     TWLADPSPGGIRESWGSEAARTEGSKNYGDYANAIFDTRVDSALSARSMSTARLLFSR
                     AFQTLISDAPAIWLFEPRNVVGIQKRIHTAPLRADAWWAHLADWYVPADEQIARDRAG
                     AGTFTGTGERLASPPDSQPRKRGS"
     gene            8818..>9830
                     /locus_tag="VLI40_06470"
     CDS             8818..>9830
                     /locus_tag="VLI40_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine dehydrogenase
                     (aminomethyl-transferring)"
                     /protein_id="HSU96856.1"
                     /translation="MLSTLGYDSLDALIDATVPERIRFRSRLSIPAARTEAETLALLR
                     CIAARNKLFRSYIGMGFSDCVTPPVIQRNVIESPAWYTAYTPYQAEIAQGRLEALLNF
                     QTMVGDLTGLPIANASLLDESTAAAEAMGLAHALAGKAGKEVFLVADDCHPQTISVVQ
                     TRAAARGLTIHVLPYDKFEFGPQVFGALVQYPATDGAIRDYSSVCDDAHAHDALVTVA
                     ADLLSLVLLSPPGEWGADIVVGNTQRFGVPLGYGGPHAGFLATRDEYKRQIPGRIIGV
                     SRDADGAPALRMALQTREQHIRREKATSNICTAQVLLAVVASMYAVYHGPDGLERIAK
                     RVH"
BASE COUNT         1953 a         3115 c         3035 g         1727 t
ORIGIN      
        1 ctatcagttg ttcggcaggc cgtaccagct ctcgcttcag ggaacacgaa acgagatcgg
       61 cggcagctgg gatgcgctgg tgacgcaccc gttcatcacc gacctgcaac gcacgtcatg
      121 gcgcgcgtcg gccggttcat ctacgggtta ccggtatttc ctgcgcgggg atgcgccaaa
      181 cgccgcgctt gcatttacac gcgcgtactc cgacgtcggc ggggtgatcg cgttcggtcc
      241 gatccaccac gtctaccttg tgggtgcgac actgtccaag gagcgggagc gtaccgggcg
      301 catgccagtg ctcgtactcg attcggcggt ggttcccgac acgagcacgg cactcatcgg
      361 acgctactcc gagcatcgga ccagccgcat caatctgctg cttggcttcc gcaacacgag
      421 cttcatgcag gtgcgcgcat tcgacgcagt ggagggaacg caggacgtgc gcacgggtgt
      481 acagctggcg acgttgctcg ggcgcggaat caagctgacg ccaaaggacg agcgcgacta
      541 cttcgcctcg accgacgtct actacggtca cggcacgcct cagtcgtttg ccgggataga
      601 gttcatgggc gagcggcgcc gcgatctcga cacgcacaag tacgacggcg tcctcgcaag
      661 cgggagggca gcgtggtacg cgcatccgac ggcgaagcac acatcgatca tcgatgtcga
      721 atacagcggc ggctggaatc agcgagtgcc gtttcaggtt tcactggccg atcgcgatgg
      781 cggaataccg ggttacggat catcgcatct tggtggcgcg gcgcgaatgg tggtgcggct
      841 cgaggatcgt tatcgtctgg gccacattcg ccagttcgcg ggcctcgcca gcgcgttctg
      901 ggtggacgcg gggcgcttat gggcgggcga agctccgttc ggagtgaaca cgaacatcaa
      961 gtacgccgtg ggtgtcggtc tgctcgcggc gctgccgccg agatcgcgtc gcacgtggcg
     1021 cgtcgatttc gctgtcccgt tgaacgaccg cggcgactcc aagttcgaga ttcgcttcac
     1081 gaatcacgat ttcacacgct ggttctggcg cgagcccggc gacgttcaga cgagccgcga
     1141 gcgcgcgatt ccaaactcga tctacaactg gccctgacga ccccaaccac cagcaaggat
     1201 ggtccgcgcc ggtggggcac ggacgcatcc gcgcgtgtca ctccgccttc gcttccatca
     1261 ttcgccggat cggaatgacg agcgcggcac agaccgcggc ggcaatgaat agtgcgatcg
     1321 ctgtattcct gaacagcagc ggcatctcgt tgaggttgtt cggattcacg tggccgccaa
     1381 ccaggcccgc gacgaggttg cccagcgcat ccgccagaaa ccagatgccc atcatctgac
     1441 cgacaaagcg tcgcggtgcg agcttggtca tcgagctaag accgacgggg ctgagcgaca
     1501 gctcaccgaa cgcctggaac atgtagcaga tcaccagcca ccacatggaa acgtgcacgg
     1561 cgttgttcac cgcggcgccg gcgacgatcc ggttggacgc cacgagcatc acaacgaagc
     1621 tgacgccggc gaatgcgagg ccgatcgcaa acttggtggg actcgacaga tcgagccttc
     1681 tgcgcgcgag tgcgacccag atccacgcga ataccggtgc aagcgtgatg acgaagaacg
     1741 actcggcgga ctgcagccac aacgtcggaa cttcccagcc aaagaccgag cggttggtga
     1801 agtcgtgtgc aaacagattg agcgacgtgg gcgcctgctc gaacccagcc cagaagatcg
     1861 ttgcaaagac gaacagaaca acgatcacag cgactcgctt tttttcatcg ccggtgaggc
     1921 cagcgaagaa gaacatgtat gcaaagtaga ccacggccag agcgagcagc acgtacccca
     1981 tgcgttctgc aagcgccacg gggttgatgt gaatcacgcc gaggatcgtg agcagcacga
     2041 tgacgccgat cacagcgacg ctcgcgaacg taatgcgctt gaccttgctc tgttcggcgg
     2101 cggttgccgt cgacgcggcg ccgatcggac caagcgttgg tgtcatgcgc aacttgaaca
     2161 tgatgacgcc aatgatcatg ccgacgccgg ccgcaccgaa tccccagtgc cagccaactc
     2221 gttcaccgag atagccggtg atcagcggtg cgataagtgc gccggtgttg atgcccatgt
     2281 agaagatcga gaagccggcg tccctgcgcg caccgccttc agggtacaga tcgccgaccg
     2341 tcgccgagac gttgggcttg agcattccgg tgcccagcac gatgaagacg agaccgacga
     2401 aaaacgccga gtgagcgaag accgtcgaaa gcgctatcga gatgtgtccg cacgcgatga
     2461 gcactccgcc ccacagaacg gaccgttgca ggccaagcca tcggtcggcg atccatccgc
     2521 ccggcagtga cgccaggtac acgcatgccg cgtagatgcc gacgatcgaa gatgcaacgg
     2581 tgcggtcgaa accgaatccg cccgacaaca gcgccgccga catgaacaac accagcagag
     2641 ggcggattcc ataataggag aaccgctccc acatctccat gaagaagagc gtcgaaagcc
     2701 cgctcgggtg cccgaagaac gacttgttac ccgtccactg ctcgaagccc gtcggtggct
     2761 cgtcgtgggt gacagtcgct gcttgtggct gatcgaaaac tggcttctgt gttgccatgg
     2821 cgatggaggc tggaggaaat actggattga ttacagcagc tgacttggct gtttgatgca
     2881 cgccgcaaaa tgcgcaggcg tcttttcttc cagtggtgga acgatcgtcg tgcagtcatg
     2941 atccttgagc ggatgctgac agcgcgaata gaatacgcat cccggtggtg gattcgctgg
     3001 agatggcggc tctccctgaa gcacgatgcg ggcagtctga cgacccggct ccgggcgtgg
     3061 aaccgccgag agcaatgcct gcgtgtaggg cattatcggg tttgaataca gatcatccgc
     3121 agacgcgatc tcgacgatcc gtccgagata catcaccgct actcgatcgg cgatgtggcg
     3181 taccacggaa aggtcgtgcg cgatgaacag atacgtcagt cctcgatcgc gctgcagatc
     3241 ctgaagcaga ttgatgacct gtgcctgaac cgatacatcg agcgccgaca ccggctcgtc
     3301 acaaacgatc atatccggct cgaccgagag cgcccgggcg acacctatgc gctggcgctg
     3361 gccgcccgag aattcgtgcg gatagcgcga cgcgtaatcc ggattcaagc ccacttcctc
     3421 gaacagggtc ttcacccggt gatcggccgc acggccctcg gcgagatgat ggatcagcat
     3481 tccttccctg acggccgcgc caacggtcat tcgcgggttg agcgacgaga agggatcctg
     3541 aaaaaccacc tgcatcttcc gtctcatact tcgcagcgcg gctccgcgca gtgtcgcgac
     3601 gttgatgccg tcgaacacca cagcgccggc cgttggctcg atcagtcgaa gaatcgagcg
     3661 gcccatcgtc gtcttgccgc aacccgattc gccgaccacg cccagagttt caccgcgcgc
     3721 tatgtcgaac gagacatcgt tgacggcacg aatcgccgcg gcgttgcgtc cgaggagact
     3781 ctgctgccat ccctggcgta ccgggaagtc cttgcgcagc cccgttacct ggagcagtgc
     3841 cggttccgca ggcgcatgcg tcacgaacca gccccaaccc gtgcagtcag tggcgtgtga
     3901 cgctcggctc tgcgcaacgg ctcgacggcg agatgacagc gcgactcgtg ctcgttgccg
     3961 acagggtaga gcggtggatg ttcgttcaca catcgctccc acgcatagct gcagcgatcg
     4021 cggaatctac agccacctgg ccacgctgtc gaaggcggta caacccctgg aatcgtcacg
     4081 agtcgctcag tattgcggtc gagtctcggc atcgcactca tcaggccttc ggtatatggg
     4141 tggtgcggcg catcgaacaa ttccgttacc gtcgcgcgct cgactacttc gccaccgtac
     4201 atcaccacca ctctatccgc gacttcagcg acgacaccca ggtcgtgtgt gatgagcagt
     4261 accgccatgc cgagctgctc cttgaggcgt tgcagcaact cgagtatctg tgcctggatc
     4321 gtaacgtcca gcgcggtcgt tggctcgtcg gcgatgagca gtgccggcct gagcacgagc
     4381 gccatcgcaa tcatcacgcg ttggcgcatt ccgccggata gctggtgcgg gtattccgat
     4441 gcgcgctcgc gcggcgccgg tatgccggtg agtgcgagca tttccaccgc gcgctcccac
     4501 gcgtcgtgat gcgatgcgtc agtgtgtacg cgtacaactt ccgcaatctg ttcaccgact
     4561 gtaagaaccg gattgagcgc cgacatcggt tcctggaata tcatcgcgat gcgattgccc
     4621 cggatcctgc gcatctcgtc gtcgctcagc tgcaggagct cgcgtccctg gaagttgatg
     4681 ctactgccgg tctcgatcct gccgggtgga cgaatgagtc tcaggatcga aagcgcggtg
     4741 acggatttgc ccgagccgga ttcaccgacg accgcgacgg tctcgcctgc cgcgacgccg
     4801 aacgagacgc cgtccaccgc gcgcgccacg gcgccgccat cgtggaaata cgtccgcagg
     4861 tcggtgaccg acagcagcat ctccgtcacg agtccagctc ggccatcgtc accgcggtct
     4921 cacgcgggtc gaataccgcg cgcagcgcat cgcccagcga gttgcaggca atcgcggtcg
     4981 tgacaatgag cagtccggga aaaagtgaaa tccaccacgc agcgccaatc tgatcagctc
     5041 catcctgaat tatgctaccc cagcttgcgc ttggtggctg aacgccaagc ccgaggtagg
     5101 acagccccgc ttccagtatg atgacgtgcc ccacgccaag tgtagcagcg acgataatcg
     5161 tggggagcac attcggtaag atgtgccgca gaagaatcct gggacctgga gcgccgagcg
     5221 cccgggccgc cgaaacgaag tccagctcac gcatcgataa tacctgcgca cgcaccattc
     5281 tgctgagccc gaaccagccc gtcgcgccga gcaccacgat gagcagccag agtggaaggc
     5341 cattccacag tgcgagaatc gcgatcagca acagcacgcg cggaatagag agtgcagcgt
     5401 cgacgacgcg catcatcacc gcgtcgacca cgccgcccgc gtaacccgcg atcgcgccgt
     5461 acagcgtacc aagtgttatc gcaatgatgg tcgcaagagc ggcgacggat agcgagatgc
     5521 gggctccgta gatgcatcgg ctcagtacat cgcgactgaa tgaatcggtg ccgaatggat
     5581 ggctcagcga tggcgcgaga ttcttgagtc cgatgatgtc cggctgggcg atcggatcgt
     5641 agggagcgat ccacggcgcg agcagggcga cgatgatgat caccgcgatc acgcctgaag
     5701 cgataccggc gtgtcgcgcg atccggcgcg tccagtgcgg ccgatcgcgt cggatgtcag
     5761 cgtccacgaa ttcgcggatc ggcgactgag tatagcagat ccgcggccag gcttccgagt
     5821 gtaacggttg ctgccgcgac gatcactccg gcggtaacca gcggatagtc gcgtgtcgcg
     5881 acgccgttga gaatgaccca gcccattccc ggccacgcaa agacacgctc gatgaataca
     5941 gcgccggtga acagcactgg cagtgacaat ccgagcagac tgattgtcgg tatgagagcg
     6001 ttgcgcagca cgtgtaccca catcacccgt cgctcgccga cacccttcgc ccgcgcggta
     6061 cgtacgaagt catccggcag gacgcgcaat agctccgcgc gctggtaccg cgcgatcgcc
     6121 gcgccggaga gaagcgcgag cgtgattgcc gggagcgcga gatgcttcaa tctgtcgccg
     6181 aaggccgcaa gcggtcccat atactcgtgc atcaccggat ccacggcgcc ggctactgga
     6241 aaccacggca accagtaggc gaagatcagc atcatcatga gtgcgagcca gaaatcgggc
     6301 atcgcgtaga agaacatcga gccagcgccg agcgtgcgat cggtgcggga gccaggtcgc
     6361 gtagcctgaa tcacggcgag tccgattcct cccgcgaagc cgatcacgag agcagttccg
     6421 gcaagcagca aggtatttgg caacgcgtcc ttcagtacgt cgatgacagg gcggtgcatc
     6481 gagaatgacc agccgaagtc gccgcgcgct gcgttgctca gatacagcgc gtattgctcc
     6541 agcagtggcc tgtccagtcc gtacatcgcg cgccaccttg cgcgcatggc ctcggtgacg
     6601 ttcgggttgt ccatcgcgga cgtgaacgga tcgcccggcg cgatgtggat gagaatgaag
     6661 acgatagtcg tgacgatcgc gacgacgatg acagcctgca cgaggcgtga tacgattgtg
     6721 ccgacgacac cacgccccgc ggttgatgcc aagctagctg ccccgtttgc gcggctgcga
     6781 gtcgggtggc gacgcaagac gctcaccggt accggtgaaa gtacctgcgc cggcacggtc
     6841 gcgcgcgatc tgctcgtctg ccggaacata ccagtctgcc aggtgcgccc accatgcgtc
     6901 ggcgcgcaac ggtgcagtat gaatgcgttt ctggatcccg accacgttac gcggctcgaa
     6961 cagccagatt gcaggcgcgt cggagatcag cgtctggaat gcacgggaga acaacagccg
     7021 tgcggttgac atcgatcgcg cgctgagtgc gctgtcaacg cgcgtgtcga agatggcgtt
     7081 cgcataatcc ccgtagttct tgctgccctc cgtacgggcg gcctccgatc cccagctctc
     7141 acggatgcca ccaggactcg gatccgcgag ccatgtctcg atcgccgcgt cgaacgcgtg
     7201 cgtcgcctgc tgttgttcga acacgttcgg ctcgacggat agaatgctca ccctggcgcc
     7261 gacgcgtttg aactgatcct gcatcaacac cgcgagccgc tcacgatcct tgctcgatga
     7321 cggcaccatg atcgtgaacg cgagttgcct gccatcatgc gctcgtattc cgtccggtcc
     7381 cgcgcgccag ccgagcgagt ccagagtgcg catcgcgcgg tccggatcgt acgggatctg
     7441 cgcaattgtc gtatcgctcg ttcccatcgc gcgcaccgtc gggccgatgc tcgggattgc
     7501 aagcgagtcg aatacgttgc ggaccagcga cgcgcggtcg atcgccatcg tgagtgcgcg
     7561 tcgcaccgcg acatcgcgga acaacggatg cggcgacttt ggattcttcg gatcgcgcat
     7621 gttgaaaacc atgtatccga atttgaatcc ggggtattcg atcgtgcgca gattcggcga
     7681 cttcgcgatc tgcgccatca tctccggccg gatgctcggg aagaagtccg cctcgcctgc
     7741 gagaaaccgc gtcgacgcgg cgctgaagtc acccggtgcg atggtccata tgacgcgatc
     7801 cagctttgcc ggcgcgcggt agtgcttccg gttggacacg atctcgatcg ttgcgttcgg
     7861 aacccagcgg cgaaacctga agcgtccgga ccccactgga tgccgcagca cgtccgacga
     7921 tgcaagcgcc gccggagcaa tgccgccata aacatgctcc ggaacgatga gcgcgaccgt
     7981 agccgcatcg tagaactgct gtgccgaccg ccgcttgaac cagaataccg gcgtgagcga
     8041 gtcggtgacg ctcaccgagt cgatgttcga cagaagcggc gcgatgggtg ccgccagagc
     8101 gggattcgtg gccagtgcga tggtgaacct cacgtcgctc gcccgtaccg gtttgccgtc
     8161 gtgccagagt gctcgcgggt tcaggtgaaa cgcgatcgac atcgagtctg ccgaccacgt
     8221 ccagctatcc gccagccgcg gaatgaatcc ggcatcgccg aacacgttga gagaatcgcc
     8281 gacatcagcc agcggctcga atatctgctc caccacctgc cgcccctggg tggacatgat
     8341 gagcggcgga aagaggttgt ccgcgtcgga cgccgtcgag actaccagcg ttccgccgcc
     8401 actttcggtg cgagaggttt ctcggcagcc tcccatgaat ccggcggcaa gcgccagcgc
     8461 gcaccaaagc gcagctcggc ggcctctggc cacgtgggga gggggagtat ggagcgttgg
     8521 agtcatcgag tggtatggtc gcgtctgggt tgtcctcgat gagtatcgtc agcgctacat
     8581 catcgcgcca ttcggtgagc tgcacaagat tcgccgccgg ataggggctg ccgcacgcga
     8641 ttaaatttac gggctgaggg cgctctcgca gggcgtcctc ctacgcgtcc aatgccgact
     8701 tcgccgtaca atccaatttc tcgatagatg gcttccgttc aggctccttc cgcgctcgaa
     8761 agcgccgatc aatttgcacc ccgccacatt ggcccgacgc cggctgaagt atccgagatg
     8821 ctctccaccc tcggctacga cagcctcgac gctctgatag atgcgaccgt tcccgagcga
     8881 atccgattcc ggagcaggct atcgattccg gcggccagaa ccgaggcgga aacgctggcc
     8941 ctgctccgat gcatcgccgc ccgcaacaag cttttcagat cgtatatagg aatgggcttt
     9001 tccgactgtg tgacgccgcc ggtcatccag cgaaacgtca tcgagagccc ggcctggtac
     9061 acagcttaca cgccctatca ggcggagata gcccaggggc gcctggaagc gctgctgaac
     9121 ttccagacca tggtcggcga cctgaccggc ctcccgatcg ccaatgcctc gctgctcgac
     9181 gagtccaccg ccgccgccga agcgatgggg cttgcccacg ccctcgccgg caaggcgggc
     9241 aaggaagtgt ttctcgtcgc cgacgattgc cacccgcaaa ccatcagcgt agtgcagacc
     9301 cgcgccgcag cgcgcggact tacaatacac gtccttccct acgacaaatt cgagttcggt
     9361 ccgcaggtgt tcggcgcgct cgtacagtat ccggcgacag acggtgccat tcgcgattat
     9421 tcgtcggttt gcgacgacgc tcacgcgcac gatgcgctcg tgacggtcgc ggccgatctg
     9481 ctcagcctgg ttctgctgtc accgcccggt gaatggggcg ccgacatcgt cgttggcaac
     9541 acgcagcgct tcggtgtgcc gctcggttac ggtggtcccc acgccggctt tctcgcgaca
     9601 cgcgatgagt acaagcgcca gatccccggc cgcatcatcg gtgtttcgcg cgatgccgac
     9661 ggagcacccg cgctccgcat ggcgttgcag acccgcgagc aacacatccg ccgcgagaag
     9721 gcaaccagca acatctgcac ggcacaggtt cttctcgccg tcgtagcgag catgtacgcc
     9781 gtgtatcacg ggccggacgg actcgagcgc atcgcgaagc gcgttcacca
//
LOCUS       DATIMD010000280         2768 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3858686, whole genome shotgun sequence.
ACCESSION   DATIMD010000280 DATIMD010000000
VERSION     DATIMD010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2768
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3858686"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(105..899)
                     /locus_tag="VLI40_06475"
     CDS             complement(105..899)
                     /locus_tag="VLI40_06475"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSU96857.1"
                     /translation="MRVVIVDDEPLARRGIRQLLADHPDAEIVAECPSGAVALAAVQT
                     LSPDLLFLDVQMPEMDGFEVVRRIGVERIPSVVFVTAYDEFAVNAFEASAVDYLMKPV
                     GPERFSAAMRRVRERQTETAALARVAELQALLTRVTPAVRQPLLVTTAKGVIRIDPDE
                     IDWIGADDYYAVLHVGTKHYLLRESLASLEERLPAGRFVRVHRSAIVNCSRVKEIRRG
                     ALVLSDGTTLVTSRRRRAAVRVALGKAPTYVDSSIVLTDNGNQAVE"
     gene            complement(899..2056)
                     /locus_tag="VLI40_06480"
     CDS             complement(899..2056)
                     /locus_tag="VLI40_06480"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSU96858.1"
                     /translation="MPFDVILVAVWAIPAALAVIETYTFARMSGRPYSLPSIVLREGA
                     TWATYGILAPLIFRLANRFPLRAPSVRSHLSLHVVGAILAGAVSAAMGTLVGQLTRNA
                     SDSAQFLTMSVPHMFLSWWLGDLAVAFLSYFAVVGVAHAMSYFREAQQRREDALRLES
                     QLADARLAALQGRLHPHFLYNTLNAITVLVRDGDIRRSTRMLELLSTMLRRVLAGSLP
                     QIVPLRTELALLRQYLEIEEVRFSDRLVVAIDVDPRVSNAGVPALVTQPLAENVIRHA
                     VANTLAHVTLAITARVTTTPEGRDTLELTISDDGPGLAAGWERRRIEHTGLSATALRI
                     TTLYGSDGSLEIRARADGGVISTVRIPYVQLADDSDDVLVAADDDLTLQAV"
     gene            2305..>2768
                     /locus_tag="VLI40_06485"
     CDS             2305..>2768
                     /locus_tag="VLI40_06485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96859.1"
                     /translation="MSIFWRRAAIVAVVATAVGLLMFGYHYLDFVTRGVSAPIYDPLV
                     SELTGAWGAAVLLMGPVLPIVRRIQRRGGALAIPSHLAVLVGFSILHTSWNAVTRQII
                     YAIFGLGHYDYGIMPTRYFMEFPMDVIVYVLFVSLVMLIDHYGASRDREVQVA"
BASE COUNT          527 a          843 c          869 g          529 t
ORIGIN      
        1 actcatagtt ttgtgcatcg ctggagcgca ggacgatcgc tgcgccccag ctgatgtgga
       61 gacagtaatg atgcagagac ttatcgccac tgctgacgcg agcttcattc gaccgcctgg
      121 tttccgttat cggtgagtac gatggaactg tccacgtacg tcggcgcctt gcccaatgca
      181 acccgcaccg cggcgcgccg gcgtctgctg gtaacgagag tcgtgccatc actcagcacg
      241 agcgctccgc ggcgaatctc cttcaccctg ctgcaattca cgatcgccga tcggtgaacg
      301 cgcacgaagc gaccggccgg cagacgctct tccagtgatg cgagcgattc ccggagcagg
      361 tagtgcttcg ttccaacgtg caggaccgcg tagtaatcat cagcgccgat ccagtctatc
      421 tcgtccggat cgatgcgtat cacacccttc gctgtagtaa cgagcagcgg ctgtctgacg
      481 gcgggagtta cccgtgtcaa cagagcttgc agctctgcaa cgcgggcaag cgctgctgtt
      541 tcggtctgac gctcgcggac gcgacgcatc gcggcggaga accgctcggg tccgacgggc
      601 ttcatgagat agtcgacggc cgacgcctcg aacgcattca cggcaaactc atcgtatgcg
      661 gtcacgaaca cgactgacgg aatgcgctcg acaccgatcc gccgaaccac ttcgaatcca
      721 tccatttccg gcatctgtac atcgagaaac aacagatctg gcgagagcgt ctgtacggcg
      781 gcaagcgcta ccgcaccgct cggacattcg gcgacgatct cggcatcggg atggtcggcc
      841 agcaactggc gaatgccacg tcgcgccagc ggttcgtcat cgacgatcac tacgcgcatc
      901 agactgcctg cagcgtcaga tcgtcatcgg ctgcaaccag cacgtcgtcg ctatcgtcgg
      961 cgagttgcac gtacggtatg cgcaccgtgg aaatgacccc gccgtcagcc cgcgcacgta
     1021 tttcgagcga gccatcggag ccgtagagcg tcgtgatgcg caatgctgtg gccgaaagtc
     1081 cggtatgttc gatgcggcga cgctcccagc cggctgcgag tccgggaccg tcatccgata
     1141 tggtcagctc cagtgtgtcg cgtccttccg gagtggtcgt gacacgtgcg gtgatcgcaa
     1201 gcgtaacgtg cgccaatgtg ttcgctaccg cgtgccggat cacgttctcg gcgagcggtt
     1261 gagttacgag cgctggaacg ccggcgttgc tgacacgtgg atcgacgtcg atcgcaacga
     1321 cgaggcggtc ggagaagcgc acctcttcta tttccaggta ctgccgcaac agcgcaagct
     1381 cggttctcag cgggacgatc tgcgggagtg atccggccag cactcgacgc agcatggtgc
     1441 tgagcagctc cagcatgcgt gtcgaccgac gtatgtcgcc atcgcggacg aggacagtta
     1501 tggcgttgag cgtattgtac agaaagtgcg gatgcagacg gccctgcagg gcggcgaggc
     1561 gcgcatcggc gagctgactc tcgagacgaa gcgcgtcctc gcgtcgttgc tgggcctcgc
     1621 ggaaatagct catggcgtgt gcgacgccga caaccgcaaa gtacgacaga aacgcaacgg
     1681 cgaggtcgcc gagccaccag gacagaaaca tgtgcggtac gctcatagtc agaaactgag
     1741 cggagtcgga cgcgttgcgg gtgagctgac cgactaaggt gcccatagcg gctgacacgg
     1801 cgccagccag tatggcaccg acgacgtgga gactcaggtg ggagcgcaca gacggcgcgc
     1861 ggagcggaaa tcggttcgcg agccggaata tcagcggagc cagtatgccg tacgtggccc
     1921 atgtcgcacc ctcgcgcagc acgatcgacg ggagcgaata cggccgcccg ctcatccgcg
     1981 cgaaagtgta cgtttcgatc accgcaagcg cggctggtat ggcccagacc gcgacgagaa
     2041 ttacgtcgaa cggcacacgg atccgcgcgc ggtccggtac atcctggtga gcgcggcttc
     2101 cctggtttgt gctgggaacg gagactggca tcatcgcgac gctaacatgg gtgcgctcgg
     2161 ttcacaagat cggatctgca ggcggttcgt cccgggttgc gacccgttcg tcccatggtc
     2221 atcgacaacc ggcgcggcgg gcatttagct atacactgaa cttacgcgtt tcgtctcgaa
     2281 ccatggcttc atgagcttca tgcgatgagc atcttctggc ggcgggcggc gatcgtcgcg
     2341 gtggtcgcca ctgcggtcgg cctcctgatg ttcggctacc actatctcga cttcgtgacc
     2401 cgcggagtgt ccgcgccgat ctacgatcct ctcgtcagcg agctgactgg cgcctggggc
     2461 gcggcagtcc tgctgatggg tcccgtgctt ccgattgtgc gcaggattca gcggcgtggc
     2521 ggagcgctcg ccattccgag tcatctcgcg gttctggtcg gcttctcgat tctgcacaca
     2581 tcatggaacg cggtgacacg acagatcata tatgcgatct tcggtctcgg gcactacgac
     2641 tacggcatca tgccgacacg ctatttcatg gagtttccca tggatgtgat cgtgtacgta
     2701 ctgttcgtat cactcgtgat gctgatcgac cactacggcg cgtcacgcga ccgcgaggtg
     2761 caggttgc
//
LOCUS       DATIMD010000281         4071 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4437974, whole genome shotgun sequence.
ACCESSION   DATIMD010000281 DATIMD010000000
VERSION     DATIMD010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4071
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4437974"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1205
                     /locus_tag="VLI40_06490"
     CDS             <1..1205
                     /locus_tag="VLI40_06490"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSU96860.1"
                     /translation="RELYNVQGAYYSFVALDRRRAIAAFRRAVQLDSTNVDAANSLAV
                     TLSSARDVAGAVPMYKLALANDSADGTILGNLAGSYLSLGRYRETDSVLALFASRHIP
                     FPVGPMRFQVLWSQSKYDSAEKLARNRVDGADAVHAARFLEALANVVQLRGRLRDAER
                     LSTQADVALTRTRGHPADPYATVFSQATRDGVIRGNASQGIAELDSTFRAYPIASAPA
                     TTFQNLSLAIQAYAQLGSAAKARDALRQLEARLDSTTRRPAVVSIARDRGVIAMAEGK
                     TDSAVAYFRQGDVEADGLPTVNCAACTPYLIGIAYDQGHRADSARKYLTEYVEIRSGS
                     HFTIDQYYLALTLYRLGELYRDAGDSKRAISYYSRFVDLWKNADPELQPRVIEARKQI
                     AQLLHANG"
     gene            complement(1219..1626)
                     /locus_tag="VLI40_06495"
     CDS             complement(1219..1626)
                     /locus_tag="VLI40_06495"
                     /inference="COORDINATES: protein motif:HMM:NF021514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HSU96861.1"
                     /translation="MKTAIADLSDLLRRMSPVHNPGVFVFATLPAGSPIEMQAVVACV
                     RESEGTSVVLAEADAIRLGLPVLFRSAWLTLTVHSDLNAIGLTAAVSIALAQAGISCN
                     VVAGAHHDHIFVPHDQADAAMAALIQLQQTADQ"
     gene            1785..2675
                     /locus_tag="VLI40_06500"
     CDS             1785..2675
                     /locus_tag="VLI40_06500"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSU96862.1"
                     /translation="MPIRVRSFAAVAILLTFGPALGAALGAQQVPKAIYVDPPRDAQN
                     PARMEVLHIPSGDVKINGVAYLAAGAGVHPTFVLLHGLPGNEKNLDLAQAVRRAGWNA
                     ITFNYRGSWGSPGVFRFAQNLEDADAVLAFLRDPANVKTLGIDTTHLVLAGHSMGGWV
                     TVLTAAHQHGLEGAVLISAADMAAFGGTSRASIVARMATDMESLAGTSPEQMADEVMA
                     HKGDWNFGTAYAGLASVPMLVITSNDGLAPTDDALVAAVRARGNTKVATAHFPTDHSY
                     SDQRIALESAVIEWLEKMAR"
     gene            complement(2750..3394)
                     /locus_tag="VLI40_06505"
     CDS             complement(2750..3394)
                     /locus_tag="VLI40_06505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96863.1"
                     /translation="MRTLSRSAVVLAAVVLAACDGSTLVQPKQQDAAVSSSQNPAAAT
                     GKPEIDPTYANGTTVYMIGPHMIVGARETMPNVYAHAEELYIVAYPQATLPVPGVQPI
                     TLPSGYQPQCDPCFHPGLPAMFVFHDHVVTGAPGMGANGTAGVYKAPWKIIVLVYNPA
                     YVALPSFRPVTSEAALDAAEAAGNVFLPINPDGANPYEVDTGNLLICPLVSSHA"
     gene            3739..>4071
                     /locus_tag="VLI40_06510"
     CDS             3739..>4071
                     /locus_tag="VLI40_06510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96864.1"
                     /translation="MTTARRSTLITFPTLFALALLTIAGCDPHVAPVDMVLRNGSVVT
                     MDSTIPAGQAIAISSDTIVAVGSDSAIQRYVGPHTKVIDLGGHLAIPGFNESHGHFTG
                     LGQTLTELR"
BASE COUNT          763 a         1287 c         1280 g          741 t
ORIGIN      
        1 aacgtgagct gtacaacgtc cagggcgcgt actacagttt cgtggcactc gatcgtcggc
       61 gggcaatcgc ggcgttccgc cgagccgtac agctcgattc caccaacgtc gatgcggcga
      121 attcgctcgc cgtcacatta agtagcgcgc gtgacgtggc cggcgccgtg ccgatgtaca
      181 agctcgcgct cgccaatgac tcggccgacg gcacgatcct cggcaacctg gccggctcat
      241 atctgtcgct gggccggtac cgggagaccg attccgtact ggcgctgttc gccagccggc
      301 atatcccttt tcccgttggg ccgatgcgct tccaggtgct ctggagtcag agcaagtacg
      361 attcggcgga aaagctcgcg cgcaatcgtg tagacggcgc cgacgcggtg cacgccgccc
      421 gtttcttgga agcactcgcc aacgtcgtgc agttgcgcgg ccggctgcgt gacgccgagc
      481 gcctctccac gcaggcggac gttgcgctga cccgcacccg cggtcaccct gcggatccgt
      541 acgcgacggt cttctctcaa gcgacacgcg acggcgtgat tcgcggaaac gcttcgcagg
      601 ggattgcgga gctcgattcg acgtttcgcg cgtacccgat agcgtcggca cccgccacga
      661 cgttccagaa tctatctctg gccattcagg cctatgcgca actcggctcc gctgcaaagg
      721 cacgcgacgc gttgcgccag ttggaggcca ggctcgactc gacgacccgc cgccctgccg
      781 tcgtcagtat agcgcgcgat cgcggggtga tcgccatggc agagggaaag accgacagtg
      841 ctgtcgcata tttccgccag ggcgacgtcg aggccgacgg acttccgacc gtcaactgcg
      901 ctgcctgtac gccgtacctc atcgggattg cctacgacca gggccatcgt gccgactcgg
      961 cacgcaagta cctgaccgaa tatgtcgaga tacgaagcgg cagtcacttc actatcgatc
     1021 agtactacct cgcgctgacg ctctaccggc tgggagagct gtaccgggat gccggcgact
     1081 cgaagcgcgc gatctcgtat tacagtcggt tcgtcgacct ctggaagaac gccgacccgg
     1141 agctgcagcc gcgcgttatc gaggcacgga agcagatagc ccagctgctg cacgcgaacg
     1201 ggtgatgtgg tgatctaatc actgatccgc agtttgctgc aactggatca gtgctgccat
     1261 cgcggcgtcc gcctgatcgt gcggtacaaa gatgtgatcg tggtgcgctc ccgcgacgac
     1321 attgcaactg atgccggctt gtgcgagcgc tatggaaacg gccgctgtga gtccgattgc
     1381 attcaagtca gagtgcactg tcaacgtcag ccacgcagac cgaaatagta ccggcaggcc
     1441 caggcggatc gcatccgctt cagcaagaac gacagatgtg ccttcggact ctcgtacgca
     1501 ggcaactact gcctgcatct cgattggtga gcccgcaggc agcgtcgcga agacgaagac
     1561 gccgggatta tggaccggcg acatcctacg caataggtcg ctcagatctg cgattgccgt
     1621 cttcacttga gtcgctccat tgcagcaggg cggtaacact agtcacatgt gaggatccgg
     1681 aagatacgcc gccgtgggcg acgacgcagt cttgcggcgc gagaatgcgt cggctacgct
     1741 tcacgcgctt cgaaggctcc cgactccaac ccaggctccg ttcaatgccg atccgcgttc
     1801 gttcgttcgc cgctgtcgcc atactattga ccttcggccc cgcgctcggc gctgcgctcg
     1861 gcgcccagca agttccgaaa gcgatctatg tcgacccgcc gcgcgacgcg cagaaccccg
     1921 cacgcatgga agtgctgcac attccgtcgg gcgacgtgaa gataaatggc gtcgcgtatc
     1981 tggcagctgg tgcgggtgtg catccaacgt tcgtgctgct gcacggatta ccgggcaacg
     2041 agaagaacct ggatctcgca caggcggtgc gacgcgccgg ttggaacgcg atcacattca
     2101 actatcgcgg atcgtgggga agtcccggtg tattccgatt cgcgcagaac ctggaggacg
     2161 cagatgcggt gctcgcattc ctgcgcgatc ccgccaacgt gaaaacgctc ggtatcgata
     2221 ccacacatct cgtcctcgca ggacacagca tgggtggctg ggtgacggtg ctcaccgcag
     2281 cgcatcaaca cggactggag ggagccgtgc tcatctcggc ggcggacatg gccgcgttcg
     2341 gcggaacgtc ccgagcaagc attgtcgcca ggatggccac cgatatggag tcgctcgccg
     2401 gtacgagccc cgagcagatg gccgacgagg tgatggcgca caagggcgac tggaacttcg
     2461 gtaccgcgta cgctggcctc gcatccgttc ccatgctcgt catcacatcg aacgacggtc
     2521 tggcaccgac ggacgatgcg ctggtcgcag ccgtgcgcgc gcgcggcaat acgaaggtcg
     2581 cgaccgcgca ctttcccacg gaccattcgt attccgacca gcgcatcgca ctcgagagcg
     2641 cagtgatcga gtggctcgag aagatggcgc ggtagccacc gtcgggcggc gcttgcgcgc
     2701 ggggaatacc gaggtcttgc gtcgtgcgtc gacgcaagac ctcgaacgcc tacgcgtgac
     2761 tcgagaccag gggacagatg agcaggttgc ctgtgtcgac ttcgtacggg ttcgcaccgt
     2821 ccgggtttat cgggaggaac acattccctg ccgcttctgc cgcgtcgagg gccgcttcac
     2881 tcgtgaccgg cctgaagctc ggcaacgcca cgtaagccgg gttgtacacg aggacgatga
     2941 tcttccacgg cgccttgtac acgcctgcgg tgccgttggc gcccattccc ggggcaccgg
     3001 tgaccacgtg gtcgtggaag acgaacatcg caggcaaccc cgggtggaag cacgggtcgc
     3061 attgcggctg atacccggac ggcagcgtga tcggctggac tcccggcacg ggaagcgtcg
     3121 cctgcgggta cgcgactatg tagagctcct ccgcatgcgc gtacacgttg ggcatcgtct
     3181 cccgggcacc cacgatcatg tgcgggccga tcatgtagac agtcgtgccg ttcgcatacg
     3241 tgggatcgat ctctggtttg ccggtggccg cggcgggatt ctgcgaagac gacaccgcag
     3301 catcctgctg tttcggctgg acgagcgtcg agccgtcgca agcggctaac accaccgccg
     3361 cgagcacgac cgcagatctg gagagcgttc gcatctgatc cgtccttgaa gagtgggtga
     3421 gtgagactgg cggcgcgatg gtcacggagg tgcgccgatt gacgccagat aggatacacc
     3481 cctatgctat aatgtcaagc ggaatgaacg catgccggca ggagagttgg caggcttgag
     3541 ggaaactgcg tatctgcttc ggtcgcctgc gaacgcggcg cgattgcttg cggcgttgat
     3601 gcgcgcgcgg aaaggtttta cgaaatccca cgacctcgcc gaactaagga ctcaactcgg
     3661 gctcgcggcc gcggcatccg cgctaatatt atggcgctcc caggtgatac gcacgccacg
     3721 caacagaggc ctgtactgat gacaaccgca cgtcgatcca cgctcataac ctttccaact
     3781 ctcttcgcgc tggcgttgct gacgatcgcg ggatgcgacc cgcatgtcgc gcccgtcgac
     3841 atggtgcttc gcaacggcag cgtggtgacg atggattcga ccatccccgc cggtcaggcg
     3901 atcgcgattt cgagcgacac catcgtagcc gtcggctcgg acagtgcgat tcagcgctac
     3961 gtcggtccgc acacgaaggt catcgacctc ggaggacacc tcgcgattcc gggattcaat
     4021 gagtcgcacg gtcacttcac cggactcggt cagaccctca cggagctgcg t
//
LOCUS       DATIMD010000282         3307 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1552006, whole genome shotgun sequence.
ACCESSION   DATIMD010000282 DATIMD010000000
VERSION     DATIMD010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3307
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1552006"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..635
                     /gene="queA"
                     /locus_tag="VLI40_06515"
     CDS             <1..635
                     /gene="queA"
                     /locus_tag="VLI40_06515"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051075 - S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HSU96865.1"
                     /translation="TPLADSDAIERYGHIPLPPYITRADTPPDAERYQTVYAAETGSA
                     AAPTAGLHFTPEILDELRTHGVEIADVILHVGAGTFKPVEVEDPAQHVMHEEWYEVPA
                     VTAQRIAQARARGAKTWAVGTTSVRTLESASDENGVIATGSNETSIFIRPPYTFRAVD
                     HLLTNFHLPHSTLIMLVAAFAGYDLTMRAYATAVEERYRFFSYGDAMLII"
     gene            641..1783
                     /gene="tgt"
                     /locus_tag="VLI40_06520"
     CDS             641..1783
                     /gene="tgt"
                     /locus_tag="VLI40_06520"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HSU96866.1"
                     /translation="MPFSFNVLQSQGAARAGVFTTPHGDVATPAFMPVGTLATVKALD
                     PDDLHRAGASMVLSNAYHLHLRPGDELIRDMGGLHRFMGWNGPMLTDSGGFQVFSLET
                     LRTINEEGVEFRSHINGDAKFFTPETVIGIERNIGADVMMQFDHVIPGQSSEPVARDA
                     MERSVRWLARCLAAFDASAATAPFEQTLFPIVQGGIHAHLRRESVERIAEIAHWTGFG
                     VGGLSVGESKPDMYAMLEVTDAAIPRDRPRYLMGVGFPEDLIEGVRRGVDLFDCVAPT
                     RMGRTGAVFTHDGRLNVKRAELRADPGPLDRDCDCPTCTRFSRAYLRHLFVSGEILGL
                     RLLSLHNVHFLIRLMRTAREHIAGGTFDQWSADWLARYFATPQITR"
     gene            1780..2100
                     /gene="yajC"
                     /locus_tag="VLI40_06525"
     CDS             1780..2100
                     /gene="yajC"
                     /locus_tag="VLI40_06525"
                     /inference="COORDINATES: protein motif:HMM:TIGR00739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HSU96867.1"
                     /translation="MNNPLVGTILMYGAIGAIFYFVLLRPQQKQKKEHDTMLRSLRRG
                     DEIVTAGGVVGEVTYIAQQTKDGNPVISLDDRVTIKSGDTRLIVERGRIAKIMRKNSA
                     GAEE"
     gene            2107..2703
                     /gene="def"
                     /locus_tag="VLI40_06530"
     CDS             2107..2703
                     /gene="def"
                     /locus_tag="VLI40_06530"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: protein motif:HMM:NF001159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HSU96868.1"
                     /translation="MAVLDIRVLGDPILRERTDPLAAVTAELRALVADMFDTMHAAEG
                     IGLAAPQVGRKERVFVMDVDDDPMTMVNPEIVVREGLERAEEGCLSIPEIFGDVDRAT
                     RIVVRALDADGKPFEVELTGLAARCVQHELDHLDGKLFIDYMSLIKRKFTARKWEKEA
                     ANYPGFIRKLEPGKATSRKSRSRNKTTDPAAPPFEPEL"
     gene            2711..>3307
                     /gene="fmt"
                     /locus_tag="VLI40_06535"
     CDS             2711..>3307
                     /gene="fmt"
                     /locus_tag="VLI40_06535"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HSU96869.1"
                     /translation="MRVMFWGTPEFAAPALRALVGEGFDVCAVVTRPDRPAGRDRVLT
                     QPAIKQIALKESLPVFQPESPREEEFQDLIRAVAPDLSVVVAYGHILPRIVIDAPALG
                     TLNIHASLLPALRGASPIQSAIRQGLTETGVTIMRMVPALDAGPIILQSRTPVADDET
                     YGELQGRLSELGALALIEALTLIELGHTTEKPQDDSLAT"
BASE COUNT          632 a         1094 c         1003 g          578 t
ORIGIN      
        1 taactccgct cgccgattcg gatgcgatcg agcgctacgg acacatcccg cttccgccgt
       61 acatcacccg cgcagacact ccgccagacg ctgagcgcta ccagacagtt tatgcggccg
      121 aaaccggatc cgccgcggct ccaaccgcag gcctgcactt cacgccggag atactcgacg
      181 agttgcggac acacggcgtc gagatcgccg acgtgattct tcacgtcggc gccggaacgt
      241 tcaagccggt cgaggtcgaa gatcccgcgc aacacgtgat gcacgaggaa tggtacgaag
      301 ttcccgcggt cacggcgcaa cgcattgcac aagcgcgtgc gcgcggcgcg aagacgtggg
      361 ccgttggcac gacctctgtc cgcactctgg agagcgcgtc cgatgagaac ggcgtcatcg
      421 caaccggaag caacgagacc agcatcttca tcagaccgcc ctacacgttc cgtgcggtcg
      481 atcacctgct gactaacttc catctgcccc attcgacgct gatcatgctg gtagccgcat
      541 tcgccggcta cgacctgacc atgcgcgcgt acgcgacagc cgttgaggag cgctaccgct
      601 tcttctcgta cggcgacgca atgctcatca tctgatcgca atgccgttca gcttcaacgt
      661 tctgcaatca cagggtgccg cacgtgcggg agtgttcaca acaccgcacg gtgacgtcgc
      721 aacgccggcc ttcatgcccg tcggcacgct cgcgactgtg aaggcgctcg atccggatga
      781 cctgcaccgg gccggcgcgt cgatggtgct gtccaatgcg taccatctgc acctgcggcc
      841 cggcgacgag ctgattcgcg acatgggcgg cctgcacagg ttcatgggat ggaacggccc
      901 catgctcacc gactcgggcg gattccaggt attctcgctc gaaacgctca gaaccatcaa
      961 cgaagaggga gtcgaatttc gcagccacat caacggcgac gcgaaattct tcacgcctga
     1021 aactgtcatc gggatcgagc gcaacatcgg cgcggatgtg atgatgcaat tcgatcacgt
     1081 aatacccgga cagtccagcg aacccgtcgc gcgcgacgcg atggagcgca gtgtgcgctg
     1141 gcttgcgcgc tgcctcgccg cattcgatgc cagcgccgcg accgctccct tcgagcagac
     1201 cctgtttccc atcgtgcagg gcggaatcca tgcacacctc cgccgcgaat ccgtcgaacg
     1261 aatcgcggaa atcgcgcact ggaccggatt cggagtcggc ggcctctcgg ttggcgaatc
     1321 caagccagac atgtacgcta tgctcgaggt caccgatgcg gcgatcccgc gtgaccggcc
     1381 gcgctatctc atgggcgttg gatttccgga ggacctcatc gagggcgtgc ggcgcggcgt
     1441 cgacctgttc gattgcgttg ccccgacacg catgggccgc acgggcgccg ttttcaccca
     1501 cgacggccgg ctcaacgtga agcgcgccga gctgcgtgcg gaccccggac cgctggaccg
     1561 ggactgcgat tgcccgacct gtacccggtt cagtcgcgca tatctgcggc acctgtttgt
     1621 gagcggagag attctcggcc tccgcctcct gtcccttcac aatgtacatt tcctgattcg
     1681 actcatgcgt accgcccggg aacacatcgc aggcggaacg ttcgatcagt ggagcgccga
     1741 ctggctcgcg cgctacttcg cgacccctca aatcacccga tgaacaatcc gctagtaggc
     1801 accatcctga tgtatggcgc gatcggcgcc atcttctatt ttgtacttct tcgtccgcag
     1861 cagaagcaga aaaaagagca tgacaccatg ctccggagcc tccgccgcgg cgatgagata
     1921 gttaccgctg gcggcgtggt gggcgaggtg acctacatcg cgcagcagac caaggacggc
     1981 aacccggtga tctccctgga cgaccgcgtc accatcaagt ccggcgatac ccgcctgatc
     2041 gtggaacgcg ggcgcatagc caagatcatg cgcaagaatt ccgcgggcgc cgaggagtaa
     2101 cgagctgtgg ctgtactcga cattcgcgta cttggagacc cgatcctgcg cgagcgtacc
     2161 gatccccttg ctgctgtcac ggctgaactc cgcgcgctcg ttgccgacat gttcgacacg
     2221 atgcatgcgg cggagggaat cggcctggcc gcgccgcagg tcggccgcaa ggagcgcgtc
     2281 ttcgtgatgg acgtcgatga cgatccgatg acgatggtga atccggagat cgtggtacgc
     2341 gaaggcctgg agcgtgcgga ggagggctgc ctctcgatcc cggagatctt cggcgacgtt
     2401 gaccgcgcga cgcggatcgt cgtgcgcgca ctggatgccg acggcaagcc gttcgaggtc
     2461 gagctgacgg gcctcgccgc ccggtgcgtg caacacgagc tggatcacct cgacggcaag
     2521 ctgttcatcg actacatgag cctcatcaag cggaagttca cggcccgcaa atgggaaaag
     2581 gaagcagcca actacccggg attcattcgc aagctcgagc ccggcaaggc aacttcacgc
     2641 aagtcgcgat cgcgcaataa aacgacggac cctgccgcgc cgccgttcga gccggagctc
     2701 tgactttcgc atgcgcgtaa tgttctgggg cacaccggaa ttcgccgcgc cagccctgcg
     2761 tgcgctcgtt ggcgagggat tcgatgtctg cgcagtcgtc acgcggccgg acaggccggc
     2821 aggacgcgat cgtgtgctca cgcaaccggc gatcaagcag atcgcgctca aggaatcact
     2881 ccctgtcttt caacccgagt cgccgcggga agaggaattt caggatctca tccgggctgt
     2941 cgcaccggat ctatccgtgg tcgtcgccta tggccatatc ctgccccgca tcgtcatcga
     3001 cgcgcccgcg ctcgggacgc tcaacattca cgcatcgctg ctgccggccc tccggggcgc
     3061 ttctccgatc cagagcgcca tacgccaggg cctgactgaa acgggcgtca cgatcatgcg
     3121 gatggtgccc gcactcgacg cggggccgat cattctccag tcccgtaccc cggtcgccga
     3181 cgacgagacc tacggcgagc tccagggccg gctttcggag ctcggggcgc tggcgctgat
     3241 cgaagcgctg acgctgatcg agctcggcca cacgactgaa aagccacagg atgattctct
     3301 ggcgaca
//
LOCUS       DATIMD010000283         7763 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4438451, whole genome shotgun sequence.
ACCESSION   DATIMD010000283 DATIMD010000000
VERSION     DATIMD010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7763
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4438451"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..773)
                     /locus_tag="VLI40_06540"
     CDS             complement(<1..773)
                     /locus_tag="VLI40_06540"
                     /inference="COORDINATES: protein motif:HMM:NF028500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96870.1"
                     /translation="MSARLRLDTPINFLKGVGPARAESLRKLGIINAGDLLWHVPRRY
                     EDASTVRHISSLEPGMDATVIGRVISKGVIPTRKGLRIFQAVVRDDSGIIEVSWPGQP
                     FLDRVIHKDDTLLLSGPVRFFHGRQLAPREYVNLGPDENPTSGGRVLSVYPATEGISF
                     KVLRSLIDAHLDALLPLVEDELSRQLLDRAHVVGLADAFRMVHRPTSIAEAQRGRERL
                     AFDELFFVQLLQRRANRLAREERGGIRFENRRHLTSALR"
     gene            complement(800..1732)
                     /gene="ftsY"
                     /locus_tag="VLI40_06545"
     CDS             complement(800..1732)
                     /gene="ftsY"
                     /locus_tag="VLI40_06545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HSU96871.1"
                     /translation="MAFLSRKEGDVPRRSLWQRIKDVALTDVAVIARGGVDKGSLEQV
                     EEILLQSDFGVPVTLRLVDDISRQAQRGLIRTGDEFKKALSSGIEDALRAGNADPALR
                     TAESKPLVMLIVGVNGAGKTTFIGKISSALRAQGKSVLVGAADTFRAGAIDQLRVWAE
                     RTGAEFVGGPERSDPASVAYNAVEAGITRGVDVVIVDTAGRLHTSDSLMEELRKVNRV
                     IAKRLPGAPHETLLVLDGTIGQNAVSQAKTFAASVPLSGLVITKLDGTAKGGVVVAVH
                     EAIDVPVKFVGVGEKASDLVAFDAARFSREVVGD"
     gene            complement(2227..3270)
                     /locus_tag="VLI40_06550"
     CDS             complement(2227..3270)
                     /locus_tag="VLI40_06550"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HSU96872.1"
                     /translation="MAILFTPPVASPAPVTDPAALAATNRAIAATAVTTLDPVIVSTP
                     ATSVPELRFNPVVVEASLLHGVDTVVLNGTIHSSLSASLAHVGQGELPAAQRRSIAWN
                     LADIFEHRVDMSRDLDDGDTFHVLVERLQKPNGKVIVNKILGAKLSLGDEIIEAIHFK
                     SNSSSSEWFDGHGKSLTSTFLRTPVNFRRISSVFGLREHPIFGTWRNHTGTDYAAAMG
                     TPVHAIGDGVIVTEGRVGGYGNMIDIRHSNGMISRYGHMSRFARGVHSGSHVKMGETI
                     GYVGMTGWATGPHLHFEIRVHGVARDPKLALKGQSGATLSSSETALFNEIRAHTLAVM
                     AHSTEPPKQVAMR"
     gene            complement(3324..4556)
                     /gene="ftsZ"
                     /locus_tag="VLI40_06555"
     CDS             complement(3324..4556)
                     /gene="ftsZ"
                     /locus_tag="VLI40_06555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HSU96873.1"
                     /translation="MIFEFEENTSQNARMKVVGVGGGGGNAVNRMIEERLEGVEFVSV
                     NTDAQALLNSKSDVKLQIGKKLTRGLGAGARPEVGRQAIEENRDEVLRAMTHADLVFV
                     TCGMGGGTGTGAAPVVCELARQAGALTVGIVTKPFLFEGRKRMRQAELGIAEMRKNVD
                     TMIVVPNERLLAVVGKGIPFQEALKKADEVLLHATQGISSLISVTGLVNVDFADVRTV
                     MQNGGSALMGTGIGRGENRAVEAAQQAIASPLLDNVSISGATGVLVNITGGEDLTLGE
                     VHQINEIVHEAVGEEAEIIFGAVHEPAMHGEIRVTVIATGFDRGIASTAPQPVFGSTV
                     QHPVRGAPVIPLHSTRTVRPNQPPLSTGGPTRPTPLAIPEIPRRVTPFNPGSSSNDGR
                     DQELSDMEIPTFIRRQMD"
     gene            complement(4820..6073)
                     /gene="ftsA"
                     /locus_tag="VLI40_06560"
     CDS             complement(4820..6073)
                     /gene="ftsA"
                     /locus_tag="VLI40_06560"
                     /inference="COORDINATES: protein motif:HMM:TIGR01174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HSU96874.1"
                     /translation="MNVERVVAGLDIGSAKTTAIIAEAVGDRHPTIRILGVGQARTTG
                     LRRGIVSDIEETTRSIQKAMQDAERMAGTRIEAIFAGIAGEHVHAMSSRGIVAVNGEE
                     ISRADVDRANDVARAQAIPQDRELLHAIPQEYTVDKNAGVRDPIGMIGTRLETEMYLV
                     TIGSSPAMNLRKSVERAGYRVRDLVLEPLASALAVLTEDEKELGVALVELGAGTTDIA
                     IFHEGKIRHLATLGFGGNIVTNDIVHGLGVTQSDAERLKERYGSAYEPMVDPADVIQL
                     PSTVAQGDRQIPRELLAHIIHQRLDEIFDMVHREIHGAGYGSRLAGGIVLTGGGAAME
                     GITELAASVFGTGVRVGVPGEHVGGLSDSVEAPRFATAVGLALYGANRLVADGGGPSA
                     KRNSFNTPGVDKLAKRMKNWLEDFF"
     gene            complement(6070..6771)
                     /locus_tag="VLI40_06565"
     CDS             complement(6070..6771)
                     /locus_tag="VLI40_06565"
                     /inference="COORDINATES: protein motif:HMM:NF020067.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HSU96875.1"
                     /translation="MKFPERLKKPGYRYLAGIIVAAVVLTAPRWGRAAMHRMTYFHVR
                     KLDIRGVRYLQPSDIVARLRVDTLRSIVDDITPLEARLKSHPQVADVHITRRFPGTLI
                     VTVTENMPVALVPRGDGLQPYDSAGRALPIDPSSTNLDLPVVTAPDRGALRLMGELRA
                     VDPRMFALISEVAPVGQDLVFTLNSSLRVRASAGVAPERFRDIFPVESDLARRNERAA
                     ELDIRYRDQVVARLE"
     gene            complement(6768..>7763)
                     /locus_tag="VLI40_06570"
     CDS             complement(6768..>7763)
                     /locus_tag="VLI40_06570"
                     /inference="COORDINATES: protein motif:HMM:NF019850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HSU96876.1"
                     /translation="SAGLDPTGIAGGRVAEWDGNMSFGSDQLFVVEADEYDRSFLALD
                     PAIAVVTNVEADHLDIYTDLADIRSTFGRYVSGARAIVLCADDTGASSLELPATAEVI
                     RYGLNSPDARLVARDVRPNDTGSSFVVHYDGEEKCEVTLRVPGVHNVRNALAAIGAGI
                     ALGVEPARLVPGLGEFTGVERRFQRIADVDGVMIIDDYAHHPTEIAATIEAARASFPG
                     RRLVLAFQPHLYSRTRDFAGEFGQALSGADAIFLTELYPAREQPIPGVSSDLIERAIA
                     SAGGSLTWRGERPALAEALSTRVLPGDVVITVGAGDITRTARELRDILLSTTKNT"
BASE COUNT         1513 a         2503 c         2260 g         1487 t
ORIGIN      
        1 tcgcgcagtg ccgatgtgag atggcggcgg ttctcgaacc ggatgccgcc tcgctcctcg
       61 cgcgccagcc gattcgcacg acgttgcagc agttgaacaa agaacagctc atcgaacgcc
      121 aggcgttctc gtccgcgttg agcctccgcg atcgatgtgg ggcgatgcac cattcgaaac
      181 gcgtcagcga gtccgacaac gtgcgctcga tcaagcaatt gccgtgacag ctcgtcctcg
      241 acaagcggca acagcgcatc cagatgcgcg tcgatgagcg agcgcagaac cttgaacgag
      301 attccttccg tcgccggata caccgacaac acgcgtccgc cgctcgtcgg attttcgtcg
      361 ggcccgagat tgacgtattc gcgcggcgca agctgacgtc catgaaaaaa acggacgggc
      421 ccgctcagca gcagcgtgtc atccttgtga atgacacggt cgagaaatgg ctggccaggc
      481 cacgacactt ctatgattcc actgtcatcg cgtacgacag cctggaagat gcgcaagccc
      541 ttgcgggtgg ggatcacacc cttggagatc acccgcccta tgacagttgc atccatcccc
      601 ggctcgagcg aagagatatg ccgtaccgtg ctcgcatcct cgtagcgacg cggcacgtgc
      661 cagagcaggt cacccgcgtt gatgatgcca agcttgcgca gcgactctgc acgcgcggga
      721 ccgacacctt tgaggaaatt gatcggcgtg tcgagccgca ggcgtgcgga catcactgat
      781 gacgcgccgc tccgcgccat cagtcgccta ccacctcacg ggaaaaacgc gccgcgtcga
      841 acgcaaccag atcgctcgcc ttctcaccga cgccgacgaa cttcaccggt acatcgatcg
      901 cctcatgcac agccacaacg acaccgcctt tagcggtgcc atcgagtttg gtgatcacca
      961 gaccgctcag cggaaccgac gcagcgaatg tcttcgcctg actcaccgca ttctgtccga
     1021 tagtcccatc cagaacgagc agcgtctcgt gcggcgcgcc cggaagtcgc tttgcgatca
     1081 cgcgattcac cttgcgcagt tcctccatca gactgtcgct cgtgtgcagc cgtccggcgg
     1141 tatccacgat cacgacatcg acgccgcgcg tgatgccggc ttccacggcg ttgtatgcaa
     1201 ccgacgctgg atccgagcgc tccgggccac cgacgaactc cgctccggtt ctctctgccc
     1261 acacacgcag ctgatcgatt gcaccggcgc ggaaggtgtc ggccgctccc acgagcacag
     1321 acttgccctg cgcgcgcaac gcgctggaaa tcttcccgat gaacgtcgtc tttcccgcgc
     1381 cgttcacacc gacgatcagc atcaccagcg gcttgctctc ggcggtgcga agtgcaggat
     1441 cggcgttgcc ggcgcgtagc gcatcctcga tcccgctact cagcgccttc ttgaattcgt
     1501 cacctgtcct gatcaggcca cgctgcgcct gtcgcgagat atcgtcgacg agacgcagcg
     1561 ttaccgggac gccgaaatcc gactgaagca ggatctcctc gacctgctcc agcgaaccct
     1621 tgtcgacgcc gccgcgcgca atgacagcta cgtcggtgag ggcaacgtcc ttgatccgct
     1681 gccatagcga ccgcctgggg acgtcgcctt ccttacgaga caaaaaagcc atttcagggg
     1741 aaatccaggc gcgacctgcg cccggttgga taggtcaaaa tcgtacagtc accgagctat
     1801 ggtgccgtat catgagcgat tctgactgta atttaccctg aacgcacggt cgagagatca
     1861 agcgaattgc cgctggcatg gtctttccag cgacgatttc ttcctccagg aaggcccgaa
     1921 tgtacataat cattgcagtc atagtattcg tcgcgatcgc tcttctcgtc atggccgatc
     1981 tgcggaaacg gcgacatcgg aagcgcagat atccagtcca gccggacggc gtgcgcacct
     2041 gcgtatcgtg tggaaaggta ctgcgtacgg gtgcaaccga ttgcagccac tgcggcgcgg
     2101 attctgtcgt gattgtcgtc tgaattctac cgtgtatcat ctgacggaaa acaaaaagat
     2161 cccgttggag catgtgctcc aacgggattt tgcattcaca atcttcgatc gctaatcagc
     2221 cgcgaatcag cgcatcgcga cttgcttggg cggttcagtc gaatgtgcca ttaccgcgag
     2281 cgtatgcgcg cgaatctcgt tgaacagcgc ggtctccgag ctgctgagcg tagcgccgct
     2341 ctgacccttg agcgcaagct tgggatcgcg cgcgacgccg tgcacgcgaa tctcgaagtg
     2401 aaggtgtgga cctgtcgccc agccggtcat tccgacatag ccgatcgtct ctcccatctt
     2461 cacatgactg ccagagtgaa ccccgcgtgc gaatctgctc atgtgtccgt agcgactgat
     2521 catcccgttg ctgtgacgga tgtcgatcat gttgccgtaa ccgccgacac gcccttccgt
     2581 tacgatgaca ccgtcgccaa tcgcgtgtac tggcgttccc attgcggcgg cgtaatcagt
     2641 gccggtgtga ttgcgccacg taccgaagat gggatgctcg cgcaacccga acacggacga
     2701 tatgcgacga aaattcaccg gcgtgcgaag gaacgtcgac gtcaacgact tgccgtgtcc
     2761 gtcgaaccac tcgctgctgg agctgttgct cttgaaatga atcgcttcga ttatctcatc
     2821 gccgagtgag agcttggcgc cgagaatctt gttgacaatt accttgccgt tgggcttctg
     2881 caagcgctcg acaagaacgt gaaaggtgtc gccgtcgtcg agatcgcgcg acatgtccac
     2941 gcggtgctcg aagatgtcgg cgagattcca tgcgatcgag cggcgctgtg ctgcagggag
     3001 ctcgccctgc cccacgtggg ccagcgatgc agagagcgat gaatggattg ttccattcaa
     3061 cacgaccgta tcgacgccat gcagaagcga cgcttcgacg acaacaggat tgaagcgaag
     3121 ctcggggacg gatgtcgccg gcgtggagac aattacagga tcgagggtgg tcaccgcggt
     3181 cgcggcaatc gccctgttcg tcgcggctaa cgcggctggg tctgtgaccg gcgcaggtga
     3241 ggctacaggc ggcgtgaaga gaattgccac ccatgccatt aacccgatta taccatatgt
     3301 gccggcgcgt gctgctactg ccttcaatcc atctgcctcc gaataaaggt cgggatctcc
     3361 atatcgctta gttcctgatc ccgaccgtca ttcgaagacg accccgggtt gaacggcgtc
     3421 acgcgtctcg gaatttctgg aattgcaagg ggggtcggac gagttggacc gccggtggac
     3481 agtggcggct gattgggccg aactgtccgt gtagaatgaa gcggaatcac cggggcacca
     3541 cggactggat gctgaacggt gctgccgaat actggctgag gggcagtact ggcgattccg
     3601 cgatcaaaac cggtcgcaat gaccgtaacg cgaatctcac catgcatcgc tggctcatga
     3661 accgcaccga agatgatctc ggcttcctcg cccacagcct cgtgaacgat ctcgttgatc
     3721 tgatgaactt caccgagcgt gagatcctcg ccaccagtga tgttgacgag tacgccggtc
     3781 gcgcctgaga tcgagacatt gtcgagcaac gggctggcga ttgcctgctg tgcagcttcg
     3841 accgcgcgat tttctccgcg accgattccg gtgcccatca gcgccgaacc accgttctgc
     3901 atgaccgttc gaacgtcggc aaagtcgacg ttcacaagtc cggtaacgga gatcagcgaa
     3961 gagatgccct gcgtcgcgtg aagcagaact tcgtcggcct tcttgagcgc ttcctgaaac
     4021 ggaataccct tgccgaccac tgcaagcaga cgctcgttcg gaacgacgat catcgtatcg
     4081 acgttcttgc gcatctcggc gatgccaagc tcggcctgcc gcatccgttt gcggccctcg
     4141 aacaggaacg gcttggtgac gatgccaacg gtgagcgcgc cagcctggcg tgcgagctcg
     4201 cagacaaccg gtgctgcgcc tgtgcccgtg ccgccgccca tgccgcacgt cacaaagacg
     4261 agatcggcat gggtcatagc acgcaacacc tcgtcgcgat tttcttcgat tgcctggcga
     4321 ccaacttccg ggcgcgcgcc cgctccgagt ccgcgcgtga gcttcttgcc aatctgaagc
     4381 ttcacgtccg atttcgagtt gagaagagcc tgggcatccg tattgaccga gacgaactcg
     4441 acgccttcaa ggcgctcctc gatcattctg ttgacagcgt tgccaccgcc accgccgacg
     4501 ccgacaactt tcatccgcgc gttctgcgat gtgttctcct caaactcaaa tatcatcgcg
     4561 gcatgcactc ctaggcgggt gggatcgtat ggacgggcta atatacgtga aagacacgct
     4621 gccgaccatg cccaattgac gatcgaacgc ccaacatttc acacataaaa tgtttggcgg
     4681 tttttccaca cgaatttatt ttttgacagc tttgcgacat cgccgaccgt ggagcgccat
     4741 ctctcatcgt caatcgcccg agcgacgctg gtcggatgca agcgtgatgc acgacgctct
     4801 cagacgctcg tagacgctcc tagaagaaat cttccagcca gttcttcatc cgcttggcaa
     4861 gcttgtcaac gccgggcgtg ttgaacgagt ttcgcttcgc gctcggaccg ccgccgtctg
     4921 ccacgagccg attggcgcca tacaacgcaa gcccgaccgc ggtcgcgaat cgcggcgctt
     4981 ccactgaatc actcagcccg ccaacgtgct cgcccggaac gccaactcgc acgcccgtgc
     5041 caaagacgct cgcggcaagc tctgtgattc cctccatggc cgcgcctcca ccggtcagca
     5101 cgattccacc ggcgagccgc gaaccgtagc ctgccccgtg aatctcgcgg tgaaccatgt
     5161 cgaagatctc atccaggcgc tgatggatga tgtgcgccag cagctcgcgc gggatctgcc
     5221 tgtctccctg cgccaccgtg ctcggaagct gaatgacgtc ggcgggatcg accatcggct
     5281 cgtacgcgct gccataacgc tccttcaggc gctcggcgtc cgactgcgtt acgcccagcc
     5341 cgtggacgat gtcgttcgtc acgatgttgc cgccgaagcc aagcgtcgcg agatggcgga
     5401 tcttcccttc gtgaaatatc gcgatgtcgg ttgttccggc gccgagctcg accagcgcga
     5461 cgccgagctc cttctcgtct tccgtgagaa cggccagcgc gcttgcgagt ggctccagaa
     5521 ccagatcacg aacccgatag ccagcgcgct ccacgctctt gcgcagattc atcgccggcg
     5581 agctgccgat cgtcacgagg tacatctcgg tctcgagacg cgtgccgatc atcccgatcg
     5641 ggtcgcgcac gccggcgttc ttgtcgacgg tgtattcctg cggaatcgcg tgcagcagct
     5701 ccctgtcctg cgggatcgcc tgcgcgcgcg cgacgtcgtt ggcacgatcc acgtcggcgc
     5761 gtgatatctc ctcgccattg acagcgacga ttcccctgct gctcatcgcg tgcacgtgct
     5821 cgcccgcgat accggcgaat atcgcctcga tcctcgtccc cgccatacgc tctgcgtcct
     5881 gcatcgcctt ctgaatcgag cgggtcgtct cctcgatgtc agacacgatt ccgcggcgaa
     5941 gtccggttgt gcgagcctga ccgacgccga gtatccggat cgtcggatga cggtcgccaa
     6001 ccgcttccgc gattatggct gtggtcttcg cagagccaat atccagtccg gcaactacgc
     6061 gttcaacgtt cattcaagcc ttgcgacaac ctgatcgcga taacggatgt ccaactctgc
     6121 tgcccgctcg ttgcggcggg ccaggtcgga ttcaacggga aagatatccc ggaagcgttc
     6181 cggggccacc cccgcggacg ctcgcacacg caatgatgag tttagcgtaa agaccagatc
     6241 ctgcccaacc ggcgcaactt cgctgatcag tgcgaacatc cggggatcga cggcacgcag
     6301 ctcccccatc agccggagcg cgccgcgatc cggcgcggtc accacgggaa gatccagatt
     6361 ggtgctgctc ggatctatcg gaagcgcgcg tcccgccgag tcgtacggct gaaggccgtc
     6421 tccgcgtggc acaagcgcga caggcatgtt ctcagtgacc gtgacgatca acgtgccggg
     6481 aaaacggcgt gtgatatgga cgtcggcgac ttgcggatga gacttgagac gagcttcgag
     6541 aggcgtgatg tcgtccacga tggaccggag cgtgtccacg cgcagtcgcg cgactatgtc
     6601 actcggctga aggtagcgca cgccgcgaat gtcgagcttc ctgacgtgga agtacgtcat
     6661 gcgatgcatc gccgctcgcc cccagcgtgg cgccgtcaga acaacggccg caacgatgat
     6721 cccggcgagg tagcgatagc cgggtttctt gagtcgctcg gggaacttca agtgtttttg
     6781 gttgtcgaca gcagaatgtc gcgcagctcg cgagccgtcc gcgtaatgtc acccgcgccg
     6841 acggttatca caacatcgcc cggaagcacg cgagtcgaaa gggcctccgc gagcgcgggc
     6901 cgctcgccgc gccaggtcag gctcccgcct gccgacgcaa tggcgcgctc gatcagatcg
     6961 gagctcacac cgggaatcgg ctgctcgcgc gccggataca gctcggtgag aaagatcgcg
     7021 tcggcgccag agagcgcctg cccgaattcg cctgcgaaat ctcgcgtccg gctgtagagg
     7081 tgcggctgga atgccagcac caggcggcgc cccggaaagc tggcccgagc cgcttcgatc
     7141 gtcgccgcga tctcggtcgg gtgatgggca taatcatcga tgatcatcac tccgtcgaca
     7201 tccgcgattc gctgaaatct ccgctcgacg ccggtgaact cacctagtcc cgggactaat
     7261 cgggccggct cgacaccgag cgcgattccc gctcctatcg cggccagcgc gtttctcaca
     7321 ttgtggacgc cgggcacgcg cagcgtcacc tcgcacttct cctcaccatc gtagtggaca
     7381 acgaagctgg aaccggtatc gttcggccga acgtcgcgcg ccacaagacg cgcatcgggc
     7441 gagttcaggc cgtaccgaat cacctcggcg gtagccggaa gctccagcga gctcgcgccc
     7501 gtgtcgtcgg cgcagagcac gatcgcgcga gctccgctca cgtatcgacc gaacgtcgac
     7561 cggatgtcgg cgagatccgt atagatgtcc agatggtcag cctcgacgtt cgtgaccacg
     7621 gcgatcgccg gatcgagtgc gaggaacgaa cggtcatact cgtcggcctc gaccacaaac
     7681 agctgatccg aaccgaacga catgttgccg tcccactccg cgacgcggcc accggcgatt
     7741 cccgtgggat cgaggccggc cga
//
LOCUS       DATIMD010000284         2025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1266177, whole genome shotgun sequence.
ACCESSION   DATIMD010000284 DATIMD010000000
VERSION     DATIMD010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1266177"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1429
                     /locus_tag="VLI40_06575"
     CDS             <1..1429
                     /locus_tag="VLI40_06575"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSU96877.1"
                     /translation="ARERTVMQAFVKLGPDDPWTGPLPPPTIIPAIPDTGEACARSPL
                     WKIYRFRMDMPSRALTVVGGTPTPAAMRLIRDSIPKLAVTPEIAAWHFGYLFVDSPGF
                     PEAIAFTPVRDAAGHVRAVYGYRSCYATYDVWDYALVHRIARIVPPFLTEGMPTDSIV
                     SVVVADSHGRTLYAAPARSVPVRAIGTDTVPQISGIVITIGLRPKVAQRLVLGGVSGS
                     RLPGSFLLLIGSIVFAIATLAMMRREFKLVESREAFLGNISHELRTPLQHILLFVQIL
                     RLKRARNQDEHDKAVAVIETETQRLIRLTDNVLAAVRTTRPRLAAGPIDVGEVVASSA
                     QLCEQLAEARSMRIETDAVPAIAAGDAGALKQVLVNLIDNAVKYGPNGQTIRIGVRTE
                     AQDIQIWVEDSGPGIPLKDRERVWEAFTRLDSPGDATAGTGIGLTIARELILQMHGRV
                     EIQQSAGTGARISVFLPRWTAEQSE"
     gene            1426..>2025
                     /locus_tag="VLI40_06580"
     CDS             1426..>2025
                     /locus_tag="VLI40_06580"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSU96878.1"
                     /translation="MTEPRTDNHRAHTVLIVEDSETLALGLRTSFEFEGYDVHWAADG
                     EMALEWLAEHSPDLVILDLMLPKINGFDVLRRFRASGGSSAVLILSARDGEVDKVQGF
                     RSGADDYVVKPVGVLELLARAEAMLRRIEPRRSSVANDVAATNTIQFGDVTIDLKTRT
                     VTRAGVAVELTPREYELLVFLVRADGAIISREHVMDEVWH"
BASE COUNT          393 a          617 c          633 g          382 t
ORIGIN      
        1 ggcgcgcgag cgcactgtga tgcaggcatt tgtgaaactg ggacctgatg acccatggac
       61 cggaccgcta ccaccaccga cgataattcc cgcgatcccg gacaccggcg aggcgtgcgc
      121 gcggtcgccg ctgtggaaga tctaccgctt cagaatggac atgccctcgc gcgcgctgac
      181 ggtcgtgggc gggacgccga ctccggctgc gatgcgactc attcgtgact cgattccgaa
      241 gctcgccgtc acgccggaga tagccgcgtg gcacttcggc tatctatttg tcgactcgcc
      301 cggctttcct gaagcaattg cgttcactcc ggttcgtgac gcggcggggc acgtacgagc
      361 cgtgtacggc taccgatcat gttacgcaac gtacgatgtg tgggattatg cactggttca
      421 tcgcatagca cggatagtcc ctccatttct tacggaaggc atgcccaccg actcgattgt
      481 gagcgtcgtc gtcgccgaca gtcacggacg cacactctac gcggcgcccg cacgcagcgt
      541 ccccgtacgc gcgatcggaa ccgacacggt gccgcagatc agtggcatcg tgatcacgat
      601 cggcctccgg ccaaaggtcg cgcagagact ggtactgggc ggcgtctcag gatcgcggct
      661 cccgggctcg ttcctgttgc tcatcggaag catcgtgttt gccatcgcaa cgctcgcgat
      721 gatgcggaga gagttcaaac tggtcgagtc gcgagaagcg tttcttggta acatttcgca
      781 cgagcttcgc acaccgctgc aacacatcct gctgttcgtg cagattctcc ggttgaagcg
      841 cgcccggaat caggacgagc atgacaaggc ggttgcggtg atcgagaccg agacgcaacg
      901 gctcattcgc ctcaccgata acgtacttgc cgccgtgcgc accacccgtc cacgactcgc
      961 ggctggcccg atcgatgtcg gtgaagtagt cgcgagctca gcgcagctct gtgagcagct
     1021 ggcggaagcc cgttccatga ggatcgaaac agacgcggtt cccgctatcg cggctggcga
     1081 cgctggcgca ctgaaacagg tacttgtgaa tctcatcgac aacgccgtga agtatggccc
     1141 gaacggtcag accattcgca tcggcgttcg caccgaagca caggacatac agatctgggt
     1201 ggaggattcc ggtcctggga ttccactcaa ggatcgcgag cgcgtatggg aagcgttcac
     1261 ccgactcgat tcaccgggtg acgcgacggc tggtacagga attggcctga cgatcgcgcg
     1321 cgagctgatc ctgcagatgc acgggcgcgt cgagatccag cagagcgccg gtaccggcgc
     1381 acggatctcc gtgtttcttc cccgctggac cgcggagcaa tcagaatgac agagcctcga
     1441 accgacaacc atcgcgcaca caccgtcctc attgtcgagg acagcgaaac actcgcactc
     1501 ggtctacgca ccagcttcga gttcgaggga tatgacgttc actgggcggc cgacggagag
     1561 atggcgctcg agtggctcgc cgagcactcg cccgatctcg tgattctgga cctcatgctg
     1621 ccaaagatca atgggttcga cgtgctgcgc cgctttcgcg cgagcggcgg atcgtcggcg
     1681 gtgctgatcc tgtccgcgcg cgacggcgag gtggacaagg ttcagggttt ccgtagcggt
     1741 gcggacgatt acgtcgtcaa gcccgtcggc gtactcgagt tgttggcgcg agcggaggcg
     1801 atgcttcgac gtatcgagcc gcgcagatct tccgttgcga acgatgttgc agccacaaac
     1861 acgattcagt tcggtgacgt gactatcgac ctcaagacca ggactgtgac gcgtgccgga
     1921 gttgcagtgg agctgacacc gcgcgaatac gagctactgg tattcctggt gcgcgccgac
     1981 ggcgcaatca tatcacgcga gcacgtgatg gacgaagtct ggcac
//
LOCUS       DATIMD010000285         1914 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4732685, whole genome shotgun sequence.
ACCESSION   DATIMD010000285 DATIMD010000000
VERSION     DATIMD010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4732685"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1623
                     /locus_tag="VLI40_06585"
     CDS             <1..1623
                     /locus_tag="VLI40_06585"
                     /EC_number="3.2.1.22"
                     /inference="COORDINATES: protein motif:HMM:NF014156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HSU96879.1"
                     /translation="TTREIPGPRPRSGFLDLLRLPDRVIVQTAASNQTLNHGAGDRWT
                     SDTGIVVTTSVRANTLHVALSAPSVAIKRIYLRWRGDMADARLIMGDAWERAYGDLEW
                     RTWIPDRVMPWYFATYDGSRTNAYGVHTGARAFCFWQIDKHGISLCADVRSGAAAVEL
                     GERVLDVCDVACRAGHSGESAFAAIHAFCRQTCPDPRLPSRPVYGSNDWYWAYGKNSA
                     DSVRLDAQHIVELSPKSENRPFVVIDDGWQPGRGKDETGAGEWDRGNEKFPDMARLTS
                     DIRHIGARSGVWIRPLQPTADAPDSWRLARTRTVLDPTVPEVRQKITADIARLREWGF
                     ELIKHDYTTFDIFGRWGFQMGTDLTRGEWTFASGTGRTTAEVVNDLYGTIRAAAGESV
                     VIGCNTVSHLSAGQFELCRIGDDTSGTDWSRTRKMGVNSLAFRGIQHDAFYAADADCV
                     GVTNDIPWTFNRQWLDLLARSGTTLFVSLAPDALGAQQRADLRNALALAATRQSLAEP
                     LDWQRTVYPQDWSFRSAERSYDWVSADGVGLP"
     gene            complement(1713..>1914)
                     /locus_tag="VLI40_06590"
     CDS             complement(1713..>1914)
                     /locus_tag="VLI40_06590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96880.1"
                     /translation="LISTVLGGPMLTLVVPTLLIAALGLAAILGAMIIFDGESNYVEG
                     AALIGLYFIIAASVWFGPPIAG"
BASE COUNT          372 a          614 c          593 g          335 t
ORIGIN      
        1 acgacacgag agataccagg accgcgaccg cgcagcggct ttctcgacct gctgcgtttg
       61 ccggaccgtg tgatcgtcca gactgccgcg agcaatcaga cgctcaatca cggtgcgggc
      121 gaccgctgga caagcgacac tgggattgtg gtcacaacgt ctgtgcgcgc caacacactc
      181 cacgtagcgc tatcagcgcc atcggtcgct atcaaacgaa tttacctccg ctggcgcggc
      241 gacatggccg acgcgcgtct cataatgggt gacgcatggg aacgcgcgta cggtgatctc
      301 gaatggcgta cgtggatccc cgaccgcgtc atgccgtggt acttcgcgac ttacgatggc
      361 tcgcgcacca acgcgtacgg agttcacacc ggtgcccgcg cgttctgttt ctggcagatc
      421 gacaaacatg gcatcagtct gtgcgcggat gtgcgaagcg gtgctgcagc tgttgagctt
      481 ggcgagcgcg ttctcgatgt ctgcgacgtc gcgtgtcgtg ctggtcactc gggcgagtcc
      541 gcattcgccg cgatccacgc attctgtcgc cagacgtgcc ccgatccgcg acttccgtcg
      601 cgaccggttt atggtagcaa cgactggtac tgggcgtacg ggaagaatag cgctgattcg
      661 gttcgtctcg acgcgcagca catcgtggag ctctcaccga aaagcgagaa ccgtccattc
      721 gtcgtgatcg atgacggatg gcaaccgggc cgcggaaagg acgagaccgg cgccggcgag
      781 tgggatcgtg gcaacgagaa atttcccgac atggcgcgcc tcactagcga catccggcac
      841 atcggagcgc gctccggcgt gtggatccgt ccgctgcaac cgacggcgga cgcaccggac
      901 agctggcgcc tcgcgcgtac acgcaccgtc ctcgacccga ccgtgccgga agttcgccag
      961 aagatcactg cggacatcgc acgattgcgc gaatggggtt tcgagctgat caagcacgac
     1021 tacacgacct tcgacatctt cggccgctgg ggctttcaga tgggcaccga tctcacgcgc
     1081 ggcgaatgga cgttcgcatc cggtaccggc cggacgacgg cagaggtggt aaacgatctc
     1141 tacggaacca tccgcgcagc tgccggcgag agcgtcgtca taggctgcaa tacggtgagc
     1201 cacctctccg ccggacagtt cgagctgtgc aggataggtg acgacacgag cggcaccgac
     1261 tggtcacgca cgaggaagat gggcgtgaat tcgctcgcct ttcgcggcat ccaacatgat
     1321 gcgttctacg ccgccgacgc cgattgcgtc ggtgttacca atgacattcc gtggacgttc
     1381 aatcgtcagt ggctcgatct gctcgcccgg agcggcacca cgctgttcgt ctctctcgcg
     1441 ccagacgcat tgggcgccca gcagcgtgcg gacctgcgga atgcgctggc cctcgctgcg
     1501 acgcgccagt cgctagccga gccgctcgac tggcagcgta ccgtgtaccc gcaggactgg
     1561 agcttcagga gcgccgaacg cagttacgac tgggtaagtg ccgatggcgt gggcctgcca
     1621 tgatcacagg caatgatcac aggcatgatc acaggcaatg atcgcctgac ctgcagcgcc
     1681 ggcgtctccg ccgccctctc cgccggcatc tcctatcccg caatcggcgg cccgaaccac
     1741 acgctcgccg caattatgaa atacaacccg atcaacgcgg cgccttcgac ataattcgat
     1801 tcgccgtcga agatgatcat tgcacccagg atcgcggcca gaccgagcgc ggcgatgagc
     1861 agcgtcggga caaccagcgt gagcatcgga ccgccaagca cagtgctgat gagc
//
LOCUS       DATIMD010000286         2913 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4440175, whole genome shotgun sequence.
ACCESSION   DATIMD010000286 DATIMD010000000
VERSION     DATIMD010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2913
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4440175"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..326)
                     /locus_tag="VLI40_06595"
     CDS             complement(<1..326)
                     /locus_tag="VLI40_06595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96881.1"
                     /translation="MNTNQWRYLAPVIAGALAWACADTVAPIRQVAPHAAGTLAIGPL
                     TGAVWTSTSGCAAIDHNIYSTAQDVYVNGGPQGNVALNDGDYYVQVTTPGGALLGTSV
                     GRTGGE"
     gene            complement(845..1177)
                     /locus_tag="VLI40_06600"
     CDS             complement(845..1177)
                     /locus_tag="VLI40_06600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96882.1"
                     /translation="MRRQLLRVLCLALVFVAACQSWHATPLAPNVARDLPANTRLITS
                     NGQTVQLTSGRVTSDSVIGEQDTGQRIALPRDSVASVEVRGLSWPRTLGAVYGGLFVL
                     GLLIGEKF"
     gene            1204..2031
                     /locus_tag="VLI40_06605"
     CDS             1204..2031
                     /locus_tag="VLI40_06605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96883.1"
                     /translation="MNPGAVASDSNTTLPVCWYKSCDDWRACWRDGWRDAGIAAILTH
                     LAGANMMIDLSRPTARRGFLGRLAAIAALPLVGTGFTRASDKPQTSSPSPDDVWLRTL
                     NRKHRVAFDVEKHKDGHALIQGKDYLNDWSKSFGVPENEINLVMAVRGTGIPLVLNDA
                     LWQKFHLGEQYGITDPVTKTPGTRNLFTASNIVPGGLVDADASVEALQKRGVLFLVCH
                     NTVEGAVGKLSKAGFGSPAEIRAAILGGILPGVHVVPAMVIAFTEMEERGVGYIYAG"
     gene            2021..>2913
                     /locus_tag="VLI40_06610"
     CDS             2021..>2913
                     /locus_tag="VLI40_06610"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HSU96884.1"
                     /translation="MPDELHLATRSSDIDGVKKSSRRCGVVHLALLACAAIFIGCATV
                     SNGSHVVPSSTKAYPPWSRTPQGGRAFVVPDIDNVPDLYGDMTNPDLVLFLAGNQFMV
                     VPDLIDAFRAEHPQYQRIFVETLPPGILASQIEQGALVLSNLKIDLKPDVYAAGAPRI
                     TQMQQATHIFDTTVAYADNRLAIMVRRGNPAQVHTLRDLGNATVRVSMPNPAWEGIAR
                     QIEDMYRRAGGQALDDRIMKAKVADGTTVLTQIHHRQTPIRLMLDQADAGPTWYTEAY
                     FQRMIGNPIDLVAIPDSSNLRV"
BASE COUNT          576 a          905 c          866 g          566 t
ORIGIN      
        1 tcctcgccgc cagtccggcc cacgctggta ccgagcagag ctccgcccgg cgtcgtgacc
       61 tggacataat agtcgccatc attcaacgcg acgttgccct gcgggccgcc gttgacgtag
      121 acgtcctgcg cggtgctgta gatgttatgg tcgattgctg cgcaaccgga cgtggacgtc
      181 cagactgcgc cggtgagagg tccaatggca agcgtccccg cggcatgggg agccacttgg
      241 cggatcggtg caaccgtgtc tgcgcacgcc catgccagcg cgcccgcgat gactggcgcc
      301 agatagcgcc attgattcgt gttcatgtgc cgtgctcctg tagtggaatg ttgacggaac
      361 tgagagctca gtccctatca cgtacgaggt gcgactccac gagccacgcg ccgagcgcga
      421 ggccctacgg caacgtcctt cgcggccgca aacaatgcgg cgaggagatt cactcctggg
      481 tgttcgcgta tttctcgggt gtgttttcgg cctccgcagc gcacgttggg gttggtgaca
      541 atgcatgacg gcgcgggcct taatcgtgcc aattgtacgg catcgcacga ctacaacacg
      601 ggagctcgca ccggtgtgtc tataacgtgt gaccccaacg ctttgacaag tctgtcagga
      661 gcgtacaatc tgtcaaaatg accgattctg cctcgatttc gggcgttcaa ctgtggtacg
      721 cccgcaacac atgaggatta gtgcagcatc actctctctt attccgatcg gtcaacccga
      781 atcagagata cggaacgctc ccgctcgatg gtgatgtacg cgcgtgccgc aatcttcgcg
      841 caggctagaa cttttcgccg atgaggagtc ccagcacgaa gagcccacca tagaccgcgc
      901 cgagtgtgcg cggccagctc agacctctga cctctaccga cgccacgctg tcacgtggca
      961 gggcgattcg ctgtcccgtg tcctgctcgc caatcacgct gtcgctggtg actcgaccgc
     1021 ttgtcagctg aaccgtttga ccgttcgatg tgatcagcct tgtgttggcc gggaggtcgc
     1081 gcgcaacatt gggggcgagc ggcgtcgcat gccagctctg acatgctgca acgaacacca
     1141 gcgcaaggca cagcacgcgc agtagctgcc gtcgcattcg gatcctccga tgctgactgt
     1201 aagttgaacc ccggtgcagt cgcgagcgat tcaaatacta cgcttccggt gtgctggtac
     1261 aagagctgtg acgactggcg cgcctgttgg cgcgacggtt ggcgcgacgc cggcatcgcg
     1321 gctatactca cccatctcgc cggagcgaac atgatgatcg atctttccag acccacggct
     1381 cgccgtggct tccttgggcg gcttgctgcc atcgctgccc tccctctcgt cggtactggc
     1441 ttcacgcgag cgagcgacaa accgcaaacc tcctcgccgt cgccggacga cgtctggctc
     1501 aggacgctca atcgcaagca tcgggtcgca ttcgatgtcg aaaagcacaa ggatgggcac
     1561 gcgctcatcc agggcaagga ttatctgaac gactggagca agtcgttcgg tgtcccggaa
     1621 aacgagatca atctcgtgat ggccgtgcgc ggcaccggga ttccgctggt gctgaacgat
     1681 gcgctctggc agaagttcca tctgggtgag cagtacggca tcaccgatcc cgtgacgaag
     1741 acacccggaa cgcgcaatct cttcaccgca tccaacatcg ttcccggtgg cctggtcgac
     1801 gccgatgcgt cagtcgaggc actccagaaa cgcggcgtcc tgtttcttgt ctgtcacaac
     1861 accgttgaag gagcggtcgg caagctgtca aaagccggct tcggaagtcc cgccgaaatt
     1921 cgtgcggcga ttctgggcgg catccttccg ggtgtgcacg ttgttcccgc gatggtgatc
     1981 gcatttaccg agatggaaga gcgtggcgtc ggctacatct atgccggatg agctgcacct
     2041 cgctacgaga tcctctgaca tcgatggcgt gaagaaaagc agccggcgtt gcggcgtggt
     2101 gcatctggcg ttgctcgcgt gcgcggcgat tttcattggc tgcgcgactg tttccaacgg
     2161 ttcacacgta gtaccgagct ccacaaaagc gtatccgccg tggagtagaa ctccgcaggg
     2221 cggacgagcg ttcgtcgtac ctgacatcga caacgtgccg gacctgtacg gcgatatgac
     2281 aaacccggat ctggtactgt tcctcgccgg gaatcagttc atggtcgttc cggatctcat
     2341 cgacgcgttc cgtgcggagc atccgcaata ccagcgcatc ttcgtcgaga cgcttcctcc
     2401 cggaatactc gcgagccaga tcgagcaggg tgcactcgtg ctgagcaacc tgaaaatcga
     2461 cctcaagccc gacgtgtacg ccgcgggcgc gccgcgcatc acgcagatgc aacaggcaac
     2521 gcacatcttc gacacgacag tcgcctacgc cgacaaccgt ctcgctatca tggtgcggcg
     2581 cggcaatccc gcacaggtgc acacgttacg tgacctgggc aacgcaacgg tgcgagtgag
     2641 catgccgaat cctgcatggg agggaatcgc gcgacagata gaggacatgt atcgccgcgc
     2701 cggaggacag gcgctcgacg accggataat gaaggccaag gtcgctgatg gtaccaccgt
     2761 actcacacag atacatcacc ggcaaacacc gatccgcctc atgctggatc aggcagacgc
     2821 gggccccaca tggtacacgg aagcgtactt ccagcgcatg atcggcaatc ccatcgatct
     2881 cgtcgcgatt ccggattcca gcaacctgcg cgt
//
LOCUS       DATIMD010000287         3196 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_975925, whole genome shotgun sequence.
ACCESSION   DATIMD010000287 DATIMD010000000
VERSION     DATIMD010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3196
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_975925"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..746)
                     /locus_tag="VLI40_06615"
     CDS             complement(<1..746)
                     /locus_tag="VLI40_06615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96885.1"
                     /translation="MASEVVQLTRRGWGQTMRRDTWWLQPLVVFVILSAFLVYATWAA
                     FQNAHYEYGPYLSPFYSPLLFANSPHAWIQGSRPGWIPSILPFTPALLILPFPAGFRL
                     TCYYYRGAYYKAFWADPSNCTVGEPRTSYRGERKFPLILQNVHRYFMYVALVFIVILA
                     HDAYVAMWFPDPATGATHFGIGVGTLVLTINVILLGGYTLGCHSLRHLVGGYRDRLAG
                     VPVRRKCYDCVSCLNRGHMRWAWLSLFWVA"
     gene            complement(864..1502)
                     /locus_tag="VLI40_06620"
     CDS             complement(864..1502)
                     /locus_tag="VLI40_06620"
                     /inference="COORDINATES: protein motif:HMM:TIGR00257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HSU96886.1"
                     /translation="MMSDVAPYPVPAADHRVEETIERSRFICTLRRVDSPGAAQAFIR
                     EMSAEFADTTHNCWAYVAGPPGSTNVVGMSDGGEPHGTAGRPMLTVLLHSGVGEIAAV
                     VARYFGGTKLGTGGLVKAYGGIVQLALESLPLAERVDYTEVRLSIGYPNISVVQQAIV
                     SLRGEVMEQEYGVDVRYRLRVPRANAEALRAAVADATRGDGEFSIVPDKAAG"
     gene            1705..2412
                     /locus_tag="VLI40_06625"
     CDS             1705..2412
                     /locus_tag="VLI40_06625"
                     /inference="COORDINATES: protein motif:HMM:NF015658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF305 domain-containing protein"
                     /protein_id="HSU96887.1"
                     /translation="MTPSRSVGITTLLAVLTVAASTTARPVMAQATASAIADANAPGE
                     AAAIAKARADSARLPYTRADIDFMSGMIGHHSQAIVMSRWAPTHGAGSSVQTLAARII
                     NAQQDEIRTMQQWLRDRQLPVPDGHAGMMMNGSNMSMGDMKGEPLMPGMLSDAQMKEL
                     DAAHGRDFDLLFLRDMIQHHEGAITMVKQLFDSYGAGQDEIVFKLATDANVDQATEIA
                     RMQKLLVAEMFGADAQQ"
     gene            2557..>3196
                     /locus_tag="VLI40_06630"
     CDS             2557..>3196
                     /locus_tag="VLI40_06630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96888.1"
                     /translation="MASAAAAQAPAPVAQVVSPAANMAPGEPMPDPRVGLKAGAADAG
                     QASWNLKLMSSNPPTGKFVGSTNSDLAFVGPYAIQGSYNGFQVWNVENPGQVSLKTTY
                     YCPASQSDVSVYKNLLFVSSEATSGRLDCGGEGVKDTVSKERLRGIRIFDISDINNPK
                     YISNVQTCRGSHTHTLLVDPKDKANVYVYISGSAGVRSPSEMPGCSKVTPDKD"
BASE COUNT          671 a         1044 c          918 g          563 t
ORIGIN      
        1 aacgcgaccc agaaaagact gagccatgcc cagcgcatgt gaccgcgatt gagacagctc
       61 acgcagtcgt agcactttcg tcgcaccggc acaccagcca gtcgatcgcg atacccgcct
      121 acgagatgcc gcaacgagtg acagccgagt gtgtagccgc cgagcaggat cacgttgatg
      181 gtgagcacca gcgtgccgac tccgatgccg aagtgcgttg caccggttgc aggatcggga
      241 aaccacatcg cgacgtacgc gtcatgcgca aggatcacga tgaatacgag cgcgacgtac
      301 atgaaatagc gatgcacgtt ctgcaggatc agcgggaact ttcgctcgcc acggtagctc
      361 gtgcgcggct cgccaactgt gcagttggat ggatcagccc agaacgcctt gtagtacgcg
      421 ccgcggtagt agtagcaggt aagcctgaac cccgccggaa acggcaggat cagcagcgcg
      481 ggcgtgaacg gaagtatgct cggaatccat cccggtcggc ttccctggat ccacgcatgc
      541 ggtgaattcg cgaacagcag cggcgagtag aacggcgaca gatacggtcc gtactcgtag
      601 tgcgcgttct gaaacgctgc ccacgtcgcg tacaccagga atgcgctcag gatcacgaag
      661 accacgagcg gttgcagcca ccatgtgtca cgccgcatgg tctgacccca accgcggcgc
      721 gtcaactgaa ccacttcaga cgccatgaag tgctctctct tgaggggctc tatttcagga
      781 gaaggtactc cgcaggctca gccgtggata gaccattgcg gcctgcagac ccacgggcct
      841 ccggtcgtcc tgccgctctt ccatcaccca gcggccttgt cgggtacgat tgaaaattct
      901 ccgtcgcctc gcgtcgcgtc cgctacggct gcgcgcaatg cttcggcgtt tgcgcgtggc
      961 acgcgcagcc ggtagcgaac atccacgccg tactcctgct ccatcacttc gccgcggagt
     1021 gacacgattg cctgttggac aacggaaata ttcggatatc cgatcgacaa cctcacctcc
     1081 gtgtaatcca cccgctcggc gagcggaagt gattcgagtg cgagctgcac gattccgcca
     1141 tacgccttga ccagaccacc ggtgccgagc ttcgtcccgc cgaagtagcg tgcgacgaca
     1201 gccgcgatct cgccaacgcc gctgtgcagc agcaccgtaa gcatcggccg ccccgcagtt
     1261 ccgtgcggct cgccgccatc gctcatccct actacgttgg tgctgcccgg cggacccgcg
     1321 acgtatgccc agcagttgtg cgtcgtatcg gcgaactccg cgctcatctc gcggatgaac
     1381 gcctgcgccg cacccggact gtcgacgcgt cgcaacgtgc atatgaaccg gctccgctcg
     1441 atcgtctctt cgactcgatg atcggcggcc ggaaccgggt agggtgcaac gtcgctcatc
     1501 atacaatcgt agccgcgcgt gcaaccgttg cccggctgga tttgtcttac cccgtggctc
     1561 cagtcacacc ctccaggtcc cgggacaagg atacccctgt cccgtgcctt cacccctccg
     1621 ttcccaggtg ctagtattgg tatcgtccag ggcaggtttt cacagtgggg cgatcccaac
     1681 ctcgccccca ggagagtgct caaaatgacc ccatcgcgaa gcgtcgggat caccacgttg
     1741 ctggccgttc tcacggtggc tgcgtccacc actgcacggc ccgtcatggc tcaggcgact
     1801 gccagtgcga tcgccgatgc aaatgccccc ggcgaggcgg cggcgatcgc caaggcaaga
     1861 gccgacagtg cccgcctccc gtataccagg gcggacatcg acttcatgag cggcatgatc
     1921 ggccaccatt cccaggcgat cgtcatgtcc agatgggcgc ccacccacgg agccggttca
     1981 tcggtgcaaa cccttgccgc gcgaatcatc aacgctcagc aggatgagat ccggaccatg
     2041 cagcaatggc tccgcgatcg gcagttgccc gtgcccgatg ggcacgcggg aatgatgatg
     2101 aacggctcca acatgtcgat gggcgacatg aagggagagc cactgatgcc gggtatgcta
     2161 tccgacgccc agatgaagga gctcgacgct gcacacggtc gagattttga cctcctcttt
     2221 ctcagggaca tgatccagca ccatgaggga gcaatcacca tggtgaagca actgttcgat
     2281 tcgtacggcg cgggccagga cgaaattgtg ttcaagctcg caacagatgc gaacgtcgac
     2341 caggcaacgg aaatcgcacg aatgcagaag ctgctcgtcg cagagatgtt tggagcagac
     2401 gcacagcagt aaccgcagaa gtcaccagca gtcagcacca tcatgcccca cccaacacca
     2461 ctagaggaat cagctatgtc gttcgtgcac gagtcgctcc gatcgagagc gcgatccagt
     2521 ctggcaacaa ttctcaagtt gtcagtagcg atcagcatgg cctccgcagc agcggctcag
     2581 gcccctgctc ctgtcgctca ggtagtatcg ccagctgcca acatggcccc cggtgagccg
     2641 atgccggatc cgcgcgttgg cctcaaggcc ggtgcggcag acgcaggcca ggcgtcctgg
     2701 aacttgaagc tcatgtcgtc caaccctccc actgggaagt tcgtcggcag caccaactcc
     2761 gacctggcgt tcgtcggccc atacgcaatt cagggcagct acaacggatt ccaggtatgg
     2821 aacgtcgaga atccgggcca ggtatcgctc aagacgacgt actactgccc ggcatcgcag
     2881 agcgacgttt ccgtctacaa gaacctcctc tttgtttcga gcgaagctac cagcggacgc
     2941 ctcgattgcg gcggcgaggg cgtgaaggat acggtcagca aggaacgctt gcgcggcatc
     3001 cgcatcttcg acataagcga catcaacaac ccgaagtaca tctccaacgt gcagacctgc
     3061 cgtggctccc acacgcacac tctgctcgtc gatccgaaag acaaggccaa cgtctacgtc
     3121 tatatctccg gctcggctgg agtccgctca ccgagcgaga tgccaggctg ctccaaggtc
     3181 acgcccgaca aggatc
//
LOCUS       DATIMD010000288         3388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2418112, whole genome shotgun sequence.
ACCESSION   DATIMD010000288 DATIMD010000000
VERSION     DATIMD010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3388
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2418112"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..1017)
                     /locus_tag="VLI40_06635"
     CDS             complement(112..1017)
                     /locus_tag="VLI40_06635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96889.1"
                     /translation="MKQALEVLLAGVVDYAGLFPPAALDMAAATQAYAQYLDDPARSM
                     LGRFVVPVVRLREFEEAAAALLPRGVASEPWRLSALPGPDLTADIDLALKFNCRHWNE
                     SEIGHAVIDTLEIKVSTPPEIASACSIMPRQFAPYFEIPIGNDPLELVAAIKRGGGFA
                     KARTGGVVASAFPDAKDVARFMVRCRDAPVAFKLTAGLHHPLRAEYRLTYAPDAPRGT
                     MFGYLNMFVAAVLAWNGADESVILSALLSQSPRDFHFSDDAVAFDDNSVSIAVVREAR
                     EKFIMSFGSCSFREPVDDLAALSIS"
     gene            1145..1218
                     /locus_tag="VLI40_06640"
     tRNA            1145..1218
                     /locus_tag="VLI40_06640"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1179..1181,aa:Met,seq:cat)
     gene            1290..1363
                     /locus_tag="VLI40_06645"
     tRNA            1290..1363
                     /locus_tag="VLI40_06645"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1324..1326,aa:Met,seq:cat)
     gene            complement(1462..1752)
                     /locus_tag="VLI40_06650"
     CDS             complement(1462..1752)
                     /locus_tag="VLI40_06650"
                     /inference="COORDINATES: protein motif:HMM:NF016839.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HSU96890.1"
                     /translation="MRRRLIWGALVLGALLFALQAGEYSTLDIMRQHRRIGELSARGD
                     SLQHAVDSLTQAERLVRTDTATQERIAREEFGMVRGDEILYRFIQDSSATRP"
     gene            complement(1765..3045)
                     /gene="eno"
                     /locus_tag="VLI40_06655"
     CDS             complement(1765..3045)
                     /gene="eno"
                     /locus_tag="VLI40_06655"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HSU96891.1"
                     /translation="MSAIIEINARQILDSRGNPTIEADVTLESGVTGRAAVPSGASTG
                     EHEALELRDGDADRYNGKGVEKAIAAIEDEIQPEVIGLDAVEQMVLDRTMIALDGTEN
                     KGRLGANSILAVSLAAARAAAAELDLPLYRYVGGPMARVMPVPMMNVLNGGAHASNTV
                     DVQEFMIVPVGARDFANALRMGTEVFHALKKVLGKRGLSTAVGDEGGFAPDLPNDEEA
                     LNALVEAVEAAGYRAGKDVAFAIDVAASELYKSGKYTFRKSGGGTRDAAGMIELYTTW
                     LDKFPIVSIEDGLAENDWDGWAELTSALGDRVQLVGDDIFVTNSEYLARGINEDVANA
                     ILVKVNQIGTLTETLEAIELARANGYQSIISHRSGETEDTFIADLAVATNAGQIKTGS
                     ASRTDRVAKYNQLLRIEEELGDLAEFPGGALYGL"
     gene            complement(3053..>3388)
                     /locus_tag="VLI40_06660"
     CDS             complement(3053..>3388)
                     /locus_tag="VLI40_06660"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSU96892.1"
                     /translation="YDVAAERIKSGSSVVVFPEGTRGTDYAIRPFKKGPFVLAVKAGV
                     PIVPVVIHGTLGILPKGRLVMRPGPIDVYLLDQVATAGLKYDDRDALAHDVHDRMQTV
                     MESLYLNRK"
BASE COUNT          633 a         1072 c         1020 g          663 t
ORIGIN      
        1 ctcgctgaac acgcagaagg ggagattctg gatcgggaag tcgcagcccg gaatgttggc
       61 ggattcgacc cagcacggga gcgacggatc gtgtgtgagg tttattggca ttcaggaaat
      121 tgagagggct gcgagatcgt ctacaggctc gcggaaggaa caggaaccga acgacatgat
      181 gaacttctcg cgcgcttcgc gaactactgc gatggagacg gagttatcgt cgaacgcgac
      241 cgcatcatca gagaagtgaa aatcgcgcgg cgattgtgac agcagcgcag acagaattac
      301 gctctcgtcc gccccgttcc aggcgagcac cgctgcgacg aacatgttga gatagccgaa
      361 catcgtcccc cgcggggcgt cgggcgcgta ggtgagccgg tactctgcgc gcagggggtg
      421 atgcaagccg gcggtgagct tgaatgcaac gggcgcatcc cggcagcgca ccatgaagcg
      481 agcgacatcc ttcgcatcgg gaaatgcgct cgcgacaacc ccgccggtgc gggctttcgc
      541 gaacccgcca ccgcgcttga ttgcagccac cagttcaagc gggtcgtttc cgatcgggat
      601 ctcgaaatac ggcgcgaatt gccgcggcat gatgctgcat gcagacgcga tctcgggcgg
      661 cgtcgacacc ttgatctcca gtgtatcgat caccgcatgt ccgatctccg attcgttcca
      721 gtgccggcag ttgaacttga gcgcgagatc gatatcggca gtgagatcgg gccctggaag
      781 cgcgctgagc cgccacggct cgctcgccac gccacgtggc agcagtgcgg ccgccgcctc
      841 ttcgaattcg cggagccgca ccacggggac gacgaagcgc ccgagcatgc ttctggcggg
      901 atcgtccagg tattgggcat aggcctgcgt cgccgcggcc atgtcgagcg ccgcgggtgg
      961 aaacaggccg gcgtaatcca ccacacctgc gagcagaact tcaagggctt gcttcattcg
     1021 ctgagaggcg aaatctattc ggtcggtggg ggttcggtta catggcgagc acgtcgacgc
     1081 cttcgtgaaa agaggtcggc acgcgttgac agagtgccgc ccccgactag attagaaact
     1141 ctgacgcggg gtggagcagc ctggtagctc gtcgggctca taacccgaag gtcgcgggtt
     1201 caaaccccgc ccccgccata tagtgtttcg acggccggcc cctcgggccg gccgtcgtta
     1261 cgttgtaggg gataagtacg gagatgtacg gcagggtagc tcagctggtg agagcgcacg
     1321 actcataatc gtgaggtcgc gggttcgatc cccgcccctg ctactggaat cgaaggcccc
     1381 gtatagcacc gagctatacg gggccttttc cgttcgtgca tttacgcgga ccatggcatc
     1441 cgcgcggcgc ctgcatcgat cctatggcct ggtcgcgctc gaatcctgaa taaaccgata
     1501 cagaatctcg tcccctcgta ccatcccaaa ctcctcccga gcgatccgtt cctgcgtcgc
     1561 ggtatcggta cgcaccagac gctccgcctg cgtcagcgag tccaccgcat gttgcagtga
     1621 atcaccgcgt gcgctcagct cgcctatgcg acgatgctgg cgcatgatgt cgagcgtgct
     1681 gtactccccg gcctgcaggg cgaacaggag cgcgcccaga acgagcgcgc cccagatcag
     1741 gcgtcggcgc atcacagcgt cccgttacag cccgtacagt gcgccgccgg gaaactcggc
     1801 gagatcgccg agctcttcct cgatgcgaag cagctgattg tacttcgcga cccggtccgt
     1861 gcgactcgcc gagccggtct tgatctgccc cgcgttggtc gcgaccgcta ggtcagcgat
     1921 gaacgtgtcc tcggtctcgc cggaacggtg cgagatgatg ctctgatatc cgttcgcgcg
     1981 tgcgagctcg atcgcttcga gtgtttcggt cagcgttccg atctgattga ccttgaccag
     2041 gatcgcattt gcaacgtcct cgttgatgcc acgcgcgaga tactcactgt tcgtgacgaa
     2101 gatgtcgtcg cccacgagtt gcacgcgatc gccgagcgcg ctggtgagct ccgcccatcc
     2161 gtcccagtca ttttcggcga ggccgtcctc gatcgatacg attggaaact tgtcgagcca
     2221 ggtcgtatac agctcgatca ttccagccgc gtcgcgagtt ccgccgccgc tcttcctgaa
     2281 ggtgtacttg ccgctcttgt acagctcgga cgctgcgacg tcgatcgcga aggcgacatc
     2341 cttgcccgca cggtagccag cggcctcgac tgcttcgacc agcgcgttga gtgcctcttc
     2401 gtcgttcggg agatccggcg cgaaaccacc ctcgtcgccg acggcggtcg acaggccacg
     2461 cttgcccagc accttcttga gcgcgtgaaa cacttcagtg cccattcgaa gcgcattggc
     2521 aaaatccctg gcgccgactg ggacaatcat gaattcctga acgtccacgg tgttcgatgc
     2581 gtgagcgcca ccgttgagaa cgttcatcat cggcacaggc atcacgcgcg ccatgggacc
     2641 gccgacgtag cgatacagcg ggagatcgag ctccgcagcg gctgcgcgag cggcggccag
     2701 tgacactgcg agaatcgagt tcgctccgag tcgtcccttg ttctccgtac cgtcgagcgc
     2761 gatcatcgtg cgatccagca ccatctgctc cacagcatcg agcccaatta cttccggctg
     2821 aatctcgtcc tcgatcgcgg ctatcgcctt ctcgaccccc tttccgttgt accggtcagc
     2881 gtcgccgtcg cgcaattcga gcgcttcatg ctcgccggtc gatgctccgc tcggcaccgc
     2941 ggcacgtccc gttacaccac tctcgagcgt aacgtcggct tcgatcgtgg gattgccgcg
     3001 gctatccagg atctgacgcg cattgatctc gatgattgct gacatggttc cgttattttc
     3061 ggttgaggta aagactttcc atcactgtct gcatgcgatc atgcacgtca tgcgcaagcg
     3121 cgtcacggtc gtcgtacttg agacccgctg tcgctacctg atccagcaga tatacatcga
     3181 tcggacccgg gcgcatcacc agcctgccct tgggtagaat gccaagcgta ccatgtatga
     3241 ccaccggaac gatcggcacg ccagccttga ccgcgagcac gaagggtccc tttttgaaag
     3301 gcctgatcgc atagtcagtg ccgcgcgtgc cttccgggaa aactaccacg gagctgccgg
     3361 atttgatgcg ctccgccgcg acatcata
//
LOCUS       DATIMD010000289         2043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_399422, whole genome shotgun sequence.
ACCESSION   DATIMD010000289 DATIMD010000000
VERSION     DATIMD010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399422"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(209..1591)
                     /gene="sufD"
                     /locus_tag="VLI40_06665"
     CDS             complement(209..1591)
                     /gene="sufD"
                     /locus_tag="VLI40_06665"
                     /inference="COORDINATES: protein motif:HMM:TIGR01981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HSU96893.1"
                     /translation="MTDAVLTQAPDSPEVGRAGAPMHVATRDARATEYVALFDEIERD
                     EPQWLTAQRRASIESFARLGFPTTKNEDWHFTSVASLVEQTYTPVVKSSSALTARDIE
                     PFRFEGEWQTLVFLNGNFVAHLSDVEAGAKLYAGPLRKVLSDDRYARAIEQRLGGLAD
                     TRTHAFTALNSAFAGDGAFVHVAANTVAPRSVHLIFVSDDAAEGALVSPRNVIAMEHH
                     AEATVVESYVSLGNASYLTNAVTEVYVADGARLRHYKIQRESLRAYHVGSWYANQGSN
                     CAYEAFSFAVGADLSRTNIATLLDGEGSHVSLDGLYLVNGDQTVDHQTSVIHAKESCT
                     SHELYKGVMDGESHAVFNGKVYVRPEAQKTDGKQSNNNLLLSEGARVDTKPQLEIYAD
                     DVKCTHGATVGPVDSTALFYLKSRGIGPEIALRLLTYAFAAEVLEELTIPAVRDELEK
                     LAFERFAVGV"
     gene            complement(1588..>2043)
                     /gene="sufC"
                     /locus_tag="VLI40_06670"
     CDS             complement(1588..>2043)
                     /gene="sufC"
                     /locus_tag="VLI40_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HSU96894.1"
                     /translation="FLRSAYNEIRKARGEEEVDPLEFLDLIEERMKLVEMDASMLNRS
                     VNAGFSGGEKKRNEILQMAVLQPKLAILDETDSGLDIDALRIVAGGVNALRRPDNATI
                     VVTHYQRLLNYIVPDFVHVLANGRIVRSGGKELALELEERGYDWLLDAA"
BASE COUNT          371 a          629 c          643 g          400 t
ORIGIN      
        1 cggagattca gcagccgtcg aatggcatga agatgatgcc gatggttcta ctcgcagccg
       61 tggtgatagt aggcggcgcg gcgtactggg cgttgaatct gaggtagggc gccgtcaccc
      121 ccgctgtagg gcgcggatga atccgcgccc tacagcggga atgacgagtt cgggtgggtt
      181 ccgctaccgt gggaatgacg gacgcccatc acacacccac ggcaaagcgc tcgaacgcca
      241 gcttttccag ctcgtcgcgc accgccggga tcgtcagctc ttccagaact tcggcggcga
      301 acgcgtacgt gagcaatcgc agcgctatct ctggtccgat tccgcgactc ttgagataga
      361 acagagcagt cgaatcaacc ggcccgaccg tcgcgccgtg cgtgcacttg acgtcgtcgg
      421 cgtagatctc gagctgcggt tttgtatcta cgcgcgcgcc ttcggagagc agcagattgt
      481 tgttgctctg cttgccgtct gtcttctgcg cctcgggacg gacgtacacc ttgccattga
      541 agacagcgtg cgactcgcca tccatgacgc ccttgtacag ctcgtggctg gtgcagctct
      601 ccttcgcgtg aatgacgctg gtctggtgat ccactgtctg atcgccgttg acgagataca
      661 gcccatccag agaaacgtgc gagccctcgc catcaagcag ggtcgcgatg ttggtgcgcg
      721 agagatcggc gccgacggcg aacgagaacg cctcgtatgc gcagttgctg ccctgattgg
      781 cgtaccagga tccgacgtga tatgcgcgaa gactctcacg ctgaatcttg taatgccgga
      841 gccgcgcacc atcggcgacg tacacttccg tcaccgcgtt ggtgagataa ctggcgttcc
      901 cgagcgacac gtaactttcc acaacggtcg cctcggcgtg gtgctccatc gcgatgacgt
      961 tgcgcggtga taccagcgcg ccttcggctg catcatccga cacgaagatg agatgcacgc
     1021 tgcgcggagc gaccgtgttt gcggcgacgt gcacgaacgc tccatcgccg gcgaacgcgg
     1081 agttgagcgc ggtgaatgca tgcgtgcgtg tgtcggcgag accgcccagg cgctgctcga
     1141 ttgcgcgggc gtaacggtcg tcggacagta ccttgcgcaa cgggccggca tacagcttcg
     1201 cgcccgcctc gacgtccgac agatgagcga cgaagtttcc gttcaggaat acgagcgtct
     1261 gccattcgcc ttcgaagcgg aacggctcga tgtcgcgcgc ggtcagcgcc gacgacgact
     1321 tcacgaccgg cgtgtatgtc tgctcgacga gcgaggccac actggtgaag tgccagtcct
     1381 cgttcttggt ggtcggaaat ccgagcctgg cgaagctctc gatcgatgcg cggcgttgcg
     1441 cggtgagcca ctgcggctcg tcacgttcaa tctcgtcgaa gagtgcgacg tattcagtgg
     1501 cgcgcgcatc gcgcgtcgcg acatgcatcg gtgcgccagc gcgtccgact tccggcgagt
     1561 cgggggcctg cgtcagaacg gcgtcagtca tgccgcgtcg agcagccagt cgtaaccgcg
     1621 ctcttcgagc tcgagagcga gctccttgcc gcctgagcga actatgcgac cgttggcgag
     1681 cacgtgcacg aaatcgggga cgatgtagtt caacaatcgc tgatagtgcg tcactacgat
     1741 cgtcgcgttg tcgggacggc gcagcgcgtt gacaccacca gcgacgatgc gcagcgcgtc
     1801 gatgtcgagg ccggaatcgg tctcgtccag aattgcaagc tttggttgca gcacggccat
     1861 ctgcaggatc tcgttgcgct ttttctcacc gcctgagaaa ccagcgttca cggaccggtt
     1921 gagcatcgaa gcgtccatct cgaccagctt catgcgctcc tcgatcaggt ccaggaactc
     1981 gagcggatcc acttcctcct caccgcgcgc cttgcgaatc tcgttgtacg ccgagcgcag
     2041 gaa
//
LOCUS       DATIMD010000290         6563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1268246, whole genome shotgun sequence.
ACCESSION   DATIMD010000290 DATIMD010000000
VERSION     DATIMD010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6563
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1268246"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            306..3530
                     /locus_tag="VLI40_06675"
     CDS             306..3530
                     /locus_tag="VLI40_06675"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSU96895.1"
                     /translation="MRPTVWLVLPLCIGAEIAPQLAAAQQTGTTIVGVVTTDKGVPLQ
                     AAEVVVQGMGLGAATRPDGHYSITASAARSLGQQVTLTARLIGFAPKSVQIKLTPGTI
                     TQNFSLASNPLRLGEVVVTGAGTSSTREKLGNVINSVDSTAIAKSNESNVVNALAAKA
                     PGVSVVSESGVPGSSAYIRIRGIKSLSGDGQPLFVVDGVPIDNTTNVNGSNLTGSNTP
                     NRASDINPDDIASVDILKGAAAAAIYGARASNGVVLITTKSGQAGATRYTLNSSYSVD
                     NVSHSIPLQNTYGQGTNGKPGTCSTPDCSAASGSWGPALAPGTPTYDHFGEMFHTGHT
                     TNNHLTISGGNERTTFFASGGRDAQNGVIIGPNNYYDRTDVRLKATHKVFDNLKIGGN
                     ISFADDRGASVLRGGSVSGLMLGALRTPPEFDQFPYLSPTTGLQRSYRFPNPSPASLT
                     RSRGYDNPLFAVYDNPSTEETNRTIANLNADWQAKSWLRLQENLGGDYFGDTQLTGEA
                     FTASESPLGLVRRADLMHLQIDQNLIATATHTFNSNLSGTLTVGNNINSRRGREVDAS
                     GNGLIAPSPFSLNNTVTQLATEYDYVIHALSYFGEATVDLYNQLYLTGAVRNDGFSTF
                     GASNPRASYPKASLAWTFTNALGNTEHRGILSYGKVRASYGETGKEPNVYSTLSTLGR
                     AIFGSGYTDQLSSTQGGYGGLVTSGTQGNNNLRPERQKEFETGLDVGLFNQMADAGIT
                     YYRDNSTDVILSVPRPSTTGFSAQLLNGAAILNRGWEATLNVRPITTQKLTWEIGGQW
                     AQNETRVLSLNGASYIGAGGGTFSEAQPSATVGGTFAFRGLGYVRCGVTTSTNLKDPS
                     GKPVDLASACAGAPRGALYIGASGFPVNDPVNRVIGDPNPHWTGNLHSTLHMGSWALS
                     ALLDHKQGGMVANMTKGALNNFGTSIETAQRDVTRTFGVDFMPGATVGPGKGTPVQIG
                     QSWYTGLGSIYSGIGEPFMEDGTYTKLREVSVTYSLTGAFVRRAGFSSADLRISGRNL
                     HTWTKYTGMDPETNLAGADALIQGYDFFNMPQTRSFVFSVALNR"
     gene            3550..4923
                     /locus_tag="VLI40_06680"
     CDS             3550..4923
                     /locus_tag="VLI40_06680"
                     /inference="COORDINATES: protein motif:HMM:NF024181.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusD/RagB family nutrient-binding outer membrane
                     lipoprotein"
                     /protein_id="HSU96896.1"
                     /translation="MKRYIRNAVLAATIPVVVAGCGDNYLKCSDCITSPNAPTAATST
                     QRLVAVQAKLTQFLNGNLPRVVSMWMQQMAGTQLQYQVQDLYVLDGGSGDFSMPYTGG
                     GLIDIRSIEASSTASDDKIFLGIAETLKAWEIGTLADVWGDVPYTQAAKADSFPTPKY
                     DPQQVVYDSVLATLDQAIANLNTGTGVGPGAAEIIYKGDPTLWVKLAHTLKARFYLHL
                     AERDPTNYAKALTEANLGISSNAADYITYQTSNANEQNDWYQFMLTGTRTGLMRAGKY
                     QVDLLKRIGDPRLAEYYQMAAGATDYIGATPGQGLAGNMATISAKRLAPDYRQPLVTY
                     NENLLIKAEALFQLGNSQAALDTLNRERASWATATPWHSALTLPPIAGPVSLASIMQE
                     KYITLFQNVEAWNDYKRTCLPALVPANGAASLPGRMLYTNGERQTNPNVPADPTLNWN
                     DPHACGA"
     gene            4994..>6563
                     /locus_tag="VLI40_06685"
     CDS             4994..>6563
                     /locus_tag="VLI40_06685"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96897.1"
                     /translation="MTFGAGAAMAQRAGAPNRGLETEPFAFEYMGPANGGRIASVSGV
                     AGDPRTWYMGSASGGVWKSSDSGRTFVPVFDSMDVQAIGALATAPSEPGTVWAGTGEA
                     WAIRDADVMGDGIYKSTDAGKTWKNMGLRETGRIGRIIVNPTNANVVFVCALGRTTGP
                     QQERGVYRTTDGGKSWTRVLFVDDGTGCSGLSMDAHDPNVVFAGMWQVVMHTWVMLGG
                     GPSSGLYVTRDGGNTWSKLTDPGLPKSPLGKIDVAVAPTNSSRVYALIQTADQGSVWR
                     SDDGGRTWKNVNWQRTLIGRAGYYIDIKVSSGNPDEILVANSSFWQSKDGGKTFKEVR
                     WGGDTHDIWIDPRNPDSFALTDDAGAHITFDHGKSFTQVSLPNGQMYHVAVDDQVPYW
                     IYSNRQDNSYPMRGASDAPIRTFTRRPPPVESDSTRGDSTRRDSTARSRNVRDTSAGA
                     PRRNATAPEGPSDTPQSFGNVYSRTPWQDGLGGCESGFTLPDKSDTNIVWASCYGNEV
                     TRYDARTKLARSVSP"
BASE COUNT         1374 a         1997 c         2008 g         1184 t
ORIGIN      
        1 cagcagactt tgtaccttcc gggtgcatgg cttcacaaag gacggaactc aatagttgtg
       61 ttcgagctga atggacacga tggcgcgccg gaaatcaccg gattgacgca gccgattctc
      121 acacaactga acgccggacc acccagccga tagctcgctc ctaaaaaaat tggaatgctt
      181 gcggaatgta aaatgggata ctatatcctg tcggtcctcc gcggcggccg ccgaagttcc
      241 tggtgggtgc cagtctgctt tcacatttcg ctgcacacgc tgcactgtgc ggctggagag
      301 gagtcatgag acctacggta tggttggtgt tgcccctctg catcggcgcg gagatcgcgc
      361 cgcaactcgc agcagcgcag caaactggaa cgacgatcgt cggcgttgtc accacagaca
      421 agggtgtccc gcttcaggct gcggaagtcg tcgtgcaggg aatggggctt ggcgccgcaa
      481 cgcggcctga cggtcactac agcataacag cgtccgccgc ccgatcactc gggcagcagg
      541 tcacgctcac cgcgcgactc atcggcttcg caccgaaatc ggttcagatc aaactcacgc
      601 ctggcactat cactcagaat ttcagcctcg cgagcaaccc gctgcgtctt ggcgaggtgg
      661 tggtcacagg cgcgggtacg agcagcacac gcgagaaact cggtaacgtc atcaactcgg
      721 tcgactcgac tgcaatcgcg aagagcaacg agtcgaatgt cgtcaatgca cttgcagcca
      781 aggcgcctgg cgtgtcggtc gtatcggagt cgggtgtgcc cggatcgtcg gcgtacatcc
      841 gcattcgcgg tatcaagtcg ctttccggtg atggacagcc gctgtttgta gtcgacggag
      901 tgccgatcga caacacgacc aacgtcaatg gcagcaatct caccggctcg aacacgccga
      961 accgcgcgtc ggacatcaac ccggacgaca tcgcgtcggt cgacatactg aaaggtgccg
     1021 cggctgccgc gatctacgga gcgcgcgcgt ccaacggtgt cgttctcatc accaccaagt
     1081 cagggcaggc tggggcgacg cgctatacgc tcaattcgag ctattccgtg gacaacgtca
     1141 gccacagcat cccgctgcag aacacgtacg gccagggcac caacggcaag cccggcacat
     1201 gctcgacgcc ggactgttcc gctgccagcg gttcctgggg acctgcgctt gctccgggaa
     1261 cgccgaccta cgatcacttc ggcgagatgt tccacacggg acacacgacg aacaaccatc
     1321 tcacgatatc gggcgggaat gagcgcacca ctttcttcgc atccggcggc cgcgatgcgc
     1381 agaacggcgt gatcatcgga ccgaacaact actacgaccg gaccgacgtg cgcctcaagg
     1441 cgacgcacaa ggtcttcgac aatctcaaga ttggcggcaa catctcattt gcggacgatc
     1501 gcggcgcctc ggttctccgc ggcggatcag tgtccggtct gatgctcggc gctctgcgga
     1561 cgccgccaga attcgatcag ttcccgtacc tgtcgcccac aaccggtctc caacggtcgt
     1621 accgctttcc caatccgtcg ccggcatcgc ttacccggtc gcgcggttat gacaatccgc
     1681 tgttcgccgt gtacgacaat ccgagtaccg aagagacgaa ccgcacgatc gcaaatctca
     1741 acgcggactg gcaggcgaag agctggctgc gcctgcagga gaatctgggc ggcgactact
     1801 tcggtgatac tcagcttacg ggcgaggcat tcaccgcgag cgaatctcca ctcggtctcg
     1861 tccgacgcgc cgacctgatg catctgcaga tcgaccagaa tctgatcgca actgcgacgc
     1921 acaccttcaa ctccaacctg agcggtacac tgaccgtcgg caacaacatc aacagccgtc
     1981 gaggccgcga ggtggatgca tccggaaacg gactcatcgc gccgtcaccg ttttctctca
     2041 acaacacagt gacgcagctc gccacggagt acgactatgt gatccacgca ttatcgtact
     2101 ttggcgaggc gactgtcgat ctctacaatc agctgtatct caccggcgcg gttcgaaacg
     2161 acggtttctc cacgtttggt gcgagcaatc cgcgcgcgtc atatcccaag gcgagtctgg
     2221 cgtggacgtt caccaatgca ctcgggaaca ccgagcaccg cggaatcctg agctacggca
     2281 aggtacgcgc ctcgtacggc gagacgggca aggagccgaa cgtctactcg acgctgtcga
     2341 cactcggtcg tgcaatcttt ggcagcggat acaccgatca actgtcatcg acgcagggtg
     2401 gttacggcgg tctcgtcacc tccggcacac agggtaacaa caacctcaga cccgagcgcc
     2461 agaaggagtt cgagacaggt ctcgatgtcg gtctgttcaa ccagatggca gacgccggta
     2521 tcacgtatta ccgtgacaac tcgacggacg tgattctgag tgtaccgcgt ccatcgacaa
     2581 cgggtttctc tgcgcaactc ctcaatggcg ccgcaattct caaccgtggt tgggaagcga
     2641 cgctcaacgt gcggccgatc accacacaga agctgacgtg ggaaattggc ggtcagtggg
     2701 cgcagaatga aacgcgcgtg ctgagcctca atggtgcgtc gtacatcggc gcgggtggcg
     2761 gaacgttctc cgaagcgcag ccgtccgcga cggttggtgg aactttcgcg ttccgcggcc
     2821 ttgggtacgt tcgctgcggc gtgaccacga gcaccaatct gaaggaccct tctggcaagc
     2881 cggtcgatct cgcgtcagcg tgtgcgggtg cgccgcgcgg tgcactgtac atcggagcat
     2941 ccggtttccc tgtgaacgat cctgtcaatc gtgtaatcgg cgatcccaat ccgcactgga
     3001 ccggcaatct gcactcgacg cttcacatgg gaagctgggc cttgtctgcg ctgctcgacc
     3061 acaagcaggg cggcatggtc gcgaacatga ccaagggtgc gctcaacaac ttcggaacct
     3121 cgatcgagac cgcgcagcgc gacgtcacgc gcacattcgg cgtggacttc atgcctggcg
     3181 cgacagtggg accgggcaag ggcactccgg tgcagatcgg gcagtcgtgg tacaccggac
     3241 tcggcagtat ctactccggg ataggcgagc cgttcatgga ggatggcacc tacaccaagc
     3301 tgcgtgaggt ctcggtgacg tactcgctca ccggagcgtt cgtgcggcgt gccggattca
     3361 gcagcgccga tctccggatc tcagggcgca acctgcatac ctggacgaag tacacgggca
     3421 tggaccccga gaccaatctc gcgggcgcag acgcactgat acagggctac gacttcttca
     3481 acatgccgca gacgcgatcg ttcgtgtttt ccgtcgcgct gaaccgctga tcccaaagga
     3541 gatccatccg tgaagcgata catcagaaac gcggtactcg cggcgacgat cccggtcgtt
     3601 gttgcgggat gcggcgacaa ttatctcaag tgctccgact gcatcacgag tcccaatgca
     3661 ccgacagcgg caacttccac gcaacgcctc gtggccgtac aggcgaagct cacgcagttc
     3721 ctcaacggca atctgccgcg cgtggtatcg atgtggatgc aacagatggc gggaacgcag
     3781 ctgcagtatc aggtgcagga tctgtacgtg ctggatggtg ggagcggcga cttcagcatg
     3841 ccctacaccg gaggcggcct gatcgacatt cgctcgatcg aggcgagctc gacggcttcg
     3901 gacgacaaga tatttctcgg gatcgcggag acgctcaagg cgtgggagat cggaacgctc
     3961 gccgacgtct ggggcgacgt gccgtacacc caggctgcga aggctgactc ctttccaacg
     4021 ccgaagtacg atccacagca ggttgtatac gacagtgtgc tggcaacgct ggatcaggcg
     4081 attgccaatc tcaataccgg cacgggcgtg ggacccggcg cggcggagat catctacaag
     4141 ggtgatccca cgctctgggt caagctcgcg cacactctca aggcgcgatt ctatcttcac
     4201 ctggccgagc gcgatccgac caattatgca aaggccctga ccgaggccaa tctgggcatc
     4261 tcgagcaatg cggccgatta catcacgtac cagaccagca acgcaaacga gcagaacgac
     4321 tggtatcagt tcatgctcac gggaacgcgc acgggtctca tgcgtgcggg caagtatcag
     4381 gtcgacctgc tcaagcgcat cggcgatccg cgtctggcgg agtattatca gatggccgcg
     4441 ggtgcgacgg attacatagg cgctacgccg ggccaggggc tggccggaaa catggccacc
     4501 atcagtgcaa aacgtctcgc tccggattac cgtcagccgc tcgtcacata caatgagaat
     4561 ctgttgatca aggcggaggc gttgttccag cttggcaaca gccaggcggc gctcgatacg
     4621 ctcaatcgcg agcgtgcctc ctgggcgacc gctacgccat ggcactccgc attgacactt
     4681 ccgccgatcg ccggtccggt gtcacttgcg agcatcatgc aggagaagta catcaccctg
     4741 ttccagaacg tcgaggcatg gaacgactac aagcgtacat gtctgcctgc gctcgttccg
     4801 gcgaacggtg cagcgtcgct gcccggacga atgctttaca cgaacgggga gcgccagacg
     4861 aatccgaacg ttcccgcgga tccgacgttg aactggaatg acccgcatgc gtgcggcgcc
     4921 tgatcacaaa cacaccggtc tctcaatgca caatcgttca atctctctga tcacggcggc
     4981 tgttggatta gcggtgacat tcggtgcggg cgctgcgatg gcgcagcgtg ccggcgctcc
     5041 gaatcgcgga ctggagacgg agccgttcgc gttcgaatac atgggtcccg cgaacggtgg
     5101 ccgcatcgca tcggtgagtg gtgtcgcggg tgatccgcgc acgtggtaca tgggctcggc
     5161 gtcgggcgga gtatggaagt cgagcgatag cggtcgcacg ttcgtgccgg tgttcgacag
     5221 catggatgtg caggcgatag gcgcactcgc gaccgccccg tcggagccgg gcacggtatg
     5281 ggccggcacc ggcgaggcgt gggcgattcg cgatgcggac gtcatgggtg atggaatcta
     5341 caaatccacc gacgccggca agacgtggaa gaacatgggc ctgcgcgaaa cggggcgtat
     5401 cggacggatc atagtcaatc cgaccaacgc gaacgttgta ttcgtgtgcg cgctcggtcg
     5461 cacgacgggt ccgcaacagg agcgcggagt gtatcgcacc accgatggcg gcaagtcgtg
     5521 gacgcgcgtg ctgttcgtgg acgacggcac cggatgctcg ggactgtcga tggacgcgca
     5581 cgatccgaac gtcgtgttcg cgggaatgtg gcaggttgtg atgcacacgt gggtgatgtt
     5641 gggtggcggt ccatcgagcg ggctgtacgt cacgcgcgac ggcggcaata cgtggagcaa
     5701 gctcaccgat cccggccttc ccaaatcacc gcttggcaag atcgacgtcg cagttgctcc
     5761 gacgaattcg agtcgggtat acgcgctgat acagactgcc gatcagggat ccgtctggcg
     5821 atccgatgac ggtgggcgca cgtggaagaa cgtaaactgg caacgtaccc tcatcggtcg
     5881 cgccggatat tacatcgaca tcaaggtgtc gagcgggaat ccggacgaga tcctggtcgc
     5941 caacagcagc ttctggcagt ccaaggacgg cggcaagacg ttcaaggaag tacggtgggg
     6001 aggtgatacg cacgacatct ggatcgatcc aagaaacccg gacagctttg cgctgaccga
     6061 tgacgccggt gcacacatca ccttcgacca cggcaagagc ttcacgcagg tatctctccc
     6121 caacgggcag atgtaccacg tggctgtcga tgaccaggtg ccgtactgga tatactccaa
     6181 tcgccaggac aacagttatc cgatgcgtgg tgcgagcgat gcaccgattc gcacctttac
     6241 gcgtcgccct ccaccggtgg agagcgacag cactcgcgga gacagcacgc gccgtgattc
     6301 tactgcgcga agcaggaacg tccgtgatac atccgcaggg gctccgcgcc gcaacgcgac
     6361 cgcacccgag ggaccgtccg acactccaca gagttttggc aacgtgtaca gccgcacgcc
     6421 gtggcaggat gggcttggcg gatgcgagtc tggtttcacg cttccggaca agtcggacac
     6481 caacatcgtg tgggcgagct gttacgggaa tgaagtcact cgttacgatg cccgcaccaa
     6541 gctcgcgcgt tcggtgagtc cgt
//
LOCUS       DATIMD010000291         4939 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_691119, whole genome shotgun sequence.
ACCESSION   DATIMD010000291 DATIMD010000000
VERSION     DATIMD010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4939
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_691119"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VLI40_06690"
     CDS             <1..470
                     /locus_tag="VLI40_06690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit C"
                     /protein_id="HSU96898.1"
                     /translation="ITENGRVIGSRLIGQRFAGARYFHPRPSAAGAGYDPLASGGTNK
                     GPTDRKLADTLIANAVNSIIASDGAHWGGVPADLATSSGSGLDPDISPASAMVQIARV
                     ARARNGDSATVAELVTRHIQGRQFGLLGEPRVNVLSLNLALDSARTLGTRRKP"
     gene            470..1882
                     /locus_tag="VLI40_06695"
     CDS             470..1882
                     /locus_tag="VLI40_06695"
                     /inference="COORDINATES: protein motif:HMM:NF019268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSU96899.1"
                     /translation="MDGYGQLARVALPALIFTLVVPASVWAQPTDSASQNDSSAIAAA
                     SVCGADSTPLPFAFADFTWLNGNSRQHVSVLDTKAFTGEFRADVSYVGDFNRPRDHTL
                     VGTSESGRTSEFQVQQLGLGGDFHCGHARGRVMTQFGMYSTMTPRNDASPARGQWDLA
                     NAYRYLSEAYGGYHWSKLSGINLDAGIFMSYIGLFSYYNYDNWAYQPSYVSSNTPWFF
                     NGVRLQVFVNDKLKIEPWLVNGWQSYGMFNGAPGAGLQVLWRPNGAVSVHSNSYYGHD
                     WLGIPHRARVHFDNSLQVKYYDRPTKRFDRAAFSLTVDAGCERGGGVQCVSSGPGRPA
                     QNFLGFMFYNRAWFAANTVGLTLGGGAMNNPGRYLVLMPPVNGATAFSGTPYFTENRG
                     DKFSAWDGSATLDFMPDEFTTFRIEFDHRAASVPYFSGSGGVTPPGGNTGPAGSFIQG
                     WSPDLRKTESRVNLALLVKM"
     gene            1892..3094
                     /locus_tag="VLI40_06700"
     CDS             1892..3094
                     /locus_tag="VLI40_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HSU96900.1"
                     /translation="MITSSNGEAIGTESTPGATDFLRLLESRERGKLKVYIGSFAGVG
                     KTYRMLQEGNALRARGIDIVTGFVETHGRAETEAQLADLEVIPRRRVEYRGVVLEEMD
                     VDAVIARAPAVALIDELAHTNVPGGRHSKRWQDVEDILDAGISVISAMNIQHIESLND
                     VVQETLGVTVRETVPDWVLAKADQVVNLDISAEDLRQRLLEGKIYAPDKIQSALANFF
                     TEENLTTLRELALREVASSVDRIREGIAARSPEGSAGRGGRTADRILVAMSSNPPYTQ
                     LLLRKASRIAGRLNSDWYCVYVQTPSERSDRIDSAIQRRLVENIQAAQSMGAEIVKLE
                     GSDVAAAICQFAREKNITLAIVGQSRRSFLDHIRRGSVIDKLINNTQDLDVLVAAFNE
                     RPSTQQSP"
     gene            3091..3738
                     /locus_tag="VLI40_06705"
     CDS             3091..3738
                     /locus_tag="VLI40_06705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96901.1"
                     /translation="MSTPIAPDTDYASALAAAATSAERSLDNARIPLHILLTAQFGEL
                     NDNQEEMLRDAAAALDDIAEELRALRDIASVDRAAAGARRDIVRIGEIIRALQPELLA
                     QATRSDVTLTINIAPALPSTTGAFTQLRDAIRLTLADDIRYAIPGSTVTIDAVATADE
                     IRITSCCGASRSVSVSLLLAERLLIGQGARLEQADGRTTIALPRLTPASGTGRDR"
     gene            3748..4689
                     /locus_tag="VLI40_06710"
     CDS             3748..4689
                     /locus_tag="VLI40_06710"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HSU96902.1"
                     /translation="MNEISGIHHVTAITGAAQANLDFYTQALGMRLVKKTVNQDVPDT
                     YHLFYADADGNPGTDLTFFPWADSPPVQDGIGLAMEVSLAIPAASTTYWRDRLRDFGV
                     AIEAEQVRRSEQALVIRDPFGQPIALVATSDSRTFTAWDRSPVPAEHQIRGLHSVRLW
                     ERDLALTENFLVNVLGFHALGAEDGWHRYGVSDGGSGKHLDIREIPDGARGRWGVGGI
                     HHVAWRVADDAAQLAVRARVQTAHRRPTEVIDRFWFHSVYFLEPGGVLFEVATDGPGF
                     AIDESAESLGEKLVLPPWLEPERAKIESELPPLSVLP"
     gene            complement(4740..>4939)
                     /locus_tag="VLI40_06715"
     CDS             complement(4740..>4939)
                     /locus_tag="VLI40_06715"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HSU96903.1"
                     /translation="GSCPAGYQLNGSYFGSYAGHVDPGVGANFAFIASVTPEPSSIAL
                     LATGLFALAPAIARKRRRRQR"
BASE COUNT          965 a         1532 c         1508 g          934 t
ORIGIN      
        1 tcataaccga gaatggccgg gtaatcggaa gcaggctcat tggtcagcgt ttcgccggcg
       61 cacgatattt tcatccgcgt ccatcagccg ccggggccgg ctacgatccg ctcgccagcg
      121 gtggcaccaa caaggggccg acagaccgca agcttgcaga tacgctcatt gccaatgcgg
      181 tgaattcgat cattgcaagt gacggcgcgc attggggcgg cgtccccgcc gacctggcga
      241 cttcatccgg gtcagggctg gatcctgaca tctcgccggc aagcgcgatg gttcagatcg
      301 cgcgtgtagc gcgtgcccgc aacggcgatt ccgcaacggt cgccgagctc gtcactcgac
      361 acattcaggg acgccagttt ggcttgctcg gcgagccccg cgtaaacgtg ctctctctga
      421 accttgcgct cgattccgcg cgaactctcg gcaccaggcg taaaccgtga tggacgggta
      481 cggtcaactg gcacgagtgg ccctgccggc gctgatcttc acgctcgtcg taccggcgag
      541 cgtctgggcg cagccgaccg attcggcttc acaaaatgac agctcggcga tcgcagcagc
      601 gtccgtctgc ggcgcggaca gcaccccgtt accgttcgcg ttcgccgact tcacctggct
      661 gaacggaaat agccggcagc atgtatcggt gctcgatacg aaggcgttta ccggtgagtt
      721 ccgtgccgac gtcagttacg ttggtgattt caacaggccc agggatcaca cactggtcgg
      781 tacatcggag agcgggcgca cgagtgagtt ccaggtgcaa cagctcggcc tcggaggaga
      841 ctttcactgc ggtcacgcgc ggggacgagt catgacacag ttcggcatgt actctacgat
      901 gactccgcgc aacgacgcca gccccgcgcg cggccagtgg gacctcgcaa atgcgtaccg
      961 ctacctgtcc gaggcgtacg gtgggtatca ctggagcaag ttgagcggca tcaacctcga
     1021 cgccggcatc ttcatgtcgt atatcgggct gttcagctat tacaactacg acaactgggc
     1081 gtaccagccg tcctacgtgt cgtcgaatac accgtggttc ttcaacggcg tgcgattgca
     1141 ggtattcgtc aacgacaagc tcaagatcga accgtggctc gtcaacggct ggcagtcgta
     1201 cggaatgttc aatggtgcgc ctggcgccgg acttcaggtg ctgtggcgtc ccaacggcgc
     1261 agtttcggtt cactccaaca gctattacgg tcatgactgg cttggaatcc cccatcgggc
     1321 gcgcgttcac ttcgacaaca gcttgcaggt gaaatactac gaccggccca ccaaacggtt
     1381 tgacagagcg gcgttctcgc tcactgtcga cgccggatgc gagcgcggcg gcggagtgca
     1441 gtgcgtatcg tccggcccag gcagaccagc ccagaatttt ctcggattca tgttctacaa
     1501 ccgcgcgtgg tttgccgcta acaccgtcgg ccttacgctc ggcggcggag cgatgaacaa
     1561 ccccgggcgg tatctggttc tcatgccacc ggtcaacggt gcaactgctt tttcaggaac
     1621 tccgtatttt acggaaaatc gcggcgacaa attcagcgcg tgggacgggt cagcgacgct
     1681 cgacttcatg ccggacgagt tcacgacgtt ccggatcgag ttcgaccacc gcgccgctag
     1741 cgtaccgtac ttcagcggct ccggtggtgt tacaccgcct ggcggtaaca cgggaccggc
     1801 tgggtccttc atccagggat ggtcgcccga tcttcgcaag actgagagcc gggtcaatct
     1861 ggcgcttctc gtaaagatgt gagggatcgg gatgataacc tccagtaacg gcgaagcaat
     1921 cggcaccgag tcgacgcccg gagcgactga ctttctgcgc ctgctcgaga gtcgcgagcg
     1981 cggcaagctc aaggtttaca tcggatcgtt cgccggcgtc ggcaagacct accgcatgtt
     2041 gcaggaaggt aacgcactcc gcgctcgcgg catcgacatc gttacgggct tcgtcgagac
     2101 gcacggacgc gcggagaccg aagcgcagct tgccgatctc gaggtgatcc ctcgtcgccg
     2161 cgtcgagtac cgcggagtcg tcctcgaaga gatggacgtg gatgcagtga ttgcgcgcgc
     2221 tccggcggtc gcattgatcg acgagcttgc gcatacgaac gttccgggcg gtcgccacag
     2281 caagcgctgg caggatgtcg aggatatact cgacgctggc ataagcgtca tcagcgcaat
     2341 gaacatacag cacattgaat cgctcaacga cgtggttcag gagacgcttg gtgtaaccgt
     2401 ccgcgagacc gtgccggact gggtgcttgc caaggcggat caggtcgtca acctggacat
     2461 aagcgccgag gacctccgcc aacggctgct cgaaggcaaa atctacgcgc ctgacaagat
     2521 tcagtcggca cttgccaatt tcttcaccga ggagaatctc acgacgctgc gcgagctcgc
     2581 tctgcgtgaa gtggcgagca gtgttgaccg tatccgcgaa ggtatcgccg cacggtcgcc
     2641 cgaggggagc gcaggccgcg gcggccgaac ggcggaccgt attctggtcg cgatgtcgag
     2701 caacccaccg tacacgcagc tgctgctccg caaggccagc cgaatcgccg gccgcctcaa
     2761 ctctgactgg tactgcgtat atgtgcagac tcccagcgag cgaagcgatc gtatcgactc
     2821 cgcgattcag cggcgattgg tggagaatat ccaggcggca cagagcatgg gtgccgagat
     2881 cgtaaagctc gaaggctccg acgtggccgc tgccatctgt cagtttgcac gcgagaagaa
     2941 cataacgctg gcgatcgtcg gtcagtcgcg tcgaagcttt ctggatcaca tccggcgcgg
     3001 ctctgtcata gacaagctca tcaacaatac tcaggacctc gacgtcctgg ttgcagcctt
     3061 caacgagcgt ccatccacac agcagtcacc atgagcacac caatagcacc agacaccgac
     3121 tacgcatccg cacttgcagc cgccgccacg tccgccgagc gctcgctcga caacgcgcgc
     3181 ataccactcc acattctgct gaccgcgcaa ttcggcgagc tcaacgacaa tcaggaggaa
     3241 atgcttcgcg atgccgccgc cgcgctcgac gacattgcgg aggagctgcg tgcgttacgc
     3301 gacatcgcga gtgtggatcg cgccgctgcc ggcgcgcgac gcgacatcgt gcgaattggt
     3361 gagatcatcc gcgcacttca gccggagttg ctcgcgcagg ccacccggtc ggatgtaacg
     3421 ctgaccataa atattgcacc ggcattgccg agcactaccg gcgcattcac gcagcttcgc
     3481 gacgcaatcc ggctcacgct cgccgacgac atacgatatg ccatacccgg cagcacggtc
     3541 acgatcgacg ccgttgccac ggcggatgag attcgcatca cctcatgttg cggcgcgtcc
     3601 cgatctgtga gcgtcagcct tttgctggca gagcgcctgc tcatcggcca gggcgcacga
     3661 ctcgagcagg ctgacggaag gacgacgatc gcgcttccga gattgacccc ggcatctggc
     3721 actggacgtg atcgttaggt ttcacgcatg aacgagatca gcggaatcca tcacgtcacg
     3781 gccatcaccg gcgccgcgca ggcaaatctg gacttctaca ctcaggcgct gggcatgcga
     3841 ctcgtgaaga agaccgtcaa tcaggacgta ccggatacgt accacctgtt ctacgccgac
     3901 gccgatggca atcccggcac cgacctgaca ttctttccgt gggctgattc accgccggtg
     3961 caggacggga ttggtctcgc aatggaggta tcgctcgcga tccctgccgc aagtactacg
     4021 tactggcgcg atcgcctccg cgatttcggt gttgcgatcg aagctgaaca ggtgcgtcgc
     4081 tctgaacagg cactggttat ccgcgacccg ttcgggcaac cgatcgcact cgttgcgacg
     4141 agcgacagtc gcaccttcac tgcatgggac cggagtcccg ttccagccga gcatcagatc
     4201 cgcggcctgc attcggttcg tctgtgggag cgtgacctgg cgcttactga aaattttctc
     4261 gtcaacgtgc tcggctttca cgcgctcggt gccgaagatg ggtggcaccg ctacggcgtg
     4321 agcgatggcg gatccggcaa gcatctggac attcgtgaaa tccccgatgg tgcgcgtggc
     4381 cgttggggag tgggcggaat tcatcatgtg gcatggcgcg tcgcggatga cgctgcgcag
     4441 cttgcggtgc gcgcgcgagt tcaaaccgcg caccgccgtc caaccgaagt catagaccgg
     4501 ttctggttcc actcggttta tttcctcgaa ccgggcggtg tgctgtttga agtcgcgacc
     4561 gacggtcctg gtttcgcaat cgacgagagc gccgagtcgc tcggagagaa gctcgtactt
     4621 ccgccgtggc tcgagccgga gcgtgcgaag atcgagtcgg agttgccgcc gctgtcagtg
     4681 ctgccgtaaa gtgctggcgt aaagcggtga ccggagcggc ggcagtcgtg ctggttcgct
     4741 cagcgctgcc gccgccgcct cttgcgagct atcgccggtg ctagcgcgaa caatcccgtc
     4801 gcgagcaatg caatcgatga cggctcgggt gtcaccgacg cgatgaacgc gaagttcgct
     4861 ccgactcccg gatccacatg tcccgcatag gatccgaaat agcttccgtt cagttgataa
     4921 cccgctggac agctgccat
//
LOCUS       DATIMD010000292         1771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2419630, whole genome shotgun sequence.
ACCESSION   DATIMD010000292 DATIMD010000000
VERSION     DATIMD010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2419630"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1352)
                     /locus_tag="VLI40_06720"
     CDS             complement(<1..1352)
                     /locus_tag="VLI40_06720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96904.1"
                     /translation="MQKIRGGAAWLATVFILGGCTQAGTGSTSSPTDLSGPFDVVIAN
                     GRVVDGTGNPWYYADVAIRGDRIAAVAPPHALDSAKATHRIDAKGLVVTPGFIDMQGQ
                     SADAFVNGDGRAISKITQGVTSEILGEGSTPAPANDKILALDSATATPSDTAMIRAMH
                     GFTGERGFSAWLDAMEHHGVAVNVGSYLGAETVRTYAMGAAPGAPSTAQLDTMRRVVR
                     DAMRDGAFGVASALIYPPGSYAGTPELIEIARAMSPFHGTYITHMRSEDDSLLEATDE
                     AMRIGREGGVPVILYHLKAAGPKNWYKEPALLAKIDSARAAGQDVTATMYPYPASSNG
                     LSSCVPPYVSANGKLLENLRDSTKLPRIEREMADASLGVTADCQGITPDQIMVVGFQK
                     PQFKKYEGKRLSEIAKRMGTTWQHAVVEILLAGDTPGRVTFSMNEANVAMEMQKPWMM
                     "
     gene            complement(1491..>1771)
                     /locus_tag="VLI40_06725"
     CDS             complement(1491..>1771)
                     /locus_tag="VLI40_06725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96905.1"
                     /translation="RVDVFFDNSPAFRLEPDAALKGVHPVAWFDSDHPLRSGWAWGQN
                     YLDGAVAIAEAKVGQGQLFLFGPEITFRAQPHGTFRFLFNGIYGGGEK"
BASE COUNT          345 a          582 c          493 g          351 t
ORIGIN      
        1 aacatcatcc acggcttctg catctccatc gccacattcg cctcgttcat cgagaacgtg
       61 acgcgacccg gggtgtcgcc cgcgagcagt atctcgacca ccgcatgctg ccaggtagtt
      121 cccatccgct tcgcgatctc ggacagccgc ttgccttcat acttcttgaa ttgtggcttc
      181 tggaatccga cgaccattat ctgatccggc gttattccct ggcagtccgc agtgacgcca
      241 agcgacgcgt ccgccatttc gcgctcgatg cgcggcagct tggtcgaatc acgcagattc
      301 tccagcaact tcccgttcgc cgatacatac ggcgggacgc acgacgacaa cccgttggac
      361 gacgcaggat acggatacat cgtcgcagtc acgtcctgcc ctgccgcgcg cgccgaatct
      421 atcttcgcca gcagagccgg ctccttgtac cagtttttgg gaccagctgc cttgaggtgg
      481 tacagaatca ccggcacgcc gccctcgcgc ccgatccgca ttgcctcgtc ggtcgcttcc
      541 agaagcgaat catcctctga gcgcatgtgc gtgatgtatg ttccgtgaaa cggcgacatc
      601 gcgcgtgcga tctcgatcaa ttcaggcgta ccagcgtacg agcccggcgg atatatcagc
      661 gcacttgcaa caccgaacgc gccatcgcgc atcgcgtcgc gaacgactcg gcgcatggta
      721 tcgagctgcg ccgtcgatgg cgcgcccggc gccgcaccca ttgcgtacgt gcgcacggtc
      781 tcggcaccga gatatgagcc gacgttcacc gcaacaccgt ggtgctccat cgcatccagc
      841 catgcgctga atccgcgttc accggtgaag ccgtgcatcg cacgtatcat cgcagtgtcc
      901 gacggcgtcg ccgttgcaga gtccagagcc agtatcttgt cgttcgccgg cgccggcgtg
      961 ctgccttcgc ccagtatttc ggatgtgacg ccctgggtga tcttgcttat cgcacggccg
     1021 tccccgttca cgaatgcgtc agcggactga ccctgcatgt caatgaaccc cggcgtgact
     1081 acaagacctt ttgcatcgat gcgatgcgtc gctttcgccg agtcgagcgc gtgtggcggc
     1141 gctacggcgg cgatccggtc accgcggatc gctacatcag cgtaatacca cggattaccg
     1201 gtgccgtcca ccactcggcc gttggctatg acgacatcga atgggccgga gagatcggta
     1261 ggcgaagaag tgctaccggt gccagcctgg gtacagccgc caaggatgaa cactgtggca
     1321 agccacgcgg caccgccccg aattttctgc atttcacgcc ccatagaatg acgcgcaaaa
     1381 catagacgtc aattcgtgca ctgtgcaaga tgcagatggg gatttgaact cgtcattccc
     1441 gctttcgcgg gaatgacgag ttctaacgag ccggtttcac tttgtgaaac ctatttctct
     1501 ccgccgccat aaatcccgtt gaagagaaag cggaacgtcc cgtgcggctg cgcacggaag
     1561 gttatctccg ggccgaacag gaacagctgc ccctggccaa ctttcgcttc cgcgatcgcc
     1621 actgcaccgt cgagataatt ctgtccccac gcccagccac tgcgcagcgg atgatccgaa
     1681 tcgaaccacg cgaccggatg gacgcccttg agcgcagcat caggctcgag acggaacgcc
     1741 ggactgttgt cgaagaagac gtccacgcga g
//
LOCUS       DATIMD010000293         2371 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3287609, whole genome shotgun sequence.
ACCESSION   DATIMD010000293 DATIMD010000000
VERSION     DATIMD010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3287609"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..773
                     /locus_tag="VLI40_06730"
     CDS             <1..773
                     /locus_tag="VLI40_06730"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU96906.1"
                     /translation="SRLRAGTTTRSDVLRARVALAAARDALATAGSQKTASQFALART
                     IGSDVPVDAAPVADDDSLPLSVSRDSLVRNAVSGAPVARAATAAAQSADAAITAARAQ
                     YLPTVLASGGYGWMEQRSVDPRPVGGWTMQLGISYPLFNGFQRGATVTRAEAAATAAH
                     SAAVDTERGVRADAVKAYDDATVAAQRIGFAREAVDAAREDLRVQELRYRAGASTFLD
                     EVTSQLNLTQAETSLVQARYDYQIARATLERVLGRELR"
     gene            774..>2371
                     /locus_tag="VLI40_06735"
     CDS             774..>2371
                     /locus_tag="VLI40_06735"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSU96907.1"
                     /translation="MWIVKLALRRPYTFVVVSILIALFGVVSALKMPTDIFPEINIPL
                     VTVVWQYGGMPPEEMERRIVSPSERYYSATVGGIEHIESQSINGVGIIKVYFQPGTDI
                     PTALAEITSASQTAVKNLPPGIQPPIILRFNATDVPVLQIGVDSKTLSETQLYDLATN
                     TMRLQLATIQGVSMPAPYGGKARQIMVDLNPEAMYAKGVSPSDVSNAINAQNLILPSG
                     TAKFGSREYYIRLNSSPDVASMLNDMPIKTVHGTTVYIKDVAQVRDGYAVQTNLVREN
                     GHRGVYQSVVKNGNASTLDVVARIKAALPAVKAALPEGVSLNLMLDESLYVRASLHGV
                     LREAIIAGLLTAAMILLFLGSWRSTLVVATSIPLSILVSMICLAALGQSINVMTLGGF
                     ALAVGILVDDATVTIESIHRNLGTGKPLMRAILDGADEIAVPAFVSTLAICVVFTPVF
                     FLGGVTGALFQPLAMAVIFAMLASYVLSRTLVPLMVRYLLPAEVTMYAAHHGGEAVSD
                     VFWRVNRWFETHFDRMRAWYSNILA"
BASE COUNT          433 a          712 c          767 g          459 t
ORIGIN      
        1 acagccgatt gagagccggg acgacgacac ggtcggatgt gctccgggca cgagtcgcac
       61 tcgccgcggc gcgcgacgcg ctggcgacgg ccgggtcgca gaaaaccgcc agccagtttg
      121 cgttggctcg cacgatcggg agcgatgtac cggtagatgc cgccccggtg gccgatgacg
      181 attcgctgcc gctttccgtg tcgcgtgatt cgctggtgcg gaatgcggtg agtggggcac
      241 cggttgcgcg cgccgcgacg gccgcggcgc agtccgccga cgctgccatc acagcagcgc
      301 gcgcacagta tctgccgacg gttcttgcga gcggcggcta cggatggatg gagcaacgct
      361 cggtcgaccc gcgccccgtt ggtggatgga cgatgcaact gggaatttcc tatccgctgt
      421 tcaacgggtt tcagcgcggt gcaacagtga cgcgcgccga ggctgcagca accgcggcgc
      481 attcggccgc ggtcgacacc gagcgtggcg tgcgcgcgga cgcggtaaag gcgtacgatg
      541 atgcgaccgt cgcggcgcag agaatcggat tcgcgcgcga ggccgtagat gcggcgcgcg
      601 aagacctacg cgtgcaggag ctgcgctatc gggccggcgc gtccaccttt ctcgacgaag
      661 tgacatcgca gctcaacctc acgcaggcag agacttcact cgtgcaggca cggtacgatt
      721 accagatcgc gcgagccacg ctcgagcgcg tgcttggccg ggagctcaga tagatgtgga
      781 tcgtcaagct cgcactgcgc agaccgtaca cgttcgtcgt ggtctccata ctgatcgcac
      841 tgttcggagt cgtgtcggcg ctcaagatgc cgacggacat attccccgag atcaatatcc
      901 cgctggtgac agtggtctgg cagtacggtg gcatgccgcc ggaagagatg gagcgaagga
      961 tcgtctcacc gtccgagcgc tactacagcg ctaccgtcgg aggcatcgag cacatcgaat
     1021 cgcagtcgat caacggcgtt ggcatcatca aggtgtattt ccagcccggt actgacattc
     1081 caaccgcgct tgcggagata acgtcggctt cgcagactgc ggtcaagaat ctcccgcccg
     1141 gaattcagcc gccgatcatc ctgcgcttca atgcgaccga tgtcccggtg ctgcagatcg
     1201 gcgtcgacag caagactctg tcggagacgc agctttacga tctggcgacc aacacgatgc
     1261 gcctgcagct cgcgaccatt cagggagtct cgatgcccgc gccgtacggc ggcaaggcgc
     1321 gtcagatcat ggtcgacctg aatccggaag cgatgtacgc caagggcgta tcgccgtcgg
     1381 acgtcagcaa tgcgatcaac gcgcagaatc tcattctgcc gtcgggaacg gcgaagttcg
     1441 gcagccggga gtactacatc aggctcaatt cgagccccga cgtggcatcg atgctcaacg
     1501 acatgccgat caagaccgtt catggaacta cggtctacat caaggatgtc gcgcaggttc
     1561 gcgacggtta cgcggtgcag acgaatctgg tgcgagagaa cggtcatcgt ggcgtgtacc
     1621 agagcgtcgt gaagaatggc aacgcatcga cactggatgt cgtcgcacgc atcaaggcgg
     1681 cgctgcctgc ggtaaaggca gcgctcccgg aaggtgtctc tctcaacttg atgctggacg
     1741 agtcgctgta tgtgcgggcg tcgctccacg gcgtgctccg tgaggccatc atcgccggac
     1801 tgctgacggc tgcgatgatt ctgctctttc tcggtagctg gcgcagtaca ctggtcgttg
     1861 ccacgtcgat tccgctgtcc atcctggtct cgatgatatg cctcgccgca ctcggccaga
     1921 gcatcaacgt catgaccctg ggcggttttg cgcttgctgt tggaattctg gtagacgacg
     1981 cgaccgtcac tatagaaagc attcatcgaa atctgggaac tggcaagccg ctcatgcggg
     2041 cgattctgga cggtgcggat gagatcgcag tccccgcgtt cgtctcgacg ctcgcgatct
     2101 gtgtcgtgtt cacgcccgtg ttcttcctcg gcggcgtcac gggagcgttg tttcagccgc
     2161 ttgcgatggc cgtcatcttc gcaatgctcg cgtcgtacgt gttgtcgcgt acgctggttc
     2221 cgttgatggt gcggtatctg ctgccagccg aggtgacgat gtacgccgcg caccatggtg
     2281 gcgaggccgt atcggacgtc ttctggcgcg tgaaccgatg gttcgagacg catttcgatc
     2341 gcatgcgcgc gtggtacagc aacatacttg c
//
LOCUS       DATIMD010000294         1509 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_401243, whole genome shotgun sequence.
ACCESSION   DATIMD010000294 DATIMD010000000
VERSION     DATIMD010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401243"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1248
                     /locus_tag="VLI40_06740"
     CDS             <1..1248
                     /locus_tag="VLI40_06740"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HSU96908.1"
                     /translation="PYPDGNLHPRFFGWVKGNGTPLGMMADMLASGLNPHMAGFNQAP
                     ALVEQQLIDWLAELLGMPGASGVLVTGGTMASTLAIGVARFAKARELGIDVREDGVQI
                     WPDDVAHGPLVFYGSSETHGWARKAAEFMGLGNRAFRRVEVDADYTISMPALAEMVAA
                     DRAAGLIPFCVVGTAGTVNTGASDDLAAIAEFCRRENLWFHVDGAFGALAYLSDKLRP
                     QVAGIEQADSLGFDLHKWGDLPFECACVLVRDPEVHTATYAAPASYLAAATRGVIAGG
                     LPFADRGLDLTRGFKALKAWLSFKAEGVDKLVRMIEQNVAQTRHLVQRVDTEPDLELL
                     APAPLNIACIRYAPVDVENDRLDAMNTEILLRLQESGIAVPSSTIIDGKFAIRFANVN
                     HRSRLSDIDMVIDAILRIGRELR"
     gene            complement(1317..>1509)
                     /locus_tag="VLI40_06745"
     CDS             complement(1317..>1509)
                     /locus_tag="VLI40_06745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96909.1"
                     /translation="GDVWTVDIPMTEGRYIWLWRVDGKSPSDEAAIAATKAALTDGTA
                     LAGVRVVKPVKLLDDADAR"
BASE COUNT          272 a          453 c          474 g          310 t
ORIGIN      
        1 ccgtatcccg acggcaatct gcatccgcgc ttcttcggtt gggtcaaggg gaatggaacg
       61 ccgctcggca tgatggccga catgctcgca tccggactca atccgcacat ggcgggcttc
      121 aatcaggcac ccgcgctggt cgagcagcag ttgatcgact ggctcgcaga gttgctgggc
      181 atgcctggcg cgagcggagt gctcgtcaca ggcggcacca tggcgagcac gctcgcaatc
      241 ggcgtcgctc gcttcgccaa ggcgcgcgag ctcggcatcg atgtgcgcga ggatggcgtt
      301 cagatctggc ccgatgacgt cgcgcatggt ccactcgtgt tctacggatc ctccgagacg
      361 cacggttggg ctcgcaaggc tgcggaattc atgggactcg gcaatcgcgc atttcggcgc
      421 gtggaagtgg atgccgacta cacgataagt atgccggcgc ttgctgaaat ggttgctgca
      481 gatcgcgccg ccggattgat accgttctgc gtcgtgggca ccgctggtac ggtcaacacc
      541 ggcgcgtcgg atgatctcgc tgcgatcgca gaattttgcc ggcgtgagaa tctgtggttc
      601 cacgtcgatg gagcgttcgg cgcgcttgca tatctctccg ataagctgcg tccgcaggtt
      661 gccggcatcg agcaggccga ttcgctcggc ttcgatctgc acaagtgggg cgatctgccg
      721 ttcgagtgtg cgtgtgttct ggtacgtgat ccggaggtgc acacggcaac gtatgccgcg
      781 cctgcaagtt atctcgcagc cgcgacgcgt ggcgtgattg cgggagggtt gccgttcgcc
      841 gaccgtggcc tcgatctcac gcgcggcttc aaggcgctca aggcgtggtt gtcgttcaag
      901 gcagaaggag tggacaagct cgtccgcatg attgagcaga acgttgcgca gacgcgtcat
      961 ctggtccagc gcgtcgacac cgagccggat ctcgagcttc tcgcgccggc accgctcaac
     1021 atcgcgtgca tccggtacgc gcccgtggac gtcgagaatg acaggctgga tgcgatgaat
     1081 accgagatat tgctgcgtct tcaggagagc ggtatcgcag ttccgtccag tacgatcatc
     1141 gacggaaaat ttgcgattcg tttcgcgaac gtgaaccatc gctcgcgact gtcggacatc
     1201 gacatggtga tcgatgccat actgcgcatc ggccgcgaat tgagatagcc cgtcgttccc
     1261 gccttacggc gggaacgacg ggacagaatt atttacagat cgatctaccg cacgatctac
     1321 cgcgcgtccg cgtcgtcgag cagcttcacg ggtttcacaa cgcgaacgcc tgccagtgca
     1381 gtaccatccg tcagcgccgc tttggtagcc gcgatcgctg cttcgtccga cggactcttg
     1441 ccgtcaacac gccagagcca gatgtaacgg ccttcagtca tcggtatgtc caccgtccac
     1501 acatctccg
//
LOCUS       DATIMD010000295         2832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3578377, whole genome shotgun sequence.
ACCESSION   DATIMD010000295 DATIMD010000000
VERSION     DATIMD010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3578377"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..332)
                     /locus_tag="VLI40_06750"
     CDS             complement(<1..332)
                     /locus_tag="VLI40_06750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family peptidase"
                     /protein_id="HSU96910.1"
                     /translation="MSVRSIAALALLSSAVALPVSAQQSAPVLPYTPANAPRAIRRDI
                     PLTNMIRRAWEAGTRDSTGRPGRNYWQLWNDYTINARFDAPTATVSGSERVVIHNNSD
                     SAMHEIVLR"
     gene            complement(516..1064)
                     /locus_tag="VLI40_06755"
     CDS             complement(516..1064)
                     /locus_tag="VLI40_06755"
                     /inference="COORDINATES: protein motif:HMM:NF016130.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HSU96911.1"
                     /translation="MPNIQRIPRFHATIVVAGIIATVGCSASKADTPPASQQASTQGL
                     AAHAAATLAPGTPGTPVVVYKDAECGCCKAWVQHMKDNGFQVTAIDEPARVLDSIKTA
                     HGINDATASCHTAEVGKYVIEGHVPADLVKKLLTDKPADVVGLTVPGMVTGTPGMEGG
                     TPEHYTVLAMMRDGTTRPYAER"
     gene            complement(1064..1345)
                     /locus_tag="VLI40_06760"
     CDS             complement(1064..1345)
                     /locus_tag="VLI40_06760"
                     /inference="COORDINATES: protein motif:HMM:NF003817.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HSU96912.1"
                     /translation="MPATVTCVRCGQTREGFERAPFPGPIGARALGEICQVCWGDWLK
                     QQTMLINHYGLNVMDPQARQFITRNMEAFLFKRGESSDIDTSKQGTISH"
     gene            complement(1383..2171)
                     /locus_tag="VLI40_06765"
     CDS             complement(1383..2171)
                     /locus_tag="VLI40_06765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HSU96913.1"
                     /translation="MPHFAALATAWWKPVLFIIIAGHLTNVCVTIFLHRAQTHRGVKL
                     HYLAALPMRIWLWLSTAIVTKEWVACHRKHHAFADREGDPHSPLMEGLRNIVLKGAFY
                     YRKAVRQPGMLEKYGKGTPTDWLERHVFSKLNWVGILLMLGIDIWLFGFFVGPLVWGI
                     QMIWIPFWAAGIINGVGHAVGYRNFDVKDESRNISPIGIWLGGEELHNNHHADPHSAV
                     FSARWFEFDVGALYLRILSLFRLAEIKYARGMREHEPAEVRDAA"
     gene            2421..>2832
                     /locus_tag="VLI40_06770"
     CDS             2421..>2832
                     /locus_tag="VLI40_06770"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSU96914.1"
                     /translation="MGSALGAPTDEEDAAYDRALRRAIELGVNHVDTAINYRCQRSER
                     LIGRVLRDVGPGGGNNGGRIFVTTKGGYLPLEAPPPASKQEYRAYITREYLDTGIIDA
                     AELVAGGHCIAPKFLRNQVERSIANLGVASIDIYY"
BASE COUNT          515 a          860 c          895 g          562 t
ORIGIN      
        1 cgcagcacga tctcatgcat cgcggaatca ctgttgttat ggatcaccac tcgctcgctg
       61 ccgctcactg tcgccgtggg tgcatcgaag cgtgcattga ttgtgtagtc gttccacagt
      121 tgccagtaat tgcgcccggg acgtcctgtc gaatcgcgcg ttccagcttc ccacgctcgg
      181 cggatcatgt tggtgagcgg gatgtcccgt cgtatcgcgc gcggcgcgtt ggctggtgtg
      241 tacggaagaa ccggggcgga ttgttgcgcg gaaacgggca acgcgactgc gctggagagt
      301 agcgcgagcg cggcgatgga tcgaacggac atccagactc cttggcggga catgactgaa
      361 ataccacctt tggcgccgcc atgcgagcgg cgcggtggaa ctgtcgatgt ctggtatacg
      421 cgtatcggtg gcggaacgtc gtcatcccgc cgaaggctgg gaccattgcg gaggatcgga
      481 cgacgctgga agaagccgtc cagaccctgc cgcgactacc gctccgcgta cggccgcgtt
      541 gtcccgtctc gcatcatcgc caggaccgta tagtgctccg gcgttccgcc ttccatgcct
      601 ggtgtgcccg tcaccattcc cggcaccgtc agtcccacaa catcggctgg cttatcggtg
      661 aggagcttct tgaccaggtc cgctggtacg tgtccttcga tcacatactt gccgacttcg
      721 gcagtgtggc atgacgcggt ggcatcgttg attccgtgcg cggtcttgat cgagtcgagc
      781 actcgtgcgg gctcgtcgat cgctgtcacc tggaatccgt tgtccttcat gtgctgcacc
      841 cacgccttgc agcatccgca ttcggcgtcc ttgtaaacga ccaccggcgt gcctggcgta
      901 ccgggtgcga gcgtcgccgc tgcgtgcgcg gcgagtccct gggtcgaagc ctgctggctt
      961 gcgggcggcg tgtcggcctt gctggcggag cagccgaccg tggcgatgat tccagctacg
     1021 acgatcgtgg cgtggaaccg tggtatgcgc tggatgttcg gcatcagtgg cttatcgtcc
     1081 cctgcttgct cgtgtcgatg tcgctcgact cgccacgctt gaagaggaac gcttccatgt
     1141 tgcgcgtgat gaactggcgc gcctgcgggt ccatcacgtt caagccgtag tggttgatca
     1201 gcatcgtctg ctgcttgagc cagtcgcccc agcagacctg gcagatctcg ccgagggcgc
     1261 gcgctccgat cggaccgggg aatggcgcac gctcgaatcc ctcgcgcgtc tgaccgcagc
     1321 gcacacacgt tactgttgct ggcattcttt catgaaatgt ttcgggttat gcgcagcgcg
     1381 cgttacgcgg cgtcacgcac ttccgccggc tcgtgctccc gcattccgcg cgcgtacttg
     1441 atctccgcga gacggaagag cgagaggatg cggaggtaca gtgcaccgac gtcgaactcg
     1501 aaccagcgcg ccgagaagac tgcgctgtgc ggatctgcgt ggtgattgtt gtgcagctcc
     1561 tcgccaccga gccagatgcc gatgggcgag atgttgcgac tctcgtcctt cacgtcgaag
     1621 ttgcggtagc cgactgcgtg accgacgccg ttgatgatgc cagctgccca gaacggaatc
     1681 cagatcatct gaatgcccca cacgagcggt ccgacgaaga atccgaacag ccagatgtcg
     1741 atgcccagca tgagcagaat tccgacccag ttgagcttcg agaatacgtg acgctcgagc
     1801 cagtcggtcg gagttccctt gccgtatttc tccagcatgc ccggctggcg gaccgccttg
     1861 cgatagtaga aggcgccctt gagcacgatg ttgcggagcc cttccatcag cggcgagtgc
     1921 ggatcaccct cacggtccgc gaacgcatgg tgcttgcggt ggcaggccac ccattccttg
     1981 gtgacgatgg ccgtcgacag ccacagccag atgcgcatcg gcagcgcggc cagatagtga
     2041 agcttcacgc cgcggtgagt ctgggcgcga tgcaggaaga tcgtcacgca gacgttggtg
     2101 aggtgtccag cgatgatgat gaaaagaacc ggcttccacc aggcggtggc gagagctgcg
     2161 aaatggggca ttatggggtc aatctccgtg atctgtagca gactcgtaat ctataaagag
     2221 gcgagaatcc gggtatcggg aaaaatccta ccgaacgatc gttcgagcaa tcgttcgaat
     2281 agtcgtcgac cgagtggacg gatcaaaccg gccccgggac ttgcgatggc gccccttggc
     2341 cggcatcatc ccgcgacatg ccaagcgcta cacattccga atctcagctg aatcctccgc
     2401 ccccattttc cgtactcgga atgggatcgg cactgggcgc tccgacagat gaggaagacg
     2461 cggcttacga tcgcgccctt cggcgggcga tcgagctggg cgtgaatcac gtggatacgg
     2521 cgatcaacta tcgctgtcag agatccgagc gcctgatcgg acgagtgctg cgcgacgtcg
     2581 gccccggagg cggcaacaac ggtggcagga tcttcgtgac taccaagggc ggctatctgc
     2641 cgctcgaggc gccgccgccc gcaagcaagc aggagtaccg tgcgtacatc acgcgtgaat
     2701 atctcgatac ggggatcatc gatgcagccg agctggtcgc tggcggacac tgcatcgcgc
     2761 cgaaattcct gcgcaatcag gtcgagcgca gcatcgcgaa cctcggcgtc gcttccatcg
     2821 acatctacta ca
//
LOCUS       DATIMD010000296         2538 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_402777, whole genome shotgun sequence.
ACCESSION   DATIMD010000296 DATIMD010000000
VERSION     DATIMD010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402777"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..360)
                     /locus_tag="VLI40_06775"
     CDS             complement(<1..360)
                     /locus_tag="VLI40_06775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96915.1"
                     /translation="MGATKKSGGHQKGAQDHAESQHGDKTREQIAKAWNNPGSNVTAG
                     GANVAVGDEANDSGPQDRPAVTRAHSPPSGSHLFSDRTQHDEADLNSEKTRQVRDAER
                     HGHIADDEWSKRSARASA"
     gene            complement(430..>2538)
                     /locus_tag="VLI40_06780"
     CDS             complement(430..>2538)
                     /locus_tag="VLI40_06780"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MDR family MFS transporter"
                     /protein_id="HSU96916.1"
                     /translation="QSHTRRAGSAHGFLTVTDVALEPQAQPQAPAYLDHRQVLVAFSG
                     LVLVMLLAALDSTIVSTALPTIVSDLGGLEHLAWVVTGYLLAQTVVTPIYGKIGDLYG
                     RKIVLQSAIVLFLIGSALCGLATSMTQLILFRAVQGLGGGGLNVTTQAVVGDIVAPRE
                     RGRYQGIFGAVFGLASIAGPLLGGYFTTHLSWRWIFYVNIPLGIIALVVLAATLPGTV
                     QRVRHAIDYSGAALLAIALSATTLVADLGGTAYAWSSAMMIGIIAVGLLSLVLFLLAE
                     SRAAEPVLPLHLFSQRTFVVSTTVGLIIGFALFGSVTYFPLFLQVVKGVSPTRSGMQM
                     LPMMVGMLVTSIVSGQLISRTGRYKIFPIVGTAVTTVGLYLLARLSATSGALTVSAYM
                     LILGVGLGLVMQVLVIAVQNDVDYSDLGVATSGTTLFRLVGGSLGTAVLGAIFASRLD
                     ANLARLLPAGAAASGAAAHGISADALAHLPAATRALYGAAFTDALNTVFVVAAVVSVV
                     GFILSLLLPERPLRAAVATVAEEAGNSSGETFGRLSGPAAAVRQLHAALVTLADRDVQ
                     REHIELIVQRAGETLSALAAWMLVRMQSAPFHEVATLARTHGVAQERIDAAIAELRAR
                     GLIATAEDVTAREPQFTLTDAGCDVLDRLTAARRAHFEELSADWDPEHDRDMAAYLRN
                     VVRELVPTVQRPANPAPPGR"
BASE COUNT          474 a          853 c          763 g          448 t
ORIGIN      
        1 cgcgctcgct cgcgcacttc gcttggacca ttcatcatcc gctatgtgtc catgccgctc
       61 tgcgtcgcgc acctgacgtg tcttctcgct gttgaggtcc gcttcatcgt gttgcgttcg
      121 atcactgaac aggtggctgc cggatggcgg tgagtgcgcg cgcgtcaccg ccggacggtc
      181 ctgaggtcca ctgtcgtttg cttcatcgcc cacggcgacg tttgcgccgc cggctgtcac
      241 gttcgacccc ggattattcc acgccttcgc tatctgctca cgcgtcttgt cgccgtgctg
      301 gctctctgca tgatcctgcg cgcccttttg atggccgcct gattttttcg ttgctcccat
      361 gtgttgcctc ctgatgtatc cgaccgtaca cggaaggggt cgcaatgcct gtgccggtca
      421 tggcaggcgt taccgacccg gcggggccgg atttgcggga cgttgcaccg tgggaaccag
      481 ctcccggacg acattgcgca gataggcggc catgtcccga tcgtgctcgg gatcccagtc
      541 cgctgacagc tcttcgaaat gcgcacgacg cgcggccgtc aggcgatcca gcacatcaca
      601 tcctgcgtcc gtcagcgtga actgcggctc gcgcgcggtc acgtcttccg cagtcgcgat
      661 caatccgcgg gcgcgcagct ccgcaatcgc agcgtcgatt ctctcctgtg cgacaccgtg
      721 cgtacgagca agcgtcgcga cctcatgaaa cggagcactc tgcatccgca ctagcatcca
      781 ggcggcgagc gcgctcaacg tttctccggc acgctggacg atcagctcga tgtgctcacg
      841 ctgaacgtca cgatccgcca gtgtaacaag cgcggcgtgc agctgccgaa ccgcagccgc
      901 gggaccggaa agtcggccaa aagtttcgcc gctgctgttc cctgcctctt ctgcaacggt
      961 tgccacagcg gcacgcagcg gacgctccgg aagcagcaag ctcaatatga atccaaccac
     1021 actcaccact gcggcaacga cgaacactgt attcagcgca tccgtgaacg ccgctccgta
     1081 aagcgcgcgc gttgcagccg gaagatgtgc gagcgcgtcg gcgctgattc cgtgcgcggc
     1141 ggcgccgctt gccgccgcgc cggccggaag caaccgcgcc aggttcgcgt cgaggcggct
     1201 cgcgaagatc gcgcccagca ccgctgtgcc gagcgacccg ccaaccaatc gaaacagtgt
     1261 cgttccggat gtcgcaactc caaggtcgct gtagtcgacg tcattctgca ccgcgatcac
     1321 gagcacctgc atcacgagtc cgagacccac gccgagtatc agcatgtacg cagagaccgt
     1381 cagcgcacca ctcgtcgcgg acagacgcgc gagaaggtac agaccaactg tcgtgacggc
     1441 ggttccgacg atcgggaata tcttgtagcg ccctgtacgg ctgatcaact gacccgacac
     1501 gatcgatgtc acgagcatgc cgaccatcat cgggagcatc tgcatgccgg agcgtgttgg
     1561 actcacgccc ttcaccacct gcagaaagag cgggaagtag gtgaccgacc cgaacaacgc
     1621 gaatccgatg atgagtccca ccgtcgtcga taccacgaac gtgcgctggc tgaagagatg
     1681 cagcggtagc accggctcgg cggccctgct ctccgccagc aggaagagca cgagcgagag
     1741 caatccaacc gcaatgatcc cgatcatcat tgccgagctc catgcgtatg cagtgccacc
     1801 caggtccgcg accagtgtag tcgcgctgag cgcgatcgcg aggagcgcgg cgccactgta
     1861 gtcgatcgca tgccgcacgc gctgcaccgt tcccggcagc gtagccgcaa gcacgacgag
     1921 cgcgatgatc ccgagcggga tgttcacgta gaagatccac cgccacgaga gatgcgtcgt
     1981 gaagtatccg cccagcagcg ggcccgcgat gctcgcgagt ccgaagaccg cgccaaagat
     2041 tccctgatag cgtccacgct cgcgcggcgc gacgatatcg ccgacgactg cctgcgtcgt
     2101 gacgttgagc ccgccgccac cgagtccctg caccgcgcga aacagaatca gctgcgtcat
     2161 gctcgtcgcc agtccgcaca gcgccgatcc aatgagaaac agcacgatcg ccgattgcag
     2221 cacgatcttg cgtccataca ggtcgcctat cttgccgtaa atcggagtga cgacggtctg
     2281 cgcgaggagg tagcccgtga ccacccacgc gagatgctcg agcccgccga ggtcgcttac
     2341 gatcgttggg agcgcggtcg atacgatggt ggagtccagc gcggcaagca gcatcaccag
     2401 cacgagtccg ctgaatgcta caagtacttg gcggtggtcc agatatgcag gcgcctgcgg
     2461 ctgagcctgt ggctcgagcg cgacgtccgt caccgtcagg aatccgtgcg cgcttccagc
     2521 tcggcgcgtg tgcgattg
//
LOCUS       DATIMD010000297         2980 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4155021, whole genome shotgun sequence.
ACCESSION   DATIMD010000297 DATIMD010000000
VERSION     DATIMD010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2980
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4155021"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..848
                     /locus_tag="VLI40_06785"
     CDS             <1..848
                     /locus_tag="VLI40_06785"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSU96917.1"
                     /translation="MALIDPGDEVIILEPFYENYGPDAELAGAKPVFVPLIAPDWHLD
                     LEGLAASIAPRTRAIVLNTPHNPTGKVFSRAEISAIAELAQRHNLLVFTDEIYEHLVY
                     AGHHHPIATWPGMRERTVTISGLSKTFSCTGWRLGYAIAPRELTNAIRKVHDFLTVGA
                     SAPLQAAGAVGMAFDADYYNHLQRAYKQRRDVMMTALLKAGFSCGVPEGAYYVLADFS
                     AIDKGRSDRDFAVWLAETIGVATVPGTSFYGDPERGTSAVRFAFCKTFETLGRAAERL
                     DQLSR"
     gene            940..1965
                     /gene="ruvB"
                     /locus_tag="VLI40_06790"
     CDS             940..1965
                     /gene="ruvB"
                     /locus_tag="VLI40_06790"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HSU96918.1"
                     /translation="MSRAEITTPEVIADESVVELSLRPQKLAEFIGQPKVKESLRIYI
                     DAALARREPLDHTLFFGPPGLGKTTLAELIARELGVNIHSTSGPALEKPGDLVGTLTN
                     MRAGDILFIDEIHRLRPVIEEFLYPAMEDYRIDIRLSEGPKAQTITMPIERFTLIGAT
                     TRLGMLTAPLRARFGIEQRLNYYPVDALELIVRRTAEVLKTEIDEHGTHEIARRSRGT
                     PRVANRLLRRVRDYAQVRADGIITLPVADEALQMLDVDQFGLDDMDSRILKTIIEKFE
                     GGPVGITTIGAAVGEDAGTIEEVYEPFLVQNGFLQRTPRGRVATPQAYRHFGYTPPAQ
                     AQQTSLL"
     gene            2230..>2980
                     /locus_tag="VLI40_06795"
     CDS             2230..>2980
                     /locus_tag="VLI40_06795"
                     /inference="COORDINATES: protein motif:HMM:NF014592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HSU96919.1"
                     /translation="MHGTRTSDYDFQLPPELIAQSPPPVRGESRLMVVDRATQTIAHR
                     RFADIVEYIPAGDVLIRNTTRVMRARLLGTRDSGAPAEILLLKSLGDSRYEAMVRPGG
                     KVKPGRTIHIGDQLDVRVLETTERRTRVVELVTPLADSDAIERYGHIPLPPYITRADT
                     PPDAERYQTVYAAKTGSAAAPTAGLHFTPEILDELRTHGVEIADVILHVGAGTFKPVE
                     VEDPAQHVMHEEWYEVPAVTAARIAQARARGA"
BASE COUNT          604 a          940 c          886 g          550 t
ORIGIN      
        1 tcatggcgct catcgatccc ggcgacgagg tgatcatact cgagccgttc tatgagaatt
       61 atggccccga tgcagagctc gccggcgcaa agccggtctt cgtcccgctg atcgcgccgg
      121 actggcatct ggacctcgaa ggcctcgcgg cgtcgatcgc tccacgcacg cgtgcaatcg
      181 tactaaatac accgcacaat cccaccggaa aggttttctc ccgagcagag atctcggcca
      241 tagccgagct cgcgcagcga cacaatcttc tggtgttcac ggatgagatc tacgagcatc
      301 tcgtctatgc cggacaccat catccgatcg cgacgtggcc gggaatgcgt gagcgtacag
      361 tcacgatttc gggactgtcc aagacgttct cgtgcacggg ctggcggctc ggctacgcca
      421 tcgctccgcg cgagcttacc aacgcgatcc ggaaggttca cgactttctc accgtcggcg
      481 cgtcggcgcc gctgcaggcc gccggtgccg tgggaatggc gttcgatgcg gattattaca
      541 accacctgca gcgtgcttac aagcagcgtc gcgacgttat gatgaccgcc ctcctgaagg
      601 ccggattctc ctgcggagtt ccggaaggcg cgtattatgt gctcgccgat ttcagcgcga
      661 tagacaaggg ccgcagtgat cgcgactttg ccgtatggct cgccgaaacg atcggagtcg
      721 cgaccgtacc gggcaccagc ttctacggcg atccggagcg aggaacgtct gccgtccgtt
      781 tcgcattctg caagaccttc gagacgctcg gccgtgcggc ggaacgactg gaccagctca
      841 gccgctgacc ggccgttagt tgacagagtc aaccttgttt tcggtgtatc ttcggggtat
      901 ttttgagcta tgccggaagt agctttggac acccaatcca tgtcccgcgc cgagatcacc
      961 acaccggaag tcatcgctga cgaatcggtg gtggagcttt cgctccgacc gcagaagctt
     1021 gccgagttca tcggccagcc caaggtcaag gagtcgctcc gcatctacat cgatgcggcg
     1081 ctcgcgcggc gcgagccgct ggaccacaca ctctttttcg gaccgcccgg gcttggcaag
     1141 acgacgctgg cggagctgat cgcacgcgag ctgggcgtga acatccactc gacatcggga
     1201 ccagcgctgg aaaagcctgg cgatctcgtg ggcacgctca ccaacatgcg cgccggcgac
     1261 attctcttca tcgacgagat tcatcgtctg cgtccggtga tcgaggagtt cctgtatcca
     1321 gcgatggagg attacaggat cgacatcagg ttgtctgaag gcccaaaggc gcagaccatc
     1381 acgatgccga tcgagcgctt cacgctcatc ggcgcgacca cgcggctcgg gatgctcacg
     1441 gcaccgctcc gcgcgcgatt cgggatcgag cagcggctca actactaccc ggtggacgcg
     1501 cttgagctga tagttcgtcg caccgccgaa gtgttgaaga ccgagatcga cgagcatggc
     1561 acgcacgaga tcgcgcgtcg ctcacgcgga acaccgcgcg tcgcgaaccg gttgctgcgc
     1621 agggtgcgcg actatgcaca ggtgcgcgcc gacggaatca tcacgcttcc tgtcgccgat
     1681 gaggcgctgc agatgctcga cgtcgatcag ttcggactgg acgacatgga ctcgcgcatt
     1741 ctcaagacca tcatcgagaa attcgagggt ggcccggtcg gcataacgac cattggtgca
     1801 gcggtcggcg aggatgctgg aacgatcgag gaagtgtacg agccgttcct cgtgcagaat
     1861 ggatttctgc aacgcacacc gcgcggacga gtcgcgacgc cgcaggcata ccggcacttc
     1921 gggtatacac caccagcaca agcacagcaa accagcttgc tctagcagag tgcatgaatg
     1981 caaagaagct ccgaggaatt cctcggagct tctttgttgc agtgttgcca ctgccacggg
     2041 ccgttgccaa cgtcattgta aatatagggt cacctaaagc cgtagtcaat caaccagccc
     2101 gtgccaggga cgagactcga actcgcacgg cctttcggcc aggacgttgg cggtgacctg
     2161 atacagacag atcgatcgtc ggcgagtagc accgccacag caggattatc attatcctgc
     2221 acaagaccca tgcacggaac ccgaacctcc gactacgact tccagcttcc accggagctg
     2281 attgcgcaat cgccgccacc tgtgcgcggt gagagtcggc tcatggtcgt cgatcgcgca
     2341 actcagacaa ttgcgcaccg gcgtttcgcg gacatcgtcg agtacattcc cgccggcgac
     2401 gtgctgatcc gcaatacgac gcgcgtcatg cgcgctcgcc tgctcggcac acgagattcc
     2461 ggtgcgcctg ccgagatatt gctgctcaag tcgctcggcg attcacgcta tgaggcgatg
     2521 gtgcggcccg gtggaaaggt gaagcccggc cgcacgattc acatcggtga tcaactcgac
     2581 gttcgtgttc tcgaaacgac cgagcggcgc actcgcgtcg tcgagcttgt aactccgctc
     2641 gccgattcgg acgcgatcga gcgctacgga cacatcccgc ttccaccgta catcacccgc
     2701 gcagacactc cgccagacgc ggagcgttac cagactgtgt atgccgccaa aaccggatcg
     2761 gccgcggctc caactgcagg actgcacttc actccggaga tactcgacga gttgcggaca
     2821 cacggcgtcg aaatcgccga cgtgattctc catgtcggcg ccggaacgtt caagccggtc
     2881 gaggtcgaag atcccgcgca acacgtgatg cacgaggaat ggtacgaagt tcccgcggtc
     2941 actgcggcac gcattgcaca agcgcgtgcg cgcggcgcga
//
LOCUS       DATIMD010000298         2499 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2422314, whole genome shotgun sequence.
ACCESSION   DATIMD010000298 DATIMD010000000
VERSION     DATIMD010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2499
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2422314"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VLI40_06800"
     CDS             complement(<1..198)
                     /locus_tag="VLI40_06800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96920.1"
                     /translation="MESAAQTRAPNKMGRIPVLEYHLISDHDALYSRTREHFRADLED
                     VYRRGYRPVTLAQVLDKNFTDV"
     gene            266..2467
                     /locus_tag="VLI40_06805"
     CDS             266..2467
                     /locus_tag="VLI40_06805"
                     /inference="COORDINATES: protein motif:HMM:TIGR02074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HSU96921.1"
                     /translation="MLRRDATEAPAIAAPATVAARTTAQATANGRYILIMDLRFGKIG
                     KRQYITAAIAVLIVAIYGCDAWLATCGGEGCPSAADIRSFHPDEGGRVLDREGNFISR
                     LAVVRRVNVPLSAVPVPVRQAFVATEDRRFYEHHGIDWHALARATLRNIRAGGVREGF
                     STITMQVVRNTFAVRRYSGRSFRQKLLEMRLSRLLERNLTKNQILELYLNVIYLGNGV
                     YGVEAASRDLFGKSVGDLTVPEGAMLAALPKGPSAYTPRRSPRRALARRNLVLGLMAN
                     QGYISAAADSQYVKSPLRVAKNEWRPDMSGDSYAIDAVRDVVDSVLKGGSRDVNDLTV
                     YTTLDERAQVAADRAVRRQAAVIQQESDRRGPHVEGAMVALDPRTGDIRALVGGRTFE
                     RGGFDRALLAHRQPGSAFKPFVYATALAAGYTPASEVEDAPISVKVGNTIWSPKNDGG
                     EYGGHVTFRRALMRSENTAAVRVSQLVGIPAILETAHRFGIRSDLPNVPSAALGALEV
                     TPMELATAYAPFANGGFRVTPRLVRRIQSADGQILWSSDNQRVRVMKPEDAYQITSML
                     QSVVNYGTGYVIRDLGVEGLVGGKTGTTNDGTDVWFMGFTPTIVAGFWFGYDTPRPIG
                     YNASGGRLAAPAWADFYTNGWDEPDPPNAWAPPPGMVPATIDARTGYLATEWCPITQR
                     EYFKPGTLPTTPCPVHSGPPEIQLDSTLIQIPNAVEKIGKGIGGLLHKIFH"
BASE COUNT          489 a          780 c          774 g          456 t
ORIGIN      
        1 gacatcagtg aaattcttgt ccagcacctg cgccaacgtc accggccggt atccgcgtcg
       61 ataaacatcc tcgagatctg cccgaaaatg ctcgcgagtt ctgctgtata gagcgtcgtg
      121 atcgctgatc agatgatatt ccaggacggg gatccgtccc atcttgttcg gcgcgcgcgt
      181 ctgcgctgcc gattccaccg gagacgcgcc cggcttcgcc ggaacgaccg gagcggggtg
      241 tttcggggta ttgtgtgaag gcctcgtgct ccggcgtgac gcgaccgaag cgcctgcgat
      301 cgcggctccg gcaacggtgg ctgcaaggac gactgcacag gcaactgcta atgggcgata
      361 cattctgatc atggatctac ggttcggcaa aatcgggaag aggcaatata taacggctgc
      421 tatcgcggta ctcatcgtcg cgatctacgg ttgcgacgca tggcttgcga catgtggcgg
      481 cgagggatgt cccagcgccg ccgacatccg gtcatttcat ccggacgaag gcggacgagt
      541 actggaccgt gaaggaaact tcataagcag actcgccgtc gtgcgccgcg tcaacgtacc
      601 gctgagcgcg gttccggttc ccgtgcgtca ggccttcgtc gccacagaag atcgccgctt
      661 ctacgagcac cacggaatcg actggcacgc gctcgcgcgc gcgacgcttc ggaacatccg
      721 ggccggcggt gtgcgcgagg gcttctccac gatcaccatg caggtcgtgc gcaatacctt
      781 cgccgttcgg cgatacagcg ggcgctcgtt ccgtcagaag ctgctcgaga tgcgcctttc
      841 ccggctgctc gagcgcaatc tcaccaagaa ccagatactg gagctgtatc tcaacgtcat
      901 ctacctgggc aacggcgttt acggcgtcga ggccgcgagc cgggatcttt tcggcaagag
      961 cgtcggcgat ctcacagtcc ccgagggagc gatgctggcg gcgctcccca agggtccatc
     1021 ggcgtacact ccgcgccgtt cgccgcgcag ggcacttgcg cgccgcaacc tcgtgctcgg
     1081 attgatggcg aatcagggat acatatcagc tgcagcggac agtcaatacg tgaaatctcc
     1141 acttcgtgtc gcgaagaacg agtggcgacc cgacatgtcg ggtgactctt acgcgatcga
     1201 tgcggtgcgc gacgtggtgg attccgtgct caagggtggc tcgcgtgacg tgaatgatct
     1261 caccgtgtac acgacgctgg acgagcgcgc gcaggtcgct gcggatcgtg cagtcagacg
     1321 ccaggccgcc gtgattcagc aggagtccga tcgtcgcggt ccgcacgtcg agggagcaat
     1381 ggtcgcgctc gatccccgca ccggtgatat tcgcgcgctc gtcggcggac gtacattcga
     1441 gcgtggcggc tttgatcgcg cactgcttgc acaccgccaa cccggctccg cgttcaaacc
     1501 attcgtgtac gctaccgcac tcgctgctgg atacacaccg gcgagcgaag tggaagacgc
     1561 gccaatctcc gtcaaggtcg gtaacacgat ctggtcgcca aagaacgacg gcggagaata
     1621 tggtggccat gtgacgttcc gtcgcgcact catgcgctcc gaaaataccg cggccgttcg
     1681 cgtcagccag ctggtcggca ttccggcgat actcgagacc gcgcaccgct tcggcatccg
     1741 cagcgatctg cccaacgtac catctgccgc actcggcgcg ctcgaagtca cgccgatgga
     1801 actcgccacc gcatacgcgc cgttcgcgaa cggaggcttt cgcgttacac cgcgactcgt
     1861 gcgccgcatt cagagcgccg acggacagat cctctggagc agcgacaacc agcgagtacg
     1921 cgtcatgaaa cccgaggacg catatcagat cacgtcgatg cttcagtcgg tcgtcaacta
     1981 cggcaccggc tacgtgatcc gcgaccttgg cgtcgaagga ctcgtgggag gaaagaccgg
     2041 tacgacgaac gacggcaccg acgtctggtt catgggcttc acgccgacga tcgtcgcggg
     2101 cttctggttc ggttacgaca cgccgcgacc gatcgggtac aatgcgtcag gcggtcgcct
     2161 cgcagcgccg gcatgggcgg atttctatac taacggatgg gacgagcccg atccccctaa
     2221 cgcctgggcg ccgcccccag gaatggttcc agcgacgatc gatgcgcgaa ctggatatct
     2281 ggcgaccgaa tggtgtccga tcacgcagcg cgagtatttc aagccgggaa cgttaccgac
     2341 gactccatgt ccggtgcact cgggtccgcc ggagatccag ctcgacagca cgttgataca
     2401 gataccgaac gcagtggaga agatcgggaa ggggatcggc gggctgctgc acaagatatt
     2461 tcactgacag cgatctccat ccactcagcg cggatttaa
//
LOCUS       DATIMD010000299         3413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5315147, whole genome shotgun sequence.
ACCESSION   DATIMD010000299 DATIMD010000000
VERSION     DATIMD010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5315147"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..300)
                     /locus_tag="VLI40_06810"
     CDS             complement(<1..300)
                     /locus_tag="VLI40_06810"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSU96922.1"
                     /translation="MSDAAFISRADVDAAAARLEGQAVRTPVISALDLAERLGVACGV
                     KAESFQRTGSFKFRGAYNYIATMDPAMRSRGVVAPSSGNHGQAVACVAAIFGVPAT"
     gene            complement(357..749)
                     /locus_tag="VLI40_06815"
     CDS             complement(357..749)
                     /locus_tag="VLI40_06815"
                     /inference="COORDINATES: protein motif:HMM:TIGR00004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019239 - deaminase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rid family detoxifying hydrolase"
                     /protein_id="HSU96923.1"
                     /translation="MNFISTPNAPTPAGHYSQGVVHGGFIFVAGQLPIDPRDPSRAPG
                     TIEEQTTQALANVAAILGAAGTGLDRVVQMTVYVADVSLWGKVNAVYARVMGSHRPAR
                     AVVPSGELRHGMLIEIQAIAAVGPDAAE"
     gene            complement(771..1433)
                     /locus_tag="VLI40_06820"
     CDS             complement(771..1433)
                     /locus_tag="VLI40_06820"
                     /inference="COORDINATES: protein motif:HMM:NF024587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidylate kinase-like family protein"
                     /protein_id="HSU96924.1"
                     /translation="MQTTAVDLVTVSREYGAGGSDFALALGAALGWPVLDKDIVDRVA
                     ARLHLQCGAVKQRDEQTPGLFARITSTLLISPPESPMQLETSDLLMPDSIAQAAHAEI
                     VEAAAHPPIVIVGHGAQMIFQRRPGTIHVRLIGTPESRIERILARDGGTAEQAAADAR
                     RINSQRQAYVQRYYHQYWGDPLLFDIQFNTARVTIEDAVTCVASIVTARGHASPAHAL
                     SS"
     gene            1598..2410
                     /locus_tag="VLI40_06825"
     CDS             1598..2410
                     /locus_tag="VLI40_06825"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HSU96925.1"
                     /translation="MRTTSLVVSLAGTALLAGCAVSTQQEVQMGQQEAQQVSTQLPML
                     QDAQVNAYVNDLGNEIAKRTSRADLDWHFAVVNTDVVNAFALPGGFIYVNRGVLEHAS
                     TMDELAGVLGHEIEHVVLRHSVKQMQQEQGANVGLAIACTLTNVCNNQAAATAINLGG
                     TAVFAKFSREDEVQADDGGFQNVMRAGISPEGMLTFFQKLLAEEQAQGGSGTTAPWFA
                     DHPGTEDRIADIKRMLAKVPASQLAKLQTDSPAFQSMKRRLAQLPAAPPSKQ"
     gene            2464..3147
                     /locus_tag="VLI40_06830"
     CDS             2464..3147
                     /locus_tag="VLI40_06830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96926.1"
                     /translation="MPQRAPRILLLAGSVLLLPISRAVSQQSMHGDQTSARALTDTTR
                     ADSSKPAAMTFAQKAAYYSDRTFSIRTILGASYAAGIAQWRGTPREWGAGISGYGRRD
                     AAAYGGSVIRHTVEFGVGALFHEDPRFEPSTRNGFASRTEDALHNTIFVRTDDGSHRI
                     AWSRAAAALATGFAVNSWEPRRLHSTHHAIMLSLAGALGYATGHVTQEFTPDIKRFLL
                     RETPLGGRR"
BASE COUNT          669 a         1072 c         1037 g          635 t
ORIGIN      
        1 ggtggccgga acaccgaata tcgccgcgac gcatgcaacg gcctgtccgt gatttcccga
       61 tgacggcgcg accaccccgc gcgaccgcat ggccggatcc atcgtcgcga tgtagttgta
      121 ggcgccacga aacttgaacg aacctgtgcg ttggaacgac tcggctttca cgccgcacgc
      181 gactcccagg cgttcggcga gatcgagcgc cgaaattacc ggcgtacgga ccgcctgacc
      241 ctccagtctc gccgcagcgg catcgacatc tgcgcgagag atgaacgccg cgtcgctcac
      301 gtgtgcactt gcttatgcac ctgcttacgc acctgcttat tcacttgctt acgcgctcac
      361 tctgcggcgt ccggaccgac tgccgcgatc gcctggatct cgatcaacat gccgtgccgc
      421 aattccccgc ttggcacgac agcacgcgca ggacgatggc tgcccatgac gcgcgcgtaa
      481 acggcgttca cctttcccca gagcgagacg tccgccacat acaccgtcat ctgcacgaca
      541 cgatcgagtc ccgttcccgc ggcacccaga atcgcagcga cgttggcgag tgcctgcgtc
      601 gtctgctctt cgatagtgcc cggtgcacgt gaaggatccc tgggatcgat cggaagctga
      661 ccggctacga atatgaaccc gccatgcacg actccctgcg agtaatgtcc ggcgggtgtc
      721 ggagcgttcg gtgtggagat gaaattcatg tcgacggtga ttggaaatag tcagctgctc
      781 aaggcatgtg cagggctcgc gtgcccgcgc gccgtgacga tcgatgcaac gcacgttacc
      841 gcgtcctcga tcgtaacacg cgccgtgttg aactgaatgt cgaagagcag cgggtcgccc
      901 cagtactgat gataatagcg ctggacgtag gcctgtcgct ggctgttgat gcgccgcgcg
      961 tcggcagcgg cttgctcggc cgtgccgccg tcgcgcgcga ggatcctctc tatgcgggat
     1021 tccggcgtcc cgatcaatct cacgtggatc gttccgggtc gccgctggaa gatcatctgg
     1081 gcgccgtgcc ccacgatgac gatgggcgga tgggcggcgg cttccacaat ttcggcgtga
     1141 gcggcctgtg cgatcgagtc cggcatcagg agatcgctgg tctcgagctg catcggcgac
     1201 tcgggcggcg atatgagaag tgtcgaggtg attctcgcga acaggcccgg ggtctgttca
     1261 tcccgttgct tcaccgcgcc gcactgcagg tgcagccttg cggctacgcg atcgacgatg
     1321 tccttgtcca gcaccggcca gcctagcgcc gcgcccagag caagtgcaaa atcgcttccg
     1381 ccagccccat actcccgcga cacggtgacg agatccacag cggtcgtctg cattcggtaa
     1441 ccctccggtt ggacgcgctc tgatgcgaac ttatctgcga gaaccctgcc gggcaacgcc
     1501 gtgcgcggtc ggaggagtgg tccggatcgt gcctttccta tggtcgcgga gcaacatctc
     1561 actttcagag ggcacgatgg atcgccccgg gggcaaaatg cgaaccactt cactggttgt
     1621 ttcacttgcc ggcactgctc tgctcgcggg gtgcgcggtg tccacgcagc aggaagtcca
     1681 gatgggccag caggaagccc agcaagtctc cactcagctc ccgatgcttc aggacgcgca
     1741 ggtcaatgca tacgtgaacg acctcgggaa cgagattgcg aagcgtacgt cccgcgcaga
     1801 tctcgactgg catttcgcgg tcgtgaatac ggatgtcgtc aacgcattcg cacttcccgg
     1861 cggattcatt tatgtgaacc gcggcgtcct cgagcatgcg agtacgatgg atgagctcgc
     1921 cggcgtgctg ggacacgaaa tcgagcacgt ggtgctgcgt cattcggtga agcagatgca
     1981 gcaggagcaa ggtgcgaacg tcggtctcgc gatagcgtgt acgctcacca acgtgtgcaa
     2041 caaccaggca gcggcaaccg cgatcaacct cggcggaacc gctgtgttcg ccaagttcag
     2101 cagagaggac gaagtgcagg ctgacgatgg cggattccag aacgtgatgc gcgccggcat
     2161 cagtcccgag ggcatgttga cgttcttcca gaagctgctt gccgaagagc aggcgcaggg
     2221 cggctccggc acgacggcac catggttcgc agatcacccc gggaccgaag atcgcatcgc
     2281 ggacatcaag cggatgctgg caaaggttcc ggcttcacaa ctggcgaagc tgcagacgga
     2341 ttcgccggcc ttccagtcca tgaagcggcg actcgcccag ctccccgcag cgccgccctc
     2401 caagcagtag ggccggaacc cgacagtccc gaatgttggc gtgcgcggag gtacctttaa
     2461 tggatgcctc agcgcgcgcc tcgcatcctg ctgctcgcgg gatctgtcct cctgctaccg
     2521 atatctcgcg ctgtatcgca gcagtcgatg cacggcgatc agacttccgc gcgtgcactc
     2581 actgatacaa cacgagccga cagcagcaaa ccggcagcaa tgacgttcgc gcagaaagcg
     2641 gcctactatt ccgacaggac gttttcaatt cgcacgatac tcggtgcgtc atacgccgcc
     2701 ggcatcgcgc agtggcgcgg aacgcccagg gaatggggcg ctggtatcag cggttatggg
     2761 cgacgcgacg cagcggccta cggtggctcc gtcattcgtc acactgtcga attcggagtg
     2821 ggtgcgttgt tccacgaaga tcctcgcttc gaaccatcga cgcgcaacgg tttcgcgtcg
     2881 cgcaccgaag atgcattgca caacaccatc ttcgtacgca ccgatgacgg cagtcatcgt
     2941 atcgcgtggt cgcgtgctgc cgcagcgctc gcaaccggat tcgcggtgaa cagctgggag
     3001 ccgcggcgac tgcacagcac gcatcatgcg ataatgctgt cgctcgccgg cgcgctgggt
     3061 tacgcgacag gtcacgtgac gcaggaattt acccccgaca tcaaacgatt cctgctgcgc
     3121 gaaacaccgc tgggcggacg ccggtaacag cagacaggga cgcggaacgc ccctgtcaag
     3181 catgcccaat cgtgtctgcg cgcgcttctg gcacgaagca tgatatgtcg cagaacagcc
     3241 acagactgga tttactgttg cgtcgtcacg caatccacat catgagtgac taacgcgatg
     3301 ttatccggca gcgctcacaa atgggcgcca tttagggaat tatgtcgcaa aaatttgcgt
     3361 tgcaggaata acaatccgca tgttctcgac actttcgtag tggcacacat ccc
//
LOCUS       DATIMD010000300         1869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1849433, whole genome shotgun sequence.
ACCESSION   DATIMD010000300 DATIMD010000000
VERSION     DATIMD010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1849433"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..712
                     /locus_tag="VLI40_06835"
     CDS             <1..712
                     /locus_tag="VLI40_06835"
                     /inference="COORDINATES: protein motif:HMM:NF027814.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96927.1"
                     /translation="PYRLMRSVLDGLDRDFVFSLCQYGWGDVWTWGADVGGNLWRVTG
                     DITDSWTSMSGIGFAQTGHEQYAGPGHWNDTDMLVVGKLGWGRTLRDTRLTPNEQLTH
                     ISLWALQAAPLIIGADLSQLDPFTTNLLGNPEVLAVDQDTLGKAAGRTLQQGRTEVWT
                     RPLADGTIAVGLFNRDLMPRTITVRWSDLGLTGSQPVRDLWRHDDMGVKRDELTAMVP
                     RHGVLLVKIGVPKGNGAR"
     gene            complement(732..>1869)
                     /locus_tag="VLI40_06840"
     CDS             complement(732..>1869)
                     /locus_tag="VLI40_06840"
                     /inference="COORDINATES: protein motif:HMM:NF014801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HSU96928.1"
                     /translation="ALENCDMVAATLCGVTDPREIARSICAMGHKWLWNEELGGLPSE
                     DFLCAVDPLLAGVREKLQGRYLTSDNVAGVLSADWAAKLGLRSGIPIPVGAFDAHWDA
                     IGAGLIEGDVVNVIGTSTCIVAIAKNVDCVPGVCGVVRGSAHPDYVGVEAGLSGVGNI
                     FESIATRSGHTVEELSAGLEHYRAGQTGLLRLVWDNGDRTVLVNPHLGGVTLGWNLNH
                     SAGDELFAAIEGTAFHTRIVLERMAEHGVPIERVIHGGGIAQKNDVLNRVYANVLGKP
                     ILVPERPITGLGSSIFAFLAAGTFNTIEEAQTALCPSFRIIEPDPAQQATCERLYVMY
                     KSLYLSLGDPSSPAIHVGTVLPDLRRIAVEVRTSTPASAPQSLT"
BASE COUNT          360 a          570 c          595 g          344 t
ORIGIN      
        1 gccatacagg ctcatgcgct cggttctcga cgggctcgac cgcgactttg tgttctcgct
       61 gtgtcagtac ggctggggcg acgtgtggac ctggggcgcg gatgtgggtg gaaacctgtg
      121 gcgcgtgacg ggcgacatta cagacagctg gaccagcatg tcgggcatcg gcttcgcgca
      181 gaccggtcat gagcagtacg cgggtcccgg ccactggaat gacaccgaca tgctcgtggt
      241 cgggaagctc ggctggggac gcacgcttcg cgacacgcgc ctgacaccga acgagcagtt
      301 gacgcatatc agtctctggg cgctgcaggc cgcgccgctc atcatcggcg cggatctctc
      361 gcagctcgat ccgtttacga cgaatctgct gggcaatcca gaggtgctgg cagtcgacca
      421 ggatactctt ggaaaggcag ccggtcgcac gcttcagcag ggacggacgg aggtctggac
      481 tcggccgctc gcagacggga cgattgcagt cggactcttc aatcgcgact tgatgcctcg
      541 gacgatcacc gttcgctggt cggatctcgg actgactggc agtcagccgg tgcgcgatct
      601 ctggcggcac gacgatatgg gcgtcaagcg cgacgagctc accgcgatgg tgccccggca
      661 tggagtgctg ctggtgaaga tcggcgtacc gaaaggcaat ggagcccggt gacgctccta
      721 ctggcgcgtc attacgtgag tgattgtggc gcgctcgctg gcgtcgatgt tcgcacctcg
      781 accgcgatgc gacgcaagtc agggagcaca gtgccgacat gtatcgcggg cgacgatgga
      841 tcgccgagcg agaggtacag tgatttgtac atcacataga gtcgctcgca agtcgcctgt
      901 tgtgcaggat caggctcgat gatgcggaac gatggacaga gcgcggtctg cgcttcctcg
      961 atggtgttga aggtaccggc ggcaagaaag gcgaagatcg aggagccaag gccggtgatc
     1021 gggcgctcag gaacgagaat cggcttgccg aggacgtttg cgtagacgcg gttgagcacg
     1081 tcgttcttct gtgcgattcc gccgccgtga atcacgcgct cgatgggcac gccgtgctcc
     1141 gccattcgct ccagcacgat gcgcgtgtga aatgccgtcc cttcaattgc ggcgaagagc
     1201 tcgtcgcctg cgctgtgatt cagattccag cccagcgtca caccacccag atgcggattc
     1261 accaacaccg ttcgatcgcc gttgtcccac acgaggcgga gcagccccgt ctgtcccgca
     1321 cgatagtgct cgaggccggc tgagagctct tcgacggtgt gtccacttcg agttgcgatc
     1381 gactcgaaga tgtttccgac acccgacagt ccagcctcga caccaacgta gtcaggatgc
     1441 gcagatccgc gcacaacgcc gcatacgcca ggcacgcagt cgacattctt cgcgatcgca
     1501 acgatgcagg tcgacgttcc gatcacgttg acgacatcgc cttcgatgag acccgcgcca
     1561 atcgcgtccc agtgcgcatc gaacgctccc actggaatcg gaattccgga tctgaggccc
     1621 agcttcgctg cccaatccgc agacagtaca ccggcgacat tatccgatgt gagatagcga
     1681 ccctgcagtt tctcgcgcac accggccagt agtggatcaa ccgcgcagag aaaatcttcg
     1741 gaaggaaggc cgccaagctc ctcgttccag agccacttgt ggcccatggc gcagatcgag
     1801 cgggcgatct cgcgcggatc ggtcacgccg cacagcgtcg cggcaaccat gtcgcagttc
     1861 tcgagtgcc
//
LOCUS       DATIMD010000301         5631 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_981967, whole genome shotgun sequence.
ACCESSION   DATIMD010000301 DATIMD010000000
VERSION     DATIMD010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5631
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_981967"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..717
                     /locus_tag="VLI40_06845"
     CDS             <1..717
                     /locus_tag="VLI40_06845"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HSU96929.1"
                     /translation="FNDVTSVTWQTALGQGETEMPYRNDFGDGPDRNYDPNYRGYTGP
                     YQWAGVGYNPDQWGWRGWEGRYASGRYGDYEPYYGNYGYGAAGYGAGGNYYNRSGRGA
                     TRENYTNYAGRGPRNYRRSDERIREDVNDYLARNPDLDATDVDVRVDNGEVTLSGVVE
                     DRGAKRLAEDIADDVSGVTDVHNDLKIRHGLFASVTGEKATDREVDIANQREGSSAST
                     RHGNRSTTSGARTTSESTAT"
     gene            847..1065
                     /locus_tag="VLI40_06850"
     CDS             847..1065
                     /locus_tag="VLI40_06850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96930.1"
                     /translation="MPTSQNDTSSDPRQHTANIKRMLNDTVTHLRDDTEKVDDPRAKA
                     LFETSAEVLTGLVTAFEHYDNKSESAWK"
     gene            complement(1119..1688)
                     /locus_tag="VLI40_06855"
     CDS             complement(1119..1688)
                     /locus_tag="VLI40_06855"
                     /inference="COORDINATES: protein motif:HMM:NF015674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HdeD family acid-resistance protein"
                     /protein_id="HSU96931.1"
                     /translation="MELDLASHWWAVALRGVVAILFGIAALARPGVTVLALVVLFGIY
                     ALIDGVLAIATAIWAAGRHVRWWPFALEGVVGIAAGILTLAWPSITAVVLVILIGWWA
                     LITGIFEIVAAVRLRNLIRGEWLLALSGILSLLVGVLLVIYPVAGAVSVVWVVGAYAL
                     VFGVLLVALGVRLRSFASASGSAGEHAPA"
     gene            complement(1777..2250)
                     /locus_tag="VLI40_06860"
     CDS             complement(1777..2250)
                     /locus_tag="VLI40_06860"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSU96932.1"
                     /translation="MMGARERFIEEVGMAAEADGLPRIAGRLFGHLLLSPGPCTLDEI
                     AEALNVSKGSVSTDARLLLRHGWLRRATRAGDRKDYYEMAPDFFAGIVAYRLERWDAL
                     HDLVAASIPGFTEESATVRSRLEYLDEAQAFFVAGMRQLLLEWRSRRGVIAPPMD"
     gene            2385..3008
                     /locus_tag="VLI40_06865"
     CDS             2385..3008
                     /locus_tag="VLI40_06865"
                     /inference="COORDINATES: protein motif:HMM:NF024587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidylate kinase-like family protein"
                     /protein_id="HSU96933.1"
                     /translation="MQNQKVDLITVSREFGAGGSDFAAELGERLGWPVLDQDIIRLVA
                     ERLKLQVTTVERLDEHPPNWLARVTSALLIAPPELPLGIDTPHMLHMDSVAEAAQRVI
                     VEAAENPPLIIVGHSGQNVFATRPGTLHVRLVAPLDSRVDRLTARFGWDRNTAAERAH
                     HIDADRAAYSQRYYHREWRDPLLYHVVIDTGRVSIHEAVTMIEAMAR"
     gene            3005..4588
                     /locus_tag="VLI40_06870"
     CDS             3005..4588
                     /locus_tag="VLI40_06870"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HSU96934.1"
                     /translation="MTSVPGALERAEPAEGTHKWVIAGTVMTGSIMASLDSSIVNVAL
                     PNMSGTLGATIEEITWVITGYILANVIIMPIVALLSSRFGRKNFYMASVVLFTTASMA
                     CGLAHSLLVMVIFRIIQGIGGGVLITVSQAILRESFPPEEQGIAMGVYGLGVVLAPAL
                     GPTLGGWLTDNYSWPWIFYINLPIGILNLILVARFIQDPPYLIREKGEIDFLGLGLLV
                     AGLGSLQLMLEEGERNQWFESGFILKLAAVAAVGLILFIWREMEARRPAVNLRILGNI
                     SFTSATAIGGVLGLALNGSLFLLPLFLQNLIGFDATQSGIALMPRSLAMALLMPIAGR
                     FYNKLGPRVLIGSGLIICAYGFWGLSVLTTNVGFWDIFWPQLWQGVGFSLIFVALSTA
                     ALATIAKPQMTQATGLYNVVRQVMGSVGIAIAATQLTSSTSRYHDVLSESTGMWNPTT
                     VQFLRNATAAMIHAGADKFTAQQRALELLDISVTRQATVLAYNHVFLLVTALFVLGLP
                     LVLLLRRGERPAGAEVHVD"
     gene            complement(4627..>5631)
                     /locus_tag="VLI40_06875"
     CDS             complement(4627..>5631)
                     /locus_tag="VLI40_06875"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU96935.1"
                     /translation="RAAALVRQLLAFSRRQVLVPSLIDLNAVVIEMEQMLKRVLPPTV
                     TIVTSLDPELRAVFADTGQVEQVLMNLVVNARDAMADGGTLTIATANAATDSTGRAMD
                     ADTASTPDVVLTVSDTGCGMSREVQARIFEPFFTTKEVGKGTGLGLSTAHGIVNQSGG
                     RLTVASTEGIGTTFTMYLPAAASPADTNATQAAGQISGRPKPGVVLLVDDDAAVRYVA
                     ARILESAGYKVLIASDGPEALAIHAQHGASIDLLITDMVMPTMTGTAVTEALRAERPH
                     LPVVLMSGLADDAMASGIAGDPVMILRKPFTPAEFVRKATDARRASSRTRHARETTAV
                     "
BASE COUNT         1147 a         1836 c         1659 g          989 t
ORIGIN      
        1 ttcaacgacg ttacgagcgt cacatggcag actgcattgg gacagggaga gacggagatg
       61 ccgtacagaa atgatttcgg agatggaccc gaccgcaact acgacccgaa ctatcgcgga
      121 tacacgggtc cataccagtg ggccggcgtg ggctacaatc cggaccagtg gggctggcgc
      181 ggctgggaag gaaggtacgc gagcggtcgt tatggagatt acgaaccgta ctacgggaac
      241 tacggctacg gcgcggccgg atatggcgcc ggcgggaact actacaacag gtccggtcgc
      301 ggcgccacac gcgagaacta caccaactac gcaggccgtg gcccgcgcaa ctatcgccgc
      361 tccgatgagc gaatccgcga ggacgtgaac gactacctgg cgcgcaaccc cgatctggat
      421 gcaacggatg tcgacgtgcg tgtcgataac ggcgaggtaa cgctttcggg cgtcgtcgaa
      481 gatcgcggag cgaaacgtct cgccgaggac attgcggacg acgtgtcagg cgtgaccgac
      541 gtgcacaacg atctcaagat tcggcacgga ttgttcgcca gcgtgacggg cgaaaaggcg
      601 actgatcgcg aggtcgacat cgcgaaccag cgcgagggaa gctctgccag cacgcggcac
      661 gggaaccgaa gcaccacctc cggcgcgcgg acaacatccg aaagcacagc gacatgatcg
      721 tgcgctgacg cgttcggtgg cccggaacct gatgccgtgc ccagcatcaa gttcccgagc
      781 aggttcccaa gcaggtttcc gaggctgcat aaagccttca attctccgca caccaggagc
      841 actacgatgc caacgtctca gaatgacacg agcagcgatc cgcgccaaca cacggcaaac
      901 atcaagcgga tgctcaatga cacggtcacg cacctgcgcg acgacaccga gaaagtcgat
      961 gacccgcgag cgaaggcact attcgagacc agcgctgaag ttctgactgg cctcgtcacc
     1021 gccttcgagc actacgacaa taaatcggag tccgcgtgga agtagcggcc ggaatcacgg
     1081 agtgagtagt cgagcggcta caggtggata ccagagcctc aagccggtgc atgttcgcca
     1141 gcgcttccac tcgcgctggc gaaactgcga agcctgactc caagagcaac cagcaatacg
     1201 ccaaagacga gcgcgtaggc ccctaccacc cataccaccg aaacagcacc ggccacggga
     1261 tatatcacca gcagcacgcc gacgagtagc gagagaatac cgctcagcgc gagcaaccac
     1321 tcgcctctga tcaaattacg gagccgaacc gcggcgacga tttcgaagat gccggtgatg
     1381 agtgcccacc atccgatcag tatcacgagc accacagcag taatactcgg ccacgccaat
     1441 gtcaggatgc cagctgcgat gccaacgacc ccctccagcg caaacggcca ccatcgtacg
     1501 tgacgccctg ctgcccagat agctgtggcg atcgcaagca ctccgtcgat caacgcgtag
     1561 atgccgaaca gaactacgag agccaggacc gtgacacccg gtcgggccag agccgcaatg
     1621 ccaaaaagta ttgcgaccac tccacgcaac gcgactgccc accagtgact agcgagatcg
     1681 agttccaccg tcgctcctcc ctcgcactca tgcttgcgag atacgttcca ttccacagcc
     1741 tggcgcagaa tgcttcgtca tgcacggtcg atgcggtcag tccattggtg gcgcgatgac
     1801 gccgcggcgc gacctccact ccagcaacag ctgccgcatc ccggcgacga aaaacgcctg
     1861 cgcctcatcc agatattcca accggctgcg aaccgtagcc gactcctccg tgaacccagg
     1921 gatcgatgcc gccaccagat cgtgcaacgc atcccaccgc tcgagccggt aagccacgat
     1981 ccccgcaaag aagtccggcg ccatctcgta atagtccttg cggtcgccag cgcgagtggc
     2041 gcggcgcagc cacccgtggc ggagcaggag gcgcgcatcg gtgctcacgc tccccttgct
     2101 cacgttgagc gcctccgcaa tctcgtccag tgtgcacgga cccgggctca gcaacaggtg
     2161 gccgaagagc cgcccggcaa tgcgcggcag cccgtccgcc tccgccgcca taccgacctc
     2221 ttcgatgaat cgctcgcgcg ctcccatcat gcaattccct gattggccca agtttgttat
     2281 gtttgttcag tatacattga acgtaaacca gaccgccgcc gggtcaagcg tattgggcac
     2341 ttaaacccgg accgggcggc cggatcaacc gtccagaacc aacagtgcag aaccagaaag
     2401 tcgatctcat aaccgttagc cgcgagtttg gagctggagg tagcgatttt gccgcggagc
     2461 tgggcgagcg cctcggctgg cccgtactcg accaggacat catccgcctc gtcgcggagc
     2521 ggctcaaact gcaggtcacc acggtcgagc gactcgacga acacccgccc aactggctgg
     2581 cacgcgtcac ctcggcgctg ctcatcgcgc cgccggagct gcccctcggg atcgacacac
     2641 cgcacatgct gcacatggat tccgtcgcag aggccgctca gcgcgtcatc gtcgaagccg
     2701 ccgaaaaccc tccgctcatc atcgtgggcc acagtggcca gaacgtcttc gccactcgcc
     2761 ccggcacgct gcatgtccgc ctcgtcgcac cgctggactc gcgcgtcgat cggctcaccg
     2821 cccggtttgg ctgggatcgc aacaccgccg ccgaacgcgc gcatcacatc gacgccgatc
     2881 gcgccgccta ctcccagcgt tactaccatc gcgaatggcg tgatcccctg ctctaccacg
     2941 tagtcatcga tacaggccga gtctcgatcc atgaggcggt gacgatgatc gaggcgatgg
     3001 cgcggtgacg tcagtacccg gggctcttga acgagctgag cctgcggagg ggacgcacaa
     3061 gtgggtcatc gccggcaccg tgatgacggg ctccatcatg gcgtctctgg attcgagtat
     3121 cgtcaatgtt gctctgccca acatgagcgg taccctcggt gcgaccatcg aggaaatcac
     3181 atgggtgatc acgggttaca tcctcgccaa cgtgatcatc atgccgatcg tcgcgctcct
     3241 gagctcgagg ttcggccgca agaacttcta catggcgagc gtggtgctgt tcacgacggc
     3301 atccatggcc tgcggactcg cgcactcgct gctcgtgatg gtcatattca ggatcatcca
     3361 gggtattggc ggcggtgtgc tcatcacagt gtcgcaggcg attctccgcg aatcgtttcc
     3421 gcccgaggaa cagggaatcg caatgggcgt gtacggactg ggcgtcgtgc tcgcaccggc
     3481 gctcggcccc acgctgggcg gctggctcac ggataactac tcgtggccat ggattttcta
     3541 catcaacctc ccgatcggga ttctcaacct catcctcgtc gcgcgcttca ttcaggatcc
     3601 gccgtatctc attcgtgaga agggagagat agacttcctg ggactcggcc tgctcgttgc
     3661 cgggcttgga tcgctgcaac tcatgctcga agagggcgaa cgcaaccagt ggttcgagtc
     3721 cggtttcatc ctgaagctcg ccgcggtcgc ggcggttgga ttgatcctct tcatctggcg
     3781 cgagatggaa gcgcgcaggc cagccgtcaa cctccggatc ctgggcaaca tctccttcac
     3841 gtctgcgacc gcgatcggcg gcgtgctcgg actggcactc aacggaagtc tctttctcct
     3901 tccgctcttt ctgcagaatc tgatcggctt cgacgccacg caatccggca tcgctctcat
     3961 gccacgcagt ctggcgatgg cgctgctcat gccgatcgcc ggacggttct acaacaagct
     4021 cggtccgcgc gtgctcattg gatcgggcct gatcatctgc gcgtacggct tctggggact
     4081 ctccgttctc acgaccaacg ttggattctg ggacatcttc tggccccagc tctggcaggg
     4141 agttggcttc tcactcatct tcgttgcgtt gagtacggcc gcgctcgcaa cgatcgcgaa
     4201 accgcagatg acgcaggcaa caggcctgta caacgtggtg cgacaggtga tggggagcgt
     4261 cggaatcgcg atagcggcga ctcagctcac cagctccaca tcgcgttacc acgacgtgct
     4321 ctcggagagc accggaatgt ggaaccccac caccgtgcaa tttctcagga acgcaactgc
     4381 tgcgatgatt cacgctggcg ccgacaagtt caccgctcag caacgcgcgc tcgagctgct
     4441 cgacatctcg gtgacacggc aggcgaccgt gctcgcgtac aaccacgtct tcctgctggt
     4501 gacagcactc ttcgtgctcg gtcttccgct cgtactgctc ctcaggcgcg gagagcgacc
     4561 ggccggcgcc gaagtacacg tggactgatc gtctggcgcc ggcgcgtcgt caacgcagca
     4621 gcgacttcat accgctgtag tttcgcgcgc gtgtcgagtc cgtgacgacg cacggcgtgc
     4681 atccgtcgcc ttgcgaacga actcggcggg cgtgaacggc ttgcgcagga tcattaccgg
     4741 gtcgccggca atgccgctcg ccatcgcatc gtctgccagg ccggacatga ggactacggg
     4801 caggtgcggc cgttccgcgc gcaacgcctc ggtgaccgct gtaccggtca tcgtcggcat
     4861 gaccatgtcg gtgatcagca ggtcgatgga agcgccatgc tgcgcgtgaa tcgcaagcgc
     4921 ctccggaccg tcggacgcga taaggacctt gtaaccggca gattcaagaa tgcgcgccgc
     4981 gacgtagcgc acagctgcat cgtcatccac aagcagcacg acgcccggtt tgggacgacc
     5041 cgaaatctgt ccagctgcct gtgtcgcgtt ggtatctgct ggtgacgcgg ccgcggggag
     5101 atacatggta aacgtcgttc caatgccttc ggtactcgcg acagtgaggc gaccaccgga
     5161 ctggttcacg atcccatgag ccgtcgagag acccaatccg gtccccttgc caacttcctt
     5221 cgtagtaaag aacggctcga agatgcgagc ctggacttcg cgcgacattc cgcagccggt
     5281 gtcgctgacg gtgagcacga cgtccggtgt ggatgctgtg tcggcgtcca tcgcgcggcc
     5341 tgtcgaatcc gtggccgcgt tcgcagttgc gatcgtaagc gttcctccat cggccatcgc
     5401 gtcgcgcgca ttgaccacga ggttcatcaa tacctgttcg acctgacccg tgtcagcgaa
     5461 gactgcgcga agctccggat cgagcgacgt cacgatagtg accgttggag gaagtacacg
     5521 cttgagcatc tgctccatct cgatcacaac cgcgttgaga tcgatgagac tcggcaccag
     5581 cacctgccgg cggctgaatg ccagaagctg tcgcaccagt gcggccgcgc g
//
LOCUS       DATIMD010000302         2782 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5317230, whole genome shotgun sequence.
ACCESSION   DATIMD010000302 DATIMD010000000
VERSION     DATIMD010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2782
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5317230"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            212..631
                     /locus_tag="VLI40_06880"
     CDS             212..631
                     /locus_tag="VLI40_06880"
                     /inference="COORDINATES: protein motif:HMM:NF013677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HSU96936.1"
                     /translation="MSNAAGRTHPHRTYAQEFKQQVIRETLEPGMSVSIVARRHDINA
                     NVVFAWRKQYREGKLVIPALEAAPSVPSTKLLSVDVIDSALVLRPPESSMASQATSGV
                     PMPAPVCEIEVEIGKRRVRIRGLSAERAEAFLQECLK"
     gene            628..972
                     /gene="tnpB"
                     /locus_tag="VLI40_06885"
     CDS             628..972
                     /gene="tnpB"
                     /locus_tag="VLI40_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000624647.1"
                     /note="TnpB, as the term is used for proteins encoded by
                     IS66 family insertion elements, is considered an accessory
                     protein, since TnpC, encoded by a neighboring gene, is a
                     DDE family transposase; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HSU96937.1"
                     /translation="MIALPAGTRVWLVAGVTDMRCGFQGLAAKVQTALEENPLGGNVF
                     IFRGRRGDLVKLLWATDDGLWLLAKRLERGRFIWPQADGGKIHLSSAQLSMLLEGIDW
                     RHPQRTAALSML"
     gene            1003..2577
                     /locus_tag="VLI40_06890"
     CDS             1003..2577
                     /locus_tag="VLI40_06890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000099160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HSU96938.1"
                     /translation="MSQSAPLPTTVAELQALVLEQQASIENMVREIAARDDQIERLKA
                     QIDKLRRMYFGSKSEKLARQIDKLEAQLEDLTAGQGAAETRKHREKTSTAPPGRAPTR
                     EPLPPHLPRDEIELTPNPACPKCATTMQRLGEDVSEQLARVAAAFKAIRTIRHKLCCP
                     DCGHIEQPAMPSLPIEHSIAHPSLLADIAVSKFADHQPLYRQSEIAARDGVTLDRASM
                     GRWIGQIAELCGPLVEAIQRYVLVPGKVHVDDTPVAVLAPGNGKTVTGRFWVYVRDDH
                     RSGSTEPAAVWFDFSSNRKGVHPQTRLAAFRGILQADAYAGFDQLYASGEIHEAACWD
                     HARRYIYDVHARTPTSDTQQLLEMIGELYSIEADIRGKAPDERLRFRQEKSKPLLAKL
                     EATIRVKLATLSTKSALAKAINYSLNHWAALVFYCEDGRVEISNVLAENALRCVALGR
                     KNYLFVGSDSGGERAAAMYSLIGSAKLNGINPRAYLEYVLTHIADHKISRIDELLPWN
                     VADKLKPATPPTPLTG"
BASE COUNT          591 a          845 c          849 g          497 t
ORIGIN      
        1 aatgcggtaa ccaacccgcg gatatcagcg tgattcaccg tcggccttac tgctacgtcg
       61 ccctcaggaa attccattga aatgaaagct gaaagaaccc ctcgcttcac ttgacacgga
      121 aagtcatatc agcgactcgg cacgaccgta tctcagtgct gaatatttcg acgcatgatg
      181 ggcgcgttca gcttgacgga gacagtcagc catgtcgaac gcagcgggcc gtacgcatcc
      241 ccatcgcacg tatgcgcaag aatttaagca gcaggtgatc agggagacat tggaacccgg
      301 catgtcggtg tcgatcgttg cgcgacggca cgacatcaac gccaatgtgg tgttcgcatg
      361 gcgcaagcaa taccgtgaag gcaagctggt cattcctgca ctcgaagctg cgccgagcgt
      421 gcccagcacg aagctgctga gtgtcgacgt gatcgactcg gcattggtac tgcggccgcc
      481 tgagtcgtca atggcgtcgc aagcgacgag cggcgtaccg atgccggcgc ccgtgtgcga
      541 aatcgaggtg gagatcggca aacggcgtgt gaggattcgc ggcctgtctg ccgagcgcgc
      601 tgaagcgttt ctgcaggaat gcctgaagtg atcgcgctgc cggcaggtac gcgcgtttgg
      661 ctcgtggccg gcgtgacaga tatgcgctgc ggcttccagg ggctggccgc gaaagtgcag
      721 acggcgctcg aagagaatcc gctgggtggc aacgtattca tcttccgcgg ccgccgcggc
      781 gatctcgtga agctgctttg ggcgaccgac gatgggctct ggctgctcgc aaaacgattg
      841 gagcgaggcc ggtttatctg gccccaggcc gacggtggaa aaatccatct gtcgagcgca
      901 cagctgtcga tgctcctcga aggcatcgac tggcgacacc cgcaacgcac cgctgctctg
      961 tcgatgttgt aaaccacatc gaaggctcgt aaactgcgac gcatgtccca atctgcgccg
     1021 cttcccacca ccgtcgcgga gctccaggct ctggtgctcg agcagcaggc gtcgatcgag
     1081 aacatggtgc gggagatcgc cgcacgggac gaccaaatcg aacgcctgaa ggcgcagatc
     1141 gacaagctca ggcggatgta cttcgggagc aagtccgaga aactggcccg gcagatcgat
     1201 aaactcgagg cgcagctgga agacctgacg gccggtcagg gcgctgccga gacgcgaaag
     1261 caccgagaga agacgtcgac ggcgccgccc ggtcgagcgc ccacgcgaga gccgctgccg
     1321 ccgcacttgc cacgcgatga aatcgaactc acgccgaatc cggcttgccc caagtgtgcg
     1381 acaacgatgc agcgactcgg cgaggatgtc tccgagcagc tcgcgcgcgt ggcggctgcg
     1441 tttaaagcga tccgcacgat ccgtcacaag ctgtgctgtc ctgactgcgg ccacatcgaa
     1501 cagcccgcga tgcccagcct gcccatcgag cacagcatcg cgcatccgag cctgctggcc
     1561 gacattgcgg tatcgaagtt cgccgatcac caaccgctgt accgccaatc ggagattgcg
     1621 gcacgcgacg gcgtgacgtt ggatcgggcc agtatgggcc gctggatcgg gcagatcgcc
     1681 gagctctgcg gaccgcttgt tgaagcaatc cagcgctacg tgctggtccc cggcaaggta
     1741 cacgtcgacg acacaccggt tgcggtgctc gcgccaggca acggaaagac ggtgaccggt
     1801 cgcttctggg tctacgtgcg tgacgatcac cgctcgggct cgactgagcc ggctgcggta
     1861 tggttcgact tctcctcaaa tcgcaaaggc gtccatcctc agacccgact cgccgcattc
     1921 cgcggcatcc tgcaggccga tgcatacgcc ggtttcgatc aactgtatgc gagcggcgag
     1981 atccacgaag cggcatgctg ggatcacgcg aggcggtaca tttacgatgt tcacgcgcgc
     2041 acaccgactt cagataccca gcaactgctc gagatgatcg gcgagctcta cagcatcgaa
     2101 gccgacatcc gcggcaaggc gcctgacgag cgcctgcgct tcaggcagga aaagagcaag
     2161 ccgttgctcg cgaagctcga agcgacgatc agggtgaaac tcgcgacgct atcgacgaag
     2221 tccgcgctcg caaaagcaat caactactcg ctgaaccatt gggcggcgct cgtgttctac
     2281 tgcgaggacg gtcgagtcga gatcagcaac gtgcttgccg agaacgcgct gcgctgtgtc
     2341 gcgctcggac gcaagaacta tctgttcgtc ggctccgaca gcgggggcga gcgagccgcc
     2401 gcgatgtata gcttgatcgg gtcggcaaag ctcaacggga tcaacccgcg tgcctatctg
     2461 gaatacgtcc tgacccatat cgctgatcac aagatctcac gcattgacga attgctgcct
     2521 tggaacgtgg ccgacaaact gaagccggcc actccgccta cacccttaac cgggtagatc
     2581 tggacagatt tgcgtggatc gtgtccacga ttgccgatca tgggcacgat ccacgtgatc
     2641 tatacgaatt ccaccacgac agcaccatca tgcctcacgc gcgcgcgaat gaggaactgg
     2701 cccagccgag tcgctgatat gactttccgt gtcaagtgaa gcgaggggtt ctttcagctt
     2761 tcatttcaat ggaatttcct ga
//
LOCUS       DATIMD010000303         3777 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2714195, whole genome shotgun sequence.
ACCESSION   DATIMD010000303 DATIMD010000000
VERSION     DATIMD010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3777
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2714195"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1266
                     /locus_tag="VLI40_06895"
     CDS             <1..1266
                     /locus_tag="VLI40_06895"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU96939.1"
                     /translation="SASLSGQYQQGGQQFFNGVSLSASSDVMQSQYSIGLNYRINAAT
                     FITPKVQRANSAAVDADIAGASESLSATVKQDYLTALQSLAQAELQDSLVANAKAQLE
                     LAQARSQVGTGTLLDVRRAEVALSQQQVAQLTARNQNEIDKLRLFQQMGVPQPPNVQL
                     VSNLKVGDPLPALDTILALAHRQNPGVVALRAREHVADLTVDRERTEYTPTLTLSTGI
                     GGYTYQYRDPNFLINQAQANVSSARSNCIATQEVRQAVGLPNTLAQCSTIQFTDAQAA
                     QLRAQNSRFPFSFTPAPRSVSAQISLPIFDGFAREQRLQESQVARENARYKVESSELA
                     LNADITAAYLSLQTAQQTVALQQANAAKARQELDFVQNEYAVGLSTFIDLSTSRTAYA
                     QAETDRINAIYNYHKAFAVLESAVGRPLR"
     gene            1353..2705
                     /locus_tag="VLI40_06900"
     CDS             1353..2705
                     /locus_tag="VLI40_06900"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSU96940.1"
                     /translation="MPTILVADDQPDIIEALRLLLKGAGYSIETARSVAGIIAAVDSK
                     PLDVVLMDLNYTRDTTSGREGLSVLGRIKELDDSLPIIVMTAWGSVNGAVDAIRHGAS
                     DYIEKPWDNTRLLTTINTQLELGRAVRAGRQLERENRALKRTGMPELIAASPRMRPIL
                     DLMERVAPSDANVLITGEHGTGKEVVARWLHAASPRARSAFVAVNMGGLSDGVFESEL
                     FGPVKGSFTDARADRAGRFELADGGTLFLDEVANVPLNLQAKLLRVLQTREVERVGSS
                     RPKVVNVRVLSATNIDPHKEVSAGRFREDLLFRLNTIELKLPPLRERREDIPALAAHF
                     LKRQSARYNKQLTGFDQAAMQTLMDHLWPGNIRELEHTIERAVLLANGDVVRTSDLAL
                     NERGSGSAQRLEELTLSEAERTLIEKALARFDGNVSHAAKALGVSRSALYRRMSAHGL
                     "
     gene            2695..>3777
                     /locus_tag="VLI40_06905"
     CDS             2695..>3777
                     /locus_tag="VLI40_06905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96941.1"
                     /translation="MASDDRLIGSERGAVHFERRVLLLAIAVAVPGIVLALALLWMSG
                     YSLGARIVITLVTVLVSLLIAIALRAYVIHPLRTVSNLAAALREGDFSVRARGESTSD
                     ALGLALLEFNRLGAILRAQRLTALDASALARTVMREINVAVFAFDDEDILRLVNRAGE
                     RLINLPSERAIGRSASTLGLADCLVGDPDRAFEGEFVPGENRWQLRRTTFRQGGRPHQ
                     LVVLADLSRALRDEERSAWQRLLRVLGHEINNSLAPIQSLSATLREHVRRTPRANDWE
                     EDLDRGLEVIGGRSAALARFMASYTLLARMPAPARAPVDVAAWIDRIVHMETRVSIDV
                     ERSPQLMIDADADQLDQMLINLIRNAA"
BASE COUNT          743 a         1209 c         1156 g          669 t
ORIGIN      
        1 agcgcatcac tttcaggtca gtaccagcag ggcggccagc agttcttcaa cggtgtatcg
       61 ttgagcgcga gcagcgacgt catgcagtcg cagtacagca tcggcctcaa ctatcgcatc
      121 aacgcggcta cgttcatcac accgaaagtg cagcgcgcta acagtgctgc ggtggatgcc
      181 gacatcgcgg gggcatcgga gagtctcagc gcgaccgtca agcaggatta cctgaccgcg
      241 cttcagagcc tggcgcaggc agagctgcag gactcactcg tcgcaaacgc caaagctcag
      301 ctggagctgg cgcaggcgcg gtcgcaggtt ggcaccggta cactgctgga cgtgcggcgc
      361 gccgaggtgg cgctcagtca gcaacaggtc gcacagctga ccgcacgcaa tcagaacgag
      421 atcgacaagc tgcggctttt ccagcagatg ggagtgccac agccaccgaa cgtccagctc
      481 gtcagcaatc tgaaggtcgg cgatccgttg ccggcactcg acacgatcct tgccctggcg
      541 catcgccaga atcccggcgt cgtcgcattg agggcacggg agcatgtcgc cgatctcacg
      601 gtcgatcgcg agcggaccga atacactccc acgctcacgc tcagtacagg tattggcgga
      661 tacacgtatc agtaccgcga tcccaatttt ctcatcaatc aggcacaggc gaatgtgtcc
      721 agtgcaaggt cgaactgcat cgcaacccag gaagtgcggc aggccgtcgg acttcccaac
      781 acgctcgctc agtgcagcac gatccagttc accgatgcac aggccgcgca gctgcgggcg
      841 cagaattccc ggttcccgtt ctcgttcact cccgcaccac gcagcgtatc agcgcagata
      901 tcgcttccca tattcgacgg ctttgcccgg gagcagcgtc tgcaggagtc gcaggtcgcg
      961 cgcgagaacg ctcgctacaa ggtggagtcg agcgagctcg cgctgaatgc cgacatcacg
     1021 gccgcgtatc tatcgctgca aaccgcgcaa cagaccgtcg cccttcaaca ggccaacgcc
     1081 gccaaggcac gccaggaact ggacttcgtg cagaacgaat acgcggtcgg tctctccacc
     1141 ttcatcgatc tgtcgacgtc gcgaacggcg tatgcgcagg cggagacgga ccggatcaac
     1201 gcgatctaca actaccacaa ggcgtttgcg gttctggaga gtgctgtggg gcggccactg
     1261 cggtgattgc gtaaaagccc gttgcgtaaa tttacgcaac gggcttttac ggtatattgc
     1321 gagagcgaac tgtcgccacc gtcgaatctc agatgcccac aatcctcgta gccgacgacc
     1381 agcccgacat catcgaggcc ctgcgcctcc tgctcaaggg cgccggctac agcatcgaga
     1441 ccgcgcgctc cgtcgctggc atcatcgcgg ccgtcgatag caagccgctc gacgtggtgc
     1501 tcatggacct caactacaca cgcgacacga catccggtcg cgagggcctg agcgtgctcg
     1561 gccgcataaa ggagctcgac gactcactcc cgatcatcgt catgacggcg tggggaagcg
     1621 tcaacggtgc ggtggacgcg atccgccacg gtgcatctga ctacatcgag aagccgtggg
     1681 ataacacccg tctcctaacc acgatcaaca cccagctcga gctcggcagg gctgtgcgtg
     1741 cgggtcgcca actcgagcgc gagaaccgcg cgctcaagcg gaccggcatg cctgaattga
     1801 ttgccgcgtc accacgcatg cggccgattc tcgatctcat ggagcgtgtt gcgccgtcgg
     1861 acgcgaacgt gctgataacg ggcgagcacg ggaccggcaa ggaggtagtc gcacgctggc
     1921 tgcacgcagc ttccccccgc gcacgctcgg cgtttgttgc cgtcaacatg ggcggcctgt
     1981 ccgacggggt cttcgagagc gagctgttcg ggcccgtcaa gggatcgttc actgatgcga
     2041 gggcggatcg tgccggacgc ttcgagcttg ccgacggtgg aacattgttc ctcgacgagg
     2101 tggcgaacgt cccgctcaat ctccaggcga aattgctccg cgtgttgcag acgcgcgaag
     2161 tggagcgcgt cgggtcgtca cgccccaagg tcgtcaacgt gcgtgtgttg tctgcaacca
     2221 acatcgatcc gcacaaggaa gtatcggcgg gccgctttcg cgaggacctg ctgttccgtc
     2281 tcaataccat cgagctcaag ctgccgccgt tgcgcgagcg acgtgaggac atccccgcgc
     2341 ttgccgcgca ctttctgaaa cgccagtccg cgcgttacaa caagcagctc acgggcttcg
     2401 atcaggcggc gatgcagacg ctcatggatc acctgtggcc aggcaatatc agagaactgg
     2461 agcacaccat cgagcgtgcc gtccttctcg ccaatggcga cgtcgtgcgc acatccgacc
     2521 ttgcgttgaa cgagcgcggc tcgggcagtg cccaacgact cgaagagctg accctgagcg
     2581 aggccgagcg cacactcatt gagaaggcac tcgctcgctt cgatgggaat gtgagccacg
     2641 ccgcgaaagc gctgggcgtg agccgcagcg cgctctaccg gcgcatgtcc gcgcatggcc
     2701 tctgacgaca ggctgatcgg atctgaacgc ggcgccgtgc atttcgaacg gcgcgttttg
     2761 ttgctcgcaa tagctgtcgc ggtaccgggc attgtgctcg cgctcgcatt gctctggatg
     2821 agcggctact cgcttggcgc gcgcatcgtg atcacgctcg tgacggtgtt ggtatcgctc
     2881 ctgatagcca tcgcgcttcg cgcttacgtg atccatccgc ttcgaacagt ctccaatctc
     2941 gcggccgcgc tacgagaagg tgacttttcg gtgcgcgcgc gcggcgagag caccagcgac
     3001 gcgctcggtc tcgcgctgct cgagttcaac agactgggcg cgatactccg cgctcaacgc
     3061 ctgaccgcgc tggacgcatc agccctcgcg cgaaccgtga tgcgtgagat caacgtcgcc
     3121 gtgttcgcct tcgacgatga agacatcctg cgactcgtca accgtgcggg cgagcgactc
     3181 atcaatcttc catccgagcg cgccatcggc cgctcggcga gcacgctcgg tctcgccgat
     3241 tgtctcgtcg gcgatcccga cagggcattc gagggtgagt tcgttccagg cgagaaccgg
     3301 tggcaactgc gcaggacgac ttttcggcag ggcggacgac cgcatcagct cgtagttctc
     3361 gccgatctga gccgagcgtt gcgcgatgaa gagcgcagtg cgtggcagcg attgctgcgt
     3421 gtgctcggtc acgagatcaa caattcactc gcgccgattc aatcgctgtc ggcaacactc
     3481 cgcgagcacg tcagacgaac gccgcgcgcg aacgactggg aagaagatct cgatcgtgga
     3541 cttgaagtaa ttggcggaag atcggcagcg ctcgcgcgct tcatggcgtc gtacacgctg
     3601 cttgcgcgaa tgccagcgcc ggcgcgcgca cccgtcgacg tcgcagcatg gatcgaccgc
     3661 atagttcata tggaaacccg cgtcagcatc gacgtcgagc gaagcccgca gctgatgata
     3721 gacgctgatg cggatcaact ggatcagatg ctcatcaacc tcatccgcaa cgcggcc
//
LOCUS       DATIMD010000304         3978 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2714459, whole genome shotgun sequence.
ACCESSION   DATIMD010000304 DATIMD010000000
VERSION     DATIMD010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3978
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2714459"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1201
                     /locus_tag="VLI40_06910"
     CDS             <1..1201
                     /locus_tag="VLI40_06910"
                     /inference="COORDINATES: protein motif:HMM:NF014788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AIR synthase related protein"
                     /protein_id="HSU96942.1"
                     /translation="MRVKHRGEVVADIPNPFLTDEAPVYRRPMQEPEYLKHAQQLSFA
                     ELGKPAAPRHVFRRLLASPGIASKRWVYRQYDHMVRTNTLVVPGMGAGVVRVKGTTRA
                     LAMSTDCNSRFVYLDPYHGAQLAVAEAARNVACAGALPIGATNCLNFGNPQKPDVMWQ
                     FARAVEGMGAACRALDVPITGGNVSLYNETDGRAVLPTPVIGVVGLIEHADRALRRAF
                     RADGDVIVLLGESAPELGGSEYLHVMHGLIRGVPPALNLGREKSLQQLLVDAAEARVI
                     ESAHDCAEGGIAVTVAESCFDTALGATLDVPALSPLDDFSDIATLFGESASRVVVSVR
                     PGNVDRLASLARAAGVSALQIGFVGGSRISIRIAGRSVIDELLADAEQVWSNAIGSYF
                     EKQRVIA"
     gene            1234..2715
                     /gene="purF"
                     /locus_tag="VLI40_06915"
     CDS             1234..2715
                     /gene="purF"
                     /locus_tag="VLI40_06915"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HSU96943.1"
                     /translation="MLDKFRDECGVFGIFGHPEASKLTYLGLYALQHRGQESAGIASC
                     DGVQIRVSKAMGHVNDAFDDETVARLPGHMAVGHVRYSTAGESRLENAQPLVVESTHG
                     QLALCHNGNLVNGGELRDALVHAGAIFQSTSDTEVVVHLFARSRAATAEAAVIEAVTQ
                     VRGAFSFVAMTKDRLIGIRDPHGFRPLAIGKLEHPGGEAYVIASETCAMDLIGATYVR
                     DVEPGEIVVVTAHELKSFKPFAASKVSQCIFEHVYFARPDSYVFGESVNEVRTEFGRR
                     LARESGVPADVIVPIPDSGVCAAIGYSEASGIPMRMGLIRNHYVGRTFIQPQQSIRHF
                     GVKVKLNPVRSILDGKRVVLVDDSIVRGTTSRKIVRMVRSAGAKEVHMRISCPPTISP
                     CFYGVDTPRKSELIAATHTLDEIRKYLDADSVAYLSLDGLTGAVPDGRTRYCTSCYTG
                     VYPVAFPRDEAAYLQLALKLNGNGAPTPQPSPVTLLETDPVAS"
     gene            2861..3877
                     /locus_tag="VLI40_06920"
     CDS             2861..3877
                     /locus_tag="VLI40_06920"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HSU96944.1"
                     /translation="MNASRLIRRAPAAQAVPALADAVRRHPDEYARNRAFILLTAFND
                     RGTADLAKALLTDRNDRLRESVFKFFEQHPDQRLAPALLGALGTEQAEFVRPALIGAL
                     TAVDQDPQVQRALIVEAGRGLDFFRSAVIDALGRRHAAYAVDAIALITKDEGPLQQDA
                     VLAIGRIGGPKADAILGAVTGATPEVQMTLRAAACLAGKNCDMHVKTLNDVAGRDRER
                     PAVIRAAIAGLAAIAESGNVAALRALLDLQMRVPALHDDVALGFSSFALRRPSTVLDW
                     LDTAAEPTRNVAVALLKDGFDSLEDDYAEEQFFAATRAMYWQAPDASPTRTLMAAVIQ
                     RLDF"
BASE COUNT          704 a         1239 c         1265 g          770 t
ORIGIN      
        1 aatgcgggtg aagcataggg gcgaggtagt cgcggatatc ccgaatccgt ttctgaccga
       61 cgaagcaccc gtgtatcggc gtccgatgca ggaacccgag tacctgaaac acgcacaaca
      121 gctgtcgttc gccgaactgg ggaagccggc cgcgccgcgt cacgtatttc gtcgattgct
      181 ggcgtccccc ggcatagcca gcaaacgatg ggtgtaccgc caatacgacc acatggtgcg
      241 caccaacacg ctggtggtac ctggtatggg tgccggcgtc gtccgagtga agggaaccac
      301 gcgcgcgttg gcgatgtcga ccgactgcaa cagcaggttc gtctatctgg acccctatca
      361 tggcgcccag ctcgccgtcg ccgaggccgc acggaacgtc gcgtgtgcgg gcgccctgcc
      421 gatcggcgcg acgaactgcc tgaatttcgg taatccgcag aagccagacg tcatgtggca
      481 gtttgcccgt gccgtggaag ggatgggggc agcgtgtcgt gcgctggacg tgccgatcac
      541 cggcggtaac gtcagcctgt ataacgaaac tgacggacgg gcggtgttgc cgaccccggt
      601 gatcggtgtc gtcggcctca ttgaacacgc cgatcgagcc cttcgccggg ccttccgcgc
      661 tgacggcgat gtcatcgtgt tactcggtga aagtgcgccg gagctcggtg gaagcgagta
      721 cctgcacgtg atgcacggtc ttattcgcgg tgtacctccc gcgttgaacc tgggccgaga
      781 gaagtcgctt cagcaattgc tcgtcgatgc cgccgaggca cgggtgatcg agtcggccca
      841 cgattgcgct gaaggcggga tcgcggtgac tgtggccgag agctgcttcg atactgctct
      901 cggagcgacg ctcgatgttc ctgcgctgtc gccgttagac gatttcagcg atatcgcgac
      961 gctattcggt gaatccgcat cgcgcgtggt ggtgtccgtc aggcccggga acgtcgatcg
     1021 gctggcaagc ctcgcccgcg cggctggcgt ttcggctctt cagatcggct ttgttggcgg
     1081 aagccgcatc tctatcagga ttgcgggacg ttcggtcatc gacgagcttc tcgccgatgc
     1141 tgagcaggtg tggtcgaacg cgatagggtc gtacttcgaa aaacagcgcg tcatcgcctg
     1201 acgaggccgt acactatggg ctcacccata tccatgctcg ataagtttcg cgacgagtgc
     1261 ggtgtcttcg gtatcttcgg tcaccccgaa gcttcgaagc tgacctacct cgggctgtac
     1321 gccctgcagc atcgcggtca ggaaagcgcc gggattgcgt cctgcgatgg tgtccagatc
     1381 cgcgtgtcga aggcgatggg gcacgtcaac gatgcgttcg acgacgagac cgtcgccagg
     1441 ctgcctggcc acatggcggt tggacatgtc cgttactcga cagccgggga aagcaggctg
     1501 gaaaacgcac agccgctcgt agtggagagc acgcacggcc agctcgcgtt gtgccacaac
     1561 ggcaatctcg tcaacggcgg cgaacttcgc gacgccctgg tgcatgcggg agcgatcttt
     1621 caatcgacct ctgatacgga ggtcgtcgtt cacctgtttg cccgctcgcg ggctgccacc
     1681 gccgaggccg cagtgatcga ggccgtcacg caggttcggg gtgcgttctc gttcgtagcg
     1741 atgacgaaag accgattgat cggcatccgc gatccgcatg ggtttcgtcc cctggcgatc
     1801 gggaagctgg aacatcccgg cggcgaagct tacgtcatcg cctcagagac gtgcgcgatg
     1861 gatctcatcg gcgcaacgta tgtgcgcgat gtcgagccag gcgagattgt ggttgtcacc
     1921 gcgcacgaac tgaagtcgtt caagccgttt gcggcatcca aggtctctca gtgcatcttc
     1981 gagcacgtct atttcgcgcg acccgacagc tatgtgttcg gtgaaagcgt caatgaagtt
     2041 cgcaccgagt tcggacgacg gctggcgcgc gaatccggcg ttccggcgga tgtcatcgtg
     2101 cctattcccg actccggcgt gtgcgcggct atcggctact ccgaggcgtc cggaatccct
     2161 atgcggatgg gattgattcg caatcactac gtcggccgta cgttcatcca gccgcaacag
     2221 tcgattcgac acttcggcgt caaggtgaag ctgaatccgg tcagaagcat ccttgacggc
     2281 aagcgggtcg tactcgtcga cgattcgatc gtgcgcggaa ccacgagtcg caagatcgtg
     2341 cggatggtgc ggagtgctgg cgcgaaagaa gtgcatatgc gcatcagttg cccgccgacg
     2401 atttcccctt gtttctatgg cgtcgacacg ccgcgcaaat cggagttgat cgctgccacc
     2461 cacacgctcg acgaaatccg gaagtacctc gacgccgaca gcgtggcgta tctgagcctg
     2521 gacggtctga ccggtgcggt acctgatggc cgcacccgtt actgcacgtc ctgctatacc
     2581 ggtgtgtatc ctgtggcgtt tccgcgcgac gaagcggcgt atctccaact cgcgctcaag
     2641 ctgaacggga atggtgcgcc gacgccgcag ccgagcccgg tcacattact ggaaactgac
     2701 ccggttgcca gctgacaccg tgtctggacg caccgcactt ctgctgagtg tcatcgtcct
     2761 cgccttaggc gtgacggttg gaatcgcaca gactcccgca cccgccgcag acctcaagac
     2821 gctcatcggc aatctctcgt cgctcgacta cccgacacgc atgaacgcgt cgcggctgat
     2881 ccgccgcgcg cccgcggcgc aggcggttcc cgcccttgcc gacgccgtgc gccgtcaccc
     2941 ggatgagtac gcgcgcaatc gcgcgttcat cctgctgaca gcgttcaacg atcgtggcac
     3001 ggcggatctg gccaaggcgc tgctcactga tcggaacgat cgattacgtg agagcgtgtt
     3061 caaattcttc gagcaacatc ccgatcagcg actcgcgccg gcattactcg gagcgctggg
     3121 gacggaacag gctgaattcg tccggccggc tctgattggc gcgctgacgg ccgtcgatca
     3181 ggacccgcag gtgcagcgcg cgctgatcgt agaggccggt cgcgggctcg atttcttccg
     3241 gagcgccgtt atcgacgcac tcgggcgtcg ccacgcggcg tatgcggtgg acgccatcgc
     3301 cctcatcaca aaggacgagg gtccactgca gcaggacgcc gtgctggcga ttggtcgtat
     3361 tggcggtcca aaggcggacg cgatcctggg cgctgtgacc ggagcaaccc cagaggttca
     3421 gatgaccttg cgagccgccg cctgtctggc cggcaagaac tgcgacatgc atgttaagac
     3481 gctcaatgac gtcgccgggc gcgaccgtga gcggcccgcg gtgatccgtg cggcaatcgc
     3541 cggcctcgcg gcgatcgccg agtcgggcaa tgtcgcggca ctgcgcgcgc tgctcgactt
     3601 gcaaatgcgt gtaccggcac tgcatgacga tgtggcgctc ggcttttcct cgtttgcgct
     3661 ccgtcgacct tccacggtgc tcgactggct cgacaccgca gctgaaccga cgcggaatgt
     3721 cgccgtcgct ctgctaaaag acggcttcga ctccctcgag gatgactatg ccgaggagca
     3781 gttcttcgcc gcgacccgcg ccatgtactg gcaggcgccc gacgcctcgc cgactcgcac
     3841 gctgatggcc gcggtcattc agcgactcga cttttgatgg actacaaggc ttccggcgtc
     3901 gacattgacg ctggcaacga aacagtccga cgcattcgcg gccttgctcg ctcgacgttt
     3961 acacccggcg tgctctcc
//
LOCUS       DATIMD010000305         3656 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2425096, whole genome shotgun sequence.
ACCESSION   DATIMD010000305 DATIMD010000000
VERSION     DATIMD010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3656
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2425096"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1112
                     /locus_tag="VLI40_06925"
     CDS             <1..1112
                     /locus_tag="VLI40_06925"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSU96945.1"
                     /translation="LHPAPPSEGMQTVDESAPQRTIEAVLAANEDLMAGFTAERDMGT
                     EGAGPADAAVRNAIETGEIPGPRLRISGMAISILGGHEDAIGFNPEQQVLGNADYAND
                     SEQLIETIRKQHKEGATFFKIYETGSDQMVPSGSAPCLGNPICTQLGIGEQAGDPEFW
                     QFHTPYQYTLDELKAAVAEAARLNTNIGVHCQGEPAARFAVEAGVSAIDHATQLSQGT
                     MTLMKQKDIPAVPTFVIFKYFADHAPDSAAAKREYAMLDYKIHEFKRQVAAGVPMAVG
                     SDVGPFPHGTQAEEFELMVKYGMTPLAVLQADYLNGARILMWQNRVGQLKQGYLADVV
                     AVPGNPLQDITAVEHVQFVMKGGVVYRGEGAENGK"
     gene            complement(1130..2737)
                     /locus_tag="VLI40_06930"
     CDS             complement(1130..2737)
                     /locus_tag="VLI40_06930"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSU96946.1"
                     /translation="MRSRLLVPIIVATLATTLIVPRQARAQAGQDNPSGDSVVQRIYE
                     QGMHHSEASRFAQTLMDSIGPRLTGSAANRAANDWLLGVYKSWGVDARNEKYGTWRDW
                     TRGKSTLELMSPRYRVLEATMHAWSGATPAGGVTADVVIVPAAAEIADSAGFARWLQT
                     VKGKLVLISEPQTTCRPDADIHTWADSATYQHAMSQRDSAAKDWRARFTAAHVSIREL
                     PALLAHAGVAGVLSNSWSHGWGVDKIQSSRAAGTPSFDVSCEDYSLLARLVSNGQHPR
                     VHAIADAKLAPTESPVFNTIAEIKGSEKPNEYVMLSAHLDSWDSGSGATDNGTGTITM
                     LEAMRILKTVYPHPKRTILVGHWSGEEEGEIGSSAFAADHPEVLKGLQALFNQDNGTG
                     EIDSVQTNGFIDAAPSLARWMSRMPADMTRNVTLMLPGVAHDESTDSDAFDCRGAPGF
                     FLTSSDWSYTDYTWHTNRDTYDKINFDNVKRNATLVALFAYEASEDPSFVSRTRRVPP
                     VNPSTNQPMEVPACSMPPRSWAASQRR"
     gene            2883..>3656
                     /locus_tag="VLI40_06935"
     CDS             2883..>3656
                     /locus_tag="VLI40_06935"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HSU96947.1"
                     /translation="MARPYVEQGVAVKAIAGLVVASLVLHATVIAVTPFGIHRDEFLY
                     FSMGNHLRLWHMDFPPAIAMLGALSQGLFGHTIATARVFPAIEGTLLMVLAALTAREL
                     GGGRFAQGLAAFAVFASPMFERNATLFQPVVLDQICWTLALFAIARVARVRADGGNTK
                     IPWLAFGVAIGLGLLCKFSILFLCVSVLAAVLLTPMRRKLLTPWPWLAVVIMLVLGSP
                     SIVGQITLHFPVVAQMRDLGATQLVHVTASEYIGTQLLNI"
BASE COUNT          661 a         1114 c         1183 g          698 t
ORIGIN      
        1 tcctgcatcc ggcgcctcca tcggaaggaa tgcagactgt ggacgaatcc gcgccgcagc
       61 gcacgatcga agccgtgctc gcagcgaacg aggacctgat ggcaggcttc accgccgagc
      121 gcgacatggg gacggagggc gcggggccgg cggacgcagc tgtgcgcaac gcgatcgaga
      181 caggcgagat tcccgggccg cggctccgca taagcgggat ggcgatctcg atcctcggcg
      241 gacacgaaga cgcgatcggc ttcaatcccg agcagcaagt actcggcaat gcagactacg
      301 ccaacgattc cgaacagttg atcgaaacga tccgcaagca gcacaaggag ggagcgacct
      361 tcttcaagat ctacgaaacc ggatcggatc agatggtgcc cagtggctca gctccgtgcc
      421 tcggcaatcc gatctgcacg cagctcggaa tcggcgagca ggccggcgat cccgagttct
      481 ggcaattcca cacgccttac cagtacacgc tggacgagct gaaggcggca gtcgccgagg
      541 cggcgcggct caataccaac atcggcgtgc attgccaggg cgagccagcg gcgcgatttg
      601 ccgtggaggc tggagtgtcg gcgatcgatc acgcgacgca gctcagtcag ggcacgatga
      661 cgctgatgaa gcagaaagac attcccgcgg tgccgacgtt cgtcatcttc aagtacttcg
      721 ccgatcacgc gcccgattcc gcggctgcga aacgcgaata cgcgatgctg gattacaaga
      781 tccacgagtt caagcggcag gtagccgccg gagttccgat ggcggtggga tcggacgtcg
      841 gcccgtttcc gcacgggacg caggcggagg aattcgagtt gatggtgaag tacggcatga
      901 ctccgcttgc cgtgcttcaa gccgattatc tgaacggcgc gcggattctc atgtggcaga
      961 accgtgtggg gcagttgaaa cagggctacc tcgcggacgt cgttgcggta ccgggaaatc
     1021 cactgcagga catcaccgcc gtggagcacg tgcagttcgt gatgaagggc ggggtggtgt
     1081 acaggggcga aggggctgag aacgggaagt agaaggacgc ggccttgggt caccgccgct
     1141 gcgatgccgc ccagctccgc ggcggcatgg agcacgccgg cacctccatc ggctggttcg
     1201 tgctcggatt cacaggcggc actctgcgcg ttcttgagac gaaactcgga tcctccgacg
     1261 cctcgtacgc aaacaatgcg acgagcgtcg cgttacgctt cacgttgtcg aagttgatct
     1321 tgtcgtacgt gtcgcggttg gtgtgccagg tgtagtcggt gtacgaccag tcggacgacg
     1381 tcagaaagaa gccgggagcg ccgcggcaat cgaatgcatc gctgtcggtg ctctcgtcat
     1441 gcgcgacacc gggcagcatc agagtgacgt tgcgcgtcat gtccgccggc atgcgcgaca
     1501 tccagcgcgc gagcgatggc gcggcgtcga tgaaaccgtt ggtctgcacg ctgtcgatct
     1561 cgcctgttcc gttgtcctga ttgaacagcg cctgaagacc cttgagaact tccggatgat
     1621 cggccgcaaa cgccgacgag ccgatctcgc cctcttcctc gccgctccag tgaccgacga
     1681 ggatcgtgcg cttgggatgc ggatacactg tcttgagaat gcgcatcgcc tcgagcatcg
     1741 tgatcgtgcc ggttccgttg tcggttgcgc cgctgcccga gtcccacgag tcgaggtgtg
     1801 cggagagcat cacgtactcg ttcggcttct cgctgccctt gatctccgcg atcgtgttga
     1861 ataccggcga ttcagttggc gccagtttgg cgtcagctat cgcatggacg cgcggatgct
     1921 gtccgttcga cacaagccga gcgagcaggg aatagtcctc gcacgacacg tcgaatgacg
     1981 gcgtgcccgc tgcgcgcgac gattgaatct tgtcgacgcc ccagccgtgc gaccaactgt
     2041 tggagagcac accggcgacg cctgcatgcg cgagcaatgc cggaagctcg cgaatgctga
     2101 cgtgcgcggc ggtgaatcgt gcgcgccagt ccttcgctgc gctgtcacgt tgcgacatcg
     2161 cgtgctggta agtcgccgag tcggcccagg tatggatgtc ggcatcgggg cggcaggtcg
     2221 tttgcggctc gctgatcagc acgagcttgc ccttcactgt ttgcagccat cgcgcgaagc
     2281 ccgcgctgtc agcgatctcc gccgcggccg ggacgatgac gacgtcggcg gtgacgccgc
     2341 ccgctggcgt agcaccactc cacgcatgca tggttgcttc gaggacgcga tatcgcggtg
     2401 acatcagctc gagcgtgctc ttgccgcgcg tccaatcgcg ccatgtgccg tacttctcgt
     2461 tcctggcgtc cacaccccac gatttgtaaa cgcccagcag ccagtcgttg gcagcgcggt
     2521 tcgccgccga gcctgtgagt cgcgggccga tggagtccat gagcgtctgc gcgaagcgcg
     2581 acgcctcgga gtgatgcatc ccctgttcgt agattcgctg aacgacggaa tcgccgctcg
     2641 gattatcctg gccggcctgg gcgcgcgcct ggcgcggaac gatgagagtc gttgccagcg
     2701 tggcgacgat gattggaacg agaaggcgtg atcgcatgcg acaatgctag cggatcgggt
     2761 gcggtggtcg ccagtgaata ggagccggca atggcaacgg tgagtgcgtt acaaggtaca
     2821 tattgaggcg gaccgcggtt gtccggcagc tttcagaccc agtcgcatgg agtggatgca
     2881 cggtggccag gccatatgtc gaacaaggag ttgctgtgaa ggcgatcgcc ggtctggtgg
     2941 tcgcctcgct cgtgctgcac gctacggtca tcgccgtaac tcctttcgga atccatcgcg
     3001 atgaatttct ctacttctcg atgggaaatc atctgcgtct ctggcacatg gatttcccgc
     3061 cggccatcgc gatgctcggc gcgctgtcgc aggggctgtt cggacacacg atcgccaccg
     3121 cgcgcgtctt tcccgccatc gagggaactc tgctcatggt gctcgccgct ctcaccgcgc
     3181 gcgagctcgg cggcgggcgc ttcgcgcagg ggctggccgc ttttgcggtg ttcgcatcac
     3241 cgatgttcga gcgcaacgca acgctcttcc agcccgtcgt actcgatcag atctgctgga
     3301 cgctcgcgct gttcgccatt gccagggttg cgcgcgttcg ggcagatgga ggcaacacga
     3361 aaattccgtg gctcgccttc ggagtcgcga tcggactcgg gctgctgtgc aagttcagca
     3421 tactgtttct atgcgtcagc gttctcgctg ccgttctgct cactcccatg cgccgcaagc
     3481 tccttacacc atggccatgg cttgccgtag tgatcatgct cgtactcgga agcccgagca
     3541 tcgttggaca gataacgctt cactttcccg tggtcgcgca gatgcgtgac ctcggcgcga
     3601 ctcaactcgt gcacgtcacg gccagtgaat acatcggcac gcaactgctc aatatc
//
LOCUS       DATIMD010000306         4166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3582422, whole genome shotgun sequence.
ACCESSION   DATIMD010000306 DATIMD010000000
VERSION     DATIMD010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4166
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3582422"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VLI40_06940"
     CDS             <1..283
                     /locus_tag="VLI40_06940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96948.1"
                     /translation="PLHQWVWRAPAFALLESTAESLLSLVLIFAGRERWGTGRAVFGD
                     WPAMAATTFLSRFAMVCLFALVLGGVAQFVRRREIRAERKRGHNGSPAA"
     gene            402..2210
                     /locus_tag="VLI40_06945"
     CDS             402..2210
                     /locus_tag="VLI40_06945"
                     /inference="COORDINATES: protein motif:HMM:NF006129.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-requiring protein"
                     /protein_id="HSU96949.1"
                     /translation="MIQRATTPATQPKRNVSDYVLERLGEWGVRRIFGYPGDGINGLM
                     GALRRAGDTFEFVQTAHEEIAALAASAYAKFSGELGVCVATSGPGAIHLLNGLYDAKL
                     DHQPVLAIVGQQALAGLGGSMQQEVNLRAIVEDVACYTELISSPEQVRHVIDRAARIS
                     LGDRGVSVIILPHDVQRMKPVDQPEHKHGRAHSGAGYAAPRMIPRDEDLRRAADVLNA
                     GNRIAMLVGSGALAATDEILQTAELLGAGVAKSLLGKAAVPDDVPYVTGSVGWLGTEP
                     SNRMMKECDTLFMVGSSFPYTEYLPKEGQARGVQVDIDPASLSLRYPMEVSLSGDSVE
                     TLRALIPLLQRKTDRKWREEIEQNVREWWQAVDQRAHAPAPPLNPKLPVWEMAQRLPN
                     DCIITADCGSSTVWVARDVRIRRGMMFSLSGTLATMGGALPYALAAKFAHSERTVFAV
                     VGDGAMQMNGISVLIDIAKYWERWRDPRLIVLVMNNRDLNYVTWEQRVMEGEPKFEGS
                     QNLPDFQYAKYAELLGLRGIRVERPDQVAGAWDEALHATRPTVIEAVVNADVPPLPPE
                     LTTEQEEHLATALDAGDPDAEWVEVQLVEQGVHGAS"
     gene            2276..2692
                     /locus_tag="VLI40_06950"
     CDS             2276..2692
                     /locus_tag="VLI40_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrxA/BrxB family bacilliredoxin"
                     /protein_id="HSU96950.1"
                     /translation="MYDERLVTPMRAELTRLGVEEMRTAAEVDAKLKDSKGTTLVVVN
                     SVCGCAARNARPAVAKAITNAKKPDALTTVFAGQDVDAVQRARSYFLGYPPSSPQIGL
                     LKDGKIVYMLERHQIEGRSADDIATDLTHAFDQYCA"
     gene            3063..3386
                     /locus_tag="VLI40_06955"
     CDS             3063..3386
                     /locus_tag="VLI40_06955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96951.1"
                     /translation="MYTKLVAPDLSLLRPFAFRMVPLWLIIHMGLAWASRGETILLSP
                     LATGGMMIIGATVGILDGRRRHELLFLRNLGVDPVFVGLVCAMTIGAAELLATASIVP
                     LRGMF"
     gene            3452..4129
                     /locus_tag="VLI40_06960"
     CDS             3452..4129
                     /locus_tag="VLI40_06960"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSU96952.1"
                     /translation="MRVNAGQVVGLLGRMGEGKSTLLKICAGLVPPDSGWTSFVGVQY
                     FRSRLSTLAASGLYYLADADNLASTRTLRDHFRAVCRRYGGGDQDEVIELLKLDSLLD
                     ISPAALSGGEQRRAALGVAMLRQPICLLTDEPFRGIDPLTAELTGAAFRRLAATGCAV
                     VLTGHEVRTLVPYLDRVVWMTSGTTYELGTVASAWNHEAFQREYLGPLAGARQDSTVF
                     GAGAGTE"
BASE COUNT          760 a         1239 c         1373 g          794 t
ORIGIN      
        1 cccgctgcat caatgggtct ggcgcgcgcc ggccttcgcg ctgctggaat cgacagccga
       61 atcactactc agcctcgtgc tcatcttcgc cggccgcgag cgatggggca ccggccgcgc
      121 ggtgttcggc gactggcccg caatggccgc gaccacattc ctcagccgct tcgcgatggt
      181 ctgtctgttc gccctcgtac tcggcggcgt cgcgcaattc gttcggcgcc gcgagatccg
      241 ggccgagcga aaacgcggcc acaacggcag ccccgccgca tagacaactg gcccggcaac
      301 ttcccaggcg gttgcctggg caacaaggat cgcacgaccg agcacgggac tggtagtcgg
      361 aaccgccata tccgggaaca cttcgtgccg cgtcccgggg catgatccag cgagcgacaa
      421 ctccggccac acagccaaag cgcaacgtca gcgattacgt cctcgaacga ttgggcgaat
      481 ggggagtgcg acgtatcttc ggctatcctg gcgacggtat caacggcctc atgggcgccc
      541 ttcgccgcgc aggcgacaca ttcgagtttg tgcagactgc acacgaggag atcgccgcac
      601 tcgcggcgag tgcgtatgcc aagttcagcg gcgagctcgg cgtctgtgtg gcgacgagcg
      661 gtccaggggc gatccacctc ctcaacggtc tctacgacgc caagctggac catcagccgg
      721 tgctcgccat cgtgggacag caggcgttgg ccgggttggg cggcagcatg cagcaggagg
      781 tgaacctgcg cgcgatcgtc gaggacgtcg cgtgctacac cgagctcatc tcgtcgccgg
      841 agcaggtgcg ccacgtcatc gatcgggccg cgcgaatctc gctcggcgat cgcggcgtga
      901 gcgtgatcat tctcccgcat gacgttcagc gcatgaagcc agtcgatcag ccggagcaca
      961 agcacggacg tgcgcactcg ggcgccggtt acgccgcacc gcgcatgatt ccgcgcgacg
     1021 aggatctccg ccgcgccgcc gacgtgctga acgcgggaaa caggattgcg atgctcgtcg
     1081 gttccggcgc gctcgccgcg accgacgaga tactacagac cgccgagctg ctcggagcgg
     1141 gcgtcgcgaa atcgctgctg ggcaaggctg cagtaccgga tgacgttcca tacgtcaccg
     1201 gctcggtagg atggctgggc acggagccga gcaatcgcat gatgaaggag tgcgacacac
     1261 tgttcatggt cggatcgtcg tttccgtaca cggagtacct gccgaaggaa ggtcaggcgc
     1321 gcggcgtgca ggtcgacatc gatccagcga gcctttcgct ccgctacccc atggaagtgt
     1381 cgctcagcgg cgacagcgtg gagacgctgc gcgcgctcat tccactgctg caacgcaaga
     1441 cggatcgcaa gtggcgtgaa gagatcgagc agaacgtgag agaatggtgg caggctgtgg
     1501 atcagcgcgc acatgcaccg gcgccgccgc tcaatcccaa gctcccggtg tgggagatgg
     1561 cgcaacgtct gccgaacgac tgcatcatca cggcggattg cgggtcatcc accgtgtggg
     1621 tcgcgcgcga cgtgcgcatt cggcgcggaa tgatgttctc gctctcgggc acgctcgcga
     1681 cgatgggcgg tgcgctaccg tatgcgctcg ccgccaagtt cgcgcattcc gagcgtacgg
     1741 tgttcgccgt cgtgggcgat ggagcgatgc agatgaatgg gatcagcgtt ctcatcgaca
     1801 tcgccaagta ctgggagcgc tggcgcgatc cgcggctcat cgtgctggtg atgaacaatc
     1861 gcgatctcaa ctacgtgacg tgggagcagc gagtcatgga gggcgagccc aagttcgagg
     1921 gctcgcagaa tcttccggac tttcagtacg cgaagtatgc cgagctgctg ggattgcgcg
     1981 gaatccgcgt cgagcgtccg gatcaggtcg cgggagcatg ggatgaagcc ctccacgcca
     2041 ctcgcccaac cgttatcgaa gccgtcgtaa acgccgatgt gccgccgctg cctcccgagc
     2101 tcacgaccga gcaggaggag caccttgcca cggcactcga cgctggtgat cccgatgccg
     2161 aatgggtcga ggtgcagctg gtggagcagg gggttcacgg tgcgtcgtga catggaggcc
     2221 ctctactgat tcacgtcagt agcttatctt tagtaatcac cagtgagggc tgaccatgta
     2281 cgatgaacga ctagttactc cgatgcgcgc cgagctgacg cgtcttggcg ttgaagagat
     2341 gcggaccgcc gcagaggtgg acgcgaagtt gaaggactcg aagggaacga ccctcgtggt
     2401 cgtcaattcc gtgtgcggct gtgccgcccg gaacgcacgt ccggcggtcg ccaaggcgat
     2461 caccaacgcg aagaagccgg atgcgctcac gaccgtcttc gcaggtcagg acgtggatgc
     2521 cgtgcagcgc gcgcgcagct acttcctggg ctacccgccc tcgtcacccc agatcggact
     2581 gctcaaggac ggcaagatcg tctacatgct cgagcgtcac cagatcgaag ggcgctccgc
     2641 ggacgacatc gcaaccgatc tgacgcatgc gttcgatcag tactgtgcgt aggacggagt
     2701 gggacggagt gggacggagt gggacggagt agggacggag tagggacgga gtagggacgg
     2761 actccgtgtg aagtcgctca gtgcaccacg attggggacg gactccgtcc ccgaagcgaa
     2821 gaagggccgg ctcatcgccg gcccttcttt ttggacgctg agggcccgtc accccgcgaa
     2881 cgcggagcaa agcccgacgc cgtcggaatg attcccacgt ttgcaggtgt atggcttgaa
     2941 tccgtccatg acgtcatcac atgacgccgt cgtgggtgtg tcagagctac attagcgtca
     3001 gcctggcacc tgcgatcttg tcaatcaatt aatcggcgtg cgcggctctc atccatgtct
     3061 tcgtgtatac caaactcgta gcgccagatc tgtctctgct gcgtccgttc gcgtttcgca
     3121 tggtgccatt gtggctgatc atccacatgg gtctcgcgtg ggcaagcagg ggtgaaacta
     3181 ttctgctgtc gccactggcg actggcggga tgatgataat cggcgctacg gtgggaatcc
     3241 tcgatggacg tcgccgtcac gaattgcttt ttcttcgtaa cctcggcgtc gaccctgtct
     3301 tcgttgggtt ggtatgcgcc atgactatcg gagctgcaga attgttggcg acggcgtcga
     3361 tcgttccgct gcgcggaatg ttttgatggt attacgcgcc gattctatcg ttaagtcata
     3421 cgcggggcga cgggtactta gttcggcatc gatgcgcgtg aacgccggac aggtcgtcgg
     3481 tttgctcggt cgaatgggcg agggcaaatc gaccctcctc aagatttgtg ctggtctggt
     3541 gccgccggat agtggatgga cgagcttcgt cggggtgcaa tattttcggt cacgcctgag
     3601 cacgttggca gcaagcggtc tttattacct ggccgacgcc gacaatcttg catccacgcg
     3661 cacgttgcgc gatcactttc gcgcggtgtg tcgacgctac ggtggtggcg atcaggatga
     3721 agtgatcgag ctactcaagc tggattcgtt gttggatatt tcgcctgccg ccctgtccgg
     3781 tggtgagcag cggcgcgcag cattgggagt tgcaatgctg cgtcagccaa tctgtttgct
     3841 caccgacgag ccgttccgtg gaatcgatcc gttgaccgca gagttgaccg gcgcggcgtt
     3901 caggcgtctg gcagcaacgg ggtgtgccgt ggtactcacc ggccatgaag tccgcacctt
     3961 ggtgccctat ctcgatcgtg tcgtctggat gacctccggt acgacttacg agcttgggac
     4021 cgtggcgagc gcctggaacc atgaggcatt ccagcgcgaa tatctcggac cgctcgccgg
     4081 cgctcgtcag gattcgacgg tttttggggc aggagcgggg acggagtagg gacggactcc
     4141 cttagcgaat tcacacggag tccgtc
//
LOCUS       DATIMD010000307         2121 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3869043, whole genome shotgun sequence.
ACCESSION   DATIMD010000307 DATIMD010000000
VERSION     DATIMD010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2121
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3869043"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            119..>2121
                     /locus_tag="VLI40_06965"
     CDS             119..>2121
                     /locus_tag="VLI40_06965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96953.1"
                     /translation="MRRRTVAATAVGVIVALVVLIAGAVFIVTQTDWGRKKVGDYVIG
                     IIRHAAHGYVTVDRIDGNLLNGATITGLTITDSAHAPFVKVDTVVATYGIRDLINKRI
                     YLGDVRLVHPVIVLDRMPGGKWNYDRIFPRDTTQPPGPPGFLSWITLRNVTAVDGDIT
                     ARSPWTPSDTLKGSIRDSVIRFTLSPLARLNVQRVAGGFQKTSQFRNIYGTFPLMRLE
                     DPNDRRQIIDVSSLRMTAEPLRPPPVRVTDVKGRFIVLGDSLYFNGINATLASSRLSH
                     GSGRYNFDTNDLRLRLHADTVATNDLLWIDPSIPKDGSGKLDFALDWVGLTSDYLATN
                     ASLAVAGATMSGSLGTLVTDTIAFHDTNLRFSHLDTRTIQQLFPTIVSPRQGYLTGRM
                     AARGGFGAMRIDGDVAFQDPRTGTSRVIALGTVGASKGILRATDLHLTLLPLNVALAR
                     AVDPTLPIGGTVTGKAVLNGSSATRLTATGDLIHNDVTGESHVTGSATYARGDRVPFI
                     NAALQLLPLSLATAGQFVPAAGLRGTLTGPISVTGPMRNLAVTADLTAPDGGTIAAHG
                     TVNLESRPQGYDLSLAAHLFDASQISSKAPTSLLTANVAARGAGFDPATLNATATANV
                     QTSSYDSVTVDSATVRVAAANGLLSVDTLSVHVPHGYASASGQ"
BASE COUNT          407 a          689 c          634 g          391 t
ORIGIN      
        1 gaaaggactc gtcacactcg atcaatcgcg cacgtactcg ccgacgcacg gaagtggcgg
       61 cctgaactcg ctgcttgcgc ggctcacgct gcatctgtcg atcggagagg cattctagat
      121 gcgcaggcgc accgtcgctg ctaccgcggt gggtgtcatc gtcgcgctgg tggtgttgat
      181 cgccggtgcg gtgttcatcg tcacgcaaac ggattggggc agaaagaaag tcggcgacta
      241 cgtgatcggc atcatccggc acgcggcgca cggatacgtg acagtcgaca ggatcgacgg
      301 caacttgctg aacggcgcta cgatcacagg tctcaccatc acggacagcg cgcacgctcc
      361 gttcgtcaag gtggatacgg tcgtcgccac gtacggcatc cgcgatctga tcaacaaacg
      421 gatctatctg ggtgatgtgc gcctcgtaca tcccgtcatc gtcctcgacc ggatgccggg
      481 cggcaagtgg aactacgaca gaatctttcc gcgcgacacg actcagccgc ccggtccgcc
      541 gggatttctg tcatggatca cgctgcgcaa cgtgacggcg gtggacggtg acatcacggc
      601 gcgcagtccg tggacgccaa gtgatacgtt gaagggtagc atacgagaca gcgtgatacg
      661 gttcacgctc agtccgctcg cgcgcctcaa tgtgcagcgt gtcgccggcg gattccagaa
      721 gacatcgcaa ttccggaaca tctacggcac atttccgttg atgcgcctgg aagacccgaa
      781 tgatcgtcgt cagatcatcg acgtctcgtc gctgcgcatg accgcggagc cgttgcggcc
      841 accaccggta cgtgtgaccg acgtgaaggg acgtttcatc gttctcggcg attcgttgta
      901 cttcaacggt atcaacgcta cgcttgcgag ctcccggctc tctcatggca gcggacgcta
      961 caatttcgac accaatgatc tgcgcctccg gctgcacgcg gacacggtag ccacaaacga
     1021 tctgttgtgg atcgacccga gcatacccaa ggacggatcc gggaagctcg actttgcgct
     1081 cgactgggtg ggactaacga gcgactatct cgcgacgaat gcttcactcg cggttgccgg
     1141 cgccacaatg tcgggaagcc tcggcactct cgttaccgat acgatcgcgt ttcacgatac
     1201 caacctgcgc ttcagccatc tggacacgcg caccatccag caactgttcc cgacgatcgt
     1261 atcgccgcgc cagggctatc tcacgggccg catggccgcg cgcggcggat tcggcgccat
     1321 gcgcatcgac ggcgatgtcg catttcagga tccgcgcacc ggcacgagcc gcgtcatcgc
     1381 gctcggcacg gtaggcgcga gcaagggcat cttgcgagcg accgacctgc atctgacact
     1441 actgccgctc aacgtcgcac tcgcgcgtgc tgtcgatccg actctgccga tcggcggaac
     1501 ggttaccggc aaggcggtgc tcaacggttc cagcgcaaca cgtctcaccg caaccggtga
     1561 cctgatccac aacgatgtga ctggcgaatc gcatgttaca ggcagcgcga cgtacgcgcg
     1621 cggtgatcgc gtgccattca tcaatgccgc tctgcagctc ctgccgctct cgcttgccac
     1681 tgctggtcag ttcgtgccag cggccggact tcgcggcaca cttaccggcc cgatttccgt
     1741 gaccggaccg atgcggaatc tcgccgtcac cgcggatctg acggcaccgg acggcggcac
     1801 gatcgccgcg catggaacgg tgaatctcga gtctcgcccg caaggctatg acctcagcct
     1861 tgcggcccac ctgttcgacg ccagtcagat cagcagcaag gcaccgacat cgctgctcac
     1921 agccaatgtc gcggcgcggg gggccggctt cgatccggca acgctgaatg caacggcaac
     1981 cgccaatgtg cagacatcga gctacgacag tgtgaccgtc gattccgcga ctgtacgagt
     2041 agcagcggcg aacgggcttc tgtcagtcga cacgctctcc gttcacgtcc cgcacggcta
     2101 cgccagtgcg tcgggtcagt t
//
LOCUS       DATIMD010000308         3770 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_407821, whole genome shotgun sequence.
ACCESSION   DATIMD010000308 DATIMD010000000
VERSION     DATIMD010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3770
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407821"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1394)
                     /locus_tag="VLI40_06970"
     CDS             complement(<1..1394)
                     /locus_tag="VLI40_06970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU96954.1"
                     /translation="MAVKEKIDRTASHYDAENIQVLKGLEAVRKRPGMYIGSTSATGL
                     HHLVYEVVDNSIDEALAGHASEISVTIHKDDSITVIDDGRGIPVDVHPTEGLPGVELA
                     LTVLHAGGKFDKNSYKVSGGLHGVGVSVVNALSSQLKVWVQRDGKIYYMDFNRGTTVT
                     KLKVVGTVPKNNTGTKTWFKPDELIFTDLVYKYDTLANRMRELAYLNKGVSITLTDER
                     VGQEKAETFLARGGLQEMVAYLNARTKPLHPEVVYIDTTHDDIGIEIAFQYNDGYNEN
                     VFSFVNNINTHEGGTHLTGFKSGLTRVINQYLSRSNLNKKDKESTLSGDDVREGLTAV
                     LSVKVHEPQFEGQTKTKLGNSEVEGAVKSVMNDLLNRYLDEHPKVANIIIDKALSASR
                     AREAARKARDLTRKKSALDVGNLPGKLADCSLSDPVLCELYLVEGDSAGGSAKMGRNR
                     NFQAILPLRGKIINV"
     gene            complement(1541..1858)
                     /locus_tag="VLI40_06975"
     CDS             complement(1541..1858)
                     /locus_tag="VLI40_06975"
                     /inference="COORDINATES: protein motif:HMM:NF017103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HSU96955.1"
                     /translation="MMSDRKRTPERISDALSFYLKEAGLDVRMVQSAVVPEWADLVGR
                     DIAAVTEPLFVTPDGSLFVAVRTNAWMTELQLMEPQLVRALNTDPSRPRVRKLRFQLA
                     RPA"
     gene            complement(1845..2957)
                     /gene="recF"
                     /locus_tag="VLI40_06980"
     CDS             complement(1845..2957)
                     /gene="recF"
                     /locus_tag="VLI40_06980"
                     /inference="COORDINATES: protein motif:HMM:TIGR00611.1"
                     /note="All proteins in this family for which functions are
                     known are DNA-binding proteins that assist the
                     filamentation of RecA onto DNA for the initiation of
                     recombination or recombinational repair; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication and repair protein RecF"
                     /protein_id="HSU96956.1"
                     /translation="MALLDRLSIRDFRNVARAELAFPADGVVIIGDNGQGKTNILEAI
                     YYFQLLRSVRGARDTDLVRFGASAFHLHATTVTNGEHEISAAFGRGRKRVIVDGAEAK
                     RLSGALGSLPAIVISPRDVALVSGSPSERRRFLDVALALTSPRYLNALQQYRAALARR
                     NAALRGVARGVQSDESVAAWEPALAVNGAVLLAERVAWMDQHEPEYRRLTAAIGEPEP
                     MTMRYVTSIANPRDAEDELSDTLARKRTLDIRRGLTHAGPHRDDVALQIGGHDLRTFG
                     SGGQQRTAAITLRLLEAETLKAHAGTDPLLLLDDPFAELDVRRSAHILALLQEAVTGQ
                     TILTVPRAGDIPPNLSRLARWHIAGGAIAAGGDDVR"
     gene            complement(3000..>3770)
                     /locus_tag="VLI40_06985"
     CDS             complement(3000..>3770)
                     /locus_tag="VLI40_06985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HSU96957.1"
                     /translation="DFITFEVADRIATITVNRPDKLNALNSGTIAELGAAIDDARVRQ
                     DVGGVILTGAGRAFIAGADISELQGQSPFVAKGRSRAGQEVFRRYEMCPKPVIAAVNG
                     FALGGGCEIAMACHVRIASEHAKFGQPEVKLGILPGYGGTQRLPRLVGKGRALQLLMT
                     GEMIDAEEALRIGLVNRVVHAAELLGAAQIMLKQIMQNAPLAVALSIEAVDRGLGMTL
                     DEGLTLEANHFGLLAATDDMKEGMSAFLEKRTPGFNGR"
BASE COUNT          658 a         1181 c         1180 g          751 t
ORIGIN      
        1 acgttgatga tcttgccgcg cagcggaagg atcgcctgga agttgcggtt gcgccccatc
       61 ttggcggagc caccggcaga gtcaccctcg acgagataca gctcgcagag tacagggtcg
      121 ctgagtgagc aatccgcgag cttgcccggg aggttgccga cgtcgagcgc gctcttcttg
      181 cgagtgagat cgcgtgcctt gcgcgcggct tcacgcgcac gcgacgcgga cagcgccttg
      241 tcgatgatga tgttcgcgac ctttggatgc tcgtccaggt aacggttgag cagatcgttc
      301 atcaccgact tgaccgcacc ctcgacttcc gagttgccga gcttggtctt ggtctgacct
      361 tcgaactgcg gctcgtggac cttgacggac agaacggccg tgagcccctc gcgcacgtcg
      421 tcgccggaga gcgtcgactc cttgtccttc ttgttgagat tgctgcggct caggtactgg
      481 ttgatgacgc gcgtcagacc ggacttgaag ccggtgaggt gcgttccacc ctcgtgcgtg
      541 ttgatgttgt tgacgaagga gaaaacgttc tcgttgtaac catcgttgta ctggaaggcg
      601 atctcgatgc cgatgtcgtc gtgcgtggtg tcgatgtaga cgacttcggg atgaagcggc
      661 ttggtgcgcg cattgagata cgccaccatt tcctgcagtc cgccgcgggc aaggaatgtc
      721 tccgcctttt cctgtccgac acgctcgtcg gtcagcgtga tgctgacacc cttgttgagg
      781 tatgccagct cgcgcatgcg attggcaagc gtgtcgtact tgtagacgag atcggtgaat
      841 atcagttcgt ccggcttgaa ccaggtcttg gtgccggtgt tgttcttggg gaccgtgccg
      901 acgaccttga gcttggtaac ggtcgtgccg cggttgaagt ccatgtagta gatcttgccg
      961 tcacgctgga cccagacctt gagctgcgaa gacagggcgt tcacaaccga gacgccgact
     1021 ccgtgcagac cgccggaaac cttgtagctg ttcttgtcga acttgccgcc ggcgtgcagc
     1081 acggtcagcg ccagctcgac accgggcaga ccttcggtcg gatgaacgtc cactggaatg
     1141 ccgcgaccgt cgtcgattac ggtgatcgag tcatccttgt gaatcgtgac cgagatctcg
     1201 ctcgcatgtc ccgcgagagc ctcgtcgatg gagttgtcga ctacctcgta gacgaggtga
     1261 tgcagacccg ttgcggatgt cgatccgatg tacatgccgg ggcgcttgcg aaccgcctcc
     1321 agacccttga gaacctgaat gttctccgca tcatagtgcg aagccgtgcg atctatcttc
     1381 tctttgacag ccatttacgc gaccaaaatt ggcgtgggac ggccaccgaa taaataccga
     1441 atgaaacggt gccgtagact ctgtaatata acccatccgg cccctgttag caagcgtcat
     1501 ggcatgctgt aagccattgt gcgacaacaa cttggcgccg tcaggccggt cgcgccaact
     1561 ggaatcgcag cttccggaca cgggggcggc tggggtcggt gttcaacgct ctcaccagct
     1621 gtggctccat gagctgcaat tcggtcatcc aggcgttggt tcgtacggcg acgaacagcg
     1681 atccgtccgg cgtcacgaag agcggctcgg tcacggccgc gatgtcgcga cccaccagat
     1741 ccgcccactc gggcaccact gcggactgga ccattcgaac atcaagcccg gcctccttga
     1801 ggtagaagct gagcgcatcg gagatccgtt ccggcgtccg tttcctatct gacatcatca
     1861 ccccccgcgg caatcgctcc acccgctata tgccatcgcg ccagcctgct cagattgggc
     1921 ggtatgtcgc ctgcgcgcgg gacggtcagg atcgtctggc ccgtcactgc ctcctgaagc
     1981 aaagcgagga tgtgcgcgct gcggcggacg tccagctccg cgaacgggtc atccaggagc
     2041 agcaacgggt cggtgcctgc gtgcgccttg agcgtttcgg cctccagcag gcggagcgtg
     2101 atggcggcgg tgcgctgctg accgccggac ccgaatgtgc gcaggtcgtg acctccgatc
     2161 tggagcgcga cgtcgtcccg gtgcggacct gcatgcgtca gcccgcggcg tatgtccagc
     2221 gtgcgcttgc gagcgagcgt gtcgctcagc tcgtcttcag cgtcccgtgg attcgcgatc
     2281 gatgtcacgt agcgcatggt catcggctcg ggctcgccga tggcggcggt caggcgtcgg
     2341 tactcgggct catgctggtc catccacgcg acacgctcgg cgagcagcac cgctccgttc
     2401 accgcgagcg ccggctccca cgcggccacg ctttcgtcgg actgaacgcc gcgcgccact
     2461 ccgcgtaacg ccgcattacg ccgtgcaagt gcggcgcgat actgctgcag cgcattcaga
     2521 tagcgcggcg acgtgagcgc cagcgcgacg tcgagaaacc gtcgccgttc actcggtgat
     2581 ccgctcacga gcgcaacgtc gcgcggcgag attacgattg ccggaagcga gccaagcgcg
     2641 ccgctcaggc gtttcgcctc cgccccgtcg acgatcacgc gcttgcgccc gcgaccgaat
     2701 gcggcggaaa tctcgtgctc gccgttcgtt acggttgttg catggagatg aaacgcgctc
     2761 gcgccgaaac gcacgagatc cgtgtcgcgc gcgccgcgaa cggagcgaag aagctggaag
     2821 tagtagatcg cctccagaat gtttgtcttc ccctgaccgt tgtcgccgat gatgacgaca
     2881 ccatcggccg ggaacgcgag ctcagctcgc gcgacgttgc gaaagtcgcg gatcgagaga
     2941 cggtcgagga gcgccattcg tgtgcgacca gcctgtgcgg cgacgcttgc gcgtctccgt
     3001 cagcgtccgt tgaagcccgg cgtgcgcttc tcgagaaacg ccgacattcc ttccttcata
     3061 tcgtcggtcg cggcgagcag tccaaagtga ttcgcctcca gtgtcagacc ctcgtcgagc
     3121 gtcatgccga gtccacggtc cactgcttcg atgctgagtg ccaccgcgag cggagcgttc
     3181 tgcatgatct gcttcagcat tatctgcgca gctccaagta attcggcggc gtgcacaacg
     3241 cgattcacca gtccaatacg cagcgcttcc tcggcgtcga tcatttcgcc agtcatgaga
     3301 agctgcagcg cgcggccctt gccaacgagg cgcgggagcc gttgcgtgcc gccataaccg
     3361 ggaaggatgc cgagcttcac ttccggctgg ccgaacttgg catgctccga cgcgatgcgc
     3421 acgtggcacg ccatcgcaat ctcgcatcca ccacccaggg cgaagccatt caccgctgca
     3481 atgacaggct tggggcacat ttcgtagcgt cggaagactt cctgaccggc gcgggagcgg
     3541 cccttcgcga cgaacggcga ctgaccctgc agctcgctga tgtcggcgcc cgcaatgaac
     3601 gcgcgtccag cgccggtgag aatcacgccg ccaacgtcct gacgcacccg cgcgtcgtcg
     3661 attgcggcgc cgagctctgc tattgttccg gagttgagtg cgttgagctt gtcggggcgg
     3721 ttgaccgtga tcgtcgcgat ccggtcggcg acttcaaagg tgataaagtc
//
LOCUS       DATIMD010000309         2022 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3583939, whole genome shotgun sequence.
ACCESSION   DATIMD010000309 DATIMD010000000
VERSION     DATIMD010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3583939"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1547
                     /locus_tag="VLI40_06990"
     CDS             <1..1547
                     /locus_tag="VLI40_06990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HSU96958.1"
                     /translation="LLLEASLELIRSGHIVAIQDMGAAGLTSSSAEMAARGDVGVTID
                     TSRVPVRETGMTPYEILLSESQERMLVVALEGHEQQVREILFKWDLTAEVIGKVIAEP
                     VYRVTEGDRVVAEFPGSALVTECPRYDVPAEEGREAIARRRIDVAAIEELAEESDATW
                     TLLKLLAAPTIASKRWAYQQYDSTVRTNTVIGPGGDAAVLRIRGTNRAIALKTDCNGR
                     YVTLDPRVGGRIAVVEAARNVACTGARPLAITNCLNFGNPTRPEVFFQFREAVAGIRE
                     ACIALDTPVTGGNVSFYNESPTGSVHPTPVIGMLGVIDSLEYITRSTFRNAGDAIILL
                     GECTDEIGGSEYLATIHGAIGGLPPACDLEGERNLITALTEAIRAGIIASAHDCSDGG
                     LAIAVAECIMADRSSMLGADIDVGAWDSLPLRAVLFGEAQGRIVVSSGAPDRVLDIAG
                     RNGVPARVIGTVTEPSEGLTIRTGGKVLKIGTERAAAAYHEAIPRIMDAAPQSAAIEE
                     TEGVKV"
     gene            1548..>2022
                     /locus_tag="VLI40_06995"
     CDS             1548..>2022
                     /locus_tag="VLI40_06995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HSU96959.1"
                     /translation="MCGVFGIFGDDRAASLTQLGLYSLQHRGQESWGMVSVSPEGVAR
                     ATRAMGLISEASARHAPLDARLAIGHTRYSTAGSSTIENAQPILARSRDGHIAIGHNG
                     NLTNATELRRDLENEGSIFSSTIDSEVIVHRIAKAADGAPEARLAAALGPVEGAYS"
BASE COUNT          401 a          605 c          653 g          363 t
ORIGIN      
        1 agctgctgct cgaagcgagc ctcgagctga ttcgcagcgg ccacatcgtc gcgattcagg
       61 acatgggcgc cgcaggcctt acatcgtcat ccgcggagat ggcagcgcgc ggtgacgtcg
      121 gcgtgacgat cgatacgagc cgcgtccccg ttcgcgaaac gggaatgaca ccgtacgaga
      181 ttctgctcag tgaatcgcag gagcggatgc tggtcgtcgc acttgaaggc cacgagcaac
      241 aggtgcgcga gattctgttc aaatgggatc tcactgccga ggtgatcggc aaggtgatag
      301 cggagccggt ttatcgtgtc accgaaggag accgcgtcgt cgcggagttt cccggatccg
      361 ctctcgtcac ggagtgcccg cgctacgacg tccccgccga ggagggacgc gaggcgatcg
      421 cgcgacgccg catcgacgtt gccgcaatcg aagagctggc cgaagaaagc gacgcaacat
      481 ggacgctgct caagcttctg gcggcaccaa ccatcgccag caagcgttgg gcatatcaac
      541 agtacgactc gaccgtgcgg acaaatacgg tgatcgggcc cggtggagac gcagcagtgc
      601 ttcgaatccg tggtaccaat cgggcgatcg cgctcaagac cgattgcaac ggacgttacg
      661 tcacgctcga tccgcgagtt ggcggtcgca tcgctgtcgt cgaagcggcg cgcaacgtcg
      721 cctgcacggg cgcgcgtccg ctcgcaatca ccaattgcct caatttcgga aacccgaccc
      781 gtccggaagt gttctttcag ttcagggagg ctgtcgccgg aatccgggaa gcgtgcatcg
      841 ctctcgacac tccggtcaca ggcggcaatg tctcgttcta caatgagagc ccgaccggca
      901 gcgtccatcc cacgccggtg atcggtatgc ttggtgtaat cgattcgctc gagtacatca
      961 cacgttcgac gtttcgtaat gccggagatg caataattct cctgggtgag tgcacggatg
     1021 agatcggcgg aagcgaatat ctggcgacga tccatggtgc gatcggcgga ttaccgcccg
     1081 cttgcgatct cgagggcgaa cggaatctca tcaccgcgct caccgaggct atccgggcgg
     1141 gaatcatcgc gtctgcgcac gactgcagcg atggtggtct ggcgattgct gtcgccgagt
     1201 gcatcatggc agatcgcagc agcatgctcg gcgccgacat cgacgtcggc gcgtgggatt
     1261 cgctgccact ccgtgcagtt ctgttcggag aggcgcaggg acgcatcgta gtgtcatctg
     1321 gcgcacccga ccgcgttctg gatattgcgg gccgaaatgg cgtgcccgcg cgggtgatcg
     1381 gcacagttac cgagccgtcc gaaggtctta caatccgtac cggtggcaag gttctgaaaa
     1441 ttggaaccga gcgggccgct gcggcgtatc atgaggcgat cccgcgcatc atggacgcgg
     1501 cgccccagag cgccgcaatc gaagaaactg aaggagtgaa ggtctagatg tgtggtgtgt
     1561 ttggaatttt cggcgatgac cgcgcggcat cgctgaccca gctcggactg tattcgctgc
     1621 agcatcgcgg acaggagtcg tgggggatgg tatcggtaag tccggaaggc gtggcccggg
     1681 cgacacgcgc gatgggcctc atctccgaag caagcgcgcg acatgcgccg ctcgacgcgc
     1741 ggcttgcgat cggccatacc cgctacagca cggccggaag ctcaactatc gagaacgcgc
     1801 agccgatact tgcgcgctcg cgcgacggcc atattgcaat cggccacaac ggaaacctca
     1861 ccaacgcaac cgagctgcgc cgcgatctcg aaaatgaagg atcgatcttt tcttcgacga
     1921 tcgattccga agtgatcgtg catcgaatcg ccaaggcagc cgatggcgct cccgaggctc
     1981 ggctggccgc tgcgctcggg ccggtcgagg gggcatactc cc
//
LOCUS       DATIMD010000310         3782 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4743251, whole genome shotgun sequence.
ACCESSION   DATIMD010000310 DATIMD010000000
VERSION     DATIMD010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3782
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4743251"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1153
                     /locus_tag="VLI40_07000"
     CDS             <1..1153
                     /locus_tag="VLI40_07000"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HSU96960.1"
                     /translation="VPGDIAFVALLFALFVVPKALQRYRLPSAITSLLMGAGATALGL
                     FHNDPTLHLLSTFGIVALFLFAGLEIDGHELRRQASPLIVHGIVWSVVLAVGSAIAAF
                     GFGFATRPAVLIALALLTPSTGFILSSLSGFGLLDAERFAVKTYVIGSELLALMVLFF
                     VLQSTSLGRLAFAVAAMIGVVTIIPLMFRLFARLVAPHAPRSEFAFLLMVAIVCAYAT
                     TRLGVYYLVGAFLVGVAAQRFRSELPAMSSEKMVDALESFGSVFIPFYFFHAGTEIVR
                     EQITTRAIVVGLILIALLIPVRIGITVLQRRFFLKDSTAVARRIGIALVPTLVFTLVI
                     VDILNTNFGIEKYILGALVLYTVINTSIPAFVLHSAPPEFENVEAADIV"
     gene            complement(1493..3103)
                     /gene="pal"
                     /locus_tag="VLI40_07005"
     CDS             complement(1493..3103)
                     /gene="pal"
                     /locus_tag="VLI40_07005"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HSU96961.1"
                     /translation="MLSKRWSVCAAAALLYGGVAAAQQPGTLLLGGFGQYTIFDGSLK
                     TGGTTGAGITDNKVGFGGRIGAFITPHWDVEAEGSYTTAATNGPADMKYGPVAARLVY
                     GLPIFTRTSLLIGAGGVLSPFHNDVAGPGNYYTYRYGATGDIGLRVMLGDMWALRGDA
                     IGDYAPSSPSMTNYRFQAGLEVMPDFMALMGKGATAPAHFDWWDDQPQPQPGTVELKG
                     FGSWNHYDSKLGFDTGFSNSIGYGAGLGVFLTPNWEVEGDGSYVGPKAATTQGPPVGT
                     KYDNGNFSLRLNYNIPVFARSQFIIGAGAVRSSFHRSDNVPATWTSYAYGPEGLVGFR
                     LGVANRIAVRVDGVANYLMGDFKTTNFGVRAGLSFMLGGASRTVIDTTHVPPPPPPPP
                     PPPPPPPPPPPPPPPPPPVVVDSTKITASIYFDFDKSDIRTDAQATMDAKIPYLQANP
                     GMRIRIEGNTDERGSDEYNLALGQRRAASAKKYLVDHGIDAGRIDIVSYGEERPACTD
                     HNETCWQQNRRDDFRILVIGSDSIKAPQ"
     gene            complement(3416..>3782)
                     /locus_tag="VLI40_07010"
     CDS             complement(3416..>3782)
                     /locus_tag="VLI40_07010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96962.1"
                     /translation="MLTGGTLEFAAPEQLLGEAQTSSVDCFSLAAVVAFVLTGELPFR
                     GNDVQAILAHQLGERTDLSELPAPIEEWLRKGLAPRPSDRFADAAEMRLAWRTAASAA
                     LKRERALRWWRRLLPLGRR"
BASE COUNT          711 a         1147 c         1147 g          777 t
ORIGIN      
        1 ggttcccggc gacattgcat tcgtggcgct gctgttcgcg ctcttcgtgg tgccaaaggc
       61 gctgcaacga taccgcctcc cgagcgcaat cacgagcctg ctcatgggcg caggcgcaac
      121 ggcgctgggc ctgttccaca atgatcccac cctgcacctg ctgtctacgt ttggaatcgt
      181 ggcgctgttc ctctttgcgg gcctcgagat cgacggccac gagttgcgaa gacaggcttc
      241 cccactcatc gtgcacggca ttgtctggtc cgtggtgctc gcagtcgggt ccgcgatagc
      301 cgcattcgga tttggcttcg ccacgcgtcc cgcggtactg atcgcgctcg cactgctcac
      361 accatcgacc ggattcatac tctcctctct gtccgggttt ggcctgctgg acgccgagcg
      421 gttcgccgta aagacctacg tcatcggatc cgagctgctc gcactgatgg tgctgttctt
      481 cgtgctgcag tcaacctcgc tcggcagact cgctttcgcc gtggccgcga tgattggagt
      541 tgtcaccatc atcccgttga tgttccggct ttttgcgcgg ctggttgcgc cgcacgcgcc
      601 gcgctcggaa ttcgcgttcc tgctgatggt cgcgatcgta tgcgcgtatg caacgacacg
      661 actgggcgtc tactacctgg tgggtgcgtt cctcgttgga gtcgcggcac aacgctttcg
      721 atcggagctt cccgcgatgt cgtcggaaaa gatggtcgat gcgctcgagt cattcggatc
      781 ggtattcata ccgttctact tttttcacgc tgggacggag atcgtgcgcg agcagatcac
      841 gacacgtgcg atcgtcgtcg ggctcatact gatagcgctg ctgattccgg tccgcatcgg
      901 cataacggtg ctacagcgca gattcttcct caaggactcg acggcggtcg cgcgacggat
      961 cggaattgcg ctcgtgccga cgctggtgtt cacgctcgta atcgtggaca tactcaatac
     1021 caatttcggt atcgagaaat acatactcgg cgctctggtc ctgtacacgg tgatcaatac
     1081 aagcatcccg gcattcgtcc ttcactccgc gccgccggag ttcgagaacg tggaagcggc
     1141 agatatcgtc taggtcgcgg gggatgacga ctcgtcatcg tcgccgcagg cgggatccat
     1201 ggtcgaggct gccggcgtcg catcaatggc ctgggatatc ggcgtagcgt caatcgtcgc
     1261 aggtgtcata cccggctatc acgttcgatt gcatttgaag tgacaggcag ggatacatcc
     1321 ctgccccacc tgcgcttgcc atcacttact cctgcgacgc gtcgatgtgg aatccagttc
     1381 cggtccgtgg attcccaagg cgcggatgac aataacgacc gtcacacccc tataaagctc
     1441 aacgggcgga gcagctttcg ccgccccgcc cgttgagccc aaggagtgcc gcttactgcg
     1501 gcgccttgat tgaatcgcta ccgatcacga ggattcggaa atcatcgcga cggttctgct
     1561 gccagcacgt ctcgttgtga tccgtgcagg ccgggcgctc ttcaccgtag ctgacgatgt
     1621 cgatgcgacc cgcgtcgatg ccatgatcga cgaggtactt cttggccgag gctgcacggc
     1681 gctggccgag ggccaggttg tactcatccg agccgcgctc gtcggtgttt ccttcgatgc
     1741 ggatacgcat ccccggattc gcctggaggt acgggatctt cgcatccatc gtcgcctgtg
     1801 catccgtccg gatatccgac ttatcgaagt cgaagtagat gctggccgtg atcttcgtcg
     1861 agtcaacaac cactggcggt ggtggtggcg gcggtggcgg cggcggtggt ggtggtggcg
     1921 gcggtggtgg cggcggtggt ggcggtggtg gaacgtgcgt agtgtcgatc acagtacgcg
     1981 acgcgccgcc gagcatgaag ctcaagccag cacggacacc gaagttagtc gtcttgaaat
     2041 cgcccatgag gtagttggca acgccgtcga cacgaaccgc gatgcggttc gcgacgccga
     2101 gacggaaacc aacgagacct tctggaccat atgcatacga ggtccacgtt gcaggtacgt
     2161 tgtcgctgcg atggaagctc gagcgaactg caccggcacc gatgatgaac tgactacgcg
     2221 cgaacactgg aatgttgtag ttcaggcgca gcgagaagtt accgttgtcg tacttggtgc
     2281 cgaccggcgg accttgcgtc gtagccgctt tcggcccgac gtacgaaccg tcgccttcaa
     2341 cttcccagtt cggcgtgagg aacacgccga gaccggcgcc gtagccgatc gagttgctga
     2401 agccggtgtc gaagccgagc ttgctgtcat agtggttcca cgagccgaaa cccttgagct
     2461 cgacagtgcc gggctgtggc tgcggctgat cgtcccacca gtcgaagtgc gcaggagcgg
     2521 ttgctccctt gcccatcaac gccatgaagt ccggcatcac ttcgaggccg gcctggaacc
     2581 gatagttcgt catgctcggt gacgacggtg catagtcgcc gatcgcgtcg ccgcgaagcg
     2641 cccacatgtc acccagcatc acgcgaagac cgatgtcacc ggtcgcgccg tagcggtacg
     2701 tgtaatagtt acccggaccc gcgacgtcgt tgtggaatgg agaaagaacg ccacctgcgc
     2761 cgatgagcag cgaggtgcgc gtgaagatcg ggagcccata tacgaggcgc gccgcgaccg
     2821 gtccatactt catgtcagcc ggaccgttgg tagcggcagt ggtatacgaa ccctctgctt
     2881 ctacgtccca gtgtggtgta atgaacgcac caatgcgacc gccgaaacca accttgttgt
     2941 cggtgatccc tgcgccggtg gtgccaccgg ttttcaggga gccgtcaaag atcgtgtact
     3001 gcccgaagcc gcctagcaac agagtgccgg gctgttgcgc agccgcgact cctccgtaaa
     3061 gcaaggccgc tgcggcgcag acggaccaac gcttagataa catcttgaat ctccttggga
     3121 tggaggaagg actgaatcgg agccgattgc gctcgtcgcg cgccaactcg gcaggatgca
     3181 tgccgcccca tgtggacgcc acgcgcaggt ccgattcgcg gcctgcttac aacgcgctca
     3241 atttgcttga tcatgttaca gaatgctagc ggacacgatg atgcaataat gtcgtaaaca
     3301 cttgaattca gaatcttcgc agaaattaca cgctgtttga tcgcgagagt gcaagtctga
     3361 cgccatgacc gctccatgca tgaagtcgct catgcctgca tgtcgcagca gccgatcatc
     3421 gccgtccgag tgggagcaat cttctccacc atcgcaaggc acgctcgcgc ttgagagcag
     3481 ccgaagcggc agtccgccag gcgagccgca tttccgccgc atcggcgaag cgatccgacg
     3541 gccgcggcgc caaacccttg cgcagccact cctcgatcgg cgcaggaagc tcggacagat
     3601 cggtgcgctc tccgagctgg tgtgcaagaa tggcctggac atcgttgccg cgaaatggaa
     3661 gctcaccggt aagcacgaat gcgacgacag ctgcaagcga aaaacagtcc accgatgaag
     3721 tctgcgcttc gccgagcagt tgctccggcg cggcaaattc aagcgttccg ccagtcagca
     3781 tc
//
LOCUS       DATIMD010000311         4697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2718522, whole genome shotgun sequence.
ACCESSION   DATIMD010000311 DATIMD010000000
VERSION     DATIMD010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4697
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2718522"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..400
                     /locus_tag="VLI40_07015"
     CDS             <1..400
                     /locus_tag="VLI40_07015"
                     /inference="COORDINATES: protein motif:HMM:NF016196.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF445 family protein"
                     /protein_id="HSU96963.1"
                     /translation="LLADATTREFIATIWSDIKRKLGEYALRTEDAEFTGGKLEGAIA
                     SLAHNVLEDPALSEKLNGWIDQAVLAAVDVSRTEIAQLISGTVSAWDPQETSRRIELQ
                     IGRDLQFVRINGTIVGGMVGLLLYALTRAL"
     gene            complement(462..2921)
                     /gene="lon"
                     /locus_tag="VLI40_07020"
     CDS             complement(462..2921)
                     /gene="lon"
                     /locus_tag="VLI40_07020"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: protein motif:HMM:TIGR00763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HSU96964.1"
                     /translation="MPKPQRKEEILRSELPPTLPLMALRSTIVYPLGTIAVQMGAPEN
                     LALLKAHEEPGLIVALVVATGDHDQDADLARFVGRVGVAARIHERINLPGDTVQITMQ
                     GLRRIVIGEIVQTEPYPEAHVKPAREVAPDALEVDDLVTRVASASETLAELIDRIPDE
                     VPAILKMNISDPGRFADLAATNMNFRIADKDEVLQRLDIGQRLRFILTRLEREVARAR
                     VVEDVKRQTEIKIEQHQREFYLRQQLRAIQAELGEADPGEKDSVQLLRRVEEANLPER
                     ALAEAKREAERLRMLSPASSEYQVIRTYLDWVLSLPWHARTGADQIELKAVEEALDSR
                     HYGLSDAKERIIEYLAVRKLRGGEQHGPILCFVGPPGTGKTSLGEAIATSIGRQFYRI
                     SVGGVRDEAEIRGHRRTYVGAMPGLIIQALRRVAVRDPVMMIDEIDKMTQGGPSGDPT
                     AAMLEVLDPSQNKTFVDHYLNLPFDLSSILFICTANNLFDIPPALRDRMEIIRISGYT
                     VEEKVEIAWRYLLPRLLEDHGISDKDIQFTDETLAFIANRYSREAGLRNFERNLAAIM
                     RKRARKKAEGEEGAWIVDLAMVNEVLGVPRYNVEEAEMEPEIGAVTGLAWTATGGDLM
                     QIEALRMPGTGRLIVTGQLGDVMRESVDAAYSYVRARGKELGIPAEDFKETDVHIHFP
                     AGAIPKDGPSAGAAVTLAIASVLSRRAVRRDLAMTGEVTLRGKVLEIGGVKEKVLAAY
                     RAGLREVMMPASNEKDLRDIPDEVRHSMKFTFASDMDDVLRVALLPQREAPLVDAATE
                     PDAPMQLADFAPNAAEAEARG"
     gene            3123..>4697
                     /locus_tag="VLI40_07025"
     CDS             3123..>4697
                     /locus_tag="VLI40_07025"
                     /inference="COORDINATES: protein motif:HMM:NF013591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HSU96965.1"
                     /translation="MNPVPAALIFAIVVPSIIGAQGAPLPAATGLDFRPTAAGLLNGC
                     RAAVVAARAEVAAIDATPEHTRTFANTLGRAERAGLLLADSAASYATLYVVSPDSAVR
                     EASQMCSQQIANFGVDVGADPHIYEAAVALAKSRALSDAAQRKVAELYIEQGRHAGAG
                     LDSAARARVTTLFKRLNDVQRDFAIAIAADSTTIVISADEAKGLPPQILAVLKPTDGG
                     AYIVPVSEATSGPFMSTDASSAARARYFAAEFRRGGIGNVHRVDTALALRDTLATLFG
                     FPNWAAYQLDTHMAREPQRVTSFLDQIDTKLAPKAAEELGNLAAMKRQSGDTTPFTVS
                     DVSYYNAMLRRTKYNVDPEEVRQYFPVDQVIAGVFGIYQDLLGVKFDEITPADAWAPG
                     VREFAVSDARTKKPLGWIFLDLFPRPNKYEHFATFPIRPAVYAPDGTVTRPVSAIVGN
                     WPTAAPGKPSLLSHDDVIIFFHEFGHLMAATLVHVPYPVLGTLRQDFVEAPSQMLENW
                     MWQPAVLARVSRNVTTG"
BASE COUNT          851 a         1522 c         1415 g          909 t
ORIGIN      
        1 gcttctggcg gatgcaacga cgcgtgagtt cattgccacg atctggtccg acatcaagcg
       61 caagctcggc gagtatgcac tgcgtacgga agacgcggag ttcaccggcg gcaagctgga
      121 gggagcgatc gcgtcgctcg cacacaatgt gctggaagat cccgcgttgt ccgagaaatt
      181 gaatggctgg atcgaccagg cggtactggc tgcggtggat gtgtcgcgca cggagatcgc
      241 acagctgatc tcgggaaccg tgagcgcctg ggatccgcag gaaacgtcgc gccggatcga
      301 gcttcagatc gggcgcgacc tccagttcgt gcgaatcaac ggcaccatcg tcggaggtat
      361 ggtcggcctt ctactctacg ccctcacgcg cgcattgtag cagcggcgcg tgcggacgca
      421 ggcgtctatc acgcgtgcat catgcgagca ccacgcatgt attacccacg cgcttctgct
      481 tccgccgcgt tgggagcgaa gtccgcgagc tgcatcggtg cgtcgggttc ggtcgcggcg
      541 tcgacgagcg gcgcctcgcg ttgcggtagc agcgcaacac gcagcacgtc gtccatatcc
      601 gacgcaaatg tgaatttcat cgaatgccgt acttcgtccg gaatgtcgcg caggtccttc
      661 tcgttcgacg cgggcatcat tacctcgcgc agccctgcgc gatacgcggc cagcactttc
      721 tccttcacgc caccgatctc gagcaccttg cctcgcagcg tcacctcgcc cgtcatcgcg
      781 agatcgcgcc gcaccgcacg ccggctcagc acgctcgcga tcgcgagcgt tacggcggcg
      841 cctgcgctcg gaccgtcctt tggaattgcg ccggcaggga agtggatgtg gacgtcagtc
      901 tccttgaaat cttccgcggg gatacccagt tcctttccgc gtgcgcggac gtacgagtac
      961 gctgcgtcga cggattcgcg catgacgtcg ccgagctgcc ccgtaacgat gaggcggccg
     1021 gtgccaggca tgcgcagcgc ctcgatctgc atgaggtctc cgccggtcgc ggtccacgcg
     1081 agcccggtca ccgctccgat ctcgggctcc atctcggctt cttccacatt gtagcggggg
     1141 actccgagca cctcgttcac catcgcgagg tcgactatcc aggcgccttc ctcgccttca
     1201 gccttcttgc gcgcacgctt tcgcatgatc gcggcaagat tgcgctcgaa attgcgcaag
     1261 cctgcctcgc gcgaatatcg gttcgcgatg aacgccagcg tttcgtctgt gaactggatg
     1321 tccttgtcgc tgatgccgtg atcttccagt agccgcggca acagatagcg ccatgcgatc
     1381 tcgaccttct cctcgacggt gtatcccgag atgcgaatta tctccattct gtcgcgcagc
     1441 gcgggcggaa tgtcgaagag attgttcgcc gtacagatga acaggatcga cgagagatcg
     1501 aacggcagat ttagatagtg atcgacgaac gtcttgttct gcgatggatc cagcacttcg
     1561 agcatcgcag cggtcggatc accggacggt cctccctgcg tcatcttgtc gatctcgtcg
     1621 atcatcatca cgggatcgcg cacagcgact cttcgcagcg cctgtatgat caaccccggc
     1681 atcgcgccga cgtacgtgcg acggtgtcca cggatctcag cctcgtcgcg cacaccaccg
     1741 accgagatgc gatagaactg tcgtccgatc gacgtcgcga ttgcctcacc gagcgaagtc
     1801 ttgccggtgc ccggcggccc aacaaagcag agaatgggtc cgtgctgctc gccgccgcgc
     1861 agcttgcgca cggcgagata ctcgatgatg cgctccttcg cgtcgctcag gccgtagtgt
     1921 cgcgagtcga gcgcttcttc caccgccttg agctcgatct gatcggcgcc cgtgcgcgca
     1981 tgccacggca gcgacagaac ccagtcgaga tacgtgcgaa tcacctgata ctcgctcgac
     2041 gctggcgaca gcatgcgcag tcgctcggcc tcacgcttcg cctcggcgag cgcgcgctcg
     2101 ggaagatttg cctcttcgac gcgacgcaac agctgcaccg aatctttctc ccccggatcg
     2161 gcctcaccca gctccgcctg aattgcgcgc aactgttgac gcaggtagaa ctcccgttga
     2221 tgctgctcga tcttgatttc cgtctgccgc ttgacgtcct ccacgacgcg cgcgcgcgcg
     2281 acctcgcgct cgaggcgcgt gagaatgaac cgcagccgct gcccgatgtc gagacgctgg
     2341 agaacttcgt ccttgtcggc gatgcggaag ttcatgttcg tcgcagcgag atctgcgaaa
     2401 cggcccggat cggagatgtt catcttgaga atcgccggaa cctcgtccgg aattctgtcg
     2461 atgagctcgg cgagcgtctc cgacgccgat gcaacgcgcg ttaccagatc gtccacttcg
     2521 agcgcgtccg gcgcgacctc gcgcgcaggc ttgacatgcg cttcgggata cggctcagtc
     2581 tgcacgatct cgccgatcac gatacggcgc aggccctgca tcgtgatctg tacagtatcg
     2641 cccggaagat tgatgcgctc atggatccgc gccgcgactc cgactctgcc aacgaaccgc
     2701 gcaaggtcgg cgtcctgatc gtgatcgccc gtcgccacga ccagcgccac gatcagtccg
     2761 ggttcctcgt gggccttgag gagcgccaga ttctccggtg cgcccatctg caccgcgatg
     2821 gtgccgagtg ggtagacgat ggtcgatcgg agtgccatca gcggaagcgt cggcggcagc
     2881 tccgaacgta ggatctcttc cttgcgttgc ggcttgggca tatatgggaa tctaggccga
     2941 ttccgtatcg cttgtgaagg acgcgtcatc gtccaggacg gacgagaacg aaaatcgtct
     3001 gaaggatcct ctcgtgggat atcccggcgg ggtcgctaaa accttcacca attgcccctt
     3061 gcgaatactc agggatggcc ggatcgttga cgcactccta cccccctaac atcatgcctc
     3121 gcttgaaccc ggtcccggca gcgttgatct tcgccatcgt cgttccgtcc ataatcgggg
     3181 cgcagggcgc gcctcttccc gccgcaacag gactcgactt tcgccctaca gcagcggggc
     3241 tcctcaacgg gtgtcgcgcc gctgtcgtgg ccgcgcgtgc ggaggttgcc gcaatcgacg
     3301 caacacccga acacacacgc acgttcgcaa atacacttgg tcgcgccgag cgggcggggt
     3361 tgctgctggc cgactcggct gcatcatacg cgaccctcta cgtcgtgtca cccgactccg
     3421 cagtgcgcga agcatcgcag atgtgttcgc aacagattgc gaacttcgga gtcgacgtcg
     3481 gcgccgatcc gcacatctac gaggcggcgg tggcacttgc gaaatcccgt gcactctccg
     3541 atgcagcgca acgcaaggtc gccgagctgt acatcgagca gggaaggcac gcgggcgccg
     3601 gactcgactc cgcggcgcgc gcgcgcgtca ccacgttgtt caagcgcctg aacgacgtgc
     3661 aacgcgactt cgcgatcgcg atcgccgcgg actccacaac gattgtcatc tccgctgacg
     3721 aggcgaaggg tttaccgccg cagattctcg cagtgctcaa gccgaccgat ggcggcgctt
     3781 acattgttcc ggtgagcgag gccacgagcg gcccgttcat gagcaccgat gcgtcgtccg
     3841 cggcgagagc gcgctacttc gccgcggaat tccgtcgcgg cggaattgga aacgtgcaca
     3901 gggtggacac cgcgctcgcc ctgcgcgaca ctctcgcaac gttattcggc tttcccaact
     3961 gggctgcata ccagctggat acgcacatgg ccagggaacc gcagcgagtc acgagcttcc
     4021 tggatcagat cgacacgaag ctcgcgccga aagcggccga agagctcggt aatctcgccg
     4081 cgatgaagcg ccagagcggc gacactactc cgttcacggt ttcggacgtc agctattaca
     4141 acgcgatgct tcgccgcacg aagtacaacg tcgatccgga agaagtccgg cagtacttcc
     4201 ccgtggacca ggtgatcgca ggagtgtttg gcatctatca ggatttgctc ggtgtgaagt
     4261 tcgatgagat cactccggcc gatgcgtggg cgccaggtgt acgcgaattc gctgtgagcg
     4321 atgctcgaac aaaaaagccg ctcggctgga tattcctgga tctctttcct cgccccaaca
     4381 aatacgagca cttcgcgaca tttccgataa ggcctgccgt gtacgcgccg gacggcacgg
     4441 tgacgcgccc ggtgtcggcg atcgtcggaa actggccaac cgctgcgccg ggcaagccat
     4501 cgctcctgag ccacgacgac gtcatcatat tcttccacga gttcgggcat ctgatggccg
     4561 cgacgctcgt acatgttcct tatccggttc ttggcacgtt gcgccaggat tttgtcgaag
     4621 ccccgtcgca gatgctcgag aactggatgt ggcaacccgc tgtactggcg agagtgtcgc
     4681 gcaacgtgac cacgggt
//
LOCUS       DATIMD010000312         1779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1856316, whole genome shotgun sequence.
ACCESSION   DATIMD010000312 DATIMD010000000
VERSION     DATIMD010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1856316"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..1277)
                     /locus_tag="VLI40_07030"
     CDS             complement(30..1277)
                     /locus_tag="VLI40_07030"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSU96966.1"
                     /translation="MPHTRTTSFQPSSRFMLAGASAAALLVAGSVACSKGGPPPTPPP
                     SQVSVLTVTPRTVEDNLEFTGQVRAYRSVQVRAQANGVIIARPFTEGAQVHVGEVLYR
                     IDPTTADAEWRSAKARLASAQATLANTQTMASRLRALLPGNAVAKQDVDNAEAQVKSA
                     SAAVDDARGSVDAAQKNLSETTVRAQIDGRIERTLLDVGARVTGPADLLTTIDVLDPI
                     YVTFRPSTDQQAQWRSDPVYARAIAPGGSARVQVTLPDGSLFPTEGRIGYIDPVVDPQ
                     TGTQEYRAQFANPRRIMLPGQFVHVALRGLSRTNAIVIPQRAVLQQMGRQSVYVVGPD
                     NKVAAREVKATTWTGNDWLIESGLAAGDRVVVDGVQKIGPGAPVQPTPYVDSASTARA
                     DSGSKPAGTRTATPSAPVKDSAR"
     gene            complement(1432..>1779)
                     /locus_tag="VLI40_07035"
     CDS             complement(1432..>1779)
                     /locus_tag="VLI40_07035"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSU96967.1"
                     /translation="REKLRRCYDNELTAFGLSRALAELMDIEGPSVVRLLDQLSASGL
                     VVRRPDPDDQRGRTLHLTPAGVELAERIKPVVERLRRQLLANASDADLETCLRVFADF
                     LAACERDGMDVTK"
BASE COUNT          298 a          581 c          579 g          321 t
ORIGIN      
        1 ggattccgca ggatcgggct tgacagcgct catcgcgctg agtccttgac cggtgcgctc
       61 ggtgtcgctg tccttgttcc agctggcttc gatcccgaat ccgccctggc tgtgctggcg
      121 gagtcgacat agggagtcgg ctgcaccggc gcgccggggc cgatcttctg cacaccgtcc
      181 actacgacac gatcgccagc ggcgaggccg ctctcgatca accagtcgtt accagtccat
      241 gtcgtcgcct tcacttcgcg cgccgcgacc ttgttgtccg gcccgacgac atacaccgac
      301 tgacgtccca tctgctgcag caccgcgcgc tgcggaatca cgatggcatt cgtgcgtgac
      361 agcccgcgta gtgcgacgtg gacgaactgg cctggaagca tgatgcgccg cggattggcg
      421 aactgcgccc gatactcctg cgttcccgtc tggggatcga ctacgggatc gatgtatccg
      481 atgcgtcctt ccgttggaaa cagacttccg tccgggagtg tcacctgcac gcgtgcagat
      541 ccgcctggcg cgatggcgcg agcgtaaacc ggatcgctgc gccactgcgc ctgctgatcg
      601 gtcgacggtc tgaacgtcac atagatcgga tccagcacat cgatggtcgt gagcagatcc
      661 gcgggtccgg ttacacgggc gccgacgtcg agcagggtgc gctcgatgcg accatcgatc
      721 tgcgcgcgca ccgtcgtctc gctcaagttc ttctgagctg cgtcgacgct tccgcgagcg
      781 tcgtcgacgg cggcactcgc ggacttcacc tgcgcctccg cgttatcgac gtcctgtttg
      841 gcgacggcgt ttccggggag aagcgcacga aggcgcgacg ccatcgtctg cgtgttcgca
      901 agcgtcgcct gcgccgacgc gaggcgtgcc ttcgcgctgc gccattccgc gtcagccgtt
      961 gtgggatcga tgcggtacag cacctctccg acgtgaacct gcgcgccttc ggtaaacggg
     1021 cgcgcgatga tcacgccgtt cgcctgagcg cgaacctgca cgctgcggta cgcgcggacc
     1081 tgaccggtaa actcgagatt gtcctccacc gtgcgtggcg tgacagtaag cactgacact
     1141 tgcgatggag gaggagtcgg cggcgggccg cccttggagc acgcgacgga gcccgcgacg
     1201 aggagagcgg cagccgaggc gccggcgagc atgaagcgcg aggacggctg aaagctcgtg
     1261 gtacgtgtat gtggcatacg tgatttattg gatctggaag acattacggg aggcaaacgt
     1321 catgcgtgca gctggcagat aagttgcgcc cgaggcgccg gccggtcgct gcgagttgtg
     1381 taccagacgc gtgcacggac cggcctaacg acccgatgtt gacgcaacgc gtcactttgt
     1441 tacatccatg ccgtcgcgtt cacacgcggc gagaaagtca gcgaacaccc gcaaacacgt
     1501 ctcgagatca gcgtcggacg cgttcgcgag cagctgccgg cgtagccgct cgaccaccgg
     1561 cttgatccgc tcggccagct ccactcccgc cggagtaagg tgcagcgtcc ggccgcgctg
     1621 atcgtccgga tcgggacgcc ggaccaccag gccgcttgca ctgagctggt ccagcaggcg
     1681 gacgacgctg ggcccctcga tgtccatcaa ctccgcgagc gcgcgcgata gaccgaacgc
     1741 ggtgagctcg ttgtcgtagc agcgacgcag cttttccct
//
LOCUS       DATIMD010000313         2386 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1566136, whole genome shotgun sequence.
ACCESSION   DATIMD010000313 DATIMD010000000
VERSION     DATIMD010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1566136"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..540
                     /locus_tag="VLI40_07040"
     CDS             <1..540
                     /locus_tag="VLI40_07040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSU96968.1"
                     /translation="MLARVGRLPSAVVACVGGGSNAMGVFSGFIADRGVRLIGVEAAG
                     EGLNTERHSASLSRGRPGVLHGALSYLLQDESGQVHPAHSISAGLDYPGVGPEHSFLH
                     DSKRAEYVAVTDSDALDAFSVLSRLEGVIPALETSHAVAWLLGTSGKWAQDDAVLLCV
                     SGRGDKDVAQVRAMLASGR"
     gene            540..2252
                     /locus_tag="VLI40_07045"
     CDS             540..2252
                     /locus_tag="VLI40_07045"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HSU96969.1"
                     /translation="MPLSPTPPLGVQLGGPRVSGDPLVSETLKTLARAVRSFQLYLPN
                     NPMHIRAIDSARSAFVALWAKMDSIELSVTETEFTYEDVPVFAETDRGGESLPWLFYK
                     DGIRSFEIRAGFEAKELARFLGALKSVRAQAGGEEDLVTLFWECDFEYMSYTYEEAGG
                     DGYAAPGAELLRGGAPAGVVDAPAENEKDAGTYGAGSSQFARISDFDSTLYFLEEQEI
                     SYLQQSIREEFAGDLRPSVAAALLDTFESESDPTVREEICGILENFMLVLLSGLQFRT
                     AAFLIRECAAATTRTEGMVPSHKQRLIDLVDRISDPTTLNQLLDALEDTHLQPPQQDL
                     VSLFAQLKPSALTPLVSHLVRSRNTELRAILEEAVTRLASSNTVDLMALIGSGDEAVS
                     LEAMRRAGDLRSPAAVAPLAHVLDGASETSRAAAVAALAQIGSPGAMQVLERGLDDTD
                     RDIRLFVVKACAERQYRPVLVRLERAIKDRLTRDGSSNEKTAFFDAYATLGGDAAVPL
                     LESILLPRGMLTRKEDPMTRASAAMALGRLGTERALDAVRKALGDKEIVVRTAATRAM
                     RGGA"
BASE COUNT          417 a          697 c          832 g          440 t
ORIGIN      
        1 atgcttgcgc gcgtcgggag attgccctca gctgtcgtag catgcgtcgg agggggatcg
       61 aacgcgatgg gagtgttcag cgggttcatc gctgaccgcg gcgtgcgtct catcggtgtc
      121 gaggcggcgg gcgagggtct caataccgag cgccactcgg cgtcgttatc gcgcggtcgg
      181 ccaggagtgc tgcacggtgc gctgagttat ctcctgcagg acgagagcgg ccaggttcat
      241 ccagcgcact cgatttccgc cggtctggat tatccgggcg tcggacccga gcattcgttc
      301 ctgcacgaca gcaagcgcgc ggaatacgtc gcggtgacgg attcggacgc actggacgcg
      361 ttcagcgtgc tgagccggct ggagggtgtc attccggcac tcgagacctc gcacgcggtt
      421 gcgtggttgc tcggtacgtc gggcaagtgg gcgcaggacg atgcggtgct gctctgcgtg
      481 agcggacgcg gtgacaagga tgttgcacag gtacgcgcaa tgcttgcgag cgggcgctga
      541 tgcctctttc tccgacaccg ccgctaggtg ttcaactcgg cggaccgcga gtgagcgggg
      601 atccgctggt atcggagaca ttgaagacgc tggcgcgcgc ggttcgctcg ttccagctgt
      661 acctgccgaa caacccgatg cacattcgcg cgatcgactc ggcgcgttca gcgttcgtcg
      721 cgctgtgggc aaaaatggac agcatcgaac ttagcgtcac cgagacagag ttcacatacg
      781 aagacgtgcc ggtgttcgcc gagacggatc gcggcggcga gagtcttccg tggctgttct
      841 acaaggatgg cattcgctcc ttcgagatcc gtgcggggtt cgaggcgaag gagcttgcgc
      901 gttttctcgg agctctgaaa tccgtgcgcg cgcaggctgg cggggaggag gacctcgtca
      961 cgttgttctg ggaatgcgac ttcgaataca tgtcgtacac gtatgaggag gcaggcggcg
     1021 atggttacgc ggctcccggc gcggaactgc tgcgcggcgg agcgccggcc ggtgtggtgg
     1081 atgcgcccgc ggagaacgag aaggacgccg gtacgtacgg cgccggctcg tcgcagtttg
     1141 cgcggatctc cgacttcgat tcgacactgt atttcctgga agagcaggag atctcgtatc
     1201 tgcagcagtc gatccgcgag gaattcgcag gcgaccttcg tccttcagtt gccgcggccc
     1261 tgctggacac gttcgagtcc gagtccgatc caacggtgcg tgaagagatt tgcgggatcc
     1321 tcgagaattt catgctcgtg ctgttgtcgg gactgcagtt tcgaacggcc gcgttcctga
     1381 ttcgcgagtg cgctgcagcg acgacccgga ccgaaggcat ggtgccgtcg cacaagcagc
     1441 gcctgatcga tctcgtggat cgaatcagtg atcccacgac gctcaatcag ctcctcgacg
     1501 cactggaaga cacgcatcta cagccgccgc agcaggacct ggtgtcgttg ttcgcgcagc
     1561 tcaaaccgag cgcgttgacg ccgctggtgt cgcatctggt gcgctcccgc aacaccgagc
     1621 ttcgcgcgat cctggaagag gcggtgacgc gactggcgag ctcgaatacc gtcgatctca
     1681 tggctctcat tggctcgggc gacgaggccg tatcgctcga agccatgcgg cgtgctggcg
     1741 atctcaggtc gccggccgcg gttgcgccac tggcgcacgt tctcgacggg gcatccgaaa
     1801 cgagtcgggc cgccgcggtg gcggcgctcg cgcagatcgg atctccgggc gcgatgcagg
     1861 ttctggagcg cgggctggat gacaccgatc gtgacatcag actgttcgtt gtgaaggctt
     1921 gcgccgagcg acagtacagg ccggtgctcg tgcgtctgga gcgcgcgatc aaggatcgtc
     1981 ttacgcgaga cggatcgtcg aacgagaaga ccgcattctt cgatgcgtac gcgacgcttg
     2041 gcggcgatgc ggcagtgccg ctgctcgaga gcatcctgct tccgcgcgga atgctgacgc
     2101 gcaaggaaga tccgatgacg cgagcgagcg ccgcgatggc actgggaagg cttggtaccg
     2161 agcgcgcgct cgacgccgtg cgcaaggcac tcggtgacaa ggaaatcgtc gtacgcacgg
     2221 cagcaacgcg tgcgatgcga ggcggcgcgt gaaccacacg atgattgacg acggcgagcg
     2281 cgaagagacc gcaaacacgc ggcgcgcagg tcgcgcactc gtcgtttcga tccatgcggc
     2341 cacgcgtgcg atgaaactgt atccgcccga gcatcaggcg gtgcag
//
LOCUS       DATIMD010000314         1993 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_988092, whole genome shotgun sequence.
ACCESSION   DATIMD010000314 DATIMD010000000
VERSION     DATIMD010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1993
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_988092"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1750)
                     /locus_tag="VLI40_07050"
     CDS             complement(<1..1750)
                     /locus_tag="VLI40_07050"
                     /inference="COORDINATES: protein motif:HMM:NF012926.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HSU96970.1"
                     /translation="MPARIEDYALIGDCETAALVSRFGSIDWLCWPRFDSGACFSAIL
                     GGPDNGRWLVAPVADDVRVRRRYRGDTMILETEFETSEGCVVLVDFMPLRDERSNIVR
                     TVIGKRGRVPMKTEIVFRFDYGSIVPWVSRLDDGSLRAIAGPDMIVIRTNVELHGEHL
                     TTVGAFTVAEGDEVSFVMTWGPSHLPAPDTVDPRRALTTTQEFWEEWASVCSYRGEWR
                     EPVMRSLLTLKSLTYRPTGGIVAAPTTSLPEEIGGVRNWDYRYCWLRDATLTLLSLMD
                     AGYYSEAEQWRDWLLRAAAGSADQVQIMYGLAGERLLREWDIPWLPGYQNSKPVRVGN
                     AAHGQLQIDVYGEVMDALHQARLGNIHESADAWQLQKSLAAHLEKIWRNPDQGIWETR
                     GAPQHFTHSKLMAWVAMDRAVKSAELCNLDGPLDRWRAVRDEIHADVCRNAFNPRVNA
                     FVQAYGSELADASVLLMPLVGFLPASDPRIRGTVECVEKHLLVDGFVLRYDSEATDDG
                     LPPGEGAFLACSFWLADNYVLLGRRDDAMRLFERLLSLRNDVGLLAEGYDPRNKRLVG
                     NFPQAFSHIALLSTAFN"
BASE COUNT          371 a          610 c          665 g          347 t
ORIGIN      
        1 ggttgaacgc ggtgctgagc agcgcgatgt gggagaacgc ctgcgggaaa tttccgacga
       61 gacgcttgtt gcggggatcg tagccttcgg ccaggaggcc gacgtcgttg cgcaacgaga
      121 ggaggcgttc gaacaagcgc atggcgtcat cacgccggcc caggaggaca tagttgtccg
      181 cgagccaaaa actgcaggcg agaaacgcgc cttcgccggg tggcagaccg tcatccgttg
      241 cctcgctgtc gtagcggagc acgaagccgt cgaccagcag atgcttctcc acgcattcga
      301 cggtgccgcg gatgcgcgga tcgctcgcgg gcaggaagcc aacgagtggc atgagcagca
      361 cactcgcgtc cgcgagctcc gatccgtagg cctgcacgaa cgcgttgacg cgcgggttga
      421 acgcattgcg gcagacatcg gcgtggatct catcgcgcac cgcgcgccag cgatcgagtg
      481 gtccgtcgag attgcacagt tccgcgctct ttacggcgcg gtccatcgcg acccacgcca
      541 tcagcttcga gtgcgtgaag tgctgtggcg ctccgcgcgt ctcccaaatg ccttgatcgg
      601 gattgcgcca gatcttttcc agatgtgcag ccagcgactt ctgcaactgc caggcgtcgg
      661 cgctttcgtg gatgttgccg aggcgcgcct gatgcagcgc gtccatgact tcgccgtaga
      721 cgtcgatctg gagctggccg tgcgcggcat tgccgacgcg tacaggttta gagttttggt
      781 atccgggaag ccagggaata tcccactcac ggagcagacg ttcgccggcg aggccgtaca
      841 tgatctggac ctgatcggcg cttccggcgg cggcacgaag cagccaatcg cgccactgtt
      901 ccgcctcgct gtagtagccg gcgtccatca gcgagagcag cgtgagcgtc gcgtcgcgaa
      961 gccagcagta tcggtaatcc cagtttcgga cgccgccgat ttcttcggga agcgaagtcg
     1021 taggcgccgc gacgatgccg cccgtcggac ggtacgtgag cgatttgagc gtgaggagcg
     1081 atcgcatgac tggctcgcgc cattcgccgc gatagctgca gacgcttgcc cattcctccc
     1141 agaactcttg cgtcgtcgtg agggcgcgtc gcggatccac ggtgtcgggg gccggaaggt
     1201 gcgacggtcc ccacgtcatc acaaaagaga cttcgtcgcc ctcggctacg gtgaacgcgc
     1261 cgaccgtcgt cagatgctcg ccgtgcagct cgacgttggt gcgtatgacg atcatatccg
     1321 gacccgcgat ggcccgcagg gatccgtcgt ccaaccgact gacccatgga acgatcgagc
     1381 cgtagtcgaa gcggaaaacg atctccgtct tcatcggcac gcggccacgc ttgccaatga
     1441 ccgtgcgaac gatgttcgag cgctcgtcgc gcagcggcat gaagtcgacc aggacgacgc
     1501 agccttcgct ggtctcgaac tctgtttcga gaatcatcgt gtcgccgcga tagcgacgac
     1561 gcacgcgaac atcgtcagcg acaggtgcga cgagccagcg accgttgtcc ggtccgccca
     1621 gtatggcgga aaagcatgcg cccgagtcga agcgcggcca gcatagccag tcgatggaac
     1681 cgaaccgtga gacgagtgcc gcggtctcgc agtctccgat cagggcgtag tcttcgatgc
     1741 gtgccggcat gggagggctc gtacgcagaa atcgcaccct ggctgtggtg ggtgcgtgga
     1801 cgtcacgccg ctcacgacgc taacgtagag gcatgacagt ggagaatccg ggcgaatcgg
     1861 cgaccgcgat acgcctcatc gtcgtgatgg gcgtcgcggg cgcgggaaag acaacggtgg
     1921 gccgcgagct cgcgcaagcg atcggctggg agttccggga tgcggatgaa tttcactcgg
     1981 ccgcgaacat cgc
//
LOCUS       DATIMD010000315         4389 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2141566, whole genome shotgun sequence.
ACCESSION   DATIMD010000315 DATIMD010000000
VERSION     DATIMD010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4389
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2141566"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..628)
                     /locus_tag="VLI40_07055"
     CDS             complement(<1..628)
                     /locus_tag="VLI40_07055"
                     /inference="COORDINATES: protein motif:HMM:TIGR00654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HSU96971.1"
                     /translation="MSNSYAFHTLDVFTDTIFGGNPLAVLTDARGLSTEQMQQICREF
                     NLSETVFILPPEDASHTRRVRIFTPGRELPFAGHPTVGTAFLLAATGMIPLTEGETRI
                     VLGEGVGPVPVTIRVENGKPISAQLTTAQAPEFRNDTPTAPEIASLLSLSVPDVSTTS
                     LKTESVSCGVPFLIAPLTNRDAVSRAKLDRATWEKVLANGWTKEVYLFD"
     gene            complement(625..1281)
                     /locus_tag="VLI40_07060"
     CDS             complement(625..1281)
                     /locus_tag="VLI40_07060"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HSU96972.1"
                     /translation="MTDATRYVEQVPMHVGPVTLTGQRARLIPMTRDHVDALFRAADF
                     PAIWEHTGTRPIKTVDDMRRYVDVALAEQATGTAVPFVTTDPVTGEIIGSTRFANMSL
                     ADHRVEIGWTWMRPERQRTGVNGEAKAMMMRQAFDVWGALRVEIKTDVRNTRSRAAIE
                     RIGGLYEGTFRQHMVVREGRVRDTVYYSIMDYDWRDPNHRAYRNAISYGITPNPEPLV
                     "
     gene            complement(1336..2808)
                     /locus_tag="VLI40_07065"
     CDS             complement(1336..2808)
                     /locus_tag="VLI40_07065"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HSU96973.1"
                     /translation="MTQPAAVEAQHTPPFYDVEQRRTLVISGLAIIVGVGAVGIARLL
                     IAAIALVTNISFFGRFTARTVSPADNHLGIWVMVIPVIGGIIVGLMARYGSGAIRGHG
                     IPEAMEQILTNESKISPKITVLKPLSAAVAIGTGGPFGAEGPIIATGGALGSLVGQVL
                     HTTPDERKTLLAAGAAAGMAAIFGTPVAAVLLAIELLLFEYRPRSLVPVALASATATG
                     IRMVFEGSAGVFAMPQLTQPSGEALTAYMVLGAIVGIAAVGVTKSLYYIEEGFEKLPI
                     HWMWFPALGAVVVGIIGYFEPRTLGVGYDNISNILAGNFTNAVLIALVVLKFVSWSIA
                     LGSGTSGGTLAPLFTIGGGLGALLGILCVHWFPGLGVDPRIAALVGMAAIFAGASRAL
                     LTSVVFAFETTRQPIGLLPLLGGCSAAFIISSLMMRYTIMTEKLARRGTHVPTEYIAA
                     DPTEIARRDAAAVRHRHYDLPAELGVSRRESKESRKTEIL"
     gene            complement(2786..3280)
                     /locus_tag="VLI40_07070"
     CDS             complement(2786..3280)
                     /locus_tag="VLI40_07070"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HSU96974.1"
                     /translation="MGSNTNPPESVGSALVAIRRLVRTLRTTAVSVERETGLSTAQTF
                     VLQLLLEAPAESMNELAARTSTDQSSVSVVVSRLEAKGLVARLNSAADARRTQVVITA
                     EGIALMHRKPPTVQERLTRALTAMPSGSLGSLASELNSLVALMGAGEEPATLIFEDDA
                     AGSS"
     gene            3355..>4389
                     /locus_tag="VLI40_07075"
     CDS             3355..>4389
                     /locus_tag="VLI40_07075"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HSU96975.1"
                     /translation="MTLAARRIALSGALLLLATPVLRAGAQRSSGEPWRIDPLPQASL
                     VFANDGTLVGEIGTELRTSISIRTLPKYVGQAFVAVEDQRFYQHNGVDLIGIAGAIKD
                     DIMGDRRGASTITQQLVGNMHPDIINRNDRSLERKLREQQAAREMEKHYSKEQILEGY
                     LNVISFGHGYYGIESAAQHYFGKSASRLTLPEAATLAAMPKAPAIYDPVLHAARTVER
                     RNTVLALMLQQHYITQSEFNSARSAPLVTAPDWGMPAPAQYFVDVVRIQATRAGIPVM
                     SGGYRIYTSIDPLLQTAATDALRDEANAIEARPGYAHPTIASGKDYLQGAVVALDPNT
                     GDVRALVGGRD"
BASE COUNT          841 a         1369 c         1374 g          805 t
ORIGIN      
        1 cgtcgaacag gtacacttcc ttcgtccatc cgttcgcgag cactttctcc cacgtcgcgc
       61 gatcgagctt cgcgcgactc actgcatcgc gattcgtgag aggtgcaatc agaaacggaa
      121 cgccgcacga aacggactcc gttttcagcg atgttgtcga cacgtcgggc acgctcagcg
      181 acagcagtga cgctatctcc ggtgctgttg gcgtgtcgtt tctgaactcc ggcgcctgcg
      241 ccgtcgtgag ctgggcggaa atcggtttcc cattctcgac gcgtatcgtc accggaaccg
      301 gccccacgcc ctcgccgagc acgatgcgcg tctcgccttc ggtcaacgga atcattcctg
      361 tcgcagcgag caggaacgct gtgccgactg tcggatggcc ggcgaacggc aactctcggc
      421 ccggcgtgaa gatgcgaacg cgacgagtgt gcgatgcgtc ttcaggtggc agtatgaata
      481 cggtttcgga gagattgaac tctctgcaga tctgttgcat ctgctccgtg ctcaggccgc
      541 gcgcgtcggt gagtaccgcg agcgggttgc caccgaagat cgtatctgtg aagacgtcga
      601 gtgtatgaaa cgcgtatgag ttgctcaaac cagtggctcc ggattcggcg tgatcccgta
      661 cgagattgca ttcctgtatg cgcggtgatt cggatcgcgc caatcgtaat ccatgatgct
      721 gtagtacacg gtatcgcgca cgcgcccctc gcgcaccacc atgtgctggc ggaaagttcc
      781 ttcgtacaat ccgccgatgc gctcgattgc cgcgcgtgac ctcgtgttgc gcacatcggt
      841 cttgatctcc acacgcagcg cgccccagac gtcgaacgcc tgacgcatca tcatcgcctt
      901 cgcctcgccg ttcacgcccg tgcgctggcg ctcgggacgc atccatgtcc atccaatctc
      961 gacacggtgg tcggcgagac tcatgttcgc gaatcgcgtc gagccgatga tctcgcccgt
     1021 tactggatct gtcgttacga acggcactgc ggtccccgtt gcctgttcag cgagtgcgac
     1081 atcgacgtag cgtcgcatgt cgtcgacggt ttttatcgga cgcgtccccg tatgttccca
     1141 gatcgcgggg aaatccgcag ctctgaacaa cgcgtccacg tgatcgcgtg tcattggaat
     1201 gagacgggcc cgttgccctg tgagggttac gggcccgaca tgcatgggaa cctgctcgac
     1261 gtaccgcgtc gcgtctgtca tctctgcctg aatctccgat cgaaggtatc aggcgagaaa
     1321 gataaaacat cagcgctaga gaatctccgt cttgcgcgac tccttggatt ctcgccgtga
     1381 cacgccaagc tctgcgggca gatcgtagtg ccggtggcgc accgccgccg cgtcgcgccg
     1441 tgcgatctcg gtaggatccg cggcgatgta ttccgtggga acgtgcgtac cgcgccgcgc
     1501 cagcttctcc gtcatgatgg tgtagcgcat catgagcgac gagatgatga atgccgcgct
     1561 gcaaccgccg agcaagggaa ggaggccgat cggctgtcgc gtcgtctcga atgcaaacac
     1621 gacggaagtg agcagcgcgc gtgacgcgcc tgcgaagatg gccgccattc caaccagcgc
     1681 cgcgatgcgc gggtccacac caaggcccgg gaaccagtgc acgcacagta ttccgagcag
     1741 cgcgccgagt ccgccaccga tggtgaacaa cggcgcgagc gttccgcccg aggtgccgct
     1801 gccgagcgcg atggaccagg agacgaactt gagtacgacg agcgcaatca gcacggcgtt
     1861 ggtgaagttg ccggccagga tgttcgagat gttatcgtag ccgacgccca gggtgcgcgg
     1921 ctcgaagtag ccgatgatgc caaccaccac agcgccaagt gcagggaacc acatccagtg
     1981 aatcggcagc ttctcgaagc cttcttcgat atagtacaga gatttggtga cgccaaccgc
     2041 cgcgattccg actatcgcgc cgagcaccat gtacgccgtc agcgcctcgc cactcggctg
     2101 cgtcagctgc ggcatggcga atacaccagc agagccttcg aagaccatgc ggatgcctgt
     2161 tgccgtagca gatgcgagcg caacaggtac gagcgagcgc gggcggtatt cgaacaacag
     2221 cagctcgatc gcaagcagaa cggcagcgac cggagttccg aagatcgccg ccattccggc
     2281 ggcagcaccg gcagcgagga gagtcttgcg ctcgtcggga gtggtgtgaa gcacctggcc
     2341 gacgagtgat cccagcgcgc cgccggtcgc gatgatcggg ccttccgcgc cgaacggtcc
     2401 gccggtgccg atcgcgacag ctgcggacag cggcttcagc accgtgatct tcggcgagat
     2461 cttgctttcg ttggtgagaa tctgctccat cgcctccgga attccgtggc cgcgtatcgc
     2521 ccccgaccca tatcgcgcca tcagaccgac gatgattccg ccgatcactg gaatgaccat
     2581 cacccagatg ccgaggtgat tgtcagcagg tgaaacggtg cgggctgtga accttccgaa
     2641 gaacgagatg ttggtgacca gcgcgatcgc cgcgatgagc agcctcgcga tcccgaccgc
     2701 gcccacgcca acgattatcg caagaccgga tatgaccagc gttcggcgtt gctcgacgtc
     2761 gtaaaaaggt ggggtgtgtt gtgcttcaac tgctgccggc tgcgtcatct tcaaagatca
     2821 gggtggcggg ttcttcaccg gcgcccatca gggcgacgag gctgttcaat tcactggcga
     2881 gcgatccgag cgatccgctg ggcattgcgg tgagcgctcg cgtgagacgc tcctgcaccg
     2941 tcggcggctt gcggtgcatg agcgcgatgc cctcggccgt tatgacgacc tgagtgcggc
     3001 gggcgtcagc agccgagttg aggcgggcaa ccagtccctt ggcctcgagt cggctcacga
     3061 ccaccgatac cgaactctga tcggtcgacg tgcgtgccgc caattcattc atggattctg
     3121 ctggcgcttc gagcagaagc tgcagaacga acgtttgagc ggtactcagt ccggtctcgc
     3181 gctcgaccga tacagcggtc gtgcggaggg tccggacgag ccggcggatg gcgacgaggg
     3241 cgcttccgac cgactccggt ggatttgtat tggaacccat gcgtgtgaag ctaacacacc
     3301 acgccgcaag gacatagaag caaagtgccc tcgcggaagg ttatcttcga aagtatgacc
     3361 cttgccgcac ggcggatcgc cctctcgggt gcgctcctgc tccttgcgac gcctgtgctg
     3421 cgcgcgggcg cccagcgcag ttcgggcgag ccgtggcgga tcgaccctct gccgcaggca
     3481 tcgctcgtct tcgcgaacga tggaacgctg gtcggtgaga tcggcaccga gctgcgtacc
     3541 agtatctcga ttcgcactct tccaaagtat gtagggcagg cgttcgtcgc ggtcgaggac
     3601 cagcgcttct accagcacaa tggcgtcgat ctcatcggaa tcgccggcgc gataaaggac
     3661 gacatcatgg gcgaccggcg cggcgcgagc accatcacgc agcagcttgt cggcaacatg
     3721 catccggaca tcatcaaccg gaacgacagg agtctcgagc gcaagcttcg cgagcagcag
     3781 gcggcgcgcg agatggagaa gcactacagc aaggagcaga tcctcgaagg ctatctcaac
     3841 gtcatttcgt tcgggcatgg ctactacgga atcgagagtg cggcacaaca ctacttcggc
     3901 aaatcagcga gcaggctgac gcttcccgaa gcggcgacgc tcgccgcgat gcccaaggcg
     3961 cccgcgattt atgatccggt cctgcacgca gcgcggacgg tcgagcgacg caacaccgtg
     4021 ctcgcgctca tgctgcagca gcactacatc acgcaatcgg agttcaacag tgcccgctcg
     4081 gcgccgctcg tcacggctcc cgactggggg atgccggcgc cggcgcaata cttcgtcgat
     4141 gtcgtgcgca tccaggcaac gcgcgccgga attccggtta tgtccggcgg atatcgcatc
     4201 tatacgagta tcgatccgct gctgcagacc gcggcaaccg atgcgttgcg cgacgaggcg
     4261 aatgcgatcg aggcgcggcc cggatacgcg catccgacaa tcgcgtcggg caaggattat
     4321 ctgcagggtg cagtggtcgc gctcgacccg aacaccgggg atgtgcgcgc actcgtcggc
     4381 ggacgggat
//
LOCUS       DATIMD010000316         1601 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_411784, whole genome shotgun sequence.
ACCESSION   DATIMD010000316 DATIMD010000000
VERSION     DATIMD010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411784"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1468
                     /locus_tag="VLI40_07080"
     CDS             <1..1468
                     /locus_tag="VLI40_07080"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSU96976.1"
                     /translation="TLSGGEAQRIGLANSLGSRLVDTLYVLDEPSVGLHPRDMSRLLS
                     LLRRLRDAGNTVIVVEHDPAAMEVADYMVELGPGSGAHGGSVMFAGPMSRIAESPLTG
                     KYLSGELSVPLPEERRRVGPRWIALNGAREHNLHGVDVKIPVGAMTVVTGVSGSGKST
                     LVHDVLYHALETHTQGEHSAKRHLGEAVGAYESISGVEAIDDVVMIDQSPIGRSPRSN
                     PVTYIKAMDEIRAIFADAPLSRQRKYTPGTFSFNVEGGRCSKCEGAGYTEVEMVFMAD
                     VFVPCDECGGRRFKAPVLEVRVNGKNIDDVLQLTVDQAIRFFAREEKLGQALWHLQQV
                     GLGYLRLGQPATTLSGGEAQRIKIARELALASKKGGRKLYIMDEPTTGLHLDDIRKLV
                     LVLDRLVSAGHTMVLIEHNLDVIKLADWVIDMGPEGGDGGGQLVAMGRPEDIVKVRGS
                     HTGRWLAPLLAAGEPVREAPAASQRATTRSGSKTLRAG"
     gene            1529..1601
                     /locus_tag="VLI40_07085"
     tRNA            1529..1601
                     /locus_tag="VLI40_07085"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1563..1565,aa:Asn,seq:gtt)
BASE COUNT          313 a          454 c          550 g          284 t
ORIGIN      
        1 cacgctatcg ggcggcgaag cgcagcgcat cggacttgcc aattcactcg gctcgcgact
       61 ggtcgacaca ctctatgtgc tggacgagcc gtcggtcgga ttgcatccgc gcgacatgag
      121 caggctgctg tcgttgctcc ggagactgcg cgacgcgggc aacaccgtga tcgtcgtcga
      181 gcacgaccct gcggcgatgg aggttgcgga ttacatggtg gagctcggac cgggcagcgg
      241 tgcgcacggt ggctccgtga tgttcgcagg accgatgtcg cgcatcgccg agagcccgct
      301 caccggaaag tatctgagtg gtgagttgtc ggttccattg ccggaagaac gccgtcgcgt
      361 ggggccgcgc tggatcgcgc tcaacggcgc gcgcgagcac aatcttcacg gtgtcgacgt
      421 gaagattcct gttggcgcga tgacagtggt cacgggtgta tcgggatccg gaaagagcac
      481 cctcgtgcac gacgttctgt atcatgcgct cgaaacacac acgcagggcg agcactccgc
      541 gaagcgacac ctcggcgagg cggtcggcgc gtacgaaagc atcagtggcg tggaggcaat
      601 cgacgacgtc gtgatgatcg atcagagccc catcgggcgc tcaccgagat ccaatccggt
      661 gacgtacatc aaggcgatgg atgagattcg cgcgatcttc gccgatgcac ctctgtcgcg
      721 ccagcgtaag tacactcccg gcacattcag cttcaacgtt gaaggtggac gctgcagcaa
      781 gtgcgagggc gctggctaca ccgaagtcga gatggtattc atggcggatg tattcgttcc
      841 gtgcgatgaa tgcggtgggc ggcgcttcaa ggcgcctgtg ctcgaagtgc gcgtcaacgg
      901 caagaacatc gacgatgtat tgcagctgac cgtcgatcag gcgatacggt tctttgcacg
      961 tgaagagaag ctcggccagg cgctctggca cctgcagcag gtcggattgg gatatctgcg
     1021 attgggccaa ccggcaacga cgctctctgg cggcgaggca cagcgcatca agatcgcgcg
     1081 cgagctggcg ctggcgagca agaagggcgg acgcaagctg tacatcatgg acgagccgac
     1141 gaccggcctg cacctggacg acatccgcaa gctggtgctg gttctcgacc ggctggtctc
     1201 cgcgggtcac acgatggtgc tcatcgagca caacctcgat gtgatcaagc ttgcggactg
     1261 ggtgatagat atgggcccgg aaggcggcga cggaggcggg cagctggtag cgatgggccg
     1321 gcccgaggat atcgtgaagg tgcgaggctc gcacacgggg cgatggctgg caccgctgct
     1381 cgcagccggg gagcctgtgc gcgaagcgcc ggccgcgtcg caacgggcta caacgcgtag
     1441 cggatcgaag acactgcggg caggttgagc ttgacgccgc cctacgctaa attggtaggt
     1501 ctcccccgga acaggtcccg tgggacattc cccagtagct cagttggtta gagcattcga
     1561 ctgttaatcg aagggtcgta ggttcaagtc ctacctgggg a
//
LOCUS       DATIMD010000317         7812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_703021, whole genome shotgun sequence.
ACCESSION   DATIMD010000317 DATIMD010000000
VERSION     DATIMD010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7812
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_703021"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /locus_tag="VLI40_07090"
     CDS             <1..402
                     /locus_tag="VLI40_07090"
                     /inference="COORDINATES: protein motif:HMM:NF024639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HSU96977.1"
                     /translation="NQSGIARGRFTVADYLLTQMRLDQLLNESGATIDATYYCPDHPD
                     FTGPCSCRKPGIALFERAVAEHTLNMSAPGYIGDRWRDVEPFRRLGGTPVLISGPNTP
                     PEDVVRAKDENVAIVASLGDAVDILLGAAQS"
     gene            399..992
                     /locus_tag="VLI40_07095"
     CDS             399..992
                     /locus_tag="VLI40_07095"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HSU96978.1"
                     /translation="MKTRIAVLASGGGTNLQAILDHFTALGDAACGEVVIVGSNRSSA
                     GALDRARVAGIEALVFDPRSEDDLMRILTGHDVQLIALAGYLRLVPPGVIAHYAGRIV
                     NVHPGPLPAFGGAGMYGARVHEAVLAAGLSESAVTVHLVTERYDDGPPLATWPVPVLE
                     NDTPDALAARVLRVEHIIFPRIIDALAATVAADSSTR"
     gene            1008..2540
                     /gene="purH"
                     /locus_tag="VLI40_07100"
     CDS             1008..2540
                     /gene="purH"
                     /locus_tag="VLI40_07100"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HSU96979.1"
                     /translation="MPLALLSVSDKTGLVEFARGLVDLGWDLVSTGGTSRALRGAGLT
                     VRDVSDLTQFPEMLDGRVKTLHPLIHGGLLARRDSDEHAETVRVHAIPWIDLVAVNLY
                     PFRETAARAGVSADDVVEQIDIGGPAMLRSAAKNFDAVTVICDPVDYSRVLASLQAKD
                     DDHDLRKRLAAKVFEHTAAYDGAIAAWFATERGDRFADSLVIALERSQTLRYGENPGQ
                     HAAFYVESKGRGLDALVQHGGKELSFNNLLDLEGALLAADAFSGQTCCAIIKHTTPCG
                     LAIGSSPLEAYQKALACDPQSAFGSVIAFTTAVDTEAAEALSSLFVECIVAPSFSPDA
                     LAILGKKKNLRVLEGIAAWPRGSFDFKRVRGGLLVQDRAPEPIPYAHWRVVTDRTPTD
                     RERDDLAFAWQAVASVKSNAIVLVRDGATIGIGAGQMSRVDASFLSVHKAHNAGHETA
                     GAALGSDAYFPFRDGVDHAADAGVTAIVQPGGSIRDAEVIAAANEHGIAMVFTGQRQF
                     RH"
     gene            2556..4805
                     /locus_tag="VLI40_07105"
     CDS             2556..4805
                     /locus_tag="VLI40_07105"
                     /inference="COORDINATES: protein motif:HMM:NF022481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2723 domain-containing protein"
                     /protein_id="HSU96980.1"
                     /translation="MTATTATTTAEVDYRPSYGAAAIAATLVFVLYLVTLAPSTAMWD
                     TSEYIAAAFTFGLPHPPGNPFFVILGRFFSILPIAPNVAMRINILAALCSAVSAGMWF
                     LIAERVVAGWLPRKWQRIAAGALAALIGSTAFTVWAQSVVNEKVYTVSLVGMAIVSWL
                     TVRWCDDPDGPKADRFLVLIAYLSGLGYANHMAGFLALPAVFVAVLVIRPRTFLRWKL
                     VLAALLAIVLGMTPFLTQPIRSAYFPRINEGETTGCVTKIAADCTFSKLTYDRFMYNF
                     NRTQYGKPALTDRQIPFTAQVGMWWTYFRWQWLRDANGTHAAAQEALAWVFLLLGLLG
                     GWVHWQRDRRSFWFFGPLIFTVTLVLIYYMNFKYGYSQSPELGDAVPREVRDRDYFYL
                     WSFSAWSVWVALGLFNVWERLAQMFGSDPVRVGTETVEVPRKSSWTAASPLLLLAVIP
                     LFGNWSAASRHGQTDTRDFAHDLLESVEPYGVLITVGDNDTFPLWYAQEVEHIRPDVT
                     VLCTSLLNTDWYTRQLIRNPIRPYDVAKGPPAYADRTWTRPTHPLVDLTYMQSDSVPP
                     VVALDAPQDLNTKSGLHFSVHPRDLGGGFHGLERADLFVLYIIRDAFPSTPVYFSRTD
                     GSYPDEMGFGNNLLTTGLARKLVATPPTASSTIVHLPTDGWFDIATTYSLWTRSFDAP
                     KSLAARHGWVDRPSVGIPYVYVRTGAVLSEALLQVGRQADAQKVMATTQRVANGTGLA
                     DLLTAQQQQ"
     gene            4847..4931
                     /locus_tag="VLI40_07110"
     tRNA            4847..4931
                     /locus_tag="VLI40_07110"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4881..4883,aa:Ser,seq:tga)
     gene            complement(4956..5729)
                     /locus_tag="VLI40_07115"
     CDS             complement(4956..5729)
                     /locus_tag="VLI40_07115"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSU96981.1"
                     /translation="MGPCVFALVSVVISAGTDSIPARVAGLVTDTAGRPVGSAEVRLD
                     SAQWRHVSDDGRFTILQVVPGRHLLVVRSPGFAVDSLRFRADPGESIGLTAVVHRFTA
                     LAGVTVVGRPDTTRPSVGITHDWTEGFADRKSHNIGGTFLDQTAIDRKGATRMTELLR
                     TVPGVRLFPMLNEYGGNDYKIVMRGASTLGEDVCPIQYYLDGHPFDVSDDLDHAISPN
                     NVAAMEIYSGASQVPERFKGPNSRCGVIVIWTTSAGAHD"
     gene            complement(6153..7154)
                     /gene="rfaD"
                     /locus_tag="VLI40_07120"
     CDS             complement(6153..7154)
                     /gene="rfaD"
                     /locus_tag="VLI40_07120"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008712 - ADP-glyceromanno-heptose
                     6-epimerase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HSU96982.1"
                     /translation="MIDFARARVLVTGGAGFIGSALVWELNRRGCERIVIADFLETSE
                     KWRNLAPLAFEDYLEADDLLPRLGAGALGRFDVVLHMGACSSTTELDATYLVRNNYQF
                     TRDLAAWTLSSNGRFVYASSAATYGDGGAGMRDDASLPYLHTLRPLNMYGYSKQMFDL
                     YAAQRGILGKIAGVKFFNIFGPNEDHKGDMRSLVNKAYGQIAETGEIRLFKSYRPEYA
                     DGEQKRDFLYVKDAVAMTLHLAATDGANGLFNVGSGDANTWIDLANAVFAALGKPANI
                     RFIDMPEDLRARYQYFTQADIGRVRESGYAAPITPLADAVGDYVKNYLVPRVHLGDV"
     gene            complement(7164..>7812)
                     /locus_tag="VLI40_07125"
     CDS             complement(7164..>7812)
                     /locus_tag="VLI40_07125"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HSU96983.1"
                     /translation="LAPGAAAGEFGAGFFFGAVLFTTTIGIIWALGDYAVIGVNHWTV
                     MLSPLAIALGAGVLEEILFRGVIFRITEDWIGSWGALAFSSLLFGAGHLANPHATLTS
                     ALAIALEAGVLLGAVFMITRRLWLPIGLHAAWNFTQAGIFGAPVSGTVPHGLFVSTLS
                     GPTWATGGGFGPEASLPAVLVALSAVWLLVYAVRTGRVVQPIWRRVAGHASVAAL"
BASE COUNT         1523 a         2492 c         2310 g         1487 t
ORIGIN      
        1 aatcagtccg gaatcgcgcg cggccgtttc actgtggccg actatctgct tacgcagatg
       61 cggctggatc agcttctgaa tgaaagcgga gccacgatcg atgcgactta ctactgtccc
      121 gaccatccgg atttcacggg accgtgcagt tgccgcaagc caggaatagc gctgttcgag
      181 cgcgccgtcg cggaacacac tctgaacatg agcgcgccag gctacatcgg cgacagatgg
      241 cgggacgtgg aaccgtttcg tcggctgggc ggcacgccgg tgctgatcag tgggcccaac
      301 acgccgcccg aagacgtcgt gcgtgcgaag gacgagaatg tcgccatcgt tgcatcgctt
      361 ggcgacgctg tcgacatcct gcttggtgcg gcgcaatcgt gaaaacgcgc attgcagtgc
      421 ttgcatccgg cggcggtacg aacctgcagg cgatactgga tcacttcacc gcgctgggtg
      481 atgcagcatg cggcgaagtc gttatcgtag gctccaaccg ctccagcgcc ggcgcacttg
      541 accgagcgcg cgttgccgga atcgaggcgc tggtattcga tccccgttcc gaagatgatc
      601 tcatgcgcat tctcaccgga cacgacgtcc agctgatcgc gctcgcagga tatctgaggc
      661 tcgtcccgcc gggcgtgatc gcacactacg ccggccggat agtgaacgta cacccgggtc
      721 cgctaccggc gttcggtggc gcgggcatgt acggcgcgcg cgtacacgaa gcggtgcttg
      781 ctgcgggatt gtcggaatcc gccgtgacag tgcacctcgt caccgaacgc tacgatgacg
      841 gccccccgct cgcgacgtgg cctgtccccg tgctcgaaaa cgacacaccc gatgcccttg
      901 cggcacgggt actgcgcgtc gagcacatca tattccccag aatcatcgac gcgctagctg
      961 ctaccgtcgc cgccgacagc agcacgcgct gaatacggac atacatcatg cctctcgcct
     1021 tactatctgt ttccgacaag acaggactcg tggaatttgc tcgcgggctc gtggacctcg
     1081 gatgggatct cgtttcgacc ggcggaacat cgcgcgcgct gcgcggtgcc ggcctcacag
     1141 ttcgcgacgt cagcgatctc acgcagtttc cagagatgct ggatgggcgc gtcaagacgc
     1201 tgcatccact catccacggc ggactgctgg cccgacgcga ttcggacgag cacgcggaga
     1261 cggtccgcgt tcatgcgata ccgtggatcg atctcgtggc cgtcaatctc tatccattca
     1321 gggagaccgc ggcgcgcgca ggagtcagcg ctgacgacgt cgtcgagcag atcgacatcg
     1381 gcggtcccgc gatgctccgc tccgcggcga agaacttcga cgcggtaacc gtgatctgcg
     1441 atcccgttga ttactcgcgc gtgctcgcat cgcttcaggc gaaggacgac gaccacgacc
     1501 tgcgcaagcg gctcgcggcc aaggtattcg agcacactgc ggcttacgac ggagctatag
     1561 cagcatggtt cgcgacggag cgcggcgaca ggtttgccga ctcgcttgtg attgcgctcg
     1621 agcgatccca gacgctgaga tatggggaga atcccggtca gcacgcagcc ttctacgtcg
     1681 aatcgaaagg acgcggactc gatgcgctcg ttcagcatgg cggcaaggag ctgagcttca
     1741 acaacctgct cgatctcgaa ggcgccctgc tcgcagccga cgcattctcc gggcagacgt
     1801 gttgcgcgat cataaagcac accacgccat gcggcctcgc aatcggatcg tcgcctctcg
     1861 aagcctatca gaaggcgctc gcgtgcgatc cgcaatctgc gttcggttca gtgatcgcct
     1921 tcacgacagc ggtggatacg gaagcggcag aagcactgtc cagtctgttc gtcgagtgca
     1981 tagtagcgcc gtcgttctcc cccgacgccc tcgccatact cggcaagaag aaaaacttgc
     2041 gcgtgctcga aggaatcgcg gcatggccgc gcggctcgtt cgatttcaag cgcgtgcgcg
     2101 gagggttgct ggtgcaggac cgcgcgccgg agccgattcc ctatgctcac tggcgagtcg
     2161 tcaccgatcg gacaccgacc gaccgcgagc gcgatgatct cgccttcgcg tggcaggctg
     2221 tcgcgagcgt caagtcgaac gcgatagtac tcgtacgcga cggcgccacc atcgggattg
     2281 gggccggcca gatgtcccgg gtcgacgcct cgttcctctc cgtgcacaag gctcacaacg
     2341 ccggccacga aaccgccggc gcggcgcttg gctccgacgc ctattttccc ttccgcgacg
     2401 gtgtcgatca tgccgccgac gccggcgtta cggcgatcgt ccagcccggc ggttcgatca
     2461 gggacgccga ggtgattgcc gcggcgaacg agcacgggat agcgatggtg tttaccggtc
     2521 aacgccagtt ccgtcattag cctatctttc tgcccatgac tgcaaccaca gccaccacga
     2581 ccgcggaagt cgattaccgc ccgtcctatg gagcggccgc gatcgcggca acgctagtct
     2641 ttgtgctcta cctcgtcacc ctggcgccat ccacggcgat gtgggacacc agcgagtaca
     2701 tcgccgccgc gttcacgttc ggactaccgc atccgcccgg caatccgttc ttcgtcattc
     2761 ttggccggtt cttctcgatc ctgcccatcg cgcccaacgt ggcgatgcga atcaacatcc
     2821 tggcggcgct gtgcagcgca gtgtcggcgg gaatgtggtt cctgattgcg gagcgcgtcg
     2881 tcgccggctg gctgccgcgt aaatggcagc ggatcgctgc cggtgcgctc gccgcgctca
     2941 tcggatcgac agcgttcacc gtatgggcgc agtcggtcgt caacgaaaaa gtgtacaccg
     3001 tgtcgctcgt cggcatggcg atagtttcgt ggctcacggt tcgctggtgc gatgatcccg
     3061 acggtccaaa ggccgatcga tttcttgttc tcatcgccta tctgagcggg ctgggctacg
     3121 ccaaccacat ggccggcttt ctggcgttgc ccgcggtgtt cgtcgcggtc ctggtgattc
     3181 gcccgcgcac cttcctccgc tggaagctcg tgcttgctgc actgctcgcg atcgtgctgg
     3241 gaatgacacc gttcctcacg cagccgattc gatccgcgta cttcccgcga atcaatgaag
     3301 gcgagaccac gggctgcgtc acgaaaattg ccgccgattg cacgttcagc aagctgacgt
     3361 acgaccggtt catgtacaac ttcaaccgca cacagtacgg caagccggcg ttgacggaca
     3421 ggcagattcc gttcaccgcg caggttggta tgtggtggac atatttccgc tggcagtggc
     3481 tgcgcgacgc caatggcacg cacgcggcgg cccaggaagc gctcgcgtgg gtattcctgc
     3541 tgctgggatt gcttggcggc tgggtacact ggcaacgaga ccgacgaagt ttctggttct
     3601 tcgggccgct gatattcacg gtcacgctgg tgctgatcta ctacatgaac ttcaagtatg
     3661 gctattcgca gtcgccggag ctcggcgacg cggtgccgcg agaagttcgt gacagggatt
     3721 atttctacct gtggagcttc agcgcgtgga gcgtctgggt cgcgctcgga ttgttcaacg
     3781 tatgggagcg actcgcgcag atgttcggat cggatcccgt ccgtgtcgga accgagaccg
     3841 tcgaagttcc gcgcaagtcg agctggacag cggcatctcc actgcttctg cttgccgtga
     3901 ttccgttgtt cggcaactgg agcgccgcgt cgcgccatgg tcagaccgac acgcgcgact
     3961 tcgcgcacga tctgctcgaa tccgtggagc cttacggcgt gctcatcacc gtcggcgaca
     4021 acgacacgtt cccgctgtgg tacgcacagg aagtcgagca cataaggccg gacgtcacgg
     4081 tgctgtgcac atcgctgctc aacaccgact ggtacactcg ccagctgatt cgcaatccga
     4141 tccggccgta cgatgtcgcg aagggaccgc cggcgtatgc ggatcgtacg tggacacgtc
     4201 cgacccatcc gctggtcgat ctgacctaca tgcaatccga ttcggtgcca ccggtagttg
     4261 cactcgacgc gccgcaggat ctcaatacca agagcggcct gcacttctcc gtgcatcccc
     4321 gcgaccttgg cggcggcttc catggactgg agcgcgccga tctcttcgtg ctctacatca
     4381 ttcgcgacgc attcccatcg actccggtgt atttcagccg taccgacggc agctatcccg
     4441 atgagatggg cttcggcaac aatctcctca cgaccggtct tgcgcggaag ctcgtggcaa
     4501 cgccgccgac cgcatcctcg acgatcgtgc atctgcccac cgacgggtgg ttcgatatcg
     4561 cgaccaccta ctccctgtgg accaggagct tcgacgcgcc gaagtcactc gcggcccgcc
     4621 acggctgggt ggaccggccg tcggttggaa ttccgtatgt gtacgttcgt acgggagcgg
     4681 tgctttcaga agcactgctt caggtcggtc gtcaggccga cgcgcagaag gtcatggcga
     4741 cgacgcagcg agtcgccaac ggcacaggtt tggcggacct tttgacggcg cagcagcagc
     4801 aatagttttc gtggtacggc gcgggcacat ccgcgccggc tttagcggag gcgtgccaga
     4861 gcggtttaat gggtcagtct tgaaaactga agaaccgaaa ggttccgtgg gttcgaatcc
     4921 caccgcctcc tttagtcatc cagtcatcac gttgtctaat cgtgcgcacc tgcactggtc
     4981 gtccagatta cgatgacacc gcaacgcgaa ttcggcccct tgaaccgttc cggcacctgc
     5041 gacgcgccgg aatagatctc catcgccgcc acattattcg gtgagattgc atgatcaagg
     5101 tcgtccgata catcgaacgg gtggccatca agatagtatt ggatcgggca cacgtcttcg
     5161 ccgagcgtcg acgcgccgcg catgacgatc ttgtagtcgt ttcccccgta ttcgttgagc
     5221 atggggaata acctcactcc cggaacggta cggagcaatt ccgtcatccg cgtagctccc
     5281 tttcggtcta ttgcagtttg atcgaggaat gtgccgccaa tgttatgcga tttgcgatcc
     5341 gcgaaccctt ctgtccagtc gtgagtgatg ccaacgcttg gacgcgtcgt gtcgggacgc
     5401 ccgacaacag tgacaccggc aagcgcagta aatcgatgca caacagcggt cagaccgatc
     5461 gattcgccgg gatccgcgcg gaagcgaagc gaatcgacag caaagcccgg cgatcgaaca
     5521 acaagcaggt gtctccccgg aaccacctgc agtatcgtga atcggccatc gtcggatacg
     5581 tgacgccact gtgcggaatc gaggcgcact tcggccgatc caaccggacg cccggcggtg
     5641 tctgtaacca gcccggcgac tcgagcgggt atgctatcag tacctgcgct aatgaccacg
     5701 ctgacgagcg cgaagacaca aggccccata tgaggtacgc cgatgagttt ccggtgatcc
     5761 tagcgcgcga tcaacgatac tatccgcggc tgcacatcct gattcatcgc gatctccgtc
     5821 acaaagccac gagtccgacg aaaaagaccg cccacgacgc gagcagagcg accaaaagaa
     5881 ctcgcatccg gtcaacgagg tcatagccgg cgatctgata gcaaccgaag ttgagcaccc
     5941 acatcgcccc cgaccgatag ggtcgaagag agtcggccct ttccgctagc ggtttccgga
     6001 atggaatcga ctggctgtac gcatggcgca gcatcgccgc tacggtgaag aatgggacgc
     6061 cgcacaatag cttcagagca attcgcaagt cgccgccagt gttggatggt tgctcatacg
     6121 tccgctacac tttgcgcgac gcggaagatc gattacacgt cgcccagatg cacccgcggc
     6181 acgagatagt tcttcacgta atccccgacc gcatccgcaa gcggagttat cggcgcggca
     6241 taaccacttt cgcgcacgcg tcctatgtca gcctgcgtga agtactgata cctggctcgt
     6301 agatcttccg gcatgtcgat gaacctgata ttcgccggct tcccgagcgc cgcaaatacg
     6361 gcgttggcga gatcgatcca cgtattcgcg tccccgctgc cgacgttgaa caatccgtta
     6421 gcgccgtctg ttgccgcaag gtgcagtgtc atcgccacgg catccttcac gtacagaaaa
     6481 tcgcgcttct gctcaccatc cgcatactct ggacgatagc tcttgaacaa tcgtatctcg
     6541 cctgtctctg ctatctgtcc atacgccttg ttcacaaggc tgcgcatgtc gcccttgtgg
     6601 tcctcgttgg gcccgaagat gttgaagaac ttgactcccg cgatcttgcc gagtatcccg
     6661 cgttgcgctg catacagatc gaacatctgc ttggagtagc cgtacatgtt gagcggacgc
     6721 aacgtgtgca gatacggcag cgacgcgtcg tcgcgcatcc ccgctccacc gtcaccatag
     6781 gtcgccgcag acgacgcata cacgaaccgc ccgttcgacg acaacgtcca cgcggcgaga
     6841 tccctggtga actgatagtt gttgcgcacg agatacgttg catccagctc ggttgtggat
     6901 gagcacgcac ccatgtgcag cactacatcg aaacgtccga gagcgcccgc gccgagtctc
     6961 ggcagcagat cgtccgcttc cagataatcc tcgaatgcga gcggcgccag attgcgccac
     7021 ttttcgctcg tttcgaggaa gtcggcgatc acgatgcgct cacagccgcg cctgttgagc
     7081 tcccacacga gcgcgctccc aatgaagccg gcgccgcccg tgaccagcac tcgcgccctg
     7141 gcaaagtcga tcatgcgggg aatttacagc gctgcgacgc tggcatgacc agcgactcga
     7201 cgccatatgg gctgcacgac gcgcccggtt cggaccgcgt aaacgaggag ccacacagcc
     7261 gagagtgcaa ccagcaccgc tggcagcgac gcctccggcc cgaatccgcc gccggtggcc
     7321 cacgtgggac cggacagtgt ggacacgaac agtccatgcg gaacggtgcc ggacaccggt
     7381 gctccgaaaa tgccagcctg cgtaaaattc cacgcagcgt gaagcccgat aggcaaccac
     7441 agacgccgcg taatcatgaa cacagcgccg agtagaactc cagcttccaa tgcaatcgcc
     7501 agcgcggatg tcagcgtcgc atgaggattt gcgagatggc cagcgccgaa caacaatgac
     7561 gaaaatgcga gcgcacccca gctcccgatc caatcctctg tgatccggaa gatgacgccg
     7621 cgaaacagta tttcttccag cactcccgct ccgagcgcga tcgcgagcgg cgacaacatc
     7681 acggtccagt ggttgacgcc aatcacggcg taatcaccta gtgcccagat gatcccgatt
     7741 gtagtcgtga acaggacggc accgaaaaag aagccagccc cgaactctcc ggctgccgcg
     7801 ccgggcgcaa gc
//
LOCUS       DATIMD010000318         8313 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2431721, whole genome shotgun sequence.
ACCESSION   DATIMD010000318 DATIMD010000000
VERSION     DATIMD010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8313
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2431721"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1203)
                     /locus_tag="VLI40_07130"
     CDS             complement(<1..1203)
                     /locus_tag="VLI40_07130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96984.1"
                     /translation="MPRRWFQAAIFTLATSLYAGAAGAQAITGLGEDASITPAGSFRI
                     KIESDWSYWDQLFVSPKPGVAGILQPLGGRFSLDSVGAAQLSILKPVQDSLRAITGVS
                     GINVSVGKTVTQVTDRVANVPISLEAGISRWLSVTAMVPIVHTRTSVFFRANPGAKEA
                     NLGPNPATAGDAVARATDSIFTAQVITAATAVRAYCSGSGASDPQCAGSAALVTSATG
                     FGRSITSLYLNGPLVPMRGSTVQGAVDARVSTVRGALNAFAANPATGVPAVTATGVVG
                     APTPLATPGMQALLSDPSFGVALQLFQTIERTGIGDAELTAKLLLFDSFRFGNASRFT
                     PHGINARLAVAGGYRFPTGSLPESDALTDIGTGTHAAAVLARGYLDILLGGHFWVSGV
                     ARYAKATSD"
     gene            1357..3093
                     /locus_tag="VLI40_07135"
     CDS             1357..3093
                     /locus_tag="VLI40_07135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96985.1"
                     /translation="MHPADGSIHGVGVISLAHRGAIEFAGAPDFENGAGEPLLRLSFE
                     SNGAPIELAASRMAWQRVLEWLPTFNSTVGDLVIRGTIFAPCGRAADFPGFVYAISIE
                     NRGQSVAAVKFRAQGTLAVRQHRIRTARRFDDAHVASLADDIVTLRGTSRGSETALAL
                     TGDSMVGTIAESTDGTARFALAREASLQPGERVDLALYVAAGPEVDGAVAMVQRMRLR
                     GWRTLASQTRDAISALQQSTGVPAADRLINRHLMFAYFYAAGRAIDDARWYVFRSRIP
                     WCEQALTVRDYEALMWLVPAFQLADTALARELLLRTCELHGYAPGRGINYMDGTPFDV
                     AFCLDAAAAYPVSVDRYVAQTGDDRIVEDAPIAEALYAANDDIAASRHGSLPLYRTDA
                     TPSGADAKLPYTLHGNALVADALEVLKQTLDEKTAENVQNADAVRAAITRQFATDKDS
                     SRTLLSTATDLAGETSMHDDPVGSVFWLPLYHMLSRDDSIYRRTVRRLEQSDADQTRI
                     NVAERCATLMGPDAAKTLEWLRRADLDGGLAAEIVDSDGRAIANGGDASLSALIAYSV
                     WYAVSVLGVPAG"
     gene            3180..3265
                     /locus_tag="VLI40_07140"
     tRNA            3180..3265
                     /locus_tag="VLI40_07140"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3214..3216,aa:Leu,seq:taa)
     gene            complement(3382..4215)
                     /locus_tag="VLI40_07145"
     CDS             complement(3382..4215)
                     /locus_tag="VLI40_07145"
                     /inference="COORDINATES: protein motif:HMM:NF016024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rad52/Rad22 family DNA repair protein"
                     /protein_id="HSU96986.1"
                     /translation="MIARQETFNSKDAVWSALAAPVPAGTISWRQDGKPVARDGRHFA
                     RFVCYIEANTVRERLDTVVPGEWDLTLEMLPQIHGGDVDSDSVCAFKARLQVLGVIRE
                     DVGTGRDYKQAATDAFKRAAVRFGIGNELYSYEQNWVEVDGDGKYAKPVEDPATAYER
                     RHGSGAGKLSRPAVATDDVHAMKEANTLTDVDAVSCPKCGGRMWDNRLTKRNPKAPDY
                     KCRDRNCDGVVWPAKASGNNAEHDEAEAAEEVAAEVETPKAPARKSRAAKLALTDEIP
                     F"
     gene            4752..5273
                     /locus_tag="VLI40_07150"
     CDS             4752..5273
                     /locus_tag="VLI40_07150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96987.1"
                     /translation="MDKGSDFLKSQVHNAVVAHHAFVKALEDHESQAEDPRFRDLCTR
                     YMAIMRDHQRMLENYQSELGAPNAGVLKRALGATASAARDLADSVRESDFLRLVGDIV
                     MSRQCEDTFKTFREAGRTLGLPQLAAIGEAGERDHDSYNHDANRLVQQLFVEQVREGD
                     HAVRATSTAELRR"
     gene            5417..6415
                     /locus_tag="VLI40_07155"
     CDS             5417..6415
                     /locus_tag="VLI40_07155"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSU96988.1"
                     /translation="MTDVVALAAELLSIQSFTRDEGAAIDFVARWLVSRHWNVSIQEV
                     SPGRGNVWASRRGGGVTLSTHLDTVPPYHPPRLSGNRLYGRGACDAKGIAAAMMAAAD
                     QLASEGEERVDLLFVVGEEKGSDGARAANNLAATSRYLVNGEPTESKLASGCKGSLRF
                     IVRTHGREAHSAYPELGASAIEPLLRLLPTIHDVDFPSDPVLGATTVNIGTISGGTEA
                     NIIPGSAESEVMLRLVSDVEPIKRMIADWAHRGGADIEFGSTIPAQRFHVLDGYEVAP
                     VSYTSDIPLLGRWGTPLLFGPGSIHVAHTPDEYVDIDELRASVSTYASLVRQLLTQ"
     gene            6412..7488
                     /gene="asd"
                     /locus_tag="VLI40_07160"
     CDS             6412..7488
                     /gene="asd"
                     /locus_tag="VLI40_07160"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HSU96989.1"
                     /translation="MTANDIRRARIPVAVLGATGAVGQTFIRLLRDHPWFRVAEVAAS
                     ERSAGKRYADATHWLEGEMPAGVASLIVTSCTPDSVSSPIVFSALDSGVAGEVETAFA
                     RAGRFVCSNAKNHRMLSDVPLLIPEINAQHLAVIGAQRKRCGWTGAIVTNANCSSTVA
                     ALPLAPLHEAFGITKIFIATMQAVSGAGYPGVPSLDIMGNVIPYIADEEPKIEAEIGK
                     LLGALNGNVIESAPFRVTAHANRVPVEHGHTTCMSIGLASSATPEQVSEAILAWTGRK
                     EALGLPSRPDRPIVIAAAPDHPQPRRDVMLGGGMTVTVGRIRRDELLDVRMVAMGSNT
                     IRGAAGGAIMNAELLVTQGHVAGT"
     gene            7485..>8313
                     /locus_tag="VLI40_07165"
     CDS             7485..>8313
                     /locus_tag="VLI40_07165"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HSU96990.1"
                     /translation="MIVVKFGGTSVGDVDAICRAADVVASRVHRAPVVVVSAASGTTT
                     ELLGIAEQAARGQLIGALRSVEHIRERHVAMCDALLGNVATGADTTAEIAAMCDEVAS
                     LAEALTTLGHITPRSLDAVASFGEQMSALLVTEVFRARGIPAQHLDAREVIVTSDHFN
                     EAEPSLDAISDRARDRVAPMVRSGVVPVLGGYIGATATGVTTTLGRGGSDYTASLLGA
                     ALGADDIEIWTDVDGMLTADPRIVSDAQLISQIRFDEASELASFGAKVLHPNTIAPAV
                     "
BASE COUNT         1496 a         2702 c         2546 g         1569 t
ORIGIN      
        1 gtcgctcgtc gccttggcat agcgcgcgac accggagacc cagaagtggc cgccgagcag
       61 aatgtccaga tatccgcggg cgagaaccgc cgccgcgtgt gttcctgttc cgatatcggt
      121 gagcgcatcg gactccggga gggagccggt cgggaaacga tacccgcctg caacggcaag
      181 tcgtgcgttg ataccgtgcg gtgtgaagcg cgacgcatta ccgaatcgaa acgaatcgaa
      241 cagcaataac ttcgctgtca gctccgcgtc gccgattcca gttcgctcga tcgtctggaa
      301 cagctgcagt gcaacgccga acgacggatc gctcaacagc gcctgcattc ctggtgtcgc
      361 gagcggtgtg ggggcgccaa caacgccggt cgccgtgaca gccggcactc ccgtcgcagg
      421 atttgccgcg aacgcattca acgcgccgcg cacagtactg acgcgtgcat ccaccgcgcc
      481 ctgcacggtg cttccacgca tcgggaccag cgggccgttc aagtatagcg acgtgatcga
      541 tctaccgaac cccgtcgccg acgttacgag cgccgccgat ccggcgcact gcggatcgct
      601 cgcgcccgac ccggagcagt aggcgcgcac cgccgttgcc gccgtgatca cctgcgccgt
      661 gaatatcgag tcggtcgcgc gcgcgactgc atcgcccgcc gtggcgggat tgggacccag
      721 gttggcctct ttagcgccgg gattcgcgcg aaagaacacg ctcgtccgtg tgtgcacgat
      781 gggcaccatc gccgtgaccg acagccagcg tgagattccc gcctccaggg atatcggtac
      841 gttcgcgacc cggtccgtta cctgtgtgac cgtcttgccg accgatacgt tgattccaga
      901 cacccccgta attgcccgta agctgtcctg aaccggcttg aggatcgaca gctgcgccgc
      961 ccccacgcta tccaggctga accggccgcc aagtggctgg aggatccccg caacacctgg
     1021 cttcggggag acaaagagct ggtcccagta tgaccagtcg ctctcgatct tgatccggaa
     1081 gctgccggcc ggcgtgatcg atgcatcttc accgagcccg gtaatcgcct gggcgcccgc
     1141 cgcgccagcg tatagcgacg tcgcgagagt gaagattgct gcttggaacc agcgtcgggg
     1201 catgtgctct cggtaaaaat cgttgtaggc gcgacgcggg gacgttagca ttccggttcc
     1261 atccgtgtca accaaagcta agtgaggtaa gagctgcgca cgccacccac cattccgtgg
     1321 caggtcaccg ggaaccactg gttctcgctg ccatgcgtgc atccagccga cggctccatc
     1381 catggagtcg gagtcatctc gctcgcgcat cgcggggcga tagagttcgc aggcgccccc
     1441 gacttcgaga acggggcagg cgagcccctc ctgcggctga gcttcgagtc gaatggcgcg
     1501 ccgatcgagc tcgccgcgag ccgaatggcc tggcagaggg tgctcgaatg gcttccgacc
     1561 ttcaattcga cggtcggcga tctcgtcatt cgtggcacca tcttcgcgcc gtgcggtcgc
     1621 gccgcggact ttcctggatt cgtttacgcc atatcgatcg agaaccgcgg ccagtcggtc
     1681 gccgcagtca agtttcgcgc gcaaggcacg ctcgccgttc gccagcacag aattcgtacc
     1741 gcgcgccgct tcgatgacgc acacgtcgcg tcgctggccg acgacatcgt cacgctgcgc
     1801 ggaacgagtc gcggctccga gaccgccctg gcgctgaccg gcgattcgat ggtcggaacg
     1861 atcgccgaga gtacggatgg caccgcgcgc ttcgcgctcg ctcgcgaggc gtcgctgcaa
     1921 ccgggtgagc gtgtggacct cgcattgtac gttgccgctg gtccggaagt ggacggcgct
     1981 gtcgcgatgg tgcaacggat gcgtctccgc ggttggcgta cgctcgcctc gcagacacgc
     2041 gacgcaatct ccgcgctgca gcaatccacc ggagtaccgg cggcggatcg tctcatcaat
     2101 cggcatctga tgttcgcgta cttctacgcc gccggacgcg caatcgacga cgcacgctgg
     2161 tacgtcttca ggtcgcgcat tccatggtgc gagcaggcgc tgacggtgcg cgactacgaa
     2221 gcactgatgt ggctcgtgcc cgcatttcag cttgccgata ccgccctcgc gcgtgagctc
     2281 ctgctgcgaa cgtgcgagct gcacggatac gcgccgggcc gcggtatcaa ttacatggac
     2341 ggcactcctt tcgatgtggc gttctgtctc gatgccgcgg cggcctatcc ggtttccgtg
     2401 gatcgctacg tagcgcagac cggtgacgac cgcatcgtcg aggatgcacc gatcgccgaa
     2461 gcgctctatg cagcgaacga cgacatcgcc gcatcacgcc acggctcgct gccgttgtac
     2521 agaaccgacg caactccgtc gggcgcggat gcgaagctgc catacacgct gcatggtaac
     2581 gcgctcgtcg cggatgcact cgaagtgctc aagcagacgc tggacgagaa gaccgccgag
     2641 aatgttcaga acgccgacgc ggttcgcgct gccatcacgc gccagttcgc caccgacaag
     2701 gattcgtcgc gaacgttgct ctccaccgcg accgatctcg ccggtgaaac gtccatgcat
     2761 gatgatccgg tgggatccgt attctggctc ccgctgtatc acatgctctc ccgcgacgat
     2821 tccatctatc gacgcactgt tcgccggctc gagcaatcgg atgcggatca gacgcggatc
     2881 aacgtcgcgg agcgatgcgc aacactgatg ggccccgacg cggccaaaac ccttgaatgg
     2941 ttgcgcagag ccgacctcga tggtggtctt gcggcggaga tcgtggactc cgacggacgg
     3001 gcgatagcaa atggcggcga tgcgtcgctt tctgcactca ttgcgtattc ggtgtggtac
     3061 gcggtaagtg tactcggcgt acctgcgggg tgacgcggcc tgcgtcggcc atcgaccgac
     3121 tacgcaagtc accgatgcct cgtatattca tgtgctgacc gcgcgactcg cgcgtcatcg
     3181 ctcggatggc gaaatgggta gacgcgaggg acttaaaatc cctttcccac aaaagggaat
     3241 gccggttcga gtccggctcc gagcacttcg atgtcgagac gtgaattctc gtcgcatgtc
     3301 gtaaaagcgt agaaacaaag aggggaagcg aatcacagat tcgcttcccc tctttggtat
     3361 tacaggagat tcacttcaac gttagaacgg aatctcgtcc gtcagagcca gcttcgccgc
     3421 acgtgacttc cgcgcaggtg ccttcggtgt ctccacctcg gcggccactt cttccgcggc
     3481 ctcagcttca tcatgctccg cgttgtttcc gctcgccttc gccggccaca cgactccatc
     3541 gcagtttctg tctctgcact tgtagtctgg cgccttgggg ttgcgcttgg tcaggcggtt
     3601 gtcccacatg cggccaccgc acttggggca gcttacagcg tcgacgtcgg tcagcgtgtt
     3661 cgcttccttc atcgcatgca cgtcgtcagt tgcaactgca ggacggctga gcttcccggc
     3721 gccgcttccg tgccggcgct cgtaagccgt cgccggatct tcgaccggct tggcgtactt
     3781 gccgtcgcca tccacctcga cccagttctg ctcgtacgag tacagctcgt ttccaattcc
     3841 gaaccgcacc gctgcacgct tgaacgcatc cgtcgcagcc tgcttgtagt cgcgccccgt
     3901 tccgacgtcc tcacggatca cgccgagtac ctgaagccgc gccttgaacg cgcagaccga
     3961 atccgaatcg acgtcaccgc cgtggatctg cggcagcatc tcgagagtca ggtcccactc
     4021 acccgggacc actgtgtcga ggcgctcccg caccgtgttc gcttcgatgt agcacacgaa
     4081 gcgcgcgaag tgacgtccat cacgagctac cggcttgcca tcctggcgcc acgagatagt
     4141 tcccgcaggc accggtgccg ccagcgctga ccagacagcg tccttcgaat tgaatgtttc
     4201 ctgtctcgca atcatttccg tttcctcgcc ctggtcttgc cagagctcct gggtctaggc
     4261 gcatccgcgc tcattgtccg aacaaccctc cgtacctccg caactgcctt gcagctgggt
     4321 ccgtgctcgc agtaccagcc gtaccggtcg aagtacacga gatgcagcgt cgcgtccttc
     4381 tcccgcctct cccacacctt ccacaactcg gttaccgtcg tgtccggccc acattgaagc
     4441 catggattca gcggctcaaa atcgtagctg ggcggtacct gcggaatctg gaccttgcgt
     4501 gctttccgag cccgggcgcg gcctttgacc tgtttcattg gcacgtgcca agtcgttggt
     4561 aattcaccac ttacgttgcg gttttcggtg actgttcggt atgcttaaac ctaatgttct
     4621 gcgtgtttca aagcaagggc ccgatgtgga caacccacga atattcgacc gggaagcacg
     4681 gctccgccca tgtggctcgg gacgtgcttg cccacctgtg gctaaacctt ttttacctca
     4741 cggaggactg aatggacaaa ggcagcgact tcctcaaatc acaggttcac aacgccgtgg
     4801 tggcgcatca cgccttcgtc aaggcgctcg aggatcacga atcccaggca gaagatccgc
     4861 gctttcgcga tctctgtaca cgctacatgg ccataatgcg cgatcatcag cgcatgctcg
     4921 agaactacca gagcgagctc ggcgcaccga acgccggcgt ccttaaacgc gccctcggcg
     4981 caaccgccag tgccgcccgc gacctcgccg actcggtccg ggaaagcgac ttcctgcgcc
     5041 tcgtaggcga tatcgtcatg tcccgtcagt gcgaggatac gttcaagacg ttccgcgaag
     5101 ccggccgtac gcttggcctc ccgcagctcg cggcaatcgg tgaggcgggc gagcgtgacc
     5161 acgattccta caaccatgac gcgaaccggc tcgtgcagca gctgttcgtc gagcaggtgc
     5221 gggaaggcga tcatgcggtg cgcgcgactt ccaccgcgga gctcaggcgt tagaggaaga
     5281 aagcgctcct gcgtaccggc aggtcatctc gcctgccggt tgtccataca gcctatgcct
     5341 gcccgctgag cccgctacac agcgcgctca ccacaatacg ctcccgacgc gatacctctg
     5401 ccactaactt gcgcgcatga ccgatgtcgt cgcgctcgcc gcagaactgc tgtcgataca
     5461 atcatttacc agagacgagg gagctgcgat cgacttcgtc gcacgctggc tcgtgagccg
     5521 gcactggaac gtgtccattc aggaggtctc cccgggacgc ggcaatgtgt gggcgtcacg
     5581 ccgcggtggt ggagtgacac tttccacgca ccttgatact gtgccgccat accatccccc
     5641 gcggctcagc ggcaaccgcc tctacggacg cggcgcgtgc gacgcgaagg ggatcgcggc
     5701 tgcaatgatg gcggccgccg accagcttgc aagcgaaggc gaagaacgcg ttgatcttct
     5761 gtttgtagtt ggcgaggaga agggatccga tggtgcgcgc gccgcaaaca atctcgccgc
     5821 gaccagtcgc tacctcgtga atggcgagcc aactgaaagc aagctggcga gcgggtgcaa
     5881 gggatctctg cgcttcatcg tccgcacgca cggcagggag gcgcattccg catatccgga
     5941 gctcggcgca tccgccatcg agccgctcct gcgtctgctg cccaccattc acgacgtcga
     6001 tttcccgtcg gatccagtgc tcggcgcgac gactgtcaac atcggcacga tcagcggagg
     6061 aaccgaggcg aacatcatcc ccggtagtgc ggagtcggaa gtgatgctgc ggctcgtgag
     6121 cgatgtcgag cccatcaagc gcatgatcgc tgactgggcg caccgcggag gcgccgacat
     6181 cgagttcgga tccaccattc cggcgcagcg ctttcacgtg ctggatggct acgaagtcgc
     6241 accggtgtcc tacacatccg acatcccgct gctcggccgc tggggaactc cgctcctgtt
     6301 cgggccaggc tccatacacg tcgcccacac acccgacgaa tacgtcgaca tcgatgagct
     6361 tcgcgcgagt gtctcgacgt atgcttcact tgtccggcaa ctgttgaccc aatgacagcc
     6421 aacgatatca ggcgcgctcg aattccggtc gcggtgctcg gcgccacggg cgcagtgggc
     6481 cagactttca tccggctgct gcgcgatcat ccatggtttc gcgttgcgga ggtggccgcg
     6541 tccgagaggt ccgcgggcaa gcggtacgcg gatgcgacac actggctcga aggagagatg
     6601 cctgctggtg tcgcgtcact catcgtaaca tcgtgcacgc cggattcggt ttcgtctccg
     6661 atagttttct cagcgctcga ctccggagtc gcgggcgagg tggagacggc cttcgcgcgc
     6721 gccggaagat tcgtttgcag caacgcgaag aatcaccgca tgctgagcga cgtgccgttg
     6781 ctcatccccg agatcaacgc gcagcatctg gcggtaatcg gcgcgcagcg caagcgctgt
     6841 ggctggaccg gtgcgatcgt cacgaatgcg aactgctcat ccactgttgc cgcgcttccg
     6901 ctcgcgccgc tacacgaagc gttcggaatc acgaagatct tcatcgcaac catgcaggcg
     6961 gtctcgggcg ccggttatcc cggtgtgccg tcgctcgaca taatgggtaa cgtcatcccg
     7021 tacatcgcgg acgaggagcc caagatcgaa gcagagatcg gcaagttgct cggcgccctg
     7081 aacggtaatg tcatcgagtc agcaccattc cgcgtgacag cacacgcgaa tcgtgttccg
     7141 gtcgagcacg gacacactac ctgcatgtcg atcggacttg cttcatccgc tacgccggag
     7201 caggtgtcag aggctatcct ggcgtggacg ggtcgaaagg aagcgctcgg tctcccatcg
     7261 cgacccgatc ggccaattgt cattgcggcg gcgccggatc acccgcagcc gcgccgggat
     7321 gtaatgcttg gcggcggaat gacggtaacg gtgggacgca tccggcgcga cgagctgctc
     7381 gacgtgcgaa tggtggcaat gggcagcaac accattcgtg gcgcggcggg cggcgccata
     7441 atgaacgctg agctgcttgt cacgcagggt cacgtggcag gtacgtgata gtcgtcaagt
     7501 ttggcggcac ctccgttggc gacgtggatg cgatctgccg tgccgcggac gtcgtcgcga
     7561 gccgcgtgca tcgtgcgccg gtagtggtcg tctccgcagc cagcggcacc acgaccgagc
     7621 tgctcggcat cgcggaacag gcggcgcgtg gccagctgat tggtgcgctc cggtcagtcg
     7681 agcacatacg cgagcgtcat gtggcgatgt gcgacgctct gcttggcaat gtcgcgactg
     7741 gtgccgatac tactgccgag attgcggcga tgtgcgacga ggtcgcgagc ctcgccgagg
     7801 cgcttacgac acttggtcac ataacgccgc gcagcctcga tgccgttgcg tcgttcggcg
     7861 agcagatgtc ggctctgctg gtcacggaag tgttccgcgc acgcgggatt ccagcgcagc
     7921 acctcgacgc gcgcgaagtc atcgtcacca gcgaccattt caacgaagcg gagccgagcc
     7981 tggatgcgat ctccgatcgc gcgcgcgacc gcgtcgcgcc gatggttcgg tccggagtcg
     8041 ttcccgtgct tggcggctac atcggtgcca cggcgaccgg cgtgacgacg acactcggtc
     8101 gcggcggctc ggactacacc gcatcactgc tcggcgcggc gctcggagcc gatgacatcg
     8161 agatatggac cgatgtcgat ggaatgctta ccgccgaccc gcgtatcgtg agtgacgcgc
     8221 agctcatctc gcaaatccga ttcgacgagg cgtcggagct cgcgtcgttc ggcgcgaagg
     8281 tactgcatcc gaatacaatt gcgccggcag tga
//
LOCUS       DATIMD010000319         5571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2721635, whole genome shotgun sequence.
ACCESSION   DATIMD010000319 DATIMD010000000
VERSION     DATIMD010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5571
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2721635"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..429)
                     /locus_tag="VLI40_07170"
     CDS             complement(<1..429)
                     /locus_tag="VLI40_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HSU96991.1"
                     /translation="MSNATRIEKDPLGELAVPADAMYGVQTLRAVQNFPISGIRPLPA
                     FVDAVVRIKRAAALTHKETGRLEARLADAIVAAADEVLDGKWRDQFIVDVYQAGAGTS
                     HNMNINEVLANRANEMLGSERGRYSPVHPNDHVNMAQSTND"
     gene            complement(407..1057)
                     /locus_tag="VLI40_07175"
     CDS             complement(407..1057)
                     /locus_tag="VLI40_07175"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSU96992.1"
                     /translation="MRILSRTVGAFQENAYLVVDDETGDAVIVDPGADPDDIIAMIES
                     SGATLRAVWITHAHLDHIGAISAIRRRYAGVPVHVHPLDRPVYEAQSVFAESYQVPFE
                     QPDAADADLAHGDVMRVGNLSFDVIHLPGHSPGHVVFHGHGIVLGGDVLFAGSIGRTD
                     LPMANPEHMQDSLRTIAALPPETVVYPGHGAATTIGAELNSNPFLNGMANVKRNAD"
     gene            complement(1054..2037)
                     /gene="trxB"
                     /locus_tag="VLI40_07180"
     CDS             complement(1054..2037)
                     /gene="trxB"
                     /locus_tag="VLI40_07180"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HSU96993.1"
                     /translation="MSKTFEYDVIIVGAGPAGMTAGMYAGRSMLKTVIIERGGSGGEL
                     LNTEAIEDYPGFEHIEGWDLAQRFESHAKKFGAEFHQGVVLTVKQLRDGTFEIETESG
                     DVYHAPTAIITAGGTPIKLGIPGEMEYAGKGVSYCAICDGAFFKGHTIAVVGGGDAAA
                     EESDFLTRYAEKVYLIHRRDELRASKILQKRLFENPKIEVIWDTLVERVEADVQGFVH
                     NLKLRNVKTGAERDLAATAMFVFIGFRPNTGIIEGHVDHDEMGYLLTDTNMETSIDGL
                     FAAGDVRSQLTRQVTTAAGDGTTAAIAAEKYLASLRDSSVGRIVATGGYAV"
     gene            complement(2044..2784)
                     /locus_tag="VLI40_07185"
     CDS             complement(2044..2784)
                     /locus_tag="VLI40_07185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96994.1"
                     /translation="MSGPDGNDYGAIVIVGGGCYGSYYVRQLDRARAAGAISFDRLIV
                     VDRSPECAVTQMGSDADVVISEWKDFFADYLATAPDDSRDAIVPSPLMPHLMYQWLRD
                     RAASRWPQRTVETRALTLEPDTPWKSAAPDGTFYASYATWTCPINCVEPRLCPHTRGE
                     RSWTMPRAAAELVARSADAGEPLQGPVIFHCSHRAFGVGMFDTCDVVAADRLVQRVAA
                     DSAANVLVGTVSHCHGAFNILHVGAETS"
     gene            complement(2771..3502)
                     /locus_tag="VLI40_07190"
     CDS             complement(2771..3502)
                     /locus_tag="VLI40_07190"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU96995.1"
                     /translation="MEISGRIALVTGGAHRVGRALSVALADAGMRVAINYNSAAAEAD
                     ALVRELSTRGHDCRAYEADLTQPDAPRSLIESVTRDFGGLDVLVNSAAVMQRTPVDDV
                     IVAEWDRMFALNLRAPFFLAQAARPYLRNAKGCIVNLADLAAFETWPEYIPHGISKAG
                     VVQMTRALARAFAPDVRVNAIAPGAVLLPDNWDDTTRAHFAATTPLRRIGSPNDVAEA
                     MLYLLRADYVTGDTLLVDGGRHVRT"
     gene            complement(3521..4375)
                     /locus_tag="VLI40_07195"
     CDS             complement(3521..4375)
                     /locus_tag="VLI40_07195"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HSU96996.1"
                     /translation="MNDRGSEPLDERYVDLHAHSTASDGAVSPAELVEAACRAKLQAI
                     AITDHDTIAGNDEAFATGASLGIRVVRGCELSAYDRDFEVHLLALHIRHSEAIRPSLE
                     GFQRERVDRGYAIVERLSIAGVPVNIEDVLAEAAGGALGRPHIARAMIRAGHVADHRD
                     AFDRYLGAGKPAYVPKPRLDVADAIGLAHSAGALAVWAHPGRDGTRERLVRLAALGLD
                     GVEVRHPGHTPGDTQRLGRLAEELDLVPSGGSDWHGATEGYRTLGNMHVPESWLDMQD
                     VRLATRVS"
     gene            complement(4372..4638)
                     /locus_tag="VLI40_07200"
     CDS             complement(4372..4638)
                     /locus_tag="VLI40_07200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96997.1"
                     /translation="MPFRTVTVDGAAWRVQPTGYVTANTKDEFALIFARDVGTARETR
                     VVRYSPVGARWREQSFASLTDDDLRRLFAQSQPSATSPEAFYAR"
     gene            complement(4639..4896)
                     /locus_tag="VLI40_07205"
     CDS             complement(4639..4896)
                     /locus_tag="VLI40_07205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU96998.1"
                     /translation="MSRALTIQRTTIPPSERARYLTRLAERAAHYASASCRFWVFEDP
                     GLRNAFVEFTEADDAATLAEAVASAPEPGSGPLRIYHQVEF"
     gene            complement(4899..>5571)
                     /locus_tag="VLI40_07210"
     CDS             complement(4899..>5571)
                     /locus_tag="VLI40_07210"
                     /inference="COORDINATES: protein motif:HMM:NF012424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HSU96999.1"
                     /translation="LISDHMVASRRTSAHVTSFMEMDFTRIAKIRANKRREFEAATGE
                     KLSYMPFIIKATVDAIKQYPIMNSSVAGTNVIYRRPVNIGIAVALDWGLLVPVIKNAD
                     DLSLTGLTRALNDLANRARSKKLSPQEVQDGTFTITNPGGFGSLMGTPIINQPQVAIM
                     GVGAIEKRPKVISGVDGEDTIAIRTCAYFSISFDHRVIDGAVADQFLAQVKRNIESFP
                     ETGVI"
BASE COUNT         1058 a         1759 c         1701 g         1053 t
ORIGIN      
        1 gtcgttggtg gactgcgcca tgttgacgtg atcgttcgga tgaaccggcg agtacctgcc
       61 gcgctcgctg ccgagcatct cgttggcgcg attcgcgagc acttcgttga tgttcatgtt
      121 gtgcgatgta ccggcacctg cctgatacac gtcgacgatg aactggtcgc gccacttgcc
      181 gtcgagtact tcgtcagctg cagcaactat ggcgtcggcg agtcgggcct cgagacggcc
      241 cgtctccttg tgggtcagcg cagccgcacg cttgatgcgg accaccgcgt cgacaaaggc
      301 agggagcgga cgaatgccgc tgatcgggaa gttctgcacg gcgcgcagcg tctgcacgcc
      361 atacatcgcg tcagccggta cggcgagctc gcctagaggg tccttctcaa tccgcgttgc
      421 gtttgacatt tgccattccg ttcagaaaag ggttgctgtt gagctcggcg ccgatcgtgg
      481 tcgccgcacc atggccggga tagacgacgg tctcaggagg gagtgctgcg atcgtgcgca
      541 gagaatcctg catgtgctcc ggattcgcca tgggaagatc ggtgcgtccg atcgatccgg
      601 cgaacagtac gtcaccaccg agcacgatgc cgtggccgtg gaacacgacg tggccggggc
      661 tgtggccggg tagatgaatg acgtcgaacg acaaattgcc gacgcgcatc acgtcaccgt
      721 gagcaagatc agcgtccgcc gcgtcaggtt gctcgaacgg cacctggtac gactccgcaa
      781 agaccgattg cgcctcgtaa accggccggt cgagcggatg cacgtgaacc ggaacgcctg
      841 catagcggcg gcggatcgca gagatggcgc cgatgtggtc caggtgcgcg tgggtgatcc
      901 agaccgcgcg aagcgtcgca ccgctcgatt cgatcattgc gatgatgtcg tccggatcgg
      961 caccgggatc gactattacg gcatcgccgg tctcgtcgtc gacaaccaga tacgcgttct
     1021 cctgaaacgc gccgacggtg cgcgacagaa tcctcacact gcgtagccgc ccgtcgccac
     1081 gatccggccg acggacgaat cgcgcaatga cgcgagatat ttctcggcgg caatggccgc
     1141 tgtcgttccg tcgcccgcgg cggtagtcac ctgacgagta agctgcgagc gcacgtcgcc
     1201 ggccgcgaac agtccgtcga tcgacgtctc catgttcgtg tcggtgagca ggtagcccat
     1261 ctcgtcatga tcgacatggc cttcgatgat gccggtgttg ggacggaatc cgatgaacac
     1321 gaacatcgcc gtagcggcaa gatcgcgctc cgctcccgtc ttcacgttgc gaagtttgag
     1381 attgtgcaca aaaccctgca cgtccgcttc gacacgttcc accagcgtat cccagattac
     1441 ctcgatcttg ggattctcga acaggcgctt ctgcagaatc ttcgacgcgc gcagttcgtc
     1501 gcgccgatgg atcagataca ctttctccgc gtagcgcgtg aggaagtcac tctcttcggc
     1561 ggctgcatcg ccaccgccga caacggcgat ggtgtggccc ttgaagaatg caccgtcgca
     1621 gatcgcgcag taggacacac ccttcccggc gtattccatc tcgccaggaa tgccaagctt
     1681 gatcggagtc ccgccggcag ttatgatcgc ggtcggtgcg tggtacacgt cgcctgattc
     1741 ggtctcgatc tcgaacgttc cgtcccgaag ctgtttgacg gtgagcacga cgccctgatg
     1801 aaactcggcg ccgaatttct ttgcatgact ctcgaaacgc tgagcgagat cccagccctc
     1861 gatgtgctcg aagcccggat aatcttcgat cgcttcggtg ttgagcagct caccgcccga
     1921 accgccgcgc tcgatgatca ctgtcttcag catggatcgt ccggcgtaca taccggctgt
     1981 cattcccgcg ggaccggcac cgacgattat gacgtcatat tcaaaagtct tgctcatgaa
     2041 tttctatgag gtttcagcgc cgacgtgaag aatgttgaac gcaccgtggc aatgcgaaac
     2101 ggtcccgacg agcacgttcg cggctgaatc agcggccacg cgttggacca gcctgtcggc
     2161 ggctaccacg tcgcacgtat cgaacattcc aaccccgaac gcgcgatggc tgcagtgaaa
     2221 tataaccggc ccctgcaatg gctcgcccgc gtccgccgac cgcgcgacaa gctctgccgc
     2281 ggcgcgcggc atggtccagc ttcgctcgcc ccgggtatgc gggcagagcc gcggctcgac
     2341 acagttgatg gggcaggtcc acgtcgcgta gctggcgtaa aatgtcccgt cgggcgccgc
     2401 actcttccat ggcgtatccg gctcgagcgt cagcgcgcga gtctcgacgg tacgttgcgg
     2461 ccaacgcgat gctgctctgt cccgcagcca ctgatacatc agatgcggca tcaacggcga
     2521 cggcacaatt gcgtcacgac tgtcgtccgg cgcggtggca agataatccg cgaagaaatc
     2581 cttccattcc gaaatcacga cgtcggcgtc cgagcccatc tgtgtaaccg cgcattccgg
     2641 cgacctgtcg accacgatga gtctgtcgaa ggagatcgca ccggccgcac gcgcgcgatc
     2701 gagctgccgc acgtagtagg aaccgtagca gccgccgccg acgattacta tcgcgccgta
     2761 gtcgttgccg tcaggtcctg acatggcgtc cgccatcgac cagaagcgta tctccggtca
     2821 cgtaatcggc gcgcaacaga tacagcattg cctccgccac gtcgttcggt gatccgatgc
     2881 ggcgcaacgg cgtcgtcgct gcgaaatgag cgcgtgtggt gtcgtcccag ttatccggca
     2941 gcagaacggc accgggcgcg atcgcgttga cacgcacgtc gggagcgaaa gcgcgggcca
     3001 gtgcgcgggt catctgaacg acaccggcct tgcttattcc gtgcgggatg tactccggcc
     3061 atgtctcgaa cgcggcgaga tcggcaagat tgacgatgca acccttcgca ttgcgcagat
     3121 atggccgcgc ggcctgcgca agaaaaaatg gggcgcgcag gttcagcgcg aacatccggt
     3181 cccattctgc gacgatcacg tcatcgactg gcgttcgctg catcacagcg gcggaattga
     3241 ccagcacgtc gagtccgcca aagtcacgtg tcactgactc gatgagcgag cgtggcgcat
     3301 cgggttgtgt gagatcggcc tcgtatgcgc gacaatcgtg accgcgcgtc gagagctcgc
     3361 gcacaagtgc gtccgcttct gctgcggccg agttgtagtt gatcgcgacg cgcatgccag
     3421 catcagcgag cgctacgctc agcgcgcgcc ccacgcgatg cgcgccgccg gtgacgagag
     3481 caatccgtcc gctgatctcc atgctatctc acaatacgcg ctacgatacg cgcgtggcca
     3541 gccggacatc ctgcatatcc agccacgatt caggaacgtg catgttgccg agtgtacgat
     3601 agccttccgt tgcaccgtgc cagtccgagc caccactcgg caccagatcc agctcttccg
     3661 cgagacggcc gagtcgctgg gtatcaccgg gggtatggcc gggatgtcgt acttcgacac
     3721 cgtccaggcc gagcgcggcg agtcgcacga ggcgctcgcg cgtcccgtcg cggccgggat
     3781 gtgcccagac cgcgagtgca ccagccgaat gcgcgagtcc gatcgcgtcc gcgacatcga
     3841 gccgcggctt gggcacgtag gccggcttgc ccgcaccgag atatctgtca aacgcgtcgc
     3901 gatgatcggc gacgtgtccg gcgcgaatca tcgcacgcgc gatgtgggga cgtccaagag
     3961 caccgcccgc ggcctccgcg agcacatcct cgatgttcac gggcacgcca gcgatcgaaa
     4021 gtcgctcgac gatcgcgtag ccacggtcga cacgctcgcg ctgaaagcct tccaggcttg
     4081 ggcgaatcgc ttctgaatgc cgtatgtgca gcgccaggag atgaacctcg aagtcacgat
     4141 cgtacgcact cagctcgcag ccgcgcacaa ctctgattcc aagactcgcg ccggttgcaa
     4201 aggcctcgtc gtttcccgct atggtgtcgt gatcggtgat cgcgattgcc tgaagcttcg
     4261 cacggcaggc tgcctcgaca agctccgccg gtgacactgc tccatccgag gccgtggagt
     4321 gcgcatgcag atctacgtaa cgctcatcca gcggctcgct gccgcggtca ttcatcgagc
     4381 gtagaacgcc tcgggcgaag tcgcgcttgg ctgcgactgg gcaaagagtc tgcggagatc
     4441 atcgtcagtg agtgacgcaa atgattgctc gcgccaacgc gcgccgaccg gcgaataacg
     4501 caccacacgc gtttcgcgcg cggtgccgac gtcacgtgcg aaaatgaggg cgaattcgtc
     4561 cttggtgttg gcggtgacgt atcccgtcgg ttgcacgcgc catgcagcgc catcgactgt
     4621 cacagtacga aaaggcatct agaactccac ttgatggtaa atacgcagag gaccggaacc
     4681 gggttccggc gccgacgcga ctgcttcggc gagcgtcgcc gcgtcatctg cctcggtgaa
     4741 ttcgacgaac gcgtttcgca gacccggatc ctcgaagacc cagaaacgac agctggcaga
     4801 tgcgtagtgc gccgcccgct ccgcgaggcg cgtcagatat cgcgcgcgct cactcggcgg
     4861 tatcgtcgtc cgctgaattg tgagtgcgcg cgacatgatc agatcacccc ggtctctggg
     4921 aacgactcga tgtttcgctt gacctgcgcc agaaactgat cggccacggc gccgtcgatc
     4981 acacggtggt cgaacgaaat ggagaagtac gcgcaggtgc gaatcgcgat cgtatcctca
     5041 ccgtccactc cggatatgac cttgggtcgc ttctcgatgg cacccacgcc catgatcgcc
     5101 acctgcggct ggttgatgat cggcgttccc atgagcgagc cgaatccacc tggattggtg
     5161 atcgtgaacg tgccatcctg tacttcctgc ggtgacagct tcttgctgcg cgcacggttg
     5221 gcaagatcgt tgagcgcgcg agtcagccca gtcaatgaca ggtcgtccgc gttcttgatt
     5281 acgggcacaa gcaatcccca atcaagcgca acggcaatgc cgatgttcac cggccggcga
     5341 taaatcacgt tggtgccggc gacggacgag ttcatgatcg gatactgctt gatcgcgtcc
     5401 accgtcgctt tgatgatgaa cggcatgtac gagagcttct caccagtcgc cgcttcgaac
     5461 tcgcgccgct tgttcgcgcg aatcttcgcg atgcgcgtga agtccatctc catgaacgat
     5521 gtcacgtgcg ccgatgtacg acgggaagcg accatatggt cgctgatcag c
//
LOCUS       DATIMD010000320         2695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2432233, whole genome shotgun sequence.
ACCESSION   DATIMD010000320 DATIMD010000000
VERSION     DATIMD010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2695
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2432233"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..368
                     /locus_tag="VLI40_07215"
     CDS             <1..368
                     /locus_tag="VLI40_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97000.1"
                     /translation="STAVPGQAVVDAGSKALGREPMRGVAGEGFGALVGHEDVLVSAM
                     SEEHGILDLSKTAWRPRVGDTVRIVPNHVCIVVHLNDVLYAVDGDRVTGVWPVAARGR
                     MAPFTDEEASAAAPAEDLL"
     gene            complement(393..2015)
                     /locus_tag="VLI40_07220"
     CDS             complement(393..2015)
                     /locus_tag="VLI40_07220"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HSU97001.1"
                     /translation="MRKFLLVALGISMGAAPLAATDTYPRQPGVDVQHYKFALSLNDS
                     TNEISGDATITVRFVKSGLTSFFLDLATPAAGKGMTVTRVTGDSSSLRYTHSGDHLTI
                     SLARPTTAGELRRFNVTYHGIPASGLYIGQNRYGERAFFSWNWPDKARQWLPMIDHPS
                     DKATSEFIITAPAKYAVVSNGLLQDEILLGDGRKVTHWKQSVPIASWLNAIGVEQFAV
                     HHAGMVKGVELQTWVAHQDRDNGITTFEEPARQAIEFYSEHIGPYSYEKLANVSAAFG
                     GGGTEHASAIFYGEKVVTDKPATAIVAHEVAHQWFGDSITESDWDDAWLSEGFATYFT
                     LLFTEHYSGRDAFVSGLVRARTTALAAEKKFNEPVVHRNISDLRGVIPPLVYQKGAWV
                     LHMLRGQIGTDTFWKGIREYYARYRNSNASTDDLRRVMEEVSGQKLGWFFDQWLNRDY
                     SPALTGTWHYNSAAKIVSIDLTQAQSGGVYRLPLDVGLVGDSAGVAPVIAKIEMTTAT
                     QHFDIPVASQPRDVVLDPNTWMLMQPPEFTKR"
     gene            complement(2097..2387)
                     /locus_tag="VLI40_07225"
     CDS             complement(2097..2387)
                     /locus_tag="VLI40_07225"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HSU97002.1"
                     /translation="MAITIEIPSALRMHSHGSAVVTIDTHGQSCDSIGAALGALESQY
                     PGVLDRVVTEQGDLRPHVNVFVDGENSRFANGLSTPIRDPATITILAAISGG"
     gene            complement(2390..>2695)
                     /locus_tag="VLI40_07230"
     CDS             complement(2390..>2695)
                     /locus_tag="VLI40_07230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HSU97003.1"
                     /translation="VPIESDQFRCVPEAKLRVYRTSDAGASWKPLANGLPQKDAYETI
                     LRDALSADSLPSAGIYFGTRSGKLFGSANHGENWNEIAGGLPSIVCVKAAVVRTPTN"
BASE COUNT          496 a          757 c          885 g          557 t
ORIGIN      
        1 tgagcacagc cgtccccggc caggcagtgg tcgatgcggg ttccaaggcg ctcggccgcg
       61 agccgatgcg cggtgtggca ggcgaaggat tcggcgcact cgtgggacac gaggacgttc
      121 tcgtgtccgc aatgtcggag gagcacggca tactcgatct gtcgaagacg gcctggcgtc
      181 ctcgtgttgg agacaccgtg cgcatcgtgc cgaatcacgt ctgtatcgtg gttcacctga
      241 acgacgtgtt gtatgccgtg gacggcgatc gcgtgactgg cgtctggccc gttgccgcgc
      301 gcggacgcat ggcgccattc acggatgaag aagcgagcgc cgcggctcca gccgaggatc
      361 tgttgtagaa gtcgtgcgag tcagggactg gcctatcgct tcgtgaattc tggcggttgc
      421 atcagcatcc aggtgttcgg atccaggacg acgtcccgcg gttgcgaggc aaccggaatg
      481 tcgaagtgtt gagttgcggt agtcatctcg atcttcgcga tcacgggagc aacaccggca
      541 ctgtcaccga ccaggcccac gtcgagtggc aaacgataaa ctccgcccga ctgagcctgg
      601 gtgagatcga tcgagactat cttcgcggct gaattgtagt gccacgttcc ggtgagagct
      661 ggtgagtaat cgcggttgag ccactgatcg aagaaccagc ccagcttctg gccggatact
      721 tcttccatca cgcgacgcag gtcgtcggtg gatgcgttgg agttgcgata gcgcgcgtag
      781 tattcgcgaa ttcccttcca gaaggtgtcg gtgccgatct gcccgcggag catgtgaagc
      841 acccatgcgc ccttctgata aacgagcggt gggatgactc cacgcagatc cgagatgttc
      901 ctgtgcacta caggctcatt gaatttcttc tcggcggcaa gtgcagtcgt gcgtgcgcgt
      961 accaatcctg agacgaacgc atcgcgaccg gaataatgtt cggtgaacag cagcgtgaag
     1021 taggtcgcaa agccttcact gagccatgcg tcgtcccaat cgctctcggt tatggaatcg
     1081 ccgaaccact gatgcgcgac ttcgtgtgcg acaatggcgg tcgcgggctt atcagtgact
     1141 actttttcgc cgtagaagat cgcgctcgcg tgttcggtgc cgcctccgcc aaaggccgcg
     1201 gatacgttgg cgagtttttc gtacgagtac ggtccgatgt gctcgctgta gaattcgatg
     1261 gcctgtcgtg ccggctcttc gaaagtcgtg attccattgt cgcggtcctg gtgtgcgacc
     1321 catgtctgca gctcgacacc cttcaccatg ccggcgtgat gcaccgcgaa ctgctcgaca
     1381 ccgatcgcgt tgagccacga ggcgatcggg accgactgct tccagtgggt gaccttgcga
     1441 ccgtcgccga gcaggatttc gtcctgcagc agaccgttgg atactaccgc gtattttgcc
     1501 ggcgccgtga tgatgaattc acttgtcgcc ttgtcggacg gatggtcgat catcggaagc
     1561 cactggcgcg ccttgtcggg ccagttccac gagaagaacg cgcgctcgcc gtagcggttc
     1621 tggccgatgt agagtccgct tgcgggaatt ccgtgatatg taacgttgaa tctgcgcagc
     1681 tcgccggcgg ttgtcggtct ggcgagagag atcgtgagat gatcgccgga gtgggtgtag
     1741 cgcagcgagc tgctgtcgcc agtaacacgg gtgacggtca ttcccttgcc cgctgcgggt
     1801 gtggcgagat cgaggaaaaa gctggtgagg ccactcttca cgaaccggac agtgatggtc
     1861 gcgtcgccgc ttatctcgtt ggtggaatcg ttgagggaga gcgcgaactt gtagtgctga
     1921 acgtcgacgc cgggttgtcg cgggtacgta tcggtggcgg cgagcggagc tgcgcccatg
     1981 gaaataccga gtgccaccag aagaaatttg cgcatcgccg cctcgcggtc agatttcgga
     2041 taaaatatcc aatacagata gggcgcgcgc aagaacgctt ctcgccggag ccggcgctat
     2101 cctccgctga tggcagcgag aatcgtgatc gttgccggat cgcggatcgg ggtcgacagg
     2161 ccgttcgcga agcgactgtt ctcgccgtcg acgaaaacgt tgacgtgcgg gcgaagatca
     2221 ccctgctcgg tcaccacgcg gtcgagcacg cccggatact gggactccag cgcgccgagt
     2281 gccgcgccga tggagtcgca cgattgtccg tgcgtgtcga tggtgactac ggcgctcccg
     2341 tgcgagtgca tgcggagcgc cgaggggatc tcgatggtga ttgccacgat cagttcgtcg
     2401 gagtgcggac taccgcggcc ttgacgcaga cgatcgaggg aagtccgcca gcgatctcgt
     2461 tccagttctc gccgtggttg gcagagccga agagcttacc gctgcgcgtg ccgaagtaga
     2521 tgcctgccga cggaagtgaa tcagcgctca atgcatcgcg gaggatggtt tcgtacgcat
     2581 ccttttgtgg aagtccgttg gcaagcggct tccaggatgc gccggcatcg ctggttcgat
     2641 agacgcgcag cttggcctcc gggacgcaac gaaactggtc cgactcgatc gggac
//
LOCUS       DATIMD010000321         1519 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2144572, whole genome shotgun sequence.
ACCESSION   DATIMD010000321 DATIMD010000000
VERSION     DATIMD010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2144572"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..590
                     /locus_tag="VLI40_07235"
     CDS             <1..590
                     /locus_tag="VLI40_07235"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSU97004.1"
                     /translation="VWNRLLDPAAIQVDENDVVRTKPEILASLRPLGPGLVGHLAIDD
                     FNVALHGNVAVVTHEDNEYLDYHGQVIRSRFRMTDTWVDGASGWRLLGSQVLAVQKDP
                     PAIKLDRATLCGYNGRYEMTSDIAATMQCAGDSLVMKRAGHPDRFFLPEVRDVFFEPG
                     QPRTRRIFQRDAQGRITGFVDRREERDVAWKRRGS"
     gene            complement(587..>1519)
                     /locus_tag="VLI40_07240"
     CDS             complement(587..>1519)
                     /locus_tag="VLI40_07240"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU97005.1"
                     /translation="LLGGWIVDASSWRFVFVIMIPFAIAGAIVVTVAGRSAKETRSAA
                     TVDYAGAALMTLGLGAVVGALMLGSDRGFTTPYPAAIGVAGIVLLVAFIIVERHTKEP
                     LLPPDTFASKKFTGVNAATFAIYAALTGLFFLLMLQLQNVLGYSALAAGASLMPINLL
                     LLVISPFAGRFAERRGARLPMTAGALVAAVGMLLFALVRPGASYLTSVLPAAIVFGIG
                     LSSLVAPLTNVALTSLGHERAGLASGVNNSVARVAGLLATAIIPLAAGLGGAQSLSGA
                     TLANGFTRAMFICAGLCAAGSVISLFTMSGRPER"
BASE COUNT          312 a          483 c          474 g          250 t
ORIGIN      
        1 cagtctggaa ccggttgctc gatcccgccg ccattcaggt ggacgaaaac gacgtcgtcc
       61 gcaccaaacc cgagattctc gcttccctcc ggccgctggg cccgggtctc gttggtcatc
      121 tggcgatcga cgacttcaac gttgcgctgc acggaaacgt cgcggtggtc acgcacgagg
      181 acaacgagta tctcgattat catggtcagg tcatccgaag caggttccgg atgaccgaca
      241 cgtgggtcga tggagccagc ggctggcggt tgctgggatc gcaggtgctt gcggtacaga
      301 aggatccgcc ggccatcaag ctcgatcgtg caacgctctg cggttacaac ggccgatatg
      361 agatgacatc cgacatcgcc gccacgatgc aatgtgcggg ggattcactg gtgatgaagc
      421 gcgctggaca cccggaccgg ttctttttgc ccgaagtacg cgacgtcttc ttcgagcccg
      481 gccagccgcg cacgcggcgc atctttcagc gcgatgcgca ggggcggatc actggattcg
      541 tcgatcgccg agaggagcgt gacgtcgcgt ggaagcggcg cggatcctaa cgctccggcc
      601 gaccgctcat cgtaaacaac gatatcacgc tcccggccgc gcacaacccc gcgcagatga
      661 acatcgcgcg cgtgaatccg ttcgccagtg tcgcgccaga caggctctga gcaccgccaa
      721 gccccgcagc cagcggaatt atcgcggtcg cgagcagtcc ggcgacgcgc gcaaccgaat
      781 tgttcacgcc ggacgcgagt cctgctcgtt cgtgtccgag cgaggtcagc gcgacgttgg
      841 tgagcggtgc gacgagtgac gacagcccga ttccgaacac gatcgcggca ggcagcacgg
      901 atgtcagata actcgcgccg ggacgcacca gagcgaacag cagcattccg accgccgcca
      961 caagcgcccc cgcagtcatc ggcagccgcg cgccccgtcg ctcggcgaaa cgcccggcaa
     1021 acggtgagat gaccagcaac agcaaattga tcggcatcag cgatgcgccc gctgcaagcg
     1081 cgctgtagcc gagcacgttc tggagctgga gcatgaggag aaagaagagg cccgtcagcg
     1141 cagcatatat cgcgaacgtg gctgcgttca cgccggtgaa tttcttcgat gcgaaagtat
     1201 ctggtggaag gagcggctct ttcgtgtgcc gctcgacgat gatgaacgca acgagcagca
     1261 cgatgcccgc gacgccgatc gccgccggat acggtgtcgt gaatccgcga tcggatccga
     1321 gcatgagagc gccgaccact gcgccgagtc caagtgtcat gagtgccgca cctgcataat
     1381 cgacagtcgc tgcggatctc gtttcttttg cggatctgcc cgcgacagtc acgacgatgg
     1441 cgccagcgat cgcaaacggt atcatgatca cgaacacgaa tcgccacgac gatgcgtcca
     1501 cgatccatcc gccgagcag
//
LOCUS       DATIMD010000322         2601 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4748644, whole genome shotgun sequence.
ACCESSION   DATIMD010000322 DATIMD010000000
VERSION     DATIMD010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4748644"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1461
                     /locus_tag="VLI40_07245"
     CDS             <1..1461
                     /locus_tag="VLI40_07245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97006.1"
                     /translation="KATAPAAPPAGAFHNTDVWAPFFGYNSSNDVAHFAITATIPARY
                     YLTTTLPQTESVANGVRTVIGRSGDAQFLISAIYDSDWRPQTSNVDGVRFETFTSPDF
                     HFSHDTLAKALRAVDKILGARFGGPVPPYVAVVEDRALGKRGFSVHMGNAVVSGTNPT
                     QLEEFGVRGPTSAYAHEISHGWTMNASGPAANMLREGWASFSEYVVLGAEHGPAVAQA
                     FMERARNGYMLGSEGRLSILGNPDNGGVHYSKGCWIFYMFDKLLGDKAFDRAIREFSH
                     LQSTGQPAGYEELIAAMSRAAGRDLHSFAMPWFTEKVIPDVRAQISGGDVILTQEQAT
                     APFDLPLGVELVTASGKTSRRTVHLASRADTLHVGTGDPVTAVHVDPDRRLLLRRYWG
                     EVVTLELPVAQTTGAKTVALVGDFSLGAVPATRAGDNWVVTLPLSEGRYVWSWQLDGK
                     PRSEGEGGDPGTQGDPSRTGERVVRPIQLLTNPYPK"
     gene            1697..>2601
                     /locus_tag="VLI40_07250"
     CDS             1697..>2601
                     /locus_tag="VLI40_07250"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HSU97007.1"
                     /translation="MQPYSIRRIINRNALAFAALVSSAPLLPAQATRAPNQPIDSAYT
                     AQILALTPKDPRYTSLTDLVDYLPASATVPTPLKVLGYVPGTIGRLSYVADMNRYFRA
                     LAKASPRVKVFSLGLSDEGREMIVVAIADDTTITRLDDYRHALARLGDPRGVSAGEQE
                     KLLGEAKPVYWLSGSIHSPETGSPEMLMELAYRLAVDESPYIRGIRSKVITLITPAME
                     VDGRDRMVDVLKLSYKLKLPIDDVLDISRDVNPGPSGIPLIYWGRYTAHDNNRDAMIQ
                     SQQLTRNFMKGFMYWRPTVVHDLHES"
BASE COUNT          531 a          777 c          787 g          506 t
ORIGIN      
        1 aaggctacgg ctcctgcagc gccgccggca ggcgcatttc acaacacgga tgtctgggcg
       61 ccattcttcg gctataacag cagcaacgac gtagcgcact tcgcgataac ggcaaccatt
      121 ccagcgcgct attatctgac gacgacactg ccgcagaccg aatcggtcgc gaatggcgtc
      181 agaaccgtca ttggacggag cggtgacgcg caattcctca taagcgcgat ctatgacagc
      241 gactggcgtc cgcaaacgag caatgtcgat ggagtgcgtt tcgagacgtt cacttccccc
      301 gatttccatt tctcacacga cacgctcgcg aaggcgttgc gcgcggtcga taaaatactc
      361 ggcgcgagat tcggcggccc ggtcccgccg tatgtagccg tggtcgagga tcgcgctctc
      421 ggaaagcgcg ggttctcggt ccacatgggc aacgcggtag tctccggcac caatccaacg
      481 cagctcgagg agttcggtgt gcgcggcccg acctcggcat acgcacacga aatttcgcac
      541 ggctggacga tgaacgcgtc cggacccgct gccaacatgt tgcgggaagg atgggcgagc
      601 ttctcggagt acgtcgtact cggagcagag catggaccgg ctgtagcgca ggcgttcatg
      661 gagcgcgcgc gcaacggtta catgctcggc tcggaagggc gtctcagcat cctcggcaat
      721 cccgacaacg gcggcgttca ctactccaag ggttgctgga tcttctacat gttcgacaag
      781 ctccttggcg acaaggcgtt cgacagagcg atacgcgagt tctctcacct gcagagcacc
      841 ggacagccgg ccggctacga ggagttgatc gctgcgatgt cccgcgcagc ggggcgcgac
      901 cttcactcgt tcgcaatgcc gtggtttacg gagaaggtga tccctgatgt gagggcgcag
      961 atttccgggg gcgatgtgat cctgacccag gaacaggcga cagccccgtt cgatctaccg
     1021 ctcggggtcg agttggtcac ggcatcggga aagacgtcac gacgtaccgt tcatcttgcg
     1081 agccgagcgg acacgcttca cgttggaacg ggcgacccgg taacggcagt gcacgtggat
     1141 ccggatcgac gtctgctgct gcgtcgatac tggggcgagg tcgtgactct ggaactgccc
     1201 gttgcgcaga ccaccggcgc caaaacagtc gcgcttgtcg gcgacttttc tcttggtgcg
     1261 gttccggcca cgcgcgccgg tgacaactgg gtagtgacgc tgccgctcag cgaaggccgt
     1321 tacgtgtgga gctggcagct cgacggcaag ccgcgctcgg agggcgaggg tggagatccg
     1381 ggcacgcaag gtgatccgag caggaccggc gagcgcgtgg tcaggccgat acaattactg
     1441 acgaatccct atccgaagtg acaggcatgg atgtattcct ttgagtgtca cgcagggatg
     1501 tattcctggc ccaccagtgc attttgagtg acaggcaggg attacatccc tgccccacct
     1561 tcgcctggca tcacttactc ctgcgacgtg acggtgttga atccagttcc ggtccgtgga
     1621 ttcaaggcgc ggatgatggt gtgttgatcg atcaagtttc gttgatatgt taattcgtaa
     1681 caccatgagg ttctgaatgc agccgtattc catccgtcgt atcatcaaca ggaatgcgct
     1741 tgcattcgcc gcgcttgtct cgtctgcccc tctgctacca gcgcaggcga ctcgcgcgcc
     1801 gaatcaaccg atcgacagcg catacactgc acagatcctc gcgctcactc cgaaagatcc
     1861 gcgctacact tcactcacgg atctggtcga ctatctaccc gcgtcggcaa cagtacccac
     1921 accgctcaag gtgctcggct acgtgcccgg aacgatcggg cgactgtcct acgtcgccga
     1981 catgaacaga tacttccgcg cgctcgccaa ggcgtcgccg cgtgtcaagg tgttcagtct
     2041 cgggttgagc gacgaaggtc gtgagatgat cgtggtcgcg atcgcggacg atacaacgat
     2101 caccagactg gatgattatc gccacgcact cgcgcgtctg ggagatccgc gaggcgtttc
     2161 cgcaggagag caggagaaac ttctcggcga agccaagccg gtatactggc tcagcggatc
     2221 gatccattct ccggaaaccg gcagcccgga aatgctcatg gagctcgcct accggcttgc
     2281 ggtggacgag tcgccgtaca tccgtggaat tcgatcgaag gtgataactc tcatcacccc
     2341 cgcaatggaa gtcgacggcc gagaccgaat ggtcgacgtt ctcaagctat cgtacaagct
     2401 caagcttccg atcgatgacg tgctcgacat ctcgcgcgat gtgaatccgg ggccgagcgg
     2461 cattccgttg atctactggg gacgatacac ggcgcacgac aacaaccgcg acgcgatgat
     2521 ccagtcgcag cagctaacgc gaaatttcat gaaggggttc atgtactggc gcccgaccgt
     2581 cgtgcatgac cttcatgaat c
//
LOCUS       DATIMD010000323         4264 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2433055, whole genome shotgun sequence.
ACCESSION   DATIMD010000323 DATIMD010000000
VERSION     DATIMD010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4264
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2433055"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(211..1149)
                     /locus_tag="VLI40_07255"
     CDS             complement(211..1149)
                     /locus_tag="VLI40_07255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97008.1"
                     /translation="MTATDTEAMSALHELLDERQRYQGWLAALEGRRNSTPPHVFERV
                     QRDYTGRLDRVMQTLTERAGQLTGTIESMTSELATLREHESDRTDERHEAELRAAVGE
                     LTPDEWEQRRAEVDSEIERVAAERRSLEEELQELQRIVALTASIEPQATTPEPAAQAT
                     QQPQRDEAAEAAAQREKAEQMLAQASAPSIDDFVAEWHPPQVRPQQGNASRQQHDNVP
                     DTKDLEDLVIPASPMGGNPVGAAGADYGIANGVTRVAAGAGSAPAQTRTPPPVSAQSA
                     DARRDADKTLKCPECGALNYATEWYCERCGGELSTF"
     gene            complement(1164..2450)
                     /locus_tag="VLI40_07260"
     CDS             complement(1164..2450)
                     /locus_tag="VLI40_07260"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HSU97009.1"
                     /translation="MTRTVLLTGGRVLDPSQQMDDVADVLLVEGNITAIGRDIGRPDD
                     AQIVDCTNLIVSPGFIDVHCHLREPGRADVETIASGARAAAAGGFTAVCAMPNTDPVI
                     DNPAAVGFVVRQGLRAGGARVYPIGAISVGQRGEALAEFGEMVDAGAIGVSDDGKPVV
                     SAQLMRTALEYARTFHIPVIDHCEEPTLAAGGAMNEGIVSARLGLKGIPDEAEEIMAI
                     RDILLARLTRGHVHLAHMSTKGSVELIRWGKDRGINVTAEVCPHHLSLTEEAVEGYDT
                     NAKMNPPLRTAEDVETLREAVRDGTIDLVATDHAPHHYDEKEREFQNAPNGIVGLETA
                     LSVVVDSLVVPGHIDFGTLVDRMSCSPARLFGLPGGTLRVGSPADVTVFDPARRWTVD
                     PDLFLSKGRNTPYAGMTLTGRAICTVVAGQVVYTLN"
     gene            complement(2447..3418)
                     /locus_tag="VLI40_07265"
     CDS             complement(2447..3418)
                     /locus_tag="VLI40_07265"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HSU97010.1"
                     /translation="MTAAAPLGKDLLGLEPLSGEQISLILDTAEPFKEISERAIKKVP
                     TLRGSTVVNLFFENSTRTRISFEFAEKRLSADTVNVSSSGSSVSKGETLVDTARNLEA
                     MRIDMVVIRHGSSGAAKFLAGRIESNVINAGDGMHEHPTQGLLDLLTLRDHFKRIDGL
                     RVCICGDVLHSRVARSNIWGLRKLGAEVAVCGPRSLMPNAIDDMGVTVFSRIEEAIEW
                     ADALNILRLQLERMTGGYIPSLREYNRVFGVTRERLERAPRDVLILHPGPMNRGVEID
                     SDVADGPHSVILPQVTNGVAVRMAVLYLLSGGRPELAESAKSGKGVL"
     gene            complement(3415..3963)
                     /gene="pyrR"
                     /locus_tag="VLI40_07270"
     CDS             complement(3415..3963)
                     /gene="pyrR"
                     /locus_tag="VLI40_07270"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HSU97011.1"
                     /translation="MTEHTETILDASAVERTLRRMAGEIVEANGGTENLVIVGIQRRG
                     VQLADRIVALIKASDGVTVPRGALDITLYRDDLQTIGPRPVVGSTSLPGAIDDCNVVI
                     VDDVLFTGRTIRAALDELADFGRPARIELAVLIDRGGRELPIQPDIVGKKVDARAGDR
                     VDVQVEEIDGQSAVVLVSKRFE"
     gene            complement(3989..>4264)
                     /locus_tag="VLI40_07275"
     CDS             complement(3989..>4264)
                     /locus_tag="VLI40_07275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HSU97012.1"
                     /translation="SSGRSNTSMNLFPERVLNRSFPRTFRLGLLDKDVGIAAGIARDT
                     GTPAPLLTETARLFADAHRELGEEADHIEAVKLVERRAGTTIGGRIQ"
BASE COUNT          722 a         1451 c         1271 g          820 t
ORIGIN      
        1 acacatgctc cccaacgtcg gggcccgcgg gcgctgcggt ggtagcaggc gtcttgcgcc
       61 accagcatct tgctacctgg taaaacgctg ttgacatccg cgtttaccgc tgtcgccctc
      121 acaccgatca agaacgagct actgcagttg ccggcgatcg cctacacgtg caaacggttg
      181 cagcgctatc aacccctcgc acatggttgc ctagaacgtc gacagctctc cgccgcagcg
      241 ctcgcagtac cactcggtcg cataattcaa cgcgccgcat tcgggacact tgagagtctt
      301 gtccgcgtcc cttctcgcgt cggcggattg tgccgataca gggggtggtg tgcgcgtctg
      361 ggcaggcgcc gaccccgcgc cagccgcgac tctggtcacg ccgttcgcga tcccataatc
      421 ggcgccggcc gcaccgacag gatttcctcc catcggcgat gcgggtatca cgagatcttc
      481 cagatccttg gtatcgggaa cgttgtcgtg ttgctgacgc gaagcgttgc cctgctgcgg
      541 tcgtacctgc ggcggatgcc actctgctac gaagtcatcg atcgacggtg cagatgcctg
      601 cgccagcatc tgctctgcct tctcacgctg tgctgccgcc tccgcagcct catcgcgttg
      661 cggctgctgc gtcgcttgcg cggccggctc cggcgtcgtc gcttgaggct cgatcgatgc
      721 cgtcagcgcg actatccgct gcagctcctg caactcctct tcgagcgacc ttcgctcggc
      781 ggctacacgc tcgatctcgc tgtcgacttc cgcacggcgc tgctcccact cgtccggcgt
      841 gagttccccg acggccgcgc gcagctccgc ttcgtgccgc tcgtcggtgc gatcggactc
      901 gtgctcgcgc agcgtcgcca gctccgacgt catgctctcg atggtgcccg tcaactgtcc
      961 ggcgcgctcc gtgagcgtct gcatcacacg gtcgagacga ccggtgtagt cgcgctggac
     1021 ccgctcgaac acatgcggcg gagtcgagtt gcgacgacct tcgagtgcgg cgagccagcc
     1081 ctgatagcgc tgcctctcgt ccagcaactc atggagagcc gacatcgctt cggtatcggt
     1141 cgctgtcatt ctgctttcct ctgctagttc agagtgtaga cgacctgccc cgccactacg
     1201 gtgcagatcg cacggccggt cagcgtcata ccagcatacg gtgtgttacg ccctttggac
     1261 aggaacagat cgggatctac cgtccagcga cgagccggat caaaaacggt gacgtcggcc
     1321 ggcgacccga ctcttaaagt acctccgggg agtccgaaca gtcgagccgg actgcaggac
     1381 atccggtcga ccagcgttcc gaaatcgata tggcccggca caaccagact gtccaccacg
     1441 acggacaacg ccgtttccag cccgacgatt ccgttaggtg cgttctggaa ctcgcgctcc
     1501 ttctcatcgt aatggtgcgg cgcgtgatcg gtcgcaacca gatcgatcgt tccatcgcgc
     1561 accgcttcgc gaagcgtctc gacgtcctcc gccgtacgga gcggcggatt catcttggcg
     1621 ttcgtatcgt agccctcgac cgcttcttcc gtgagcgaga gatggtgcgg gcagacttcg
     1681 gcggtgacgt tgatgccgcg atccttgccc cagcgaatca gctcgaccga tcccttggtg
     1741 ctcatgtgcg ccagatgcac gtgtccgcga gtgaggcgcg cgagaagtat gtcgcggatc
     1801 gccatgatct cctcagcctc gtcgggaatc cccttgagtc cgagccgtgc cgatacgatg
     1861 ccctcgttca tcgcgccacc ggccgcgagc gtcggctcct cgcaatgatc gatcaccgga
     1921 atgtggaacg ttcgcgcgta ctcgagcgcg gtgcgcatga gttgcgcgga tacgacgggt
     1981 ttaccatcgt cgctcacgcc gatcgctcct gcatccacca tctcgccgaa ttcagccagc
     2041 gcctcgccgc gttgtccgac ggagatcgca ccgatcgggt acacgcgcgc gccgcccgcg
     2101 cgaagtccct gacgtacgac gaaaccaacc gctgccggat tgtcgatcac cgggtcggtg
     2161 ttgggcatcg cgcacaccgc ggtgaatccg ccagccgctg cagcgcgcgc gccgctcgcg
     2221 atcgtttcga cgtcagcgcg tccaggctcc cgcagatggc agtgcacgtc gatgaagccc
     2281 ggcgacacga tcaggttcgt gcaatccacg atctgcgcgt cgtccggccg gccgatgtcg
     2341 cgtccaatcg ccgtgatgtt cccttcgacg agcagcacgt ctgcgacgtc gtccatctgt
     2401 tgcgacggat cgagcacgcg tccgccggta agcagcacgg tacgcgtcac agtacgccct
     2461 tccccgactt ggccgactcc gccagctcgg gccgaccgcc ggacaggagg taaaggaccg
     2521 ccatccgcac ggcgactccg ttggtcacct gcgggagtat cacgctatgc ggcccgtcgg
     2581 ccacgtcgga atcgatctct acaccgcgat tcatcggtcc cggatgaagg attagcacat
     2641 cgcgtggcgc gcgctccagc cgctcgcgcg tcacgccgaa aacacgattg tattcacgca
     2701 gcgacggtat gtagccgccg gtcattctct caagctgcaa ccggagaatg ttgagagcat
     2761 cggcccactc gatcgcctcc tcgatgcgcg agaacaccgt cacgcccatg tcgtcgatcg
     2821 cattcggcat cagggaccgc gggccgcaca ccgcgacctc ggcgcccagc ttgcgaagac
     2881 cccagatgtt ggagcgcgcg acgcgcgagt gcagcacgtc gccgcagatg cagacacgca
     2941 gaccgtcgat tcgcttgaag tgatcgcgaa gcgtgagcag gtcgagcagc ccctgcgtcg
     3001 gatgctcgtg cataccgtcg ccggcgttga tgacattcga ctcgatgcgg ccagcgagga
     3061 acttcgcggc acccgatgat ccgtgccgga tcaccaccat gtcgatccgc atcgcttcca
     3121 agttgcgcgc ggtatcgacg agcgtctcgc ctttcgacac gctggatccg ctggacgaca
     3181 cgttgaccgt gtcggccgat aaccgcttct cggcgaactc gaacgagatg cgcgtgcgtg
     3241 tcgaattctc gaagaagaga ttcaccaccg tcgagccgcg cagagtcggc accttcttga
     3301 tcgcgcgctc gctgatttcc ttgaacggct ccgcggtgtc gagaatgaga ctgatctgct
     3361 cgccgctcag tggctccagc cccagcaaat cctttccgag cggtgccgct gctgtcattc
     3421 gaatcgcttg gatacgagaa ctacagcgga ttgcccgtcg atctcttcga cctggacgtc
     3481 cacccggtca ccggctcgcg cgtccacttt cttaccgacg atgtcaggct ggatcggtag
     3541 ctcgcgtcca ccgcgatcga tcagaaccgc aagctcgatt cgcgccgggc ggccgaaatc
     3601 ggccagctca tcgagcgcgg cccgaatcgt tcgaccggtg aagaggacgt cgtcgacaat
     3661 gacgacgttg caatcgtcga tcgcgcctgg cagggacgtc gatccaacca ccggcctcgg
     3721 gcctatggtc tgcaggtcgt ccctgtaaag agtgatgtcg agggcgccgc gcgggacggt
     3781 gacgccgtcg cttgccttga tgagtgcaac gatacggtcg gcgagctgaa cgccgcgccg
     3841 ctggattcca acgattacga ggttttcagt tccgccattc gcttcgacta tctcaccggc
     3901 catacggcga agcgttcgct ccaccgcgct tgcatccaga atggtttcag tgtgctctgt
     3961 catccggctc aaatatagcc catgcggact actgaatccg gccgccgatc gtggtccccg
     4021 cgcgccgctc gaccagcttc acggcctcga tgtggtccgc ttcctcgccc agctcgcggt
     4081 gcgcgtcggc gaacaagcgg gcggtttccg tcagaagtgg cgcgggagtc ccggtgtcac
     4141 gtgcgatgcc ggctgcgatc ccgacatcct tgtccagcag ccccagcctg aacgttcgcg
     4201 gaaagctcct gttcagcacc cgctcgggaa agagattcat cgacgtgttg gaccggccgc
     4261 tgga
//
LOCUS       DATIMD010000324         3073 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4749338, whole genome shotgun sequence.
ACCESSION   DATIMD010000324 DATIMD010000000
VERSION     DATIMD010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3073
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4749338"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..788)
                     /locus_tag="VLI40_07280"
     CDS             complement(<1..788)
                     /locus_tag="VLI40_07280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HSU97013.1"
                     /translation="MKRRLRIVLTFATLAATLIGLALLARLGDSVEGPLSATLDLVGT
                     TFASAEHAIRNHVRGAGRHTALAWLEPYRRDPARLRHPDRVFLGAYDNGIPQTLDGIS
                     QLDRTLGTVLPLIQLYSAWGDKPEERFPLHAATAIWDMGSVPVVTWEPWLADFSSAQH
                     PQLPIQRDRDRHGLAAVARGDYDFYLDAWAADAKRFGHPFFVRFGHEMNDAYRYPWGP
                     QNNSKEEYIAAWRHVVERFRNVGATNVIWVWSPHVAYEYWDLYYP"
     gene            complement(785..2413)
                     /locus_tag="VLI40_07285"
     CDS             complement(785..2413)
                     /locus_tag="VLI40_07285"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSU97014.1"
                     /translation="MTTAWRDLWRHRAAPEVRFRDRLAISALAGFGIAAVLRLFDWWF
                     RPAHVGQPLLFALLSLAFWYGVSRIVLGWVNYAAIDKPKHRTAVSGRAVAIFTTSAPG
                     EPLAMFEKTLAACARIRYPHTTYLLDDTRDDRFREVAARHGAVWLELLDVPGAKAGKI
                     NRALATTQEELILVLDPDHIPFPEFLDRVLGHFEDAEVGFVQVSQAYYNQFRSFTAAG
                     AAEQTYAFYGPGQMGLYGHGAAVAIGANCTFRRTALDSIGGHGIGLAEDLITAIRLHA
                     AGWRSVYVPEVLSRGLVPEDLGSFYRQQLKWSRGVYEVVFSEMPKLFRDLRWRQRLSY
                     LTIGTYYLVAVTTPLYLLFPYLFLWTGVQPASMRFAEFLIASAPAAIFGLAMYALVQR
                     WMCDPATERGMHWRGLVLKVACWPVYLVGTVLAVVRAEIPYVATAKVAVRGRFLWLAW
                     PQLCVLALFGATIAHVIRARMLHATEGSLELSSEAVWGMIVFATIPLVSSLGVFWAAW
                     EARTPLGTAPWDAVDINDLGGDIGHDATAASVSS"
     gene            complement(2410..>3073)
                     /locus_tag="VLI40_07290"
     CDS             complement(2410..>3073)
                     /locus_tag="VLI40_07290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97015.1"
                     /translation="FTDASLSTPVMTSTGTVMLDWASARGWLGQAAVQQQRYPDANRT
                     NTAYAWLLAPIVHDSAVHFQIGYAFTSQNALQNRFVLAHPTQPFAPSDPRYDFSGRYV
                     PYYTPLNLIEHSALAAMMLRLGRTVIFRSSGSYGFRATDDATVFAATPGAGNAVTRTT
                     VQRSFSPWSARASLECVASSGMTLGLSGDFMRTAFYTAATLRTQLTYRFGIPARRTAA
                     GY"
BASE COUNT          619 a          978 c          967 g          509 t
ORIGIN      
        1 gggtaataga gatcccagta ctcgtacgcg acgtgaggcg accataccca gatgacgttc
       61 gtcgcgccca cgttgcgaaa acgctcgacc acgtggcgcc acgccgcgat gtattcctcc
      121 ttgctgttgt tctgcggccc ccacggatat cgataggcgt cgttcatctc gtggccgaag
      181 cgtacgaaga acggatgtcc gaaccgcttc gcgtcagccg cccatgcgtc gagataaaaa
      241 tcgtaatcgc cgcgtgcgac cgctgccaat ccatgccggt cgcgatcgcg ctggatcggc
      301 agctgcgggt gctgcgcact cgagaaatcc gcgagccacg gctcccacgt gacgaccggc
      361 accgatccca tatcccaaat cgctgtggcc gcgtgcagcg gaaaccgctc ttcgggcttg
      421 tcaccccacg cgctgtatag ctggatgagc ggcagcacgg tgcccaacgt ccgatcgagt
      481 tgcgaaatgc cgtccagcgt ctgtggaatg ccgttgtcgt aggcgcctag gaatacgcgg
      541 tcgggatgac gcagccgagc gggatcgcgc cggtagggtt cgagccacgc gagcgccgta
      601 tgtcgccccg caccgcgaac gtgattgcgt atcgcatgct ccgcggatgc gaacgtggtt
      661 ccgacgagat ccaacgttgc ggagagtggg ccctcgacgc tgtcgccaag ccgcgccagg
      721 agcgcgagcc cgatcagtgt cgccgcaagc gtcgcaaatg tgaggacgat gcgcagacgg
      781 cgcttcacga gctcacgctc gctgctgtcg catcatgtcc gatgtcaccc ccgagatcgt
      841 tgatgtcgac cgcatcccag ggtgccgtgc ccagcggcgt acgtgcttcc catgcggccc
      901 aaaacacacc gagcgatgag accagcggaa tcgtcgcgaa cacgatcatt ccccacaccg
      961 cctcgctgct cagttcgagc gagccctcgg tggcgtgcag catacgcgcc cggatcacgt
     1021 gcgcgatggt cgctccgaac agtgccagca cgcatagctg cggccatgcg agccacagaa
     1081 aacgtcctcg caccgcaacc ttggcggtcg ctacgtacgg aatctccgcg cgcaccactg
     1141 cgagtacggt gcccacgaga tacacaggcc agcacgccac cttgaggacg agtccacgcc
     1201 agtgcattcc tctctccgta gcaggatcgc acatccatcg ttgcacgagc gcgtacatcg
     1261 ctaaaccgaa aatcgcagcc ggcgcgctcg cgatcaggaa ttccgcgaac cgcatcgacg
     1321 ccggctgaac accggtccac aggaagagat acggaaaaag cagatagagc ggcgtggtca
     1381 cagccaccag atagtaggtc ccgatcgtga gataggagag gcgttgccgc caccgcaagt
     1441 cgcgaaagag cttcggcatc tcggagaaca ccacctcgta tactccgcgt gaccatttga
     1501 gctgctgacg atagaacgag ccgaggtcct cgggcacgag cccgcgactc aggacttccg
     1561 gcacgtacac tgaccgccaa cccgcggcgt gcaggcggat cgcggtgatg agatcttcgg
     1621 cgaggccgat tccatggccg ccgatggagt ccagtgcggt tctgcggaac gtgcagttcg
     1681 cgccgatggc cactgcggca ccatgcccgt acagccccat ttgtcccggc ccgtagaacg
     1741 cgtatgtctg ttccgctgcg ccagccgccg tgaacgagcg gaactgattg tagtacgcct
     1801 gcgagacttg aacgaatcct acttcagcat cctcgaaatg accgagcacg cgatcgagga
     1861 attccggaaa gggaatgtgg tcggggtcga ggacgagaat cagctcctcc tgagtcgtcg
     1921 cgagtgcgcg attgatcttg ccggcttttg ctcccggaac atcaagcagc tcgagccaca
     1981 cggccccatg tcgcgcggcc acctcgcgga accggtcatc gcgcgtgtcg tcgagcaagt
     2041 acgtggtatg cggatagcga atacgcgcgc acgctgcgag agttttctcg aacatcgcga
     2101 gcggctcacc cggtgcgctc gtggtgaaga ttgcaaccgc ccggccagat accgcggtgc
     2161 ggtgtttcgg cttgtcgatc gccgcatagt tcacccagcc gagcacgatg cggctgacgc
     2221 cataccagaa ggcgagcgac agcaacgcga agagcagcgg ctggccgacg tgcgccgggc
     2281 gaaaccacca gtcgaagagt cgcagcaccg cggcgatgcc gaaaccggcg agcgcgctga
     2341 tggctagccg atcgcgaaag cgcacctcag gtgccgcgcg atggcgccag agatcgcgcc
     2401 atgcagtggt caatagccgg ctgccgtccg ccgcgcggga atgccgaacc gataggtgag
     2461 ctgcgtgcga agcgtagccg cggtatagaa tgcggtacgc atgaagtcac ccgacagccc
     2521 caacgtcatg ccactcgagg caacgcattc cagggatgcg cgcgcgctcc acggagagaa
     2581 gcttcgttga accgtcgttc gcgtcacagc gttccccgcc ccgggagtcg ccgcgaatac
     2641 ggtcgcgtca tcggtggcac gaaagccgta cgacccactg cttctgaaga tcactgtgcg
     2701 ccccagacga agcatcatcg cggccagtgc ggaatgctcg atgagattga gcggcgtgta
     2761 gtagggtacg tagcgaccac tgaagtcgta tctcgggtcg ctcggcgcga acggctgcgt
     2821 gggatgcgcc aatacgaacc gattttgcaa ggcattctga gaggtgaagg cgtagccgat
     2881 ctgaaagtgc acggcggagt cgtgaacgat cggtgcgagg agccacgcgt aagcggtgtt
     2941 tgtcctgttc gcatccggat agcgctgctg ctgcaccgct gcctgtccga gccagccgcg
     3001 ggcgctcgcc cagtcgagca tcacggtgcc ggtggaggtc atcactggcg tggagagact
     3061 cgcgtcggtg aag
//
LOCUS       DATIMD010000325         5057 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5612949, whole genome shotgun sequence.
ACCESSION   DATIMD010000325 DATIMD010000000
VERSION     DATIMD010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5057
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5612949"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1115)
                     /locus_tag="VLI40_07295"
     CDS             complement(<1..1115)
                     /locus_tag="VLI40_07295"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR01085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008765 -
                     UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HSU97016.1"
                     /translation="MTGATNDPMVAAKRIEIARAAAARYGYPALSLRAIAVTGTNGKT
                     TTVNILRALLDLPVAPAASIGTLGVLVGAEGRLVPGGLGLTTPGPDELQRVLRELVDM
                     GVRSLAMEVSSHALDQARVYGMSFDAAVFTNITRDHLDYHGTMEEYFRAKAKLVSYLK
                     TTGVAVVNADQPEWASLPPAPRLVTYGLAAGDVRAEDVAFDATGSTWTLRMGDESAPV
                     RLPLVGDFNVVNALAAACAALSLGIPLRALAHSLREIPQVPGRLELIADHPPVLRDYA
                     HTPDALVRALAALRPFVTGKLILVFGAGGDRDPGKRPIMGAAAEAGADRVIVTSDNPR
                     TEDPDAIIDDIERGMSLPHERITDRRKAIARAIDIAES"
     gene            complement(1112..3175)
                     /locus_tag="VLI40_07300"
     CDS             complement(1112..3175)
                     /locus_tag="VLI40_07300"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HSU97017.1"
                     /translation="MSMALKTPGRLTIVHSVLVIFALALIAKAGYEQLFRHGYWNRIG
                     QRQHYVSSGLPAPRGQILDATGRPLVESREMVRISVAPRQVRNRAALARDLKLASVDP
                     RFVSMSLDTARKWVDVPGAFLPNAVAPAIALRGVYSKPVMDRVYATSGGIRRIVGRVG
                     PDGKALDGIELALDSLLRGDTATVRVARDKSGRPLAAPDDADDPTPGSTVVLTINREL
                     QEICDRELAVAVDSLHADGGDIVVMNPNTGDVLAMASNRTDPAAVANTAVTEPYEPGS
                     TMKPFVAARLLLLGRATPDQTVDTHNGRLIIPGRGRPITDADEHPSVLSLTDVIKHSS
                     NVGIVLFAQRLSVREKFEMLRDMGFGTQTAVALPAESSGLVRDPTGWTPQSAASVVMG
                     YEVSVTPLQMVTAYSAIANGGELLMPHIVKEIRAADGTVRYAAQRKVVRRVMTPEVAT
                     EVRTMLRDVVAGGTSTKADLATLDVAGKSGTAIRNAHGHYIAGSYTASFVGLFPDDKP
                     QFVILVKLDNPQMGFYGGIVAGGVTNVVLRAALAARDAALDRGELASSVHAPRPDTTP
                     AGRAAARARMASEKKIDSVDVADSLRELAHAAPVDSDPRTSESYIVTLPSRTRAIPPV
                     VSPHAVPDVAGLPLRSAVRALHAAGFRVELMPGAAVPLMPVAGTMLEPGRVVKLGIAQ
                     SGIAH"
     gene            complement(3172..3495)
                     /locus_tag="VLI40_07305"
     CDS             complement(3172..3495)
                     /locus_tag="VLI40_07305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97018.1"
                     /translation="MSRGDDTTRGKPAAKRRARKRRGRSIMAALLIGFVVVASAVIWR
                     RSYGITQARHMADLDRRIVQLEAERGRLSALIRDESSRTELGPIVLRLGMRIPDDRQV
                     RSIQR"
     gene            complement(3492..4433)
                     /gene="rsmH"
                     /locus_tag="VLI40_07310"
     CDS             complement(3492..4433)
                     /gene="rsmH"
                     /locus_tag="VLI40_07310"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: protein motif:HMM:TIGR00006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HSU97019.1"
                     /translation="MSPIAERSFESGYHDPVMVAEVLGALGGAESVLDCTLGGGGHSL
                     ALLEAGARVTGIDRDADAIAAATARLKGFAEAGRFRPVQGDFTRIDEIPALQSESFNG
                     ILADLGVSSSQIDRDERGFSFRQGVALDMRMSATGMSAADLLNTATTEELTGIFREYG
                     DEPRARRLASEIVRRRSTRDFVIADDLVGAIRGAFGASAGPGDFARLFQAVRIAVNDE
                     LKGLERVLPVLRDMLTPGGTLTIIAYHSGEDRLVKHAMRAWSTACTCPPRQPICTCGG
                     VALGTLITRKSITASTAEIARNPRARSAHLRSWRKAA"
     gene            complement(4551..>5057)
                     /locus_tag="VLI40_07315"
     CDS             complement(4551..>5057)
                     /locus_tag="VLI40_07315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97020.1"
                     /translation="RAVSANPNNPQALLLLADSYAQANQEDSVAVILQRAAAAPGADK
                     STIAQYALGQGNEMYKKGNASKDRAQLQAAIKMLQLSDSIQPSVDAKFLAGVSAFTVA
                     QSAYNEANTAKSCPLAQTARENLGIAQTGLQAGATDDKYKSAASQFLPVIAKFLPAAD
                     AQVKLFCK"
BASE COUNT          920 a         1621 c         1603 g          913 t
ORIGIN      
        1 gattcagcga tgtcgatcgc gcgcgcgata gccttgcgcc gatccgtgat acgttcgtgt
       61 ggaagcgaca ttccgcgctc gatgtcatcg atgatggcgt caggatcttc ggtgcgcgga
      121 ttgtcgctcg tgacgatgac cctgtctgcg ccagcctccg cggctgctcc cattatcgga
      181 cgtttgccgg gatcgcggtc gccgccagcg ccaaatacga ggatcaattt accggtgacg
      241 aacggacgca gcgcagcaag cgcgcgcacc agagcatccg gcgtatgagc gtagtcacgc
      301 agcaccggcg ggtggtccgc gatcagctcc agccgtccgg gaacctgggg aatctctcgc
      361 agcgagtgcg ccagcgcgcg cagcgggatt ccgagtgaca gcgcagcgca cgccgccgcg
      421 agcgcattga cgacgttgaa gtcgccgacc agtggcagcc ggaccggcgc ggattcgtcg
      481 cccattctca gtgtccaggt gcttcctgtc gcatcgaacg ccacgtcctc tgcacgcaca
      541 tcgccggcgg caaggccata tgtcacgagc cgcggcgcgg gcggaagcga tgcccactcc
      601 ggttggtcag cgttcaccac cgcgacgccg gtcgtcttca aataggagac gagcttcgcc
      661 ttggcacgaa agtattcttc catagtgccg tggtaatcga ggtgatcccg cgtgatgttc
      721 gtgaacacag ccgcatcgaa gctcattcca tacacgcgag cctgatccag cgcgtgcgaa
      781 gaaacttcca tcgcgagtga acgaacgccc atgtcgacca gctctcgcaa aacacgctgg
      841 agctcgtcgg gcccgggcgt cgtgagaccg aggccgcccg gcacgagcct gccctcggcg
      901 cctacgagca cgccaagagt tccaatggat gcagccggcg cgacgggaag atcgagcaac
      961 gcacgcagaa tgttgaccgt cgtcgtcttg ccgttggtcc cggttacagc gatcgcgcgg
     1021 agtgacagcg ccggataacc gtaacgcgca gcggccgcgc gcgcgatctc gatgcgcttc
     1081 gcagcgacca tcgggtcgtt cgtcgcgccg gtcaatgtgc gatacccgat tgtgcaatac
     1141 ccaacttcac gactctgcct ggctcgagca tggttccggc gaccggcatc aaaggcactg
     1201 cggcgcccgg catcagctcc acgcggaaac ccgcagcgtg cagcgcgcga acggcggatc
     1261 gaagcggcag gcccgcgaca tcaggcaccg cgtgtggcga taccaccggc ggaatcgcac
     1321 gagtcctgga cggcagagtc acgatatatg actcgctcgt gcgcgggtct gaatcgaccg
     1381 gagccgcatg tgcaagctcg cgtagtgaat ccgcgacgtc gacgctgtcg atcttctttt
     1441 cgctggccat ccgggcgcgc gccgctgcac gtccggccgg cgttgtatcc gggcgcggtg
     1501 catgaacgga tgatgcaagc tcaccgcgat cgagcgccgc gtcacgcgcc gcgagtgcgg
     1561 ctcgcaatac cacgttggtc actcctccag ccacgattcc tccgtagaat cccatctgag
     1621 gattgtccag cttgacgaga atcacgaatt gcggcttgtc atccggaaag agcccgacga
     1681 acgacgcggt gtacgatccc gcgatgtagt gcccgtgcgc atttcgaatt gcggtgccgc
     1741 tctttccggc tacgtcgagc gtcgcgagat ctgctttcgt cgaagttccg ccggcgacca
     1801 catctcgcag catcgtacgc acctcggtcg ctacctccgg agtcatcacg cgtcgtacga
     1861 ccttacgttg ggctgcatag cggacggtgc cgtcggccgc acgaatctcc ttcactatgt
     1921 gcggcatgag cagctcgccg ccatttgcga tcgcgctgta tgcggtgacc atctgcagcg
     1981 gagtgactga tacttcgtaa cccatgacga ccgacgccgc agactgcggc gtccatccgg
     2041 taggatcgcg cacgaggccg gaggactcgg ccggcagtgc gaccgctgtc tgggttccga
     2101 atcccatgtc gcgcaacatc tcgaacttct cgcgcaccga gagccgctgc gcgaagagca
     2161 cgatcccgac gttgcttgag tgtttgatca cgtctgtcag cgacagaacc gatggatgct
     2221 catccgcatc cgtaatcggg cgcccacggc cgggtatgat gagacgtccg ttgtgggtat
     2281 ccaccgtctg atcgggagtt gccctgccga gcagcagcaa gcgcgcggcg acgaacggct
     2341 tcatagtcga tcccggctcg taaggctcgg tgacagctgt gttcgcaacc gcggcaggat
     2401 ccgtcctgtt actcgccatc gcgagaacgt cgccggtgtt tggattcatc acgacgatgt
     2461 cgccaccgtc ggcgtgcaga ctgtcgaccg cgacagcaag ctcgcgatcg cagatctcct
     2521 gaagctcacg gttgattgtg agaacaacgg tgcttcccgg cgtcggatcg tccgcgtcgt
     2581 ctggtgcggc gagcgggcga ccgctcttgt cacgcgcgac gcgcacggtt gcggtatcgc
     2641 cccgcaacag cgaatcgagc gccagctcga taccatcgag cgccttcccg tccggcccca
     2701 cccggccgac gatccgccgg ataccaccgg acgtggcgta gacgcgatcc atcaccggtt
     2761 tggagtacac accgcgcagc gcaatggctg gcgcaacggc gttgggaaga aatgcgccgg
     2821 gaacgtccac ccacttgcgc gccgtatcga gcgacattga aacgaaacga gggtcgacgc
     2881 tcgcaagctt gaggtcgcgg gcgagcgctg cgcgattgcg cacctgacgc ggtgcgacgc
     2941 tgatgcgcac catctccctg ctctccacca gcggccgccc ggttgcatcg aggatctgcc
     3001 cgcgaggggc tggcagtccg gacgatacgt agtgctggcg ctggccgatc ctgttccagt
     3061 agccatgacg aaacagctgc tcgtaacccg ccttcgcgat cagagcgagt gcaaatatga
     3121 cgagtacgct gtgtactatc gtaaggcgac ccggggtctt gagagccatg ctcatcgctg
     3181 aatcgaccgg acctgacggt catcggggat acgcatgccc agtcgcagca caatcgggcc
     3241 aagctcggtg cggctggatt cgtcgcgaat gagtgcggag aggcgaccac gctcggcttc
     3301 cagctgcact atgcggcggt cgagatccgc catgtgccga gcctgtgtta tgccgtagct
     3361 gcgtcgccag atcacagcgc tagcgacgac cacgaagccg atgagtaacg cggccatgat
     3421 cgaccgtccg cgccgcttgc gcgcacgacg ctttgcagct ggctttccgc gcgtcgtatc
     3481 atcgcccctg ctcacgctgc ctttcgccac gatctgagat gggcgctgcg cgcacgcggg
     3541 ttgcgtgcga tctccgcggt gctggcggtg atggatttgc gagtgatcaa cgtgccgagg
     3601 gcaacgccgc cgcacgtgca gatgggctgg cgcggcgggc aggtacaggc ggtgctccac
     3661 gcgcgcatcg cgtgcttcac cagcctgtcc tcgcccgagt ggtacgcgat gatggtcaga
     3721 gtgccgccgg gtgtgagcat gtcgcgcaat accggcagca cgcgttcgag tcccttcagc
     3781 tcgtcgttca ctgcgatccg caccgcctga aagaggcgtg cgaagtcgcc aggaccggcg
     3841 gacgcgccaa atgcaccgcg aatggcgccg accaggtcat ccgcaatcac gaaatcacgt
     3901 gtggagcgcc gacggacgat ttcacttgcc agccgtcgcg cgcgcggctc atcaccgtat
     3961 tcgcgaaata ttccggtgag ctcctcagtg gtcgccgtat tgagcagatc agcggcggac
     4021 atcccggtcg ccgacatcct catgtccagc gcgacgccct gccggaacga gaaaccgcgt
     4081 tcgtcccgat cgatctgcga cgatgaaacg ccgagatcgg cgagaatgcc gttgaaggat
     4141 tcgctctgca gtgcgggtat ctcgtcgatg cgcgtgaaat cgccctgaac cggacgaaag
     4201 cggccggcct ccgcgaagcc cttgagtctc gccgttgcag ccgcgatcgc gtcggcatcg
     4261 cggtcgattc cggtgacccg ggcgccggcc tcgagcagtg cgagcgagtg tcctccaccg
     4321 cccagtgtac agtcgagtac ggattccgcg cccccaagcg cgccaagcac ttcggcgacc
     4381 atgacggggt catgataacc actttcgaac gaccgttcag ctattggtga cacgattgtt
     4441 ttttgcaaga tacggcgacg gcgggggagg cagccaatat acaaaaaacc gccccggcgc
     4501 gaaccggggc ggtttgtgca aactaacggg cggtgagtgc cctggcggag ctatttgcag
     4561 aacaacttga cctgcgcatc agcggcagga aggaacttgg cgatgaccgg gaggaactgg
     4621 ctcgcagccg acttgtactt gtcgtccgtc gcgccggcct ggaggccggt ctgggcaatg
     4681 cccaggttct cgcgagcggt ttgagccagc ggacagctct tggcggtgtt ggcttcgttg
     4741 tacgcgctct gtgcaacggt gaaggccgac acaccagcca ggaacttggc atcgaccgac
     4801 ggctggatgc tatcggatag ctgcagcatc ttgatcgcgg cctggagctg cgcgcgatcc
     4861 ttggacgcgt tgcctttctt gtacatctcg ttaccctggc cgagcgcata ctgggcaatt
     4921 gtgctcttgt cggcgcctgg cgccgcagca gcacgctgga gaatgaccgc gacgctatcc
     4981 tcctgattgg cttgcgcgta gctgtcggcg agcagcagca acgcctgagg attgttcgga
     5041 ttcgcactga ctgcacg
//
LOCUS       DATIMD010000326         2840 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_706318, whole genome shotgun sequence.
ACCESSION   DATIMD010000326 DATIMD010000000
VERSION     DATIMD010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2840
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_706318"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2212
                     /locus_tag="VLI40_07320"
     CDS             <1..2212
                     /locus_tag="VLI40_07320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HSU97021.1"
                     /translation="MAEARELNHSYVGTEHLLLGLLREEKGIAAQVLTDAGINLDEAR
                     KETLRLLGTELPQGAGAAATAGAPATPPVAKGEKKSKTPALDHFCRDLTQLAAEGQLD
                     PTIGRAKEIERVMEILTRRKKNNPVLIGEPGVGKTAIVEGLAQLIATGECPDSLRDNR
                     VLSLDMAAVIAGTKYRGQFEERLKAVMNEIAQNKNVILFIDELHTLVGAGAAEGAIDA
                     SNMLKPALARGELQCVGASTLNEYRKYIEKDGALERRFQTVVVEPPSVDDTVEILKGL
                     RIKYEDHHKVTIPDLTLVAAAKMSERYITDRFLPDKAIDVIDEAGARARLATQAPPPE
                     VTALKHDLEEVNAEKETAVRDQNFERAASLRDKERDLQAQIKHAQEDWDKRRQSHRPV
                     LGEDDISFIVSRWTGIPVRRLQEAETSRLLRMEDELHASVIGQDEAIRALSRSIRRSR
                     AGLKDPSRPIGSFIFSGPTGVGKTELARSLAKFLFADASALIRVDMSEYMEKFSVSRL
                     IGAPPGYVGYEDSGTLTKAVRRKPYSVILLDEIEKAHPDVFNILLQVLDEGHLTDNYG
                     RVIDFKNTVVIMTSNVGAKDITKGGTLGFNTGESRDSFERIVQRVKEEMSHTFNPEFL
                     NRLDDVIVFHPLSRAHIRSIVDIVLRDVQKRLADEELVLRLTEPAADFLVKHGYDDKF
                     GARPLKRAIQRYIEDPLSEKILMAEFAKGDEIEVDIAPEGEKLEFRVMTKASAA"
     gene            complement(2307..>2840)
                     /locus_tag="VLI40_07325"
     CDS             complement(2307..>2840)
                     /locus_tag="VLI40_07325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: GeneMarkS-2+.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HSU97022.1"
                     /translation="IVKLLVATAIVAAPFGVTSAQSGTPPDSSSHTHAWIAGGGAAAG
                     AGLFLAFTHSGNHAPANDFSFHAPQTPPPAQATPTGGTTPPGHTDPAPTPPDTGTVTP
                     PDTGTVTPPDTGETSPVVNEDKPPTYGPLMTTDDTPPPNEQTFDPGASTVPEPGSAAL
                     LMTGIIGLAPLLHKRRK"
BASE COUNT          564 a          829 c          940 g          507 t
ORIGIN      
        1 aatggctgaa gctcgtgagc tcaatcactc atatgtcggt acggaacatc ttctgctcgg
       61 cctgttgcgc gaggagaagg gaattgccgc acaggtactg accgacgcag gcatcaatct
      121 cgacgaagcg cgcaaggaaa cgttgcgtct gctgggcacc gagctcccgc agggcgcggg
      181 tgccgctgct accgctggtg cacctgccac gccgccagtc gccaagggcg agaagaagtc
      241 caagactccg gcgctggatc atttctgccg tgacctcacg cagctcgctg ccgaaggcca
      301 gctggatccg acgattggac gcgcaaagga aatcgagcgc gtcatggaaa tcctcacgcg
      361 ccgcaagaag aacaatcctg ttctgatcgg cgagccgggt gtcggcaaga ccgcgatcgt
      421 cgaaggactc gcgcaactca tcgcgaccgg tgagtgcccc gattccttgc gtgacaatcg
      481 cgtcctgtcg ctcgacatgg cagcggtgat cgcgggaaca aagtatcgcg gccagttcga
      541 ggagcgtctc aaggcggtaa tgaacgagat cgctcagaac aagaacgtca tcctgttcat
      601 cgatgagctt cacacgctcg tcggcgcagg agccgctgaa ggtgccatcg atgcgagcaa
      661 catgctcaag ccggcgctcg cgcgcggcga gctgcagtgc gtcggtgcat cgactctcaa
      721 cgagtaccgc aagtacatcg agaaggacgg cgcgctcgag cggcgcttcc agaccgtagt
      781 cgtcgagcca ccttctgttg atgacacggt cgagatactg aaaggactgc gcatcaagta
      841 cgaggatcac cacaaggtta cgatccccga tctcacgctg gtcgcggccg cgaagatgtc
      901 ggagcgctac atcaccgaca gatttcttcc cgacaaggcg atcgacgtga tcgacgaggc
      961 tggcgcacgc gcacgccttg cgacgcaggc tccgccgcct gaagtcacgg cgctcaagca
     1021 cgacctcgaa gaggtcaacg ccgagaagga aacggcggtg cgcgatcaga acttcgagcg
     1081 tgcagcgtcg ctgcgtgaca aggagcgcga cctgcaggcg cagatcaagc acgcgcagga
     1141 agattgggac aagcgccggc agtcgcatcg gccggtgctc ggcgaagatg atatctcctt
     1201 catcgtgagt cgctggacgg gtattcccgt tcgccggctg caggaagccg agacgtcacg
     1261 tctgctgcgg atggaggacg agctgcatgc atccgtcatc gggcaggatg aggcgatcag
     1321 ggcgctttcg cgctcgatcc gtcgcagccg tgcggggctc aaggatccct cgcgtccgat
     1381 cggatcgttc atattctcgg gaccgacggg agttggaaag accgagctcg cacgctcgct
     1441 tgccaagttc ctgttcgcgg acgcgagcgc gttgattcgt gtcgacatga gcgagtacat
     1501 ggagaagttc tccgtgtcgc ggttgatcgg tgcgcctcca ggctatgttg gctacgagga
     1561 ttcgggcacg ctcacgaagg ccgtgcggcg caagccgtac agcgtcatcc tgctcgacga
     1621 aatcgagaag gcgcatccgg atgtgttcaa catcctgctg caggtgctcg atgaaggaca
     1681 cctgaccgac aactacggcc gcgtcattga tttcaagaac acggtggtca tcatgacgtc
     1741 gaacgtcggc gccaaggaca tcaccaaggg cgggacgctg ggcttcaaca ctggcgaatc
     1801 gcgcgactcg ttcgagcgca tcgtacagcg tgtgaaggaa gagatgtcgc acacgttcaa
     1861 tccggagttc ctgaaccggc tggacgacgt gattgtgttc cacccgctgt cacgtgcaca
     1921 tatccgctcg atcgtcgaca tcgtactgcg cgacgtgcag aagcggctcg ccgacgagga
     1981 gctggtcctg cggctcaccg agccggcggc agacttcctc gtgaagcacg ggtacgatga
     2041 caagttcggt gcgcgtccac tcaagcgtgc aatccagcgc tacatcgagg atccgctctc
     2101 cgagaagatt ctgatggcgg agtttgccaa gggtgacgag atcgaagtcg acatcgcgcc
     2161 cgagggcgag aagctcgagt tccgggtgat gaccaaggcg agcgctgcct aggcaagctc
     2221 aggcgggttc agaaagcaaa aacgggtacg gcttggagcc gtacccgttt tttgcatccc
     2281 atcccaggaa ctgattacac gatcagctac ttgcggcgct tgtggagcag aggcgccagc
     2341 ccgatgatgc cggtcatgag gagtgcggct gaacccggct cgggcaccgt gctggcgcca
     2401 ggatcgaacg tttgctcgtt cggtggcggc gtatcgtcag tggtcatgag cggcccgtat
     2461 gtgggcggct tgtcttcatt cacgactggt gacgtctcgc cggtatccgg aggtgtcacc
     2521 gtgccggtat ccggaggtgt caccgtgcct gtgtctgggg gcgtcggcgc gggatcggtg
     2581 tggcctggcg gcgttgtacc gccggtcgga gtcgcctgcg cgggcggcgg tgtttgcggc
     2641 gcgtggaagc tgaagtcgtt ggccggcgcg tggtttccgg agtgcgtgaa ggccaggaag
     2701 aggcccgcac cggcagccgc gccaccaccg gcaatccatg cgtgcgtgtg gctgctgcta
     2761 tccgggggcg tgcccgactg agcagaggtg acgccgaacg gggcagcgac aatcgccgtg
     2821 gcgaccagga gctttacgat
//
LOCUS       DATIMD010000327         3431 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5327802, whole genome shotgun sequence.
ACCESSION   DATIMD010000327 DATIMD010000000
VERSION     DATIMD010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3431
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5327802"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1089
                     /gene="radA"
                     /locus_tag="VLI40_07330"
     CDS             <1..1089
                     /gene="radA"
                     /locus_tag="VLI40_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HSU97023.1"
                     /translation="LIGGEPGIGKSTLLLQVAATLQGREHEVLYVSGEESPLQVKLRA
                     DRLGDSAQNVALLSETNLETILATASAQAPAVMIVDSIQTVFTSDLEGAPGNVGQVRE
                     SAARLMHFAKASGTSVFLVGHVTKGGGIAGPKTLEHIVDTVLYFEGEGTLDHRVLRAT
                     KNRFGSVDEIGVFRMHENGLEPVANPSELFLSDRHDIASGSAVTTLLEGSRPILIEVQ
                     ALAAKAGYGTPQRVSTGYDGRKLALLLAVLDKRAGLSFSSLDVFINVVGGVQLREPAG
                     DLAVAAALASSVYDRALPSDAVFIGEVGLGGEIRPVAQTERRLAEAAKMGMRNAFVAQ
                     RSASGRVPKDVKAIGVATIAEMFKRLFS"
     gene            1086..1784
                     /gene="ispD"
                     /locus_tag="VLI40_07335"
     CDS             1086..1784
                     /gene="ispD"
                     /locus_tag="VLI40_07335"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: protein motif:HMM:NF013308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HSU97024.1"
                     /translation="MTETVQDVGVVIVAGGTGTRTGSNELKQFRWVAGKPMLLHSVQL
                     FQQRADVCMVVAVLPKQYAGDPPPWIFQSDLSRLLIGVGGNQRGTSVRSGLDDLPAEA
                     RIVVIHDAARPLVLDSTIDAVIAAARNGTGAVAALPEVDTLKRVDENGRITETVERSG
                     LWRAQTPQAFPREMIDDVTRRANREGISGTDDAALCEHYGYPVVVVPGSERAMKVTTE
                     ADFARAEALSMLTE"
     gene            1781..2452
                     /locus_tag="VLI40_07340"
     CDS             1781..2452
                     /locus_tag="VLI40_07340"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:NF013468.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HSU97025.1"
                     /translation="MKAPPRAIPFWSPEEVEASLHDTIAHLNQRRVLAYPTETVYGFG
                     GGADHESVRNLVALKSRPRGKPFLLLVAGVDMLSRLDLHMTHAASSLAARFWPGPLTL
                     VLPGGDKRVPPELRGPEGGVAVRWTSHVALGRLIRAYGDPITSTSANRPGTPPADSAA
                     TILRDWWEAIARDQLRVLDGGTLRPSEPSTVVDCMGARPRVIRPGAIPSETLRMAAPT
                     LVPIA"
     gene            2449..2916
                     /locus_tag="VLI40_07345"
     CDS             2449..2916
                     /locus_tag="VLI40_07345"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97026.1"
                     /translation="MNVIFVCTGNTCRSPLAEALARRAALARGIDATFASAGTGAALG
                     SPATDGAILVGLERDVDLSRHRSRPLLPGAVTSDTIILAMASSHLAGIRAVVPNARVY
                     LLDEYGSHGKSMRHVADPYGGSLDDYRIAADAIEMMLDPVLDRLLSEHTSGTA"
     gene            2913..>3431
                     /locus_tag="VLI40_07350"
     CDS             2913..>3431
                     /locus_tag="VLI40_07350"
                     /inference="COORDINATES: protein motif:HMM:NF020090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97027.1"
                     /translation="MTLPARLVLLGHPVAHSLSPRIHNAALRAAAIPLEYTALDVLPA
                     QLRATLRTLRAEGAAGNVTIPHKQAVFDACDHLTSVAKRAGAVNTFWVQDGELIGDNT
                     DVAGFDFAARELMQSARADMPRRVTLIGAGGAAAAVATTISDWDDAELVVWSRELKRA
                     EALAQRFAFARAE"
BASE COUNT          621 a         1072 c         1139 g          599 t
ORIGIN      
        1 ctcatcggcg gcgagcctgg tattggaaag tcgacactgc tgctccaggt tgccgcgaca
       61 cttcagggac gcgagcacga ggtgctgtat gtgtcaggag aagaatcccc gctgcaggtg
      121 aagctgcgtg cagacaggct cggcgattcc gcgcagaacg tcgcgttgtt gagcgagacc
      181 aatctcgaaa cgattctcgc gaccgcgtcg gcacaggcgc ccgcggtaat gatcgtcgat
      241 tcgatccaga ccgtattcac atccgatctg gaaggcgcgc ccggcaacgt cggacaggtt
      301 cgcgaatcgg ctgcgcgact catgcacttc gccaaggcgt cggggacgag cgtgttcctc
      361 gtcgggcacg tcaccaaggg cggcggcatc gcagggccca agacgctgga gcacatcgtc
      421 gacacggtgc tctatttcga aggcgagggc acactggatc accgtgtgct gcgcgccact
      481 aaaaatcgtt tcggcagcgt ggacgagatc ggcgtgttcc gcatgcacga gaatgggctc
      541 gagccggtcg cgaatccgtc cgagctgttc ctgagcgaca gacacgacat cgcgtcggga
      601 agcgccgtga cgacgctgct cgaaggatct cgcccgatcc tgatcgaagt gcaggcgctc
      661 gcggcaaagg cgggttacgg aacgccgcag cgcgtgagca ctggatacga cggacgcaag
      721 ctcgcgttgc tgctcgcggt tctggacaag cgcgccggac tgtcgttctc atcgctcgac
      781 gtgttcatca acgtcgtcgg tggagtgcag ctgcgcgagc ccgcgggtga tctcgcggtt
      841 gcagccgcgc tggcatcgag cgtgtacgat cgtgcacttc catcggatgc ggtgttcatc
      901 ggcgaagtgg gacttggcgg cgagatccgt cccgtcgcgc agaccgagcg tcgtctcgct
      961 gaagcggcga agatgggaat gcggaacgca ttcgttgcac agcgctcggc gagcggccgc
     1021 gttccgaagg atgtgaaggc gatcggcgtc gcgacgatcg ccgagatgtt caagcgactg
     1081 ttttcatgac ggaaacggtg caggatgtcg gcgtcgtcat cgtcgccggc gggaccggaa
     1141 cacgcaccgg ctccaacgag ctgaagcaat ttcgttgggt cgccggaaag ccgatgctgc
     1201 tgcacagcgt gcaactgttc cagcaacgtg cggatgtgtg catggtggtt gcggtacttc
     1261 caaaacagta cgccggcgat ccgccgccat ggatctttca gagcgacctg agtcgcttgc
     1321 tcatcggagt cggaggcaat cagcgcggca cctcggtacg gagcggactg gatgaccttc
     1381 cggcggaggc gcgtatcgtc gtcatccacg acgcggcacg tccactggtc ctggactcga
     1441 caatcgatgc tgtcatcgcc gcagcacgga acggaaccgg cgccgtcgcg gcgcttcccg
     1501 aggtggatac gctcaagcgc gtggatgaga acgggaggat aacggagacc gtcgagcgca
     1561 gcggactctg gcgcgcgcag acaccgcagg cgtttccgcg cgaaatgatc gacgacgtga
     1621 cgcggcgcgc aaatcgtgag ggaatttccg gcaccgatga tgcggcgctg tgcgagcact
     1681 atggatatcc ggtcgtcgtg gttcccggaa gcgagcgagc gatgaaggtc actaccgaag
     1741 cagattttgc acgcgcggaa gcgctcagca tgctcaccga atgaaggcgc caccgcgcgc
     1801 gataccgttc tggtcgccgg aagaagtcga ggcgtcgctg cacgatacga tcgcgcatct
     1861 gaatcagcgg cgcgtgctcg cgtatcccac cgaaaccgtg tatgggttcg gtggcggagc
     1921 ggatcatgag tccgtacgca atctcgtcgc gctcaaatca cgcccgcgcg gcaaaccgtt
     1981 tctgctcctc gtcgccggtg tcgacatgct gtcgcgcctg gatctgcaca tgacgcatgc
     2041 agcgtcatcg ctggccgcac ggttctggcc gggtccgttg acactcgttc taccgggcgg
     2101 agacaagcgc gtgccgccgg agctgcgcgg ccctgaaggc ggcgtcgctg tacgctggac
     2161 ctctcatgtg gcgctcggca gactcatccg cgcgtacggc gacccgatca catccacgag
     2221 tgcgaacaga cccggcacgc cgcccgcgga ttccgcagcg acgattctgc gcgactggtg
     2281 ggaagcgatt gcacgcgacc agctccgcgt gctggacggc gggacgcttc gtccgtcgga
     2341 gccatccaca gttgtagatt gcatgggcgc acgaccgcgc gtcatccgac cgggcgccat
     2401 cccctcggag acgcttcgga tggccgcacc tactctggtt ccgatcgcat gaacgtcata
     2461 ttcgtttgca cgggcaatac gtgcaggagc ccgctggccg aggcgctcgc gcggcgcgcc
     2521 gcgctggcgc gtggcatcga cgcgacgttc gcgagcgcag gaacgggtgc ggcgcttggc
     2581 tcgccagcga ccgacggcgc gattctcgtc gggctggagc gtgacgtcga cctttccaga
     2641 catcggagtc gcccgctgct tccgggggct gtcaccagtg acaccatcat acttgcgatg
     2701 gcatcgagcc acctcgccgg aattcgcgcc gtcgtaccga atgcacgcgt gtatctgctc
     2761 gacgagtacg gctcgcacgg caagtcgatg cggcacgtcg ctgatccata cggtggcagc
     2821 ctcgatgatt accgcatcgc cgcggacgcg atcgaaatga tgctcgatcc cgtgctcgat
     2881 cggctgctct cggaacacac ttcgggcacg gcgtgaccct gccggcgcgg ctggtactac
     2941 tcggccatcc cgtagcacac tcgctctctc cgagaatcca caacgccgcg ttgcgcgccg
     3001 cagcgatacc actcgaatac actgcgctcg acgtcctgcc tgcacagttg cgcgcgacgc
     3061 tccgtacgct tcgcgcggaa ggggccgctg gcaacgtcac gatcccgcac aagcaagccg
     3121 tgttcgatgc atgcgatcac ctgaccagtg tcgcgaaacg ggcaggtgcg gtgaacacgt
     3181 tctgggtgca ggacggcgag ctgatcggcg acaatactga cgtcgccggc tttgacttcg
     3241 ccgcgcgtga attgatgcag agtgcgcgcg ccgacatgcc caggcgcgta acgctcattg
     3301 gcgcaggcgg cgccgctgct gccgtcgcaa cgacgataag cgattgggac gacgccgagc
     3361 ttgtagtctg gagtcgcgag ctgaaacgcg ccgaggcgct tgcgcagcga tttgctttcg
     3421 cgcgcgcgga a
//
LOCUS       DATIMD010000328         2997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1862217, whole genome shotgun sequence.
ACCESSION   DATIMD010000328 DATIMD010000000
VERSION     DATIMD010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2997
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1862217"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..686
                     /locus_tag="VLI40_07355"
     CDS             <1..686
                     /locus_tag="VLI40_07355"
                     /inference="COORDINATES: protein motif:HMM:NF014799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HSU97028.1"
                     /translation="IQHLPVVFAMDRAGLVGEDGPTHMGLYDIAYMLSIPGATVTAPR
                     NGREMLALLRTSMEHTDGPFSLRYPRDASPDIVPPIAEITPVPFGTWEVLRHGSEFAV
                     LAVGTMVNNALAAADILAAEGLSVTVVNCRFLKPHDEVTLTALLADHRHLLVVEEGTV
                     VNGFGAYMTSVVARLDPAVRVMAHGVADKFIEQASRARQLELTGLDAAGIAERVRALH
                     GSAAEAVAG"
     gene            683..1555
                     /locus_tag="VLI40_07360"
     CDS             683..1555
                     /locus_tag="VLI40_07360"
                     /inference="COORDINATES: protein motif:HMM:NF039482.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+)/NADH kinase"
                     /protein_id="HSU97029.1"
                     /translation="MINIGVIGHQGYPALASIMDVLESEARLLGATLYFEPGLLDVPD
                     DRLLKSPSQIQLALSLGGDGTLLRTARFLDGAAVPILGVNLGRLGFLTSCSAPELKSA
                     LEAVVAGDYDVDERMALRGEAVHGDGAPTDHWQALNDIVMHKGGFARMLSVRVIVDGE
                     RLGDYNSDGVVVASPTGSTAYSLSAGGPLVTPSLDSIILTPISAHALAIRPIVLPPTV
                     TVTLESLDGPDEVLITVDGQAGTRLASGDTLTVRRAPRAVRIVRFPGNSFFDRLRVKL
                     GWGGLPTRDQPKQC"
     gene            1549..>2997
                     /gene="recN"
                     /locus_tag="VLI40_07365"
     CDS             1549..>2997
                     /gene="recN"
                     /locus_tag="VLI40_07365"
                     /inference="COORDINATES: protein motif:HMM:TIGR00634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HSU97030.1"
                     /translation="MLTELRIRNFAIIDSVTLPLERGLNVLSGETGAGKSIIVGALGL
                     LLGERASADLVRPGAERATVEGVFDLAGRPALVALVDERGIDTEGGTLVLKREVAASG
                     RGRAWVNGTPVTATILAEIGRSLVNLHGQHEAQTLLDDESQRQILDAYADATSAARDV
                     ASEYASLATIRRRIEEITRRRADAERRADYLRHVAREIADAQLVPGEDVTLEDDARVL
                     ENADELRTLAQAVSEALSDDEDGALARLASVHRALGQIARIDASASKMQELYDTGFYA
                     LDELTRAASDYASSVELDPERLAGVRARRELIFRLSKKYGGTLADVIATGAAAQAELD
                     LVDSAEFDVAQLRKQEGEASDRLRAAAARLTALRKRAATAIGKAVSAELPQLGMDSGR
                     FTVALTPRPDISPQGAEDVEFRLALNVGYDQRPLARVASGGELARVMLALKTVLAAVD
                     HIPTLVFDEVDAGIGGRVGLQVGDTMRRVAEQH"
BASE COUNT          532 a          928 c          975 g          562 t
ORIGIN      
        1 cgatccagca tcttcctgtc gtgttcgcga tggaccgtgc cggtctcgtc ggcgaggatg
       61 gtcccactca catgggactg tacgacattg cgtacatgct ttcgatcccg ggtgcgactg
      121 ttactgcgcc aaggaacggc cgcgagatgc tggcgctcct gcgcaccagc atggagcaca
      181 cggatggacc gttctcgctg cgatatccgc gtgatgcatc gccggacatc gttccgccga
      241 tcgctgagat cacaccggtc ccgtttggaa cgtgggaggt gctgcgtcac gggtccgaat
      301 tcgccgttct cgccgtgggc acgatggtca acaatgcact cgccgcagcc gacattctcg
      361 ccgccgaagg attgtcggtg accgtcgtca attgtcggtt cctcaagccg cacgacgagg
      421 taacactgac cgcgcttctc gcggaccatc gccatctgct cgttgtggaa gaagggaccg
      481 tcgtcaatgg tttcggcgca tacatgacgt ccgtcgtagc acgactggat cccgcggtgc
      541 gagtcatggc tcacggcgtt gcggataaat tcatcgaaca ggcatctcgt gcccgtcagc
      601 tggaattgac cgggctcgac gcggccggaa tcgcggagcg cgtgcgcgct cttcatggca
      661 gtgctgcaga ggcggtcgcc ggatgatcaa catcggggta atcggtcatc aaggataccc
      721 cgcgctcgct tccatcatgg acgtgctcga aagtgaagca cgtcttctgg gcgcaacgtt
      781 gtatttcgaa ccaggtctgc tcgacgtccc cgacgaccgg ctgctcaagt cgccgtcgca
      841 gatccagctc gcgctctcgc tcggcgggga tggcacgctg ctgcgtaccg cgcgttttct
      901 cgacggtgca gctgttccga ttctgggtgt caatctggga cgcctcggat ttctcacgag
      961 ctgctccgcg cccgagctca aatccgcgct cgaagccgtg gtcgccggtg attacgacgt
     1021 cgatgagcgc atggcgttgc gcggcgaagc ggtgcacggc gatggagcgc ctaccgacca
     1081 ctggcaggcg ctcaacgata tcgttatgca caagggcggc ttcgcgcgga tgctgagcgt
     1141 gcgcgtcatc gtggacggcg agcggctcgg cgactacaac agtgatggtg tagttgtagc
     1201 gtcgcccacc gggtcgaccg cgtacagtct gtcggcgggc ggtccgcttg taacaccgtc
     1261 gctcgattcc atcatcctca caccgatctc cgcacacgca ctggcaattc ggccgatagt
     1321 tcttccgccg accgtgacag tgacgctcga atcgctggac gggccggacg aggtgctgat
     1381 caccgtcgac gggcaggctg gaacgcgatt ggcttcgggt gacacgttaa cggttcgacg
     1441 cgcaccacgc gcagtacgta tagttcgttt tccaggcaac agcttcttcg atcggctccg
     1501 tgtcaagctt ggctggggcg gactgccgac acgcgatcaa cccaaacagt gctgaccgaa
     1561 cttcgaatca ggaatttcgc gataatcgat tcggtaacgc ttcctctcga acggggactg
     1621 aacgttctct ccggagaaac cggagcgggc aagtcgataa tcgtaggcgc actgggattg
     1681 ctgcttggcg agcgcgccag tgcggatctc gtgcgacctg gcgccgagcg cgcgacggtg
     1741 gagggcgtat tcgatctcgc aggccgtcca gcgctcgtcg cgctcgttga cgagcgcggc
     1801 atcgatacgg aaggcgggac tctggttctc aagcgcgagg tcgccgcatc gggccgcggc
     1861 cgcgcgtggg tgaacggcac gccggtcacc gccaccattc ttgcggagat cggccgctcg
     1921 ctggtcaacc tgcacggtca gcacgaagcg cagacgctcc tggacgacga gtcgcagcgc
     1981 cagattctgg atgcgtacgc cgatgcgact tcagcagcgc gcgacgttgc ttcggagtat
     2041 gcgtcgctcg ccacgatccg acgaaggatt gaagagatca cccggcggcg tgcagacgcc
     2101 gagcgccgtg cggattatct gcgacatgta gcgcgcgaga tcgctgacgc gcagctcgtt
     2161 ccgggcgagg atgtgacgct cgaggacgac gcgcgtgttc tcgagaacgc agacgagctg
     2221 cgtacgctgg cgcaggcagt gtcggaggca ctgagcgacg acgaggatgg cgcgcttgcg
     2281 cgcctggcgt cggtccatcg tgctctcggc cagattgcga ggatagatgc aagcgcatcg
     2341 aagatgcagg agctgtacga cacaggcttc tacgcgctcg acgagctgac gcgcgcggcg
     2401 tccgactatg cgtcgtcagt cgaactcgat cccgagcgcc tcgccggcgt ccgggcacgt
     2461 cgcgagctga tctttcgcct gagcaagaaa tatggcggca cgctcgcaga cgtcattgcg
     2521 actggcgccg cggctcaggc cgagctcgat ctcgtcgatt ccgccgaatt cgatgtagcg
     2581 cagctccgga aacaggaagg tgaggcatcg gatagactgc gcgctgccgc agcgcgcctg
     2641 acagctctcc gcaaacgcgc agctacggcg atcggcaagg cagtatctgc cgagctcccg
     2701 cagctgggaa tggattccgg ccgcttcacg gtcgcactga ctccgcgccc ggatatttca
     2761 ccgcagggcg ccgaggatgt tgaatttcgt ctcgcgctga acgtcggtta cgatcagcga
     2821 ccgctcgcaa gagtcgcgtc cggcggcgaa ctcgcgcgcg tgatgctcgc gcttaaaaca
     2881 gtgctcgcgg ccgtcgatca tatcccgaca ctcgtattcg acgaagtcga cgccggaatc
     2941 ggcgggcgcg ttggcttgca ggtgggcgac acgatgcgcc gcgtcgccga gcagcat
//
LOCUS       DATIMD010000329         1680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3593587, whole genome shotgun sequence.
ACCESSION   DATIMD010000329 DATIMD010000000
VERSION     DATIMD010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3593587"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /locus_tag="VLI40_07370"
     CDS             complement(<1..584)
                     /locus_tag="VLI40_07370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97031.1"
                     /translation="MPTPSHNPYPVNSRRQFLLKAPIGILGAIVACRSNEQAAGTRPA
                     TGAAGTAGAAGAPPGAPPAFNTAPPVGPEVSPATFAEAEKLMQVSMTDAERQMAAGSW
                     RTSMAALVERRVGPRKVQLAATLAPATVWNPDIGGQPTGPTRDKFARSATNPGPLPAS
                     DEDIAFAPVTQLSGWIETRKITSDRLTRIYLDRLT"
     gene            complement(767..>1680)
                     /locus_tag="VLI40_07375"
     CDS             complement(767..>1680)
                     /locus_tag="VLI40_07375"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HSU97032.1"
                     /translation="CGCSKSTPFANGAPATAFPSHPFDHFILIVLENEDAATIERIPY
                     MDSLGRAGATLRAYFAVAHPSYPNYLALVAGRTFSTADPGVKHDAEAYNSRDFGDAQL
                     LIDAPTIADRLEAKGLTWDAFAEDYPDTSATPSSCYFGRARGNYARKHVPFLSFAEFH
                     TRPQMCAHVRNLRWFNKDSLAAYTFITPNMIHDGHDAPIDSAVTWLRSFLAPILADSA
                     VMQSTVIAITFDESASTFSDRFRGSRANRVFAVLLGGPIKPGADSDFPLTHYSMLRTV
                     EENFDLAPSLVPANTRPIVGVWKATSP"
BASE COUNT          300 a          492 c          562 g          326 t
ORIGIN      
        1 gtgagtctgt cgagatagat ccgcgtgagc cgatcggacg tgatcttgcg cgtctcgatc
       61 cagccggaca attgtgtcac tggagcaaag gcgatgtctt catcgcttgc tggcaatgga
      121 cccggatttg tggcgctacg cgcaaatttg tcgcgagtcg gtccggtcgg ttgaccgccg
      181 atgtccggat tccagacggt cgcaggagcg agcgtcgccg ccaactgcac cttgcgcggc
      241 ccgacacgcc gctcgacgag tgccgccatg gacgtgcgcc aactcccggc cgccatctgt
      301 cgttccgcgt cggtcattga cacctgcatc aacttctccg cctcggcgaa cgtggccggc
      361 gatacctcgg gaccgactgg tggcgcggtg ttgaaagctg gcggcgcgcc cggcggtgcg
      421 cctgctgcgc cagctgtacc tgctgcaccc gtcgcaggac gggtccctgc ggcctgctcg
      481 ttactacgac aggcgacgat agcgccgagg ataccgattg gtgccttgag cagaaactgg
      541 cgacgggaat tcacgggata cgggttgtgg gatggtgtcg gcacgatctc gagccgccgc
      601 gcgcagtggc gggctcgccg cattaataag cgtcgcgacg tccgtatccg ctagacgagc
      661 gcgcggcgaa cggctgcatg cctacgggct gcggtatgca ggctggcgcg aacaacgcgc
      721 tattgcgccg ccaggtctgt gctggttggc gccggtcgga gacggctcag ggtgaagtcg
      781 ctttccacac gccgacgatc ggtcgcgtat ttgcgggaac gagtgatggt gccaggtcga
      841 agttctcctc gactgttcgc agcatgctgt agtgcgtaag cggaaagtcg gaatccgcac
      901 cgggtttgat cggcccgccc agcagcaccg caaagacgcg attcgccctg ctgccgcgaa
      961 atcggtcgct gaacgtgctc gctgactcgt cgaacgtgat tgcaatcacc gtcgattgca
     1021 tcactgcgga atccgcaagg attggagcaa gaaagctgcg gagccatgtc accgcactgt
     1081 cgatcggcgc gtcatggccg tcgtgaatca tgttcggagt gatgaacgtg tacgcggcga
     1141 gcgagtcctt gttgaaccat ctcagatttc gcacgtgcgc gcacatctgt ggccgcgtat
     1201 ggaactcggc gaagctcagg aagggtacgt gtttgcgtgc atagttgcct cgcgcccggc
     1261 cgaagtaaca tgacgacggc gtcgcgctcg tatcgggata gtcttcggcg aatgcatccc
     1321 aggtcaagcc tttggcttcg agccgatcgg cgatcgttgg cgcatcgatc agaagctgag
     1381 cgtcgccaaa gtcgcgtgag ttatacgcct cggcgtcatg ctttacaccc ggatcggcgg
     1441 tggagaacgt ccggcccgca acgagcgcga ggtagttcgg ataggacgga tgcgcgactg
     1501 cgaagtacgc gcgcagcgtg gcgccggcgc gtccaagcga gtccatgtac ggaattcgtt
     1561 ctatggtcgc cgcgtcttca ttctccagga cgatcaggat gaagtgatcg aagggatgcg
     1621 acgggaatgc cgtggcaggc gcgccgttgg caaatggcgt gctcttgctg cagccgcaga
//
LOCUS       DATIMD010000330         2061 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5040193, whole genome shotgun sequence.
ACCESSION   DATIMD010000330 DATIMD010000000
VERSION     DATIMD010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2061
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5040193"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..774)
                     /locus_tag="VLI40_07380"
     CDS             complement(<1..774)
                     /locus_tag="VLI40_07380"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HSU97033.1"
                     /translation="MTTPLTAGIVNKLRAVVGDRYVLMRDAELLAYESDGLPGYHKRP
                     NVAEFPGSRDEVVEVVRLLAESGTQFVPRGAGTGLSGGALADDVVLLGLHRLKAVLDM
                     DIARMRATVEPGVVNAALNKRLAPHGVFYAPDPSSEAACTIGGNIAENSGGPHCLKYG
                     VTLNHVLAATVLLPDGEVVELGDRDGGMTGYDLLGAFVGSEGCFGIALDITVRLTRKP
                     AAVRTALADFMDVADASHATSAIIASGVVPAALEFMDSGV"
     gene            complement(771..1655)
                     /locus_tag="VLI40_07385"
     CDS             complement(771..1655)
                     /locus_tag="VLI40_07385"
                     /inference="COORDINATES: protein motif:HMM:NF012981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HSU97034.1"
                     /translation="MIPAFVNDAAGTAPAAKRALEEAGGFEIHAIPPNALESSIRSAM
                     ASKPARIAVAGGDGTVGTAARVLCGTDTALAVLPGGTLNHFARDHGIPIDPQQAAAIA
                     IDGEIGRADVAYVDEYLFLNTSSVGAYVAYVRLRKRVQRYVGYRIASLLAALRMFISM
                     RSVMLELDVKGERRIYSTPIVFIGVGERETRSPTLGNRVAGGRQCLHVIVVRERRAAR
                     LLVVALDAATRGLDSVAHTPELDSFMVDSCTIRMGGRQHHVAIDGEIVMLGMPLQYRL
                     SKDALRIVVPAEPAKSAA"
     gene            complement(1720..>2061)
                     /locus_tag="VLI40_07390"
     CDS             complement(1720..>2061)
                     /locus_tag="VLI40_07390"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSU97035.1"
                     /translation="SLDAPIDRSDREASTLGERFAGVDGGEIEEVTDFKLMRESIDRA
                     FKKYLTPRERKILYLYYGLGQDSEAMTLEKIGSLLGVTRERIRQIRERAFEKLRQSPD
                     GGALSGFWGAA"
BASE COUNT          382 a          715 c          583 g          381 t
ORIGIN      
        1 cacgccgctg tccatgaact cgagagccgc cggaaccacg cccgatgcaa tgatcgccga
       61 cgtcgcgtgc gacgcgtccg caacgtccat gaagtctgcc agcgcagttc gcaccgcagc
      121 cggttttcgc gtgagtcgca cggtaatgtc cagcgcaatc ccgaaacatc cttcggaacc
      181 tacgaacgcg ccaagtagat cgtagccggt catgccgcca tcgcgatcgc ccagctcgac
      241 tacctcgccg tcaggaagca gaacagtggc cgcgagaacg tgattcagtg tcacaccata
      301 tttgagacag tgcggaccgc cggaattctc ggcgatgttg ccaccgatcg tgcacgctgc
      361 ctcgctggat gggtctggcg cgtagaacac gccgtgcgga gcgagccgct tgttcagcgc
      421 cgcgttgacg actcccggct cgaccgtcgc gcgcattcgc gcgatgtcca tgtcgagcac
      481 ggccttgagc ctgtgcaggc cgagcagcac cacgtcgtct gcaagtgcgc cacccgatag
      541 tcccgttcca gcgccgcgcg gcacgaactg tgttccggac tcggcaagca accgtaccac
      601 ttccactact tcgtcgcgcg atccgggaaa ctccgcgacg ttgggacgct tgtgataacc
      661 tggcaggccg tctgattcgt acgccagcag ctccgcgtcg cgcatgagga cgtatctatc
      721 gcccaccacg gcgcgcaact tattgacgat tccggcggtg agtggtgttg tcatgcagcg
      781 ctcttcgccg gttccgccgg caccacgatc ctgagcgcgt ctttcgacag gcgatactgc
      841 aacggcatcc cgagcatgac tatctcaccg tcgatggcga cgtgatgctg ccttccaccc
      901 atccttatcg tgcacgagtc caccatgaaa ctgtccagct ccggcgtgtg tgccacgctg
      961 tccagaccgc gggtcgccgc gtccagcgcg accacgagca atcgtgccgc gcgacgttcc
     1021 cgcaccacga tcacatgcag acactgccgg cctcccgcca ccctgtttcc cagcgttggc
     1081 gagcgcgtct cgcgctcacc aactcctatg aagacaatcg gcgtgctgta gatacgccgc
     1141 tcgcccttga cgtccagttc cagcatgacg gaacgcatcg aaatgaacat ccgcagtgct
     1201 gcgagcaggc tggcgatccg gtagccgacg tatcgctgta cgcgctttct caggcgaaca
     1261 taggcgacgt acgcgccaac cgagctcgtg ttgagaaaga gatactcgtc cacgtacgca
     1321 acgtcggcgc gcccgatctc accatcgatt gcaatcgcag ccgcttgttg cggatcgatc
     1381 ggaattccat ggtcgcgcgc gaaatgattc agcgtcccac caggcagcac cgcgagcgcc
     1441 gtgtccgtcc cgcacaacac gcgtgctgcg gttccgacgg tgccgtcgcc gccggcgaca
     1501 gcgattcgtg caggcttcga tgccatcgcg ctccggatgc tgctctccag cgcgttcggc
     1561 ggaattgcat gaatctcgaa gccgccggcc tcttcgagcg cgcgcttcgc cgcgggcgcg
     1621 gttccggcag catcgttgac gaacgcgggg atcacaatgg gtaaaataaa gcgagggccc
     1681 catctacggg ccctcgtcgc actttcggat acgcccggac tacgccgcgc cccagaaccc
     1741 cgatagcgcg ccaccatccg gagactgccg cagcttctcg aatgcccgct cgcgaatctg
     1801 acggatccgc tcgcgcgtca caccgagcag cgatccgatc ttctccagcg tcatcgcttc
     1861 cgaatcctga ccgagcccgt aatacaggta cagaatcttc cgttcgcgcg gcgtgagata
     1921 cttcttgaat gccctgtcga tcgactcgcg catgagtttg aagtcggtca cctcttcgat
     1981 ctcgccgcca tccactccgg cgaaacgctc acccagtgtc gacgcttcac gatcgctgcg
     2041 gtcgattggt gcatccagcg a
//
LOCUS       DATIMD010000331         3965 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3017711, whole genome shotgun sequence.
ACCESSION   DATIMD010000331 DATIMD010000000
VERSION     DATIMD010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3965
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3017711"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1580)
                     /locus_tag="VLI40_07395"
     CDS             complement(<1..1580)
                     /locus_tag="VLI40_07395"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HSU97036.1"
                     /translation="MPPKPLVLALSAVALCGAVYAGMRPVGPLPPLGGLLDPVSGVWG
                     TAGNAFQSRNAAVRIPGLQGAVDVRYDDRGVPHIFATTEEDAYRALGYVVARDRLFQL
                     DIQTRAASGRLTELVGARALELDQSPRLLGMPRAAERKLAALDSNTESRRILDAYAGG
                     VNAYIDSLEPRDYPIEYKLLNAKPERWQPINSIHLLNRMGWTLAAGDPDHLLVRAAAL
                     VGDSAARSVFPQHTPIEEPIQPEPGWVAPHDHFEQIAPPGTPDSNAMALSSLYRRFRA
                     DDPEAESQQAFASNNWAVSPARTRDGYALLAGDPHLELTLPSIWYEVHIVVPGKLDVY
                     GVTIPGAPAVVIGFNRDISWTFTNTSADVMDFYRETVDDSINPTKYRLDGQWRPLSRR
                     VEQYRDQSGRVIHTDTVRYTHRGPMTNEHGHWVSMRWTVLEPSNELRALYDASHAHDA
                     REFQDVVSRSFFAPAQNMLVADRSGSIAIRSTGHFPIRAGDGDGETIRDGSTSASDWR
                     GFWPIDRYPQSFNPSQGFL"
     gene            1739..2272
                     /locus_tag="VLI40_07400"
     CDS             1739..2272
                     /locus_tag="VLI40_07400"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSU97037.1"
                     /translation="MSEAHLIARVLEGDRLAGRELYDAHAPRVYRLAYRMTCDEDMAR
                     ECTQDTFVRAFSKLNGFRQQAAFGTWIHRIAVSVVLQAMRSNRRRSARFVDIEEAHDV
                     ATGDDAHDAELASRLERAVDELPEIYRTALIMHDLEGYTHAAIADVLSIAEGTSKTRV
                     AHARARLRDTLTALRDQ"
     gene            2314..3123
                     /locus_tag="VLI40_07405"
     CDS             2314..3123
                     /locus_tag="VLI40_07405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97038.1"
                     /translation="MNETIRQTLIASRRPPEPPLDAMWAQIEARVFDDAAPRLVLHVN
                     RSRWLTPTLAAAAALVLGVGLGWYAAPRNVVTRIVASPVSASAATSAVPVATPTAPTQ
                     RTASAETNPPSPVDANSMAVALHSHATEPERDTRSVAATFSPDPVAARLASQFNDAGS
                     GSDMSRYLAQTAVLLASLPSDRAATESDTAVAARAGELLTQTHLLLDSKAGSDPTLHR
                     LLEDLELVLAQVARLRGQRNGTDLQLIHQTLTAHDVLPRVHDATIEASITD"
     gene            3137..>3965
                     /gene="bamD"
                     /locus_tag="VLI40_07410"
     CDS             3137..>3965
                     /gene="bamD"
                     /locus_tag="VLI40_07410"
                     /inference="COORDINATES: protein motif:HMM:NF024915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HSU97039.1"
                     /translation="MRIPISRLATFVSTTSAMSLLASAVPAQTSAPTLAPVAPEMIAP
                     LDRLEDLEWIDRDATRNLAASAARIAVADSWKVATNVAPMAITLGARDLDFGFDYAPR
                     AFARLPESPRASWAADDPADSLYRLARQTLNSGEYRRAAQLFAQITRQYPTSQYRADA
                     AYWRAFALYRIGGIADLHEALQALDSAGTGNTPTSSKGRTRVSAATMTMATPAASPGG
                     SPTIYMNWVRSPDRESAVLATRIRGALAARGDATAAAQIARTADSSATSCDEEDAQLR
                     "
BASE COUNT          760 a         1267 c         1218 g          720 t
ORIGIN      
        1 agaaatccct gacttggatt gaatgactgc ggatatctgt cgatcggcca gaatccccgc
       61 cagtcgcttg cgctcgtgga gccgtcgcga atcgtctcgc catctccgtc accagcccga
      121 atcggaaagt gaccggtcga gcgaatcgcg atcgagccgc tgcgatcggc cacgagcatg
      181 ttctgcgcag gcgcgaagaa gctgcgcgat accacatcct gaaattcgcg cgcatcatgt
      241 gcgtgcgatg cgtcgtacaa tgccctcagc tcgttggacg gctcgagcac ggtccagcgc
      301 atcgataccc agtgaccatg ttcgttcgtc atcggaccgc gatgtgtgta acgtaccgta
      361 tcggtatgaa tcacgcggcc cgactgatcg cgatactgct ccacgcgtcg cgagagcggg
      421 cgccactgtc cgtcgagcct gtatttcgtc gggttgatgg agtcgtcgac ggtctcgcga
      481 tagaaatcca tcacgtccgc gctggtgttc gtgaaggtcc acgatatgtc gcggttgaat
      541 ccaatcacca ccgccggcgc gcccggaatc gtaactccgt acacgtcgag ctttcccggc
      601 accacgatat gaacctcgta ccagatgctc ggaagcgtca gctcgagatg cggatcaccg
      661 gcgagcagcg cgtacccatc tctcgtgcgc gcgggcgaca ccgcccagtt gttgctcgcg
      721 aatgcctgct gtgattccgc ctcgggatcg tcggccctga aacgtcgata caaggacgac
      781 agggccatcg cgttgctgtc cggcgtgccc ggcggcgcga tctgctcgaa gtgatcatgc
      841 ggcgcgaccc agccgggttc cggctggatc ggctcttcta taggtgtatg ctgcggaaac
      901 accgatcgtg cggcactgtc accgacgagc gcggccgcac gcacgagcag gtgatccgga
      961 tcgcctgccg cgagcgtcca tcccattctg ttgagcagat gaatcgagtt gatcggctgc
     1021 caacgctcgg gctttgcatt gagcagtttg tactctatcg ggtagtcgcg cggctcgagt
     1081 gagtcgatgt atgcattcac accaccggcg tacgcgtcca ggatccggcg cgattcggtg
     1141 ttggaatcca gagcggcgag tttgcgctcg gcggcgcgcg gcattccgag cagtcgtggc
     1201 gattgatcca gctccagcgc gcgcgctccg accagctcgg tgagccgacc cgaggcagca
     1261 cgcgtctgaa tgtcgagctg gaacaggcga tcccgcgcca cgacgtaacc cagtgcgcga
     1321 taggcgtcct cttcggtagt cgcaaatatg tgagggacgc cccggtcgtc gtaccgaacg
     1381 tcgaccgcac cctgcagacc gggaattctg acggccgcat ttcgcgactg gaacgcattg
     1441 cctgccgtcc cccagactcc gcttacggga tcgagcaacc cgcccagcgg ggggagtggt
     1501 ccgaccggac gcatgccggc atagacggcg ccgcagagag cgacggcaga aagtgcgagt
     1561 acgagtggtt ttggcggcac gatcagagtg cgagtaagat acagcgccga gctcgattcg
     1621 ccccagtgaa cgcttttttg atagccggca tccaactctc agtccaccgc gagattgggg
     1681 gcaacgacca ctgacacctt gggagctttc cagtaccacc atccagcggt agcggcgcat
     1741 gagtgaagcg cacctgatcg cacgggtgct ggaaggcgac cggctggccg gccgcgagct
     1801 gtacgacgct catgcaccaa gggtttatcg gttggcgtat cgcatgacgt gcgacgagga
     1861 catggctcgg gagtgtaccc aggacacctt cgttcgcgca ttctcgaaac tgaacggatt
     1921 ccggcagcaa gcggcgtttg gaacgtggat tcatcgaatt gcggtgtcgg tcgtgttgca
     1981 ggcaatgaga agtaatcgcc ggcggtccgc tcgcttcgtg gatatcgaag aagcgcacga
     2041 cgtcgccact ggagatgacg cgcacgatgc cgagttggca agtcgtctcg agcgtgcggt
     2101 ggatgaactg ccggagatat atcgcaccgc gctcatcatg cacgacctgg aaggctacac
     2161 gcacgccgcg atcgccgacg tgttgtcgat tgcggaagga acgtccaaga cacgcgttgc
     2221 gcacgcacgt gcaaggttgc gcgacacgct gacggctttg agggatcagt gatatccggg
     2281 aatgacgggg aggcaccgat ggaagacgaa cgcatgaatg agacaattcg gcagacgctg
     2341 atcgcatccc ggcgcccgcc agagccgccg ctcgacgcga tgtgggcaca gatcgaggca
     2401 agagtcttcg acgatgctgc accgcgcctc gttctgcatg tcaacagatc gcgctggctc
     2461 actcccacgc tcgccgcagc ggcggcactc gtgctcggcg tcggactcgg ctggtacgcg
     2521 gcaccgcgca acgttgtcac acgcatcgtt gcatcgcccg tctcggcaag tgcagcgacg
     2581 agtgcggtac cggtcgcaac gccgaccgca ccaacgcaac gcactgcgtc cgccgaaacg
     2641 aacccgccga gccctgtcga tgctaacagc atggcggtgg cgcttcattc tcatgcaact
     2701 gagccggagc gtgacacgcg ttctgtcgct gcaacgttct ctccggaccc ggtcgccgcg
     2761 cgactcgcat cgcaattcaa cgatgccgga agcggatccg acatgagccg ctacctcgcg
     2821 cagaccgccg tgctgctcgc ttcgcttcca tccgatcgcg ctgcgaccga atccgacacg
     2881 gcagtcgcag cgcgcgccgg cgagttgctt acccagactc atctgctcct cgattcaaag
     2941 gctggcagcg atccaacact tcacagactg ctcgaagacc tggagctcgt actggcgcag
     3001 gtcgcgcggc tgcgcggcca gcgtaacgga acggatctcc aactgataca tcagacactc
     3061 actgcccacg acgtacttcc gcgcgtccat gacgcgacga tcgaagccag catcaccgac
     3121 tgaggattca ttgcacatgc gcattcccat ttcgcgtctc gccacattcg tctcgaccac
     3181 ttcggccatg tcgctccttg cgtcggccgt gcctgcacag acatccgcgc cgacgctcgc
     3241 tcccgtcgcg ccagagatga tcgcgccgct tgacaggctc gaagatctcg agtggatcga
     3301 tcgcgacgca acccgcaacc ttgcagcgtc ggccgcacgc atcgcagttg ccgactcatg
     3361 gaaagtggcg acgaacgttg ctcccatggc catcacgctc ggagcgcgcg accttgattt
     3421 tggtttcgat tacgcaccac gcgcgttcgc ccggcttccg gagtcgccgc gcgcatcatg
     3481 ggcggcggac gatcccgccg attcgctcta ccgcctggcg cgtcagactc tcaattcggg
     3541 tgaatatcgc cgagctgcgc aattgttcgc gcagatcacc cggcaatacc cgacgtcgca
     3601 gtaccgtgcg gatgccgcgt actggcgcgc atttgcactc tacagaattg gcggaattgc
     3661 cgatctgcac gaagcgctgc aggcgctcga ttcagcgggg acaggtaaca cgcccacttc
     3721 gagcaagggg cgcacgcgag tgtctgcagc gacgatgacg atggccactc ccgctgccag
     3781 tccgggcggc tcgcccacga tctacatgaa ttgggtgaga tcgccggata gggaatcggc
     3841 ggtcctcgca accaggattc gcggcgcact cgcggcacgc ggcgatgcaa cggcagcggc
     3901 tcagattgcg cgtacagctg attccagcgc tacgtcatgc gacgaggaag atgcacagtt
     3961 gcgcg
//
LOCUS       DATIMD010000332         2537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3304533, whole genome shotgun sequence.
ACCESSION   DATIMD010000332 DATIMD010000000
VERSION     DATIMD010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3304533"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2294
                     /locus_tag="VLI40_07415"
     CDS             <1..2294
                     /locus_tag="VLI40_07415"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSU97040.1"
                     /translation="TFPSMAVIPRNGNTRLAQIHGVGAGYPLYGEITTEPSGRYATLQ
                     SGPNALVDPSLLIVLDARVGDTLKVGFGKFVITGTLKDVPGTSGLSSAFAPRIYIPAR
                     YLPETRLLVFGSTAEYSALLKLPADQDPKAFAAPFRAPLTKQDVNVRTVTQTEESAAR
                     ATENLANFIGIVGMVALLLGGIGVASGVRAFVARKIDTVAIFRCLGASGNQVLAMYVV
                     QAAAMGLLGALLGAAGGVVIQFLLPLAFAGLLPVDVHVSIEPVAILTGVLIGGWIALV
                     FALRPLLALRNVSPLQTLRRDADSEVLRMHWNDIPRLVVDAALVLSVVAVAVARAQSV
                     RQGLWIAAATGGVLLVLALVASALSWGARRSVRAGWPYVVRQGLANVYRPANQTRAVM
                     LSLGFGAFLVTTLYLVQNSIVRDLSLNASSSGANLLMFDVQQDQAAPIDSVIRARGFK
                     VTQQSPVVPMRIASINGRSTESIVGDSARNRRAGWAVRREYRSTYRDSITAGETLAEG
                     KWFAPESAGTKPFVPGDTGEVSLDAGVAGELKVKVGDEITWNVQGVDIPTRVTSLRDV
                     KWTRFEPNFFAVFPSRVLRDAPHQFTVLANVPGALDVATVQRDVVRRFPNVSSIDLSL
                     ITETIGKIVARVSTAVRFMALFSVIMGIPVLFSAVSSTRRERIRESVLLKTLGATRAQ
                     IMRILLTEYALLGILGSLTGLVLALAGSWALVHFVFDVKYTPQFGPAIAITVVMMVIA
                     ISIGVIAGRDVFKETAMTALREG"
BASE COUNT          436 a          777 c          823 g          501 t
ORIGIN      
        1 cgacgtttcc atcaatggcc gtaatcccgc gcaatggcaa cactagactt gcgcagattc
       61 atggagtggg cgccggatat ccgctctacg gcgagatcac cacagagccc tcaggccgct
      121 acgcgaccct gcaatcgggc cccaacgcgc tggtcgatcc atctctgctc atcgtgctcg
      181 atgcacgcgt cggcgacacg ctcaaggtcg gcttcggaaa gttcgtcatc actggaacgt
      241 tgaaggacgt tcccggaacg tccggtctct cgtccgcgtt cgcgccacgg atctacattc
      301 ctgcgcggta tctgccagag actcggctcc ttgtcttcgg aagcaccgcc gagtactcgg
      361 cgcttctcaa gcttccggcc gatcaggatc ctaaggcgtt cgcggcaccg ttccgtgcgc
      421 cgctcaccaa gcaggacgtc aacgtgcgaa cggtaacgca gaccgaagaa tcagccgcga
      481 gggcaaccga gaaccttgcc aacttcatcg gtatcgtcgg catggtcgcg ctgctgctcg
      541 gcggcattgg cgtcgccagc ggtgtacgtg ctttcgtcgc gcgaaagatc gataccgtcg
      601 cgatcttccg gtgtcttggc gcttcgggca atcaggttct cgcgatgtac gtggtgcagg
      661 cagctgcgat gggtctgctc ggtgcgctgc ttggcgcggc agggggtgtc gtcatccagt
      721 ttctgctccc gctcgcattt gcgggcctgc tgccggtaga tgtgcatgtc tcgatcgagc
      781 ccgtggcaat actcaccgga gtgttgatcg gcggctggat cgcgcttgtg ttcgcactgc
      841 gcccgctgct cgcgctgcgc aacgtctcgc cgcttcagac gctgagacgc gacgccgatt
      901 cggaggtgct gcgaatgcac tggaacgaca ttccgcggct cgtcgtcgac gcagcgctgg
      961 tgctcagcgt cgttgccgtc gccgtagcgc gcgcacaatc cgtgcggcag ggtctctgga
     1021 tcgcagcagc aaccggcggc gtcctgctgg tgctcgcact ggtcgccagt gcgctatcgt
     1081 ggggcgcgag gcggtcggtg cgcgcgggat ggccttacgt agtgcgccag ggtctcgcga
     1141 acgtgtacag accggccaat cagacgcgcg cggtgatgct gtcgctcggg ttcggcgcct
     1201 ttctcgttac cacactgtat ctggtgcaga acagcatcgt gcgggacctg tcgctcaatg
     1261 cgtcatcatc cggcgcgaat ctgttgatgt tcgacgtgca gcaggatcag gccgcgccaa
     1321 tcgactctgt aattcgcgcg cgcgggttca aggtgacgca gcaatcgccc gtagttccga
     1381 tgcgcatcgc atcgatcaac ggcaggagca ccgagtcgat cgtcggtgat tccgccagga
     1441 accgacgcgc aggctgggcg gtgcgacggg agtaccgttc gacgtatcgc gactcgatca
     1501 cggccggcga gacgctggcc gaaggcaagt ggttcgcgcc ggaaagtgca ggtacgaaac
     1561 cgttcgttcc cggcgacact ggcgaagtat cgctcgacgc aggcgtcgca ggcgagctca
     1621 aggtcaaggt cggcgacgag atcacctgga acgttcaggg cgtcgacatt cccaccaggg
     1681 ttacaagtct ccgcgatgtg aagtggacgc ggttcgagcc aaacttcttc gcggtattcc
     1741 cgagccgcgt gctacgcgat gcgccgcatc agttcaccgt gctcgcgaac gtgccaggtg
     1801 cactggacgt cgcgacggtc cagcgcgacg tcgtgcgcag gttcccgaac gtgagcagca
     1861 tcgatctatc gctgatcacc gagacgatcg gaaagatcgt tgcacgcgtg tcgaccgcgg
     1921 tacggttcat ggcgctgttc agtgtcatta tgggaattcc ggttctgttc agcgcggtat
     1981 cgtcgacgag gcgcgagcgc atccgagaga gcgtgctgct caagacgctc ggtgctacgc
     2041 gcgcgcagat catgcggatt ctacttacgg agtatgcgct gctcgggata ctcggcagcc
     2101 tcaccggact tgtactagcg ctggctggca gctgggcgct ggttcacttc gtgttcgatg
     2161 tcaaatacac gccgcaattc gggccggcga tcgcgatcac ggtggtgatg atggtgattg
     2221 cgatttcgat cggggtgatc gcgggccgcg atgtgttcaa ggaaacggcg atgacggcgt
     2281 tgcgggaggg gtagacgacg tcattcgacg cgccgggttg gtacgcgttc ccgacggcgc
     2341 taaccacgca ccgaattggc ggtcctgcgt agggcgcgga ttcatccgcg cctggccccc
     2401 atggatgcaa tcgaacgcgg atgaacatgg atgtcgccgg attcatccgc gcccggcccg
     2461 gttacgcgcg atcggaattc gattaacgcc gcgtcaacat gaccgcgcaa cccgcctggc
     2521 cccgtcacgc gcaatcg
//
LOCUS       DATIMD010000333         2457 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5041517, whole genome shotgun sequence.
ACCESSION   DATIMD010000333 DATIMD010000000
VERSION     DATIMD010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2457
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5041517"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..1223)
                     /locus_tag="VLI40_07420"
     CDS             complement(81..1223)
                     /locus_tag="VLI40_07420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97041.1"
                     /translation="MNKHCSMIRSMLVRMTTAVAAAILIAPVAHAQVAVDFPLSVDNL
                     PTYDRVNGLSIPFGPTITVGDERLVVNPAVTYRSHLGKIDPSLSIVGQFTADSTVGFA
                     LTGSRGTFTNDGWIRSNLINSLVAFGLGRDSRNYFRGDRAEARLTSSLHLPVDVATVF
                     VGARTERDWSTGWRSGSNMGPYSIFNNSDTTNGIERPNPAIDAGHITSAIAGGHLEYA
                     GLPASLLVDVRLEAAGKTPLGGNFQQLTLDEGASIKTVAGQHLDIRGHLVATATSSAT
                     PRQRYAYVGGSGSLATVDLLSLGGDHLYLLDALYAIPINNVEIPILGNPYIAPHFAMG
                     AAAVGGFGRPAQNIGARLGVSIFTLDYVINPRTHKSDFGAGISLAP"
     gene            complement(1220..1795)
                     /locus_tag="VLI40_07425"
     CDS             complement(1220..1795)
                     /locus_tag="VLI40_07425"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HSU97042.1"
                     /translation="MILVIDNYDSFTYNLVQYLGELGAEVIVRRNDEIPAAEVGALGP
                     AAIVLSPGPRTPAEAGITLDVIRTYGSSIPILGVCLGQQAIGAAYGGRVVRANRLMHG
                     KTSEVRHNGSGLFAGLPDPLRVMRYHSLTVDRDSLPSDLEITAWSDDDSTEVHAMQHR
                     THPVYGVQFHPESVLTEGGKQLLRNFLDVAR"
     gene            complement(1792..>2457)
                     /locus_tag="VLI40_07430"
     CDS             complement(1792..>2457)
                     /locus_tag="VLI40_07430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase"
                     /protein_id="HSU97043.1"
                     /translation="FLLNEGHVVRDPSERLETPKRWRELPDVLSAEEVAKLIETPTLD
                     EPMAFRDRAMLELAYGAGLRVGEWITLGVRDLMLDESLVRVFGKGAKERLVPIGRKAV
                     GAVAIYLRELRPKLEKGSGEGILFLNARGEPMTRMGAWKILRKHVDASGITKHVTPHT
                     LRHSFATHLLEGGADLRAVQEMLGHADISTTQIYTHVDREYLRSVHKQFHPRERLSDV
                     THK"
BASE COUNT          485 a          760 c          748 g          464 t
ORIGIN      
        1 ctgtcgcgtt tgcccgacaa tagaaggatc gtcgccacac attttctctt cgatcacata
       61 tatagagccg cgcggagcgg ctacggcgcg agcgaaatcc ctgcgccgaa gtcggatttg
      121 tgagttctgg gattgattac gtaatcgagc gtgaagatcg agacgccgag ccgcgcgccg
      181 atgttctggg ctggccggcc gaatcccccg actgcggcag cgcccatcgc aaaatgggga
      241 gcgatgtacg gattgcccag gatcgggatc tcgacgttgt tgatcggaat ggcgtacagc
      301 gcgtcgagca gatacagatg atcgccaccc aggcttagaa gatccaccgt cgcgagcgag
      361 ccggagcccc ccacataggc gtatcgctgg cgcggcgtgg ccgagctcgt tgcggtcgcg
      421 acgagatggc cgcggatatc gagatgttgt ccggcgacag tcttgatgct cgcgccctcg
      481 tcgagcgtca actgctggaa attgccaccc agtggcgttt tgccggcggc ttccagccgc
      541 acatccacaa ggagggacgc aggtaacccg gcgtactcca gatgcccgcc agcgatggcg
      601 gacgtgatgt ggccggcgtc gatcgcggga ttcgggcgct cgattccgtt agtcgtgtcg
      661 ctgttattga agatgctgta cggacccatg ttgcttccac tacgccagcc ggtggaccag
      721 tcccgctccg tccgtgcgcc cacgaacacg gtcgcgacgt cgaccgggag atgcaacgac
      781 gacgtgagtc gcgcttctgc ccgatcgcca cggaaataat ttcttgaatc gcggccgagg
      841 ccgaacgcga cgagggaatt gatgagattg gagcgaatcc agccgtcgtt cgtaaacgtg
      901 ccgcgcgagc cggtgagtgc aaaacccacg gtcgagtcag ctgtgaactg tcccacaatc
      961 gagagcgacg gatcgatctt gccgaggtgc gagcgatacg taactgcggg attcacgacc
     1021 agtcgctcgt cacccacggt tatggtcgga ccgaacggaa tcgacaggcc gttaacgcga
     1081 tcgtacgtgg gcaggttgtc gaccgagagt ggaaagtcga cagctacctg tgcgtgtgct
     1141 acgggtgcga tcagaatcgc cgctgcaacc gcggttgtca tgcgaaccag catcgagcgg
     1201 atcatcgagc aatgtttatt catcgagcaa cgtccagaaa gttgcgcagc agctgcttgc
     1261 cgccttccgt gagaacagac tccggatgaa actgcactcc gtaaacagga tgcgtgcggt
     1321 gctgcatcgc gtggacctcg gtgctgtcgt cgtcgctcca tgcggttatc tccagatcgg
     1381 acggaagcga atcccgatcc accgtcagcg aatgatatcg catgacccgt agcggatcgg
     1441 gaaggccggc gaaaaggccg gagccgttgt gccggacctc cgacgtcttg ccatgcatca
     1501 gtctgttcgc gcgaaccacg cggccgccgt acgcggcacc gatcgcctgc tgtccaaggc
     1561 atacaccaag tatcggaatc gatgatccgt aagttcgaat cacgtccaga gtaatgccgg
     1621 cctcggctgg tgtcctgggg cctggcgaca atactatcgc tgccggacca agcgctccca
     1681 cctccgcggc cggaatctcg tcgttgcgcc gcacgatcac ctccgcgcca agctcaccca
     1741 gatactggac gagattgtag gtgaaggaat cgtagttgtc gattacaaga atcatttgtg
     1801 tgtcacatcc gaaagccgct cgcgcggatg gaactgcttg tgaacggagc gcagatactc
     1861 ccggtcgacg tgcgtgtata tctgcgtcgt cgagatgtcg gcatggccga gcatctcctg
     1921 caccgctcgc aaatccgcgc cgccttcgag aagatgcgtc gcgaacgaat gacgcaaggt
     1981 atgcggtgtg acatgcttcg tgataccact cgcatcgacg tgcttgcgca gtatcttcca
     2041 cgcgcccatg cgtgtcatcg gctcgccacg cgcgttgagg aagagaattc cctcacccga
     2101 tcccttctcc agcttcggtc gcagctcgcg cagatagatc gcgacggcac ccacggcctt
     2161 ccgtccgatc ggaaccagcc gttccttggc gcccttgccg aaaacgcgca ccagcgactc
     2221 gtcgagcatg agatcgcgca caccgagcgt gatccactcg cccacccgaa ggccggcgcc
     2281 gtacgccagc tcgagcatcg cgcggtcgcg gaaggccatc ggctcatcga gcgtcggcgt
     2341 ctctatcagc ttcgcgacct cttccgcgct caacacgtcg ggcagctcgc gccagcgctt
     2401 gggcgtttcc aggcgctcgc tcggatcgcg caccacgtgc ccttcgttga ggaggaa
//
LOCUS       DATIMD010000334         8044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2437241, whole genome shotgun sequence.
ACCESSION   DATIMD010000334 DATIMD010000000
VERSION     DATIMD010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8044
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2437241"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..875
                     /locus_tag="VLI40_07435"
     CDS             <1..875
                     /locus_tag="VLI40_07435"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSU97044.1"
                     /translation="TPLVQSRRIGALNVHAIQAGGQRLDGGAMFGVVPKPLWERRIPA
                     DERNRIQLGMRCLLIEHPSGLVLIDSGAGNKENAKFHDIYGVENAGANGRTALEDGLA
                     QVGISPEQIAFLISTHLHFDHAGGNTFVDEAGAVRPTFPRARYFVQRGEYEFATHPNE
                     RTAASYFDRNYVPTLESGQLELLEGESEIVDGIGVILTPGHTPYHQSIVIRSAGETAI
                     FLGDVVPTHAHLPLPWIMGYDVEPLVTLESKRGLLKRVEQEDWTVIFEHDAIVPWGRV
                     QFDGKAYSLRQEPA"
     gene            1060..1581
                     /gene="infC"
                     /locus_tag="VLI40_07440"
     CDS             1060..1581
                     /gene="infC"
                     /locus_tag="VLI40_07440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HSU97045.1"
                     /translation="MLIPPDVKGPRVNRQIRFSPLRVIGDDGAQLGIMDVDTALSRAQ
                     ELGLDLVEVAPLARPPVVRIMDFGKYKFEQAKMARQAKKKQHVIELKEVKFRPGIEEH
                     DFQTKVRHAREFLGEGNKVKVTLMFRGRQIAHPELGRKVVIRVAQELVDVSKIEADPK
                     FEGKSMTMILAPK"
     gene            1591..1788
                     /gene="rpmI"
                     /locus_tag="VLI40_07445"
     CDS             1591..1788
                     /gene="rpmI"
                     /locus_tag="VLI40_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HSU97046.1"
                     /translation="MPKMKTHKGAKKRFSVTGSGKVRRNKANKSHILTKKSAKRKRNL
                     RRPGTIATSGDEKRMKRLLVA"
     gene            1941..2306
                     /gene="rplT"
                     /locus_tag="VLI40_07450"
     CDS             1941..2306
                     /gene="rplT"
                     /locus_tag="VLI40_07450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HSU97047.1"
                     /translation="MPRVRSNVARLKRKKQVMKAARGAFGARSKLWKSAKENVERGWK
                     YAYRDRKNKKREFRKLWIVRINAAAHIHDMSYSTFINGLGKAGIEIDRKVLADIAVRD
                     AAAFGALAEQARKALSAAA"
     gene            2413..3453
                     /gene="pheS"
                     /locus_tag="VLI40_07455"
     CDS             2413..3453
                     /gene="pheS"
                     /locus_tag="VLI40_07455"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HSU97048.1"
                     /translation="MPATTLNDFQSSAADLERTASAAFAAADSADALEKARTEFIGRS
                     SGRLLELQRLVPTFEGADRGVAGRAFNELKKGLEEKLEARRTELESGARASAPQIDLT
                     MPARRQFRGAEHPVTVVIEEIVEIFREIGFTVATGPEAETEWYNFTALNFPPDHPAMD
                     MHDTMYLAEDVVLRTHTSPVQIRALQAGPPPVRVVIPGNAYRLDPFDASHAPMFAQIE
                     GLAVDEGISFVDLKATLTHFATRFFGATRTRFRPSYFPFTEPSAEMDVECRLCKGAGC
                     AACKGTGWMEILGSGMVHPNVLDAAGVDSEKYTGWAFGMGPARIALQRYGIPDIRVLY
                     DSDVRFLEQVAR"
     gene            3450..5831
                     /gene="pheT"
                     /locus_tag="VLI40_07460"
     CDS             3450..5831
                     /gene="pheT"
                     /locus_tag="VLI40_07460"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HSU97049.1"
                     /translation="MNASYDWLREFTDFDLTPDQLRDVITNRAATVEDVISLRADLRD
                     VVVGLVVEAKPHPDSDHLWVTRVDAGTGELLDVVCGAPNVQAGSKYPFAPSGSTLPGG
                     LKLERRKIRGETSNGMLCSARELALGTEHDGILTLHTDAAPGTPFLDAFPAGDTRFVV
                     DVLPNRPDLLSHEGLAREISAYTGNDLHMPEHPGMSLGPAFEHGRSDGVTGGVHVSID
                     EPSACPLYIATVIRKVRIEPSPEWLANRLIGIGLRPINNVVDATNYMLHGFGQPMHAF
                     DLDRLQGPEIRVRKAHSGERITTLDGVERKLDPTMTVIADAERAQAIAGVIGGSDSAV
                     SDGTTNILLEVAVFDPRSVRSTRRALGTSTDASYRFERALDAHASAELARYAAALIVS
                     LAGGRVDGAPVAVGSPGPSPRPLSLRVSRVATLLGERVSAPECMRLLGSVGFGVNSGE
                     NEVLRVTPPRWRSDVTLEVDLIEEVARLRGYDSFSDELRPFRVGTAPESPAYVVTRRV
                     TRALVEAGMMEVRPIPFVADAGEHGVRVLNPLAESEALLRSSALQTLARRVEHNFAHM
                     TRNVRLFEVGVVFSRGPDNRIPAERTVAAAVIAGDRNPAHFTDPRPAQMDIWDAKWIA
                     ETIIRAAFGPSGPVLQPNAARDGWDVIHDGSAIGTVGPIALDAPVWAPPVFGIEIDVT
                     AAFGIVREHVAYRALPITPAAEFDLALLVPAEVAAADVARVIQTNSGEMLESLVPFDE
                     FRGAGVGDGYRSIAWRLTFRHPERTLRDKEIEGRRARILRALKEELGVRPRTT"
     gene            5809..6102
                     /locus_tag="VLI40_07465"
     CDS             5809..6102
                     /locus_tag="VLI40_07465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97050.1"
                     /translation="MSDHALPENPQFAQLGRLVRRLGEELASYRKRALSAEARLRTVE
                     DEAARVAGTSPQRVLELERENAELNRRLTVARARTEKMLARVRFLKQQRDGAA"
     gene            6099..6398
                     /locus_tag="VLI40_07470"
     CDS             6099..6398
                     /locus_tag="VLI40_07470"
                     /inference="COORDINATES: protein motif:HMM:NF017016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HSU97051.1"
                     /translation="MTRGKTTTVRVTILGDDYTLRSATSAEETQAIAKQVDQSIREIM
                     QSGLVVETHKAAILACLRMAGELAQAQAESADLASQMNALSQEIRPWLPPAKRYD"
     gene            6408..7997
                     /gene="rny"
                     /locus_tag="VLI40_07475"
     CDS             6408..7997
                     /gene="rny"
                     /locus_tag="VLI40_07475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HSU97052.1"
                     /translation="MDFTAILAAGAILVLVAGCGLFFVIGRKAGTRVEAERQQAAGAS
                     AEQTAKRIISDAERDAQSLRKTAVLEGKEELIRLREEWEAEARKRREDVEGDERRLQE
                     RTGTIERKADALEQRERDIKRTASEITARENKLGERQAELDKLIAEERRRLETLAGMS
                     AADAKNELIKRLEEEAHADAANRVRVIREESRRNAEREAKKIIALAIQRIAAEQTVET
                     TVSTVALPNDEMKGRIIGREGRNIRAFELATGVDVIIDDTPDTVVVSCFEPMRREVAR
                     MALEKLVADGRIHPGRIEEVVTKAREEVDKALIETGERAAYESGVHGLHPELLKLIGR
                     MKWRTSYGQNILNHSKEVAWLAGIMAAELGLDVPMARRGALLHDVGKVLTHEHEGTHV
                     QLGVEMATKYGEHPLVVNAIAAHHDDVPHESEISVLVQAADAISGARPGARRESFETY
                     VKRLEGIEKIASAYRGVEKVFAIQAGREVRVIVTPETIDDPRMEAMAEEIAGRIEREL
                     QYPGQIKVVLIRETRAVGVAR"
BASE COUNT         1605 a         2472 c         2581 g         1386 t
ORIGIN      
        1 ccacgccact cgtacaatcg cgtcgcatcg gcgccctgaa cgtccacgcg atacaggcag
       61 gtggacagcg actcgacggt ggcgcgatgt tcggcgtcgt gcccaagccg ctgtgggagc
      121 gtcgcatccc cgccgacgag cgcaaccgca tccagctcgg catgcgctgc ctgctcatcg
      181 agcatccgag cggtctcgtt ctcatcgaca gcggtgcagg gaacaaggag aacgcgaagt
      241 tccacgacat ctatggcgtc gagaacgccg gcgcaaacgg tcgtacggca ctcgaagatg
      301 gactcgcaca ggtcggcata agccccgagc agatagcgtt cctgatcagc acgcatctcc
      361 acttcgatca cgccggcggc aacactttcg tcgatgaggc cggcgccgtg cgccccacct
      421 ttccgcgcgc ccgctacttc gtgcagcgtg gcgagtacga attcgcgacc catccaaacg
      481 agcgcaccgc ggcgagttac ttcgaccgca actacgttcc gacgctcgaa tcgggtcagc
      541 tcgagctgct ggaaggcgaa tcggagatag tcgatggcat cggcgtaatc ctgactcctg
      601 gccacacgcc ataccatcag agcatagtca tccgctccgc tggtgagacg gcgatctttc
      661 tgggcgatgt ggtgccgacc catgcccatc tgccacttcc gtggatcatg ggatacgatg
      721 tcgagccgct ggtgacgctg gagtccaagc gcggacttct caagcgggtg gagcaggagg
      781 attggaccgt tatcttcgag cacgacgcga ttgtgccgtg gggtcgggtg caatttgacg
      841 gaaaggccta cagcttgcgt caggagcccg cttagggtaa ctttccaggc ttagtttaat
      901 gcggaaagtg gttgcctagc ggcgacccac cctccggccc cggcgttgcc gaggtgctgt
      961 aggcgtcctg aatcaatcac accgtgaccg ccacggtgag tttgacgcgg actcctacgt
     1021 gggaggcccg cgttttttgt tttctctcta atcgaggttt tgctcatccc cccagacgtc
     1081 aaaggtccgc gcgtcaatcg tcagatccgt ttctcgcctc ttcgtgtcat aggcgacgac
     1141 ggcgcccagc ttggaataat ggatgttgat acggcattga gcagagcgca ggagctcggt
     1201 ctcgatctcg tcgaagtcgc accacttgct cgccctccgg tcgtccgaat catggacttc
     1261 gggaagtaca agttcgagca ggccaagatg gctcgccagg ccaagaaaaa gcagcatgtg
     1321 atcgagctca aggaagtcaa attccgcccg ggcatcgaag agcatgactt ccagaccaag
     1381 gtccggcacg cgcgtgaatt tttgggtgaa gggaacaagg tgaaggtcac cttgatgttt
     1441 cgcgggcgtc agattgcgca ccccgagctg ggaaggaagg tcgtgattcg cgtcgctcag
     1501 gagctggtcg acgtgagcaa gatcgaagca gatccgaagt tcgagggaaa atccatgacg
     1561 atgattctgg cccccaagtg agggaatagc atgccgaaga tgaagacaca caagggcgca
     1621 aaaaagcgct tctctgtaac aggtagcggc aaggttcggc gcaacaaggc caacaagagc
     1681 cacatcctca ccaagaaatc cgccaagcgg aagcgcaacc tgcgccgccc cggtaccatc
     1741 gcgacatcgg gcgacgaaaa gcgcatgaag aggctgttag tcgcctagtt ggtagcacgc
     1801 gtagggcgcg gattcatccg cgcctggccc ggtcgatcgc aatcgaaccc tgtggttcgt
     1861 cccattcggc ccggcgaata ccgaatcgca ttttttgttc aatccgcgac ccagtcgccc
     1921 attatagaga ggaatagccc atgccccggg tacgatccaa cgtcgcgcgt ctgaagcgca
     1981 aaaagcaggt aatgaaggca gcgcgcggtg cgttcggcgc gcgtagcaaa ctctggaaat
     2041 ccgccaagga aaacgtcgag cgcggctgga agtacgcata ccgcgatcgc aagaacaaaa
     2101 agcgcgagtt ccgcaagctc tggatcgtcc gcatcaatgc agcggcccac atccacgaca
     2161 tgagctacag caccttcatc aacggactcg gcaaggccgg catcgagatc gatcgcaagg
     2221 tcctcgctga tatcgccgtg cgcgacgcag ccgcctttgg agcgctcgcc gagcaggccc
     2281 gcaaggcgct gagcgccgcc gcgtagggaa cgtcaacggt tcaccggcat cgcgccggat
     2341 gatgcgctga cggggcggcc tcgataattt acgagtccgc ccctttcatt tgtaagacca
     2401 tcaatcgcaa aagtgccagc aacgacgctt aacgacttcc agtcatctgc tgccgacctc
     2461 gaacgcactg catcggctgc attcgccgcc gccgactcgg ccgatgcact ggaaaaggcg
     2521 cgcacggaat tcataggccg atccagcggg cgcctgctcg agctgcaacg tctcgttccc
     2581 acgttcgagg gtgccgaccg cggtgtcgcc ggccgcgcct tcaacgagct gaagaaaggc
     2641 cttgaggaaa aactcgaagc gcgccgcacc gagctcgaat ccggcgcgcg cgccagcgct
     2701 ccccagatcg atctcaccat gccggcacgc cgccagttcc gcggcgccga gcatccggtc
     2761 accgtcgtca tcgaagagat cgtcgagata ttccgcgaga tcggattcac agtcgcgact
     2821 ggcccggaag ccgagaccga gtggtacaac ttcaccgcgc tcaacttccc gccggatcac
     2881 ccggcgatgg acatgcacga caccatgtat ctcgccgagg acgtggtgct gcgcacgcac
     2941 acatcacccg ttcagatacg ggcactgcag gccggtcctc cgcccgttcg tgtagtgatc
     3001 cccggcaatg cgtatcgcct cgatccgttc gacgcgagtc acgcaccgat gttcgcgcag
     3061 atcgaggggc ttgccgtcga tgaaggaatc agcttcgtcg atctcaaggc gacgctcacg
     3121 cattttgcca cgcgattctt cggtgcgacg cgcacccgct tcaggccgag ctactttcca
     3181 ttcacggagc cgtccgcgga gatggacgtc gagtgccgtc tctgcaaggg cgcaggttgt
     3241 gccgcatgca agggaaccgg ctggatggaa atcctcggct ccggaatggt gcatccaaac
     3301 gtgctggatg cggccggcgt cgacagcgag aaatacacag gctgggcgtt cggcatgggg
     3361 cccgcgcgca tcgcgcttca gcgatatggc attccggaca ttcgcgttct gtatgactcg
     3421 gacgtgcgct tcctcgagca ggtggctcga tgaacgcatc gtacgactgg ctgcgcgagt
     3481 tcaccgattt cgatctcacg cccgaccagc tgcgcgatgt gatcaccaat cgcgcggcga
     3541 cggtggagga tgtgatttcg ttgcgtgcag acctccgcga cgttgtcgtc ggcctcgtgg
     3601 tcgaagccaa accacatccg gattcggatc acctctgggt taccagagtc gacgccggta
     3661 cgggcgagct gctggacgtc gtgtgtggtg cgccgaatgt tcaggccggc tcgaaatatc
     3721 cctttgcacc atctggatcg acgctgcccg gcggtctcaa gctcgagcgc cgcaagatac
     3781 gtggcgagac ttcaaacgga atgctgtgct ccgcacgtga gctcgcgctc ggcaccgagc
     3841 acgacggcat cctgacgctg cacaccgacg ctgcgccggg cactccgttt ctcgatgcct
     3901 ttccagccgg cgacacacgc ttcgtcgtgg acgtgcttcc caatcgtccc gatctgctct
     3961 cgcacgaagg tcttgcacgc gagatctccg cctacacagg caacgacctg cacatgccgg
     4021 aacatccggg catgtcgctc ggtcccgcat tcgagcacgg tcgcagcgac ggagttacag
     4081 gaggcgttca tgtctctatc gatgagccat cggcgtgtcc cctttacata gcgacggtga
     4141 ttcgcaaagt caggatcgag cccagccccg aatggcttgc gaatcgcctg atcggcattg
     4201 ggctgcggcc gatcaacaac gtagtcgacg cgaccaatta catgttgcat gggttcggtc
     4261 aaccgatgca tgcgttcgac ctcgatcgct tgcagggtcc ggagatccgc gtgcgcaagg
     4321 cgcacagcgg cgagcgcatc acgactctgg acggggtcga gcgcaagctc gatccaacaa
     4381 tgacggtgat cgctgacgcc gagcgtgcgc aggcgattgc aggcgtgatt ggcggtagcg
     4441 acagtgctgt gtccgatggc acgacgaaca ttctgctcga ggtcgcggtg ttcgatccgc
     4501 gctcggtccg gtcgacacgt cgcgcgctcg gcacatcgac cgacgcgagc tatcgcttcg
     4561 agcgggcgct cgatgcacat gcgtccgccg agcttgcgcg ctatgctgca gcgctgatcg
     4621 tgtcactcgc cggcggacgt gtggacggcg ccccggtcgc ggttggctcg ccagggccgt
     4681 cgccgcgtcc gttgtcgctc cgcgtatcac gtgttgcaac gctgctcggc gagcgcgtca
     4741 gcgcgccgga gtgcatgcgc ctgctcggca gcgtcggctt cggcgtcaac tccggcgaga
     4801 acgaagtgtt gcgcgtcacg ccgccacgct ggcgctccga cgtcacgctc gaagtcgatc
     4861 tgatcgagga agtcgcgcga ctgcggggct acgattcgtt ctccgacgag ttgcgcccgt
     4921 tcagggtcgg cacggcgccg gagtcaccgg cgtacgtcgt cacgcgccgc gtgacgcgtg
     4981 cgctcgtcga ggccggcatg atggaagtgc gccccattcc attcgttgcg gatgcgggcg
     5041 agcatggtgt gcgagtgctc aatccgctcg cagagagcga ggcgttgctc cgatccagcg
     5101 cgctccagac actcgcgcgg cgcgtcgagc acaacttcgc gcacatgacg cgcaatgttc
     5161 gcctgttcga ggtcggcgtc gtcttcagtc gtggtccgga caatcggatt ccggccgagc
     5221 gcaccgtcgc cgcagcagta atcgcgggcg atcgtaaccc ggcgcatttc accgatccga
     5281 ggccggctca gatggacatc tgggacgcga agtggatcgc ggagacgatc atccgtgcag
     5341 ccttcggccc gtccggtccg gtgttgcagc cgaatgccgc gcgggacggc tgggatgtca
     5401 tccacgacgg atcggcgatc gggaccgtcg gaccaatcgc actcgacgcg ccggtatggg
     5461 cgccgcccgt cttcgggatc gagatcgacg tcacggctgc gttcggtatc gtacgagagc
     5521 acgttgcata ccgcgcgctt cccatcacac cggccgcaga attcgacctg gcgctgctgg
     5581 taccggcgga agtcgcggcc gcggacgtcg cccgcgtcat tcaaaccaac tccggcgaga
     5641 tgctggaatc gctcgttccg ttcgatgaat ttcgaggcgc gggcgtgggc gacggatacc
     5701 gtagtattgc ctggcgcttg acgttcaggc atccagagcg caccctacgc gacaaggaaa
     5761 tcgaaggccg ccgcgcgcga atcctgcgcg ccctcaaaga ggagctcggt gtcagaccac
     5821 gcactacctg agaatccgca gtttgcccag cttggacgcc tcgtgcgccg cctgggcgag
     5881 gagctggcga gctatcgcaa gcgcgcgttg agcgccgagg ctcggctccg tacggtcgaa
     5941 gacgaggctg cccgagttgc cggaacgtcg cctcagcgtg tactggagct ggagcgcgaa
     6001 aacgcggagc tcaatcgccg gctcacggtg gcgcgtgcgc ggaccgagaa gatgctggca
     6061 cgtgtccgct ttctcaaaca acaacgggac ggggcggcat gaccagagga aaaaccacga
     6121 ccgttcgcgt cacgatactg ggtgacgatt atactctgcg atccgcgacc tcggccgaag
     6181 aaacccaggc gatcgccaaa caggtggacc agtcgatccg tgagataatg cagtcgggcc
     6241 tggtcgtgga gacgcacaag gccgcgattc tggcctgcct gcgtatggcc ggcgagctgg
     6301 cccaggccca ggcagagtct gccgatctcg cctcacagat gaacgccctc agtcaggaga
     6361 tccggccgtg gctgccaccg gccaagcgtt acgattagct tctaaagatg gacttcacgg
     6421 ctattttggc cgcgggcgcg attcttgtgc tggtcgccgg ctgcggcctt tttttcgtca
     6481 tagggcgtaa agctggtacg agagtggagg cggaacggca gcaggccgcc ggcgcctctg
     6541 ccgaacaaac agcgaagcgc atcataagcg atgctgagcg cgacgctcaa tcgcttcgca
     6601 agaccgccgt actggaaggg aaggaagagc tcatccggct ccgcgaggag tgggaggccg
     6661 aagcacgcaa gcgtcgcgag gatgtggaag gcgacgagcg acgactgcag gagcgcaccg
     6721 gcaccatcga gcgcaaggca gacgcactgg agcaacgtga gcgcgacatc aagcgcacgg
     6781 catccgaaat tacggcgcgc gagaacaagc ttggcgagcg acaggcggaa ctggacaagc
     6841 tcatcgcgga agagcgccgt cgtctcgaaa cactcgccgg catgtctgcg gcggatgcca
     6901 agaacgagct gatcaagcgg ctggaagaag aagctcatgc cgacgcagca aatcgcgtgc
     6961 gcgtcattcg cgaggaatcc cgccgcaacg ccgagcgcga ggcgaaaaag atcatcgcac
     7021 tggcgattca gcggatcgcc gccgagcaga ccgtcgagac taccgtttcg acagtggcgc
     7081 ttccgaatga cgagatgaag ggacggatca tcggtcgcga aggaagaaac atccgcgcct
     7141 tcgagcttgc gaccggggtg gacgtgatca tcgatgacac gcctgatacg gttgtggtaa
     7201 gctgtttcga gccgatgcgg cgtgaggttg cacgcatggc gctggaaaag ctggtggcgg
     7261 atggacggat ccatcccggg cgtatcgagg aagtggtaac gaaggcacgc gaggaagtcg
     7321 acaaggcgtt gatcgagacc ggcgagcgcg ccgcatacga gagcggggtg catgggttgc
     7381 atccggagct gctcaagctc atcggccgca tgaagtggcg cacgagttac gggcagaaca
     7441 tcctgaacca ttccaaggaa gtcgcctggc tcgccggaat catggctgcg gagctgggac
     7501 tcgacgttcc gatggcgcgc cgcggcgcgc tgttgcacga cgtgggcaag gtgctcacgc
     7561 acgagcacga ggggacgcac gtacagctgg gcgtcgagat ggcgacgaag tacggcgagc
     7621 acccgctcgt cgtgaacgcg atcgcggccc accacgacga cgttccgcac gagagcgaga
     7681 tatcggtact cgtgcaggct gccgacgcga taagcggagc gcgacccggt gcccgccgtg
     7741 aatcattcga gacatacgtg aagcgactag aagggatcga gaagatcgcg tccgcgtatc
     7801 gcggcgtcga gaaggtcttc gcgatccagg ccgggcgaga agtgcgcgtg atcgtcacgc
     7861 ccgagacgat cgacgatccg aggatggaag cgatggccga ggagattgcc gggcgcatcg
     7921 agcgcgagct gcagtacccg ggccagatca aggtcgtgct cattcgagag acgagggccg
     7981 tgggcgttgc ccgctgatct gatcgacgga gcggcggtcg cggcgcgtgt acgcgccgaa
     8041 gtcg
//
LOCUS       DATIMD010000335         2087 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2727382, whole genome shotgun sequence.
ACCESSION   DATIMD010000335 DATIMD010000000
VERSION     DATIMD010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2727382"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            331..1461
                     /locus_tag="VLI40_07480"
     CDS             331..1461
                     /locus_tag="VLI40_07480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97053.1"
                     /translation="MAELTSAAPEAESGSTEPTEPSIEFPLNWLLDHAAPPIQYRAFV
                     DVARLPQDPRLETLPLASPYAIKIAVTQSLDGTWSDRMLTLPKGKDGIQGLGTIPAVE
                     RLLEYGWHRDSPPLAQARRPLFRLLAEDTDPHYLYELRASAKVPDIALRGRQILREAS
                     SAALAHAGYEADPRLRGSARRAMERIDAYLDSALAEKPWVRIGNRHVLAENASPPSIY
                     ALMMVAHMPIFRSEHYPEMERLYAYLSQPKPTQEAVQMYGKEIVTQPHLVMGDLLHNK
                     NVVDADIPFALTWLEIMARLGFLKRNETWLKLFERFVDDCGRDRVWRPHNKGTSGPTT
                     TNPYAWPKFPLETNLEGDGRWTDVTFRIGLIARLLGWQIKLV"
     gene            1440..>2087
                     /locus_tag="VLI40_07485"
     CDS             1440..>2087
                     /locus_tag="VLI40_07485"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSU97054.1"
                     /translation="MADQAGLIPGRIPPERIFPAGDSRFTTSYHTLPLKTGATTIRVI
                     ETGDATAEHVVVCVHGWACSVYSFRRLMPILADLGMRAVAIDLPGHGLSDKPDDARLY
                     TIDAQVECVLAAMSSLGISRATLVGHSMGGPICARAAVLAPDRVIALALLAPAGFGTE
                     WELRILRSITPRIIAPALPRLLHRWMIAAVFRAVYGNLYRPTARDVDEYWAPSQFP"
BASE COUNT          396 a          655 c          631 g          405 t
ORIGIN      
        1 cggctatcgt gccctggtat caggatttta cactcgggcc gccggcgtac ggcgcggcgc
       61 aagtgagggc ccagatcaag gccggttacg acaacggctt ctacagctgg atcctctgga
      121 atcccggcag caagtatcac acggatgccc tggaggcgca gtagcgctaa acctgtaagt
      181 cgttgtaact aaagaacata gcatgctacc ccctggcatt tgccgtaaaa ggcgctataa
      241 ttgccgcgcg ggacgcatat gggcgctaac cggccggaac gtttgaggcg cggatgcatc
      301 tgcccctcaa accccaattc gtgagcgcgt atggccgagc tgacgtccgc tgcaccggaa
      361 gctgaatccg gttcgactga accaaccgag ccgtcgatag agtttccact caattggctt
      421 ctcgaccacg ccgcgccgcc gatccagtat cgcgcgttcg tcgacgttgc acgactccca
      481 caagatccca ggctcgaaac tctcccgctt gcatcgccct acgcgatcaa gatcgcggtt
      541 acgcaatcgc tcgacggaac gtggagtgac cgcatgctca cgcttccaaa gggcaaggat
      601 ggaatccagg gcctcggcac cattccggcg gtcgagcgcc tgctggaata cggatggcac
      661 cgcgattctc cacctctggc gcaggctcgc cgaccactct ttcgtcttct ggctgaagac
      721 accgatccgc actatctgta cgagctgcgt gcgagtgcga aggtgcccga catagcgctg
      781 cgtggtcgtc aaatcctgcg tgaggcatcg tcagcggcac ttgcgcacgc tggttacgaa
      841 gcggatccgc gacttcgcgg atctgcacgt cgcgcaatgg agcgcatcga cgcctacctc
      901 gactcggcgc tcgccgaaaa gccgtgggtg cgaatcggca acagacacgt gctcgcggag
      961 aatgcatcac cgccgtcgat ctatgcgctg atgatggtcg cgcacatgcc catcttccga
     1021 agcgagcact atccggagat ggagcggctc tacgcgtacc tgtcgcagcc caagccgacg
     1081 caggaagcgg tgcagatgta cggcaaggag atcgtcacgc agccgcatct tgtgatgggc
     1141 gatctgctgc acaacaagaa cgtcgtcgac gccgacattc cgttcgcgct cacgtggctc
     1201 gagatcatgg cgcgactcgg cttcctcaag cgcaacgaaa cgtggctcaa gctgttcgag
     1261 cgcttcgtgg atgactgcgg acgcgatcgc gtgtggcggc cgcacaacaa ggggacgtcg
     1321 gggccgacca ccaccaatcc gtacgcgtgg cccaagtttc cgctcgaaac aaatctggag
     1381 ggagatgggc gttggaccga cgtgacgttc cggatcggtc tcatcgcgcg gcttctgggt
     1441 tggcagatca agctggtctg attcccggga gaatcccgcc ggagcgaata tttccggcgg
     1501 gcgattcacg cttcaccact tcatatcaca cgcttccgct caaaacgggg gcgacgacga
     1561 ttcgcgtcat cgagaccggc gatgcgaccg ccgagcacgt tgtcgtgtgc gtgcacggat
     1621 gggcctgctc cgtatactca tttcgccggt tgatgccaat attggcggat ctcggaatgc
     1681 gcgccgtcgc gatcgatctg cccgggcacg gcctttccga caagcctgat gatgcgcgtc
     1741 tctatacgat cgacgcgcag gtcgaatgtg ttctggcggc aatgagttca ctcggaatct
     1801 cgcgcgcgac acttgttggt cattcgatgg gtggccccat ctgcgcacgc gccgccgttc
     1861 tcgcgccgga tcgcgtgatc gctctggcgc tgctcgcgcc ggccggcttc ggcactgagt
     1921 gggagctcag aattctacgc tcgatcactc cacggattat cgccccggcc ttgccccggc
     1981 tattgcaccg ctggatgatt gccgccgtgt tccgggcggt gtacggcaat ctgtatcggc
     2041 cgacggctcg ggacgtcgac gagtactggg cgccgagtca gtttcca
//
LOCUS       DATIMD010000336         4100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2727587, whole genome shotgun sequence.
ACCESSION   DATIMD010000336 DATIMD010000000
VERSION     DATIMD010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4100
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2727587"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VLI40_07490"
     CDS             <1..326
                     /locus_tag="VLI40_07490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97055.1"
                     /translation="DRDDRPFAATLADLFAAVDRVLRQAKRPLVHDVIPRALDVDGAM
                     KSIRAVMALRARARWGDIVSRDAEPWQILSVLLALLELAKSGELRIVQPKPFASMELS
                     GDTVS"
     gene            310..855
                     /gene="scpB"
                     /locus_tag="VLI40_07495"
     CDS             310..855
                     /gene="scpB"
                     /locus_tag="VLI40_07495"
                     /inference="COORDINATES: protein motif:HMM:NF016005.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HSU97056.1"
                     /translation="MTPLARLLEAALFASARPIPSDTLGQLDPEATPAAVSSALDEIR
                     ERYDNEGHGVELVAVSDGWQILTRPEYTEAIERAQLAARPQRLSGAALETLAIVAYRQ
                     PIGRMEIEDIRGVGAGAILKSLQERGLVDVVGRGEGMGRPLLYGTTPLFLEHFALRHL
                     GELPRADELTVALRPALSQAS"
     gene            855..1619
                     /locus_tag="VLI40_07500"
     CDS             855..1619
                     /locus_tag="VLI40_07500"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HSU97057.1"
                     /translation="MAEAMRLQRALARAGIASRRKAEELITAGRVTVNGAVATLGQVV
                     DPAGDKILVDGRRVGAPPATVWLLLNKPPGVVTTASDPAGRKTVFDLVEDRPGLTYVG
                     RLDYLTEGALLMTTDGAAAHALTHPSRGVERTYVATVRGDAVAAAREAMRGVELEDGV
                     AYPISATANPVPGRRHYEFEIVLAEGKHHEVRRLCAALGLEVERLVRTKFGPVRLGAL
                     PSGASRPLNKRESDLISSLVKQPPHGRHGARQRGNQ"
     gene            1582..2535
                     /locus_tag="VLI40_07505"
     CDS             1582..2535
                     /locus_tag="VLI40_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HSU97058.1"
                     /translation="MEDTALVNAVISEVGKRVVGQNYMIERLLVGLLTGGHVLLEGVP
                     GLAKTLTVRTLAETISTSFQRIQFTPDLLPADVIGTQVYDQSTGRFSVKQGPIFANIV
                     LADEINRAPAKVQAALLEAMQEKQVTIGGTTYVLEEPFLVLATQNPIEQEGTYPLPEA
                     QIDRFMLKLYVGYPTRDEEKEVLRRMAGKDEIPVRHVATPEAVLAARKRIGELYMDDR
                     IVDYIVDIVEATRNPKEANLPDLAPLIEFGASPRATLALAQGSRAIAFLHDRAYVTPD
                     DVKAIAPDVLRHRVLITYEAEAEDVTSDNVVSRILDTIPTP"
     gene            2540..3487
                     /locus_tag="VLI40_07510"
     CDS             2540..3487
                     /locus_tag="VLI40_07510"
                     /inference="COORDINATES: protein motif:HMM:NF017569.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSU97059.1"
                     /translation="MLNFLKRRAAPREAPAPRPVRISPEILKQVKRVELKTRGLVDAL
                     FSGEYRSVFKGQGMEFSEVREYIPGDEVRTIDWNVTARMNRPFVKRYIEERELTVVLA
                     LDISGSESFGTVSRFKSDVMTEFAAVIAMAAVRNNDRVGLIFFTDRVEHVVPPRKGKR
                     HVLRIVRDLLAFVPKGTGTNLRPALEYMQRTLRQHTVIFLVSDFQDEGYEHALKVLGR
                     RHDIVAVTLNDPAEQSLPSVGLARMRDPETGEFLEVDTSDRRVRAAYAEHIAAELAAR
                     RRVLRRSGVDEIELTTDGSVIEPLLKFFRTRETRARSYR"
     gene            3484..>4100
                     /locus_tag="VLI40_07515"
     CDS             3484..>4100
                     /locus_tag="VLI40_07515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97060.1"
                     /translation="MTTIVALFLLLFQTTTPAGSVQVGTAVRPETTTVGQHFVATVRV
                     RVPDGTRVIFPTRPDSGAHVDSAGATTRTESTAGGFTESTVNYVLAAWDTGGQSLGLD
                     SIVVIGPSGQRTVALRNFAVHVRSVLPADTSLRKPKPYRPVVAVTPFNWIPWAIAAAA
                     IALLGLLIWLWRRWRRRVARGLSPRQIAERDFARIDSQRLIESGES"
BASE COUNT          760 a         1206 c         1375 g          759 t
ORIGIN      
        1 tagaccgcga tgaccgtccg ttcgctgcca cgctcgccga tctgttcgcc gctgtggatc
       61 gtgtgctgcg tcaggcaaag cgcccgctgg tgcacgacgt gattccgcgc gcgctcgacg
      121 tggacggcgc gatgaaatcc atcagagccg tgatggctct gcgcgcgcgc gccagatggg
      181 gcgacatcgt gtctcgtgac gccgagccgt ggcagatact atccgtgctg ctcgcgctgc
      241 tggaactggc gaagagtggc gagctgcgaa tcgtgcagcc caaaccgttt gcatcgatgg
      301 agttgagtgg tgacaccgtt agctagactg ctggaggcgg cgctcttcgc gagcgcgcgc
      361 ccgattccat ccgataccct tggtcaactt gacccggaag cgactcccgc cgctgtatca
      421 tcggcgctgg atgaaattcg tgagcgctac gacaacgaag ggcatggcgt ggagctcgtc
      481 gcggtgagcg atggttggca gatactcacg cgtccggagt acaccgaggc tatcgagcgt
      541 gcacagctcg ccgcgcgtcc gcaacgactt tccggtgcgg cgctggagac gcttgcaata
      601 gtggcgtacc gccagccgat cggcagaatg gaaatcgagg acattcgcgg cgttggcgcc
      661 ggcgcgattc tcaaatcgtt gcaggagcgt ggcctcgtcg atgtcgtggg ccgcggtgag
      721 ggaatggggc gtccattgct gtatggcacg acgccgttgt ttctggagca cttcgcgttg
      781 cgccatctgg gcgagcttcc gcgcgccgat gagctgacgg tagcactccg tcccgccctg
      841 tcgcaggcgt cctgatggca gaggcgatgc gccttcagcg cgcacttgcg cgagcgggta
      901 tcgcatcacg acggaaggcc gaggagttga tcacagcggg tcgcgtgacg gtaaatggcg
      961 ctgtcgcgac gctcggccag gttgtggatc cggcgggaga caagatcctc gtcgacgggc
     1021 gccgggtagg cgcaccaccg gcaacggtct ggctgctgct caacaagcct cccggcgtgg
     1081 taacaactgc cagtgacccc gctggccgga aaactgtctt cgatctggtg gaggatcggc
     1141 ccggtcttac gtacgtcggc cgactggact atctgaccga aggtgctctt ctgatgacca
     1201 cggacggcgc ggccgcgcat gcgctgacgc atccgagtcg cggagtggaa cgaacttacg
     1261 tcgcaactgt acgcggagac gcggttgcgg cggcgcgtga agcgatgcgc ggtgtggagt
     1321 tggaagacgg cgtggcgtat ccgatatcgg cgacggccaa ccccgtaccg gggcggcgtc
     1381 actacgaatt cgagatcgtg ctcgcggagg gaaagcatca cgaagtgcgg cgtctgtgtg
     1441 ctgcacttgg attggaagtg gaacgactgg tgcgtacgaa gttcggaccg gtgcggctcg
     1501 gcgcactacc aagcggtgca agcaggccgc tgaacaagcg tgaatccgat ttaatcagct
     1561 cactcgtcaa acagccacca catggaagac acggcgctcg tcaacgcggt aatcagtgaa
     1621 gtaggtaagc gtgttgtagg ccagaattac atgatcgagc gactgctcgt gggattgctc
     1681 acgggcggcc atgtgctgct cgagggtgtg cccgggctgg ccaagacgct caccgtgcgc
     1741 acactagcgg agacgatcag cacctcgttt cagcgaattc agttcacccc tgatctgctg
     1801 ccggcggacg tcatcggcac tcaggtgtac gatcaatcga cggggcgttt ctcggtcaag
     1861 cagggaccga tcttcgcgaa catcgttctg gccgacgaga tcaatcgtgc gccggcgaag
     1921 gtgcaggccg cgttgctcga ggcgatgcag gagaagcagg tgacgattgg cggcacgacg
     1981 tacgtgctgg aagagccgtt tctggtgctc gcgacgcaga acccgatcga gcaggaagga
     2041 acgtatccac tgcccgaggc gcagatcgat cgcttcatgc tcaagctgta cgtcggttat
     2101 ccaacgcgcg acgaggaaaa ggaagtgctg cgtcgcatgg caggaaagga cgagatcccc
     2161 gtgcggcacg tggctactcc cgaggcggtg ctcgcggcgc gcaaacgcat cggcgagctg
     2221 tacatggatg accggattgt cgactacatc gtggacatag tcgaggcgac tcgaaatcca
     2281 aaggaagcca atctgcctga tctcgctccg ttgatagagt tcggtgcgag tccgcgcgcg
     2341 acgctcgctc tcgcacaggg ttcgcgcgca atcgcgttcc tgcatgatcg tgcgtacgtc
     2401 acaccggacg acgtcaaggc gatcgcgccg gacgtgcttc ggcaccgtgt tctcatcacg
     2461 tacgaggcgg aggctgagga tgtgacgagc gacaacgtcg tgtcgcgcat tctcgacacg
     2521 ataccaaccc cgtagcagcg tgctcaactt cctgaagcgt cgcgcagcgc ccagggaagc
     2581 gccggccccg cggccggtgc gtatctcgcc cgagattctc aagcaggtga aacgcgtcga
     2641 gctcaagacg cgcggacttg tcgatgcgtt gttctcgggc gagtatcgct ccgtattcaa
     2701 ggggcaggga atggagttct ccgaagtgcg cgaatacata cccggcgatg aggtgcgcac
     2761 gatcgactgg aacgtcaccg cgcgaatgaa ccggccgttc gtcaagcgtt acatcgagga
     2821 gcgcgagctg acggtggtgc tggcgctcga catctccggg tcggagagct ttggcaccgt
     2881 atcgcgcttc aagagcgacg tgatgacgga atttgccgcg gtcatagcga tggcggccgt
     2941 gcgcaacaac gatcgcgtgg gactgatctt cttcacggat cgcgtggagc acgtagtgcc
     3001 gcctcgcaag ggcaagcgac acgtgctgcg gatcgtgcgc gacctgctcg cgttcgtgcc
     3061 caagggcacc gggaccaatc tccgtcccgc actggagtac atgcagcgca cgttacggca
     3121 gcacacggtg atctttctgg tctccgactt tcaggacgag ggctacgagc acgcgctcaa
     3181 ggtgctgggt cgccggcacg acatcgtggc agtaacactg aacgaccctg ccgagcagag
     3241 cctcccgagt gttgggcttg cgcgcatgcg cgatcccgag accggcgaat ttcttgaagt
     3301 ggatacgagc gaccgcagag tccgtgctgc atatgcagag catattgccg cagagctggc
     3361 ggcgcgccgc cgagtgctgc gcaggtcggg agtggatgag atcgagctca ctacagacgg
     3421 gtcggtgatc gagccgctgc tcaaattctt tcgcacgcgt gagacgcgag cgcgctcgta
     3481 tcgatgacga cgatcgtagc gctctttctt ctgttgtttc agacgacgac tcccgctggc
     3541 tcagtgcagg tcggcacggc agtgcgaccc gaaaccacga cagtcgggca acacttcgtt
     3601 gcgaccgtgc gcgtgcgtgt accggatggc acgcgggtga tcttcccgac gcggccggac
     3661 agtggggcgc atgtggattc ggccggcgca acgactcgta cggagtcgac ggcgggcgga
     3721 ttcacggagt ccacggtcaa ttacgtgctc gctgcgtggg acacgggcgg ccagtcgctc
     3781 ggactcgaca gcatcgtcgt gattggcccg agcggtcaac gcacggtagc gctgagaaac
     3841 ttcgcggttc acgtccggtc ggtgcttccc gccgatacat cgctcaggaa gccaaagcct
     3901 tatcgccccg tggtcgcagt cacgccgttc aactggattc catgggcgat cgccgctgca
     3961 gcgattgcgc tcctcggtct cctgatctgg ttgtggcgtc gctggcgacg tcgcgttgca
     4021 cggggattgt ctccgcgcca gatcgcggag cgtgacttcg cgcgcatcga ttcgcagcgt
     4081 ctcatcgagt cgggtgaatc
//
LOCUS       DATIMD010000337         3519 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2438548, whole genome shotgun sequence.
ACCESSION   DATIMD010000337 DATIMD010000000
VERSION     DATIMD010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3519
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2438548"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..313
                     /locus_tag="VLI40_07520"
     CDS             <1..313
                     /locus_tag="VLI40_07520"
                     /inference="COORDINATES: protein motif:HMM:NF015419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97061.1"
                     /translation="VRPAILKMLGEKLIFPATRLVTLDEHISLTGDLTHYLRVVLTQR
                     DGVDHARLTGTQSSGALTSMLRANALLIVPEGRRECQPGEQLLAMPLRSSVFRSATFP
                     A"
     gene            338..1018
                     /locus_tag="VLI40_07525"
     CDS             338..1018
                     /locus_tag="VLI40_07525"
                     /inference="COORDINATES: protein motif:HMM:NF021788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSU97062.1"
                     /translation="MIHSLTGAELVADLERRFVTVNDDVRVGRRDINILRPRSAEDLI
                     SESDFDRDERLPYWAELWPSSTILANFVTSDKRPRGRAIELGAGVGLVSIAAALAGHE
                     ITASDYYEDALAFARANAFRNLGHEIETALIDWRDVSPDVPRFDFVLASDVLYESRYA
                     PLVAGVVDRLLSARGVAYIADPGRVAADAFADACVELGLVTRTSATRPYQAGEVRQTI
                     TVYEVARV"
     gene            complement(1060..3150)
                     /locus_tag="VLI40_07530"
     CDS             complement(1060..3150)
                     /locus_tag="VLI40_07530"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heterodisulfide reductase-related iron-sulfur
                     binding cluster"
                     /protein_id="HSU97063.1"
                     /translation="MTVGHGIFVVVVVLALAFFSYNAQRLVRYMLTVGGPDDRSGNPA
                     TRIRNLILIGFGQTKILRDPVAGALHASVFWGFVVLTIGTAEIIISGLFPGFSYAMIL
                     PAPVYALYTLSQELFAVLVLAAVAVLLYRRIIVKPARLQGDKVHSGDAILILSMIGAL
                     MVSLLTLGAFGFAMHPGTGTIFQPVSLALSHGLTGLPMWGLEAGRATSWWFHALLILI
                     FLNYLPYSKHLHVLTSLPNTYLANTSGPGVKGAMSYMNLEAEGVEQFGASDVTQLGWK
                     NLLDSYSCTECGRCTAVCPANITGKALSPRKIMINTRQRLMELAPLATGDFGEFEHPR
                     LAAGEGGDAGDTTVTAALQNTLLDNYITEEELWACTSCRACVQECPVSIDQLDIINEL
                     RRNLVLMESRFPPEIQPAFESMERNGSPWAFNPGDRAKWAEGMDIPTMAEMIERGERP
                     EVLFWVGCMGSFDDRAKKIAVAFARVLQAANVRFAILGQEEKCNGDPARRMGNEYLYQ
                     MLARDNIETLDRYGVETIVTNCPHCFHQIGNEYPQLGGNYEVIHHSTYIEKLLEEDRL
                     PLNGEGRQLTVAYHDSCYLGRYNDVYEAPRETLKRALPMMTLVEPPRTRSKGLCCGAG
                     GGRMWMEEDVGKRINAERTEELLATGADVLAVACPFCMTMIGDGVKGQDSSVPVYDIS
                     EVVAQQLTGKTQQH"
     gene            complement(3188..>3519)
                     /locus_tag="VLI40_07535"
     CDS             complement(3188..>3519)
                     /locus_tag="VLI40_07535"
                     /inference="COORDINATES: protein motif:HMM:NF012968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HSU97064.1"
                     /translation="NFHLVEELADAFGNAAVGATRVVTDEGWRPHSDQIGQTGRLVSP
                     QLYVAVGISGAIQHLAGMRTSRTIVAVNKDKEAPIFKVADYGIVGDLFEIVPALTAAV
                     REARARG"
BASE COUNT          670 a         1135 c         1028 g          686 t
ORIGIN      
        1 cgtccggccg gcgatcctca agatgctcgg cgagaaactg atctttccgg caacacggtt
       61 ggtgacgcta gacgagcaca tttcgctcac cggcgacctg acgcactacc tgcgcgtggt
      121 actcactcag cgggacggcg ttgatcacgc gcggctcaca ggcacacaga gctccggcgc
      181 gctgacatcg atgctgcgcg cgaacgcgct gttgatcgtt ccggagggtc ggcgcgaatg
      241 tcagccgggc gagcagctgt tggcgatgcc cctgcgcagt tccgtctttc gctccgcgac
      301 ttttccagcg tgacacatcc agcgtgatac atccagcgtg atacactcgc ttactggcgc
      361 cgagctcgtc gcagatctgg aacgccgctt cgtcaccgtc aacgacgatg tccgcgttgg
      421 tcggagagac atcaacatcc tgcgcccgcg cagcgccgag gacctgatca gtgaaagcga
      481 cttcgatcgg gatgaacggc tgccatactg ggccgagctc tggccgtcat ccacgatact
      541 ggcgaacttc gtcacttccg acaaaagacc gcgcggtcgt gccatcgaac tcggtgcggg
      601 cgtcgggctg gtgagcatcg cggcggcgct cgccggccac gaaatcaccg cgagcgatta
      661 ctacgaggat gcgctcgcct tcgcgcgcgc gaacgcgttt cgcaatctcg gccacgaaat
      721 cgaaacggcg ctcatcgact ggcgcgacgt gtcgccggat gtcccgcgct tcgacttcgt
      781 gctcgcctcc gacgtacttt acgaatcgcg ttacgcgccg ctcgtcgctg gcgtcgtcga
      841 ccgattgctg tcagcgcgag gtgttgcgta cattgccgac ccgggccgcg tggcggctga
      901 tgcttttgcg gatgcgtgcg tcgagctcgg acttgtgacg cgtacaagcg caactcggcc
      961 ctaccaggcc ggcgaggtgc gtcagacaat tacagtgtac gaggtcgcgc gagtttaata
     1021 cgtgctgcaa cgcgctacac tgtaacacgt tgtattacat cagtgttgct gcgtttttcc
     1081 agtcagctgc tgagccacga cttccgagat gtcgtacacc ggaacgctgg aatcctgacc
     1141 ctttacgccg tcgccgatca tcgtcatgca gaagggacag gccacggcga gcacgtccgc
     1201 gcccgtggcc agaagctctt cagtacgctc ggcgttgatg cgcttgccca cgtcctcttc
     1261 catccacatg cggccgccac cggcgccgca gcacagtccc ttgctgcgcg tacgcggcgg
     1321 ctcgacaagc gtcatcatgg ggagcgcgcg cttcagtgtc tcgcgcggag cctcgtacac
     1381 gtcgttgtag cgaccgaggt aacaggaatc gtgataggcg acggtcagct gcctgccctc
     1441 gccattgagc gggagccggt cctcctccag caacttctcg atgtacgtcg agtggtgaat
     1501 tacctcgtaa tttccaccga gctgcggata ttcattgccg atctggtgga agcagtgcgg
     1561 acagttggtc acgatcgtct cgacgccgta acggtcgagc gtctcgatgt tgtcccgcgc
     1621 cagcatctgg tacaggtatt cgttgcccat gcgacgcgcc ggatcgccat tgcacttttc
     1681 ttcctggccc agaattgcga agcgtacgtt cgccgcctgc agaactcgcg cgaacgcaac
     1741 cgcgatcttc ttcgcgcgat cgtcgaacga tcccatgcac ccgacccaga acagtacctc
     1801 cggacgctca ccacgctcga tcatctcggc catggtcgga atgtccattc cttccgccca
     1861 cttggcgcgg tcacccgggt tgaacgccca cggtgagcca ttgcgctcca ttgactcgaa
     1921 cgccggctgt atctcgggcg ggaaacgcga ctccatcagc acgagattcc gccgaagctc
     1981 gttgatgatg tcgagctgat ctatcgatac tggacattcc tgcacgcagg cacggcagct
     2041 ggtgcacgcc cagagctctt cttccgtgat gtagttgtcc agaagtgtgt tctgaagcgc
     2101 cgcggtgact gtcgtatcac ccgcgtcacc accctcgccg gccgcgagac gcggatgctc
     2161 gaactcgccg aagtcaccgg tcgcaagcgg cgcgagctcc atcagacgct ggcgcgtgtt
     2221 gatcatgatc ttgcgcgggc tcaacgcctt gccggtgatg ttggccggac atacggccgt
     2281 acagcgtccg cactcggtgc acgagtagct gtccagaagg ttcttccatc cgagctgcgt
     2341 cacgtccgac gcgccgaact gctccacacc ctccgcttcc agattcatgt agctcatcgc
     2401 gccctttaca ccgggtccac tcgtgttggc caggtatgtg ttcggaagcg acgtgagaac
     2461 atgaaggtgc ttggagtacg gcagataatt caggaagatc agtatcagca gcgcatgaaa
     2521 ccaccagctt gtggcgcggc cagcttccaa tccccacatc ggaagacccg tcaatccgtg
     2581 cgaaagcgcc agcgagaccg gttggaagat ggtgccggta cctggatgca tcgcgaaccc
     2641 gaacgcaccc agcgtcagca gactcaccat cagcgcgccg atcatcgaca gaatgaggat
     2701 cgcgtcgccg gagtgtacct tgtcgccctg gagtcgtgcc ggcttgacaa tgatgcgccg
     2761 gtacagcagc acagcaacag ctgcaagcac cagtaccgcg aacagctcct gcgagagcgt
     2821 gtaaagggcg tagacaggcg ccggcagaat catcgcatag ctgaagccgg gaaacagtcc
     2881 gctgatgatt atctcagcgg tgccgatcgt cagcacgaca aaaccccaga acaccgacgc
     2941 gtgcagcgca ccagccacgg ggtcgcgcag aatcttcgtc tgcccgaatc cgatcaggat
     3001 gagattgcga attctggtcg ctggattgcc gctgcgatcg tccggcccac ccacggtgag
     3061 catgtatcgc acgagccgct gcgcgttgta ggaaaagaac gccagcgcga gcaccaccac
     3121 gactacgaat atgccgtgtc cgacggtcat cgcgcgaatc tccgcagtgg gttcagcata
     3181 tcgcagctca ccctcgggcc ctggcctccc tgaccgcagc tgtgagtgcg ggtacgatct
     3241 cgaagaggtc accaactatt ccgtaatcgg cgaccttgaa gatcggtgct tccttgtcct
     3301 tgttgaccgc gacgatcgtc ctggaggtgc gcattccggc cagatgctgg atcgcgcctg
     3361 atattccgac cgcgacatac agctgcggac ttaccagtct cccagtctgc ccgatctgat
     3421 cgctatgcgg acgccatccc tcgtcggtga cgacgcgcgt cgcgccgacc gctgcgttgc
     3481 caaatgcgtc cgcaagctcc tccacgagat gaaagttct
//
LOCUS       DATIMD010000338         2000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2729311, whole genome shotgun sequence.
ACCESSION   DATIMD010000338 DATIMD010000000
VERSION     DATIMD010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2729311"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..317)
                     /locus_tag="VLI40_07540"
     CDS             complement(<1..317)
                     /locus_tag="VLI40_07540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97065.1"
                     /translation="MRTLLRVLLIFTLAVTPLSRAMAQGPSRVEVSLTTAVGGQRGAP
                     LVRSMNIFSDRDIREMLHSGFPARLHYRLELWGAAGFFDDLKRQIEWDVIVRYNPLKR
                     RYTV"
     gene            complement(319..>2000)
                     /locus_tag="VLI40_07545"
     CDS             complement(319..>2000)
                     /locus_tag="VLI40_07545"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HSU97066.1"
                     /translation="RDTTAGIASDTTADSLSYDDAAEIAYLFNAVAAVRNTGPTSIAA
                     GDSVAGNVAVLWGPLTIAGKVHGSVIVINGPVTIAPGGHVDQDLIVTGGTVAGADSTT
                     VGGVVQVHRDPLRFRQSGELIIAESPEGAEIPDANWFRHWLRRHVRQRHGFTLVGGPY
                     NRVEGLPIIGGPSIRQNIGIGTLRLSALGIYRSADHFEWKGDNLGWHASSELTLEGAH
                     NVRFGIEGYDVVTPAESWQLRDGEVSLASFFLHRDFRDYYNTKGAHAWVGAHAGRKFS
                     LELGVRRERWEPREARNPFTLFRNGSIWRPNPTLDDGRIWIGEALLRFDTRNNVGDPS
                     TGWLIDAALEGGGAGHLKEGTASFVARVPSDTSVRVRYTRLFADVRRYNRMSPQAQLN
                     FRLVVGAGFGDNSLPLERRFALGGAGTLPGYDFRAPFGGADVLSCNPGPAAIPGQPAL
                     CDRMLLGQIEYRHDSRIRLFGRRDPDGAQRFRVDRDVAFVVFADGGRGWISGPRFGEI
                     RYPSDAIPSLSTFKYDAGAGVDLHYVGFYLAKSLTDWSNGVNLLIRLRHRF"
BASE COUNT          363 a          681 c          640 g          316 t
ORIGIN      
        1 acggtgtagc ggcgcttgag tggattgtag cgcacgatca cgtcccactc gatctgtcgc
       61 ttgagatcgt cgaagaagcc cgccgcgccc cagagctcga gtcgataatg cagccgcgcg
      121 gggaatccgc tgtgcagcat ctcacggatg tcgcgatccg aaaagatgtt catgctgcgg
      181 acgagcggtg cgccgcgctg tccacccaca gcggtcgtga gactcacctc cacgcgcgac
      241 ggaccctgcg ccatcgctcg cgagagcggc gtcacggcca gcgtgaagat caggagcaca
      301 cggaggagtg ttcgcacgct agaagcgatg cctcaggcgt atgaggagat tcaccccatt
      361 gctccaatcc gtgagcgact tcgcgagata gaagccgacg tagtgcaggt cgacacccgc
      421 gcctgcgtcg tacttgaacg tgctcagcga ggggatcgca tcggagggat agcgaatctc
      481 tccgaaccgc ggtccggaaa tccatccgcg tccgccatcc gcgaacacga cgaacgccac
      541 atcgcgatcc acgcgaaacc gttgcgcacc gtccggatcg cgccggccga agagtcggat
      601 gcgcgagtcg tggcgatact cgatctggcc gagcagcatg cggtcgcaga gcgcgggctg
      661 gcccgggatc gccgccggcc ctgggttgca cgagagtacg tccgccccgc cgaacggtgc
      721 cctgaagtcg tagcccggca gcgtgcccgc gccgccaagg gcgaagcgac gctcgagcgg
      781 cagcgaattg tcgccgaacc cggccccgac aacgaggcgg aagttgagct gcgcctgcgg
      841 cgacatgcga ttgtagcggc gcacgtccgc gaagagccgt gtgtatcgca cgcgaacgga
      901 cgtatcgctc ggaacacgcg cgacgaacga agccgtccct tctttcagat gaccggcgcc
      961 gccaccctcc agcgcggcgt cgatcagcca accggtggac gggtcgccga cgttgttgcg
     1021 cgtatcgaaa cggaggagcg cctcaccgat ccagatccgt ccgtcatcga gcgtgggatt
     1081 gggacgccag atcgagccgt tgcggaacag cgtgaacgga ttgcgcgcct cgcgcggctc
     1141 ccatcgctcg cggcgcacgc ccagctcgag cgagaacttg cgcccggcgt gcgcgcccac
     1201 ccaggcgtgc gcgcccttcg tgttgtagta gtcgcggaaa tccctgtgca ggaaaaagct
     1261 cgcgagcgac acctcgccat cacgcagctg ccacgactcc gctggtgtca cgacatcgta
     1321 gccctcgatg ccgaagcgca cgttgtgcgc accctccaac gtcagctcgc tgctcgcgtg
     1381 ccatccgaga ttgtcgccct tccactcgaa atgatcggcc gagcggtaga tgccgagtgc
     1441 ggagaggcga agcgtgccga tcccgatgtt ctgccgaatc gatggtcctc cgatgatcgg
     1501 cagtccctcg acacgattgt acgggccgcc cacgagcgtg aagccatggc gctgccgtac
     1561 gtgacgccgc agccagtgcc tgaaccagtt cgcatcggga atctccgcgc cttccggaga
     1621 ctccgcgatg atgagctctc ccgattggcg gaagcgcagc ggatctctgt gcacctgcac
     1681 aaccccgccg accgtcgtgc tgtcggcgcc cgcaaccgtt ccacccgtga cgatcagatc
     1741 ctggtcgacg tgcccacccg gcgcgatcgt gaccggtcca ttgatgacga tgacgctgcc
     1801 gtgcaccttg cccgcaatcg tcagcggacc ccagagcacc gcgacgttac cggccaccga
     1861 atcgccggcg gcaatcgatg tcgggcccgt gttccgcacc gccgcgacgg cgttgaacag
     1921 gtacgcgatc tcggccgcgt cgtcgtacga cagcgaatcg gcggtggtgt ccgacgcgat
     1981 gcccgcggtg gtgtctctcg
//
LOCUS       DATIMD010000339         3748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_999073, whole genome shotgun sequence.
ACCESSION   DATIMD010000339 DATIMD010000000
VERSION     DATIMD010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3748
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_999073"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            505..1479
                     /locus_tag="VLI40_07550"
     CDS             505..1479
                     /locus_tag="VLI40_07550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSU97067.1"
                     /translation="MPHSVLVTGGAGFIGSHIVRRFIEHGSSVTILDDLSSGKLANLP
                     DGVTFVEDDIRSPSAARLVREGAFDVICHLAAQIDVRKSVEDPAYDVAVNIGGSLNLL
                     EAMRQSGRKTTRFIFSSTGGALYGDVETLPTPEDFPKDPQSPYGNAKLSVELYLGYYA
                     RVHGLDTVALRYGNVYGPRQDSHGEAGVVAIFCERVLAGRKLTVFGDGGQTRDYVYVA
                     DVAHANFLAATRPLPPAGPLDSRSFNIGTGIETTVLELAELIRDASGATPVIEHAPDR
                     AGEVRRSVLLASKAKRVLGWTPRMSIADGIGETFRWFADERDSVASTT"
     gene            1495..2391
                     /locus_tag="VLI40_07555"
     CDS             1495..2391
                     /locus_tag="VLI40_07555"
                     /inference="COORDINATES: protein motif:HMM:TIGR03006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XrtA system polysaccharide deacetylase"
                     /protein_id="HSU97068.1"
                     /translation="MATEHVFTVDVEDYFQVYAFEGVVDRAAWDGYPSRVARNTDVLL
                     DLLARHGAHGTFFTLGWVADKHPEIVRRIADAGHEIASHGWWHRKVTALTPAQFREDA
                     HASRAILEQVSGHPVVGYRAPSFSITPGHEWAFDALLEAGYRYDSSLFPINRSNYGYP
                     ATPPLPHLIHRRAGDLMEFPLTTTRFMGKRIPAAGGGYLRHFPYSIIRKAFTEKDRSG
                     IPGVFYIHPWEIDCEQPRMPVPWLTTVRHYRNIRKVLPRLDRLLGEFKFTSIAQRLAG
                     DGKWFRATAPLPEIPPQAVARR"
     gene            2388..3431
                     /locus_tag="VLI40_07560"
     CDS             2388..3431
                     /locus_tag="VLI40_07560"
                     /inference="COORDINATES: protein motif:HMM:TIGR03019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FemAB family XrtA/PEP-CTERM system-associated
                     protein"
                     /protein_id="HSU97069.1"
                     /translation="MTLRVERYAGPPERWDDFVRSQPGWTHFHLHGWRSVMLDAMGHD
                     TPYLVALDSSSDKIEGVLPLVRVKSALFGHFLVSVPFLNYGGPLGSPRAVAELAAHAA
                     EMATDDGAKVLELRSRHDIGAIPDFEVSHRKITVLLDSSGGSDALWKRLSSKLRSQIR
                     RPQKEGVTVRIGADLVKPFYRVFAHHMRDLGTPVMPRRFFDAVAREFGDEVLFAVAYH
                     DDKPIACGAGFTWGTGDDSEFEITWASALRAYNRMAPNMLVYWELMKHVADQGINTFN
                     FGRCTPGGNTHKFKTQWGTVDQPLWWYERRAEGAATPSEGHGAAARGPELWKRLPLPI
                     ANALGPRIIRFIP"
     gene            3438..>3748
                     /locus_tag="VLI40_07565"
     CDS             3438..>3748
                     /locus_tag="VLI40_07565"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HSU97070.1"
                     /translation="MAIRRQLPVASPLTAANILGATLATIARRDASEHVRNTLAAEFH
                     AKQVVLTDSGTSALVLALRMFAKPDAPVAMPAYVCVDLIAAARRAGVRVRLFDVDPHT
                     L"
BASE COUNT          725 a         1269 c         1070 g          684 t
ORIGIN      
        1 accgtcgaga aatcctcata cgcttacctc tctgataaag ttgaactact cgacggtgac
       61 cctaggagct ggatacagcg ccgcatcgcg cccgtcgaca ccctgcgact gcacccggtt
      121 tggcagattc catgcccccc catcgacgcg ccgagccaaa accaacactt tggcaccaaa
      181 aaaaggcgga tatgtgattt cgccccatga aaatgcatgc cattttgatc aaaccgtgac
      241 ggccaatctg ccctcattta ccagtaaaca gacggcgcca gaacgggcac ggaccaatct
      301 tctgttgcgc gcacccaaca cctgtaggat ggacctgaag cccgcacgac gcgcaaaggc
      361 ccgtgccacg gcgcgacccg atcgccgcgt atcggctccg gtatcgatgt tgcgaaccgg
      421 atatcccgcc gatacttcct atggcgtacc atgcgccgac gccaaaccgc ccggcaaatc
      481 catccagtcc gctactctta actcatgccc cattctgtac tcgtcaccgg cggagccggc
      541 ttcattggct cgcacatcgt gcgccgattc atcgagcacg gctcctcagt aacgatcctc
      601 gacgacctgt cgtccggcaa gctcgccaac ctccccgatg gtgtcacctt cgtcgaggac
      661 gacatcagat cgccctcagc cgcccgcctc gtccgcgaag gcgcgttcga cgtcatctgc
      721 cacctcgccg ctcagatcga cgtccggaag agcgtcgagg accccgccta tgacgtagcg
      781 gtgaacatcg ggggctcgct caacctgctc gaggcaatgc gccagagcgg caggaagacc
      841 actcgcttca tcttctcgtc caccggcggc gccctctacg gcgacgtcga gacgctgccc
      901 acgccggagg acttccccaa ggacccgcag tccccctatg gcaacgccaa gctttccgtg
      961 gaattgtacc tcggctacta tgcacgggtg cacggtctcg acactgtagc cctccgctac
     1021 ggcaacgttt atggcccgcg ccaggactcc catggcgagg ctggcgtcgt cgcgatcttc
     1081 tgcgagcgcg tcctcgcggg acggaagctg accgtattcg gcgacggcgg tcagacgcgc
     1141 gactatgtgt atgtcgcaga tgtcgcccat gccaactttc tcgccgcaac gcgaccgctg
     1201 ccgcctgcag gccctctcga ttcacggtcg ttcaacatcg gcaccggcat cgagacgacg
     1261 gtgctcgagc tcgccgagct cattcgtgat gcgtcgggtg ccacacctgt aatcgaacat
     1321 gcacccgatc gtgccggcga agttcgccgc tcggttctcc tggcttcaaa ggcgaagcga
     1381 gtgctcggat ggactccgcg catgtcaatt gcagacggta taggcgaaac gttcaggtgg
     1441 ttcgcagacg agcgggacag cgtcgcaagt accacatgat cgcctagggg aaacgtggca
     1501 accgaacacg tcttcacggt cgacgtcgaa gactacttcc aggtctacgc attcgagggc
     1561 gtagtcgatc gtgccgcgtg ggacggctat ccgtcacgcg ttgcgcgcaa caccgacgtg
     1621 cttctcgacc tgctcgcgcg tcacggcgcg cacggcacct tcttcacgct cggctgggtc
     1681 gccgacaagc accctgaaat agttcgcagg atcgccgacg ccggccacga gatcgcatcg
     1741 cacggttggt ggcaccgcaa ggtgaccgcg ctcactccag ctcagttccg cgaggacgcg
     1801 cacgcgtcgc gcgccatact cgaacaggtg agcggacatc cggtcgtagg gtaccgcgcg
     1861 ccaagctttt cgatcacgcc cggacacgag tgggcattcg acgcgctgct cgaagcaggc
     1921 taccggtacg attccagcct cttcccgatc aatcggtcga attacggcta tcccgcaact
     1981 cctccgctac cgcatctcat ccaccgccgc gctggcgatc tcatggaatt tccgctcact
     2041 actacccgct tcatgggtaa gcgcattcca gcggcgggcg gcggatatct gcggcacttc
     2101 ccgtacagca tcatccggaa ggccttcact gaaaaggacc gctccggaat tccgggcgtg
     2161 ttctacattc atccatggga gatcgactgc gagcagccac gcatgcctgt accatggctg
     2221 acaacagtcc ggcattaccg taacatcaga aaagtgcttc ccagactcga ccgcctgctc
     2281 ggcgaattca aattcacgtc catcgcccag cgactcgccg gcgacggcaa atggttccgc
     2341 gcgactgcac cgctccccga gattccaccg caagccgtag cgcgccgttg acgctgcgcg
     2401 tggagcgcta cgccggaccg ccagagcgct gggacgactt cgttcggtcc caacctggct
     2461 ggacacattt ccatctgcac ggctggcgga gcgtgatgct ggacgccatg ggtcacgaca
     2521 caccctatct cgtcgcgctg gacagctcgt ccgacaaaat tgagggtgtg cttccgctcg
     2581 tgcgagtgaa gagcgcgctg ttcggacatt ttctcgtatc ggtcccgttc ctcaactacg
     2641 gcggtccgct cggctcgcct cgcgctgtcg cagagctcgc ggcgcacgct gcggaaatgg
     2701 cgacggatga cggcgcgaag gttctcgagc tgcgcagccg ccatgatatc ggcgccattc
     2761 ctgattttga agtatcacat cgtaagatta ccgtgctgct ggacagcagc ggcggctccg
     2821 acgcactgtg gaaacgactg agctccaagc tgcgcagtca gatccgcagg ccgcagaagg
     2881 aaggcgtcac cgtgcgcatc ggtgcggacc tggtcaaacc gttctacagg gttttcgcgc
     2941 accacatgcg cgacctcggc actcccgtca tgccgcgcag gttcttcgat gcagtggcgc
     3001 gtgaattcgg tgacgaggta ttgttcgccg tcgcgtatca cgacgacaag ccgatcgcat
     3061 gcggtgccgg gttcacctgg ggcaccggcg acgatagtga attcgagatc acatgggcgt
     3121 ccgcactgcg tgcgtacaat cgcatggcgc cgaacatgct cgtgtactgg gagttgatga
     3181 aacacgtcgc ggatcagggc atcaacacgt tcaacttcgg ccgctgcacc cccggtggaa
     3241 acacccacaa gttcaagacc cagtggggca ccgtggacca gccactctgg tggtacgagc
     3301 gcagagccga aggagcagca acaccgtccg agggacacgg cgccgccgct cgcggacctg
     3361 aactatggaa gcgcctgccg ttgccgatcg cgaacgcgct cggcccgcgc ataatacgct
     3421 tcattccgta gcacgcgatg gccatccgcc ggcagctccc ggttgcatcg ccgctcaccg
     3481 ctgcgaacat cctcggcgcg acgctcgcca ccattgcgcg gcgtgacgcg agcgagcacg
     3541 tgcgcaacac actcgctgcg gaattccacg cgaagcaagt tgtacttacc gacagcggca
     3601 cctcggcgct cgtcctcgcg cttcgcatgt tcgcgaaacc tgatgcgcca gttgcgatgc
     3661 ccgcttacgt atgcgtcgat ctgatagcgg ctgcacgtag agccggcgtg cgcgttcggc
     3721 tcttcgacgt cgatccgcac acgctgag
//
LOCUS       DATIMD010000340         4908 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_999890, whole genome shotgun sequence.
ACCESSION   DATIMD010000340 DATIMD010000000
VERSION     DATIMD010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4908
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_999890"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..576)
                     /locus_tag="VLI40_07570"
     CDS             complement(<1..576)
                     /locus_tag="VLI40_07570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HSU97071.1"
                     /translation="MATTVIDTTPAHLKPFVPSPAPATVTHEKSTIWGWLTTTDHKKI
                     GTLYLFTALFFFLVGGLEAEIIRAQLGGPNRHLVSAETYNQIFTMHGTTMIFLAIMPL
                     SAAFFNFIIPLQIGARDVAFPRLNAFSYWVYLFGGLFISIPILFGHAPNGGWFGYAPL
                     TTKAYSPGVNIDFWVIGLQILGISSLAAGFNF"
     gene            complement(589..1902)
                     /gene="coxB"
                     /locus_tag="VLI40_07575"
     CDS             complement(589..1902)
                     /gene="coxB"
                     /locus_tag="VLI40_07575"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HSU97072.1"
                     /translation="MIGSHRLRRLAPLGVAAVLALALAACAQSYPNTTFTPHSDLGRS
                     IDFLWDRLMFLGTIVFVLVEGALIYVVFRYRRRNEDVTPPQTHGNVVLEITWTLIPAA
                     ILAFIAVPTVKTIFETQAPAPANSLVIEVYGHQWWWEFRYPQYKFTTANEIYIPKGRT
                     VDLVLRSQDVIHSFWVPQLAGKRDAIPNHTNHIWFTPDSNMATTVWNGFCTEYCGDSH
                     GEMHFRVVTVNPDQFASWVTRQQAPGFFSPAPPPPAPVPPAAPAALAEAAGKAAVTTT
                     PSTNAPATPAPTTPTATPAQLAAYILPRAEIPEYAIPHTPLPDAIKFDDRLKGDPAAG
                     EKLFVGAGTCNACHTVAGNPLAVGTIGPNLTHVGSRIAIAAGMYLNDKPHLSRWIKNA
                     RLMKSGVLMPTLGKGQYDPQTKATTPSGLSDQQVADLVAYLQALK"
     gene            complement(1992..3425)
                     /gene="aspA"
                     /locus_tag="VLI40_07580"
     CDS             complement(1992..3425)
                     /gene="aspA"
                     /locus_tag="VLI40_07580"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008797 - aspartate ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HSU97073.1"
                     /translation="MPQTPTHPTSSNQSSRIEHDLLGERSVPADALYGVQTLRALENF
                     PISGTYVGQFPTLVAALASVKEAAALANEELGLLDPKIARAIVGAAETLRRGEHGDQF
                     PVDMIQGGAGTSTNMNANEVIANLALESLGLPRGSYDVIHPNNHVNLSQSTNDVYPTA
                     VKLALHASITELQAAMGALAGAFLVKGEEFNSFIKMGRTQLQDAVPMTLGQEFSAFAH
                     TILEDVDRLGEAQKLILEINMGATAIGTGINAPEGYAEAVRRELSRVTGLTLITAPDL
                     VEATADTGVFVQLSGVLKRCAVKLSKICNDLRLLSSGPRAGFGEINLPAMQPGSSIMP
                     GKVNPVIPEVVNQVCFDVIGGDMTVTMAAEAGQLQLNVFEPVIAYRLLRGMSMLRNAC
                     DVLRTRCVTGVTANPERMRQFVEHSIGIVTALVPVIGYEAATDIARAALQSGRGVFEL
                     VLERGLMTREELDQLLNPEAMTKPKAR"
     gene            3505..>4908
                     /gene="leuS"
                     /locus_tag="VLI40_07585"
     CDS             3505..>4908
                     /gene="leuS"
                     /locus_tag="VLI40_07585"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HSU97074.1"
                     /translation="MESVDRQSETVSPYDPRAIEAKWRARWTERGTNVADIRGAERPY
                     YALMMFPYPSAEGLHVGNMFAFTGNDIFARYQRMQGLDVFEPLGYDAFGIHSENYALK
                     VGVHPAEMIPRNIANFRRQLENGGLMVDWTRSLSTTDPEYYRWTQWVFLQLYKQGLVY
                     RNAGAVNWCPTDKTVLANEQVIAGECERCGSKVEQRFLEQWFFAISRYADRLLKNLDT
                     LDWSETTKTAQRNWIGKSEGAEIWFDGIKVFTTRPDTIYGATYVVLAPEHPLVDAHTT
                     DAQRMAVNEYRDRASRRDLVSRKTTKDKTGVATGSTVTNPATGEQIPVWISDYVLMEY
                     GTGAIMAVPAHDERDLEFAHGFELPVRKVVHEDETLIDSGEFSGMTVHAAKHAIVKSL
                     EARGKAMPVTNYRLHDWCISRQRYWGPPIPIVYCDDCGVVAVPEKDLPVLLPLIDDFK
                     PDDSGISPLARHDEWYRV"
BASE COUNT          973 a         1407 c         1556 g          972 t
ORIGIN      
        1 gaagttgaag ccggccgcga gtgacgagat gccgaggatc tgcaagccga tcacccagaa
       61 atcgatgttt acccccggcg agtatgcctt cgtcgtcagc ggagcgtagc cgaaccagcc
      121 gccatttggt gcatggccga acaggatcgg gatgctgatg aagagaccgc cgaacagata
      181 gacccagtaa ctgaatgcgt tgagtctcgg gaatgcgacg tcgcgtgcgc cgatctgaag
      241 cggaatgatg aagttgaaga aggcggcact gagcggcatg atcgcaagaa agatcatggt
      301 cgtgccgtgc atcgtgaata tctgattata cgtctcggcg ctcaccagat ggcgattggg
      361 gccgccgagc tgcgcgcgaa tgatctcagc ctccagtccg ccgactagaa agaagaagag
      421 agcggtgaag aggtagagag taccgatctt cttgtgatcg gtcgtggtga gccagcccca
      481 gatcgtgctc ttttcgtgtg ttaccgtcgc cggtgccggc gaggggacga aaggcttgag
      541 gtgggcagga gtcgtgtcga tgacagtagt tgccatttgt cttcgcgcct acttgagtgc
      601 ttggaggtat gccacgaggt cagcaacctg ctgatcggac agtcccgacg gagtcgttgc
      661 cttcgtctgc gggtcgtact gacccttgcc gagcgtcggc atcagaacgc cggacttcat
      721 caagcgtgca ttcttgatcc agcgagagag atgcggcttg tcgttcagat acatgccagc
      781 cgcgatggca atgcgtgacc cgacgtgcgt aaggttgggt ccgatcgtgc cgaccgcgag
      841 tggattgcca gcaactgtgt gacacgcatt gcacgttcca gctccgacga aaagcttctc
      901 gccagcggcc ggatcgccct tgagccggtc gtcgaacttg atcgcgtccg gcagtggcgt
      961 gtgcggaatt gcgtactcgg gaatttctgc gcgcggaagg atataggcag cgagctgagc
     1021 cggagtcgcg gtcggtgtcg tgggtgcagg cgttgcgggc gcgttggtcg atggagtcgt
     1081 cgttaccgcc gccttgccag ccgcttcagc cagtgccgct ggcgcagcgg gcggtaccgg
     1141 cgccggtgga ggcggggcgg ggctgaagaa gcccggcgcc tgctggcgtg taacccagct
     1201 cgcgaactgg tccggattga cggtcaccac acggaagtgc atctcgccgt gcgagtcacc
     1261 gcagtactcg gtacagaagc cattccacac cgtcgtcgcc atgttgctgt cgggcgtgaa
     1321 ccagatgtgg ttggtgtgat tggggatcgc gtcgcgcttg cctgcgagct gcggaaccca
     1381 gaacgagtgg atgacatcct gcgagcgaag caccagatcc accgtgcgcc ccttggggat
     1441 gtatatctcg ttcgctgtgg tgaacttgta ctgcggatag cggaattccc accaccactg
     1501 gtgaccgtaa acttcgatca ccaacgagtt tgccggcgcc ggtgcctgag tctcgaagat
     1561 cgtcttgacc gtcggcaccg cgatgaacgc gagaatcgcc gccggaatga gagtccatgt
     1621 aatctcgagg accacgttgc cgtgagtttg cggcggtgtc acatcttcgt tgcggcggcg
     1681 gtagcggaac actacgtaga tcaacgcccc ttcgacgaga acgaagacta tcgttccaag
     1741 gaacatcaga cgatcccaca ggaagtcgat cgagcgaccg agatccgagt ggggcgtgaa
     1801 cgtggtattg gggtagcttt gagcgcaggc cgcgagcgcc aacgcgagca ccgctgccac
     1861 tccgagcggg gcgagccggc gcaggcgatg agagcctatc atgatagtgg gttgagggtg
     1921 gatctgttca gcagtggtaa gatagggagt attgccggga cgggctaccc gcgcagcctc
     1981 cgaaaaatcg cttaccgcgc cttgggtttc gtcattgctt ccggattgag cagctggtcc
     2041 agctcctcac gcgtcatgag accacgctcg agaacgagct cgaagacacc acgccctgac
     2101 tgtagcgcgg cgcgagcgat atccgtcgca gcctcgtatc cgatcacagg taccagcgcg
     2161 gtcacgatcc cgatcgagtg ttcaacaaac tgccgcatgc gctcgggatt cgctgtgacg
     2221 cctgtcacac atcgtgtgcg caacacatcg cacgcattgc gcagcatcga catgccgcgc
     2281 aacagccgat atgcgatgac aggctcgaaa acattcagct gaagctgccc ggcttcggcc
     2341 gccatcgtca cagtcatgtc gcccccgatc acgtcgaagc agacctgatt caccacttcc
     2401 gggatcacgg ggttgacctt tccaggcatg atcgacgagc ccggctgcat cgccggtaga
     2461 ttgatctctc cgaaaccggc acgcggtccg gatgacaaca gtcgcaagtc gttacagatt
     2521 ttggaaagct ttacagcaca acgttttagc acacccgaga gctgaacgaa aacacctgta
     2581 tcggcggtcg cttcgaccag atccggcgcg gttatcaacg tcagccccgt caccctcgac
     2641 aactctctcc gcacagcctc ggcgtaccct tcgggtgcgt tgatcccggt gccgatcgcc
     2701 gtcgcgccca tgttgatctc gagaatcagc ttctgcgcct cacccagccg gtcgacgtcc
     2761 tcgaggatcg tgtgcgcgaa ggcgctgaat tcctggccga gcgtcatcgg gactgcatcc
     2821 tgaagctgag tgcggcccat cttgatgaac gagttgaatt cctcgccctt caccaggaat
     2881 gcgccagcca gtgcgcccat cgctgcctgc agctcggtga tgcttgcgtg cagtgccagc
     2941 ttcacggcgg tcggataaac gtcgttggtc gactggctca gattgacgtg attgttcgga
     3001 tggatcacgt cgtacgagcc gcgtggaaga cccagcgact ccagagcgag attggcgatc
     3061 acctcgttcg cattcatgtt ggtggaggtt ccggcgccgc cctgaatcat gtccaccggg
     3121 aactggtcgc cgtgctcgcc gcggcgaagc gtttccgctg cacccacgat ggctcgcgcg
     3181 atttttggat cgagcaggcc cagctcctcg ttggccagcg ccgcggcctc cttgaccgag
     3241 gcaagcgccg ccacgagggt cggaaactgg ccgacgtagg tgccggaaat ggggaaattc
     3301 tccagtgcgc ggagcgtctg cacgccgtac agggcgtctg ctggtacgct gcgttctccg
     3361 agtagatcgt gctcgatccg gctcgactga ttggatgacg tcgggtgtgt gggtgtttgc
     3421 ggcatcggca aaagctacgc acacgggacc ctttttggga cttctgccgg ctgcaaggct
     3481 atgcagcacc cttattttga gtggatggaa tcagtcgatc gtcaatccga aaccgtttcg
     3541 ccttacgatc cacgcgcgat agaggccaag tggcgcgcgc gttggaccga gcgcggcacc
     3601 aatgtcgccg acatacgcgg cgccgagcgt ccatactatg cgttgatgat gttcccgtat
     3661 ccgtcagccg aagggctgca cgtcggaaac atgttcgcgt ttacgggaaa tgacatcttc
     3721 gcgcgatatc agcggatgca gggactcgac gtgttcgagc ccctgggcta cgacgcgttc
     3781 gggattcact ccgagaatta cgcgctcaag gtcggtgtac atccggcgga gatgattccg
     3841 cgcaacatcg ccaacttccg gcgccagctg gagaatggcg gcttgatggt ggactggacg
     3901 cggtcgctct cgactacgga tccggaatat tatcgctgga cgcagtgggt atttctgcag
     3961 ctgtacaagc agggactcgt gtacaggaac gccggcgccg tcaactggtg tccgaccgac
     4021 aagaccgtgc tggccaacga gcaggtcatc gctggtgaat gcgagcgttg cggcagcaag
     4081 gtggagcagc gcttcctgga gcagtggttc ttcgcgatct cgcgttacgc agatcgtctt
     4141 ttgaagaatc tcgatacgct cgactggtcg gagacaacca agaccgcgca gcgtaactgg
     4201 attggaaagt cggaaggcgc cgagatctgg ttcgatggca tcaaggtctt caccacgcgg
     4261 ccggacacga tctacggtgc gacgtacgtc gtgctcgcgc cggagcatcc gctggtcgac
     4321 gcgcatacaa ccgacgcgca gcgcatggcg gtgaacgagt atcgcgatcg cgcgtcgcgt
     4381 cgcgacctcg tttcacgcaa gacgacaaag gacaagaccg gcgttgcgac tggcagcacg
     4441 gtaaccaatc cagccaccgg tgagcagatc cccgtctgga tttccgatta cgtgctgatg
     4501 gaatacggca ccggcgcgat aatggccgtg cctgcacacg atgagcgtga tctcgaattt
     4561 gcgcacgggt tcgagctgcc ggtcaggaaa gtcgtgcacg aagacgagac gctgatcgat
     4621 tcgggcgagt tcagtggcat gacggtgcac gcggcaaagc acgcgatcgt caaatcgctc
     4681 gaggccagag gcaaggcgat gcccgttacg aattatcgcc tgcacgactg gtgcatctcg
     4741 cggcagcgct attggggtcc gccgattccg atcgtctatt gcgatgattg tggcgtggta
     4801 gcagtacccg agaaggatct cccggtgttg ttgccgttga tcgacgattt caagccggat
     4861 gattcgggta tctcaccact cgcgcgccac gacgagtggt atcgggtg
//
LOCUS       DATIMD010000341         9244 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3022235, whole genome shotgun sequence.
ACCESSION   DATIMD010000341 DATIMD010000000
VERSION     DATIMD010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9244
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3022235"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /locus_tag="VLI40_07590"
     CDS             complement(<1..564)
                     /locus_tag="VLI40_07590"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HSU97075.1"
                     /translation="MQSIAPAAAALLVSALGAPVGGQTPLPFAPGETITYRVNVSGVG
                     TIGRATMSVEGPVDVRGTPTYLLRSQTRAGMGPFKGSQLMESWLDPVMVRSLRFHEHE
                     RRFFRSRNVVTEISPNDRSWADDDGASGESITSASLDELSFIYYLRTLPAGKDTLYEF
                     SSHFDATRNPVTVRESSGGVVQTSSRAY"
     gene            complement(570..1916)
                     /locus_tag="VLI40_07595"
     CDS             complement(570..1916)
                     /locus_tag="VLI40_07595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97076.1"
                     /translation="MKPFLFSSIGAAAIIAIVPTLSAQDVAPAARTGDSTVNAALVPL
                     IEIQHMRPRDQRGINVFEPPKEDTVPFTNFKIGLGAAFTQQFQGLEHSNTAAPKVVNG
                     VNANQLIQIGHGFNNAVANLYLNAQLARGMRVEVTTFLSSRHHQDAWVKDGYLLVDAS
                     PIDVDVLNSIMKYLTLRVGHFEVDYGDAHYRRTDNGLAMYNPFVGNYIMDAFTTEIGG
                     EAYVRANGFLAMAGVTGGEVHGQVTQPQKRSPTFLGKIGYDSQINPDFRFRLTGSVYG
                     TSRSVNNTLYSGDRAGSRYYDVMENTASTEDANAWSGAIQPKLSSKVTAVVVNPFIKY
                     QGFEFFGNAEMAKGRGATESVDRTWHQYVGEGLYRFLDDKLYVGGRYNYVKGSFLGFP
                     TDVNVDRTQVGGGWFVTPTVLLKSEYMVQNYNDFPITDIRNGGKIKGFMVEGTVSF"
     gene            complement(1972..2667)
                     /locus_tag="VLI40_07600"
     CDS             complement(1972..2667)
                     /locus_tag="VLI40_07600"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSU97077.1"
                     /translation="MITRTVLTAAAIALLGTTLSAQTSAVRLQLAPGSQLTFDGTSTL
                     HGFTCTTSTMQAYIDVDPSYQTASLNTIAHPIVNVQVVIPVRSLKCGGELDNNMYKTL
                     NATQFPYVIYKLTSYDLVTETATASKFSATTHGALTIAGKDNPIQMTIDAARGSDGVV
                     SATSEQAIKMSAFGIKPPTFMLGTLRVGDQLKVKFTLKATQAAVASAMSELSSELALT
                     TPAVTQLRAEPRK"
     gene            2896..3900
                     /locus_tag="VLI40_07605"
     CDS             2896..3900
                     /locus_tag="VLI40_07605"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HSU97078.1"
                     /translation="MSSFAFSATATPSEEFYGIARRGLRPALDAVFPLLLAITDDERA
                     APAIRMTRQLARTHGAIPTVLRALGTDRETDVLVEPFAGYVAAGALSPEYRDESRERL
                     QQQVADMAGDVRWHFEVADESPVEAIVGQARQLRAELIVIGLRRHGVVHRVVVGNLLR
                     SVVRLAGVPVLAVRPDLVALPKRVVVAVDFGEASVRAASMARHILADDGEMHLVHVVT
                     DSMHEDSRPATLTGAGTFTRALRDLASLADDLRAAPGMTITSHVIEGERHAAIDGFAE
                     RVRADLLAVGSDEHPLFDRIVNRSVSMTLARTARRSMLVVPARRRTHNPTANDGYSAT
                     "
     gene            3921..4895
                     /locus_tag="VLI40_07610"
     CDS             3921..4895
                     /locus_tag="VLI40_07610"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016208 - AMP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HSU97079.1"
                     /translation="MSITGKDYIDALDALIEAPSAVREAFAGSGEFGVLLGLTDDKLA
                     DSAVAVTRALQERRSANPSALYVIEVGTSVPEAAIVIVSIEEDLQDPRIRDRQTFEMR
                     RTLHLDRGPAAAWPLSLAVGNVARAVVENAERSAARMIVLGLNRHGTAGRVMGRDTVG
                     GVMRISSVPVLAVRPELADLPKRIVVPVDFSRASIRAANLARRIIDEHGTMHLLFIEP
                     SRPPARTESEEAFELIHTRGVETAFSQLVAELWPSVGVTIDTVVRRGSPVAEITRFAQ
                     ECDADLIAIGSQRHPFLDRLLIGSVTKAITTDARWSVLVTPPELASRR"
     gene            complement(4944..5906)
                     /locus_tag="VLI40_07615"
     CDS             complement(4944..5906)
                     /locus_tag="VLI40_07615"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSU97080.1"
                     /translation="MTSSVDHTPASNRLASEVEPGVFLLDHHFRGSPGVIASYLVTDD
                     GALTLIETGPASTQETLLAGIRQAGFDPEDIERVVVTHIHLDHAGGAGSLLRVLPRAR
                     LYVHPVGAPHMIDPAKLMASATRIYGDLMGPLWGEMIPVPEDRLSVLGDRADLHTGSR
                     TLRAYDTPGHANHHLALHDPDTGSVFTGDVAGVRLDGTGHLRPPTPPPEFSPEKWQKS
                     IATLRTLEPRRLYLTHFGGYDDVAWHLDELLSRTWFWAGWVGGRLATGEEADATSDAL
                     RAMEDVTLARTGDPSLLRRYEEAGNYRMSVDGIARWWRKRGAQP"
     gene            complement(5917..7158)
                     /locus_tag="VLI40_07620"
     CDS             complement(5917..7158)
                     /locus_tag="VLI40_07620"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HSU97081.1"
                     /translation="MKILVLNAGSSSLKFQLIETDQSAIDGNSDRRLASGQIERIGGE
                     AILTLAAGSATPSHSTTQIRNHRDAVERVITWMADPASGVEITAASDIEAVGHRVVHG
                     GERFTQSVLIDTAVRSDLEQLIDIAPLHNPHNLAGIAAAREVLGENVPQVAVFDTAFH
                     QTIPETAHLYAIPYQLYRRYRVRRYGFHGTSHRYIAYRYRQLTGKTRDETRIITLHLG
                     NGASACAIVAGHSIDTSMGFTPLEGLVMGTRSGDIDPAILDYVGAKEGLTSRDMDMML
                     NKQSGLLGLSGLTADMRELLAEDSENGDRRARLAIDVFCYRVRKYIGAYLAAMNGADA
                     IIFSGGIGENSPAVRERVCAGMDWLGIQADGGLNAALTGGAEGRFDHDGARIQLWVIP
                     TDEELLIARDTWRVVTGKEPH"
     gene            complement(7155..>9244)
                     /locus_tag="VLI40_07625"
     CDS             complement(7155..>9244)
                     /locus_tag="VLI40_07625"
                     /inference="COORDINATES: protein motif:HMM:NF003619.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoketolase family protein"
                     /protein_id="HSU97082.1"
                     /translation="GTYSEIYPRVSRDTAGLQHLFKQFSIPGGIPSHDAPETPGSIHE
                     GGELGYSLLHAYGAVFDNPDLFVCCAIGDGEAETGALATSWHSNKFLNPARDGAVVPI
                     LHLNGYKIAGPTVLARIGDDELTSLLRGYGYDPHFVSGDDTHVMHQLMAATMDTVLTD
                     IKRIQHDAREHGFTHREPWPMIVLRSPKGWTGPKFVDGKQTEGSFRSHQVPITGFADN
                     PGHVALLEQWMKSYRPEELFDENGALMPEIAHIAPTGTHRMSANPHANGGLLLKDLAM
                     PAFRDYAVSVPAPGTVDAESTRVLGNFLRDVMQLNMSASNFRVMGPDETSSNRLDALF
                     EVTDRTSTAEILPSDDHVAPDGRVMEVLSEHMCEGWLEGYLLTGRHGLFSCYEAFIHI
                     VDSMFNQHAKWLATARNIPWRRPIASLNYLLTSHVWRQDHNGNSHQDPGFLDHVVNKK
                     ADVVRVYLPPDANTLLSVADHCLRSRNYVNVIVAGKQPEPQWLDIDAAAAHCGKGLGI
                     WHWASNDDGADPDVVLGCCGDVPTLEVLATVDLLHTHIPDLRMRVVNVVDLMALQPDS
                     EHPHGLPDVEFDAMFTRDRPVIFAFHGYPLLIHRLTYRRTNHDNMHVRGYKEEGTTTT
                     PFDMTVLNDMDRFHLALDVIARVPRLRNNAAASAAADIFRSKLIAHRAYVNEYGDDMP
                     EIRDWRWSGHTAP"
BASE COUNT         1729 a         2699 c         2884 g         1932 t
ORIGIN      
        1 atacgcacgc gatgacgtct gcacaacgcc gccggatgac tcacgtacgg tgaccggatt
       61 gcgggtcgca tcgaagtggc tgctgaattc gtaaagcgtg tccttgccgg ccggaagcgt
      121 gcgcagatag tagatgaacg aaagctcgtc cagcgaagcg ctggtgatac tctcgccgga
      181 ggcgccgtcg tcatcggccc aactgcgatc gttcggggaa atttccgtta cgacgttgcg
      241 agaacgaaag aaacggcgct cgtgctcatg gaatcggagt gagcgaacca tcacgggatc
      301 cagccacgat tccatcagct gagatccctt gaacgggccc attccagctc tcgtttgaga
      361 ccgcagcagg tacgtcggtg ttccgcgcac gtccaccggc ccctcgactg acatggttgc
      421 gcggccgatc gtaccgacgc cactgacatt cacccggtat gtgattgtct cacccggagc
      481 gaatggcagt ggcgtctgac cgccaaccgg cgcgccgagc gcagaaacca acagcgcagc
      541 ggcggccggg gcgatcgatt gcaactggtt cagaacgata ccgttccttc caccatgaaa
      601 cccttgatct tgccaccgtt ccggatgtca gtgatgggga agtcgttgta gttctgcacc
      661 atgtactcgc tcttcagcag aaccgtcgga gtgacgaacc agccgccgcc gacctgtgtc
      721 cgatcgacgt tcacgtcagt ggggaatccc agaaagcttc ccttgacgta gttgtatcgt
      781 ccgccgacat acagcttgtc atccaggaag cgatacagac cctcgccgac gtactggtgc
      841 caggtacggt ctaccgactc cgtggcgcct cgtccctttg ccatctcggc gttaccgaag
      901 aactcgaacc cctgatactt gatgaacggg ttgacgacga ccgcagtgac cttgctgctc
      961 agcttgggct gaatcgcgcc cgaccacgca tttgcatctt cggtggaagc ggtattctcc
     1021 atcacgtcgt agtaccggga tcccgcgcgg tcaccgctgt acagggtgtt gttcacggag
     1081 cgcgatgtac cgtagaccga gccggtcaat ctgaagcgga aatcgggatt gatctggctg
     1141 tcgtaaccga tcttgcccag gaatgttggc gaacgcttct gtggctgggt aacctggccg
     1201 tggacctcgc caccggtaac tcccgccatc gcgaggaatc cgtttgcgcg gacatacgcc
     1261 tcgccaccga tctcggtggt gaacgcgtcc attatgtagt ttccgacaaa gggattgtac
     1321 atggccagcc cattgtctgt tctgcgatag tgcgcatcgc cgtaatccac ctcgaagtgc
     1381 ccgactctca atgtcaggta cttcatgatg gaattgagga cgtccacatc gatgggtgat
     1441 gcatcgacaa gcagatagcc gtcctttacc cacgcatcct ggtggtggcg ggacgacaga
     1501 aaggttgtaa cctccacacg catgcctctt gcgagctgcg cgttgagata gaggtttgcg
     1561 accgcgttat tgaagccgtg ccctatctgg atgagctggt tggcgttcac gccgttcacc
     1621 accttgggtg ccgcggtatt gctgtgctcg agcccctgga actgctgcgt gaaagcagca
     1681 ccgagtccga tcttgaaatt ggtgaagggg accgtgtctt ccttcggtgg ctcgaatacg
     1741 ttgatgccgc gctgatcgcg cgggcgcatg tgctggatct cgatgagcgg aacgagtgcc
     1801 gcgttcacgg tgctgtcgcc ggtgcgagca gccggtgcga cgtcctgcgc cgacagcgtt
     1861 gggacaatcg cgatgatcgc tgcggcgcct atcgaactga acaggaacgg tttcattttc
     1921 tgtctccgtt gggagtgaga ttgacttttc aacctgcgta ctacttgcgt gctacttgcg
     1981 tggctcggct cggagctgag tcaccgcggg cgtggtcagg gcgagctccg atgagagttc
     2041 tgacatcgcg cttgcaaccg ccgcctgtgt cgccttcaag gtgaacttca ccttcaactg
     2101 atcgccaacg cgaagagtcc cgagcatgaa cgtcggcggc tttataccga aggcgctcat
     2161 cttgattgcc tgctcggaag tcgccgatac gacgccgtcg gatccgcgcg ctgcatcgat
     2221 ggtcatctgg atgggattgt ccttgccggc aatcgtgagc gctccatgtg ttgtggcgct
     2281 gaatttggat gccgtcgcag tctcggttac aaggtcgtag ctcgtgagct tgtagatcac
     2341 gtacgggaac tgcgttgcat tcagagtctt gtacatgttg ttatcgagtt cccctccgca
     2401 cttcagactc ctgactggaa tcaccacctg cacattcacg atgggatgcg cgatggtgtt
     2461 caggcttgcg gtttgatacg agggatctac gtcgatgtac gcctgcatgg tgctcgtcgt
     2521 gcaggtgaat ccgtgcagtg tggatgtgcc gtcgaaggta agttgactgc ccggagcaag
     2581 ctgcaggcgt acggcgctcg tctgagcgga taatgtggtg ccaagcagcg cgatggctgc
     2641 tgcggttagt acagtccgtg tgatcatggt tcgtccactc tggtgtgagt ttgtcctgtc
     2701 ttcacgagtg aacgttacga cccagagctg tctgcgtctg tcagcgctaa cctgaattgc
     2761 ggtaggggta atgctgatgc gccggtcgtc tccgccatcg ggtactggaa tgccctacaa
     2821 tcattccggg aacagccgac agacgccgga cgcacgcagc agcagattgc ggtatcaacc
     2881 acaggaggtg cacagatgtc cagtttcgct ttctccgcga ccgcgacgcc ctcagaggag
     2941 ttttacggta tcgctcgtcg cggattgcgg ccagcactcg atgctgtgtt tccgctactg
     3001 ctcgcaatta ccgatgatga gcgcgcggcg cctgccatca ggatgacgcg tcagctcgcg
     3061 cgcactcatg gtgcgattcc gacggtgctc cgagcgctcg gcaccgatcg cgagacggat
     3121 gtgctggtcg agccgtttgc gggttacgtc gcagcgggtg ctctgagccc ggaatatcgt
     3181 gacgaatcca gggagcggtt gcagcaacag gtagctgaca tggctggtga cgtgagatgg
     3241 cacttcgagg ttgcggatga atcacccgtg gaggcgatcg ttgggcaagc acggcagctg
     3301 cgcgcagagc tgattgtcat tggtctgcga cgacacggag tcgtgcatcg ggtggtcgtc
     3361 gggaacctgc tcagatccgt ggtgcgcctt gcaggcgtgc cggtgcttgc agttcggccg
     3421 gatctcgttg ctctcccaaa gcgcgtggta gtcgcggtcg acttcggtga ggcgagcgtg
     3481 cgtgcagcca gtatggcgcg acacattctt gcggacgacg gcgagatgca cctcgttcat
     3541 gtcgtgaccg actcgatgca tgaggacagc cgtccggcaa cgctgacggg tgctggcacc
     3601 tttacgcgcg cactgcgcga tctggcgtcg ctcgccgacg atctcagagc tgcaccgggc
     3661 atgacgatca cttcccacgt gatcgagggt gaacgacacg cagcgatcga cggcttcgcc
     3721 gagcgagttc gcgcggatct gctcgctgtt gggagtgatg aacatccact gttcgacagg
     3781 atcgtgaaca ggagcgtgtc gatgacgctc gcccggacgg cgcgtcggtc gatgctcgtg
     3841 gttcctgcca ggcgccgcac gcacaatccg acggccaatg acggatacag cgctacgtaa
     3901 acagcgtaac aggaggacca atgagtatca caggaaagga ttacatagac gcgcttgacg
     3961 cgctgatcga ggcgccatcc gcggtacgcg aggctttcgc gggctccgga gagtttggag
     4021 ttctcctggg gctgacagac gacaagcttg ccgattcagc ggtcgccgta acgcgggcac
     4081 ttcaggagcg gcgtagcgcc aatccttccg cactctacgt catcgaggtc ggcacgtcgg
     4141 tgcccgaagc ggcgatcgtc atcgtctcga tcgaggagga tctgcaggac ccgcgaatac
     4201 gtgatcggca gacgttcgag atgcggagga cactgcacct ggaccgtggt cctgcagcgg
     4261 cctggcccct ttcactcgca gtgggcaacg tagcgagagc cgtggtcgag aacgcggagc
     4321 gcagcgcggc acggatgatc gtgttgggac tgaaccgtca cggaacggct ggccgagtga
     4381 tgggcaggga tacggttggc ggcgtgatga ggatcagcag cgtgccggtg cttgctgtac
     4441 ggccggagct ggcggatctt ccaaagcgga tcgtggttcc ggtggatttc agtcgagcca
     4501 gcattcgtgc ggcgaacctt gcccggcgca tcatcgacga gcacggaacg atgcatcttc
     4561 tgttcatcga gccatcaaga ccgccggcca ggacggaaag tgaagaagcg ttcgagctga
     4621 ttcacacgcg cggcgtcgag acagcgttca gccagttggt agcagagctc tggccctcgg
     4681 tcggtgtgac gatcgatacc gtagtgcgcc gggggagtcc tgtcgcggaa ataacgcgtt
     4741 tcgctcagga atgcgatgcc gatctcatcg ctattggaag tcaacggcat ccctttctcg
     4801 atcgattgct aatcggcagc gtgacgaagg cgatcacaac ggacgccaga tggtcggtcc
     4861 tggtgacacc gccggagctt gccagccgtc gctgagcgaa acgcgcagcg aaaggcgcag
     4921 cgaaaggcgc ggcgttgcag atgctatggc tgcgcgccgc gcttgcgcca ccaccgcgcg
     4981 atcccgtcga cactcatgcg atagttgccc gcttcctcgt atcggcgcag cagggatgga
     5041 tctccagtgc gggcgagcgt aacgtcctcc atcgctcgca gtgcgtcgga cgtggcgtca
     5101 gcttcctcac cagtcgccag ccggccgccg acccatccgg cccagaacca cgtgcgcgac
     5161 agcaactcgt ccagatgcca cgccacgtcg tcgtagccgc caaagtgtgt gagatacaga
     5221 cggcgcggct cgagtgtgcg cagagtggcg atgctcttct gccatttttc gggagaaaat
     5281 tccggcggcg gcgtcggggg tcgcaagtga cccgtgccat cgagacgaac gccagcgaca
     5341 tcgccggtga agacagagcc ggtatcagga tcgtgcaacg ccagatggtg attcgcatgt
     5401 ccgggagtat cgtacgcgcg cagtgtgcgc gaacccgtgt gcagatcggc gcgatctccg
     5461 agaacgctga gacggtcctc aggtaccgga atcatctcac cccagagcgg ccccatcaga
     5521 tcgccgtaga ttcgagttgc gctcgccatg agtttcgccg gatcgatcat gtgcggagcg
     5581 ccgacgggat gtacgtacag tcgcgcgcgc ggcaacacgc ggagcaggga tccggcgccg
     5641 cctgcgtgat cgaggtgaat gtgtgtcacc acgacgcgct cgatgtcttc cggatcgaag
     5701 ccggcctgac ggataccggc cagcagtgtt tcctgcgtac tggctggacc agtctcgatc
     5761 agcgtcagcg cgccgtcgtc ggtgaccagg tacgacgcga tgacgccggg cgagccgcga
     5821 aagtgatgat cgagcaggaa tacaccgggc tcgacttcgc tcgcgagacg gttggatgct
     5881 ggagtgtggt ctacggaaga tgtcatttgc gtttgttcag tgcggctcct tgccggttac
     5941 cacgcgccac gtatcgcgcg cgatgagcag ctcctcgtcc gtgggtatta cccagagctg
     6001 tatccgtgcg ccatcgtgat cgaagcgtcc ttctgcgccg cccgtgagag cggcattgag
     6061 cccgccatcg gcctgtatgc caagccagtc catgccggcg catacccgct cgcgaaccgc
     6121 gggtgagttc tcaccgatcc cacccgagaa tattattgcg tcagcaccgt tcatggcggc
     6181 gagatacgca ccaatgtatt tacgcacccg gtagcagaag acgtctatcg ccagccgcgc
     6241 acgacggtcg ccattctcgc tgtcctctgc cagcagctcg cgcatgtcgg cggtgagacc
     6301 cgagaggccg agcaggccag actgcttgtt caacatcatg tccatgtcgc gactggtgag
     6361 tccttccttg gcacccacgt aatcgagaat tgccggatcg atatccccgg accgcgttcc
     6421 catgacgagt ccttcgagcg gggtgaatcc catggacgta tcgatcgaat gtcctgccac
     6481 gatcgcgcac gcggacgcgc cgtttccaag gtgcagcgtg atgatgcggg tttcgtcacg
     6541 ggtctttccg gtgagctgtc gatatcgata cgcgatgtat cggtgcgacg tcccatggaa
     6601 tccgtaacgt cgcaccctgt atcgcctgta gagctggtac ggtatcgcgt acagatgtgc
     6661 ggtctctggt atcgtctggt gaaatgcggt atcgaatacc gcaacctgtg gtacgttttc
     6721 gccgagcact tcgcgcgccg ccgcgatgcc tgcaagattg tgcggattgt gcagtggggc
     6781 aatatcgatg agctgctcga ggtcgcttcg gaccgccgta tcgatgagaa cggattgcgt
     6841 gaatcgttct ccgccgtgca ccacccggtg gcccaccgct tcgatgtcgg atgctgcggt
     6901 gatctcgaca ccggaagcag gatccgccat ccatgtgatg acgcgctcga ccgcatccct
     6961 gtgattgcgg atctgtgtcg tcgagtgtga tggtgtcgca gatcctgcag cgagggtgag
     7021 gattgcctca ccgccgatgc gctcgatctg accgctcgcg agtcggcggt cactgttgcc
     7081 gtcgatcgcg ctctggtcag tttctatgag ctgaaacttg agcgatgaag atccggcgtt
     7141 gaggaccagg atcttcatgg cgcggtgtgc ccggaccagc gccagtcgcg aatctccggc
     7201 atgtcgtcgc cgtactcgtt gacatatgcg cgatgcgcga tgagtttgga acggaatata
     7261 tccgccgccg cggatgccgc cgcgttgttc ctgagacgcg gtacacgcgc gataacgtcc
     7321 agcgcgaggt ggaaccggtc catgtcattg agcacggtca tgtcgaacgg cgtagtggtg
     7381 gtgccttctt ccttgtaacc gcgcacgtgc atgttgtcgt ggtttgtgcg gcggtacgtg
     7441 agacggtgga tcagcagcgg atagccgtga aatgcaaata tcactggtct gtccctggtg
     7501 aacatggcgt cgaactccac atccggcaag ccgtgcggat gttcgctatc aggctgcaga
     7561 gccatcagat cgacgacgtt gaccacgcgc atgcggaggt cgggtatgtg agtgtgcagc
     7621 aaatccactg tcgcaaggac ttcgagtgtg ggcacatcgc cgcagcatcc gagcaccaca
     7681 tccgggtcgg cgccatcatc attgctcgcc cagtgccaga tgccgagccc cttgccgcag
     7741 tgtgccgccg ccgcatcgat gtccagccat tgcggttcag gttgttttcc ggcaacaatc
     7801 acgttcacat aattcctgct gcgcaggcag tgatccgcaa cggagagcag ggtattcgcg
     7861 tcaggcggga gatacacgcg caccacgtca gccttcttgt tcaccacatg atcgaggaac
     7921 cccggatcct ggtgactgtt gccattgtgg tcctgccgcc agacatgcga tgtaaggagg
     7981 tagttgagcg atgcgatcgg ccgccgccac ggaatgttgc gagccgtagc aagccatttt
     8041 gcgtgctggt tgaacatcga gtccacaatg tggatgaatg cttcatagca ggaaaacagg
     8101 ccatgtctgc cggtaagcag atatccctcc agccatccct cgcacatgtg ctcgctcaat
     8161 acttccatca ccctgccgtc gggcgcgacg tggtcatcac tcggcaatat ctccgccgtc
     8221 gacgtgcgat cggtaacctc gaacaacgcg tcgagcctgt tggagcttgt ttcgtccggc
     8281 cccatgacgc gaaaattgct cgcgctcatg ttgagctgca tcacgtcgcg aagaaagttg
     8341 ccgagtacgc gggtggattc tgcgtccact gttcccggcg ccggtacgct caccgcatag
     8401 tcacggaacg ccggcatcgc cagatccttg agcagcaacc ctccattggc gtgaggattg
     8461 gcgctcatgc ggtgtgttcc tgttggcgcg atgtgtgcga tctccggcat cagtgcgcca
     8521 ttctcatcga acagttcttc ggggcggtag ctcttcatcc actgctcgag caatgcgaca
     8581 tgccccggat tgtctgcgaa tccggtgatc ggtacctgat gcgaccggaa tgaaccctca
     8641 gtctgctttc catcgacgaa ctttggccca gtccagccct tgggtgaccg caggactatc
     8701 atcggccagg gctcgcggtg cgtgaagccg tgctcgcgcg cgtcgtgctg gatgcgcttg
     8761 atgtctgtca gtacggtgtc catcgttgca gccatgagct gatgcatcac gtgtgtgtcg
     8821 tcgccggaga cgaaatgcgg atcatagccg taccctcgca gcagcgatgt cagctcgtcg
     8881 tcgccgattc gcgcgaggac cgtcggaccg gcgatcttgt agccgttgag gtgcaggatc
     8941 ggaacaactg cgccatcccg cgcgggattc aggaacttgt tcgaatgcca gctcgtcgcg
     9001 agtgcgcccg tttctgcctc accgtcaccg atcgcgcagc acacgaagag atccggattg
     9061 tcgaatacgg cgccgtaggc atgcagcagc gaatatccca gctctccacc ttcatggatg
     9121 gatccgggcg tctcgggagc gtcgtgactg ggaatgcctc ccgggatcga gaattgcttg
     9181 aacaggtgtt ggagaccagc ggtgtcgcga ctcactcttg gatagatctc gctgtacgtc
     9241 cctt
//
LOCUS       DATIMD010000342         4404 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4757504, whole genome shotgun sequence.
ACCESSION   DATIMD010000342 DATIMD010000000
VERSION     DATIMD010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4404
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4757504"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..602
                     /gene="pdxH"
                     /locus_tag="VLI40_07630"
     CDS             <1..602
                     /gene="pdxH"
                     /locus_tag="VLI40_07630"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF004231.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HSU97083.1"
                     /translation="DMTPFAEPFVRFGELFARAAAELPRECFPDPNTMSVATVGADGR
                     PSNRIVLLKAFDERGFVFYTNYEGRKGRELLANPYCALCFHWPPIEIQIRIEGRAEST
                     SDAEADAYFASRARASQLGAWASDQSRPMTAPGELERRVAEFAARFEGVSVPRPPHWS
                     GFRVVPDRIEFWRNRASRLHDRTVYQRAGDGWRVTALYP"
     gene            617..2566
                     /gene="speA"
                     /locus_tag="VLI40_07635"
     CDS             617..2566
                     /gene="speA"
                     /locus_tag="VLI40_07635"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF003763.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HSU97084.1"
                     /translation="MTTTSHPEPFAHTGSEPWTIDESRALYNIEGWGNGYFEINSKGH
                     VVVRPDKDERGRELDLFELAMDLEAQGVGMPLLIRFSDILRSRIEDLHERFTHAIKEF
                     DYSGGYTTVYPIKVNQQRHVVEEIVEFGQPFGVGLECGSKPELQAVLGLAETTGHTIV
                     CNGYKDEEFMRLALMGQKLGHEVFIVMEQVSEVDVLLQVAAELNVRPNIGIRIKLFAE
                     GAGRWAESGGEKSKFGLSPSQLVRVIDKLTDAGYLDCVHLLHFHLGSQITDIRYIKAG
                     LQEIARYYSELRKMGVDVTHVDVGGGLGVDYDGTRSTAHASVNYTLQEYANDIVYTLA
                     EACREEELPMPHIISESGRALTAHHALLLISVIDVESVTEVVPPQLDENDHALLHEMA
                     TDLETVNTRRLREVFHDATFDKERAQQLFASGVLSLRGRARAEQLHLALINSVAREAR
                     KDREEYSEIIEDLEATLVDRYFCNFSLFQSLPDSWAIDQLFPIMPVHRLDEEPVRRGT
                     IQDVSCDSDGKIDRFVGGERNSPRQSLELHPFHDGEPYIIGIFLTGAYQEILGDLHNL
                     FGDTNAVHIRLKERGYEITDLVHGDTVTEVLAYVQFRAADLLTTFRRKVSNAKNITRD
                     EANAFIADYLAGLEGYTYLEGDAAR"
     gene            complement(2568..3170)
                     /locus_tag="VLI40_07640"
     CDS             complement(2568..3170)
                     /locus_tag="VLI40_07640"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HSU97085.1"
                     /translation="MAFTLPALPYDFAALEPSIDARTMEIHHDKHHAGYVNNLNAALE
                     KAPELQSRSLDDLLQNLDSVPESIRTAVRNNAGGHWNHSMFWEIMSPKGGGEPTGKLA
                     DAIKKSFGDFATFQTQFADAAAKRFGSGWAWLVKDGTKLSITSTPNQDTPVMEKKHPI
                     LGVDVWEHAYYLKYQNKRPDYVKAWWDVVNWPEVGRRFEA"
     gene            complement(3175..3795)
                     /locus_tag="VLI40_07645"
     CDS             complement(3175..3795)
                     /locus_tag="VLI40_07645"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HSU97086.1"
                     /translation="MHGLSELFHRLRDVSGLVQAAGYTGMAAIIFAETGLLIGFFLPG
                     DSLLVSAGLLGSQGYIDVWLLGLVLSVAAVLGDTVGYAIGKASGPHLFTREQSLLFNR
                     KHLVRAHEFYERHGGKTILIARFMPIIRTFAPVVAGMGEMQYSRFLAYNVVGGVAWVW
                     SMLLLGYSLGRTFPGVAKHIELLILVIVFLSILPAIIARYKTKSET"
     gene            3970..>4404
                     /locus_tag="VLI40_07650"
     CDS             3970..>4404
                     /locus_tag="VLI40_07650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97087.1"
                     /translation="MTPASAAVVNGLSDANAPSAAYVTDAVNRKVVATIEHDATGESG
                     KLRAEIQDASEKPGVIKAVITAGGALKRVADFALITPRSASDVSRGRLGLYYIGNWPR
                     ATATKGGRIEYRPPSGFIEVTPSNENTRLSQHFEIKDFLTHDQ"
BASE COUNT          931 a         1331 c         1329 g          813 t
ORIGIN      
        1 ctgacatgac tccgtttgcg gaaccgttcg tacgctttgg cgaactgttc gcgcgcgccg
       61 ccgcagagct tccgcgcgaa tgtttccccg atcccaacac gatgtcggtg gcgacggtcg
      121 gtgccgacgg gcgtccgtcg aacagaatcg tgctgctcaa ggcattcgac gagcgcggct
      181 tcgtgttcta cacgaattac gaggggcgaa agggccgcga gctgctcgcc aacccatact
      241 gcgcgctgtg ctttcactgg ccgccgatcg agattcagat acgtatagaa gggcgcgccg
      301 aatcgaccag cgatgctgaa gcagacgcat atttcgcgtc gcgcgcgcgt gccagccagc
      361 tcggcgcgtg ggcatcggat cagagtcgcc cgatgacagc gccgggagag ctcgagcgac
      421 gcgtcgcgga gttcgccgcg cgcttcgagg gagtgagcgt gccacggccg ccccactggt
      481 ccggctttcg cgttgtaccg gacaggatcg agttctggcg caatcgagcg agccgattgc
      541 atgaccgcac cgtttaccag cgagccggtg acggatggcg cgtcacggcg ctctaccctt
      601 gattaaacta gagagcatga ccaccacatc tcaccccgaa cccttcgcgc acaccggctc
      661 cgagccatgg accatcgacg agtcgcgcgc gctctacaac atcgaagggt gggggaacgg
      721 gtatttcgag atcaactcca aggggcacgt tgtcgtccgc cccgacaagg atgagcgcgg
      781 tcgcgagctg gatctgttcg agctcgcgat ggatctcgaa gcgcagggcg tgggcatgcc
      841 gctgctcatc cgcttctccg acatccttcg ctcgcgcatc gaagaccttc atgaacggtt
      901 cacgcacgcg ataaaggaat tcgactacag cggcggctat acaacggtct atccgatcaa
      961 ggtcaatcag cagcgtcacg ttgtcgagga gatcgttgaa ttcggtcagc ctttcggcgt
     1021 cggactggaa tgcggcagca agccggagct gcaggcggta ctcgggctcg cggaaaccac
     1081 cggtcacacg attgtctgca acggctacaa ggacgaggag ttcatgcgcc tcgccctcat
     1141 gggccagaag ctcggccatg aagtcttcat agtaatggag caggtgagcg aggtcgatgt
     1201 gctgttgcag gtcgccgccg agctcaacgt gcggccgaac atcggcattc gtatcaagct
     1261 ctttgcagaa ggtgcaggtc gctgggcgga gagcggcggc gagaagtcaa aattcggact
     1321 cagcccttcg caactcgtac gcgtcatcga caagctgacc gacgccggct atctcgactg
     1381 cgtgcatctg ctgcactttc atctcggctc gcagatcacc gacatcagat acatcaaggc
     1441 cggtctgcag gagatcgcgc gctattactc cgaactgcgc aagatgggtg tcgacgttac
     1501 gcatgtggat gtcggcggcg gcctgggtgt ggattacgac ggaacgcgct cgaccgcgca
     1561 tgcaagcgtc aactacacgt tgcaggagta cgccaacgac atcgtgtaca cgctggcgga
     1621 agcctgtcgc gaagaagagc tgccgatgcc gcatatcatc agcgaatccg gccgcgcatt
     1681 gacggcccac cacgcgctgc tgctgatcag tgtcatcgac gtcgagtccg tcactgaagt
     1741 cgttccaccg cagctggacg agaacgatca cgcgctgttg cacgaaatgg cgaccgacct
     1801 cgaaaccgtc aacactcgcc ggctgcgcga ggtgtttcac gatgcgacct tcgacaagga
     1861 gcgcgcacag cagttgttcg cgagcggcgt gctgtcgctc cgcggccgcg cgcgcgcgga
     1921 gcagctgcat ctcgcgctga tcaactcggt cgcacgggag gcccgcaagg accgcgagga
     1981 atattccgag atcatcgagg acctggaagc aacgctcgtg gaccgctact tctgcaactt
     2041 ctcgctgttc cagtcgctcc ccgacagctg ggccatcgat cagctctttc cgatcatgcc
     2101 cgttcaccgg ctggacgagg agccggtgcg ccgcggcacc atccaggacg tgtcgtgcga
     2161 cagcgacgga aagatcgacc gcttcgtcgg cggggagcgc aactcaccgc gccagagtct
     2221 cgagctgcac ccgttccacg atggcgagcc ctacatcatc gggatctttc tcactggtgc
     2281 gtaccaggag atactcggcg atctgcacaa tctgttcgga gacacgaacg ccgtgcacat
     2341 ccggctcaag gagcgcggat acgagatcac ggatctcgtg cacggcgata cggttacgga
     2401 agtgctggcc tacgtgcagt tccgcgccgc cgatctgttg acgacgttcc gccgcaaggt
     2461 aagcaacgca aagaacatca cgcgcgacga ggcgaatgcc ttcatcgctg attacctcgc
     2521 ggggctggaa ggctacacgt acctggaagg agacgcggcg cggtaggcta cgcctcgaat
     2581 ctccgtccca cctcgggcca gttcacgacg tcccaccacg ccttcacgta gtcggggcgc
     2641 ttgttctggt acttgagata gtacgcatgc tcccatacgt ccacgccgag tatgggatgc
     2701 tttttctcca ttacgggcgt gtcctgattg ggagtgctgg tgatgctcag cttggtgccg
     2761 tccttgacga gccaggccca acctgagccg aagcgcttcg ccgcggcatc ggcaaactgt
     2821 gtctggaacg tcgcgaagtc gccgaacgat ttcttgatcg catccgcaag cttgcccgtc
     2881 ggctcgccac cgccctttgg cgacattatt tcccagaaca tcgagtgatt ccagtgtccg
     2941 ccggcgttgt tgcgcaccgc cgtgcggatc gactccggca cagaatcgag attctgcaac
     3001 agatcgtcga gcgaccggga ttgcagctcg ggagccttct cgagcgctgc attgagattg
     3061 ttcacatatc cagcgtgatg cttgtcatga tggatttcca tcgtgcgggc atcgattgac
     3121 ggctcgagtg cagcaaagtc gtacggcagg gcagggagcg taaaagccat gacttcaggt
     3181 ctccgatttg gttttgtacc gggcgatgat cgccggcagt atggacagaa acacgataac
     3241 cagaatgagc agctcaatgt gcttcgcaac gccggggaac gtacgcccga gcgaatagcc
     3301 aaggagcagc atagaccata cccaggccac tccgcctaca acgttgtagg caagaaatcg
     3361 cgagtactgc atctcgccca tccccgcgac tactggcgcg aaggtgcgta tgatgggcat
     3421 gaatcgcgca atgagaatcg tcttcccgcc gtgccgctcg tagaactcgt gcgcacgaac
     3481 tagatgttta cgattgaaca gaagcgactg ttcgcgggtg aacagatgtg gaccgctagc
     3541 cttgccgatt gcgtagccaa cagtatcacc aaggaccgca gccacgctga gaacgagacc
     3601 caggagccag acgtctatgt atccctgcga gccgagcagg ccggctgaca cgagcagcga
     3661 atcacccggc agaaaaaaac cgatcaggag tcccgtttcg gcaaatatta tcgcagccat
     3721 gcccgtatac ccggctgcct gtacaagccc tgaaacgtcg cgcagccggt ggaacagctc
     3781 cgataaaccg tgcattctgt aagagtcgat gttgatggga tcgccgtcca agggactgga
     3841 cgggcgggct tgtcggagcg cgccgaacag gtgttcgaaa agctctcaag cgcgttcgta
     3901 gtactgcttg gatgcgcctg ggctttctcc atagcatcag cacgggcgac tggcgacaaa
     3961 gttaacatcg tgactccggc gtcggccgcc gttgtgaacg gactgagcga cgcaaatgcg
     4021 ccaagcgcgg catacgtgac ggatgccgtc aacagaaagg tcgttgcaac catcgaacat
     4081 gatgcgacgg gcgagagcgg taagctgcgc gctgaaatcc aggacgcgag cgagaagcct
     4141 ggcgttataa aggccgtgat cacggctggt ggagcactca agcgagtcgc cgatttcgcg
     4201 ctcatcacgc ctcgatccgc gagcgacgta tctcgcggcc ggctcggatt gtactacatc
     4261 ggcaactggc cgcgagcaac cgccaccaaa ggtggacgca tcgaataccg gccgccgagc
     4321 ggcttcatcg aggtaacccc gtcaaacgaa aacacgagac tttcacaaca cttcgagatc
     4381 aaggatttcc tcactcacga tcag
//
LOCUS       DATIMD010000343         2286 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2442135, whole genome shotgun sequence.
ACCESSION   DATIMD010000343 DATIMD010000000
VERSION     DATIMD010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2442135"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1123)
                     /locus_tag="VLI40_07655"
     CDS             complement(<1..1123)
                     /locus_tag="VLI40_07655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HSU97088.1"
                     /translation="MYQKSIRKYLTTCTLATVAAASAALVLPSIAAAQQVAHQAIDSA
                     YTAQIKKDLEDPRITTELVDYLPASSTVPTPLKVLGHIIGAPGELDRSADIYKYFDAL
                     AKASPRVKVWRIGKTEEGREMILAAIGDEETIRNIDNYRGMLAQLSDPRKTTQEEAQK
                     LIHTAKPIYYITSGIHSPEFGGPEMLMELAYRLVVDSSALVTNVRNNVITLITPVVEP
                     DGRDKAVDTYYYNKKLAKGAERLPLMYWGKYVQHDNNRDGMGQFLKLTQHTTQAVLDW
                     HPTVLHDLHEAQTYLYASTGTGPYNEAVDPITIDEWWMMAENDVMEMTKRGVPGVWTY
                     GYYDGWTPNYLFFIAHTHNEVGRIYEVQSYGPDNYVVKPR"
     gene            1283..>2286
                     /locus_tag="VLI40_07660"
     CDS             1283..>2286
                     /locus_tag="VLI40_07660"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU97089.1"
                     /translation="MTDSAKRWTLIGSILGSGAVFIEGSVTNVALPAIARDLHLGITG
                     LQWTMNGYLLTLSALILLGGALGDRFSRRKVFAWGLFGFAAASLACAVAPDLILLVTA
                     RIFQGIAGGILVPNSLALLESTFEGEERGAAVGHWASWSAVSTAVGPLLGGWIVDASS
                     WRFVFVIMIPFAIAGAIVVTVAGRSAKEAKSAATVDYAGAALMTLGLGAVVGALMLGS
                     DRGFTTPYPAAIGVAGIVLLVAFIIVERHTKEPLLPPDTFGSKKFTGVNAATFAIYAA
                     LTGLFFLLMLQLQNVLGYSALAAGASLMPINLLLLVISPFAGRFAERRGARLPMTAGA
                     L"
BASE COUNT          384 a          694 c          718 g          490 t
ORIGIN      
        1 cacgcggctt cacgacataa ttgtccggcc cgtaactctg cacttcgtag atgcgcccaa
       61 cttcgttgtg cgtgtgcgcg atgaagaaga gatagttcgg cgtccacccg tcgtagtatc
      121 cgtacgtcca cacacccggc acgccacgct tcgtcatctc catcacgtcg ttctcggcca
      181 tcatccacca ctcgtcgatc gtgatcggat cgacggcctc gttgtacggc ccggtgccgg
      241 tcgaagcata gagatacgtc tgcgcctcgt gcagatcgtg caaaactgta ggatgccagt
      301 cgagcaccgc ctgcgtggtg tgctgcgtga gcttgaggaa ctgacccatc ccgtcacgat
      361 tgttgtcgtg ctgcacgtac ttgccccagt acatcagcgg caaccgctcg gcgccctttg
      421 ccagcttctt gttgtagtag taggtgtcga cagccttgtc gcggccgtcc ggctcgacaa
      481 caggcgtgat cagcgtgatg acgttgttgc ggacgttggt aacgagcgcc gacgagtcca
      541 ccaccaatct gtacgccagc tccatcaaca tctcggggcc gccaaactcg ggcgagtgga
      601 tgccgctggt gatgtagtag atgggcttcg cagtgtggat aagcttctgc gcctcctcct
      661 gcgtcgtctt gcggggatcg ctcagctgcg cgagcatgcc gcgatagttg tcgatgttcc
      721 ttatcgtctc ttcatcgccg atggcagcga ggatcatctc gcgcccctcc tccgtcttgc
      781 cgatgcgcca gaccttcacg cgcggcgacg ccttggccag cgcgtcgaag tacttgtaga
      841 tgtcagccga tcgatccagc tcgcccggcg cgccgatgat gtgtcccagc accttgagcg
      901 gcgtgggcac ggtggacgac gcgggcagat aatccacgag ctccgtcgtg atgcgcggat
      961 cttccagatc cttcttgatc tgcgcggtat acgcggagtc gatggcctga tgcgcaactt
     1021 gctgcgcggc ggcgatcgaa gggagcacga gcgctgcaga ggcggccgct acagtggcca
     1081 gcgtgcaggt cgtcagatac ttgcggatcg acttctgata catcctgtct tcctctcggg
     1141 ttggatcgag tggcgccggg aggcaccggg tcttgcgtgg agggtgcgat ataatacggc
     1201 aacccggagg gtggcgttag gcttgcacgc accccggcgg tcgcaagcgc attccgaaga
     1261 tccactcgaa ccactgatcc aattgaccga ttccgcgaag cgctggacgc tcatcggctc
     1321 gatactcggc tccggtgcgg tgttcataga gggaagcgtg accaacgtcg cgcttccggc
     1381 gatcgcgcgc gatctgcatc tcggaatcac gggcctgcag tggacgatga acggctatct
     1441 gctgacgctg agcgcgctga tcctgctcgg tggagcgctc ggcgaccggt tctcgcgccg
     1501 caaggtattt gcgtggggac tgttcggatt cgccgccgca tctctcgcgt gcgcagtcgc
     1561 gccggatctg atcctgctcg tgaccgcgcg aatatttcag ggaatcgccg gcggcatact
     1621 cgttccgaac agcctcgcgc tgctggagtc cacgttcgag ggcgaggagc gtggcgccgc
     1681 ggtcggccac tgggcgtcat ggtcggcggt gtccacggcg gtaggaccac tgctcggcgg
     1741 atggatcgtg gacgcatcgt cgtggcgatt cgtgttcgtg atcatgatac cgtttgcgat
     1801 cgctggcgcc atcgtcgtga ctgtcgcggg cagatcggca aaagaagcga aatccgcagc
     1861 aactgtcgat tatgcaggtg cggcactcat gacacttgga ctcggcgcag tggtcggcgc
     1921 tctcatgctc ggatccgatc gcggattcac gacaccatat ccggcggcga tcggcgtcgc
     1981 gggcatcgta ctgctcgttg cgttcatcat cgtcgagcgg cacacgaaag agccgctcct
     2041 tccaccagat actttcggat cgaagaaatt caccggtgtg aacgctgcca cgttcgcgat
     2101 atatgctgcg ctgacgggac tcttctttct tctcatgctg cagctgcaga acgtgctcgg
     2161 ttacagcgcg cttgcagcag gcgcatcgct gatgccgatc aatttgctgt tgctggtcat
     2221 ctcaccgttt gccgggcgtt tcgccgagcg acggggagcg cggctgccga tgactgcggg
     2281 ggcgct
//
LOCUS       DATIMD010000344         1514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3023438, whole genome shotgun sequence.
ACCESSION   DATIMD010000344 DATIMD010000000
VERSION     DATIMD010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3023438"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1501)
                     /gene="uvrC"
                     /locus_tag="VLI40_07665"
     CDS             complement(<1..1501)
                     /gene="uvrC"
                     /locus_tag="VLI40_07665"
                     /inference="COORDINATES: protein motif:HMM:TIGR00194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HSU97090.1"
                     /translation="MYLWKGADGTVLYVGKAKRLRSRVRSYFASDHPFSLKTQHLVRN
                     IADLETIVVPTEAHALILEANLIKEYHPKFNIALRDDKSYPYIKVTVNEPFARVFVTR
                     QVTNDGAKYFGPYTDVGAMRRSLNVVKRIFTVRSCNYDMPREMPERPCLDYFIQRCKA
                     PCVFKQTQPEYAAMIDEVLLFLEGRSDEVVRRVRERMELAASSLDFERAAELRDVLVH
                     LERMEEPTVVLRVEGGDRDVIGYARDGDDAVVALLRIREGKLLAREHRFMENVDGEDD
                     ADVLRLFLAGSYVAMPEHASELVLPFDFPDRELIEQSLSGERIHIPQRGVRRELVELA
                     EQNARHLLEELKLASAESVVRAGEPVYELARELSLQKLPRTMVCFDISTTQGTDTVGS
                     AVFFENGRAKRAEYRKFKVKTVVGTDDFASMNEVVARYFNRRREDGKPLPDLIVIDGG
                     KGQLSAAHAALDAIGLGDQPLISLAKREEEIFVWGRSDPLRLSRRSPALR"
BASE COUNT          288 a          505 c          430 g          291 t
ORIGIN      
        1 ggcgcaacgc gggtgatcgt cgtgaaagtc tgagcggatc ggacctcccc cacacgaaga
       61 tttcttcctc gcgcttcgcc agactgatga gcggctggtc gccaagtcca atggcgtcca
      121 gcgccgcgtg tgccgcggag agctggccct tgccaccgtc gatgactatc agatccggaa
      181 gcggcttgcc gtcttccctg cggcggttga agtagcgtgc gacgacctcg ttcatcgacg
      241 cgaagtcgtc ggtcccaacg acagtcttca ccttgaactt tcgatactcc gcgcgctttg
      301 cacgtccgtt ctcgaaaaac accgccgacc cgacagtgtc ggttccctgc gtcgtcgata
      361 tgtcgaagca caccatcgtg cgtggcaact tctggagcga caactcacgc gccagctcgt
      421 acaccggctc gccagcgcgc actaccgact ctgccgacgc aagcttcaac tcttcgagca
      481 gatggcgcgc gttctgctcc gccagctcga cgagctcacg acgcactccc cgctgcggga
      541 tgtgaatccg ctcgccggac aaagattgct cgatcagctc gcgatcggga aagtcgaacg
      601 ggagcacgag ctccgaagcg tgctccggca tcgctacgta actgccggcg aggaacagcc
      661 gcaacacgtc ggcgtcgtcc tcaccatcca cattttccat gaagcgatgc tcacgggcga
      721 gaagcttgcc ttcccgtatc cgcaacagcg cgaccaccgc gtcatcgccg tcgcgcgcat
      781 agccgatgac gtcgcgatcg ccgccctcca cgcgcaggac gacggtcggc tcttccatcc
      841 gctccaggtg caccagcacg tcgcgaagct ccgcggcacg ctcgaaatcc agactggatg
      901 cagcgagctc catccgctcc ctcactcgac gtactacctc gtccgagcga ccttcgagaa
      961 acagcagcac ttcatcgatc attgcggcgt actcgggctg cgtctgcttg aacacgcatg
     1021 gcgccttgca ccgctgaatg aagtagtcga ggcacggtcg ctccggcatc tcgcgcggca
     1081 tgtcgtagtt gcacgaacgc acggtgaata tccgtttcac cacattgagc gatcgacgca
     1141 tcgcgccgac gtcggtgtag ggaccgaaat acttggcgcc gtcgttggtc acctgccgcg
     1201 tgacgaacac gcgcgcgaac ggctcgttca cggtgacctt gatgtatgga tacgacttgt
     1261 catcccgcag tgcgatgttg aacttgggat gatattcctt gatcagattc gcttccagaa
     1321 tcagagcgtg cgcctcagtc ggcacgacga tcgtctcgag gtcggcgatg ttacgcacga
     1381 gatgctgcgt cttgaggctg aacggatggt cgctggcgaa gtagctgcgc acgcgcgagc
     1441 gcagccgctt ggcctttccg acatacagta ccgttccatc ggcgcccttc cagagataca
     1501 ctccggggcc atcc
//
LOCUS       DATIMD010000345         2832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3600990, whole genome shotgun sequence.
ACCESSION   DATIMD010000345 DATIMD010000000
VERSION     DATIMD010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3600990"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..363
                     /locus_tag="VLI40_07670"
     CDS             <1..363
                     /locus_tag="VLI40_07670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97091.1"
                     /translation="AKAANYPSANLIPAGYVPPPGVAASNAVPQMGLHWTDLKAPELN
                     GQGFSNTFIFGSWDGKFIFLEPMITKAYLETHPNATRAIPQPAAWGTSGRFPTSYTVS
                     YDQSAKEYRFTLGGLTQH"
     gene            556..1554
                     /locus_tag="VLI40_07675"
     CDS             556..1554
                     /locus_tag="VLI40_07675"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSU97092.1"
                     /translation="MIAQRKLGTQGLTVSAIGLGCMGMTASYGSPEERDEREAIATLH
                     RALEIGVTFLDTAEVYGPFTNEELLGRALKGKRDQATIATKFGWRIGKPGEERGLDSR
                     PLHIREAVEGSLRRLQTDHIDLLYQHRVDPAVPIEDVAGAMADLVHAGKVRFLGLSEA
                     GEETIRRAHTVHPISALQSEYSLWERNLEPRIIPLLRHLRIGLVPFSPLGRGFLTGAV
                     KRADEYPAGDFRRGDPRFQGANFDANMRAVSIVKEIAAQKKATPAQIALAWLLHKGDD
                     IVPIPGTKHRARLEENAAAVDVTLDDADMRRLDEALAPDNVAGERYNEERMATVDR"
     gene            1560..2546
                     /locus_tag="VLI40_07680"
     CDS             1560..2546
                     /locus_tag="VLI40_07680"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSU97093.1"
                     /translation="MQKRILGRERLEVSALGLGCMGMSEFYGTHDDDASIATIHRAIE
                     LGVTLLDTADMYGPFTNEQLVGRAIHDRRDKVVLATKFGNMRSESGAYLGINGSPEYV
                     RKACDASLQRLGVNHIDLYYQHRVDPKVPIEDTVGAMADLVREGKVRHLGMSEAAPAT
                     LRRANAVHPITALQTEYSLWSRDVEDEILPTCRELGVGFVAYSPLGRGFLTGRFKSES
                     DLPADDWRRNNPRFQGANFDRNLDLVRHVEQLAKSKGCTPSQIALAWLLHRGNDIVPI
                     PGTKRVKYLEENVGALDVTLTAADMSRIDAIAPRGVAAGERYPEGGMRSVSL"
     gene            complement(2646..>2832)
                     /locus_tag="VLI40_07685"
     CDS             complement(2646..>2832)
                     /locus_tag="VLI40_07685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97094.1"
                     /translation="HVANRRDRAARSRGGRAVSGRRDEVGEFVGADERFVIPTNAGSG
                     VVIPAKAGIHVIDLWMR"
BASE COUNT          558 a          851 c          910 g          513 t
ORIGIN      
        1 gccaaggcgg cgaactatcc gtcggcgaat ctgattccgg cgggttacgt cccgcctccc
       61 ggcgtcgcgg cgtcgaatgc agtgccgcag atgggccttc actggaccga cctcaaggca
      121 ccggagctga acggtcaggg attcagcaac acgttcatct tcggctcgtg ggacgggaag
      181 ttcatcttcc tcgagccgat gataaccaag gcctacctcg agacgcatcc caacgcaact
      241 cgcgcgattc cgcagcctgc tgcctggggc acgtcgggtc gtttcccgac cagttacacg
      301 gtcagctacg atcaatcggc aaaggagtac cgcttcacac ttggcggctt gacccagcac
      361 tgaggtcgat cgcgatcgtg gttcgcgatc cgcgatcgcg tatgcagtgc cgatcggcgc
      421 gcaccggggt gatctcacga ccactgcccc gtgcgcgccg gtttgtcgcg ttctgccact
      481 tccagtcgcg cgactgtgca cccttatttc ggatagatga cgcaccgtca tcccaacgaa
      541 agaggaacag caggcatgat cgctcagaga aagctcggaa cacaaggcct caccgtctcc
      601 gccatcggac tcggttgcat gggaatgact gcatcatatg gatcgccgga ggagcgtgac
      661 gagcgggaag ccatcgcgac gctgcaccgc gcgctcgaga tcggcgtcac gttcctggat
      721 accgccgaag tgtacggccc gttcacgaac gaggagctgc tcggccgcgc gctcaagggg
      781 aaacgggacc aggcgacgat cgcgaccaag ttcggatggc gcatcggaaa gcccggcgag
      841 gagcgcggtc tcgacagcag gccgttgcac atccgtgaag ccgtggaggg ctcgctgcgc
      901 cgactgcaga ccgatcacat agatcttctg taccagcatc gtgtcgatcc cgcggtgccg
      961 atcgaggatg tcgctggtgc gatggccgat ctcgtgcacg cgggcaaggt tcgttttctc
     1021 ggactgtcag aagcaggcga ggagaccata aggcgcgctc atacggtgca cccgatatct
     1081 gcattgcaga gcgagtattc gttgtgggag cgcaatctcg agccgcgtat cattccgctg
     1141 ttgcgtcatc tcagaattgg cctggttcca ttcagcccgc tcgggcgtgg atttctcacc
     1201 ggcgctgtca agcgcgccga cgaatatccg gcgggcgact tccggcgggg cgatccgcgc
     1261 tttcagggcg cgaattttga tgcgaacatg cgagcggttt cgatagtgaa ggagatcgcg
     1321 gcgcagaaga aggcgacgcc ggcacagatt gcgctcgcgt ggctgttgca caagggcgac
     1381 gacatagtgc cgatcccggg aacgaagcat cgcgcgcgtc tcgaagagaa tgcagctgcc
     1441 gttgatgtga cgctcgacga cgccgacatg aggcggcttg acgaggcgct cgcgcccgac
     1501 aacgtggcgg gcgagcgcta caacgaagaa cgcatggcaa ccgtggacag gtaactcaaa
     1561 tgcagaaacg aattctcgga cgtgaacggc tcgaagtctc cgcgctagga ctcgggtgca
     1621 tggggatgag cgagttctat ggcacacacg acgacgacgc gtcgatcgcc acgatccacc
     1681 gtgcgatcga gctgggagtg acgttgctcg acactgcgga catgtacggt cctttcacga
     1741 acgagcagct tgttggaagg gcgattcatg atcgtcgcga caaggttgtg ctcgcgacca
     1801 agttcgggaa catgcgctcg gagtcgggtg cgtatctcgg catcaacggt tcgccggaat
     1861 acgtgcgcaa ggcgtgcgac gcgtcgctcc agcggctcgg cgtgaatcac atcgatctct
     1921 actaccagca tcgcgtcgat cccaaggtgc ccatcgagga tacagtggga gcgatggccg
     1981 acctcgtgcg cgagggcaag gtgcggcatc tgggcatgag cgaggccgcg ccggcaacgt
     2041 tgcggcgcgc caatgcggtg catcccatca cggcgttgca gaccgagtat tcactctgga
     2101 gtcgcgacgt ggaggatgag attcttccaa cctgccgcga gcttggtgtc ggcttcgtcg
     2161 cctacagtcc gctcggccgc ggctttctca ccggcaggtt caagagcgag agcgatcttc
     2221 ccgccgacga ctggcgccgc aacaacccgc gctttcaggg tgcgaacttc gacaggaatc
     2281 tggatctcgt gcggcacgtc gagcagctgg cgaagtcgaa gggctgcacg ccttcgcaga
     2341 tagcgcttgc gtggctgctg caccggggca acgacatagt gccgattccg ggtaccaagc
     2401 gcgtgaagta tctggaggag aacgtcggag cgctggacgt gacacttaca gcggcggaca
     2461 tgtcgcgaat cgacgcgatc gcgccgcgcg gagttgcggc gggcgagcgg tatccggaag
     2521 gagggatgag gtcggtgagt ttgtaggcgc acacgaaaga ttcgtcattc ccacgaacgc
     2581 tggctcaggg acccgtcatt cccgcgaaag cgggaatcca tctgctgccg agccgctctc
     2641 tgttgtcatc gcatccagag atcgataaca tggattcccg ctttcgcggg aatgacgact
     2701 cctgagccag cgttcgtggg aatgacgaat ctttcgtcag cgcctacaaa ctcaccgacc
     2761 tcatcccgcc ttccggatac cgctcgcccg ccgcgactcc gcgcggcgcg atcgcgtcga
     2821 ttcgcgacat gt
//
LOCUS       DATIMD010000346         5636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3024622, whole genome shotgun sequence.
ACCESSION   DATIMD010000346 DATIMD010000000
VERSION     DATIMD010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5636
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3024622"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..783)
                     /locus_tag="VLI40_07690"
     CDS             complement(<1..783)
                     /locus_tag="VLI40_07690"
                     /inference="COORDINATES: protein motif:HMM:NF012876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HSU97095.1"
                     /translation="MRLANRLLLSSLAIIIALTLTVAFILDRQLHRRLTTERTDELAR
                     EAQFVASQWTSAASAPELAHAAGRTLGHRVTLIRRDGVVLGDSQFDSAGVAGLQNHSG
                     RPEVITAFAGRVGTSRRLSPSEGDDEVYVAVPATLGAARVSQNTGSFDAIFKTALGDV
                     AFAGGAAAVVALLLAVVFARTVSRPVIELRDVARAIADGDLFRRPSMSAPGEIGDLAR
                     ALYSLSEQLGARLKALQSDEALVSAVVESLSEGVLAISARRTV"
     gene            complement(780..1511)
                     /locus_tag="VLI40_07695"
     CDS             complement(780..1511)
                     /locus_tag="VLI40_07695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU97096.1"
                     /translation="MISADDVKGAVTERILVVDDEPDIVALVAYHLARAGYGVSTAAT
                     GPEALAKASAESPALVVLDLMLPGMSGFDVIEKLRADPATANIAVLMLTARRDEPDRV
                     RGLVLGADDYLTKPFSPQELTLRVAAILRRLRAPAAEHGDILKVGTVWINRAAHEVTV
                     DGELIELTPTEYKLLLTLAERRGRVLARTLLLETVWEAAPDIQTRTVDMHVQRLRAKL
                     GASGDMIETVRGFGYRINSAAPRST"
     gene            1632..3308
                     /locus_tag="VLI40_07700"
     CDS             1632..3308
                     /locus_tag="VLI40_07700"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009166 - nucleotide catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HSU97097.1"
                     /translation="MLAPACRYLAFVAATTLLAPAGLRGIRPADAGCRPGASVSLRVA
                     ATTDVHGHIRGWDYYENRADPARGLSRAATIVDSIRSANRGKVALVDAGDMLQGTPLA
                     DIAARRSQTRRNPIVAAMNTMHYDAVAIGNHEFNHGVPYLDSVVAQAQFPLLAANVTR
                     AGQLHAYKSFTIVDRAGVRIGIVGATTPGSDLWDSSNLAKARMHIGDVVPAVRAAVKQ
                     ARDAGADVIVVVLHSGLDEPSSYDTVSTGVASENVAARVASEVPGIAALVYGHSHREN
                     PGQMIGTTLVIQPKNWATSVAVVNLPMTCGASGMWTSGPVTGSVIQSAKHPEEARVVS
                     AVRQAHRETVRYVNSVIGSTPDAWRADSARIAATGITGFILDVERRAANAELASTAAF
                     DLRSKLGPGPITVAQLAQLYPYDNTLRAVRISGTQLKQYLEFSSRYYATRADRSLVVD
                     TSVAGYNFDVVSGVDYTIDVSYPVGERVTTLTFRGRPVAATDSFTLALSNYRQAGGGG
                     YAMLQGAPLVYDRQQDIRQLLIDEVQRRHTLRESDYDKHNWSFVKPGTTH"
     gene            3305..3547
                     /locus_tag="VLI40_07705"
     CDS             3305..3547
                     /locus_tag="VLI40_07705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97098.1"
                     /translation="MTSSFLIFVDGNAVPATAGQTTFDAITDWQPDLAKLLGNTRSLS
                     DSRGLPIDPALPAYAGAIFRVVSARQPGTSDGNSPE"
     gene            3571..4614
                     /gene="add"
                     /locus_tag="VLI40_07710"
     CDS             3571..4614
                     /gene="add"
                     /locus_tag="VLI40_07710"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF013155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004000 - adenosine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0043101 - purine-containing compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HSU97099.1"
                     /translation="MNRASADDLRRMPKAELHCHLDGSLRPETMLDLAREHGITLPRD
                     DATALRRYMCADNVSDLGDYLHRFDTTISILQTASALERVAYELVEDASRDGLRYIEV
                     RNAPHLNIRAGLTVDEVIEATLRGLRRGERDFGTIARFITCSLRHWDPARSLEAAKAA
                     VRHMSAGVVGFDLAGAEAEFSAADHADAFAYARRHFLRVTCHAGEAAGPASIESAIFD
                     CNVSRLGHGVRAGEDPALLDYIRDCGITLEMCPTSNEQTHAVPSYGQHPLKRYLDSGV
                     RVTINTDSRLISGVTLTDEYARAVNELGMTIADLCHCVLNACEASFLPFAERQQLITS
                     VRADLARDWGYQS"
     gene            4611..5471
                     /locus_tag="VLI40_07715"
     CDS             4611..5471
                     /locus_tag="VLI40_07715"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004731 - purine-nucleoside phosphorylase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HSU97100.1"
                     /translation="MRPYGREAAHQAAATIKPLIGDITPSIAIILGSGLGGLVADVRD
                     HVTIPYGEIPGLPGVSVAGHAGQLVVGEIEGTKVAVFAGRFHAYEGHPLQLTAFPVRI
                     AHALGAHTLFVSNAAGGVNASFTAGDLMVIEDHLNLTFASPLTGAAEPGETRFPDMSN
                     AYDPVLRAELHASGSRLGMELRQGVYAMLPGPAYETPAEVRMLRTLGADAVGMSTVPE
                     VTVARMLGLRVAGVSCITNPAAGIEEVPLAHADVLETTTRVAAQFQALVRAFVGNTGQ
                     SALSSLGSKA"
BASE COUNT         1071 a         1802 c         1745 g         1018 t
ORIGIN      
        1 caccgtccgg cgagcgctta tcgcaagtac gccttcactc agcgattcca cgaccgcgga
       61 gacgagcgcc tcgtcactct gcaaagcctt gagccgcgca ccgagctgct cggacaggct
      121 gtacaacgcg cgcgccagat cgccaatctc tccgggtgcc gacatcgaag ggcggcggaa
      181 caggtcgcca tcagcgatcg cacgcgccac gtcgcgcagc tcgatcacgg gacgcgatac
      241 tgttcgcgcg aagacaactg cgagcaacag tgcaactaca gcggcggccc cgcctgcgaa
      301 agcgacatct cccagcgcag ttttgaagat cgcgtcgaac gagccggtgt tctgcgatac
      361 gcgtgcagcg ccgagcgtgg ccggcaccgc gacatagacc tcgtcgtcgc cttcggacgg
      421 acttaaccgg cgcgatgttc ccacgcggcc cgcgaacgcg gtgatcacct cgggccgccc
      481 cgagtgattc tgcaatccgg cgacgccagc cgagtcgaac tgcgagtcgc cgagcacgac
      541 gccgtcgcgg cggatcaacg tcactctgtg ccccagtgtt cttcccgcgg cgtgtgcgag
      601 ctcgggagcg ctggccgccg acgtccattg tgacgccacg aactgagcct cgcgcgccag
      661 ctcgtcagtg cgctcggtag tgagacgccg atgcagctgc cgatccagaa tgaacgcgac
      721 cgtcagcgtc agcgcgatta ttatcgcgag cgacgaaagc aggagccggt tggcgagtct
      781 cacgtgcttc gcggggcggc ggagttgatc cggtagccaa aaccgcgcac tgtttcgatc
      841 atgtctccgg acgcgccgag cttggcgcgg aggcgctgga cgtgcatatc gaccgtgcgc
      901 gtctgaatat ccggcgcggc ctcccacaca gtctcgagca acaaagtgcg cgcgagcacc
      961 cggccgcgcc gctccgcgag tgtcagcagc agcttgtatt ccgtaggagt gagttcgatt
     1021 agctcgccat caaccgtcac ttcgtgagcc gcgcggttta tccacacagt ccccaccttc
     1081 aggatgtcgc catgctccgc ggcaggtgcg cgaagccgcc gcagtatcgc ggccacgcga
     1141 agagtcagct cctgaggcga gaatggcttg gtgagatagt cgtcggcgcc aagcaccagg
     1201 ccgcgcaccc gatctggctc gtcgcgtcgc gccgtgagca tgagaacggc gatgttcgcc
     1261 gtggcgggat ctgcgcgcag cttctcgatg acgtcgaatc ccgacattcc cggcagcatg
     1321 agatcgagca cgacgagcgc cggcgattcg gcgctggcct ttgcaagcgc ctcgggcccc
     1381 gtagcggcgg tcgatacccc gtatccggcg cgcgcaagat ggtatgcgac cagggccacg
     1441 atatccggct cgtcatcgac gaccagtatc cgctccgtga ccgcaccctt gacgtcgtct
     1501 gcagatatca tgatcgccac gaaagttcgc tgcccgacca cgttggcggg agcgcagatc
     1561 tgtcacgaag ctgtatcaac ccgaatcaac ccgccgtttc gggtgatcgc cacccccgat
     1621 aaattattgt gatgttggca cctgcctgtc gctatctggc gttcgtcgcc gccacgaccc
     1681 tcctggcgcc agctgggctc cggggcatcc gtccggcaga tgcggggtgc cggcccggcg
     1741 caagcgtcag cctgcgcgtc gcagctacga ccgatgtgca cgggcatatc cgcggctggg
     1801 actactacga gaaccgtgcc gatcccgcgc gcggactctc tcgcgccgca acgatagtcg
     1861 actcgataag gagcgcgaac cggggcaagg tcgccctcgt cgacgcggga gacatgcttc
     1921 agggcactcc actcgccgat atcgctgccc gccgttcgca aacccggcgc aatccgatcg
     1981 tcgctgcgat gaatacgatg cactatgacg ctgtcgcgat cggaaatcac gaattcaatc
     2041 acggcgtccc gtacctcgac agcgtggttg cgcaggcgca attcccattg ctcgcggcga
     2101 atgtgactcg cgctggacag ctgcacgcgt acaaatcgtt caccatcgtc gaccgtgcgg
     2161 gcgtacgaat tggcatagtg ggcgccacca cgcccggctc cgatctgtgg gattcgagca
     2221 acctcgcgaa ggcgaggatg cacatcggag atgtggtacc ggcggttcgc gctgctgtga
     2281 agcaggcgcg cgatgccggc gcggacgtca tcgttgtggt gttgcattcg ggactggatg
     2341 agccgtcgag ctacgacacg gtgagcacgg gcgtcgcgag cgagaatgtc gcggcgcgcg
     2401 ttgcgtcgga agtacccggc attgcggcgc tggtatatgg acattcgcat cgcgagaatc
     2461 cgggacagat gatcgggaca acgcttgtca tccagccaaa gaactgggcc actagcgtcg
     2521 ccgtcgtgaa tcttccaatg acatgcggtg cgagcggaat gtggacgagc ggaccagtga
     2581 ccggctccgt gatccagagc gcgaagcatc ccgaggaggc tcgcgtcgtc agcgccgtac
     2641 gacaggcgca tcgcgaaact gtcaggtatg tcaattcggt gatcggttcc acaccggacg
     2701 cgtggcgcgc ggattctgcg cgaatcgccg cgacgggaat taccggcttc attctggacg
     2761 tcgagcgacg tgcggcgaat gcggaactgg cctccacggc agcgttcgac cttcgttcga
     2821 agctcgggcc cggcccgatc acagtcgcgc agcttgcgca gttgtatccg tacgacaata
     2881 cgcttcgcgc cgtccgcata agcggcacgc agttgaagca gtacctcgag ttcagcagtc
     2941 ggtattacgc gacacgagcg gatcgctccc tcgttgtgga cacatctgtc gcgggctaca
     3001 acttcgacgt cgtcagtgga gtggattaca cgatcgacgt cagttacccg gtcggtgagc
     3061 gagtcacaac gcttaccttt cgcggtagac ccgttgccgc gactgactcg ttcaccctgg
     3121 cattgagcaa ctaccgccag gcgggcggag gcggctacgc gatgcttcaa ggagcgccgc
     3181 tggtctacga cagacagcag gatattcgcc agctcctgat cgacgaggtg caacgcaggc
     3241 acacccttcg agagtcggat tacgacaagc ataactggtc attcgtgaaa cccggaacca
     3301 cacattgact tcttcattcc ttatcttcgt cgacggcaac gccgtacccg cgacagccgg
     3361 acagaccacg ttcgatgcaa tcaccgactg gcaaccggat ctggcaaaat tgcttggaaa
     3421 cacacgcagc ctttccgata gccgcggtct ccccatcgat cccgcactcc ccgcgtacgc
     3481 aggcgccatc tttcgtgtcg tgagcgctcg gcagcccggt acatcggacg ggaactcgcc
     3541 agagtgacgt cgcccaatac caaccagccc gtgaatcgag cttcagcgga cgacctccgc
     3601 cgcatgccca aggccgagct tcactgccat ctcgacggct cgcttcgccc ggagacgatg
     3661 ctcgacctgg cacgggagca cggaattact ctcccccggg acgatgcgac agcgctgcgc
     3721 cggtacatgt gcgcggacaa cgtctccgat ctcggcgact acctccatcg cttcgacacc
     3781 acaatctcca ttctgcagac cgcatccgca ctcgagcgcg tcgcgtacga gctggttgag
     3841 gatgcgagcc gggatgggct gcgttacatc gaagtgcgca atgcgcccca cctcaacatt
     3901 cgcgcgggac ttacggtcga tgaagtaatc gaagcgacgc tacgcggact gcgacgcggt
     3961 gagcgtgatt tcggaacgat cgcgcgtttt attacatgct cgctgcgtca ctgggatccg
     4021 gcccggtcac tcgaagccgc gaaggccgcc gtccggcata tgagcgccgg cgtcgtcggg
     4081 ttcgatctcg ccggcgcgga ggcagagttc tctgcagccg atcatgcaga cgcatttgct
     4141 tacgcacgca gacatttcct gcgcgtgacc tgccatgctg gagaggcggc tggaccggcg
     4201 tcgatcgaga gcgcgatctt cgattgcaat gtgtcccggc tggggcacgg cgtgcgtgcc
     4261 ggcgaagatc ccgcattgct cgactacatc cgcgattgcg ggataacgct cgagatgtgt
     4321 cccacgagca acgaacagac tcacgcggtg ccgagctacg ggcaacatcc gctcaagcgc
     4381 tatctcgatt ccggcgtacg cgtcacgatc aacaccgaca gccggctgat aagcggcgtc
     4441 acacttacgg acgagtatgc gcgagctgtg aatgagctgg gtatgacgat cgccgatttg
     4501 tgtcactgcg ttctcaacgc gtgcgaggcg tcgtttcttc cgttcgcaga gcgtcaacag
     4561 ctcataacat ccgtgcgtgc ggatctcgcg cgcgattggg gataccagtc atgagaccat
     4621 acggccgcga ggcagcgcac caggcggcgg caaccataaa gccgctcatc ggcgacatca
     4681 cgccctcgat cgcgatcata ctcggctcgg gactcggcgg cctcgtcgcc gatgtccgcg
     4741 atcacgtcac cataccgtat ggtgagatac caggactgcc cggagtaagc gttgcgggtc
     4801 acgccggcca gcttgtggtt ggagagatcg aagggacgaa agtagcagtc ttcgcgggcc
     4861 gctttcacgc ctatgagggt catccccttc agctgacggc ttttcccgtc cgcatagccc
     4921 acgcgctcgg cgcacatacg ctttttgtgt cgaatgcggc cggtggcgtc aatgcgagct
     4981 tcaccgccgg tgatctgatg gtgatcgaag atcatctcaa cctcaccttc gcgtcacctc
     5041 ttacgggcgc cgcggagccc ggcgagacac gattccccga catgtcgaac gcatacgacc
     5101 ctgtactgcg tgcggaattg catgcttcgg ggtcgcgcct cggaatggag ttgcgccagg
     5161 gtgtttacgc gatgctgccg ggccccgcat acgagacacc ggcagaagta cgcatgctac
     5221 gcacgctcgg cgcagatgca gtaggaatgt cgaccgtccc ggaagtcact gtggcgcgca
     5281 tgctgggact tcgtgtcgcg ggagtgagct gcatcacgaa tcctgcagct ggcatcgagg
     5341 aggtcccact tgctcacgca gacgttctcg agacgacgac acgcgtcgcc gcgcagtttc
     5401 aggcgctcgt gcgagccttt gtgggaaaca cgggtcagag tgcactttct tcactcggct
     5461 ccaaggcata ggctcggaaa gcgggaaacc gcacgccgag ccctggtcgc agggcgcagg
     5521 ctcggaaaag tgaactctga cccgagtttt gctatttcga gatcggcgcc gctgggagcg
     5581 atgccagtcg gtccttgaac gtgtgaaagt tcttggagtc cttggtgagc gatgcg
//
LOCUS       DATIMD010000347         2786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1871651, whole genome shotgun sequence.
ACCESSION   DATIMD010000347 DATIMD010000000
VERSION     DATIMD010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1871651"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..530)
                     /locus_tag="VLI40_07720"
     CDS             complement(<1..530)
                     /locus_tag="VLI40_07720"
                     /inference="COORDINATES: protein motif:HMM:NF015644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0182 family protein"
                     /protein_id="HSU97101.1"
                     /translation="MTRGQRLTAALALAAAILLVGRAAAIIYSDQEWFANLGALSVWD
                     AQVSNILWLYGVALVVGIAFAWVNVSAVRRSVVSLIVPKRLGNVEFGEEVPSTRLRAL
                     TAALSVGVAAISLAALPSWTTLALWRSNVTFAETDPYFTLDLSHFVTWLPLEIGMYQW
                     CLALFAITAILVVALYA"
     gene            complement(532..1896)
                     /locus_tag="VLI40_07725"
     CDS             complement(532..1896)
                     /locus_tag="VLI40_07725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HSU97102.1"
                     /translation="MNLVRDIFREYDIRGITGKELTPDVARVVGRAFAAFLDERGIRG
                     SVAVGRDNRPSGDGLHDALVAGLTESGVNVIDIGVVPTPVAYWAQHNLDVVAGIQITG
                     SHNPPEYNGFKLGVEKASIYGDDIQRIYQLASAGAFPSGAGNKRDEAVIDRYIDDIVN
                     RIGRISRPLRVAVDAGNGVGGLVAPTLLAKLGVDVTCMFCDSDGTFPNHHADPTVPEN
                     LEALINEMYKGGYDFGVAFDGDADRIGVVQQNGDIIWGDYLLLLYARDVLTRVRNAPI
                     IFDVKCSQALPEAIEKAGGVPVMWKTGHSLIEEKMHELHAPLAGEMSGHMYFSEGWYG
                     FDDALYGAARLLKIVADSGSSIHELLADVPRFVSTPEIRVNCPDDRKFGVVSDAVKYF
                     SARYSTNDVDGVRIQYPDGWGLIRASNTQPVIVLRFEARTRDQLDAIRDEIEGWLTQH
                     GVQI"
     gene            complement(1893..>2786)
                     /locus_tag="VLI40_07730"
     CDS             complement(1893..>2786)
                     /locus_tag="VLI40_07730"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HSU97103.1"
                     /translation="MLLIGIGLMLIGFGFKVALAPFHMWAPDVYEGAPTPITAYMAAA
                     VKAAAFAAFLRVFLEAFGGEIPSWHIAVWWLAAITMVVGNLIALASKDIKRLLAYSSI
                     AHAGYILVVLASGQALGSSAFLFYIVAYTLATFGAFGVVVALGQAGEPYLNVDDYAGL
                     WTSRPWLSVAMAVCMLSLLGFPIFGGAGFFAKWYVIQSALYAPEPQTRLAVLLVLTSV
                     ISAGYYMYVVLVMFMKPRRETNTVSDPRTVGSATRWVIGLSTVILLVLGVYPNALVSL
                     TQHKGSYLHAPAPQVSQVVPR"
BASE COUNT          571 a          860 c          863 g          492 t
ORIGIN      
        1 gcgtaaagtg caacgaccag gatcgctgta atggcgaaca gtgcgagaca ccactgatac
       61 attccgatct cgagcggaag ccatgtaacg aagtggctga gatccagtgt gaaatacgga
      121 tcggtctccg cgaaggtgac gttcgatcgc cacagtgcga gtgtcgtcca cgacggcaga
      181 gcggcgaggc tgattgccgc aacgccgacg ctcagcgccg cggtaagcgc gcgcagcctc
      241 gtcgacggaa cctcctcgcc gaattcgacg ttgccaagtc gtttcgggac gatcagcgag
      301 acgaccgatc tgcgcaccgc ggaaacgttg acccacgcga acgcgatgcc gaccacgagc
      361 gcgacgccgt acagccacag aatattggat acctgggcgt cccacaccga tagcgcgcca
      421 aggttggcga accactcctg gtcggagtag atgatcgctg cggcgcgacc gacgaggagt
      481 atcgccgcgg ccagggcgag ggcggcggtg agccgctggc cgcgggtcac tttagatctg
      541 aacgccgtgc tgcgtgagcc atccctctat ctcgtcacgg atcgcgtcga gctgatcgcg
      601 cgtacgtgcc tcgaaccgga gcacgatgac cggctgcgtg ttggacgcac ggatgagtcc
      661 ccacccgtcg gggtactgaa tgcgtacacc gtcgacgtcg ttcgtgctgt atcgtgcgct
      721 gaaatacttc acggcatcgc ttacgacgcc gaatttccgg tcgtcggggc aattgacgcg
      781 gatctccggc gtcgagacga aacgcggtac gtcggcgagc agctcgtgga tcgagctacc
      841 agagtctgca acgatcttca gcagccgcgc cgcgccatac agcgcgtcgt cgaaaccgta
      901 ccagccctcg ctgaagtaca tgtggccgga catctcgccc gccagcggtg cgtgcaactc
      961 gtgcatcttc tcttcgatga gcgagtggcc agtcttccac attacgggca cgccgccggc
     1021 tttctcgatc gcttcgggta gcgcctgcga gcacttgacg tcgaagatta tcggcgcatt
     1081 cctgacgcgc gtgagcacgt cgcgtgcata cagaagcagc agatagtcgc cccagatgat
     1141 atcgccgttc tgctgtacga caccaatccg gtcagcgtca ccgtcgaatg ccacgccgaa
     1201 gtcgtaaccg cccttgtaca tctcgttgat gagcgcttcg agattctcgg ggacggtggg
     1261 atcagcatgg tgattcggga acgtgccgtc gctgtcgcag aacatgcagg tgacgtcaac
     1321 gccgagtttc gccagcagtg tcggagcgac gagtccgccg actccgttgc cggcgtcgac
     1381 tgcgactcga agcgggcgcg atatcctgcc gatgcgattg actatgtcgt cgatgtaccg
     1441 gtcgatgacg gcctcatcgc gcttgtttcc agcgccgctc gggaatgcgc cggcgctcgc
     1501 gagctggtag atacgctgga tgtcatcgcc gtagatcgac gccttttcga caccgagctt
     1561 gaatccgttg tactcgggtg gattgtggga tccggtgatc tggatccctg cgacgacgtc
     1621 gaggttgtgc tgcgcccagt aggcgacggg tgtcggaacc acgccgatgt cgatcacgtt
     1681 cacgccgctc tcggtcaacc ccgcgaccaa cgcgtcgtgc agcccatcgc cactcggtcg
     1741 attgtcgcga cctacggcaa ccgatccgcg gattccacgc tcatccagga aagccgcgaa
     1801 cgcgcggccc acaacgcgcg cgacgtccgg tgtcagttcc ttcccagtga ttccacgaat
     1861 gtcgtactcg cgaaagatgt cgcgaacgag attcaccggg ggactacctg gctcacctgc
     1921 ggcgccggcg cgtgcaggta cgagcccttg tgctgtgtga gactgacaag cgcattggga
     1981 tagacaccga gcacgaggag aatcaccgtg gaaagcccga tcacccaccg agtcgcggat
     2041 cccacggtgc gtggatcgct taccgtattc gtctcacgcc gcggcttcat gaacatgacg
     2101 agcaccacat acatgtagta gcccgcggat atcacgctgg tgagcacgag cagcaccgcg
     2161 agacgggtct gtggctcggg cgcgtacagg gcggattgaa tgacgtacca tttggcaaag
     2221 aagccggcgc caccaaagat cgggaagccg agcagcgaca gcatgcagac ggccatcgcg
     2281 acgctgagcc acgggcgcga ggtccacagt cccgcgtaat catccacgtt gagatacggc
     2341 tcgccggcct ggccgagcgc gactacgaca ccgaaggctc cgaatgtggc gagcgtatat
     2401 gcaacaatat agaagaggaa cgccgaactt ccgagcgcct gccctgatgc aagcacgacc
     2461 aggatgtagc ctgcgtgcgc gatgctcgag taggccagca ggcgcttgat atccttcgat
     2521 gcgagcgcga tgagattgcc gacgaccatt gtgattgctg cgagccacca cactgcaatg
     2581 tgccagcttg gaatctcgcc gccgaacgct tcgaggaata cgcgcaggaa cgcggcaaac
     2641 gcagccgcct tgactgctgc tgccatgtaa gcggtaatcg gagtaggcgc gccctcgtac
     2701 acgtcaggcg cccacatgtg gaacggcgca agcgcgacct tgaagccaaa gccgatcagc
     2761 atgagaccga taccgatgag cagcat
//
LOCUS       DATIMD010000348         3579 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3311565, whole genome shotgun sequence.
ACCESSION   DATIMD010000348 DATIMD010000000
VERSION     DATIMD010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3579
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3311565"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..712)
                     /locus_tag="VLI40_07735"
     CDS             complement(<1..712)
                     /locus_tag="VLI40_07735"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HSU97104.1"
                     /translation="MNVEIVTIGDELLLGFTVDTNSGFLGRELASLGVTVARHTTCGD
                     DIGIIVQTLREAVNRTGAVITTGGLGPTADDMTVEAVAKLFDRELARDETIAQWLEQR
                     WVAYARKGPMPVSNYKQAMIPRGAEIIANPVGSAPGVLVTDDRGRWVATLPGVPREAR
                     AMFTESLRPRVAALAGEGNVIRSMTLRTTGVGESSIADTLGELGKGVNGLSLAFLPGV
                     AGVDLRLTSRDRSPADADT"
     gene            complement(773..1453)
                     /locus_tag="VLI40_07740"
     CDS             complement(773..1453)
                     /locus_tag="VLI40_07740"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HSU97105.1"
                     /translation="MNLPNAITVGRIAAAPLIGVLPFFPSSTIRYSAFALYVVAAVTD
                     YVDGHLARTRNSVTDTGRLLDPLADKLLLFATLIPMSILMAGRANWMAPLLDRSGEAS
                     HFAFMTPVGSVPLPWWVVLIIVSREVFMMLFRQAAARRGHVISAIGPAKWKTAFQSLW
                     VGSAFFWFGALTLANERGWDSSAWHAFAMFNGTVGALAMVTAVVLTLYSLWLYVRQYA
                     RVFAGQTH"
     gene            complement(1471..2148)
                     /locus_tag="VLI40_07745"
     CDS             complement(1471..2148)
                     /locus_tag="VLI40_07745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase domain-containing protein"
                     /protein_id="HSU97106.1"
                     /translation="MSMINYASREINCKIVYYGPGLGGKTTNLEFIYGKVKPDTRGKL
                     ISLATETERTLFFDFLPVDLGTIRGFKTRFHLYTVPGQVYYNASRKLILKNVDGVVFV
                     ADSQLDRSEANLESMQNLYDNMAEYGYDLTKMPFVIQYNKRDLSNAAPLQQLQESMNP
                     GWEVDDASRQILTPDHYHANENLTEQISTGEWVGRAPYFEAVAVQGDGVFDTLKAVSK
                     MVLKSLA"
     gene            complement(2155..2667)
                     /locus_tag="VLI40_07750"
     CDS             complement(2155..2667)
                     /locus_tag="VLI40_07750"
                     /inference="COORDINATES: protein motif:HMM:NF015232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HSU97107.1"
                     /translation="MMAGGSAKSGGSGTWSFTEDDSVAITHSLQRFLADTNSRSALLV
                     DRSGQLVATVGEQPTFDPTTFATLTAADFSANDQLAKLVGESDFSTLFHQGEKESIYL
                     ADVARRLILVVLFDNRTTLGLVRLRMKQAVQELTVVIDAIFSRAREEKPSRPNLLHGA
                     DAEIDELFNW"
     gene            complement(2678..2947)
                     /locus_tag="VLI40_07755"
     CDS             complement(2678..2947)
                     /locus_tag="VLI40_07755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97108.1"
                     /translation="MSKNRDWFIAGLLGGLVAGLATWSGAQHAYRRDLFSRHPVRRLA
                     ALGHLSGRPTVATAHLLREYIAWESRPMLRGRAVRLLKHVERALA"
     gene            complement(2968..3558)
                     /gene="recR"
                     /locus_tag="VLI40_07760"
     CDS             complement(2968..3558)
                     /gene="recR"
                     /locus_tag="VLI40_07760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HSU97109.1"
                     /translation="MSAIEDLATELSKLPGIGRKTAMRLTYHLLKQPAGQTRRLADAL
                     VTISERVHPCARCHNLTENELCSICADTRRDPALVCAVEEASDIGAIERAGEFRGTYH
                     VLGGRLSPLDGIGPEDLAVGDLEARVAAGGVRELIIATNPSIEGEATALYLQRRLASY
                     PLTVSRIARGLPVGGDLEYADGVTIAQALSARRVMQ"
BASE COUNT          706 a         1107 c         1079 g          687 t
ORIGIN      
        1 ccgtatctgc atccgctggt gagcggtctc tcgatgtgag gcgcaggtcg acgccggcga
       61 caccgggaag aaatgcgagc gacaatccgt tgacgccctt tccaagctca ccaagcgtat
      121 ccgcgatcga cgactcgcca acgccggtcg tgcgcaacgt catcgatctt atgacgttac
      181 cttcgccggc tagagccgcg acgcgcggac gcagcgattc cgtgaacatc gcgcgcgctt
      241 cacgcggaac tcccggcaac gtcgcgaccc agcggccacg gtcatcagta acgagaacgc
      301 caggcgcgga cccaaccggg ttcgcgatga tctcagcacc gcgcggaatc atcgcctgct
      361 tgtaattgct caccggcatc gggcccttgc gcgcatatgc gacccagcgc tgttcgagcc
      421 actgcgcaat tgtctcatca cgcgccagtt ctcgatcgaa cagcttggca acggcttcga
      481 ccgtcatgtc atcggcagtt ggaccgagtc cgccggtggt tatcaccgca ccagtgcgat
      541 tcacggcttc gcgcagtgtc tgcacgatga tgccaatgtc atcaccacac gtcgtgtggc
      601 gcgcgactgt tactccgaga ctggcgagct cgcggccgag gaagccgctg ttcgtgtcga
      661 cggtgaagcc gagcagcagc tcatcaccga tggttacgat ttcgacgttc aattgcagga
      721 ccggtcaatc gtaggatgtg ccgcgcgatt gttattcgtc gcggcgtact cgtcagtgcg
      781 tctggcccgc gaagacgcgc gcgtactgcc gcacgtagag ccacaatgag tacaatgtaa
      841 gcactacagc ggtgaccatg gccagcgccc cgaccgttcc gttgaacatc gcaaaggcgt
      901 gccacgcgct ggagtcccag cctcgctcgt tggcgagcgt cagtgcgcca aaccagaaga
      961 acgcgctccc gacccagagc gactggaatg cggtcttcca cttggccggt ccgatcgcgg
     1021 agatgacgtg cccccgccgc gcggcggcct gacggaagag catcatgaac acctctcggc
     1081 tcacgatgat gagcaccacc caccatggca gtgggacaga tccaaccggc gtcatgaagg
     1141 cgaagtgcga cgcctcgccg ctgcgatcca gcaatggcgc catccagttg gcccgtcccg
     1201 ccatgagaat gctcatcgga atgagcgtgg caaagagaag cagcttgtcc gccagcgggt
     1261 cgagcagacg gcccgtgtcg gttacgctgt tccgggtgcg ggcgaggtgt ccgtcaacgt
     1321 agtccgtgac tgcagccacg acgtacagcg cgaacgccga gtaccggatc gtggacgacg
     1381 gaaagaacgg aagcacccct atcaaaggag ccgccgctat tcgtcccacg gttatggcat
     1441 tcggaagatt catttccctt acgctgtccc ttacgctagc gacttcagca ccattttgct
     1501 gactgccttg agtgtatcaa acactccgtc gccctgaacc gcaactgcct cgaagtaagg
     1561 agcccgaccg acccattctc ccgtggagat ctgctcggtg agattttcgt tggcgtgata
     1621 gtgatcgggc gtgagaatct gtcgacttgc gtcgtcgact tcccagcccg gattcatgct
     1681 ttcctgaagc tgctgcaggg gcgcggcgtt tgaaagatca cgtttattgt actgaatgac
     1741 gaacggcatc ttggtgagat catagccata ttccgccatg ttgtcataca ggttctgcat
     1801 cgactcgagg ttggcttcgg agcgatccag ctgcgaatcg gccacgaaga cgacaccgtc
     1861 gacgttcttg aggatcagct tccggctggc attgtagtac acctggccgg gcacagtgta
     1921 gaggtggaaa cgcgtcttga atccgcggat ggtgccgagg tcgactggca gaaagtcgaa
     1981 gaagagcgtg cgctcggttt cggtcgcgag cgagatgagc ttgccgcgag tatcaggctt
     2041 gaccttgccg tagatgaact cgaggttggt ggtcttgccg cccagtccgg gaccgtaata
     2101 aacgatcttg cagttgatct cgcgggacgc gtagttgatc atcgacatcg cgcgctacca
     2161 gttgaagagc tcgtcgattt ccgcatctgc gccatgtagc agattcggac gagacggctt
     2221 ttcttcacgc gcgcgcgaga agatcgcgtc aatcaccaca gtcaattcct gaacggcctg
     2281 tttcattcgt agtcgtacga gccccagggt ggtacggttg tcgaagagga ccacgaggat
     2341 gagccggcgt gcaacatccg cgaggtagat ggattccttt tcgccctgat gaaacaaggt
     2401 gctgaagtcg ctctctccaa caagtttcgc tagctggtcg ttggcactga agtcggccgc
     2461 ggtaagcgtc gcgaaagtcg tcggatcgaa ggtcggctgc tcgccgacgg tcgccaccag
     2521 ctggcctgac cgatcgacca gtagcgccga gcgcgaattg gtatccgcca ggaatcgctg
     2581 gagggagtgg gtgatggcga cggagtcatc ttccgtgaac gaccatgtgc ctgacccgcc
     2641 tgactttgcg ctaccacctg ccatcattca tctccatcta ggccagagcc ctttcaacgt
     2701 gcttgagtag ccgcaccgcc cgtccccgaa gcatcgggcg ggactcccag gcgatgtatt
     2761 cgcgcagaag gtgggctgtg gcgacggtcg gccgaccgga cagatgcccg agcgccgcga
     2821 gtcgcctcac aggatgacga ctgaacaggt ctcttcggta cgcgtgctgc gcgccggacc
     2881 aggtcgcgag accggcgacg aggccgccaa gaagtccggc gatgaaccaa tcacgattct
     2941 tactcacgat tcttgctcat ttgaacgtca ttgcatgact ctccgcgccg agagagcctg
     3001 ggcgatcgtt accccatcgg cgtactccag atcgccccct acgggaaggc cgcgggcgat
     3061 ccgcgaaacg gtcaacgggt agctcgccag ccgacgctga agatacaacg ccgtcgcctc
     3121 gccctcgatg ctgggattgg ttgcgattat cagctcccgc accccgcctg cagctacccg
     3181 ggcctccaga tcgcccacag ccaggtcctc ggggccgatt ccatcaagag gggaaaggcg
     3241 tccgcccaga acatgatagg taccccgaaa ctcgcccgcc cgctcgatcg caccgatatc
     3301 cgacgcctct tccaccgcgc agaccagcgc gggatctcta cgcgtgtcgg cgcagatcga
     3361 gcatagctcg ttctcggtga ggttatggca ccgggcgcac gggtgtacgc gctccgaaat
     3421 cgttacgagc gcgtcagcga gcctgcgggt ctggccggca ggctgcttga gcaggtgata
     3481 cgtgagccgc atcgccgtct tgcggccaat tccgggcagc ttcgagagct cggtcgcgag
     3541 gtcttctatc gccgacactc agaacgggag cttgaacgg
//
LOCUS       DATIMD010000349         5507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_716274, whole genome shotgun sequence.
ACCESSION   DATIMD010000349 DATIMD010000000
VERSION     DATIMD010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5507
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_716274"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..546
                     /locus_tag="VLI40_07765"
     CDS             <1..546
                     /locus_tag="VLI40_07765"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSU97110.1"
                     /translation="MADDTIKFIEQVVGGPTLLMGMSDGGVVALLVAKKRPDLVKRLI
                     FVAAVFHHNGWEEGVLQPGAAPPEFMTEGYGKVSPDGKAHYAVIVKKLDAMHMSGPML
                     TVDDLKSIRCRTLAMFGDDDEVRLEHIIAFYRNVPDCELAIIPGTSHGLLVEKPRLCD
                     EIMLEFLTQNPVPTMAPRRRA"
     gene            599..1012
                     /locus_tag="VLI40_07770"
     CDS             599..1012
                     /locus_tag="VLI40_07770"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSU97111.1"
                     /translation="MSERQGAVEDEAAVRTMIESWAAAVRRKDYEGILRNHSSDIVMF
                     DVPLPFQSRGIEAYRKTWDSFFSHSKDPVPFDITEMSVTAGMDVAFAVATLHCAEPSA
                     DGKFKGLDVRLTVGLRKMNGRWMITHEHHSVPAAD"
     gene            1093..2043
                     /locus_tag="VLI40_07775"
     CDS             1093..2043
                     /locus_tag="VLI40_07775"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSU97112.1"
                     /translation="MSNTLTTIALAVVAMASVVPASANVVATPVVAVSSPRETFDVGM
                     LRVEHFGSPAHTPIIFIPALFCGSWQWQREIAALSDKYDIYALTLPGFDGRPRDTGGD
                     LMNRATSDISELIRTRNIDHPIIVGHSLGGTLAVLFAETRPHEARGIIAVEGGYPIAP
                     TLAAREQRVNASIAPYVGIDGSAFGSALRKNMLQYVITSKADVDSMERLAARSDPVAV
                     VQWMKAALLLDLTPQLHDVTIPLTEIVPFESTIDPYQGFASEAAKRAAYATWLAHVQN
                     SSVIMIDHSRHFVMLDQPAVFDRTLFAAIRKATTRPSGSA"
     gene            complement(1968..3575)
                     /locus_tag="VLI40_07780"
     CDS             complement(1968..3575)
                     /locus_tag="VLI40_07780"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU97113.1"
                     /translation="MNADAFVRAGRREWVGLGVIALPCLLYSMDLTVLDLAVPRISAD
                     LRPTSAQLLWIMDIYGFVLASCLIPMGTLGDRIGRRRLLLIGAASFGVASVIAAFSKS
                     AGMLIAARAALGVAGATLAPSTLSLIRNMFTDPKQRTFAIGVWITSYSAGGVIGPLLG
                     GVLLNHFWWGSVFLIGVPVMVLLLVLGPVLLPEFRDPSPRRIDLHSVLLSLAAVLLVI
                     YGIKQIAQGATSWWPTLSIASGLVIGVVFIRRQQTLADPLIDLKLFRIRTFSTALAAY
                     ALGTFVLFGFFLFTTQYLQLVLGFSPLRAGLWMLPTFGAFIAGSLLTPLVSRRIHRAQ
                     LLSAGLVVSAIGFWIVAGIGVTSGLVALVTGSTIYALGLSPVFTLTTDTIVSAAPPER
                     AGVASALSETGSELGGALGIAILGSIGTAIYRTGLAHSAPHGISVGASNAASSTLGAA
                     IAVAQRLPASVGTHLTGAAREAFIQSLDMTALICAVVALATAIALAILLRERPSPRRV
                     ASRHADPLGRVVAFLIAANKVRSNTAG"
     gene            complement(3572..4072)
                     /locus_tag="VLI40_07785"
     CDS             complement(3572..4072)
                     /locus_tag="VLI40_07785"
                     /inference="COORDINATES: protein motif:HMM:NF016139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF417 family protein"
                     /protein_id="HSU97114.1"
                     /translation="MQPNASATTFPTFAHASSADWRVDLIGAAGIRVLRYGLVLLLVT
                     WGGAKFTAFEAEAIRPLIAHSPFMSWLYPALGLRGASALLGVFEVTAGLLIATRRWFP
                     RVSGYASLAASGMFVVTLSFLFTTPGVLASTNPMGGFLMKDIMLLGAALYTSAEAFSA
                     DRGRVA"
     gene            4192..4839
                     /locus_tag="VLI40_07790"
     CDS             4192..4839
                     /locus_tag="VLI40_07790"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSU97115.1"
                     /translation="MDTYPAHDDAPLIDALKQRNEAAFVELIERYQSPLLRLALVYAG
                     SRAVAEEIVQDTWLGVLQGIEKFEGRSSFKTWLFRILVNRARTRAEREGRTMPFSALG
                     EKVLEPDEPAVPAERFLGPDDPQWPLHWASPPHAWGASPEEQLLMKETLDLVERAVTA
                     LPPAQREVITLRDVEEWTGEEVCNVLEISETNQRVLLHRARSRVRAVLERHFDRE"
     gene            4844..5092
                     /locus_tag="VLI40_07795"
     CDS             4844..5092
                     /locus_tag="VLI40_07795"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HSU97116.1"
                     /translation="MTTPAYQELTCKELVELVTDYLEDSLSTIERRRFDEHLSTCPFC
                     QIYLDQIRQTSHILGHLKEEEMPREAIETLLGHFRRWR"
     gene            5089..5505
                     /locus_tag="VLI40_07800"
     CDS             5089..5505
                     /locus_tag="VLI40_07800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97117.1"
                     /translation="MIKGRLTIPPPQGGLAVYRSSFRLGIACLVIARLPAVVRDNTLD
                     SEKLAQGGGNVAEFHSAHASQAGYRGSIIVDAGSGRQITLTLWRSEEEAEAARIALAP
                     VIQRVLVPLMATPSTLVGVGEVLFNDLSTPDQTQRL"
BASE COUNT         1155 a         1608 c         1690 g         1054 t
ORIGIN      
        1 atggcagacg acacgatcaa gttcatcgag caggtggtcg gtggtccaac tttgctcatg
       61 ggtatgagcg atggcggagt cgtggcgttg ctggtggcga aaaagcgtcc cgatctcgtg
      121 aaacgcctga tattcgtggc cgctgtattt catcacaacg gatgggaaga gggcgtcctg
      181 cagccgggcg cggcgccgcc cgagttcatg actgaagggt atggcaaggt ttcacccgat
      241 ggtaaggctc actacgccgt gatcgtgaag aagctcgacg caatgcatat gagcgggccc
      301 atgctgactg tcgatgatct caagagcatc cgctgccgga cgctcgcgat gttcggtgac
      361 gatgacgaag tacgcctcga acacatcatt gcgttttacc gaaacgtgcc cgattgcgag
      421 ttggcgatca tccctggaac ctcgcacggt ctgcttgtcg agaagccgcg gctgtgtgac
      481 gagatcatgc ttgagttcct gacgcagaat cccgtgccca ccatggcgcc gcgccgacgc
      541 gcgtgactgg aatggaacct gcgtcggatt cgcgaccatc gactcggagg aatttctgat
      601 gagtgagaga caaggtgctg ttgaagacga agcggcggtc cgcaccatga tcgaatcctg
      661 ggcagcggcc gtgcggcgca aggattacga ggggattctc cggaaccatt cttctgacat
      721 tgtaatgttt gacgttccgc tgccatttca atcccgcgga atcgaagcct acagaaagac
      781 ctgggattcg ttcttttccc attcgaagga tccggtccca ttcgacatta cggaaatgag
      841 tgttacggcc ggcatggatg tcgcatttgc cgtcgctacg ctgcattgcg cagagcccag
      901 cgccgatggc aaattcaagg gcctcgatgt tcggcttacg gtcggcctgc gcaagatgaa
      961 tgggcgatgg atgataacgc acgaacatca ttccgtgccg gctgcagact agagctatcg
     1021 gcgggcaggg tgcgcgcgag agatgccgct gcgcactcct tcgtagctgg cattcattga
     1081 atcgggagca ttatgagcaa cacgctcacc acgatcgcat tggcagtcgt tgccatggct
     1141 agtgtggttc cggcgtcagc caacgttgtg gctacgcctg tcgtcgctgt gtccagtccg
     1201 cgtgagacgt ttgatgtcgg aatgctgcgc gtcgaacatt ttggcagtcc ggctcacact
     1261 ccgatcatct ttatccctgc gctcttctgc gggtcctggc aatggcagcg tgaaattgcg
     1321 gcgctctccg ataagtacga catctacgct ctgaccctgc cagggttcga cggccgtccg
     1381 cgtgacaccg gcggcgatct gatgaatcgc gccacatccg acatatcgga gctgatcaga
     1441 acgcgaaaca tcgatcatcc aatcatcgtc gggcacagtc tcggcggcac gttggccgtt
     1501 ctctttgcgg agactcgtcc tcacgaagca cgcggtatca tcgcagtgga aggcggttat
     1561 cccatcgcgc ccacattggc cgcacgcgag cagcgtgtca atgcgagcat cgcaccatac
     1621 gtcgggatcg atggtagtgc gtttggtagc gcgttacgca agaacatgtt gcagtacgtg
     1681 atcacgtcca aggccgacgt tgacagcatg gaacgactcg ctgcccgcag cgaccccgta
     1741 gctgtcgtgc aatggatgaa agccgccttg ctgctcgatc tcacccctca attgcatgac
     1801 gtcacaatcc cgctgactga aatcgtgcca ttcgaaagca ccatcgatcc gtatcagggc
     1861 ttcgcgtcgg aggcggcaaa gcgcgctgca tacgcaacgt ggctcgcaca cgtgcagaac
     1921 agctcggtga taatgatcga tcattcgcgc cacttcgtga tgctggatca acccgctgtg
     1981 ttcgaccgaa ccttgtttgc agcgatcagg aaggcgacga ctcgcccgag cgggtcggca
     2041 tgacggctgg ctacacggcg agggcttggg cgctctcgta agagtattgc gagagcaata
     2101 gccgttgcca gagcgacgac agcgcagatc agtgcagtca tgtccagcga ctggataaat
     2161 gcctcccgtg ctgctccggt cagatgagtg ccgacgctcg ctgggagccg ctgggctacc
     2221 gctatggccg ctccgagcgt gctgctcgcc gcgttacttg cccccacgga aataccgtgc
     2281 ggagcggagt gtgccaggcc ggttcgatag atcgcggttc cgatgctacc caggattgcg
     2341 atcccgaggg cgccgccaag ttccgagcct gtttccgata atgcggaggc cacaccggcg
     2401 cgctccggtg gtgcggcact cacgatcgtg tcagtcgtca gcgtgaatac cggcgagaga
     2461 cccagcgcat agatcgtgga tccggttaca agagccacga gtccggatgt gacaccgatt
     2521 ccggcgacaa tccagaagcc gatcgcagac accaccaggc cagcactcag cagctgtgca
     2581 cggtgaatgc gacgcgacac gagcggagtc aacagcgagc cggcgatgaa cgcgccgaac
     2641 gttggcagca tccacaagcc tgcccgcaat ggcgagaacc cgagtaccaa ttggaggtac
     2701 tgtgtggtga atagaaagaa cccgaacagg acgaaggtcc ccagtgcata cgccgcgagt
     2761 gccgtgctga aagtgcgaat tctgaacagc ttcaaatcga tgagtggatc agccagtgtc
     2821 tgttgtcggc gaatgaacac gactccaatc acgagtccgc tcgcgatcga taaagttggc
     2881 caccagctcg tagctccttg cgcgatctgc ttgatcccat agatcacgag cagcacggcc
     2941 gccagtgaaa gcagtacact gtgcaggtcg atcctccgag ggctgggatc ccggaactcc
     3001 gggagcagca ccggtcccag cacgagcagc agcaccatca ccggcacgcc aatgagaaaa
     3061 accgagcccc accagaagtg attgagaagt acgccgccga gcagcggccc aatcacacct
     3121 ccagccgaat aactggtgat ccatacgccg atcgcaaaag tacgctgctt cgggtcggtg
     3181 aacatgttcc gaatcagtga cagcgtcgac ggtgcgagcg ttgcaccggc aacaccgaga
     3241 gctgcgcgcg ccgcgatcag catgccggcg ctcttcgaga acgcagcaat cactgatgcc
     3301 actccaaacg aagcggcacc gatgagcagc aaccggcggc gaccgatgcg gtcgccgagt
     3361 gtgcccatcg ggatcaggca gctggccagc acgaatccat agatgtccat gatccagagc
     3421 agttgcgcgc tcgtgggtcg gagatccgcg ctgatacgtg gcacagcgag gtccagcacg
     3481 gtcagatcca ttgaatagag caggcatgga agggcgatga cgccgaggcc aacccattcc
     3541 cggcgtcccg cccttacaaa tgcgtcggcg ttcatgcgac gcggcctcgg tccgcgctga
     3601 acgcttccgc ggaggtgtaa agtgctgcac cgagaagcat gatgtccttc atgaggaagc
     3661 cgcccatcgg gttggtcgat gccagtactc ccggtgtggt aaacaggaac gagagcgtga
     3721 caacgaacat gccactggcc gcgaggctcg cgtaccctga gacgcgtggg aaccatctcc
     3781 gtgttgcgat cagcaggccc gccgtcacct cgaacacccc gagcagcgct gaggcgccgc
     3841 gtagtcccag ggcgggatag agccacgaca tgaacggact gtgcgcaatg agcggtctga
     3901 tcgcctcggc ctcgaacgct gtgaacttgg ccccgcccca cgtcaccagt aacagaacca
     3961 ggccataacg gaggactcga atgccagcgg cgccgatcag gtcgacgcgc caatcggccg
     4021 aggatgcatg agcgaatgtt ggaaacgtgg tggcgcttgc gttgggttgc atcttgacct
     4081 ctccccgtgt gttgaatgtg tattgaatgt gtgacgtgct ctcaaagggt cttgtccgcg
     4141 agaggagctc agcgttacac tgccttcttc atttttcgac ggtcggtcat tttggatacg
     4201 tatccggcgc acgatgatgc accgctgatc gatgcactca aacagcgcaa cgaggcggcg
     4261 ttcgtggagt tgatcgagcg ctaccagagc ccgttgctcc ggctggcact tgtctacgcc
     4321 ggcagccgcg ctgtcgccga ggagatcgtg caggacacat ggctcggcgt gcttcagggc
     4381 atcgagaagt tcgagggccg gtcgtcgttc aagacgtggc tgttccgcat cctggtgaat
     4441 cgcgcacgca cgcgtgccga gcgggaaggc cggaccatgc cgttctcggc tctcggcgaa
     4501 aaggtgctgg agccagacga gcccgcagtc cctgcggagc ggtttctcgg ccccgatgat
     4561 ccgcagtggc cgttgcattg ggcgtcgccg ccgcatgcct ggggtgcctc accggaagaa
     4621 cagctgctca tgaaggagac gctcgatctc gtggagcgtg ccgttaccgc gctgccgccg
     4681 gcacagcggg aggtaatcac cttgcgggat gtggaagaat ggaccgggga agaggtgtgt
     4741 aacgttctgg agatcagcga gactaatcag agagtgctcc tgcaccgcgc gcggagtcgc
     4801 gtgcgcgcgg tactcgagcg ccacttcgac cgcgaatagg aatatgacaa cgcccgcgta
     4861 tcaggaactg acatgtaagg aacttgtaga gctcgtgacg gactatctcg aggatagctt
     4921 gtcgacgatc gagcgccggc gattcgacga gcacctgagc acgtgcccat tctgccagat
     4981 ctacctggac cagatacgcc agaccagtca catcctcgga catttgaaag aggaagagat
     5041 gccccgtgag gcaatcgaga ccctgctcgg gcatttccgt cgctggagat gataaagggc
     5101 cgccttacga tcccgccacc gcaaggtggg cttgccgttt atcgttcgtc gttccggctc
     5161 gggatcgcct gtcttgttat tgcgcggctt cccgcagtgg tgagagataa caccctcgat
     5221 tcggagaagc tcgcgcaagg cggcggcaat gttgccgagt tccattcagc acacgcctcg
     5281 caagccggtt atcgcggcag catcatcgtc gatgctggtt caggccggca gataacgctc
     5341 acattgtggc gctctgaaga ggaagccgaa gctgcgcgaa tcgcacttgc gccagtgatc
     5401 cagcgtgtgc tcgtcccgct tatggctacg ccatcgacgc ttgtcggtgt gggagaggtc
     5461 cttttcaatg atctctcaac gccagatcag acgcagcgtt tataacg
//
LOCUS       DATIMD010000350         7632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2444668, whole genome shotgun sequence.
ACCESSION   DATIMD010000350 DATIMD010000000
VERSION     DATIMD010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7632
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2444668"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            313..1638
                     /locus_tag="VLI40_07805"
     CDS             313..1638
                     /locus_tag="VLI40_07805"
                     /inference="COORDINATES: protein motif:HMM:NF014427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HSU97118.1"
                     /translation="MAPTDPPPAAIAITPSSPTVQLGAQLAMQAQVHDVSGQVVPDAA
                     IFWSAKDTNIVTVSQAGVVTGKSVGTTQIAASSNGQSAVVPVVVTPVAVASAAVAPTS
                     ASITVGGTVVLQGIAYDASGNTLPGRTVVWASSAPQVATVDAKGKVTGITAGTATITG
                     TIEGKTASSVITVGVIPVAAVAVTPGSAAINVGQSAALTAVTTDANGNTLTGRTITWS
                     SANTAVATVSASGLVTGVGAGSTTIRATSEGKTGTAQVAVTAPAPAPPTVASVTVSPS
                     STTLATGGTATLTATVKQSDGTVLTGRTVTWSSSASNVATVSNSGVVTAVAPGTATIT
                     ATSEGKSGTASVIVSAPSVASVSVDPSALTLTNNHPKTLTAKVLDANNHEITGRTITW
                     TSSDSSLVSVTKADATTATVMAVRHGVGVITITATCDRVSGRSVVTLAY"
     gene            complement(1672..2061)
                     /locus_tag="VLI40_07810"
     CDS             complement(1672..2061)
                     /locus_tag="VLI40_07810"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSU97119.1"
                     /translation="MSSRDLRVAAVTVLVGCVTALNACGDTRAASSLVPTGGDAARGK
                     TVIQHYGCNACHAIAGFPEPSVAVAAPITGIASRGYIAGTLPTTPGNLALWIRFPKKV
                     KPATAMPDLGVSESEARDVVAYLYSLR"
     gene            complement(2048..3259)
                     /locus_tag="VLI40_07815"
     CDS             complement(2048..3259)
                     /locus_tag="VLI40_07815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97120.1"
                     /translation="MMNGSAEGRTARWHSSTIAMRALFAGVIGLVLCILGLLDDPRRA
                     FAAYLFAYVTVLTLVLGALIQVMISHVTAARWFTVLRKLTLTVTTSLPLLAILVLPIL
                     FGVQRLYPWAHAATLSPALRKLAEHRQAWLNIPFFATRAVIYVIVFAACGEMLRRWAA
                     RENHVSRAGDVVMVLRRQRRASAIGLVVVGLTLTLVAFDWLMPLDTEWYSTVYGVYVF
                     AGGFVAALGLIALLAYLSARNGGALYGSVSDEHFGALGKLMLTFVIFWAYIAFSQFLI
                     IWIGDIPADSSWYAVRGSGSWGTLALIVVIGQFAIPFVLLLSRTLKRQPRVLAAIGVW
                     LVIMHVLDVYWLVLPAFDPSGIRLSWMDPAALLMVGGLAVASAARRVRGHVALPVNDP
                     YIAQAVHYVEP"
     gene            complement(3256..3789)
                     /locus_tag="VLI40_07820"
     CDS             complement(3256..3789)
                     /locus_tag="VLI40_07820"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSU97121.1"
                     /translation="MLCSGLACVAVIAMLVVAGCSERMGKGWDWNRMRTQPRYEPYRS
                     SSFFADGKAMQLPPAGTVSRESRTASALPVTINNRVIARGESQFHIYCAVCHGERGDG
                     ASLVAANMEQPKPPSLIAPPVALLPASVIATVIASGMGTMPSFAAELSPADRQAVAAY
                     VRTLQPAPARIGGTFTR"
     gene            complement(3795..4370)
                     /locus_tag="VLI40_07825"
     CDS             complement(3795..4370)
                     /locus_tag="VLI40_07825"
                     /inference="COORDINATES: protein motif:HMM:NF023249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3341 domain-containing protein"
                     /protein_id="HSU97122.1"
                     /translation="MSISMAPSGGGGRVLGEFTTAESMLAAVDALVREGYRTLETFTP
                     FDMPELDERLGLRRSRIGWLVAAGGFVGMVLAYGIQWWANVHDYPLNSGGRPVHAIPA
                     FLLATFEGTVLFAAFAAFFGLMIWLRLPKLWAPIDEVDGFGRASVDRFWIAVGTEAGG
                     AAAGGGARTAARAAEIMRGSGALHTVGPAAI"
     gene            complement(4367..5839)
                     /gene="nrfD"
                     /locus_tag="VLI40_07830"
     CDS             complement(4367..5839)
                     /gene="nrfD"
                     /locus_tag="VLI40_07830"
                     /inference="COORDINATES: protein motif:HMM:NF015851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrfD/PsrC family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HSU97123.1"
                     /translation="MTEATGDAAGRPGIRHRAVLVHPMTERAVERAAVEEFPVAYDLP
                     SDGPLTEQLLSPMWTSSHIWWPLFIISGLLVILFLYAMAVTFVRGIGAWGNNIPVAWA
                     YGITDFVWWIGIGHAGTFISAFLILLNQRWRASINRFAETMTLFALVNASLFPILHLG
                     RPWFFYWLVPYPATTGVWPNFKSSLPWDVAAISTYFTVSLLFWYLGLVPDLAAARDRA
                     PGLWRRRIYGVFALGWRGSSNEWRHYRVAYTLLAGLATPLVISVHSIVSLDFAITQLP
                     GWHSTIFPPYFVVGAIYSGLAMVLLLILPARRVFRLDNIITMAHLSNIAKLMLATGSM
                     LAYSYMCEAFMAWYSGDPYEHYTMLVARPLGPYAVVFWLMLFANVVTPQVFWWKRMRT
                     SVVALFIVSLFVFAGMWCERFIIIVGSLNRDFLPSSWHFYAPTWVDLSLLFGSIGLFC
                     FLFLAFLRWVPMVPVSEVKRLRFELLRGGSASRTGTGRVR"
     gene            complement(5820..>7632)
                     /locus_tag="VLI40_07835"
     CDS             complement(5820..>7632)
                     /locus_tag="VLI40_07835"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HSU97124.1"
                     /translation="DTLLILEGNPAYTAPADIAFRTALHKARSSLYLGLYANETARET
                     AWFVPSAHYLESWGDGRAYDGTASLVQPLIAPLYNGHTVAEVLALVAGETGVSAYDLV
                     RRSWSVASGMPSEVDSWWNEALVRGIIADTAAPSSAAVVRWDAVGSMHTRMIAQKARE
                     RIEINFAASRAVHDGRFADNGWLQELPDAVTKLTWDNAALMAPALATRLGVARGDEVE
                     LRLRDRAVKLPALIVPGHADDAVTLALGYGRSGAEAVARGVGANANLIRTSAAPFADT
                     DVVVTRTGAHRDLAITQEHWSLEGRGGDILGVTTASPSKPSVPRARAAEPAPPVRPRR
                     PLTLYEPPAPSTDGFGGDQWAMVIDLNTCTGCGACVVACQAENNIPVVGRDGVLKSRE
                     MHWLRIDRYVEGPPEEPRVSVQPMLCQQCEKAPCEYVCPVDATVHSDDGLNEMVYNRC
                     VGTRFCSNNCPYKVRRFNWFDYNGEIAETERMVKNPEVTVRARGVMEKCTFCVQRIRT
                     AQIDAQLANEPRTGPVVTACQQTCPTGAIIFGSLTDPSSDVVRLRDDPRCFSALDQLG
                     TVPRVRYLARVRTGETMASIEPGVEPGVEPGNDRSDG"
BASE COUNT         1550 a         2552 c         2256 g         1274 t
ORIGIN      
        1 ctagcatccc ctagcatccc ctagtcggcc cggcggtgcg gacggatccg caccgcaagt
       61 tccagcgata tgggcgcgag ttgtgcgtat agggagcccg tccctatccc tggccatgga
      121 tgagaattcc tgcagccaca gcacattcgt cagttcctta cagagcctgc ctcagaatac
      181 gttgggttgg gtagatcgat gctacatcgc cgtcagtttc aaccgttaca tacagatcgc
      241 cgtgctggag cgtttctcct acttgtaatc gctgtcggct ttctcgcatg cagtggcagt
      301 gcatcggatt cggtggcacc gacggatcct cctcctgcgg cgatagcgat aactcccagc
      361 tcgccgacgg tccagctcgg agcacagctc gccatgcagg cgcaggtgca cgatgtgagc
      421 ggtcaggtcg taccagacgc cgctatcttc tggtctgcca aggatacgaa catcgttacc
      481 gtatcgcagg ccggcgttgt aacgggcaag agcgtcggaa cgacgcagat cgcggccagt
      541 tccaacggcc agtcggcagt tgtcccggtt gttgtcactc cggtcgcagt tgcatccgcc
      601 gccgtggctc cgaccagcgc gtcgatcacc gtcggtggta cggtggtgct gcagggcatc
      661 gcgtatgacg ccagtggaaa tacgctaccg ggacgtaccg tcgtgtgggc gagctccgct
      721 ccacaggtcg caacggtcga tgccaagggc aaggtgaccg ggatcacggc aggcacggca
      781 acgatcaccg ggacgatcga aggcaagaca gcgtcgtcag tcataaccgt cggtgtgatc
      841 ccggtcgccg ccgtcgcggt taccccgggg tcggcagcca tcaacgtcgg ccagtcggca
      901 gctctgactg cggtcacgac ggatgcgaac ggaaatacat tgaccggccg cacgatcacg
      961 tggtcgtctg cgaatacggc ggtcgcgacg gtgagtgcaa gtggcctcgt gacgggcgtc
     1021 ggcgcaggta gcacaactat ccgtgcgaca tccgaaggca agaccggcac ggcgcaggtc
     1081 gcggttaccg cgcccgcgcc agcaccaccc accgtcgcgt cagtcaccgt cagtccgtcg
     1141 tcgacgacgc ttgcaacggg cggaacggcg acgctcaccg ctacggtgaa gcagtccgat
     1201 ggcacggtgc tcaccggacg cacggtaaca tggtcgtcca gcgcttcgaa cgtagcgacc
     1261 gtgtcgaaca gcggcgttgt cacggcagtc gcgccgggaa ccgcgaccat caccgcaacc
     1321 agcgaaggaa agagcggcac ggcatcggtg atcgtatcgg cgcccagcgt cgcgagcgtg
     1381 agcgtggatc cttccgcgct cacactgaca aacaatcacc ccaagacgtt gacggcgaaa
     1441 gttctagatg cgaacaacca tgagatcacg ggccgcacaa tcacctggac ctcgagcgac
     1501 agcagtctcg tctcggtcac caaagcggat gcaaccaccg caacggtaat ggccgtccga
     1561 catggagtcg gcgtcataac gatcaccgct acgtgcgatc gggtctcggg caggtcggtt
     1621 gtgacactgg catattagct tcgcgccgga attcgtaatt ccggctggcc gctacctcag
     1681 tgagtagagg tacgccacga catcccgtgc ctcgctctcg gacacgccga gatccggcat
     1741 cgccgtcgcc ggctttacct ttttcggaaa tcgaatccac agcgccaggt tgcccggtgt
     1801 agtcggtagc gtacccgcga tgtagccgcg actcgcaata ccggtgatgg gagcagctac
     1861 cgctaccgaa ggttcgggga agcccgcgat ggcgtgacac gcgttgcagc cgtagtgttg
     1921 aatcaccgtc ttgccgcgcg ctgcatcacc tccggtcggt acaagcgagc tcgctgcacg
     1981 cgtgtcgccg catgcgttga gagccgtgac gcaccccacg agcaccgtca ccgctgcaac
     2041 acgcagatca cggctcgaca tagtgcactg cctgcgcgat gtagggatcg ttcacgggaa
     2101 gcgctacatg gccacgaacc ctgcgcgccg cggatgcgac cgcaagccca ccgaccatga
     2161 gaagcgccgc aggatccatc cagctcaacc tgattcccga cggatcgaac gccggcagca
     2221 ccagccagta cacatcgagc acgtgcatga tgacgagcca caccccgatc gccgccagca
     2281 cgcgcggttg gcgcttgagg gtacgtgaca gaaggagaac gaacggaatc gcgaattgtc
     2341 cgatcacgac gatcagcgcg agtgtgcccc agctaccaga gccacgcacc gcgtaccacg
     2401 aagaatccgc cggaatgtcg ccaatccaga ttatcaggaa ctgcgagaac gcgatgtacg
     2461 cccagaatat gacgaatgtc aacatcagct tgccgagtgc gccgaagtgc tcgtcgctca
     2521 cggacccata cagtgcacca ccattccgcg ccgatagata tgccagcaac gcaatcagtc
     2581 ccagcgcagc gacaaatcca cccgcgaata cgtaaacacc gtatacggtg gaataccatt
     2641 ccgtgtccag cggcatgagc cagtcgaagg ccacgagcgt gagcgtcagg ccgaccacca
     2701 ccaacccgat tgcactcgcg cgccgctgcc gccgcaacac catcaccacg tcgccggcgc
     2761 gagacacgtg gttctcgcgc gcggcccagc gccgcaacat ctcgccgcac gcggcgaata
     2821 caatgacgta gatgaccgcg cgcgtcgcga aaaacggaat gttgagccat gcctgcctgt
     2881 gctccgcgag cttccgcagc gccggtgaca gggttgcggc gtgcgcccac gggtaaagtc
     2941 gctgcacgcc gaaaagtatc ggcagtacga gtatggcgag caacgggagc gatgtcgtaa
     3001 ccgtgagggt cagcttgcgc aataccgtga accatctggc cgcggtgaca tgactgatca
     3061 tcacctgtat cagtgcgcca agcaccagtg tgagcactgt cacgtacgcg aagagatatg
     3121 ccgcgaatgc gcgccgcgga tcgtccagca gtccgaggat gcacagcaca agccctatga
     3181 ctccggcgaa cagcgcccgc atcgcgatcg tggagctgtg ccagcgcgcg gttcgtcctt
     3241 cggcgcttcc gttcatcatc tcgtgaatgt cccgccgatg cgcgctggcg ccggttggag
     3301 cgttctgaca tatgcggcga cggcctgcct gtcagccggc gacagctccg ccgcgaacga
     3361 tggcatcgtc cccatgccgc tggcgatcac cgtggcaatg acgcttgctg gcaggagcgc
     3421 taccggcggc gcgatcagcg atggcggctt tggttgctcc atgttggccg ctaccaggct
     3481 tgcgccatcg ccccgttcac catgacacac tgcgcagtag atgtggaact gcgactctcc
     3541 gcgcgcaatc acccgattgt tgatcgtgac cggcagtgcc gatgcagtcc ggctctcccg
     3601 tgataccgtt cctgccggag gaagctgcat cgccttgcca tccgcaaaga agctgctgct
     3661 gcgatacggc tcgtacctgg gttgggtgcg catgcgattc cagtcccatc ccttccccat
     3721 gcgctcggaa cagccggcaa cgacgagcat cgcgatcacc gcgacgcatg cgagtccact
     3781 gcacaacacg cgattcatat cgccgccggt cccacagtat gcaacgcgcc ggagccgcgc
     3841 attatctccg cggcgcgcgc tgcggtgcgc gctccgccgc ccgccgccgc gccacccgct
     3901 tccgtgccaa ccgcaatcca gaagcgatcc accgatgcgc ggccgaaacc atcgacctcg
     3961 tcgatcggtg cccacaactt cggcagccgc agccatatca tcagtccgaa gaacgcggca
     4021 aaagcggcaa acagcaccgt gccttcgaac gtcgcaagca ggaacgcagg aatggcgtgc
     4081 acgggccgac cgccgctgtt gagcggatag tcgtgcacgt tggcccacca ctgtatgccg
     4141 tacgccagca ccattcccac aaagccaccg gccgctacga gccagccgat ccgcgagcgc
     4201 cgcaggccca gccgctcatc cagctccggc atgtcgaacg gtgtgaacgt ctccagtgtg
     4261 cgataccctt cacgcacgag tgcgtcgacc gcggcaagca tcgactccgc ggtcgtgaac
     4321 tcgccgagga cgcgtccgcc gccgcccgac ggcgccatcg agatgctcat cgcacccttc
     4381 ccgtgccggt gcgcgacgcc gatccgcctc gcaacagctc gaaccgcaat cgcttgacct
     4441 cgctgacggg aaccatcggc acccagcgca ggaaggccag aaacagaaag cagaacagcc
     4501 cgatgcttcc gaacagcagg ctgagatcca cccatgtcgg cgcataaaaa tgccagctgc
     4561 tcggcaaaaa gtcgcggttg agcgacccga cgatgattat gaatctctcg caccacatgc
     4621 cggcgaacac aaacagcgat acgatgaaca gcgcaacgac gctcgtccgc atgcgcttcc
     4681 accagaatac ctgcggcgtt acgacatttg cgaagagcat cagccagaac acgaccgcat
     4741 atgggcccag cggcctcgcc acgagcatcg tatagtgctc gtacggatca ccgctgtacc
     4801 acgccatgaa cgcctcgcac atgtagctgt acgcgagcat cgaccccgtg gcaagcatca
     4861 gtttcgcgat gttgctcagg tgcgccatcg tgatgatgtt gtccagccgg aacactcgtc
     4921 gcgcaggaag aatcagcaac agcaccatcg ccagccccga atagatcgcg ccgaccacga
     4981 aatacggcgg gaagatcgtc gaatgccacc cgggcagctg cgtgatcgca aagtcgaggc
     5041 tcactatgct gtgcaccgag atcaccagcg gcgttgcgag acctgcgagc agtgtgtacg
     5101 caacgcgata gtgtcgccac tcgttggagc ttccgcgcca gccgagtgca aagactccgt
     5161 agattctcct gcgccacagc ccgggcgcgc gatcccgtgc cgccgcgaga tccggtacga
     5221 ggcccaggta ccagaaaagc agcgatacag tgaagtacgt cgagatcgcg gcaacgtccc
     5281 acggcagcga gctcttgaag ttgggccaca ctccagtcgt cgcgggatac ggcaccagcc
     5341 agtagaaaaa ccacggccgc cccaggtgca gaatcgggaa cagcgacgca tttacaagtg
     5401 cgaacaacgt catcgtctcg gcgaatctgt tgatcgacgc gcgccagcgc tggttcaaca
     5461 gaatgaggaa ggcggagatg aacgtgcccg cgtgcccgat tccgatccac catacgaaat
     5521 cagtgatgcc gtacgcccat gctaccggaa tgttgttgcc ccacgcgccg atcccgcgca
     5581 cgaaggtcac cgccatcgcg tagagaaaca gaatgacgag caaccctgat atgatgaaca
     5641 gcggccacca gatgtgcgag ctggtccaca tcggcgacag cagctgctcc gtcagcggac
     5701 catcgctcgg caaatcatac gcgaccggaa attcctcgac cgcagcacgc tcgaccgctc
     5761 gctccgtcat cggatgcacg agcacggccc ggtggcgaat gccaggccga ccggccgcgt
     5821 cacccgtcgc ttcggtcatt gccaggttca acgccaggtt caacgccggg ttcgatggac
     5881 gccatggttt cgccggtgcg aacacgcgcc agatatctca cgcgtggcac tgtcccaagc
     5941 tgatcgagtg ccgagaaaca gcgtggatcg tcgcgcaacc gcacgacatc gctcgacggg
     6001 tcggtgagcg agccgaatat gatggccccg gtcgggcacg tctgctggca cgccgtcacg
     6061 acagggcccg tgcgcggctc gttcgccaac tgcgcgtcga tctgggcagt gcggattcgc
     6121 tgaacgcaga acgtgcactt ctccatgact ccgcgcgcac gaacggtcac ctccggattc
     6181 ttcaccatcc gctcggtttc tgcgatctcg ccgttgtagt cgaaccagtt gaaccgtcgc
     6241 accttgtacg gacaattatt cgagcagaaa cgcgtaccga cacagcgatt gtaaaccatc
     6301 tcgttgagcc cgtcgtcgct gtgcacggtc gcatcgaccg gacacacgta ctcgcacggc
     6361 gccttctcgc attgctggca caacatcggc tgaaccgata cgcgcggctc ctcgggcggc
     6421 ccctccacgt atcgatcgat gcgcagccag tgcatctctc tgctcttgag cacaccgtca
     6481 cgaccgacga cgggaatgtt gttctcagcc tgacatgcaa cgacgcacgc tccgcatccg
     6541 gtacacgtgt tgaggtcgat caccatcgcc cactgatcgc cgccgaaccc atccgtggac
     6601 ggagcgggcg gctcgtacag ggtgagtggt cgacgcggtc tgaccggcgg tgccggctcc
     6661 gctgctcttg cgcgtggcac cgacggcttc gatggcgacg cagtggtaac gcccagtatg
     6721 tccccgccac gaccttccag cgaccagtgc tcctgcgtaa tcgcgaggtc gcgatgcgca
     6781 ccggttcgcg tgacgactac atcggtatcc gcaaacggcg ctgctgatgt gcggatcaga
     6841 ttggcgttcg ctccgactcc gcgcgcgacg gcttcggctc cgcttctgcc atatcccagt
     6901 gcgagtgtca ccgcgtcgtc ggcatgacct ggaacgatca acgccggaag cttcacagcc
     6961 cggtcgcgca gcctcagctc gacctcgtcg ccgcgcgcga caccaagacg cgtggcgagt
     7021 gcgggcgcca tcagcgcagc gttgtcccac gtgagcttgg tgactgcgtc aggcagctcc
     7081 tgcagccagc cgttgtccgc gaagcggccg tcatgcaccg cccgactcgc cgcaaagttg
     7141 atctcgattc gttcgcgtgc cttttgcgca atcattctcg tgtgcatcga gccgacggcg
     7201 tcccatcgta cgactgccgc gctggacgga gccgctgtat cggcgatgat cccgcgaacg
     7261 agcgcctcgt tccaccagct gtcgacttcg gacggcatgc cggaagccac gctccacgag
     7321 cgtcgtacca ggtcgtacgc gcttacgcct gtctcacccg ccacgagcgc cagcacttct
     7381 gcaacagtgt ggccgttgta caacggcgcg ataaggggtt gtaccagcga cgcggttccg
     7441 tcgtacgcac gcccgtcgcc ccacgactcg agatagtgcg cactcggcac aaaccaagca
     7501 gtctcgcggg cggtttcgtt ggcgtacagg cccaggtaga gcgagctgcg agccttgtgc
     7561 aacgccgtcc gaaacgcgat gtccgcaggc gccgtatacg ccggattgcc ttccagaatc
     7621 aacaaggtgt cg
//
LOCUS       DATIMD010000351         4732 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2445002, whole genome shotgun sequence.
ACCESSION   DATIMD010000351 DATIMD010000000
VERSION     DATIMD010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4732
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2445002"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2202
                     /locus_tag="VLI40_07840"
     CDS             <1..2202
                     /locus_tag="VLI40_07840"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU97125.1"
                     /translation="DIKPENILLQNGHALVADFGIALAVEQAGGVRMTQTGLSLGTPQ
                     YMSPEQAMGDRHVDARADIYALGAVTYEMLAGEPPFTGPNGQAIIAKVITEDAPSLRA
                     HRRSVPPHVEAAVSHALEKLPADRFASARAFADALLTETAVALSTYRLDTHAHRGLRA
                     RLIAAWPWAAALLLSIALGTWGTLRSRDMHRNTVRFFVDLPHDDPQVQGIAFAPDASS
                     LVYAGPSELMLRSMSDLSVHRIPGTTGGTAPFFSPDGAWIGFIAEAKLKKVRISGGAT
                     VVIADSLETLGGAAWTPDGQIIFTGTNRGLATVSANGGRARIITSPAHGERHMWPDVL
                     PDGHGIVFTIWRRALQTAELAVATTDGKITRLGLHGVNAHYVDGHLVFAHEDGSLASV
                     PFDPATRRAGSEDHLANEVAVELVQVANPGAANYAVSASGSLVYVRGALPNQAVVVDR
                     AGTQRPLALEARTYARPRYSPDGRRVLFDTRVGAFGEIWLYDIGSATMQRLFAGDDAH
                     QPEWSPDGKRVAFTARNDSTDEDLFSMPLDGSAPPETVLAAPGDQYDATWTPDARSLI
                     FISDDPFQNFGIVRLDDRRPSKWLDAGTLGRSLLGPRISPDGHWIAYWSNQSGRDEVY
                     VRAFPEKGGVVQISSGGGTEPVWSHDGHELFYRQDDRLIAASLATRPGLIVTGRHLLF
                     AQRFETDGGHAYYDVSPDGKSFIFLKDTEAQAQLVVVLNWSDGLMQSSPKR"
     gene            complement(2251..3399)
                     /gene="dnaJ"
                     /locus_tag="VLI40_07845"
     CDS             complement(2251..3399)
                     /gene="dnaJ"
                     /locus_tag="VLI40_07845"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HSU97126.1"
                     /translation="MAQTKDFYGVLGVSSSASQDEIKKAYRKLAKQYHPDANANDPKA
                     AERFKEISEANNVLGDVEKRKQYDEMRRLGAFEGFSGARGGPPGGFSSGRPGAGPGAA
                     GFDFSNVDIGGLGGLGDLFSSIFNQSGRGPAGAGGRGRAPERGQSVETQVEVPFRTAV
                     TGGKIPVTLEVTEECQTCHGSGAAPGASMRICPECSGRGTVSFGQGGFAVNRPCPVCL
                     GRGQVPSQPCPTCNGSGEVRTRKKVMITVPPGSDSGTKVRLKGQGGRGANGGPAGDLI
                     VEFVVQPDRFFKREGLDLIASVPLNIAQATLGSRISVRTIDDKKVAIKIPSGTPSGKR
                     FRVRGQGVQKGNEKGDLIVEVTIAAPENLTEEQEKMMREFAEAGGLKY"
     gene            complement(3404..3970)
                     /locus_tag="VLI40_07850"
     CDS             complement(3404..3970)
                     /locus_tag="VLI40_07850"
                     /inference="COORDINATES: protein motif:HMM:NF013212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HSU97127.1"
                     /translation="MQNENSSEHEPDNLPAEDVGRQRSAPADQADQADLQAPGDTDEI
                     GPLEAQRDRYLRLAAEYDNYRKRTAKEAQQARTRGQGDLIKMLLDSLDDLSRFAHVDP
                     ATTDCMTLVTGVEMVERNVMKALASVGVEVIDPVELPFDPNLHEAVSTQAAETPDEDH
                     MVAQVYQRGYMLNGQLLRPARVVVKQYQ"
     gene            complement(3972..>4732)
                     /locus_tag="VLI40_07855"
     CDS             complement(3972..>4732)
                     /locus_tag="VLI40_07855"
                     /inference="COORDINATES: protein motif:HMM:NF014517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nicotinamide-nucleotide amidohydrolase family
                     protein"
                     /protein_id="HSU97128.1"
                     /translation="RTTGVGESAIADTLGELGKGVNGLSLAFLPGVAGVDLRLTSRDR
                     SPVDTDAALAEGARILREKLGDVIYGDDSASLASVVIDICRKSNVRIAVAESCTGGML
                     GAHITDVPGASDVFHGGLIAYDNRVKRQLLGVPDSDLVEHGAVSEPVALQMAKGIRVR
                     LGTEIGVSITGIAGPGGGTPEKPVGTVWIAVDVSEGRPPIPRPEGEPPITPYAKARVF
                     HFIGNRDEIRYRAAQAALDMIRRTVLDLPKTSAT"
BASE COUNT          827 a         1570 c         1448 g          887 t
ORIGIN      
        1 gacatcaagc ccgagaacat cctgctgcag aacggacatg cgctggtcgc cgacttcggc
       61 atcgcgctcg ccgtcgagca ggcgggcggc gtgcgcatga cgcaaacagg attgtcactc
      121 gggacgccgc agtacatgtc gcccgaacag gcgatgggag acaggcacgt ggacgcgcgc
      181 gcggatatct acgcactcgg cgcagtgaca tacgagatgc tggccggcga gccgccgttc
      241 acgggaccca acggtcaggc gatcattgcc aaggtgatca cggaagacgc gccgtcgctc
      301 cgcgcgcacc gacgctcggt gccgccgcac gtcgaagccg ccgtttcgca cgcgttggag
      361 aaactccccg ctgatcgctt cgcgtcagct cgtgcgttcg ccgatgcgct gctgacagag
      421 acggctgtcg cgctctccac ataccgtctc gacacgcacg cacatcgcgg attgcgcgca
      481 cggctcatcg ccgcgtggcc ctgggcagcc gcgctgctgc tcagcattgc tctggggacg
      541 tggggaacgc tccgcagtcg cgacatgcac cggaataccg tccgattctt cgtcgatctg
      601 ccgcacgatg atccgcaggt gcaggggatc gccttcgctc cggatgcatc ctcactcgtg
      661 tacgcagggc cgtcggagct catgctgcgc tcgatgagtg atctctccgt gcaccggatt
      721 cccggaacga cgggtggaac tgcgccgttc ttctcgcccg acggcgcgtg gatcggcttc
      781 atcgcggaag caaagctgaa gaaggtacgc atcagcggag gcgcaacggt cgtcattgcg
      841 gattcgctcg aaacgctcgg cggtgccgca tggacacccg acgggcagat catcttcacc
      901 ggaacgaatc gcgggctcgc aaccgtctcg gcgaacggcg gccgagcacg tatcatcacg
      961 tcacctgcgc acggcgaacg ccacatgtgg ccggatgttc tccccgatgg gcatggaatt
     1021 gtcttcacaa tctggcgacg tgcgctgcag accgccgagc tagccgttgc aaccactgac
     1081 ggaaagatca cgcgcctcgg actgcacggc gtgaatgctc actatgtcga cgggcacctc
     1141 gtgttcgcgc acgaggatgg ctcgctcgca tcggtccctt tcgacccggc gacacggcgg
     1201 gccggatcgg aagaccatct ggctaacgag gtcgcagtcg agctcgtcca ggtcgccaat
     1261 ccgggcgccg caaactacgc ggtctccgcg agcggttcgc tcgtgtacgt ccgcggtgca
     1321 ctcccgaatc aggccgtcgt cgtggatcgc gccggaactc agcgcccact cgcgctcgag
     1381 gcgcgcacgt acgcgcggcc gcgctattct cccgacggcc gtcgtgtcct gttcgatacc
     1441 cgcgtcggcg cgttcggcga gatatggctg tacgatatcg gctccgcgac gatgcagcga
     1501 ttgttcgctg gcgatgatgc gcatcaaccg gagtggagcc cggatggcaa gcgggtcgcg
     1561 ttcaccgcga ggaacgacag caccgacgag gatctgttct cgatgccgct ggacggcagc
     1621 gccccgcccg agacggtgct cgcggcgcca ggcgatcaat acgacgctac gtggacaccg
     1681 gatgcaaggt cactgatttt catctcggac gatccgtttc agaatttcgg aatcgtgcga
     1741 ctggacgaca ggcggccgtc gaagtggctc gacgcgggca ccctcggaag atctttgctc
     1801 ggacctcgca tctcgccaga cggccactgg atcgcgtact ggtccaacca gtcagggcgc
     1861 gacgaagtgt atgtgcgtgc attccccgaa aagggcggtg tggtccagat ttcctcgggc
     1921 ggcggcaccg agccggtctg gtcgcacgac gggcacgagc tgttctaccg gcaggatgac
     1981 aggctcatcg cggcgtcact tgcgacgcgt cccgggctca tcgtgaccgg ccggcatctg
     2041 ttgttcgcgc aacgcttcga aaccgatggt ggccacgcgt actacgacgt cagtccggat
     2101 ggcaaatcgt tcatcttcct caaggacacc gaagcgcagg ctcagctcgt cgtcgttttg
     2161 aactggagcg acggattgat gcagagttcg ccgaaacggt agaggggcaa gccgcgctca
     2221 tggcgcggac gtcgacatgc atcgaacgcg ctaatacttc agcccgcccg cctccgcaaa
     2281 ttcccgcatc atcttttcct gctcttccgt cagattctcc ggcgcggcga tcgttacctc
     2341 gactatcaga tcgcccttct cgttgccttt ctgcacgccc tgaccgcgca ctctgaaccg
     2401 cttgccgctc ggcgtgcctg atggaatctt gatcgcgacc ttcttgtcgt cgatcgtgcg
     2461 aacgctgatg cgcgatccca gcgtcgcctg tgcgatgttg agcggaactg atgcaatgag
     2521 atcgagccct tcacgcttga agaacctgtc cggctgcacg acgaattcca cgatcagatc
     2581 tccagcaggg ccgccgttcg caccgcggcc accctgaccc ttgaggcgca ctttggtacc
     2641 gctgtctgat cccgggggaa cggtgatcat cacctttttg cgagtgcgaa cctccccgct
     2701 cccgttgcat gtgggacacg gctgcgaagg aacctggccg cgtcccaggc agacagggca
     2761 cggccgattc accgcaaaac cgccctgacc gaacgaaacg gtcccgcggc ctgagcattc
     2821 cgggcagatg cgcatggaag cgcccggcgc agcaccgctg ccgtggcacg tctgacactc
     2881 ttccgtcact tcgagcgtca ccggaatctt cccgccggtc acggctgtac ggaacggcac
     2941 ctcgacctgc gtctcgacac tctggccgcg ctcgggcgcg cggccgcgac caccggcacc
     3001 cgctggccct cgccccgact gattgaagat cgagctgaac agatcgccca gccctccgag
     3061 accgccgata tcgacgttgc tgaagtcgaa tccggctgcg ccgggccctg cccctgggcg
     3121 accactcgaa aacccgccag gcggcccgcc acgggctccg ctgaacccct cgaatgcgcc
     3181 gagccgacgc atctcgtcgt actgcttgcg cttctcgaca tcgccgagga cgttgttcgc
     3241 ctcggagatc tccttgaatc gctccgcagc cttgggatcg ttggcgtttg cgtccggatg
     3301 gtactgcttg gcgagcttgc gataggcctt cttgatctcg tcctgcgagg cgctcgacga
     3361 gacgccaagc acaccgtaga aatccttcgt ctgggccacg tgcttactgg tactgtttga
     3421 cgactacgcg cgccggccgg agcagctggc cgttgagcat gtagccacgc tggtatacct
     3481 gcgcgaccat gtggtcttca tctggcgtct cggcggcctg cgtcgacacc gcttcgtgca
     3541 gattgggatc gaacggaagc tcgaccggat cgatcacctc gaccccgacg ctggcaagcg
     3601 ccttcatgac gttgcgctcg accatctcga cgccggtcac gagtgtcatg caatcggtcg
     3661 tggcagggtc gacgtgcgcg aatcgggaca ggtcgtccag cgagtccagc agcatcttga
     3721 tgagatcacc ctgtccgcgc gtgcgagcct gctgagcttc cttcgccgtg cgcttgcgat
     3781 agttgtcata ctctgctgcg agacgcagat accgatcgcg ctgggcctcc agcggaccga
     3841 tctcatccgt gtcgccggga gcttgcaggt cggcctgatc ggcttgatcg gccggcgcgg
     3901 aacgctgccg accgacatct tctgccggaa ggttgtcggg ctcgtgttcg gacgaatttt
     3961 cgttttgcat ttcaggttgc tgacgttttg ggcagatcca gaactgtacg acgtatcata
     4021 tcgagtgccg cctgcgcggc ccgatagcga atctcgtcgc gattcccgat aaagtggaaa
     4081 actcgtgcct tggcgtacgg agtgataggg ggctcgccct ccggacgcgg aattggcggc
     4141 ctcccttctg agacatcaac agcgatccaa acggttccta ctggtttttc aggagttccc
     4201 ccgccgggcc cggcgattcc tgtgatcgat accccgatct cagttccgag tcgcacccgg
     4261 atccccttgg ccatctgcag tgcgaccggc tcgctcacgg caccgtgctc caccaggtcg
     4321 gaatcgggaa cgccgagcag ctggcgcttc acccggttgt cgtaggcgat caggccgccg
     4381 tggaaaacat cgctcgcgcc gggtacgtcg gtgatatgcg caccgagcat cccgcccgtg
     4441 cagctttccg cgacggcgat gcgcacgttc gacttgcgac agatgtcgat cacaaccgat
     4501 gcaaggctcg cgctgtcatc gccataaatc acgtcgccga gtttttcgcg caggatccgg
     4561 gcgccttctg caagcgccgc atctgtatcg accggcgagc ggtctctcga tgtgagacgc
     4621 aggtcgacac cggcgacacc gggaagaaat gcgagcgaca atccgttgac gccctttcca
     4681 agctcaccaa gcgtatccgc gatcgccgac tcaccaacac cggtcgtgcg ca
//
LOCUS       DATIMD010000352         2298 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2445052, whole genome shotgun sequence.
ACCESSION   DATIMD010000352 DATIMD010000000
VERSION     DATIMD010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2445052"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            197..346
                     /locus_tag="VLI40_07860"
     CDS             197..346
                     /locus_tag="VLI40_07860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97129.1"
                     /translation="MIRKLKSGEYRLYSKKTDPKTGKRRNLGTFHTRAAAEKHERDVQ
                     YFKRH"
     gene            382..855
                     /gene="msrA"
                     /locus_tag="VLI40_07865"
     CDS             382..855
                     /gene="msrA"
                     /locus_tag="VLI40_07865"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HSU97130.1"
                     /translation="MTATATFGAGCFWGTQAAFQKIPGVIATAAGYEGGTKPNPTYEE
                     VCSHATGHAEVVQLEYDPALVSYDTLLDVFWNNHNPTTLNRQGPDVGTQYRSAIFYHD
                     EEQKELAERSRQILSGSGRFKQPVVTQIVPASTFWVAEDYHQSYLGKHGMESCHV"
     gene            902..1726
                     /locus_tag="VLI40_07870"
     CDS             902..1726
                     /locus_tag="VLI40_07870"
                     /inference="COORDINATES: protein motif:HMM:NF013431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HSU97131.1"
                     /translation="MTRESGNGEDAVTLVHPSGASARITHHGAHVVTWIDASGKERLY
                     LSPRAQFGPGQAIRGGIPVIFPQFGTGPLPKHGLLRTRRWSMIAHLGSSATFRITDDE
                     QTRALWPYPFMAELTVELAEMLTVSLMITNSGDSPFSFTAALHNYLAVDDVQQSSVQG
                     LQGLVYVDKMSAGARCVEEASELRLHGETDRIYISGPRQITITSAIGSSSTVVGADGF
                     GDWVVWNPWKDGSASLADMDPEGYLEMLCVEAARISDPVVLDPGAAWCGTEVIGAT"
     gene            1759..>2298
                     /locus_tag="VLI40_07875"
     CDS             1759..>2298
                     /locus_tag="VLI40_07875"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSU97132.1"
                     /translation="MHPTRTDATVLVIDDEPEIRHVVHSALRSTVARVLDAADGRSAL
                     AMVKAQTPDLIVLDLGLPDQSGLDLCRAIRAHSLAPIVVLTARHIESDKVALLNAGAD
                     DYVTKPFSTSEFAARVAAQIRRARTARPGTSGAVEADGMSVNFTSRHAHRDGKPVRLT
                     PIEWAILRALTADPGRVYTH"
BASE COUNT          495 a          716 c          654 g          433 t
ORIGIN      
        1 cactgacgtt ttcgaatggc gtacgactcg ccgtacagca ttcggatgca atgaaagcat
       61 tgcgattgct ggaaaacgaa gcagagtagg tacgggcagg cccccgtgcc tgcccacagt
      121 acgacgaggg catcctcaca catcctttca ctggactgat ccttgccaat tcatacctcc
      181 tgaacaggga ggaatcgtga tccgcaagct caaatcaggc gagtaccgcc tgtactcgaa
      241 aaagaccgat ccaaagaccg gcaaacgacg taatcttggt accttccata cacgcgcagc
      301 cgccgagaaa cacgagcgcg atgtgcagta cttcaagcgg cattaataat ttgaacgatc
      361 gttcgatcga tggagtttga gatgactgcc acggcaactt tcggtgccgg atgcttctgg
      421 ggaacacagg ccgcctttca gaagattccc ggtgttattg ccacggccgc tggctacgag
      481 ggtggcacca agccaaatcc tacctacgaa gaagtctgca gccacgccac cggacatgcc
      541 gaagtggtac agctcgagta tgacccggcg ctggtgagct acgacacgct tctcgacgtc
      601 ttctggaaca accacaatcc gacaacgctc aatcgccagg gaccggatgt cggaacgcag
      661 tatcgctccg cgatcttcta tcacgatgaa gaacagaagg agctggccga gcgatccagg
      721 cagatcctct ccgggagcgg ccggttcaag caaccggtcg tcacccagat cgttcccgcc
      781 tccaccttct gggtcgccga agactatcac cagagttatc tgggaaagca cggcatggag
      841 agctgccacg tctgatagcg ccgctgttcg gaattccggg cgggctcctg agtaatctcc
      901 tgtgacgcgc gagtccggga acggagagga tgccgttaca ctcgtccatc catcaggagc
      961 ctccgctcgc atcacgcacc atggcgccca cgtcgtaacc tggatcgacg cgagcggcaa
     1021 ggaacgattg tacctcagtc ccagggcgca gttcggaccc ggtcaggcga tccgcggtgg
     1081 cattccggtc atctttccgc agtttgggac cggtcccctc cccaaacacg gattgctccg
     1141 gacgcgccgc tggtccatga tcgcgcacct cggctccagc gccaccttcc gcatcaccga
     1201 cgacgaacag accagagcgc tctggccata cccgttcatg gcggagctga cggtagagct
     1261 cgccgagatg ctgacagtat cgctgatgat caccaactcc ggtgactccc cgttttcatt
     1321 cacggcggca ctccataact atctagccgt tgacgacgtc caacaatcgt cagtccaggg
     1381 actccagggc ctggtgtacg tggacaagat gtcggcgggc gcccgctgtg tcgaagaagc
     1441 gagcgagctt cgactccacg gggaaaccga ccgtatatat atctccggcc ctcgccagat
     1501 aacgatcacg tcggccatcg gatccagctc cacggtcgta ggtgcggatg gcttcggtga
     1561 ctgggtggtc tggaacccct ggaaggatgg atccgcgtca ttggctgaca tggaccctga
     1621 gggctacctt gagatgttgt gcgtggaggc ggcacggata tccgatccgg tggtattaga
     1681 tcccggagcc gcatggtgtg ggactgaggt catcggcgct acctgaacta gccagctggc
     1741 tgggattcgc acatggtcat gcatccaaca agaacagacg caacggttct tgtcatcgat
     1801 gacgaaccgg aaattcgtca cgtcgtacac tctgcacttc gctcaactgt cgcgcgagta
     1861 ctcgacgctg cggacggacg cagtgcactg gcaatggtca aggcacaaac accggatctc
     1921 attgttctgg atctcggtct cccggatcaa tccggattgg atctctgccg agcgattcga
     1981 gctcactcgc tcgcgcccat cgtcgtgctc acggcacgtc acatcgaatc cgacaaggtg
     2041 gcgctcctca acgccggcgc cgacgactac gtgacaaagc cgttcagcac ttcggaattt
     2101 gccgcgcgcg tcgctgcaca gatccggcgc gcgcgaactg cacgcccggg cacgtcgggc
     2161 gctgtcgaag cggacggcat gtcggtgaac ttcacctcgc gccacgcgca tcgcgacggc
     2221 aagcctgtgc ggctcacacc aatcgaatgg gcgatcctgc gcgcacttac cgcggacccc
     2281 ggacgcgtgt acacgcat
//
LOCUS       DATIMD010000353         1504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2158097, whole genome shotgun sequence.
ACCESSION   DATIMD010000353 DATIMD010000000
VERSION     DATIMD010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2158097"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1344
                     /locus_tag="VLI40_07880"
     CDS             <1..1344
                     /locus_tag="VLI40_07880"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HSU97133.1"
                     /translation="VKAFPEYLRAAGYYTTNNVKTDYQFGSPITIWDELSDKAHWRNR
                     PDKRQPFFSVFNIMTTHESMVFPGVLKGRKPVTDPSQVVVPPYYPDTPKVREGLAQWY
                     DNIARMDTEVGALLRQLDEDGLADSTVVFFWSDHGDGLPRGKRSLYDSGLRSLLMVRW
                     PKSMKPPFAPGSVNQQLVSFLDLAPTVLSIAGVPIPLHMQGRVLFGPKAQPAPKYIFA
                     ARDRMDVEYDMMRSARDERYLYIHNFQPELPYVGFIPFRNESPIMQELVRMQAEGSLE
                     GPAALWMRRSRPPEELYDVQSDSNQIHDLSADPAHRAVLERMRGAVDDWMKRIDDQGL
                     INEPEMIQRMWPGGVQPLTAAPFILKRGSRNWQHPTRDSVQTFSGPTEVEIYVPTQGA
                     SIAYTTDTSPNARWQLYAGPFALRGPTTIRAKAIRYGYKESAETRASFVAGTAAH"
BASE COUNT          270 a          501 c          497 g          236 t
ORIGIN      
        1 gtaaaggcgt tccccgagta tctgcgcgcg gcgggctact acaccacgaa caacgtcaag
       61 acggactacc agttcggctc tccgatcacc atctgggacg agctgagcga caaggcgcac
      121 tggcgcaatc gccccgacaa gcgccagccg ttcttctccg tgttcaacat catgaccacg
      181 cacgagtcga tggtgttccc gggcgtgctc aaggggcgca agccggtgac cgacccgtcg
      241 caggtcgtgg tgccacccta ctaccccgac acgcccaagg tgcgtgaggg gctcgcgcag
      301 tggtacgaca acatcgccag gatggatacc gaggtcggag ccctgctccg gcagctcgac
      361 gaagatggac tggccgacag caccgtcgtg ttcttctgga gcgatcacgg cgacggattg
      421 ccgcgcggga agcgctcact ctacgactcg ggactgcgct cgctgctcat ggtgcgctgg
      481 ccgaagtcga tgaagccgcc cttcgccccg ggctcggtca accagcagct cgtcagcttc
      541 ctcgatctgg ccccgacggt gctgtcgatc gccggcgtgc cgatcccgct ccacatgcag
      601 gggcgcgtgc tgttcgggcc gaaggcacag cccgcgccga agtacatctt cgccgcgcgc
      661 gaccggatgg acgtcgagta cgacatgatg cgctcggcgc gcgacgagcg atacctctac
      721 atccacaact tccagcccga gctgccgtac gtcggcttca ttcccttccg caacgagagc
      781 ccgatcatgc aggagctcgt gcggatgcag gccgaaggct cgctcgaggg accggccgca
      841 ctgtggatgc gacgctcgcg tccccctgaa gagctgtacg acgtgcagtc ggattcgaac
      901 cagatccacg acctttcggc ggatcccgcg catcgggccg tgctcgagcg gatgcgcggc
      961 gccgtggacg actggatgaa gcgcatcgac gatcaggggc tgatcaacga gccggagatg
     1021 atccagcgca tgtggccggg cggcgtgcag ccgctcactg cggcgccgtt catcctgaag
     1081 cgcggatcgc gcaactggca gcatccgacg cgcgacagcg tgcagacctt ctccggcccg
     1141 acggaagtgg agatctacgt gccgacgcag ggcgcgtcga tcgcgtacac gacggacacg
     1201 tcgcccaacg cgcgttggca gctctacgcg ggcccgttcg cgctgcgcgg tccgacgacg
     1261 atccgtgcca aggcgatccg ttacgggtac aaggagagcg cggagacacg cgcgagcttc
     1321 gtggctggca ccgccgcgca ctaggatggg agctcgcgcc gcgctgaccg acgagcgacg
     1381 ttgggcgcac gttatacagt attcgctcgc tgtatgagac gcgggcgacg cctgggccga
     1441 gcgcgtaacg cgtcgatcgg tctcgcgatg actggtgccg ttccggcgga tcgcagaaag
     1501 gaca
//
LOCUS       DATIMD010000354         2265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2446056, whole genome shotgun sequence.
ACCESSION   DATIMD010000354 DATIMD010000000
VERSION     DATIMD010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2446056"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..284)
                     /locus_tag="VLI40_07885"
     CDS             complement(<1..284)
                     /locus_tag="VLI40_07885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97134.1"
                     /translation="MTIGRRVVARVIAPLAVLGAIPFAACATGTGFGSQASAPVSGVP
                     QADTAGITLLPPGYGSLRQDDLSLHIDAGTVLVRALPLDEALIRLLTPDS"
     gene            complement(281..898)
                     /gene="yihA"
                     /locus_tag="VLI40_07890"
     CDS             complement(281..898)
                     /gene="yihA"
                     /locus_tag="VLI40_07890"
                     /inference="COORDINATES: protein motif:HMM:TIGR03598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HSU97135.1"
                     /translation="MASPDPLVIRSLEFVGGLASIGGWRPELDLPEIAFAGRSNVGKS
                     SLLNKLLKRRSFARVSKTPGRTREINFFKVNDAFLLADLPGYGYAKVSKSRSADWGPL
                     IESYLRGTRQLRGVVQLLDVRHDPTEDDRQMLDFLADVTVPVMFVATKTDKLSQAAAA
                     RRVQELAIMLQVDEDHIIPFSAQTGAGRDELAEAIAGLLAPEATA"
     gene            complement(907..>2265)
                     /gene="lon"
                     /locus_tag="VLI40_07895"
     CDS             complement(907..>2265)
                     /gene="lon"
                     /locus_tag="VLI40_07895"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: protein motif:HMM:TIGR00763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HSU97136.1"
                     /translation="LCLVGPPGVGKTSLGRSIARALGRKFVRMSLGGVRDEAEIRGHR
                     RTYIGSMPGRVIQAMRKAEVVNPVILLDEIDKLGLDYRGDPAAALLEVLDPEQNSAFN
                     DHYLEVDYDLSQALFVTTANSLATIPDALRDRMEIIRVPGYLDQEKLAIARKYLVPRE
                     LEANGLDASEVKLDADVLPAILRSYTREAGVRELDRQIAKLARKLARRQAEANDGGVI
                     ASQHVAAADLHSMLGVERYDADLASLEDKVGVARGLAYTTAGGETLEIEVSVVRGRGK
                     ISLTGTLGDVMKESASAAMSYVRGRADELGVAADFYRTRDIHIHIPDGATPKDGPSAG
                     IAIATAVASALTGIPVRGDLAMTGEITLRGRVLPIGGLKEKSVAAHRNHVVDVIIPHA
                     NARDLEELPQEVREAIRFHPVRTMDEVLKLALRSASPDAAAATTTRKRARGQAVATVS
                     AH"
BASE COUNT          417 a          771 c          672 g          405 t
ORIGIN      
        1 tacgaatccg gcgtcaacaa tcgaatcagc gcctcgtcca gcggcagcgc gcgcaccaga
       61 acggttccgg cgtcgatgtg cagcgagaga tcatcctgcc gcagcgatcc gtagcccggt
      121 ggaagcagag ttatgccggc agtgtcagcc tgtggtacgc ctgacaccgg tgctgaagcc
      181 tgcgaaccga agccggtgcc ggtcgcgcac gccgcgaacg ggatggcgcc aagcaccgcc
      241 agcggcgcta tcacccgcgc gacgactcgc cggccgatcg tcaagcagtc gcctccggtg
      301 caagcaatcc cgcaatcgcc tccgccagct cgtcccgtcc cgcgcccgtc tgcgcgctga
      361 acggaatgat gtgatcctcg tccacctgca gcatgatcgc cagctcctgc acccgccgag
      421 ctgccgcggc ctgcgacaac ttgtcggttt tggtggccac gaacatgacc gggacagtca
      481 catctgcaag aaagtccagc atctgccgat cgtcttccgt cggatcatgc cgcacgtcga
      541 gcaactgaac cacaccgcga agctgcctgg tgccgcggag atacgactcg atcaacggac
      601 cccagtcggc cgatctcgac tttgacacct tcgcatatcc gtaaccggga agatcggcga
      661 gcagaaacgc gtcgttcacc ttgaagaagt tgatttcacg cgtgcggcca ggcgtcttgc
      721 tgacgcgtgc gaaactgcgc cgcttgagca gcttgttcaa cagcgatgat ttgccgacgt
      781 tggaccgccc tgcgaacgcg atctccggca gatcgagctc cggtcgccat ccaccgatgc
      841 tcgcgagtcc gccaacgaac tcgagcgacc ggatcacgag cggatcaggg gatgccatca
      901 cagtcactag tgcgcgctca cggtcgcaac tgcctgaccg cgcgcgcgtt tccgtgtggt
      961 ggttgcagcc gccgcatcgg gcgacgcact ccgcagcgcg agcttgagca cttcgtccat
     1021 cgtcctcacc ggatgaaagc gaatcgcttc acgcacttcc tgtggcagct cttccagatc
     1081 gcgcgcgttg gcgtgcggaa ttatcacgtc gacaacatgg ttccgatgtg ccgcgaccga
     1141 tttctccttg agtccgccga tcggtagcac gcgtccgcgc agcgttatct cgcccgtcat
     1201 ggctagatcg ccgcgcacgg gaatcccggt caacgcgctc gcaacggccg tcgcgatcgc
     1261 gatgccggca ctcggtccgt ccttgggcgt cgcgccatcc ggaatatgaa tgtggatgtc
     1321 acgcgtgcga tagaaatcag cagcgacacc cagctcgtcg gcacggccgc gcacgtagct
     1381 catcgccgcc gacgcggact ccttcatcac gtcgccgagc gtaccggtga gcgatatctt
     1441 accgcgtccg cggaccacac tgacctcgat ttcgagtgtc tcgccgccag cggtggtgta
     1501 cgccaacccg cgcgcgacgc cgaccttgtc ttcgaggctc gcgagatccg cgtcgtagcg
     1561 ctcgacgcca agcatcgagt gaagatcggc ggcggcaacg tgctgtgatg cgatcacgcc
     1621 gccgtcgttc gcctccgcct gacggcgcgc gagcttgcgt gccagcttcg cgatctgccg
     1681 atccagctcg cgcacaccgg cctcacgtgt gtacgatcgc agaatggcgg gcaatacatc
     1741 agcgtcgagc ttgacttcgc tcgcatcgag accgttcgcc tccaactcgc gcggaacgag
     1801 atacttgcgt gcgatcgcga gcttttcctg atccagatat cccggtacgc gaatgatttc
     1861 cattcggtcg cgcagcgcgt cgggaatcgt cgcgagcgaa tttgcagtcg tgacgaacag
     1921 agcctgcgac agatcgtaat cgacctcgag atagtggtcg ttgaacgccg aattctgttc
     1981 agggtccagc acttcgagca gcgctgccgc gggatcgccc cggtaatcca gaccaagctt
     2041 gtcgatctcg tccagcaata tcacggggtt caccacctcg gccttccgca tggcctgaat
     2101 cactcggccc ggcatcgacc ctatgtaagt gcgtcgatgt ccgcggatct ccgcctcgtc
     2161 gcgcacgccg cccagcgaca tgcgcacgaa cttgcggcca agcgcacgcg cgatggagcg
     2221 accgagtgac gtcttgccga cgcccggagg gccgacgagg cagag
//
LOCUS       DATIMD010000355         3475 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_138360, whole genome shotgun sequence.
ACCESSION   DATIMD010000355 DATIMD010000000
VERSION     DATIMD010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3475
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138360"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1313)
                     /locus_tag="VLI40_07900"
     CDS             complement(<1..1313)
                     /locus_tag="VLI40_07900"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU97137.1"
                     /translation="MLRSQLSNESDRKIDQLLGSIAATVGRSASGTAAGLRAEGRLIL
                     LLIAITAVLAVLLAFFVNIMHARNVRAQRRMTEELENQSLQLQIQANELTATNRELES
                     ATTEMLRQTVEAERSEMRLAGILGSATDAVVSFDDDERIVYFNAAARRLFGIDEALLP
                     GARIRTAVADRSSLAFEEHMLAARRSAHIGEANPEVWDTVVVRPGDDEIPVEVSMAYA
                     RTGKQGLFTAVLRDVSRQRQFEEEFRQAQKMEAVGRLAGGIAHDFNNLLTVIGASSDF
                     LLHDLRGQSSSLSADVREIKAATNRAASLTRQLLAFSRRQLVQPQLLDLNAVVREMET
                     MLRRLIGENMTLATSYSDDIGLVKLDRGQLEQIVVNLVVNARDAMPDGGTVSVCTGTA
                     TADTNGIPGECVTLSVADSGVGMDEQTRARIFEPFFTTKEQGKGTG"
     gene            complement(1359..1730)
                     /locus_tag="VLI40_07905"
     CDS             complement(1359..1730)
                     /locus_tag="VLI40_07905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97138.1"
                     /translation="MLRLSLRPNVVAAYLSALMVCAMGWLVYQRLDGAESVTAQSRSA
                     LATMDAVRSLDGSMRDANLAERDLVVTNDPRYAGVYAAASDGTIRALAALRETSAPYP
                     GVASRLDSLGYFVHLRLGELD"
     gene            complement(1798..2568)
                     /locus_tag="VLI40_07910"
     CDS             complement(1798..2568)
                     /locus_tag="VLI40_07910"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF011412.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HSU97139.1"
                     /translation="MHPHAKPASTGTTPRIDSDDHQHDKLHVAIIMDGNGRWATARGR
                     PRTSGHVVGARVVRTIVESAEDAGIGALTLYAFSADNWKRPTREVSMLMRLFRRYLLS
                     EMDRCVQNGVRMRIIGRRDRIPPELRRTAEMAEETTRAGTRLDLRIALDYSARDAMVM
                     AAERAGGRALTRDSFTRLMNEVTHAGPVRDVDLLIRTGGEQRLSDFLLWECAYAELYF
                     TDVMWPEFSPADLLAAVREFHARDRRYGGVQESVAAAG"
     gene            complement(2572..2985)
                     /locus_tag="VLI40_07915"
     CDS             complement(2572..2985)
                     /locus_tag="VLI40_07915"
                     /inference="COORDINATES: protein motif:HMM:NF024988.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HSU97140.1"
                     /translation="MAKTGRARSKAHSQANAPASAGHAAPTPLAPINGRAVDAVPAAL
                     DRLIHERLRLGIVSALAVNDVLSFNELKTLMQTTDGNLSVHARKLEDAHYITCTKTFE
                     GRVPHTQYSLTTTGRSALARYLDHMEALIRATRER"
     gene            complement(2978..>3475)
                     /locus_tag="VLI40_07920"
     CDS             complement(2978..>3475)
                     /locus_tag="VLI40_07920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97141.1"
                     /translation="AVSGWGMVIVGFMAVAASFIASAQPSTSRWLDVWLALAAAGIVV
                     QLWAMLAKARASGVPLLSGPGRKFVLAVSPPLLAGAVLTIVLHRAGMTAVLPGLWLLL
                     YGAAVAAGGAFSVEIVPVMGLCFLAAGALALFTPLAWNDWILAIAFGGFHIAFGIPIA
                     RRYGG"
BASE COUNT          636 a         1124 c         1113 g          602 t
ORIGIN      
        1 cccgtgccct tcccctgctc cttggtggtg aagaacggct cgaagattcg cgcgcgcgtc
       61 tgctcatcca ttccaacacc ggagtcagcg acagacagcg tcacgcactc tccgggaatt
      121 ccgttcgtat cggccgtggc ggtcccggtg cacacgctga cggtaccacc atccggcatc
      181 gcgtcgcgcg cgttcacgac caggttcacg acgatctgct cgagctggcc gcggtcgagc
      241 ttcaccaggc cgatatcgtc ggagtagctg gtcgcgagcg tcatgttctc accaatcagg
      301 cggcgcagca tcgtctccat ctcgcgcacg accgcgttga gatcgagcag ctgcggttgc
      361 accagctgtc gccggctgaa cgcgagcagc tggcgtgtga gcgacgctgc gcgattggtc
      421 gctgccttga tctcgcgcac gtcggctgac aacgagctgg actgcccgcg caggtcgtgc
      481 agcaggaagt cactcgatgc gccaatcacc gtgaggagat tgttgaagtc gtgcgcgatt
      541 ccgccggcga gtcgtccaac cgcttccatc ttctgcgcct gacggaactc ttcctcgaac
      601 tgtctctggc gcgacacgtc gcgcaacacg gcggtgaaga gtccctgctt tccggtacgc
      661 gcgtacgcca tcgagacttc gaccggaatc tcatcgtcac ccggacgaac aacgacggtg
      721 tcccagactt cggggtttgc ctcgccgata tgcgcggagc gacgcgctgc cagcatgtgc
      781 tcctcgaacg cgagcgagct gcgatccgca acagcagtgc ggatgcgcgc accgggaagc
      841 aacgcttcgt cgataccgaa cagacgtcgt gcagccgcgt tgaagtagac gatccgctca
      901 tcgtcgtcga acgaaacgac ggcatcggtc gcggagccca gaattcccgc caggcgcatc
      961 tcactgcgct ccgcctcgac ggtctgccgc agcatctccg tcgtcgcgga ttcgagctcg
     1021 cgattcgtcg cagtgagctc gttggcctgg atctgaagct gcagcgactg attctcgagc
     1081 tcctccgtca tgcgccgctg tgcgcgaacg ttgcgcgcgt gcatgatgtt cacgaagaag
     1141 gcgagcagca ccgcgagcac tgcggtgatg gcaatgagca gaagtatcaa tcgaccttcc
     1201 gcgcgcagac ctgcagccgt tcccgaagca ctgcggccca cggtcgccgc gatggatccg
     1261 agcaactgat cgatctttcg atcggattca ttgctgagct gggatcgcag cacgtccgct
     1321 gccgcctttg cacctccgtc gcgtcgcagc cgaacggtct aatccagctc gcccagccgc
     1381 agatgaacga agtatccgag cgagtccaga cgcgacgcca cgcccggata tggtgctgag
     1441 gtttcgcgca acgcggccag agcgcgtatg gtgccgtccg aggcagcggc gtacacgcca
     1501 gcgtaccgtg gatcgttcgt gactacgaga tcgcgctccg ccagattggc gtcgcgcatg
     1561 cttccgtcga gcgaacgcac cgcgtccatc gtggccagtg cgctgcgcga ctgtgcggta
     1621 accgactctg ctccgtccag ccgctgatag acaagccacc ccatcgcgca gaccatcagc
     1681 gcggacaggt aggctgccac gacattcggg cggagtgaca gtcggagcat gaacgtgatc
     1741 ttagcgcttc acgcgcgatc atgccaccgc ggcgggcgta aggattccgt tacataatca
     1801 gcccgcggcc gctacagact cctgcacccc gccgtatctg cgatcgcgcg cgtggaactc
     1861 gcgtacagcc gcgagcaggt ccgccggtga gaattccggc cacatgacat cggtaaagta
     1921 gagctcggcg taggcgcatt cccagaggag aaagtcgctg agccgctgct cgccgccggt
     1981 ccggatcagc agatcgacgt cacggacggg ccccgcatgg gtgacctcgt tcatgagcct
     2041 cgtgaagctg tcacgcgtga gtgcgcggcc gcccgcacgc tcggcggcca tcaccatcgc
     2101 gtcccgcgcg gagtagtcca gagcgatgcg aaggtccaga cgtgtgccag cgcgagtcgt
     2161 ttcctccgcc atttctgcag tacggcgcag ctcgggcggt atccggtcgc gccgtccgat
     2221 gatccgcatg cgaacgccgt tctggacgca acgatccatc tcggagagca ggtagcgcct
     2281 gaacaggcgc atcagcatgc tgacctcgcg cgtgggacgc ttccagttgt cggccgaaaa
     2341 ggcgtacagc gtgagtgcgc cgatgcccgc atcttcggcg ctctcgacga tggtgcgcac
     2401 gacacgcgcg ccaactacgt ggccggaagt ccgtggccgg ccgcgggcgg tcgcccagcg
     2461 tccgtttcca tccatgatga tggccacgtg cagcttgtcg tgctggtggt catcggagtc
     2521 gatgcgtggt gtcgttcccg ttgatgccgg cttcgcgtgt ggatgcactg gctagcgttc
     2581 ccgcgttgcg cgaatcagcg cttccatgtg atccaggtac cgcgcgagcg ccgatcttcc
     2641 ggtggtcgtg agagaatact gcgtatgagg cacgcgtcct tcgaatgtct tggtgcaggt
     2701 gatatagtga gcatcctcga gcttcctggc atgaacgctc aggttgccgt cggtggtctg
     2761 catgagtgtc ttgagctcgt tgaagctgag cacgtcgttg acggccaggg cgctgacgat
     2821 cccgagccgc aaccgctcgt gaataagacg atcgagcgcg gccggaacag cgtccacggc
     2881 gcggccgttg atcggcgcga gtggtgtcgg cgcagcgtga ccggccgaag ccggcgcgtt
     2941 ggcctgcgag tgcgccttgg agcgggcgcg tcctgtctta gccaccgtac ctccgcgcga
     3001 ttggaattcc gaaagcaatg tgaaaacctc cgaacgcgat ggcgagaatc cagtcattcc
     3061 acgcgagcgg tgtgaataga gcgagagcgc cagcggccag gaagcagagg cccatgaccg
     3121 gaacgatctc gacagagaat gcgccgccag ctgcaaccgc ggcaccatat agaagaagcc
     3181 agagaccggg cagtaccgcg gtcattcccg cgcggtgcag cacgatcgtg agaaccgcgc
     3241 cggccaggag cggtggtgag acggccagca cgaacttgcg ccccggcccc gaaagcagcg
     3301 gaacgccgga ggcccgcgcc ttggcaagca tcgcccagag ctgaacgacg attcccgcgg
     3361 cggcgagcgc gagccagaca tcgagccagc ggctcgttga cggctgagcg gaagcgatga
     3421 aggaggctgc gacggccatg aagccgacga tgaccattcc ccatccggaa acggc
//
LOCUS       DATIMD010000356         1733 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3027509, whole genome shotgun sequence.
ACCESSION   DATIMD010000356 DATIMD010000000
VERSION     DATIMD010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3027509"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VLI40_07925"
     CDS             complement(<1..508)
                     /locus_tag="VLI40_07925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97142.1"
                     /translation="MGRTRRRLLAAVPLLLCLAATTAHAQQEQLFQNSWFWGLHAGST
                     AIGTPARSTTQAGTIGAEWMITRTDGGLYVSYDQASFSRMAGVADQSASNGVRPVELH
                     DLRTVSIGGVAFPWHSGRFRPYAGLGYALSLVGSADIQADSLNTAVPSGLRQSVDDAR
                     SRSSVFALA"
     gene            complement(522..>1733)
                     /locus_tag="VLI40_07930"
     CDS             complement(522..>1733)
                     /locus_tag="VLI40_07930"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: protein motif:HMM:NF005394.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008890 - glycine C-acetyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HSU97143.1"
                     /translation="YKMINKNFVSSLQASIQQLKDEKVYKQLNYLESPQSAHVQMEGR
                     GDVLILSSNNYLGFCDEPDVVEAGIKGLQTFGAGTGSVRFICGTFTVHRELESALAKL
                     VGTAASLTYVSAWNANEGLTASIAQEGDFVISDALNHASIIDSMRLAKSITKCTTGVY
                     AHSDMDDLRTKLRGASSARRRIIWTDGVFSMEGSIAKLPEILDIARKHDAIVVMDDSH
                     ATGVLGKTGRGTAEHFGVLGEVDIITSTLGKALGGAAGGFVAGAAALCDTLTQRSRPQ
                     LFSNALPPTVASSALASVNFLTSHPDRVKQLRDNASYFRGAIKEAGFKPLPGETPIVP
                     IIVGETSAAIRMSDMLLAQGVFVTGFGFPVVPQGEARVRCQISASHSRDDLDRAVAAI
                     TSVGRQLRIIS"
BASE COUNT          332 a          530 c          543 g          328 t
ORIGIN      
        1 cggcgagcgc gaataccgag ctgcggctgc gcgcatcatc cacgctctgg cgcaatcctg
       61 atggcacggc agtgttgagc gagtctgcct gaatatccgc gctaccgacc aggctcaatg
      121 cgtaaccgag ccccgcgtac ggacggaagc gtccggagtg ccacggaaag gcgacgccgc
      181 caatcgatac agtccggaga tcgtgcagct cgacaggtcg cactccattg gacgcgctct
      241 gatcggctac gccggccatg cgcgagaagc tggcctggtc atacgatacg tacagtccgc
      301 cgtcggtccg cgtgatcatc cactcggcgc cgattgtgcc ggcctgagtg gtcgaacggg
      361 cgggagtgcc aatcgccgtg ctaccggcgt gcagccccca gaaccacgag ttctggaaca
      421 gctgctcctg ctgcgcatga gccgtcgtgg ccgcgaggca gaggagtaag ggaacagcgg
      481 ctagcaagcg acgacgagtg cggcccatta agactcctgc attatgagat gatccgcagc
      541 tgcctcccca ctgaggtaat cgcagcaacg gcgcgatcca gatcgtcgcg ggagtgcgag
      601 gcgcttatct gacagcgcac ccgcgcctcg ccctgcggca cgaccggaaa gccaaagcct
      661 gtgacaaaga cgccttgggc cagcaacatg tcactcatgc gtatggccgc ggacgtctct
      721 ccaacgatta tcggcacgat tggcgtctca cccggaagcg gtttgaaccc tgcctccttg
      781 atcgccccgc gaaagtagct ggcgttatcc ctgagctgct ttactcggtc aggatgactg
      841 gtaaggaagt tcaccgatgc gagcgcgctg gaggccactg tgggcggcaa tgcgttggag
      901 aacagctgcg gacgcgaccg ttgggtcaac gtgtcacaca gcgccgcagc gcccgctaca
      961 aagccgccag cggcgccgcc cagtgccttt ccaagtgtcg aagtaatgat gtccacttcg
     1021 ccgagcacgc caaaatgctc ggcggtgccg cgtcctgtct ttcccagcac gccggtcgcg
     1081 tgcgaatcgt ccatgacgac gattgcgtcg tgcttgcgtg cgatgtcgag gatctcgggg
     1141 agtttcgcga tgctcccttc catcgagaag acgccatcgg tccagatgat tcgccggcgc
     1201 gctgagctcg cgccgcggag cttggtgcgc aggtcgtcca tgtcggagtg ggcgtagacg
     1261 ccggtcgtgc acttggtgat cgacttggcg agccgcatcg agtcgatgat cgacgcatgg
     1321 ttcagcgcgt cggagatcac gaaatcgccc tcctgcgcga tcgatgccgt cagtccttca
     1381 ttggcattcc acgctgagac gtatgtgagc gatgcagcgg tgccgaccag tttggcgagc
     1441 gcgctttcga gctcgcgatg cacggtgaac gtgccgcaga tgaagcgcac gctgccggtt
     1501 ccggcgccga aagtctgaag ccccttgatc cccgcttcga cgacatcggg ctcgtcacag
     1561 aagccgaggt agttattcga agagaggatg agaacgtcac cacggccttc catctgtacg
     1621 tgcgccgact gcggcgattc cagatagttc agttgcttgt agaccttctc gtccttgagc
     1681 tgctggatgg atgcctggag ggacgagaca aaattcttgt tgatcatttt ata
//
LOCUS       DATIMD010000357         3921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_718852, whole genome shotgun sequence.
ACCESSION   DATIMD010000357 DATIMD010000000
VERSION     DATIMD010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3921
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_718852"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2466
                     /locus_tag="VLI40_07935"
     CDS             <1..2466
                     /locus_tag="VLI40_07935"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU97144.1"
                     /translation="ANLQHPHILPLFDSGSADGLLYYVMPYVDGETLRTRLAREKQLS
                     VGDAVRIASEAADALEYAHGRGVVHRDIKPENILLQNGHALVADFGIALAVQQAGGQR
                     MTQTGLSLGTPQYMSPEQAMGERDIGVRSDIYSLGAVTYEMLVGDPPFTGPTAQAIVA
                     QVITGEPKSLTSQRKTVPVHVADAVIVALEKLPADRFASASEFATALTGNTGRVSHAT
                     RAGLDNDGPDTRPWRNLAIGTIVVALAAVAVAAWGWLRPPRADAARPLSLSVTLPAEE
                     TLSQAGLAISPDGTHLAFIATNPAGNRTVFVRDLADKTVRAVPHTDGADTPFFSPDGQ
                     TIAYSAGGALWKVSLNGGDPEQIPGTNDGSVDAGAGISGGDWAADGIIRYSPRFRFGL
                     GVLAVAATGGKPRIIALPDSSAGEAELSLPQLLPDGRTLLCVVRMTGSASSSSRLALV
                     SLDNRRVRLLDVQAQAGRYALGQLVYATADGAMFAASFDPSHGKLTGPAVRIAGIDDD
                     LDGESFALSREGTLAYAGGSSDNAHIVAVSRSGTARVLDRDLHDYQALSLSPGARRIA
                     VNIGERSARDIWLLDPVRGSMTRLTLGHDNIYPVWSADGQRIAYSANVAGTYDILARA
                     SDGTGGVDTLVKGPRYKFPGALTADGRWLIYRQNDAKTNEDIYAISLDGHHTIRALDA
                     SPFMEIEPELSPDGRWLAFVSDESGQHEVYVQPFSADASVGARTQVSVAGGDEPRWDP
                     SGKELYYRSADSLFAVPITDGRAGKPAALFADPYLRGPRFPGYDVLPGGAGFVMLQRP
                     RDAHIDLRVVADWPGLLSRGTAQ"
     gene            2614..2865
                     /locus_tag="VLI40_07940"
     CDS             2614..2865
                     /locus_tag="VLI40_07940"
                     /inference="COORDINATES: protein motif:HMM:TIGR01552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008219 - cell death [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HSU97145.1"
                     /translation="MTDDIETMSISHFKATCLSVLENVRQTGQPVRVTRRGQPMAEIV
                     PVASASNGATWLGSLRGSIRVHGDIVSPVSRADDWEALR"
     gene            2865..3296
                     /locus_tag="VLI40_07945"
     CDS             2865..3296
                     /locus_tag="VLI40_07945"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HSU97146.1"
                     /translation="MQLLLDTHIWIWSVSAPENLSPKVRKALEAPENVLWLSPISVWE
                     ATILFQRGRLLGDSGPDDAVREMLRVVPQRIAALTHEVAIASCTLKLAHRDPADRFLA
                     ATAKVHELTLVTADKRLLASREYATLENSVRRKPAKGARPK"
     gene            3293..>3921
                     /locus_tag="VLI40_07950"
     CDS             3293..>3921
                     /locus_tag="VLI40_07950"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSU97147.1"
                     /translation="MTDIDERLRTALSDRYLIERELGAGGMATVYLAEDLKHHRKVAI
                     KVLRPDLAQALGSVRFLREVEIAARLTHPHVLALYDSGAADGALYYVMPYVEGESLRA
                     RLAREGALPINETCRIIRDVADALAYAHRHGVVHRDVKPENILLSDGHALVADFGVAK
                     AVSDVVSTLGGAPRTTLTTAGMTLGTPTYMSPEQAAADPQIDSRADLYAL"
BASE COUNT          725 a         1225 c         1232 g          739 t
ORIGIN      
        1 gcgaacctgc agcatccaca tattcttccg ctgttcgaca gcggctccgc tgatggattg
       61 ctgtattacg taatgccgta cgtcgatggc gagacgctgc gcacgcgcct ggctcgggag
      121 aagcagctct ccgtgggcga cgccgtccgc attgcgtccg aggcagccga cgcactcgag
      181 tacgcacacg gccgcggcgt agtgcatcgc gacataaagc ctgagaacat tctgcttcag
      241 aacggccatg cccttgtcgc tgacttcggt attgcgctgg ccgtgcaaca ggcaggcggt
      301 cagcgcatga cgcagacagg attgtcactc ggcactcctc agtacatgag ccccgagcag
      361 gccatgggtg agcgcgatat cggcgtgcga tcggacatct actcgctcgg cgccgtgacg
      421 tacgagatgc tggttggtga tccgcccttc acgggaccta ctgcgcaggc catcgtcgcg
      481 caggtgatta caggcgaacc gaagtcactc acgtcgcaac gcaagacggt cccggtccac
      541 gttgcggatg cagtgatagt ggcgctcgag aaacttcccg ccgatcggtt tgcaagtgcg
      601 agtgaattcg cgaccgcgct taccggcaac accgggcgcg tcagtcacgc tacacgcgca
      661 ggcctggata atgacggtcc cgacacgcgg ccgtggcgca atctcgcgat cgggacaatc
      721 gtcgtcgcgc tcgcggcagt cgcagtcgca gcctggggct ggctgcggcc gccacgcgcc
      781 gacgcagcgc ggccgctatc actttccgtg acgttgccag cggaagaaac actctcgcag
      841 gccggactgg cgatctcccc tgatgggacc cacctcgcat tcatcgcgac aaacccggcc
      901 ggcaaccgca ctgtatttgt gcgtgatctc gccgacaaga ctgtgcgtgc ggtgccacac
      961 accgatggag ctgacacacc gttcttctca cccgatggtc agaccattgc gtactccgcg
     1021 ggaggtgcgc tgtggaaagt gtcgctgaac ggaggtgatc cggagcagat tccgggcacc
     1081 aacgacggat cggttgatgc cggcgccggg ataagcggcg gcgattgggc cgctgacggc
     1141 atcatccgct actcgccgcg cttccgtttt ggcctcggtg tactcgcggt ggccgcaaca
     1201 ggcggtaagc ctcgtatcat cgcgctgccg gattcaagcg caggtgaagc cgagctttcg
     1261 ctgccgcaac ttctcccgga tggtcgcacg ctgctgtgcg ttgtgagaat gaccgggagc
     1321 gcgtcgtcgt cgtcgcgact cgcgctcgtc tcgctcgata acaggcgagt acgtttactg
     1381 gacgtccagg cgcaagctgg acgatatgcg ttggggcaac ttgtgtatgc taccgcagat
     1441 ggcgcaatgt tcgcggcgtc gttcgatcct tcgcatggga agctcacggg gccggctgtt
     1501 cgcattgcgg ggatcgatga tgatctcgac ggagagagct ttgctctgtc gcgcgaaggc
     1561 acgttggcat acgcgggcgg cagttccgat aacgcacaca ttgtggcggt tagtcgcagt
     1621 ggcacagcgc gcgtgctcga ccgtgacctg cacgactacc aggctttaag cctctctcct
     1681 ggcgccagac gcatcgcagt caatatcggc gagagatccg cccgcgatat ctggctgctc
     1741 gatccagtgc gcggcagcat gactcgtctg acgctaggtc acgataacat ctatccagtg
     1801 tggagcgccg atggtcagcg catcgcttac tccgcaaatg ttgccgggac atacgacatc
     1861 ctcgcccgcg catcggacgg gacgggcggc gtggatacac tcgtgaaggg tccgcgatac
     1921 aagttcccag gcgcactgac agccgacgga cggtggctca tctatcgtca gaatgatgcg
     1981 aagaccaacg aagacattta cgcgatctca ctggacggcc accatacgat ccgagcactc
     2041 gacgcatcac ccttcatgga aattgagcct gagctctcgc cggacggccg gtggctggcg
     2101 ttcgtgtcgg acgagtccgg ccaacatgaa gtctatgtgc aaccgttcag cgctgatgct
     2161 agcgtcggtg ccaggaccca ggtctcagtc gcgggtggcg atgaaccacg ttgggaccca
     2221 agtgggaagg agttgtacta tcggagcgcc gacagtctgt tcgcggtccc catcactgat
     2281 ggacgtgcgg ggaagccggc cgcgctattt gcggatccgt accttcgcgg cccacgcttc
     2341 ccgggttatg acgttttgcc tggaggcgca gggttcgtga tgttgcaacg accgcgcgac
     2401 gcgcatatcg acctgcgcgt cgtggcggat tggcccggcc tgttgtcgcg gggtactgcg
     2461 cagtgacggc tgctggagaa gacaccttca cggggtgcgc agcagatgca ggccaacatc
     2521 tggatggtca agcgtgcatc cgctggggga tccggccaca gagttgacca taggcattga
     2581 ctataggcca tttttgcgca tatatatcct gacatgaccg acgatatcga aaccatgagt
     2641 atctcgcact tcaaggccac ctgcctttca gtgctcgaga acgttcgcca gactggccag
     2701 ccagtccgcg tcaccaggcg cggtcagccg atggcggaaa ttgttccagt cgcgtccgcc
     2761 agcaacggtg cgacgtggct cggctcgctc cgtggctcca tccgcgtaca tggcgacatc
     2821 gtgtctcccg tgtcccgcgc ggacgactgg gaggcgctcc gctagtgcag ttgctgctgg
     2881 acacacatat ctggatctgg agtgtgtccg cacccgagaa tctctcaccc aaggtccgca
     2941 aagcgctcga agcgccagag aacgttctct ggctttcgcc gatcagcgtt tgggaggcaa
     3001 ccatcctgtt ccagcgcgga cggctcctcg gtgacagcgg tcctgacgac gcggttcgcg
     3061 aaatgctgcg cgtcgtgccg cagcgaatcg ccgcactgac ccatgaagtt gccattgcca
     3121 gttgtacgct caagctggcg catcgcgatc cagcggatcg gtttctcgca gcgacggcca
     3181 aggttcacga actgacgctc gttaccgctg acaagcggct gctcgcgtcg cgcgaatatg
     3241 cgaccctcga gaattcagtg cggcgcaagc ccgcgaaggg tgcgcgcccc aaatgacgga
     3301 tatcgatgaa cgtctgcgga cggcgctcag cgaccgttat ctcatcgagc gcgagctcgg
     3361 cgcgggcggc atggcgacgg tgtatctcgc cgaagatctg aagcatcatc gcaaggtcgc
     3421 gatcaaggtg cttcgccccg atctcgccca agcactcggc tcagtccgtt ttctgcgcga
     3481 ggtagaaatc gccgcgcggc tcacgcatcc gcacgtactt gcgctttacg actcgggcgc
     3541 agcggacggc gcgctgtact atgtgatgcc gtatgtggaa ggcgaatcgc tccgcgccag
     3601 gcttgcgcgc gagggcgcgc tccccataaa cgagacgtgt cgcataattc gcgacgtcgc
     3661 cgacgcgctt gcgtacgcgc accgacacgg cgtcgttcac cgcgacgtga agccggagaa
     3721 tatccttctc tccgacggtc acgcactcgt cgcggacttc ggcgtggcaa aggccgtgag
     3781 cgatgtggtg agcacactcg ggggcgcgcc ccgcacgacg ctcaccaccg cggggatgac
     3841 actcggcaca ccgacgtaca tgtcgcccga gcaggcggcg gccgatccac agatcgattc
     3901 acgcgctgat ctctacgcgc t
//
LOCUS       DATIMD010000358        15121 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1585912, whole genome shotgun sequence.
ACCESSION   DATIMD010000358 DATIMD010000000
VERSION     DATIMD010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 15121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15121
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1585912"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..720
                     /locus_tag="VLI40_07955"
     CDS             <1..720
                     /locus_tag="VLI40_07955"
                     /inference="COORDINATES: protein motif:HMM:NF017932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M90 family metallopeptidase"
                     /protein_id="HSU97148.1"
                     /translation="AIVERNLPVFHRLPPADQSELLGHMQVFLAEKHFEASGGLEMTD
                     EIRVTIAAQACMLLLHRETDYYPELTSIIVYPSGYTAYEQHPIGGWIWEEGGQDRLGH
                     TARELRAMVLAWDAVKQGAADPTDGRNLVLHEFAHQLDFENLVADGTPELQTRGAYIA
                     WARVMSAELLALRRADDEGLPTVLDTYGATNPAEFFAVATEAFFEQPLALQTRHPELF
                     RELRAFYRQDPTAYSSELHHD"
     gene            990..3491
                     /locus_tag="VLI40_07960"
     CDS             990..3491
                     /locus_tag="VLI40_07960"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU97149.1"
                     /translation="MSALIERVRSSISDRYVVEREIGQGGMATVYLARDVEHDRQVAV
                     KVLSTDVSVVLGAERFRREIAVTTALVHPHILPILDSGQAGNSLYYVMPYVEGESLRS
                     RLDRERSLSIDDSIRITCEIGDALEYAHQNGIVHRDIKPENILMDGDRAVLADFGIAH
                     AMAQVGEQRLTQTGLSLGTPTYMSPEQASAERVLDGRSDVYSLACVAYEMIGGQPPFT
                     GPTAQAVIARHMLDSVPSLTIIRSTVPPQIERILMKALSKVPADRYLTSGEFIGALQH
                     PETQTFRVMQPARFESQRMPLWQRIALGAAAVAVIAGGGYGAWRATHRVGGVGVASGP
                     DPRKIAVLYFGDESDGHKLGYLASGLTEGLIDRLSAIPELQVTSKNGSALYANKDVPR
                     DSIARALSVGTLVDGSVEQHGDKISVSVRLKDATGTDFQRATFEAAASNPLALRDTLA
                     ERVTRFLRQRLGQEISLRTERAGATNPQAWSLLQQAKLQLRSGDTAAASNDTAGILRD
                     YAQADSTLVRATAIDPGWTQLPTMRGQIDYRASRFFGSDQLRANQWIERGLARVAEAI
                     QIAPKDPDALELRGTLHYWRWLLAIEPDPVKARALLDDSRKDLENATEISPNRPTAWS
                     VLSHLYYQYNDVVNAKLAARRAYEEDAYLSDADRIVWRLFTSSFDLEQFPDAIHWCDV
                     GTARFPGNALLAQCNLLMMGTTAVKPDIPRAWRLADSMVKVSQPANRPLAKLNAQALV
                     AAALARAGLADSAENVLAKLDDPSDIDPTKDVTETKAFVWTLLGKKDKAISALALYLT
                     ANPARAIAFDDEHNWQWRSIHDDPRFQALVVRPKQ"
     gene            3591..5477
                     /locus_tag="VLI40_07965"
     CDS             3591..5477
                     /locus_tag="VLI40_07965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97150.1"
                     /translation="MRRIPRLSTLLVLAVPGVVWLTACSSDRSTAPAGADAAASANQG
                     TQTHTGQCVVPTQQQITALFNPTYVGQATSGFNSITNDLKKNNTSAAISDMFAEWKYT
                     LDAYYAGQLNGGTSAQTQANVLAFGQSLYCLVGLDGSTLTLGSTPLDPDDIVQVVFPS
                     ASDQTVVIGSKHAGVLILGGTLTQPVTISISILRTAYTFPAGPLNTKLDQYGPFFEFK
                     VIPEQTFTTSVVTGACLATPTGDQPPSSVHLAHNVGQGLEILPQAATPFLTCDVPAPQ
                     PSVLQMARNGEYGKAVKQLGSDAVNLFSPTTAYALVSSGVGGKTTSFSPFGGVDTAVV
                     VTTPANFPAQPQTAPAGSSVAAAPSALVQTTNGHTPLGGASVTFAVASGGGSVGPTTS
                     STRTTTLTLNTDANGLATVPNWTLGAGPSNSLTASASFTLPTSISGFPTSGIGVTVSG
                     SPLTFTATSTDVIPYQATGYVYLSGLDGLDLGFEQPAFPTSGWSTGTAAFGSSNLGAS
                     CASLMPTVTTTWVNNPSGTTDMLLRKSFTLPAWWTAGLTVGIAIDNDFKAYVDGVNVT
                     PTSATGYDPTSGFVKHEGCATRDSYTFPISVPATSGGSHLLAIRARDRGTAAYVDTRI
                     GVTP"
     gene            5569..5955
                     /locus_tag="VLI40_07970"
     CDS             5569..5955
                     /locus_tag="VLI40_07970"
                     /inference="COORDINATES: protein motif:HMM:NF022317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2784 domain-containing protein"
                     /protein_id="HSU97151.1"
                     /translation="MLYHWLSDAVVLFHAAFVVFVVVGGFLALRWRRLVWLHAPAAVW
                     GVMIEYGGWICPLTPLENMLRRRAGVAGYSGGFIEHYVLQRLYPSGLTPQIRWTLGTL
                     ALVLNIVAYTLIIRQRSHPAERTGPR"
     gene            6075..6410
                     /locus_tag="VLI40_07975"
     CDS             6075..6410
                     /locus_tag="VLI40_07975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97152.1"
                     /translation="MGATLGRWRRRLFLLACGSYWTVLVLVLFGPPTIAAWRVSRPDG
                     GHGVINASLSGATLSIAMSSSHTAPWSASIGLWTIAFWLVGPPLVLWLALRGIQQRDP
                     MTPLRTTHR"
     gene            6581..7600
                     /gene="pstC"
                     /locus_tag="VLI40_07980"
     CDS             6581..7600
                     /gene="pstC"
                     /locus_tag="VLI40_07980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HSU97153.1"
                     /translation="MSVVLAFSNDMDSIERIRGMSGLGRDTAENSSIIGSDLGDRAYS
                     LVTTAFAVCIPVLLIAIAVEIGRAAWPALHQFGFGFLTSSEWDVPAGKFGAAPAIFGT
                     VVSSLIALLIATPLALGVAIFLSEFAPRWLQQPVAFLFDLLAAIPSVVYGLWGIFVMI
                     PLLREDVVPFLRDTLHLGATPLFAGPAYGPSMLAAGIILAIMALPYISAVSREVLRAV
                     PRSQREAALALGATRWEVIRDAVIPNARSGIMGGVILGLGRALGETMAVTMVIGNRAE
                     ISSSLLAPGYTMASLIANEFSEATSDLHLSALMAVGAVLFAITIIVNAIARWLVWSVS
                     VRNEA"
     gene            7597..8475
                     /gene="pstA"
                     /locus_tag="VLI40_07985"
     CDS             7597..8475
                     /gene="pstA"
                     /locus_tag="VLI40_07985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HSU97154.1"
                     /translation="MSAAVLARSTRRNRLRRRGVSGLMVTLTYLAAAIATLPLLLIVI
                     HIVRLAAGAISVDLFTKMPQPVGESGGGMANAITGTLILIGIAAAVGVPIGIGAGLYL
                     ADHKRTPLANTVRFLSDVLNGIPSIVMGIFAWQLLVRPVGHFSALSGGVALGAMIIPL
                     VTRTTEELIRTVPNSLREAALALGYQRWRTSLSVMLRTAMPGIVTGALVAIARIAGET
                     APLLFTAFGNQFWSTSLRQPIAALPLQIFTYAISPYDEWHSLAWAGALVLIGIVLIIS
                     IAARLATRSRFGAVVD"
     gene            8468..9388
                     /gene="pstB"
                     /locus_tag="VLI40_07990"
     CDS             8468..9388
                     /gene="pstB"
                     /locus_tag="VLI40_07990"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004060638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HSU97155.1"
                     /translation="MTEPRVVALPGDPGIDGRFSAIEPDFAAERELPVAQHVFPNADR
                     RIARSGTRADVARLEATGLNAYFGRQHAVKDVTLALEPRSVTAIIGPSGCGKSTLLRC
                     LNRMHETVPGARTTGSVTLDGEQLYGDGTSAIAVRRHIGMVFQRPTPFPTMSIRDNVA
                     AGLKIHGGTPPRARFDDIVEDALRRAALWNEVKDRLGTGASALSGGQQQRLCIARALA
                     TRPRVLLLDEPTASLDPASTQKIEELVYELPSTVTVGIVTHNMQQAARVSHRTAFMLD
                     GELIETAPTRALFTAPRDVRTEAYITGRFG"
     gene            9385..10179
                     /gene="pstB"
                     /locus_tag="VLI40_07995"
     CDS             9385..10179
                     /gene="pstB"
                     /locus_tag="VLI40_07995"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004060638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HSU97156.1"
                     /translation="MSAVADRIDVSEPPTGTIEASGFSFFYGRKQALFDVSLAIEPRS
                     ITALIGPSGCGKSTFLRSINRMNDTIPGTRQEGAMLLDGTDVYARGTDVVALRQRVGM
                     VFQRWNPFPTSIYDNVIYGPRINGVTSRSQLDELAEDALRRAALWDEVKDRLRRSALG
                     LSGGQQQRLCIARALANQPEVLLLDEPASALDPIATRKVEQLLHELKSELTIVIVTHN
                     LQQAARISTRTAFFFLGELVEADSTDRIFTRPREDRTEAYITGRFG"
     gene            10176..10865
                     /gene="phoU"
                     /locus_tag="VLI40_08000"
     CDS             10176..10865
                     /gene="phoU"
                     /locus_tag="VLI40_08000"
                     /inference="COORDINATES: protein motif:HMM:TIGR02135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HSU97157.1"
                     /translation="MTALQDAPNGFRHFHDQIDELKARLLTMSTRAEEMIEQAVDALL
                     HNDHGIAEMVVTSDAELNALEVEIEERAVALLALQQPMARDLRFIVGAIRVSSDLERI
                     GDHAVNIAQSSLRLIEQRATLVPDPEIEDMARRARIMLSDSLDAFLRSDGALGRKVCQ
                     ADDAVDALHDSIFRILLTHMMGDARTITPSLELLLVSRNLERVADLATNIGEDAVYLA
                     EGKQIKHHFED"
     gene            10951..12543
                     /locus_tag="VLI40_08005"
     CDS             10951..12543
                     /locus_tag="VLI40_08005"
                     /inference="COORDINATES: protein motif:HMM:NF014587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HSU97158.1"
                     /translation="MPNEADQTSPLAQSRRPAPRADDVRIAAIGIGSNSIRQIVADVS
                     PDGEIRVVDEMKAAPRLGEGVGETGRIGEAAIRNALDALLRMATLTRQMGVVRTEAVA
                     TSAVRDAENGAEFIAAVRDTTGLSVRILDGDEEALLSYRSALAHFDLATGRAVVMDIG
                     GGSLELALSADGLLDGLMSFPMGAITMTERFFGKNRGRKELEELRRFARKELRAAVSR
                     RDWHGARLIGSGGTFTNLAGMILSRQGMGRASGVHGTIVTRAELEHVLDLLQGMSPSE
                     RQTVPGLSPARADIIIAGLAVATEVMARIEARELVVSAYGIREGLLLEAASITPVVAD
                     AGDARSRSVLQLAERSHYEAPHAQQVRRLALEIFDAVAAKLELGPGDRAVLADAALLH
                     DIGYHINFEAHHKHSYHLILHAELLGMTPAERVMVANVARYHRGAAPRAEHRAYAGLD
                     RQLRRRIKRLAAILRIADGLDRGHASAIKDLDVELTRNEAIIRAIPASSSYDLRLELW
                     GATRKSELLEEVLGIPVRIEAA"
     gene            complement(12553..13032)
                     /locus_tag="VLI40_08010"
     CDS             complement(12553..13032)
                     /locus_tag="VLI40_08010"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HSU97159.1"
                     /translation="MSTTPLSNPGVRFPPPFIFLIGLIAGWGLDRYVFALPLASPGSE
                     TLLVVGVSLVAIGVLLAAWGIITFRLARTSVIPHHSASRLVTAGPYRFTRNPMYTGLL
                     IAYVGATALLGTLWPLVLLPFVIFVMIRFVIQREERYLSDAFDADYFAYRGRVRRWL"
     gene            13196..14131
                     /gene="deoC"
                     /locus_tag="VLI40_08015"
     CDS             13196..14131
                     /gene="deoC"
                     /locus_tag="VLI40_08015"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: protein motif:HMM:NF013916.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004139 - deoxyribose-phosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0009264 - deoxyribonucleotide catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HSU97160.1"
                     /translation="MSYISAVTKHALTDDFGSVDRVGIEERVAKFTTRSIKRNSKLWG
                     LHTAVSMVDLTTLEGKDTPGKVASLCQKARQPSDDATIPAVAAVCIYPSLIKEARKHL
                     ADSPIKIASVATAFPSGQSSLKVRLQEVKYAVNAGADEIDMVINRGLFLSGEYDAVQD
                     EIAAVVEACGDATLKVILEVSELETYDNIRAASFIAMQVLRAGDFIKTSTGKAAGSAT
                     LANTQVMLESIRDFYLDTGIPIGMKPAGGIKTAKQALHYLVAVKETLGDAWLNSSRYR
                     FGASSLLNDLLRQIHKEKHGAYQAPYYFSEAAESY"
     gene            14134..>15121
                     /locus_tag="VLI40_08020"
     CDS             14134..>15121
                     /locus_tag="VLI40_08020"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSU97161.1"
                     /translation="MAITLDPSENESASKDPKKRHGRRQGMPELIFGDLWEYDPAPET
                     ADPRIRQRYDLFIGGRFIAPQSGEYFASINPATEQTVTEIALASAADVDSAYMAAQLA
                     YQTVWRDMPGRERGKYIYRIARLLQDRAREFAVAESIDGGKPIRESRDFDVPMAAAHF
                     FYHAGWADKLAYVAPGRTVEPIGVVGQVIPWNFPLLMLAWKIAPALAAGNCVVLKPAE
                     TTSATAMKFAELLQEAELPDGVVNIVTGAGETGAALTGHPAARKIAFTGSTEVGKLIM
                     RQLAERGTRMTMELGGKAANVVFEDSPIDQAVEGVVNGIFFNQGHVCCAGSRL"
BASE COUNT         2967 a         4706 c         4691 g         2757 t
ORIGIN      
        1 gccatcgtcg agcggaatct tcccgtattt caccggcttc cgcccgcgga tcagagtgag
       61 ctcctcggtc acatgcaggt cttcctcgcc gagaagcact tcgaggcgag cggcggcctc
      121 gagatgacgg atgagatccg cgtcacgatt gccgcgcagg catgcatgct cctgctgcat
      181 cgcgagaccg attactatcc cgagctgacg tcgataatcg tctatccatc cgggtacacc
      241 gcctacgagc aacatcccat cggcggctgg atctgggagg aaggcggcca ggaccggctc
      301 ggccacacgg cgagggagtt gcgcgcgatg gtactcgcct gggacgccgt gaagcagggc
      361 gcggctgatc cgaccgacgg acgaaacctc gttcttcacg aattcgccca tcagctggac
      421 ttcgagaacc tcgtcgccga cggaacgccg gagctccaga ccagaggggc ctacatcgca
      481 tgggcccgtg taatgagcgc agagctactg gcgttgcgcc gtgcggacga cgagggactt
      541 ccgaccgttc tggacactta cggagccacg aaccccgcgg agttcttcgc ggttgctaca
      601 gaggccttct tcgagcagcc actggccttg cagacccgcc acccggagct tttccgcgag
      661 cttcgcgcgt tttatcggca ggatccgacc gcgtactcga gtgagttgca ccacgattga
      721 gcgcggtggc gcgaacttcc ggaagagagg tatcgattac cacgggccag ccccgcatcc
      781 gagtcgcgtg aagtagtact ttccccgtct tcggggtacg gggtcaccgg cgcagatgtt
      841 tggctggtgg tcagacgccg gcccatcccc ggaacggcat cacaccgcag tagccgctgc
      901 gatatccctg cgggatattt ccggtcgctg ctggcgctta cggatgttta gcggcatact
      961 ggtggattcc cccggagaat tacgggcccg tgtcagcgct gatagaaaga gttcggtcct
     1021 cgattagtga ccgttacgtc gtcgagcgag aaataggtca gggtggcatg gccaccgtct
     1081 atctcgctcg ggacgtcgag cacgaccgtc aggttgcggt aaaggtgctc agcactgacg
     1141 tgtccgtcgt actcggcgcc gaacggttcc gacgcgagat cgccgtcacg accgcgctcg
     1201 tgcacccgca cattcttccg atactcgact cgggacaggc tggcaattct ctctattacg
     1261 tgatgccata cgtggaggga gaatcactgc gctcgcgcct cgatcgcgag cgcagtctgt
     1321 cgatcgacga ctcgatccgt atcacgtgcg agatcggcga tgcgctcgag tacgcgcatc
     1381 agaacggcat cgtgcatcgc gacatcaaac ccgagaacat cctgatggat ggcgatcggg
     1441 cagtgctggc cgatttcgga atcgcgcacg cgatggcaca ggtgggcgag cagcggctca
     1501 cgcaaacagg gttgtcgctc ggcacaccga catacatgag tcccgagcag gcgtccgcgg
     1561 agcgcgtgct ggatggccgc agcgatgtgt acagtctcgc gtgcgttgcg tacgagatga
     1621 tcggaggcca gccgccgttc accggaccaa cagcgcaggc ggtgatcgcg cggcacatgc
     1681 tcgattccgt gccatcgctc acgatcatac gaagcacggt accgccgcag atagaaagaa
     1741 ttctgatgaa ggcgctctcg aaagtgccgg ccgatcggta cctgacatcg ggcgaattca
     1801 ttggtgcgtt gcagcatccg gaaacgcaga cgtttcgcgt catgcagccg gctcgattcg
     1861 agtcgcagag gatgccgctc tggcaacgca tcgcgctggg cgctgccgcg gttgccgtaa
     1921 tcgctggcgg cggatacgga gcgtggcgag caacacacag agtgggcggc gtcggcgtcg
     1981 cgagcggccc cgacccaaga aagatcgccg tcctgtattt cggcgatgag agcgatggcc
     2041 acaagctggg ctatctcgcg agtggtctca cagaaggtct gatcgaccgg ctctctgcga
     2101 ttccggagct gcaggtaact tcgaagaacg gctcggcgct gtacgccaac aaggatgtcc
     2161 cgcgcgacag catagcgcgt gcgctgagtg tgggaacact cgtcgacggc agtgtcgagc
     2221 aacacggcga caagatcagc gtgagcgtga ggctcaagga cgcaaccgga accgactttc
     2281 agcgcgcgac gttcgaagcc gcggcgtcga atccgttggc gttgcgtgat acgctggcgg
     2341 agcgcgttac aagattcctg cgtcagaggc tcgggcagga gataagcctt cgaaccgagc
     2401 gcgcgggtgc gacgaatccg caggcctggt cgttgctgca acaggccaag ctgcagctgc
     2461 gtagcggaga caccgccgct gcatcgaacg acaccgcagg catactgcgc gactatgcgc
     2521 aggcggattc cacgctcgtg cgtgccacgg ccatcgatcc gggttggaca cagctgccaa
     2581 ctatgcgtgg acagatcgat tatcgcgcat cccgcttctt cggaagtgac cagctgcgcg
     2641 cgaatcaatg gattgaacgg gggctcgcgc gcgtagccga ggcgattcag atcgcgccga
     2701 aggatcctga cgcgctcgag ctgcggggca cgttgcacta ctggcgctgg ctcctcgcga
     2761 tcgagccgga tccagtgaag gccagagcgc ttctcgacga ttcgcgcaag gacctcgaga
     2821 acgctacgga aatctcgccc aacagaccaa ccgcgtggtc ggtactgagc catctgtatt
     2881 atcagtacaa cgacgtggta aacgcgaagc tggccgcacg tcgtgcgtat gaagaagatg
     2941 cgtatctcag cgacgctgac cgtatcgtct ggaggctctt cacgtcgtcg ttcgatctgg
     3001 aacaatttcc cgatgcgatt cactggtgtg acgttggaac ggcccgcttt cccggcaacg
     3061 cgcttctggc ccagtgcaac ctgttgatga tggggacgac cgcggtcaag cccgacattc
     3121 cacgcgcctg gcgcctggcg gactcgatgg tcaaagtgtc acaacccgcc aaccggccgc
     3181 tcgcgaagct caacgcacag gcgctcgtcg cggccgcgct cgctcgcgca gggctcgccg
     3241 atagtgccga gaacgttctt gcgaaactgg atgacccgtc cgacattgat cctacgaagg
     3301 acgtgacgga aaccaaagct tttgtctgga ccctgcttgg caagaaggac aaggcgatca
     3361 gcgctctcgc gctgtacctt acggccaatc ccgcgcgcgc catcgcattt gatgatgagc
     3421 ataattggca atggcgaagc atccacgacg acccgcgctt ccaggcgctc gtcgtgcgac
     3481 cgaagcagtg aagcgctgca gcacttgaac tgtgaaccag tgaaccagtg aagcagtgaa
     3541 gctccttgtt tgataactga aacaccaaaa aatcacacca ggagcattca atgcgtcgta
     3601 ttcctcgact ttccacactc ctcgttctcg cagtgccagg agtcgtctgg ctcacagcgt
     3661 gctcgagcga ccgatcaaca gcgcctgccg gcgctgatgc tgctgcaagc gcgaaccagg
     3721 gcacgcaaac ccatacaggt cagtgcgtgg tgccgacaca gcagcagatc actgcgctct
     3781 tcaacccgac gtacgtcggg caagctacat cgggattcaa cagcatcacc aacgacctga
     3841 agaagaacaa tacgtccgcc gccatcagcg acatgttcgc ggaatggaaa tacacgctcg
     3901 atgcgtatta cgccggccag ctgaacggcg gaacgtccgc acaaacgcag gcgaacgtgc
     3961 tcgcgttcgg acagtcgttg tattgtctcg tcggacttga tggctctacg ctcacgctcg
     4021 gttcgacgcc gctggacccc gacgatatcg tccaggtcgt gtttccgtca gctagcgacc
     4081 agacagttgt aataggctcc aagcacgctg gtgttctcat cctgggcggc acgctcacgc
     4141 agcccgtgac gatttccatc tcgatcctgc ggacggcata cacgtttccc gccggaccgc
     4201 tcaatacaaa actggatcag tacgggccct tcttcgaatt caaggtgatc ccggagcaaa
     4261 cgttcaccac gtcggtcgtg accggagcat gtcttgccac gccgactggc gaccagcctc
     4321 catcaagcgt gcatcttgcg cacaatgtag gacagggact ggagatcctg ccgcaggctg
     4381 cgacgccatt tctcacatgc gacgtacctg cgccccaacc gagcgtgttg caaatggcac
     4441 gaaacggtga gtatggcaaa gcggtgaaac agctcggatc ggatgccgtc aacttgttct
     4501 cgccaaccac cgcatacgct ctcgtatcga gcggagtcgg cggaaagacc acatccttca
     4561 gcccgttcgg tggcgtcgac accgctgtcg tcgtgacgac acctgcaaac ttccccgccc
     4621 aaccgcagac tgcaccagca ggctcgtcgg ttgccgcggc gccgtcagcc cttgtacaga
     4681 cgaccaacgg ccacacaccg ctcggcggtg cgtcggtgac attcgcagtt gcatcgggtg
     4741 gcggaagcgt cggcccgacg acgagctcga cgcgcaccac gacgctcaca ctcaacaccg
     4801 atgccaacgg cctcgcaacg gttccaaact ggacgctcgg cgcgggacca tcgaactcgc
     4861 tcactgcaag cgcgagcttc acactcccca ccagcatctc ggggttcccg acgagtggaa
     4921 tcggagtcac cgtgtcgggt agtccgttga cttttaccgc gacgagcacc gacgtgatcc
     4981 cttaccaggc tacgggctac gtgtacctgt ccggcttgga cggcctggac ctgggattcg
     5041 aacagcccgc ctttcccacg agtggctgga gcactggtac cgcagcgttc ggaagctcga
     5101 acctgggggc gtcgtgcgct tcgctgatgc cgaccgtgac caccacctgg gtaaacaatc
     5161 cctccggtac gacggacatg ctgcttcgca agagctttac gctgccggca tggtggaccg
     5221 cgggactgac tgtcgggatc gcgatcgaca acgacttcaa ggcgtacgtc gatggcgtga
     5281 acgtaacgcc gacgagtgcg acggggtatg accccacttc gggattcgtg aagcacgagg
     5341 gttgcgcgac gcgggacagc tacacgttcc cgatatcggt accggcaacc agcggcgggt
     5401 cgcaccttct cgcgatccgc gcgcgtgatc gcggcaccgc ggcttatgtc gacacgagga
     5461 tcggcgtcac gccgtaacag tggcctggag agcatgccgg ccggcatgct ctccagttgg
     5521 cgcgggaagt gcgcgaagtg acaacatcgc gtccgcttcc ccgcttgcat gctctatcac
     5581 tggctttcgg acgccgtcgt gttgtttcac gcggcgttcg ttgttttcgt agtcgtcggc
     5641 ggatttctgg cactccgctg gcgccgtttg gtgtggctgc atgcaccagc ggcggtatgg
     5701 ggcgtaatga tcgagtacgg tggctggatc tgccccctca caccgctcga gaacatgctt
     5761 cgccggcgcg cgggcgtcgc aggctattct ggcggcttca tcgaacatta tgtgctacaa
     5821 cgactgtatc cgtcgggtct cacgccacaa atccgctgga cgcttggtac gctggcgctg
     5881 gtactcaaca tcgtcgcgta cacgctgatc atccgccagc gaagccaccc cgcagagcga
     5941 accgggcccc ggtgagaggt gtcgatatgg cggcggatga aaaagcgcgc tattctctcc
     6001 cgaaacggct gtgtgatccg ccgtgtgaac catcgtatcg cgtacgggta accttacgta
     6061 acaggaggta acacatgggc gcaacactcg gcagatggcg caggaggcta ttcctgctgg
     6121 cgtgcggaag ctactggacg gtcctcgtgc tggttctgtt cggaccgccc accattgccg
     6181 cttggcgcgt ctctcgtccg gatggcggac acggcgtcat caacgcctca ctcagcggag
     6241 ccactctgag catcgccatg agtagcagtc acaccgctcc atggagtgcc tccatcggat
     6301 tgtggacgat cgcattctgg ctcgtcggac cgccccttgt gctctggctc gcactgcgag
     6361 gtattcagca acgagatccc atgacgccgc ttcgcacgac gcatcgatga ggcatgctcg
     6421 cgcgcaatca ctcgcaggct agcgactgca cgccgcggga atgacggctt gatggccgct
     6481 tagagacacg attcgatccg ccgcgctcgt caatccagcg cggagcgaac gaccggtatc
     6541 gcttgtgaca atgccgttac acgacattcg tcatttcgcg gtgtcggtcg ttctagcttt
     6601 cagcaacgac atggacagca tcgaaagaat ccgcggaatg agcggcctcg gacgcgacac
     6661 agcggaaaac tcgtcgatca tcggatcgga cctgggcgat cgcgcttact cccttgtgac
     6721 gacggcgttc gctgtgtgca taccggtgct gctgatcgcc atcgccgtcg aaatcggacg
     6781 cgctgcatgg cctgccctgc accagttcgg attcggattc cttacgtcga gcgagtggga
     6841 cgttcccgcc ggaaagttcg gtgcggcacc ggccatcttc gggactgtgg tatcgtcgct
     6901 gatcgcgctg ttgattgcaa ctccgctcgc gctcggagtc gcgatattcc tttccgagtt
     6961 cgcgccgcgc tggctgcagc aacctgtcgc cttcctcttc gatctgctcg ccgcgatccc
     7021 gagcgtcgtg tacgggctct ggggaatctt cgttatgatt ccactgttgc gcgaggacgt
     7081 ggtgccattc ctgcgcgaca cgctccacct cggtgcgaca ccgctattcg ccggaccggc
     7141 gtacggcccg agcatgctgg cagcgggaat cattctcgcc atcatggcgc tcccatacat
     7201 ctccgcggta tcacgcgagg ttctccgcgc cgtaccgcgc tctcaacgcg aggcggcact
     7261 ggcactcggt gcaacacgtt gggaagtcat tcgggacgcc gtcataccga atgcgcgctc
     7321 aggaataatg ggcggcgtga tcctcggcct cggccgcgca ctcggcgaga cgatggcagt
     7381 gacgatggta atagggaatc gggcggagat ttcgtcatca ctgctcgctc ccggctacac
     7441 catggcatcg ctcatcgcaa atgagttcag cgaagctaca agcgatctgc acctgtcggc
     7501 gctcatggcc gtgggcgcgg tactgttcgc gataacgatc atcgtcaatg cgatcgcgcg
     7561 ctggctcgtg tggagtgtct ccgtgaggaa cgaagcatga gcgcggccgt actagcgcgc
     7621 tcgacgcgca ggaatcgcct caggcgccgc ggcgtgagcg gcctcatggt aacgctcacc
     7681 tacctggcgg cggcgatcgc gacgctgccg ctactcctta tcgtcataca tatcgtaagg
     7741 ctcgctgccg gagcgatcag cgtcgatctg ttcacgaaga tgccacagcc cgtcggcgaa
     7801 tcgggcggcg gaatggccaa cgcgatcact ggtacactga tcctgatcgg catcgccgcg
     7861 gcggtcggcg tgcccattgg catcggcgcc ggattgtacc tcgccgacca caagcgaacg
     7921 ccgcttgcaa ataccgtacg gtttctgtcc gacgtgctga acgggatccc gtcgatcgtg
     7981 atgggtatct tcgcatggca gttgctggta cggccagtcg gccacttctc ggcgctctcc
     8041 ggcggtgtcg cactcggcgc gatgatcatc ccgctcgtga cgcggacgac tgaggaattg
     8101 atccgaaccg tccccaactc gctgcgtgaa gccgcgctcg cactcggata tcagcgctgg
     8161 cgcacatcgc tcagcgtgat gctgcgcacg gcaatgccgg gaattgtgac aggagcgctg
     8221 gtagcgatcg caagaatcgc cggcgagact gcgccgcttc tatttaccgc attcggcaac
     8281 cagttctggt ccacctcgct gcggcagccg atcgcggccc tgcctttaca gatcttcacg
     8341 tacgcgatca gtccgtacga cgaatggcac tcgctcgcat gggcgggcgc actcgtcctg
     8401 atcggcatcg tgctcatcat aagcatcgcg gcccggctcg ccacgcgttc gcgattcgga
     8461 gcggtcgttg actgaaccac gagttgtcgc acttcccggc gatcccggca tcgatggccg
     8521 attttccgcg atcgagccgg acttcgctgc agagcgcgag ttgccggtcg cgcaacatgt
     8581 attccctaat gccgaccgtc gcatcgcacg ctccggcacg cgcgcggacg tggcgcgcct
     8641 cgaagcaacg ggattgaacg cgtactttgg ccggcaacac gcggtgaaag atgtaacgct
     8701 cgcactcgaa ccacgcagtg tcaccgcgat catcggaccg tcaggttgcg gtaagtcgac
     8761 gttgctgcgt tgtctcaatc gcatgcatga aaccgtgccg ggcgctcgta ctacagggag
     8821 cgtgacgctg gacggcgagc agctgtacgg cgacggaacc agcgccatcg ccgtgcggcg
     8881 acacatcggc atggtcttcc agcgccccac gccgtttccg acgatgtcga tccgggataa
     8941 cgttgctgca ggactgaaaa ttcacggcgg caccccgcca cgcgcgcgat tcgatgacat
     9001 cgtcgaggac gcgttgcgtc gggcggccct atggaacgag gtaaaggatc gcctcggcac
     9061 cggtgcgagc gcactctccg gcggacagca gcagcgactc tgcatcgcac gcgcgcttgc
     9121 tacgaggcca cgcgtgctgt tgctggacga accgacagcc tcgctcgatc ctgccagcac
     9181 gcagaagatc gaagagctcg tctacgagct tccttccacc gtcacagtgg ggatcgttac
     9241 ccacaacatg caacaggcgg cgcgcgtctc gcatagaaca gcgttcatgc tcgacggtga
     9301 gctgatcgag accgcaccta ccagagcact gttcacagca ccgcgcgacg tgcgcaccga
     9361 agcatatatc accgggaggt tcggatgagc gcagtcgccg atcgaattga cgtaagcgag
     9421 ccaccgacag ggacgataga ggcatccggg ttttccttct tctatggcag gaagcaggcg
     9481 cttttcgacg tgtcgctcgc aatcgagcct cgcagcatca ccgctctcat tggaccgtcg
     9541 ggatgcggga agtcgacctt ccttcgatcg atcaatcgga tgaacgacac gatcccggga
     9601 acgcgccagg aaggtgcgat gcttctggac ggcacagacg tttatgcgcg tggcacggat
     9661 gttgtcgcgc ttcggcaacg cgttggcatg gtttttcagc gctggaatcc gtttccgacc
     9721 tccatctacg acaacgttat ctacggtccg cgcatcaacg gcgtaacatc gcgctcccag
     9781 ctcgacgaac tcgccgaaga tgcactgcgc cgcgccgcac tgtgggacga ggtgaaggac
     9841 cgcctgcgca ggagcgcgct cggcctttca ggcggacagc agcagcgcct gtgcatcgcg
     9901 cgcgcgctgg caaaccaacc ggaggtgctc ctgctcgatg agccggccag tgccctcgac
     9961 ccgatcgcga cccgcaaggt tgaacaactg cttcacgagc tcaagtcgga gctgacgata
    10021 gtcattgtca ctcacaacct gcaacaggcg gcgcgcatct cgacgcgcac cgcattcttt
    10081 ttcctgggcg agctggtcga ggcggatagt acagatagaa tcttcacgcg tccgcgcgag
    10141 gatcgcaccg aggcctacat aaccgggaga ttcggatgac cgcccttcag gacgctccga
    10201 acggatttcg ccactttcac gatcagatcg acgagctcaa ggctcggctg ctcacgatgt
    10261 cgacgcgcgc cgaggagatg atcgagcagg cggtggacgc gctgctccac aacgatcatg
    10321 gaatcgccga gatggtcgtc acgagtgacg ccgagctcaa cgcgcttgaa gtggagatag
    10381 aagaacgcgc cgttgcgctt cttgcgttgc agcagccgat ggcgcgtgat ctccgattta
    10441 ttgtaggtgc gatccgggta tcgagcgacc tcgaaagaat cggagatcat gcggtaaaca
    10501 ttgcgcagtc gtcgctgcga ttgatcgagc agcgcgcgac cctcgttccc gatccggaga
    10561 tcgaggacat ggcacgccgt gcgcgaatca tgctgagcga ctcgctcgat gcattcctcc
    10621 gcagcgacgg cgcgctgggc agaaaggtat gccaggccga cgacgccgtg gacgcgctgc
    10681 atgattccat cttccgaatc ctgctcacac acatgatggg tgacgctcgc accattacgc
    10741 catcgctcga gttgctcctc gtgagccgga atctcgagcg cgtggcggat ctcgccacca
    10801 acatcggcga ggatgcagtg tatctcgcag aaggaaagca gatcaagcat cacttcgaag
    10861 actgacgcga actcgttcgg cgaacgcatc gggcgaacgc atcgggcgaa cggcgttaca
    10921 tttcgggtta tgacgtgccc ggagatgtaa atgccgaacg aagctgatca gacgtcacct
    10981 ctcgcccaat cgcgacggcc cgcgccgcgt gcggacgacg ttcgcatcgc ggcgatcggc
    11041 atcggctcga attcaattcg gcagatagtc gccgacgtgt ctcccgacgg cgaaatacgc
    11101 gtcgtcgatg agatgaaggc ggctccgcgg cttggtgagg gagtcggcga aaccgggcgt
    11161 ataggagaag ccgcgatccg caacgcgctg gacgccctgc tccgcatggc tacccttacc
    11221 cggcagatgg gcgtcgtgcg cactgaagca gtcgcgacca gtgcggtgcg agatgcggag
    11281 aacggggcgg aattcatcgc agccgttcgc gatactaccg ggctatcggt tcgcattctg
    11341 gatggcgacg aggaagcgct gttgtcatac cgaagcgcgc tggcgcactt cgacctcgcg
    11401 accggccggg cggtggtgat ggacatcggc ggcggatcgc tggaactggc gttaagcgca
    11461 gatggcctgc tcgacggtct gatgtcgttc ccgatgggcg ccatcacgat gacggagcga
    11521 ttcttcggca agaaccgcgg gcgcaaggag ctcgaagagc tgcgccgctt cgcacgcaag
    11581 gagttgcgcg ctgcagtgtc ccgtcgtgac tggcacggag ctcgcctgat cggttcgggc
    11641 ggcacgttca cgaacctcgc cggcatgatc ctgtcgcgcc agggaatggg gcgcgcatcc
    11701 ggcgttcacg gtacgatcgt gacacgcgcc gagctggagc acgtgctcga tctgttgcag
    11761 gggatgtcgc catcggagcg gcagacagtg ccgggcctgt cacccgcccg tgccgacatc
    11821 attatcgccg gcctcgcggt agcaaccgaa gtgatggcgc gcatcgaggc gcgcgagctg
    11881 gtggtgtctg cgtatggaat ccgcgagggg ctgttgctcg aagccgcgag cattacgccg
    11941 gtcgttgcag atgcgggaga tgcgcgcagt cgttcggtgc ttcaactcgc cgagcgctcg
    12001 cactacgaag cgccgcatgc gcaacaggtg cggcgccttg cactggagat cttcgatgcg
    12061 gttgccgcga agctggaact cgggccgggt gatcgcgcgg tcctcgcgga cgccgcgctg
    12121 ttgcacgata tcggctatca cataaacttc gaagcgcatc acaagcattc gtatcacctg
    12181 atcctgcacg ccgagctgct cggcatgacg ccggccgagc gcgttatggt tgcaaacgtt
    12241 gcgcgatacc atcgtggcgc cgcgccgcgg gccgagcacc gtgcgtacgc aggcctcgac
    12301 cgccagctga ggcgccgcat caaacgactc gctgcgatcc tgcggatagc ggacggactc
    12361 gatcgcggac atgcaagtgc gataaaggat ctggacgtgg agctcacgcg gaacgaagcg
    12421 atcatccggg ccattccggc gtccagctcg tacgacctgc ggctcgagct ctggggcgcg
    12481 acgcggaaaa gcgagctgct cgaggaagtg ctgggtattc cggtgcggat cgaggcggcg
    12541 tagctaacgc acttacagcc agcgtcgcac gcgaccgcgg taggcgaaat aatcagcgtc
    12601 aaacgcgtcg gacaggtagc gctcctcccg ctggatgacg aaccggatca tgacgaatat
    12661 cacgaacggc agcagcacca atggccataa ggtgccaagc agcgccgtcg caccgacgta
    12721 cgcgataagc agcccggtgt acatgggatt ccgcgtgaac cgatacggtc cagcggtcac
    12781 gagccgactc gcactgtgat gcgggatcac gctcgtgcgt gcaagccgga acgtaatgat
    12841 gccccatgcg gcaaggagca caccgattgc cacgagcgac acgccgacga ccagcagagt
    12901 ctccgaaccg ggggacgcaa gtggaagcgc aaatacgtac cggtccagtc cccatccagc
    12961 gatcaggccg atcaggaaga tgaacggcgg aggaaagcgc acgccgggat tcgagagcgg
    13021 ggtcgtcgac attcgggcct ccattggagc tgaagtatat cgattcccga aacgttcgct
    13081 cggcgcagcg cccgcggtcc ccgccatacg cgagggcgca cgatgtgccg cgccacgacc
    13141 ccgtgccttt ccaccgcgag acggccgctc cggagcggat cccggcgtac cgccagtgtc
    13201 ctatatttca gctgtgacca agcatgcatt aacggacgat ttcggctcgg tggaccgggt
    13261 cgggatcgaa gagcgggtgg ccaagttcac cacgcgcagc atcaagagga actccaagct
    13321 ctgggggctc cataccgccg tctcgatggt cgatctcacg accctcgaag gcaaggatac
    13381 cccgggcaag gtcgcgtcgt tgtgccagaa ggctcgccag cccagcgacg atgcaaccat
    13441 tcctgccgtc gccgccgtct gtatctatcc gtcgctgatc aaggaagcgc gcaagcatct
    13501 cgccgattcg ccgatcaaga tcgcttcggt agcgaccgcg ttcccgtccg gccagagctc
    13561 gctcaaggtg cggctgcagg aagtcaagta cgcagtgaac gccggtgccg acgagatcga
    13621 catggtgatc aatcgcggac tctttctctc gggcgaatac gatgcggtgc aggacgagat
    13681 tgccgcagtc gtcgaagctt gcggggatgc aacgctcaag gtgattctgg aagtctccga
    13741 gctcgagacg tacgacaaca tccgcgctgc ctcgttcatc gcgatgcagg tactacgcgc
    13801 cggtgatttc atcaagacca gcaccggaaa ggcggccgga agcgcgactc tcgccaatac
    13861 acaggtaatg ctggaatcga ttcgcgactt ctatctcgac accggaattc cgatcgggat
    13921 gaagccagcc ggcgggatca agactgcaaa acaggcgctg cactatctcg tcgccgtcaa
    13981 ggagaccctc ggcgacgcat ggctcaactc gtcgcgctat cgtttcggag cgagctcgct
    14041 gttgaacgat cttctccgcc agattcacaa ggagaagcat ggcgcgtatc aggcaccgta
    14101 ctacttctcc gaagccgctg agagctactg aagatggcaa tcacactgga tccatccgag
    14161 aacgaatcgg catcgaagga cccgaagaag aggcacggac gcaggcaggg gatgcccgag
    14221 ctgatcttcg gcgatctgtg ggagtatgac cccgccccgg aaaccgccga tccgcgcatc
    14281 cgtcagcgct acgatctgtt catcggcgga cgtttcatcg cgccgcagtc gggcgaatac
    14341 ttcgcatcga tcaatccggc gaccgagcag actgtaacgg agatcgcact cgcgagtgcg
    14401 gccgacgtcg actccgcata catggccgcg caactcgcgt atcagactgt gtggcgcgac
    14461 atgccgggcc gtgagcgcgg aaagtacatc tatcgcattg cgcgcctgtt acaggatcgc
    14521 gcgcgcgagt ttgcagtcgc cgaatcgatc gatggcggca agccgattcg tgagtcgcgc
    14581 gacttcgacg ttccaatggc tgcggcgcac tttttctatc acgcaggctg ggccgacaag
    14641 ctggcgtacg tcgcaccggg gcgcaccgtg gagccaatcg gtgtggtcgg ccaggtaatt
    14701 ccgtggaatt tcccactgct catgctcgcg tggaagatcg cgccagctct ggccgcggga
    14761 aattgcgtgg tgctcaagcc agcggagacg acgtcggcaa cggcgatgaa atttgcggag
    14821 ctgttgcagg aagccgagtt gcccgacggc gtcgtgaaca tcgtcacggg agccggagaa
    14881 actggcgctg cgctcaccgg ccatccggcc gctcgcaaga tcgccttcac cggatcgacc
    14941 gaagtcggca agctcatcat gcggcagctc gccgagcgtg gcacgcgcat gaccatggag
    15001 ctcggcggca aggcggcgaa cgtcgttttc gaggattcac cgatagatca ggccgtcgag
    15061 ggtgtggtca acggcatctt cttcaaccag ggccacgtct gctgcgccgg cagtcgtctg
    15121 c
//
LOCUS       DATIMD010000359         3851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3315326, whole genome shotgun sequence.
ACCESSION   DATIMD010000359 DATIMD010000000
VERSION     DATIMD010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3315326"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..235)
                     /locus_tag="VLI40_08025"
     CDS             complement(<1..235)
                     /locus_tag="VLI40_08025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97162.1"
                     /translation="MKPNLDFAATGSSARLTPPITIVPDVGWRMPAIMQGGTLRAVGT
                     MDELRAGDRDARGLEDIFLRLTGETAARSALDAL"
     gene            135..755
                     /locus_tag="VLI40_08030"
     CDS             135..755
                     /locus_tag="VLI40_08030"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU97163.1"
                     /translation="MIAGILQPTSGTIVIGGVSLAEDPVAAKSRLGFIPDRPFIYEKL
                     TGTEFLRFVAGLYGQGGDEIDRRGEELLALFDLVDWKDELVESYSHGMRQKLIIASAF
                     VHRPEVIVVDEPMVGLDPKAARLLKDLFRTYVERGNTIVMSTHTLEVAETLCDRIAIV
                     QNGRIAAMGTMAELRSNTGYDSGLEDIFLRLTGEKAARTALEVLSV"
     gene            820..2439
                     /locus_tag="VLI40_08035"
     CDS             820..2439
                     /locus_tag="VLI40_08035"
                     /inference="COORDINATES: protein motif:HMM:NF028259.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97164.1"
                     /translation="MARRGSRGRGARIVLLSVIGAIFWLCVFGITYRLLTYFRNIPEI
                     GTLLAAKLLGLVLISFLGLLLLSNVITALSTFFLARDLDLLVGTPVDWLSVYGAKLTE
                     TLVNSSWMVVLMAFPIFTAYGIAYDGGWWYPLVAIAAVIPFLVIPAAIGAAVTLLLVN
                     IFPARRTRDLLSVITVLAAAGVILAFRLLRPERLARPEGFRSLVDFLAVLRTPTSPWL
                     PSDWVQNGVLGWLRYEPDALPFYLLWSTAAAFVVIGAVLHHALYAAGFSKSQEGSGRS
                     GTRGRARFHALLNILPATRRELVLKELRVFFRDTTQWSQLILLVVLVVVYVFNIRFLP
                     LRGDGITFFLANIVPFLNLVLAGFVLASIAARFVFPSVSLEGRTWWLLRASPLSMRDL
                     LWAKFWVGTVPLLVLALAIVFTTDVLLQVSEFMTAVSIGTITLLTFAISGLAIGAGTI
                     FPQFETENAAQIPTSFGGLIFMMTSISLIGAVIVLEARPVYTYLLARSFGTPIDSTDM
                     ILGFSAAAALCVAATLAPIHVAVRRLNALEL"
     gene            complement(2448..3506)
                     /locus_tag="VLI40_08040"
     CDS             complement(2448..3506)
                     /locus_tag="VLI40_08040"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HSU97165.1"
                     /translation="MPTFTGRAAAQGTIAGAVRDSTGVGINGAKVSVTGSAVSAESDD
                     SGAFVLHGLPPGPASVHVRRLGFAPASVDVAVTSGTTTHIDVAIREVAHALKPVVVNA
                     RRPRHYEGYLAGFYQRRDQGFGRFITGDEIAKQAPMRTTDMLRMVPGMHITTSDAGDS
                     HVRIRGNGCWPSVWIDGTPANAAEFDVDWVAPSDIAGIEIYSSIATVPPEFVDPLGPR
                     LCGTIVIWTRQGEPKKKRTITAAQLAELVASLKVYTADQVDVPARPDSSALAAPLYPD
                     AFYKQRVPGRVLTEFVVDTAGRPEPETIGIVSSTDPLFAASVVRALLEARFVPARLDG
                     HPVRQIVQQPFSFVAPTL"
     gene            complement(3599..>3851)
                     /locus_tag="VLI40_08045"
     CDS             complement(3599..>3851)
                     /locus_tag="VLI40_08045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97166.1"
                     /translation="YQTLSIAGAALLLIGFVSLQTGRMRNDGAAFNVLNFIGSGLLAW
                     VAIHDRRAGFIILEVVWALASLPALRRALIAKTTERKML"
BASE COUNT          689 a         1183 c         1178 g          801 t
ORIGIN      
        1 tcagcgcgtc gagtgcactg cgcgcagcgg tctcgccggt gagacgaagg aagatgtcct
       61 cgagaccgcg cgcgtcgcgg tcgcccgcgc gcagctcgtc catcgtgccc accgcgcgca
      121 gcgttccgcc ctgcatgatc gcgggcattc tccagccaac gtccggcacg atcgtgatcg
      181 gcggtgtgag cctggctgaa gatcccgtcg cggcgaaatc aagattgggt ttcatccctg
      241 atcgcccgtt catttacgag aagctcaccg ggactgaatt cctccggttc gtcgccggtc
      301 tttacggcca gggcggagat gagatcgacc gacgtggcga ggagctgctc gcgctcttcg
      361 atctcgtcga ctggaaggat gagctggtcg agagctacag ccacggcatg cgccagaagc
      421 tgatcatcgc cagcgccttc gtgcaccgtc ccgaagtcat agtcgtggac gagccgatgg
      481 tcggactcga tcccaaggcg gcgcggctgc tcaaggatct tttccggacg tacgtggagc
      541 gtggcaatac gatcgtcatg tccacccaca cgctcgaagt agcagagacg ttgtgcgaca
      601 gaattgcgat cgtccagaat ggcaggatcg cagccatggg aaccatggcc gagcttcgca
      661 gcaataccgg ttacgattcc ggactggaag acatcttcct gcgtctgacc ggcgagaagg
      721 cagcgcgcac ggcgctcgaa gttctctcgg tctgactgca aggtgatggt cggccagctc
      781 ctgcatgtac tgtctcccaa agtgcaatcg cttcgcgcgg tggcgcgacg tggatcacgc
      841 ggccgcggcg cgcgaatcgt tctgctgtcg gtcatcggcg caatattctg gctgtgcgta
      901 ttcggtatca cgtaccgcct gctgacgtat ttcaggaaca tcccggagat cggcaccctg
      961 ctcgcggcga agctgctcgg gctcgtgctc atcagctttc tgggactgct gctgttgtcc
     1021 aacgtcatca ccgcactgtc gacgttcttt ctcgcacgcg atctggatct tctggtcgga
     1081 acgccggtcg actggttgtc cgtctacggc gcgaaactca cggagacgct ggtgaattcg
     1141 agctggatgg tcgtgctgat ggcattcccc atcttcacgg cgtacggaat tgcatacgac
     1201 ggaggctggt ggtatccgct cgttgcgatc gccgctgtga ttccattcct cgtgattcca
     1261 gcagcaatcg gcgcggccgt cactctcctc ctcgtcaaca tctttccagc gcggcgcacg
     1321 cgggatcttc tgagcgtgat cacggtgctt gccgccgccg gcgtcatcct cgcgttcaga
     1381 ttactgcgcc cggagcgcct cgcgcgaccg gaaggctttc gctcactcgt cgattttctc
     1441 gcggtactgc gcacgccgac atcgccgtgg ctgcccagcg actgggtgca gaacggagta
     1501 cttggctggc tgcgctacga gcctgatgca cttcccttct atctgttgtg gtcgaccgcg
     1561 gcggcattcg tcgtcatcgg cgcggtcctg catcacgcgc tctacgcagc gggattcagc
     1621 aaatcacagg aagggagcgg tagatcgggt acgcgcggtc gcgcgcgatt ccatgcgctg
     1681 ctgaacatcc ttcctgcgac gcgtcgcgag ctggtgctga aggaactgcg tgtattcttc
     1741 cgcgatacca cgcaatggtc gcaactgatc ctgctggtcg tacttgtcgt cgtgtatgtg
     1801 ttcaacatcc gctttcttcc gcttcgtggt gacggcataa cgttcttcct cgccaacata
     1861 gttccgttcc tgaatctcgt actggcggga ttcgtgctcg cgtcgatcgc ggcgcgattc
     1921 gtatttccgt ccgtgagtct ggaggggcgc acatggtggc tgttgagggc aagtccgctc
     1981 tcgatgcgcg atctgctgtg ggcgaagttc tgggtcggca cggtgccact tctcgtgctc
     2041 gcgcttgcga ttgtcttcac gactgatgtg ctgctgcagg tgagcgagtt catgacggcc
     2101 gtatcgatcg gaaccatcac gcttctgaca ttcgcgatat ccggcctcgc gatcggagcg
     2161 gggaccatct tcccgcagtt cgagacggag aacgcggcgc agatcccgac gtcgttcggc
     2221 ggcctcatct tcatgatgac ttcgatctcg ctcattggcg ccgtaatcgt gctcgaagcg
     2281 cgaccggtat acacttatct cctcgcacga tcgtttggaa ctccgatcga ctcgaccgac
     2341 atgatactcg gcttctcggc tgcggcagcg ttgtgtgtcg cggcaacgct ggcaccgatc
     2401 cacgtggcag tgcggcggct gaacgcgttg gagctatagc gtcggagcta tagcgtcgga
     2461 gcgacgaagc tgaacggttg ctgaacgatc tgtcgaacgg gatggccgtc cagccgcgca
     2521 ggaacgaacc gcgcctccag aagcgcccgg acgaccgacg ccgcgaaaag cggatcggtt
     2581 gacgacacga tgccaatcgt ttccggctcg gggcgtcccg cagtgtcgac cacgaactcc
     2641 gtcagtacgc gtccgggaac acgctgtttg tagaaagcat cgggatacag cggtgcggcg
     2701 agcgcggacg agtcgggccg cgcgggtacg tccacctgat cggccgtata caccttgagg
     2761 ctggccacga gctccgcgag ttgcgctgcg gtgatcgtcc ttttcttttt tggctcgcct
     2821 tgccgggtcc agatgacgat cgttccacaa agtctggggc cgagcggatc tacgaactcc
     2881 ggtggaacgg tggcgatgct cgagtagatc tcgatgccgg caatatcact tggcgccacc
     2941 cagtcgacat caaactcggc agcgttggcc ggcgtgccat cgatccagac cgatggccaa
     3001 caaccattac cgcgaatgcg aacgtgagaa tcgccggcgt cgctcgtggt gatgtgcatc
     3061 cccgggacca tccgcagcat atccgtggtt ctcatcgggg cttgcttcgc aatttcatca
     3121 cctgtgatga agcgtccgaa gccctgatcc cgtcgctggt aaaaccccgc cagatagcct
     3181 tcgtaatggc gcggtctccg ggcattgacg accaccggtt tgagtgcgtg cgccacctcc
     3241 ctgatcgcga cgtcgatgtg cgtcgtcgtg ccactcgtga cggcgacatc gacggacgcc
     3301 ggagcgaagc ccagccgccg cacgtggacg gatgccggtc cgggaggtaa tccatgaagg
     3361 acgaatgcgc cactgtcgtc gctctcggcg ctcaccgcgc tgccggtgac cgatactttc
     3421 gcgccattga ttccaacacc ggtcgagtct cgcacagcac cggcgatggt accctgtgcg
     3481 gcagcgcgac cagtgaacgt cggcaacgcg cccatgagca ggaggacagg cagtattaca
     3541 gccgaactat ttgggatccg cacgaatgac cggcgcatcg gaacctccgg gatagtacct
     3601 acaacatctt tcgttcggtg gtcttcgcga tcaacgctcg acgcaatgcg ggcaaggaag
     3661 cgagcgccca cactacctcg aggatgatga atcctgcacg tcggtcgtga atcgcaaccc
     3721 aggcaagcag cccggatccg atgaaattga gcacattgaa tgccgcgccg tcatttcgca
     3781 tcctgccggt ctgtaaggaa acgaatccga tgagcaacaa tgctgcgccg gctatcgaca
     3841 gcgtctggta g
//
LOCUS       DATIMD010000360         3047 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5342745, whole genome shotgun sequence.
ACCESSION   DATIMD010000360 DATIMD010000000
VERSION     DATIMD010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5342745"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VLI40_08050"
     CDS             complement(<1..285)
                     /locus_tag="VLI40_08050"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC family ATPase"
                     /protein_id="HSU97167.1"
                     /translation="MKINRLRMQNFRQHARTEMTFDRGITAIIGPNGSGKTTVLEAIA
                     WALYGQPAIRGQRDGVRFLGAGQRAPVEVELDFELGGHRYRVKRGLTTASL"
     gene            complement(310..1512)
                     /locus_tag="VLI40_08055"
     CDS             complement(310..1512)
                     /locus_tag="VLI40_08055"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair exonuclease"
                     /protein_id="HSU97168.1"
                     /translation="MRLVHLADLHIGYRQYQRLTPAGINQREADVAGTFKRAIDRTIE
                     LRPDFVLIAGDVFHSVRPSNPAILHAFLQFARLVSSLPDAKIVMVAGNHDTPRTAETG
                     CILRLFSPLGIIVVEGDAQRLEFPEQGVSILAVPDMPSGIPALTPDPAAQRNILLLHG
                     EVEGVLPEYARRMERSSVEISRDQIEAPRWDYVALGHYHVHREVAPNAYYSGSIDYTS
                     ANPWGEIHEERAAGLHDPVRGGKGIIEWDLDTATHTFHPLTVSRPLVDLPRLDGAAMT
                     AAELDEAIRERVDDSRVPIDDNVARLVITNVPRHIARQIDPKAVRDVKRRALHFNLDV
                     RRPEVVHRSVSGAPGRRPSLSEILRDKLESRPISAEIDRAAFVSLGMEYLNQADSAAT
                     AIPVSDSL"
     gene            complement(1518..2309)
                     /locus_tag="VLI40_08060"
     CDS             complement(1518..2309)
                     /locus_tag="VLI40_08060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97169.1"
                     /translation="MIRGAGGVLPFVLVCGLAAAPLLAQTVTLKIAPPAGDTLRMQLE
                     QRFEMESGDPPETMSGEMRVWTRAIVLQRGPGYTDLLSVTDSVRVFPSNVALKPLREA
                     QRALEGRSVRLRVDESGGMNVGSGPDNVLGVGTQMPSMLPPHPVAVGHTWVRDMRVPL
                     STSGRSTADVRTTFRLDSLAGHGAVAYVSFHGAVTHDHAQDGDGTVGKTFGTIEGMMQ
                     VDRRLGWITDSQMVVSVVSDVQPLGRPPIHARMRIVQSLMELVGN"
     gene            complement(2313..>3047)
                     /locus_tag="VLI40_08065"
     CDS             complement(2313..>3047)
                     /locus_tag="VLI40_08065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97170.1"
                     /translation="EEDAQDLIFARVVSKLREHLERRDLGVKHVVVFVDELNKYAPSD
                     GPDTYVRKMLLDIAERGRYLGLVLFSAQQFRSQVHRRVVGNSGTSMFGRMDADELSAP
                     GYAVLSPATRTKLATLEKGQLMIRHPHFTQPIFVRFPRPAVMAGRLGAEQYPQGGEVP
                     LEAAVYRSLRVQDSSITLQAVEDAIGLHDEGDVLRALAVTLKERSGDVLGTFRARLPK
                     RITQSVQQRPQVAALRGAPNDDPYGA"
BASE COUNT          570 a         1032 c          900 g          545 t
ORIGIN      
        1 gagcgacgcg gttgtgagcc cgcgcttcac cctgtagcga tgtccgccaa gctcgaagtc
       61 gagctcgacc tcgacgggcg cgcgctgacc ggcacccaga aagcgcactc cgtcgcgctg
      121 gccgcgaatc gccggctgcc cgtacagcgc ccaggcgatc gcctcgagca ccgtagtctt
      181 gcccgacccg ttcggtccga tgatggccgt gatcccgcga tcgaaagtca tttcggtgcg
      241 cgcgtgctgc cggaagttct gcatgcgcag gcgattgatc ttcacagcga atcactcaca
      301 gcgaatcact cacagcgaat cgctcaccgg aatcgccgtc gctgcggaat cggcctgatt
      361 gagatattcc attccgagcg agacgaacgc ggcacgatct atctccgcgg agatcggtcg
      421 cgattccagc ttgtcgcgca gtatctcgga cagcgacgga cgtctgcccg gcgcaccact
      481 cacgctgcgg tgaacgacct ccggccgtcg cacgtcgaga ttgaagtgca atgcgcgccg
      541 cttcacgtcg cgcacggcct tggggtcgat ctgacgtgcg atgtgccgcg gaacgttggt
      601 gatcacgagc cgcgcgacat tgtcgtctat cggcacgcgc gaatcgtcga cgcgttcccg
      661 tatcgcctcg tcgagttccg cagccgtcat cgcggcgcca tcgagtcgcg gaagatctac
      721 cagcggtcgc gagacagtga gcggatgaaa cgtgtgcgtg gcagtatcca gatcccactc
      781 gatgattccc ttgccgccac gaacaggatc gtgcagtccg gctgcacgct cctcgtggat
      841 ctcaccccag ggattggcgc tggtatagtc gatggagccc gagtagtagg cgttcggcgc
      901 cacttcacgg tgaacatgat agtggcccag cgccacatag tcccagcgcg gcgcctcgat
      961 ctgatcgcgg ctgatctcga cgctggatcg ctccatgcgc cgcgcgtatt ccggcagtac
     1021 accttcgacc tcaccgtgca gcaacagaat gttccgctgc gccgccgggt ccggagtcag
     1081 cgcaggaatc ccgctcggca tgtctggtac cgcaaggatc gaaacaccct gctcgggaaa
     1141 ttccagccgc tgcgcatcgc cttcgacgac gatgattccg agtggcgaga aaagccgaag
     1201 aatgcagcca gtctccgccg tgcgcggcgt gtcgtgattt cctgcgacca tgacgatctt
     1261 cgcgtccggc agcgacgaaa cgagacgcgc gaactgcagg aatgcgtgca gaatcgccgg
     1321 attggacgga cgcacggagt ggaatacgtc gcccgcgatg agaacgaagt cgggacgcag
     1381 ttcaatcgtc cggtcgatcg cccgcttgaa cgtcccggcg acgtcggctt cgcgctgatt
     1441 gattcctgct ggagtcaatc gctgatactg acgatagccg atgtgaagat cggcgagatg
     1501 aaccagacgc atcgcgctca gttccccacc agttccatga gcgactggac gatgcgcatg
     1561 cgcgcgtgaa tcggcggacg ccccaatggt tgcacgtccg ataccacgct cacgaccatc
     1621 tgcgaatcgg taatccagcc caggcggcgg tccacctgca tcattccctc gattgttccg
     1681 aaggttttcc ccacggttcc gtccccgtcc tgcgcgtgat cgtgcgtgac ggccccgtgg
     1741 aaagatacgt aggctaccgc gccgtgcccg gccagtgaat caagacgaaa cgtcgtgcgt
     1801 acgtccgccg tgctccgccc gctggtgctg agcggcaccc gcatgtcacg tacccacgtg
     1861 tggccaaccg cgacaggatg cggaggaagc atcgacggca tctgcgttcc gacccccaga
     1921 acgttgtccg gaccgctgcc cacgttcatt ccgccgctct cgtccacgcg caggcgaacg
     1981 gaccgtcctt ccagcgcgcg ctgtgcctcg cgaagcggct tgagtgcaac gttggatgga
     2041 aagacccgca ccgaatcggt cacagagaga aggtctgtat atccgggccc tcgctgcaat
     2101 acgatcgcgc gcgtccagac gcgcatctcc cccgacatcg tttctggtgg atcgccggat
     2161 tccatctcga accgctgctc cagctgcatg cgcagcgtgt cgcccgcggg aggagcgatc
     2221 ttgagcgtaa ccgtctgagc cagcaacggc gccgccgcca gtccacacac cagaacaaat
     2281 ggcagcactc cacctgcgcc gcggatcacc ggtcaggctc cgtatggatc atcgttgggt
     2341 gcgccgcgca gcgcggccac ttgcggccgc tgctgcacgg actgtgtaat tcgcttcggc
     2401 aaccgagccc ggaaagtgcc gagcacgtcg ccagaccgtt ccttgagagt caccgcaagc
     2461 gcgcgaagca cgtcaccctc gtcgtgcagc ccgatcgcgt cttcgactgc ctgcagtgta
     2521 atcgacgaat cctgcacccg gagcgagcga tacaccgcgg cttcgagcgg aacctctccg
     2581 ccctgcggat actgctcggc gcccaaccgg cccgccatta ccgccggcct cgggaatcgc
     2641 acgaaaatcg gctgcgtgaa gtggggatgc cggatcatca gctgaccctt ctccagcgtt
     2701 gcgagcttgg tccgcgtcgc cggcgacagt accgcatacc caggcgcact caactcgtcg
     2761 gcgtccatcc tgccgaacat cgacgtacct gaatttccaa cgaccctgcg atgcacctgc
     2821 gaccggaact gctgtgcgct gaacagcacc agccccagat accgcccccg ttcggcgata
     2881 tcgagcagca tcttgcgtac gtacgtatct ggtccgtcgc tcggagcgta cttgttcagc
     2941 tcatcgacga atacaaccac gtgcttcacg cccaggtcgc gccgctcgag atgctcgcgc
     3001 aacttcgaga cgacccgcgc aaatatgagg tcctgcgcat cctcctc
//
LOCUS       DATIMD010000361         4504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3030333, whole genome shotgun sequence.
ACCESSION   DATIMD010000361 DATIMD010000000
VERSION     DATIMD010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4504
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3030333"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1166)
                     /locus_tag="VLI40_08070"
     CDS             complement(<1..1166)
                     /locus_tag="VLI40_08070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DnaB-like helicase N-terminal domain-containing
                     protein"
                     /protein_id="HSU97171.1"
                     /translation="MSSSLDTYSTPRSHEVSAGRDPYRDRTPPYSEAAEQAVLSAMLL
                     DAEALLRATEYVDESMFYRESHRRVFRAMLALSERGEVIDPLTLTEELSRKSELEAAG
                     GREYIAYLVDVVPTAANVEYHAKIVREKALRRRLIEVSTAIVSEAFDSALPAAELLDA
                     AEHSIFEVNQSRGTEGFTRVKELMYEAMERIEQLHLAGESVTGVASGFHDLDELTAGF
                     QPSELVIIAARPSMGKCLAHDSEIVLEDGSVETIETIFKGARQKMLTLDDLRWKFSLV
                     EPSAYIDDGMKPVYRVTTRLGRSIETTITHPFRTISGWQPLGELAEGDSIAVPREIGV
                     FGNKAARACEVKLLGYLLGDGTITGGPPRFTNSNPVLLRDFADAVGEFGGVVVG"
     gene            complement(1123..2091)
                     /locus_tag="VLI40_08075"
     CDS             complement(1123..2091)
                     /locus_tag="VLI40_08075"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: protein motif:HMM:TIGR00758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HSU97172.1"
                     /translation="MDGRERLRAYLEQRRELGESEFVLDNMSVDEALSAIDKLRSTAP
                     ARPAQPAQPARPAQAPAAPRVAAAQPAPKPAPKPAVAPARVSDRVPEVHEQSPNAAGD
                     RNHSAAGEEAMMTEKQGLVVGNANGTLFEQNPFHSVRSIDALAKLIEDCTRCPLYKTA
                     KHAVPGSGDQTADFMCVGEAPGANEDETGQPFVGQAGGLLTKILAAIDLTRDQVFITN
                     VLKHRPPGNRNPAPSEVEACSPYLVRQIQMIKPKVILALGTFAAQTLLETKTPIGKLR
                     GAVHRYYGIPLIVTYHPAALLRNPAWKRPTWEDVKLARHVLDSAKS"
     gene            complement(2081..3283)
                     /gene="coaBC"
                     /locus_tag="VLI40_08080"
     CDS             complement(2081..3283)
                     /gene="coaBC"
                     /locus_tag="VLI40_08080"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HSU97173.1"
                     /translation="MRDIRGRRVVLGVTGGIASYKSVSLARLLAQDGAEVDVVMTRGA
                     QQFVGAVTFEGVTGRRVHSDLFESGEALAHIRLAREAQVIVVAPATADFLARAAHGRA
                     DDLLCAMLLAARCPVLIAPAMNDRMWSHRQTVLNAQHLREIGYDVIEPATGPLAFDEG
                     EGPGRMPEPETIAARVERALRTGSALAGKRIVVTAGSTRESIDPVRFISNHSTGRMGI
                     AIARAAWARGADVTLIAGAIEVPIPTGVRAVRVTNTAEMSAAVNDAIANADALIMAAA
                     PSDFRPAEVAPEKIKKAHAPSSIPLAATTDILASTIARRPANLVTVGFALETQSLIEN
                     ARAKLASKQLDMIVANRAGVAGEGFGADTNRVMLLSPAGEEDLPLMSKDEVAESLLDR
                     IEVLLNGR"
     gene            complement(3286..3495)
                     /locus_tag="VLI40_08085"
     CDS             complement(3286..3495)
                     /locus_tag="VLI40_08085"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HSU97174.1"
                     /translation="MRVYTPDDVAEHATNKYLGVLVAAKFARVLNEFPRDRSAPGERK
                     LTTRALDELAGGEINYHVVPRRRQE"
     gene            complement(3508..4143)
                     /gene="gmk"
                     /locus_tag="VLI40_08090"
     CDS             complement(3508..4143)
                     /gene="gmk"
                     /locus_tag="VLI40_08090"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HSU97175.1"
                     /translation="MRCFPVILSAPSGAGKTTIARRLLEVRNDVGYSVSATTRAPRPG
                     EVDGIAYHFLSTEQFERAVQNGEFAEYARVHGNMYGTLRREVERVVASNRNVVMDIDV
                     QGAMQFSASFPDAVRIFVLPPSGETLVARLKDRGTEDSATIATRLRDAIGEIGVIGEF
                     EYVVVNDQLERAVAQVSCIIDAECLKRVNSPQSARIAAETISALEAELLHF"
     gene            complement(4140..>4504)
                     /locus_tag="VLI40_08095"
     CDS             complement(4140..>4504)
                     /locus_tag="VLI40_08095"
                     /inference="COORDINATES: protein motif:HMM:NF019940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1732 domain-containing protein"
                     /protein_id="HSU97176.1"
                     /translation="ERAPARLVEQRNRLQVAVAELAAGVAVDPQRLAQEIAILADRMD
                     ISEELNRFGAHIAAFRAALAEKRDAGVGKRLGFLIQEMLREANTTGSKASDAVILTDV
                     VAIKEELERLREQSENVE"
BASE COUNT          796 a         1541 c         1305 g          862 t
ORIGIN      
        1 ttgccgacga cgacgccgcc gaactcaccc acagcgtcgg cgaagtcgcg caatagcaca
       61 ggattcgagt ttgtgaagcg cggcgggcca ccggtgatgg ttccatctcc cagcaggtat
      121 ccaagaagct tcacttcaca ggctcgcgct gccttgtttc caaacacacc gatctcgcgc
      181 gggacggcaa tcgaatcgcc ctcggcgagc tcgccgagtg gctgccatcc acttattgtc
      241 cggaacggat gcgtgatagt cgtttcgatg cttctgccaa ggcgcgtagt tacgcggtac
      301 accggcttca taccgtcgtc gatgtaagcc gagggttcca ccaggctgaa cttccagcgc
      361 aagtcatcca gggtaagcat cttctgacgc gcgcccttga atatcgtctc gatcgtctcg
      421 acgcttccgt cctccagcac aatttccgaa tcgtgagcga ggcactttcc catcgacggt
      481 ctcgccgcaa tgatcaccag ctccgacggc tggaatcccg ccgtcagctc atccagatca
      541 tgaaacccgc tcgccacacc cgtaaccgat tcacccgcga gatggagctg ctcgatgcgc
      601 tccatcgctt cgtacatcaa ttccttgacg cgcgtgaagc cctcggtgcc gcgactctgg
      661 ttcacttcga agatgctgtg ctccgccgcg tccagcagct cggcggccgg cagtgcggaa
      721 tcgaacgcct cgctcacgat tgcagtcgag acttcgatga gcctgcgacg cagcgccttc
      781 tcgcgcacga tcttcgcgtg gtattccacg ttcgccgcgg tcggcaccac gtcgacgaga
      841 tacgcgatgt actcgcggcc gccagcggct tcgagctcgc tcttgcgcga cagttcttcc
      901 gtgagcgtga gcggatcgat tacctcgccg cgctccgaca gcgccagcat cgcacgaaac
      961 acgcgacgat gcgactcgcg atagaacatc gactcatcga catactcggt cgcgcgcagc
     1021 agcgcctcgg cgtcgagcag catcgccgac aacaccgcct gctcggcggc ttcggaatac
     1081 ggcggcgtcc ggtcgcgata tggatcgcgg ccggcgctta cttcatgact tcgcggagtc
     1141 gagtacgtgt ctagcgagct tgacatcttc ccaggttggt cgcttccagg cggggtttct
     1201 cagtaacgcg gcggggtggt acgtgacgat gagcggaatt ccgtaatacc ggtgcacggc
     1261 accacggagc ttgccgatcg gcgtctttgt ctccagtaga gtttgcgccg cgaacgtccc
     1321 gagcgccaga atcactttcg gcttgatcat ctgtatctga cgcacaaggt aggggctgca
     1381 ggcctcgacc tcgctcggcg ccggattgcg gtttcccggg gggcgatgct tcaaaacgtt
     1441 ggtgatgaac acctgatcgc gagtcaggtc gatggccgcg agaatctttg tgaggagacc
     1501 cccggcctgc ccgacgaacg gttgtccggt ctcgtcctcg ttggcgccgg gagcctcgcc
     1561 gacgcacatg aagtcggcgg tctgatcacc gctacccggc acggcgtgtt tggcggtctt
     1621 gtacagcggg caacgcgtgc agtcctcgat cagcttcgcg agcgcgtcga tcgacctgac
     1681 gctgtgaaag gggttctgct cgaacagcgt cccgtttgca ttcccgacaa cgagtccctg
     1741 cttctccgtc atcatcgcct cttcccctgc cgcggagtgg ttccggtcac cagctgcgtt
     1801 cggcgactgc tcatgcactt ccgggacccg atccgacaca cgggcaggtg caacagcagg
     1861 cttaggagca ggttttggag caggctgggc cgcggcaacg cggggcgctg caggcgcctg
     1921 cgcgggacgt gccggctgcg cgggctgcgc cggtcttgcg ggcgctgtcg accgaagctt
     1981 gtcgatcgcg ctcagcgcct catctacgct catgttgtcc agcacgaact cggactcgcc
     2041 aagctcgcga cgctgctcca gataagcgcg caaccgctcc ctaccgtcca ttcaacaaca
     2101 cctcgattcg gtccagcaag gattccgcaa cttcatcctt ggacatgagc gggagatctt
     2161 cctcgcccgc cggtgagagc agcatcacgc gattggtatc cgcgccgaat ccctcgcccg
     2221 cgacacccgc gcgatttgcc acgatcatgt ccagctgctt gctcgcaagt ttcgcacgcg
     2281 cattctcgat cagagactgc gtctcgagcg caaatccaac ggtcaccaga ttcgcgggcc
     2341 gcctcgcaat agtcgatgca agaatgtcgg tcgtggcggc aagcggaatg gacgacggtg
     2401 cgtgcgcctt cttgatcttc tccggcgcga cttccgccgg acggaaatcg gacggcgcgg
     2461 ccgccattat cagcgcgtcg gcgttcgcga ttgcatcgtt cacagcggcc gacatctccg
     2521 cggtgttcgt cacacgcact gcacgcacgc cggtcggaat cggaacctcg atcgcacccg
     2581 cgatcaacgt aacatccgcg ccccgcgccc atgcggcacg cgcaatcgcg atgcccattc
     2641 ttccggtgct gtgattggag atgaaccgca ccgggtcgat cgactcgcgt gtcgagcccg
     2701 cggtgacgac gatgcgcttt cccgcgagag cggagcctgt gcgcagcgct cgctcgacac
     2761 gcgccgcgat cgtttccggc tccggcatcc ggcccggtcc ctcgccctcg tcgaacgcaa
     2821 gcggtccggt cgcaggctcg atcacatcgt aaccgatctc gcgcagatgt tgcgcgttca
     2881 acacggtctg ccggtgcgac cacatccggt cgttcatagc gggcgcgatc agcacgggac
     2941 aacgcgctgc aagcagcatc gcgcagagaa gatcatcggc gcgaccgtgt gctgcacgcg
     3001 cgagaaaatc cgctgtggct ggcgccacga cgattacctg cgcctcgcgc gccaatcgaa
     3061 tgtgcgcgag cgcctcaccc gattcgaaca gatcgctgtg cacgcggcgc ccggtcacac
     3121 cctcgaacgt aacggcgccc acgaactgct gggcgccgcg ggtcatgacc acgtcgactt
     3181 cggctccatc ctgcgccaga aggcgcgcca gcgataccga cttgtagctg gcgatccctc
     3241 cggtgacgcc gagtacgacg cgccgccccc ggatgtcgcg cagtgctact cctgccggcg
     3301 gcggggaact acgtggtagt tgatctcgcc acccgccagc tcgtcgagcg cgcgcgtggt
     3361 gagcttcctc tcgcccggcg ccgagcggtc gcgcgggaat tcattgagaa cgcgcgcgaa
     3421 cttggccgcg acgagaacgc cgaggtactt gttggtcgcg tgctccgcaa catcgtccgg
     3481 tgtgtaaact ctcattaact cattctccta gaagtgaagc aactccgcct cgagggcgga
     3541 tatcgtttca gccgcgatgc gtgcactctg tggtgaattc acccgcttga ggcattccgc
     3601 atcgatgatg cacgaaacct gtgcgacggc gcgctccaac tggtcgttca cgacgacata
     3661 ttcgaactcg ccaatcactc cgatctcgcc gatggcgtcg cgcagccgcg tcgctatcgt
     3721 cgcactgtcc tccgtaccgc gatccttcaa tctcgccacc agcgtctcgc cggacggcgg
     3781 aagaacgaag atccgaacgg catcgggaaa cgacgccgaa aactgcatcg caccctgaac
     3841 atctatgtcc atcacgacgt tgcggttgga agcgacgacg cgctccactt cccgccgcaa
     3901 cgttccgtac atgttgccgt gcactcgtgc atactccgcg aactcaccat tctgaaccgc
     3961 ccgctcgaac tgctcggtgc tcagaaagtg gtacgcgatt ccatccacct cacccggtct
     4021 cggcgcgcgc gtggtcgccg ataccgaata tccaacgtcg ttccttactt cgagcaatcg
     4081 cctcgcgatc gtggtctttc cggcgccgga cggcgccgaa agaatgaccg ggaaacatct
     4141 cactcgacgt tctcactctg ctcgcgcaat cgctcgagct cttccttgat cgcgacgacg
     4201 tcggtcagta tcaccgcgtc gctcgccttg ctacccgtgg tattggcctc gcgcagcatt
     4261 tcctgaatca gaaagccgag ccgcttgcca acgcccgcgt cacgcttctc ggcgagcgct
     4321 gcccggaacg ccgcgatgtg cgcgccgaac cggttgagct cctccgatat atccatgcga
     4381 tccgcaagaa tcgcgatctc ctgcgccagc ctttgcggat ccaccgcgac tcccgcggcc
     4441 agctccgcaa cggccacctg cagtctgtta cgctgctcca ccagtctcgc cggagcccgc
     4501 tcgc
//
LOCUS       DATIMD010000362         6253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4182898, whole genome shotgun sequence.
ACCESSION   DATIMD010000362 DATIMD010000000
VERSION     DATIMD010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6253
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4182898"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VLI40_08100"
     CDS             <1..507
                     /locus_tag="VLI40_08100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97177.1"
                     /translation="EYWARITVHARDDASSASPALEAAIDTSDATSARVRIAMETATV
                     LPVFFRKGAVSTGIAIGSADAVARRGMIDVRATLTRNGNSAFIGIAHLVVHDSSGHLI
                     ATADRQIAVYRTMRPRWTIAIPPGASLDGNTVAVSLSTDRHDVPRNLLLQAGPVATVI
                     AARREDTP"
     gene            complement(514..1842)
                     /locus_tag="VLI40_08105"
     CDS             complement(514..1842)
                     /locus_tag="VLI40_08105"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006206 - pyrimidine nucleobase metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HSU97178.1"
                     /translation="MIVPRLIERKRDGDNLTSAEWRELIHAYSAGDVPDYQLSALLMA
                     VFFRGMTRAETDALTDAMLSSGARLDLSDMTLPRLDKHSTGGVGDKVSLILAPLIAEL
                     GVAVPMMSGRGLGHTGGTLDKLESIPGFRTDLSLAAAREQLDRIGCALIGQTGEIAPA
                     DKKLYALRDATGTVEAIPLISASIMSKKLAEGLTGLVLDVKSGSGAFLPELDREIELA
                     KTMIELGADRGCPVVALVTAMDQPLGIACGNSIEVRESIEFLHGHPPPDLATVTYALG
                     AEMLLLAGIATTRDDAHARMREAIASGRAAERFRAIIAAQGGDPRVVDDVSLLPASPV
                     KIEYRAARDGIVQRVEPRAIGHGVVALGGGRRAMHDVVDPSVGFDIFVKRNVTVAAGD
                     VIAIIHAADDAGSAAGRDVLDTAISIGDAPVNALPLVSHRITSTGVEVLR"
     gene            1886..2656
                     /locus_tag="VLI40_08110"
     CDS             1886..2656
                     /locus_tag="VLI40_08110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97179.1"
                     /translation="MVHKLAVAHLVALSLAMPALSAGAQSAAALVARGDTAYDARNAT
                     AALDAYQKALAIDPNNYDALWRAARSQVDLALTESDADKRNAMYKAAQDESAHAVQVN
                     PSGADGHFLSAEALGRMALTLGARDRVKYAGKVRDQAMECLKIEPKHAGCLHVMGVWN
                     AEVMRLNGFTRMIARNFLGGQVFSQASWANARSFLEQAVANDPRRIVHRLDLAKVYAD
                     MGLPSLAKTEYQAVVSGELVDYNDPRYKAEAAEALKKL"
     gene            3161..3550
                     /locus_tag="VLI40_08115"
     CDS             3161..3550
                     /locus_tag="VLI40_08115"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU97180.1"
                     /translation="MSESGKLVLLVEDNEDNRIVYSTILKHFGYSVIEALNGEEGIAK
                     ARAQQPDLVLMDISIPVIDGWEATQVLKHDPATKHIPIIALTAHALASDREKAMEVGC
                     DGYLAKPCEPRAVVAEVQRFLGRPDAG"
     gene            3540..4544
                     /locus_tag="VLI40_08120"
     CDS             3540..4544
                     /locus_tag="VLI40_08120"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSU97181.1"
                     /translation="MPDEQTKRILVVDDHPDNIQLLRARLEARGYIVEEAADGEAALA
                     RVYTSPPPDLILLDVMMPKIDGLEVARRIKSDDSLPFIPVIMQTALDSTESMVQGFEA
                     GADDYIAKPVNFRELDARVRSLLRIQTLQSALEQRERELSAANAQLLVLSSTDVLTGV
                     ANRRALEERLHDMWEHSQRLHEPLSVVMCDIDHFKRVNDEYGHQVGDVVLQQFAHLLV
                     TEAREIDRVGRYGGEEFVLLLPGTVLDAAVTFAERIRACVEKREFTYDDGQTLHRTMS
                     CGIAAWPHPLVADQEALIKAADDALYVAKETGRNRVVRFDSREFNEHIAKNGKTDETI
                     "
     gene            4501..>6253
                     /gene="ligA"
                     /locus_tag="VLI40_08125"
     CDS             4501..>6253
                     /gene="ligA"
                     /locus_tag="VLI40_08125"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HSU97182.1"
                     /translation="MSISRKTERQTKQSSGGADSPSARAATLREILNRASHEYYVLDK
                     PTLSDAEYDRLFRELQQIETAYPDLRSADSPTRRVGAEVQSALVKHTHAVPMLSLGNA
                     FNDDELRAWEDRLIRIAGDDIARVGYSAELKIDGAAVSLTYEDGILVVGATRGNGTIG
                     EDVTANIRTVRDVPLRLTHAPRGRIEIRGEIYFPFDQFELMNEARVAAGEPVFANPRN
                     ASAGSLRQLDPSITASRPLRFFGYAVAFDDPAKLPFKTQSELLSALRSWGIPVAPHAL
                     RCATMDDVTAWAHRVEHELRAELNFAIDGGVVKVDSLRLQDDLGVVGGREPRWAIARK
                     FAPDIAETRLTAIEVNVGRTGQLNPYAVLEAVEIGGTTVRLATLHNEQLIRDKDLRVG
                     DVVQVKRAGDVIPQVIGPVPERRSGSEREWHMPSRCPICNTPVQRDADLAAIYCPNIA
                     CPGRQLEGMVYFASRGAMDIRGLSYARIEQLLNEGIVHDVADLYTLTADEVLALDGYQ
                     KKSATALIAAIQASRSQPLSRLLTGLGIPHVGETAARLLARHFGSLKALSSASADQIE
                     AIRGLGDVIAQSVASFFH"
BASE COUNT         1195 a         1986 c         1957 g         1115 t
ORIGIN      
        1 gaatactggg cgcgaataac ggttcatgcc cgcgacgacg cgtcgtcagc gtcgcccgcg
       61 ctggaagcgg cgatcgacac gtcggatgct acatcggccc gcgtccgcat cgccatggag
      121 acggcgaccg tcctgccggt cttctttcgc aagggcgccg tctcgaccgg cattgcgatc
      181 ggttccgcgg atgcagtggc acgccgcggt atgatcgacg tgcgcgctac gctcacgcgt
      241 aacggcaaca gcgcattcat cggtatcgcg caccttgtag tgcacgattc atcaggacac
      301 ctgatcgcga cggccgatcg tcagatcgcg gtttatcgca ccatgcggcc gcgctggacg
      361 atcgcgatcc cgcccggagc gtcgctcgac ggcaacaccg tcgctgtgtc gctctccacg
      421 gatcgccatg acgtaccgcg caatctgttg ctccaggccg gtcccgtcgc aaccgtcatt
      481 gccgcgagaa gagaggacac gccatgacgt cggctaccgt agcacctcga cccctgtcga
      541 cgttatacga tgcgatacga gcggcaaagc atttaccggc gcatcgccga tcgatatggc
      601 agtatcgagg acatcacgtc ctgccgccga gccggcatcg tccgctgcgt gaatgatcgc
      661 gatgacgtcg cctgctgcga cggtcacgtt ccgcttgacg aatatgtcga agcccaccga
      721 cggatctacc acatcgtgca ttgcacgccg gccaccgccg agcgcgacga cgccgtggcc
      781 gattgcccgt ggctccacgc gctgcacgat tccgtcacgt gcggcacggt actcgatttt
      841 cacgggcgac gccggaagca gcgacacgtc atccaccacg cgtggatccc cgccctgcgc
      901 cgctattatc gcccggaacc gctccgcggc tcttccgctc gcgatcgctt cgcgcatgcg
      961 cgcgtgggca tcgtcacgcg tggtcgcgat accggccagc agcaacatct cggcgccaag
     1021 cgcatacgtt accgtggcga gatccggcgg cggatgtccg tgcagaaact cgatcgattc
     1081 gcgcacttct atcgaatttc cacaggcgat tccgagtggc tggtccatcg ctgtaaccag
     1141 cgcgacgacc ggacagccac ggtccgcgcc cagctcgatc atcgtcttcg caagctcgat
     1201 ctcacgatcc agctcgggaa gaaatgcacc gctcccgctt ttgacgtcga gcacgagacc
     1261 ggtcagtcct tcagccagct tcttgctcat tatgctcgcc gagatgagcg gaatcgcctc
     1321 gacagtcccc gtcgcgtcgc ggagcgcgta caacttctta tcggctggtg cgatctcgcc
     1381 ggtctgcccg atgagcgcgc agccaatgcg gtcgagttgc tctcgtgcgg ctgcgagcga
     1441 caggtcggtc cgaaatccgg ggatcgattc cagcttgtcg agcgtgccgc ccgtatgacc
     1501 gagtccgcgg ccggacatca tcggcactgc cacgccaagc tcggcgatca acggcgcaag
     1561 tatgagcgac accttgtcgc ccacgccgcc ggtggagtgc ttgtcgagac gcggcagggt
     1621 catgtccgaa agatccagcc tcgcgccgct gctcagcatc gcatcggtca gcgcatcggt
     1681 ctcggcgcgc gtcatcccgc gaaagaagac cgccatcaac agcgccgaca gctgataatc
     1741 cggcacatcg ccggcggaat atgcatgaat gagctcgcgc cattcggcgg acgtaagatt
     1801 gtcaccgtcg cgcttgcgct cgataagccg tggaacgatc atcggggtat tctaagcaac
     1861 attcgcgttt ttggagatgt caatcatggt tcacaagctc gcagtcgccc atctcgtggc
     1921 gctgtcactg gccatgccgg cgctttcggc gggcgcgcag tccgcggctg ccctcgtcgc
     1981 caggggcgat actgcttatg acgcccgcaa tgcgacagcc gcactggatg cctatcagaa
     2041 agcgctcgcg atcgacccga acaactacga tgcgctgtgg cgcgccgcac gatcgcaggt
     2101 cgacctcgca ctgaccgagt cggacgcgga caagcgcaac gcgatgtaca aggccgcaca
     2161 ggacgagtct gcacacgccg tccaggtcaa tccgtcaggt gcggatggcc acttcctctc
     2221 cgcagaagcg ctgggccgca tggcgctcac cctcggcgcg cgcgatcgcg tgaagtatgc
     2281 gggcaaggtt cgcgaccagg caatggagtg cctcaagatc gagccgaagc acgccggatg
     2341 cctccacgtg atgggagtct ggaacgccga ggtcatgcga ctcaacggct tcacacgcat
     2401 gatcgcgcgc aactttctcg gaggacaggt cttcagtcag gcgagctggg ccaacgcgcg
     2461 gagttttctc gagcaggcag tggccaacga tccgcgccga atcgtgcatc ggctggatct
     2521 ggcgaaggtt tacgccgaca tgggtctccc ttcactcgct aaaaccgaat atcaggctgt
     2581 ggtctcgggc gaactcgtcg actacaacga ccccaggtac aaggccgaag cggcggaggc
     2641 tttgaagaag ctgtagggga aagaaaaagg gggcagagtg cactttcctt tttacgggaa
     2701 cgttcactct gccccctttt cctacgcgac ctcggccggg cgccgttgcc gggcgcgctt
     2761 ccgagcggcc ctgttcagct cctcgccaag ctgttcccac gggctgcggt gccacggccg
     2821 gtggcgcctg atctgccgac ccagcgcgag cctcgtgtga gccccggact gcggcgccgc
     2881 gagaagggcg attcccgcgc cgattacaac gcccgcggcg acgcctgcgc cgaccagggc
     2941 tacagagcgc caatccgcct ctcgcttgaa cggacggccg cgtggagtgg tgacggcgtc
     3001 agggcgtgtt ttgcgccgga gtttcggcct ccaaaagcgc cgcgagtgta cgccagatgt
     3061 ttcttcgggg gagtcgtgga tggtatccat tagccttatg agaactgaag ctggtaagaa
     3121 tcttgcttga gacggcgtgc aatacccgtg cgaggagtgg atgagcgaat ctggaaagtt
     3181 agtgctactc gtagaagaca atgaagacaa ccggatcgtc tactcgacga tcctcaagca
     3241 tttcggctat agcgtgatcg aggcgttgaa cggagaggag ggcatcgcga aggcgcgagc
     3301 ccaacaaccc gatctcgtcc tgatggatat ctccataccc gtaatcgacg ggtgggaggc
     3361 cacgcaggtg ctgaagcacg accccgcgac gaagcacatc ccgattatcg cgctcacggc
     3421 tcatgccctg gcgtccgacc gcgaaaaggc gatggaggtc ggatgcgacg gctatctggc
     3481 caagccatgc gagccccgcg ccgttgtagc cgaagttcag cgattccttg gtcggcctga
     3541 tgccggatga acagaccaaa cgcatcctcg tcgtagacga ccacccggat aacattcagt
     3601 tgttgcgcgc gcggttggaa gcgcgtgggt acatagtcga agaagcggcc gacggcgagg
     3661 ccgcgctggc acgggtctac acatcgccgc cgccagatct gatcctgctc gacgtcatga
     3721 tgcccaagat agacggactc gaagtcgcgc gccgcataaa aagcgacgac tcgctgccgt
     3781 tcatcccggt gataatgcaa accgctctcg actccacgga gagcatggtg cagggcttcg
     3841 aggcaggtgc cgatgactac atcgccaagc ccgtcaactt tcgcgagctg gacgcacggg
     3901 tacgatcgct gcttcgcatc cagacgctcc aatcggcgct cgagcagcgg gagcgcgaat
     3961 tgtccgccgc gaacgcgcag ctgctcgtgc tgtccagcac cgacgtgctc acaggtgtcg
     4021 cgaatcgccg cgctctggaa gagcggctgc acgacatgtg ggagcattca cagcgtctgc
     4081 acgaaccgct ctctgtcgtg atgtgcgaca tcgatcactt caagcgggtg aacgacgagt
     4141 atggtcacca ggtcggcgac gtcgtgctgc agcagttcgc gcacctgctc gtgacggagg
     4201 cgcgcgagat agacagggtc ggccgatacg gcggtgagga atttgtactg ctgctccctg
     4261 gcacggtgct cgacgcggca gtaacattcg cggaacgcat tcgggcatgc gtggagaagc
     4321 gcgagttcac ctacgacgat gggcagacgt tgcaccgcac gatgagctgt ggcattgctg
     4381 catggccaca tcctctcgtc gccgatcagg aggcgctcat caaggccgct gacgacgcac
     4441 tgtacgtcgc gaaggaaact ggcaggaacc gcgtggtgcg attcgacagc cgcgaattca
     4501 atgagcatat cgcgaaaaac ggaaagacag acgaaacaat ctagcggtgg cgcggattct
     4561 ccatccgccc gcgccgcgac gctgcgcgag atcctcaacc gggcgtcgca cgagtactac
     4621 gtgctcgaca agcccacgct cagcgacgcc gagtacgacc ggctgtttcg tgaattgcag
     4681 cagatcgaaa ccgcgtaccc cgatctccgt agcgcggact cgccaacacg gcgtgttggc
     4741 gccgaggtgc agagcgcgct cgtcaagcac acccacgccg ttccgatgtt gtcgctgggc
     4801 aatgcgttca acgacgacga gctgcgtgcg tgggaagatc gtctcattcg catagcgggc
     4861 gatgacattg cacgggtcgg ctattccgcg gagctcaaga tcgacggagc cgcggtgagc
     4921 ctgacgtacg aggatggaat cctcgtcgtc ggcgcaaccc gcggcaatgg caccatcggc
     4981 gaggatgtaa ccgcgaacat ccggacggtg cgcgacgtgc cgctccggct gactcacgcg
     5041 ccgcgcggac gcatcgagat tcgcggcgag atctactttc cattcgatca gttcgagctc
     5101 atgaacgagg cgcgcgtcgc cgcgggcgag cccgtattcg caaatccgcg caacgcgtcg
     5161 gcgggcagtc tccgtcagct cgatccatcg atcaccgcgt cgcgcccgct tcgattcttc
     5221 ggttacgctg tagcattcga cgatccggcg aagctgccgt tcaagacgca atccgagctg
     5281 ctcagtgcgc tgcggtcctg gggaattcca gttgcgccgc atgcactgcg ctgcgctacg
     5341 atggacgatg taaccgcgtg ggctcatcgc gtcgagcacg agctgcgcgc ggagctcaac
     5401 ttcgcgatcg atggcggcgt ggtgaaggtc gattcactgc gactccagga cgacctcggt
     5461 gttgtcggcg gtcgtgagcc gcgctgggcg atcgctcgca agtttgcgcc ggacatcgcg
     5521 gagacgcgtc tcaccgcgat cgaagtcaac gtcgggcgta ccgggcagtt gaacccgtat
     5581 gcagttctcg aagcggtgga gatcggcggc actacggtgc gactcgcgac gctgcacaac
     5641 gagcagctca ttcgcgacaa ggatctgcgc gtcggtgacg tcgtccaggt caagcgcgcc
     5701 ggtgatgtga ttccgcaggt gattggtccg gtgcccgagc ggcgctccgg gagcgagcgt
     5761 gagtggcaca tgccttcacg ctgtcccatc tgcaacacac cggtccagcg cgatgcggat
     5821 ctcgccgcga tctactgtcc caacatcgcc tgtccaggcc ggcaactgga ggggatggtg
     5881 tatttcgcat cgcgcggcgc gatggatatt cgcgggctct cgtacgcgcg catcgagcaa
     5941 ttgctgaacg agggcatcgt gcacgacgtg gccgatctct acacgctcac tgcggatgaa
     6001 gtccttgcac tggatggtta tcagaagaaa agtgcgacgg cgctgatagc agcgatccag
     6061 gcgtccagat cgcagccgtt gtcacgactc ctcaccgggc tcggtatccc gcacgtcgga
     6121 gagacggcgg cacgtctgct ggcgcgacac ttcggctcgt tgaaggcgct gtcatccgcg
     6181 agcgcagacc agatcgaggc aattcgcgga ctcggcgacg tcatcgcgca atcggtcgca
     6241 agtttcttcc acg
//
LOCUS       DATIMD010000363         3047 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1010248, whole genome shotgun sequence.
ACCESSION   DATIMD010000363 DATIMD010000000
VERSION     DATIMD010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1010248"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..888)
                     /gene="argB"
                     /locus_tag="VLI40_08130"
     CDS             complement(100..888)
                     /gene="argB"
                     /locus_tag="VLI40_08130"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HSU97183.1"
                     /translation="MTEPTMEPLKRVVKLGGRAQSASSLAPMIASAWNASNAMCVVHG
                     GGDEISALQRKLGGEPKFTGGRRVTTLQDLDIIRMVLSGVVNKRLVSLFNAAGASAVG
                     ISGEDASLIAAKPLGIPEFGYVGMPVSINTSLIETLWLAGLLPVVSPLGANAETPGTA
                     LNVNGDDAAAAIAVALGADELLFVADVEGVLDSSGCVIDQLDVDEARALIASGIAAGG
                     MAAKLEAAYAALAGGVRSVRIADIDALGESGRGTFITLATAGAK"
     gene            complement(885..1859)
                     /gene="argC"
                     /locus_tag="VLI40_08135"
     CDS             complement(885..1859)
                     /gene="argC"
                     /locus_tag="VLI40_08135"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: protein motif:HMM:TIGR01850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HSU97184.1"
                     /translation="MNKITVGVLGASGYAGREICDLVARHPSMELAFASANSRAGETI
                     RVAGRSISLIATEEAQLDSAGLIFSALPHGASASWVQAAAGAGAKVVDLSADLRPGNG
                     SIFHDGTIVPYGLTELTRPLLPGADVVANPGCYPTAILIGLAPLLARSLVVKGATINV
                     SAASGVTGAGFTPRPELMFAQVAEDFRAYAVGNEHRHLNEMRAVISEMGGDNDILFTP
                     HLLPVARGILATITVPVNESLAQPLSLWRDLYRDEPFIEVSDTMPSLRDVVHRNVVRV
                     SVAKAANVRQPTLIIVAAIDNLMKGAAGQAVQNANVMFGLPEIAGLPA"
     gene            2005..>3047
                     /locus_tag="VLI40_08140"
     CDS             2005..>3047
                     /locus_tag="VLI40_08140"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HSU97185.1"
                     /translation="MRTRLSSALIFLATAALPCTPALSTAQRAASAIPTPASVIGFAP
                     GADRKLPEWKQVVAYFHALEKASPRIQVHTLGKTTLGRPFLAAYIADSATIANLAHYR
                     DIQRLLSDPRLTTPGQVTKLQVDGKLVILVTSSIHSTEVGGILTPMVLAQKLVGDEDD
                     NTRSIRRNTIVILVPSLNPDGVDIVHDWYASSMGTPWEGSGPPVLYHHYTGHDDNRDW
                     YAFTQVETQMVIDSLYSPWHPAIVNDIHQQGSSGTRLFIPPYMDPIEPNIDPILMAGV
                     AQMGKAMTWRLTSDGFVGIANNTSYDAWTPARAYQHYHGAIRILTETASASLASPIHV
                     SFDSLRPGYNVDP"
BASE COUNT          591 a          982 c          924 g          550 t
ORIGIN      
        1 gccgcttgta cgtacccagt atggctggct gaacaggcac cgggatcggc accgaaggtt
       61 gttccgtgga tagctgcatc ataggcaaag tcattgtcgt cactttgcgc ctgccgttgc
      121 gagtgttatg aatgtgccac gtccggattc tccgagcgcg tctatatcgg caatacgaac
      181 agaccgaact ccacctgcaa gcgcggcgta cgccgcttcc agcttggcgg ccattccgcc
      241 ggcagcgatt cccgatgcga taagagcacg cgcttcatcg acgtcgagct gatcgatcac
      301 gcatcccgac gaatcgagca cgccttcgac gtcggcaaca aacagcaact cgtccgcgcc
      361 gagcgcaacg gcgatggcag cggcggcatc atcaccgttg acgttgagcg cggtgcccgg
      421 tgtttcagca ttcgcaccga gtggcgatac gaccggcaga agaccggcga gccagagcgt
      481 ctcgatcagc gacgtgttga tgctgaccgg catgccgacg tagccgaatt ccggaatgcc
      541 gagcggcttc gctgcgatca gagacgcatc ctcgcccgat ataccgacgg cggaggcgcc
      601 agccgcattg aagagtgaaa ccagtctctt gttgacgaca cccgacagca ccatccggat
      661 gatgtcgaga tcctggagcg ttgtaactcg gcggccgccc gtgaattttg gctccccgcc
      721 aagcttgcgc tgcagcgccg aaatctcgtc gccgccgccg tgcacgacgc acatcgcgtt
      781 gctcgcgttc catgcggaag cgatcatcgg cgcgagcgag ctcgcggatt gcgcgcggcc
      841 gccgagtttg acgacgcgct tcaatggctc catcgtgggc tcggtcacgc cggcaatccc
      901 gcgatctcgg gaagtccaaa catgacgttc gcgttctgga ctgcctgccc cgccgcgcct
      961 ttcatgagat tgtcgattgc cgcgacgata atcagcgttg gctgacgcac gttcgcggcc
     1021 ttcgcgacgc ttacgcgtac gacgttgcgg tgcaccacgt cgcgaagtga cggcatcgtg
     1081 tcgctcactt cgatgaacgg ctcgtcgcga tacagatcgc gccagagcga cagcggttgc
     1141 gcgagcgact cgttcactgg gactgtgatc gtggccagta tgccgcgggc gaccggtagc
     1201 agatgcggcg tgaagagaat gtcgttgtcg ccacccatct cactgatcac ggcacgcatc
     1261 tcgttcaggt gccggtgctc gttgcccacg gcgtacgcgc ggaagtcttc cgcgacctgt
     1321 gcgaacatca gctcgggcct gggtgtgaag ccagcgccag tgacgccgct ggccgcgctc
     1381 acattgatgg tcgcgccctt caccacgagc gaacgggcga gcagcggcgc cagcccgatg
     1441 aggatcgcgg tcggatagca tcccggattc gcgacgacat ccgctccggg cagcagcggc
     1501 cgtgtaagct ctgtcagacc atatggaacg atcgttccat catggaaaat cgatccgttt
     1561 cccgggcgca gatcggccga cagatccacc accttcgctc cggcgccggc tgctgcctga
     1621 acccagctcg cggatgcgcc gtgcggcagc gctgagaaga tgagaccggc gctgtcgagt
     1681 tgcgcctctt cggtggcgat gagcgagatg gaacggccag caacgcggat ggtctcgcca
     1741 gcccgtgaat tggcagaggc gaaggccagt tccatggaag gatggcgtgc aacgagatca
     1801 caaatctcgc ggcccgcgta tcccgacgcg ccgagcacac cgaccgtaat tttattcact
     1861 cggaatgtat aaacagtcac aggggcagtc gcaatacctg cagggtcctg aagcgagatc
     1921 acccgggtgt cgtgatggat ttcgctaacg aagatctgac gctcagcgta cagaagatga
     1981 cccctcaatc aggagccgcg tttagtgcgc actcgtcttt cctcagcgct gatcttcctt
     2041 gcgactgccg ctctgccctg cacgcccgcg ctctcgaccg cgcaacgtgc cgcttcggcg
     2101 ataccgacgc cggcttcggt gatcggcttc gcgccaggtg ccgaccggaa gcttccggaa
     2161 tggaagcagg tcgtcgctta cttccatgcg ctcgaaaagg cgtcgccacg aattcaggtg
     2221 cacacgctcg gcaagacgac gctcgggcgg ccgttcctcg ccgcatacat agccgactcg
     2281 gcgacgatcg cgaatctcgc gcactaccgc gacatccagc gactgctgtc ggatccgcgg
     2341 ctcaccacgc cgggacaggt cacgaagctc caggttgatg gcaagctcgt aatcctggtc
     2401 acgtcgagca tccactctac ggaagtcggc ggcatactca cgccgatggt actggcgcag
     2461 aagctggtgg gcgacgagga cgacaacacg cgctccattc ggcgcaacac catcgtgatc
     2521 ctggtcccgt cgctcaatcc ggacggcgtg gacatcgtgc acgactggta cgcaagctcc
     2581 atgggtacgc cgtgggaagg cagcggaccg cccgtactgt atcaccacta cacaggtcac
     2641 gacgacaacc gcgactggta cgcgttcacg caggtcgaga cgcagatggt gatcgactcg
     2701 ctgtacagcc cttggcatcc ggcgatcgtg aacgacatcc atcaacaggg ttccagcggt
     2761 acgcgactgt tcattccgcc atacatggat ccgatcgagc cgaacatcga tccgatactc
     2821 atggccggtg tcgcgcagat gggcaaggcg atgacgtggc ggctgacgtc cgatggattc
     2881 gtcggcatcg cgaacaacac gtcgtacgac gcgtggactc cggcgcgcgc atatcagcac
     2941 tatcacggcg cgatccgcat cctcaccgag accgcgagtg cgtcgctcgc gtcgccgatc
     3001 cacgtgtcgt tcgattccct tcggcccggc tacaacgtcg acccgaa
//
LOCUS       DATIMD010000364         2832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3032949, whole genome shotgun sequence.
ACCESSION   DATIMD010000364 DATIMD010000000
VERSION     DATIMD010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3032949"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..487
                     /locus_tag="VLI40_08145"
     CDS             <1..487
                     /locus_tag="VLI40_08145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-aminobenzoate-CoA ligase"
                     /protein_id="HSU97186.1"
                     /translation="TPLPPGNVGLLEVRGPTGCRYLDDVDRQRAYVRDGWNLTGDSYR
                     MDEDGYFWYQARSDDMIVSSGYNIAAPEVENALLTHPDVQECAVIGVPDDERGSIVKA
                     FVVLRPHARDNPPAVKTLQDHVKSEIAPYKYPRAIQFVDTLPRTDTGKLQRFRLRETV
                     K"
     gene            484..888
                     /locus_tag="VLI40_08150"
     CDS             484..888
                     /locus_tag="VLI40_08150"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012429996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HSU97187.1"
                     /translation="MSDLDVINPEGWLAPRGYSNGISARGRIISIAGQIGWDPATCVI
                     ESPDFAQQTVQALRNIVAILARADARPEHLVRMTWYVTDRQAYVDARVAIGDAYREII
                     GRHFPAMSVVIVSGLVEVDALVEIEATAVVPE"
     gene            885..2099
                     /locus_tag="VLI40_08155"
     CDS             885..2099
                     /locus_tag="VLI40_08155"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HSU97188.1"
                     /translation="MSTLRDGRNAVIIDAVRTPIGRHRGALATVRSDDLAAVAIRALV
                     ERTNLDCSTVDDVILGCTNQAGEDSRNIGRLAALIAGLPVEVPGQTVNRLCGSGLQAI
                     VSATHAIRSDEGDCFIAGGVESMTRAPWVTLRPDEPFARSVPETADSTIGWRFTNPVL
                     PPEWTISMGQTAEVVAERYRISREDQDAFALESQRRAADAIAHGRFDAELVPVTAPRR
                     GGQPIRIERDEHPRPEVSMDSLRKLRPAFRNDGTVTAGSSSGINDGAAALLVMSERAA
                     AEGRYTPMARIVSTAVAGVAPDVMGIGPVPAVRLALRRAGLTIEDIDLIELNEAFASQ
                     ALACMRELNIPADRVNVNGGAIALGHPLGASGARIVTTLVHEMRRRNARRGLATMCIG
                     VGQGIAIILERT"
     gene            2096..>2832
                     /locus_tag="VLI40_08160"
     CDS             2096..>2832
                     /locus_tag="VLI40_08160"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HSU97189.1"
                     /translation="MTNVAIIGAGTMGHGIGYVTIIAGYMVTLTDVDEDVLERARAHI
                     GLALDSGVMRGKVSEETRRDAMGRITLSTDLERAIEDAAVVIEAAPEKLALKQDIFRR
                     ICTAAPPDALLATNTSSLSVTDIASTTSCPERVVGMHFFNPVAAMKLVEVIRGTKTND
                     ESADRARAFAESLGKRAIVVRDSPGFATSRLGIVLGLEAMRMLEQGVASAEDIDTAME
                     LGYNHPVGPLKLTDIVGLDVRLAVADHL"
BASE COUNT          539 a          889 c          921 g          483 t
ORIGIN      
        1 cacaccgctc ccgccgggca acgtcggact cctcgaagtt cgcggcccca cgggctgccg
       61 gtatctcgac gacgtcgacc ggcagcgagc atacgtccgc gatggctgga accttaccgg
      121 cgattcatat cgcatggacg aggacggcta cttctggtat caggcgcgga gcgacgacat
      181 gatcgtttcg tctggttaca acattgcggc accggaagtg gagaacgcgc tgctcacgca
      241 tccggatgtc caggaatgcg cagtgatcgg cgtcccggat gacgagcgcg ggagcatcgt
      301 caaggcgttc gtcgtactgc gcccgcatgc gcgcgacaat ccaccggccg tgaagacgct
      361 tcaggaccat gtgaagagtg agattgcacc gtacaagtac ccgcgtgcca tacagttcgt
      421 cgatacgctg ccccgcaccg ataccggcaa gctgcaacgt tttcgcttga gggagacggt
      481 caagtgagcg acctcgacgt gattaacccc gagggttggc tcgcgccgcg gggctactcg
      541 aacggcatca gcgcgcgcgg gcgcatcatc tcgattgcgg gtcagatcgg ctgggatcca
      601 gccacgtgtg tcatcgagag tcccgatttt gcgcagcaga cggtgcaggc gctccgcaac
      661 atcgtcgcca ttctggcacg cgccgatgcg cggcccgagc atctggttcg catgacgtgg
      721 tacgtcacgg atcggcaagc gtatgtcgat gcacgggtcg cgatcggtga tgcgtatcgc
      781 gagataatcg gacgacactt ccccgccatg tcggtggtga ttgtgagcgg cctcgtcgaa
      841 gtggacgcac tcgtcgaaat agaagccacc gccgtagtgc cggaatgagc acgctacgcg
      901 acgggcgcaa cgcggtgatc atcgatgcgg tccgtacacc cataggacgg catcgcggcg
      961 cgctcgcgac ggttcgctcc gacgatctcg ccgctgtcgc gattcgcgca ctggtcgagc
     1021 gcaccaacct cgattgctcc actgtcgacg acgtgattct cggatgcacc aaccaggccg
     1081 gcgaggacag tcgcaacatc ggccgtctcg ccgcgctcat cgcgggtctt ccggtggagg
     1141 taccgggcca gactgtgaat cggctgtgcg gctccgggct ccaggcgatc gtcagtgcga
     1201 cgcacgccat tcggtcggat gaaggcgatt gcttcatcgc cggcggtgtc gagagcatga
     1261 cgcgcgcgcc gtgggtcaca cttcggcctg acgagccatt cgcccgctct gttcccgaga
     1321 ccgccgacag caccatcggg tggcgcttca ccaacccggt ccttccgccg gagtggacga
     1381 tctcgatggg ccagacggcc gaagtcgtcg ccgagcggta tcgcatctcg cgggaagatc
     1441 aggacgcatt cgctctggaa agtcaacgcc gtgccgcgga tgcaatcgcg cacgggcgtt
     1501 tcgacgccga gctggttccg gtaactgcac cgcggcgcgg aggccagccg attcgcatcg
     1561 agcgcgacga acatccgcgg ccggaagtca gcatggattc gctgcgaaag ctccggccgg
     1621 cgttccgcaa tgatggcaca gtcacagctg gatcctcgag tggcataaac gatggcgccg
     1681 ccgcgctgct cgtcatgagc gaacgcgcgg cagcggaagg tcgttacaca ccgatggcac
     1741 gcatcgtttc gaccgccgtg gccggcgtgg ctccggacgt gatggggatc ggacccgtcc
     1801 cagcggtacg actcgcgctc aggcgcgcgg gtctgacgat cgaggacatc gatctcatcg
     1861 agctgaacga agcatttgcg tcgcaggcgc tcgcgtgcat gcgagagctg aacattcccg
     1921 ccgatcgcgt caacgtcaac ggcggcgcaa tcgcgctcgg ccaccccctt ggcgcgagcg
     1981 gcgcccggat cgtcacgacg ctcgtgcacg aaatgagacg acgcaacgcg cgccgcgggc
     2041 tcgcgaccat gtgcatcgga gtcggtcagg gaattgcaat cattctggag cgtacatgac
     2101 caacgtcgcg ataatcggcg cgggaacgat ggggcacgga atcggatatg ttaccatcat
     2161 agccggttac atggtaacac ttacggatgt ggacgaggac gtgctcgaac gggcgcgtgc
     2221 gcacatcggg ctggcactcg actcgggcgt gatgcgtggc aaggttagcg aggagacgcg
     2281 tcgcgacgcg atgggccgca tcaccctttc aaccgacctg gagcgcgcaa tcgaggatgc
     2341 ggcagtcgtc atcgaagcgg cgcctgaaaa gctggccctc aagcaggaca tcttccggcg
     2401 gatctgcacc gcggcgccgc cggacgcatt gctggcgaca aatacgtcat ccctttcggt
     2461 aaccgacatt gcgtccacca ccagttgccc ggagcgcgtc gtcggaatgc acttcttcaa
     2521 cccagtcgcg gcaatgaaac tggtggaagt cattcgcggc acgaaaacga atgacgaatc
     2581 cgcagaccgt gcgcgcgcat tcgccgagtc tctgggcaag agggcgatcg tggtccgcga
     2641 ctcacctggc ttcgccacga gcaggctcgg aattgtcctg gggctggagg caatgcgaat
     2701 gctggaacag ggggtggcca gcgccgagga catcgatacc gcgatggagc tgggctacaa
     2761 ccaccccgtc ggcccgctca agctcaccga catcgttggc ctcgacgtga ggctcgctgt
     2821 tgcagatcat ct
//
LOCUS       DATIMD010000365         4316 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4185905, whole genome shotgun sequence.
ACCESSION   DATIMD010000365 DATIMD010000000
VERSION     DATIMD010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4316
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4185905"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(161..1423)
                     /locus_tag="VLI40_08165"
     CDS             complement(161..1423)
                     /locus_tag="VLI40_08165"
                     /inference="COORDINATES: protein motif:HMM:NF019403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparan-alpha-glucosaminide N-acetyltransferase
                     domain-containing protein"
                     /protein_id="HSU97190.1"
                     /translation="MILTVDRTVRATLDDDRSRAIGMPDVTATARPARVRIQSVDVVR
                     GLIMIVMALDHTREYFTSPVISPTDLTHASAALFLTRWITYFCAPVFFLLTGTGAFLS
                     LRRKSKRELSRFLWTRGLWLIFLEVVVTRCLGWQFNFDYRLTILFVLWALGWSMIALS
                     ALVHLPTKAVVLFGVALIAGHNLLDSVSAASFGALAPVWLILHSPGVLLSTPRFTIFE
                     AYPLIPWIGVTAVGYGLGQLYRWESVRRRNFLLRLGAILTAAFVVLRYVNIYGDPQRW
                     SVQHSSGFTVLSFLNTTKYPPSLLFLLMTLGPAMLLLWAVDGRTPQWLRPALTVGKVP
                     MFYYVLHIPLIHVLATAVCYARYGQAHWMFESPSLDRFPITPPPGWDYSLPVVYLVWA
                     VVVVALYPVCRWYAALKQRRTDWWLSYL"
     gene            1504..3153
                     /gene="pgm"
                     /locus_tag="VLI40_08170"
     CDS             1504..3153
                     /gene="pgm"
                     /locus_tag="VLI40_08170"
                     /EC_number="5.4.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004614 - phosphoglucomutase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucomutase
                     (alpha-D-glucose-1,6-bisphosphate-dependent)"
                     /protein_id="HSU97191.1"
                     /translation="MSISPLAGKPAPQSILVNVPRLMTAYYSRVPDPKVAAQRVSFGT
                     SGHRGSAFDCAFNEDHIVAITQAICEYRKQHGIDGPLFLGIDTHALSASAFASALEVL
                     AANSVSVMIDDRDGYTPTPVVSHAIITYNRGRTNGLADGIVVTPSHNPPDDGGFKYNP
                     TNGGPADTDITGWIQNRANQLLGESLKGVVRIPFDRATRAATTHKHDYMDAYIGDLGA
                     VIDFDAIRSAKLHLGVDPLGGAGVFYWGMIAERYRIDLTVVSEDVDPTFRFMTVDWDG
                     RIRMDCSSPYAMQRLIGLKDRYDVAWACDTDHDRHGIVAKSVGLLNPNNYLAVAISYL
                     FDHRPDWSPTAGVGKTVVSSSMIDRVTSRLGRPLKETPVGFKWFVDGLMNGTIGFAGE
                     ESAGASFLRRDGTIWTTDKDGIIAGLLAAEMTAVTGKDPGQLYQNLTHEFGDPVYERI
                     DSPATPEQKKILSKLAPSDVNVTELAGEKITSVITTAPGSKDPIGGIKVSTASSWFAI
                     RPSGTEDVYKLYAESFKGTEHLRVVQAEAKTIIQTALKTGT"
     gene            complement(3189..3959)
                     /locus_tag="VLI40_08175"
     CDS             complement(3189..3959)
                     /locus_tag="VLI40_08175"
                     /inference="COORDINATES: protein motif:HMM:NF014089.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIM24 family protein"
                     /protein_id="HSU97192.1"
                     /translation="MAIPQLHPTTVRNESFGGVTYHLEGELVPVLHVEIGSMPVYFEH
                     HVLLWKHPTVSVGVKSLGGAFKRLISGMPIFMTEAKGMGHIAFSRDGAGQIIPLHLSR
                     GQVIDVREHQFLAATDSIDFTFQRVNGIGNILFGQSGLFIDTFGARNGDGIVWLHGYG
                     NVFEVTLQPGEQIDVEPGGWIYKDPSVRMELETQSIATGFFASGGQIFFNRFTGPGRV
                     GIQSMYYHPPVATNESNTQAAVGGGILGAVMRGVMDNR"
BASE COUNT          950 a         1282 c         1275 g          809 t
ORIGIN      
        1 gcgcattgac gacgtttgcg acgcgccgcg ttggtggaat gcgtttccga cgacgctatt
       61 ggacgcgtcc gattggtggt cctgcgtagg gcgcggattt atccgcgcct ggccccgtta
      121 cgcgtaatcg aaatcggata tccaccccat tccacgtctc ctacaaataa ctcagccacc
      181 aatccgtacg ccgctgtttg agcgcggcgt accagcggca caccggatac aacgccacca
      241 cgacaaccgc ccagacgaga tagacaactg gaagactgta atcccatccg ggcggtggcg
      301 tgatcggaaa tcgatccagt gacggtgact cgaacatcca gtgtgcctga ccgtagcgtg
      361 cgtaacacac tgctgtcgcg agcacatgta tcaacgggat gtgcagcacg tagtagaaca
      421 tcggaacctt gccgaccgta agtgcaggtc gcagccactg cggtgtgcgg ccgtccaccg
      481 cccagaggag cagcattgcg ggcccgagcg tcatgagcag gaatagcagt gacggcggat
      541 acttggtcgt gttgagaaac gacaacacgg tgaatccaga cgagtgctgg accgaccagc
      601 gttgtggatc gccatagatg ttcacgtagc gcaggaccac gaatgcagcc gtgagaatgg
      661 cgccaagcct gagcaggaaa ttcctgcggc ggaccgactc ccacctgtac agctgtccca
      721 gtccgtagcc aacggccgtg actccgatcc acggaatgag cggatacgct tcgaagatcg
      781 tgaacctcgg cgtcgagaga agcacgccgg gcgagtgcag aatcagccag accggcgcca
      841 atgctccgaa cgatgcggca cttacggaat cgaggagatt gtgccctgcg atgagcgcca
      901 cgccgaacag cacgactgcc tttgtcggaa ggtgtaccaa cgccgacagc gcgatcatcg
      961 accagcccag tgcccacagc acgaatagta tcgtgagccg gtaatcgaag ttgaactgcc
     1021 aaccgaggca gcgagtgacg acgacttcca ggaagatgag ccagaggccg cgcgtccaca
     1081 ggaaacgtga cagctcccgc ttcgattttc gccgcaatga caggaacgcg cccgtgccgg
     1141 tgagcagaaa gaagaccggc gcacagaagt aggtgatcca gcgcgtcagg aacaacgccg
     1201 ctgacgcgtg agtcagatcg gtgggactga tcaccggcga ggtgaagtac tcgcgcgtgt
     1261 gatccagagc catgacgatc attatgaggc cgcgcacgac gtccaccgac tggatgcgca
     1321 cccgtgcggg ccgcgccgtc gccgtcacgt cgggcatgcc aattgcgcgt gatcgatcgt
     1381 cgtcgagtgt cgcgcgtacg gtccggtcaa cggttagtat caagagttct ccccttttca
     1441 acatgggttc ccgtttccgc gggaatgacg acggcctgtg ttccgcctca tccgtgaacg
     1501 ataatgagca tcagcccact ggccggcaag ccggcaccgc agtccatact cgtcaacgtg
     1561 ccgcggctca tgactgcgta ctactcgcga gtccccgatc cgaaagtcgc ggcgcagcgc
     1621 gtgtcgttcg gtacgtcggg acatcgcggg tccgccttcg attgcgcctt caacgaagat
     1681 cacattgtcg cgatcaccca ggcgatctgc gaatacagaa agcaacacgg aatcgacggt
     1741 ccgttgttcc tcggcatcga cacgcacgcg ctgtccgcat ctgcgttcgc atctgcgctc
     1801 gaagtcctcg ccgcgaatag tgtgagcgtg atgatcgacg accgtgacgg atacactccg
     1861 actccggtag tctcgcacgc aatcatcacc tacaatcgag gccgcacgaa cgggttggct
     1921 gatggcatcg tagtgactcc atcgcacaat ccaccggacg atggtggttt caagtacaat
     1981 cccaccaacg gcgggccggc ggacaccgac atcacaggct ggatccagaa tcgcgccaat
     2041 cagttgctcg gcgaaagtct caagggcgtc gtacgcattc cgttcgaccg cgccactcgc
     2101 gccgcgacga cccacaagca cgattacatg gacgcgtaca tcggcgacct cggcgcagtc
     2161 atcgacttcg acgcgatccg atccgccaag ctccacctcg gcgtcgatcc actcggtggc
     2221 gccggcgtgt tttactgggg aatgatcgcc gagcggtaca ggatcgacct gacagtcgtg
     2281 agcgaggacg tcgatccgac gttccggttc atgaccgtgg attgggacgg caggatccgc
     2341 atggattgct cgtcgccata tgcgatgcag aggttgatcg gactcaagga caggtacgac
     2401 gtcgcgtggg cgtgcgacac cgatcatgat cggcatggta ttgtcgcgaa gagcgtcggg
     2461 ctgctcaatc cgaacaacta tctcgcggtt gcgatatcgt acctcttcga tcatcgcccc
     2521 gactggtcgc ccactgcagg ggttggcaag actgtggtga gcagcagcat gatcgatcgt
     2581 gtcacgtcgc gacttggccg gccactcaag gaaacaccgg tcggcttcaa atggttcgtc
     2641 gatggactga tgaacggaac gatcggattt gcaggtgagg aaagtgcagg cgcgtcgttc
     2701 ctgcggcgtg atggaacgat ctggactacc gacaaggatg gaatcatcgc cggattgctt
     2761 gccgcagaga tgaccgccgt cacggggaag gatcccggcc agctgtatca gaacctcact
     2821 catgaattcg gcgatccagt gtacgagcgc atcgattcac cggcgacacc tgaacagaag
     2881 aaaatacttt cgaagctcgc gccgagcgac gtgaatgtta ccgagctggc gggcgagaag
     2941 attaccagcg tcatcactac agcaccggga agcaaggatc cgatcggtgg catcaaagtt
     3001 agtacggcca gcagctggtt cgctatccgt ccatcgggta ccgaagatgt ctacaaattg
     3061 tatgcggaaa gtttcaaggg taccgagcat ctccgggtcg ttcaggccga ggcgaagacc
     3121 ataattcaga cggcgttgaa aactggcacg tagggcgcgg acgcatccgc gccctacatt
     3181 cgcttatctc agcgattgtc catcaccccg cgcatcacag cgccgagtat tccgccacca
     3241 accgccgcct gcgtattgct ctcgttcgtc gcgaccggag gatggtagta catcgactgg
     3301 ataccaacgc gtcccggtcc tgtaaatcga ttgaagaaga tctgaccgcc gctcgcgaag
     3361 aatcctgttg cgatgctttg cgtttcgagc tccatgcgta ccgacggatc cttgtatatc
     3421 catccgccgg gctcgacgtc gatctgctcg cccggttgca gcgttacctc gaacacgttg
     3481 ccgtagccgt gcagccagac gataccatcg ccgttccgcg cgccgaatgt gtcgatgaac
     3541 agtcccgact gtccgaacag aatgttgccg attccattca cgcgctggaa cgtgaagtcg
     3601 atcgaatcgg tagcggcgag gaactgatgc tcgcgcacgt cgatcacctg tccgcgcgag
     3661 agatgcagcg ggattatctg tcctgcaccg tcgcggctga acgcgatgtg acccattccc
     3721 ttggcctcgg tcatgaagat cggcatgccc gagatgagcc gcttgaatgc accaccgagc
     3781 gacttcacgc caacagatac cgtcgggtgc ttccagagca gaacgtgatg ctcgaagtac
     3841 accggcatcg atcctatttc gacatggagt accggaacga gctcgccttc gagatggtac
     3901 gtgactccgc cgaacgactc attgcggacc gtcgtcggat gcagctgagg gatggccacg
     3961 ggaagagggg ttgatggtta cggaaaaggt cgtgctgaat agagccgcgc gcaacaccga
     4021 tccttcggcg cggtgatgac gtcgtgcaat gacatcgtgc aatgacatca tgcatggtat
     4081 cgaacggaat tcgattgcat cttgagtgac aggcatggat gcatccatgc cccaccattg
     4141 ccaccatcga tgtctcctgc gacgcgacgg tgtggaatcg ggccatcatc catggatccc
     4201 cgccttcggc ggggatgacg acattcaacg aaccggcgtt aatccgattc cgattgcgcc
     4261 taacggggcc aggtgcggat aaatccggcg acatccatgt tcgattgcat ccatgg
//
LOCUS       DATIMD010000366         4038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2453135, whole genome shotgun sequence.
ACCESSION   DATIMD010000366 DATIMD010000000
VERSION     DATIMD010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4038
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2453135"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..616)
                     /gene="kdsA"
                     /locus_tag="VLI40_08180"
     CDS             complement(<1..616)
                     /gene="kdsA"
                     /locus_tag="VLI40_08180"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HSU97193.1"
                     /translation="MSSLFPRDRFFLIAGPCVLQDDALNLEVAEALLRIEERVPGGVI
                     YKASFDKANRSNPGAARGPGLEEGIAALGRVRASTGLPVLTDVHLPEQCAAVARQVDV
                     LQIPAFLCRQTDLLHAAGATGRPVNVKKGQWMHPEGMRGALDKVREAGGDEVAVTERG
                     TFFGYGDLVVDMRAFPRLKTACEAPVIFDATHSVQRPGQGVGGSS"
     gene            complement(613..2286)
                     /locus_tag="VLI40_08185"
     CDS             complement(613..2286)
                     /locus_tag="VLI40_08185"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HSU97194.1"
                     /translation="MRTESSQQTRYIFVTGGVVSSLGKGIAAASIGRLLVERGMRVTI
                     MKFDPYLNVDPGTMSPFQHGEVFVTDDGAETDLDLGHYERFIDRSLSQMNNVTTGRIY
                     LNVITKERRGEYLGSTVQVIPHITDEIKSAMKRLAPDNDVVIVEIGGTVGDIESQPFL
                     EAVRQFRQEIGRENGIFIHLTLVPFIAAAGEVKTKPTQHSVRELMQLGIQPDILICRT
                     ERALSEDVKRKIALFCNVEFGAVVESRDVPTIYQIPLVFHEQGADERVMHRLGLLGKR
                     APDLTQWRRLVQRIISPSRRVKIAVVGKYTEFIDSYKSVQEALIHGGIANNVGVDMSW
                     ISSDTFSSRERTREILAEYDGLLVPGGFGVRGVEGMVEAIRYAREAGLPFFGICLGMQ
                     VAIVEFARNVMGLDDSNSSEFAPDCGNAVISLMESQQHVTDMGGTMRLGQYPCRLGDG
                     TRAAAMYGTQQVSERHRHRYEVSNAFRDGFIEHGLTLSGLSPDGSLVEIVELQTHPWY
                     LGCQFHPELKSRPTRPHPLFAGFVAAAAEHADAGLSQNSESRVGTQALS"
     gene            complement(2292..3053)
                     /gene="kdsB"
                     /locus_tag="VLI40_08190"
     CDS             complement(2292..3053)
                     /gene="kdsB"
                     /locus_tag="VLI40_08190"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: protein motif:HMM:NF003952.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HSU97195.1"
                     /translation="MKTAVVIPARLGATRLPRKPLRDLAGEPLVVRVWRRVERMGVAD
                     RVVVATDHDDVAAIARAAGADVVMTSSDCASGTARVAEVSRNPEFSSYDAFVNVQGDE
                     PFISAGFISAAADVVRSGRFTLGTVAAVAPDEIFDRPSIVKVVIGTDGHALYFSRAPI
                     PFLREETDAALRHPLTLQHIGVYSYTRDALAQWMSLPPHPLEDIERLEQLRPLAHGMN
                     IGVAVINERAECGIDTEEDLRAANERWSSFAAGEQ"
     gene            complement(3160..3807)
                     /locus_tag="VLI40_08195"
     CDS             complement(3160..3807)
                     /locus_tag="VLI40_08195"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HSU97196.1"
                     /translation="MRFRYTAIPDACLLFTIIVSPAVVRAQDVTITHNGTAVQPCCAW
                     GPVAVGWTYTPTTTFFLTGIDTRFGTPQTFSYGARTVTAEIRDGMNGAVLGSTSFTTS
                     SDNAEWVGGVFSPVELNSGSSYFIDFLNVGLNADGGGLAPNALSQSGTEGFGSFAVAI
                     HPSDPFVLLPDQPSDPIIRLTGNMSDVTTTPEPSSLALLGSGLIGLGGMIRRRKV"
BASE COUNT          794 a         1251 c         1208 g          785 t
ORIGIN      
        1 cgctggaacc gccgacgccc tgacctggac gttgcacact gtgcgtcgcg tcaaagatca
       61 ccggcgcttc gcacgctgtc ttgaggcgcg gaaaggcacg catgtcgacg accagatcgc
      121 cataaccgaa gaacgttccg cgctccgtaa ccgcaacctc gtcaccgccc gcctcgcgaa
      181 ccttgtccag tgcgccgcgc attccttccg gatgcatcca ctggcccttc ttcacgttga
      241 ccggacgacc cgtcgctccc gcagcgtgca gcagatcggt ctggcggcag agaaaggcgg
      301 gaatctgaag tacatcgacc tgacgcgcga ccgctgcaca ctgctccgga aggtgcacat
      361 ccgtaagcac aggaagaccc gtggaggcgc gcacacgacc gagtgccgcg attccctctt
      421 cgagccccgg tccccgcgcg gcgccggggt tggagcggtt cgccttgtcg aagctggcct
      481 tgtagatgac accgcccgga acgcgctcct cgattcggag aagcgcctct gcgacctcga
      541 ggttcagcgc atcgtcctgg agtacgcacg gtcccgctat gaggaagaac ctgtcgcgcg
      601 gaaaaagcga gctcacgata gcgcttgggt tccgacgcgt gactcggagt tctgagagag
      661 acccgcgtcc gcatgctccg ccgcggctgc gacgaatccc gcgaacaacg gatgcgggcg
      721 cgtcggacgg gacttgagct ccgggtggaa ctggcaaccc agataccacg gatgcgtctg
      781 cagctcgacg atctcgacga gggagccatc aggtgacagg ccggacagcg tgagcccgtg
      841 ctcgatgaaa ccatcgcgga atgcgttgga gacttcgtag cgatgccggt gccgctcgct
      901 cacctgctgc gtgccgtaca tcgcggccgc gcgtgttcca tcgccgagcc tgcacggata
      961 ctggcccagt cgcatcgtac cacccatgtc agtgacatgc tgctgcgatt ccatgagcga
     1021 gatcaccgcg ttgccgcagt cgggtgcgaa ctcgctcgag ttgctgtcgt ccagccccat
     1081 gacgttgcgt gcgaattcga caatcgcgac ctgcatgccg aggcagatac cgaagaacgg
     1141 caatcccgct tcgcgtgcat atcgaatcgc ttcaaccatt ccttccacgc cgcgcacccc
     1201 gaaaccgcca ggaaccagca gtccgtcgta ctcggcgagt atctcgcgcg tacgctcgcg
     1261 tgacgagaaa gtgtcgctcg atatccacga catgtcgacg ccgacgttgt tcgcgatccc
     1321 gccgtggatc agcgcttcct gcacgctctt gtagctgtcg atgaactccg tgtactttcc
     1381 gacaaccgca atcttcacgc ggcgcgatgg cgagatgatg cgctgcacga gtctgcgcca
     1441 ctgcgtgaga tcgggagcac gcttgccgag cagcccgagc cggtgcatca cgcgctcatc
     1501 ggcgccctgt tcgtgaaaga cgagcggaat ctggtagata gtagggacgt cgcggctctc
     1561 gactaccgcg ccgaattcga cgttgcagaa gagcgcgatc tttcgcttga cgtcttcgga
     1621 aagtgcgcgc tcggtacggc agatcaggat gtcgggttgt attccgagct gcatcagctc
     1681 acgtactgaa tgctgggtcg gttttgtctt tacctcgccg gccgcggcga tgaacggaac
     1741 cagtgtgagg tgaatgaata ttccattctc gcggcctatc tcctgacgaa actggcgtac
     1801 ggcttcgagg aacggctgcg attcgatgtc gccgaccgtg cctccgatct cgactatcac
     1861 gacgtcgttg tcgggagcga gccgcttcat cgcggacttg atctcgtccg tgatgtgcgg
     1921 aatcacctgg accgtggagc cgaggtattc gcctcgccgc tcctttgtga tgacgttgag
     1981 gtagatgcgt cccgtcgtca cgttgttcat ctgcgacagc gaacggtcga tgaaccgctc
     2041 gtagtgtcca agatcgagat ccgtctcggc accgtcgtca gtgacgaaca cctcgccgtg
     2101 ctggaacggt gacatcgttc cgggatcgac gttgaggtat ggatcgaatt tcatgatcgt
     2161 gacacgcatg ccacgctcta ccagcagccg cccgatcgaa gcagcagcaa tacccttccc
     2221 gagcgatgaa acgacaccgc cggtgacgaa gatgtagcgc gtctgctgcg aggactcagt
     2281 tctcattgcc atcattgctc tcctgccgcg aacgagctcc atcgctcatt cgcagcccgt
     2341 aggtcctctt cagtatctat cccgcactcg gcgcgctcgt tgattacggc cacgccgatg
     2401 ttcatcccat gtgctagcgg ccgcagttgc tccagccgct cgatgtcttc gagcggatgc
     2461 ggcggaagcg acatccattg tgcgagcgcg tcccgcgtat acgagtagac gcctatgtgt
     2521 tgcaaggtaa gcgggtgccg tagagccgcg tcggtttcct ctcgcagaaa cgggatcggc
     2581 gcgcgtgaga aatacagcgc atggccgtcg gttccgatga ccacttttac tatcgagggc
     2641 cggtcgaaga tctcgtccgg agcgaccgcg gcgacggttc caagtgtgaa tctcccgctc
     2701 ctgacgacgt cagcagctgc agagatgaag ccggcggaga tgaatggctc gtcgccctgg
     2761 acgttgacga acgcgtcgta ggaggagaat tcggggttcc gggacacttc cgcgactcga
     2821 gcggttcctg acgcgcaatc actgctcgtc atgaccacat ccgcacccgc cgctcgcgca
     2881 atcgcggcca cgtcgtcgtg gtcggtagcg actactacgc ggtcggcgac tcccatccgt
     2941 tcgactcgtc gccacacccg tactacgagc ggctctccag cgaggtcgcg aagcggcttc
     3001 cgggggagcc tggtggcccc gaggcgggcc gggatcacga ccgcggtctt catcgcgggc
     3061 gaaaaaatag ggggctggac gcaactttca cgccaccaaa gttaccactt gctgagtgcc
     3121 ggcgcaaacg gaatctgcgc cggcactcga gcgtcgatcc tacaccttgc ggcggcggat
     3181 catcccgccc aatccgatga ggccgctgcc gaggagcgcc agactgctcg gttcgggcgt
     3241 ggttgtgaca tcagacatgt tgccggtgag gcggataatg gggtcgctag gttggtccgg
     3301 caataaaaca aatggatcag acggatgaat tgcaaccgcg aagctgccga acccctccgt
     3361 cccggattgc gacagcgcgt ttggcgcgag gccgccgccg tctgcgttca ggcctacgtt
     3421 caggaaatcg atgaaatacg agcttccgct gttcagctcc accgggctga agacgcctcc
     3481 gacccattcc gcgttgtcgg atgacgtcgt gaacgaagtg ctcccaagaa ccgcgccgtt
     3541 catgccatcc cggatctcgg cggtgacggt cctggcgccg taggaaaacg tttgcggcgt
     3601 cccgaaacgt gtatcgattc cggttagaaa aaaagttgta gtgggtgtat atgtccaacc
     3661 gacggcaacg gggccccagg cgcagcacgg ctggacagcg gtgccgttgt gcgtgattgt
     3721 gacatcctgc gcgcgcacga ccgcgggact cactatgatg gtgaacaaaa gacatgcatc
     3781 aggaattgcc gtgtaacgaa atcgcatgtg gataattcat ttgaggtgag gaggatgccc
     3841 ggcgatgtgc acttcacagg cagattgtcg gccactccaa cacggaaaaa gattatcgca
     3901 tgctttctat aaaccatgaa acgacagcag cttaccctac gctccaattt tgaaattgcc
     3961 gaccatacac gcagtgctgt cgcgtttgcc cgacaataga aggatcgtcg ccacacattt
     4021 tctcttcgat cacatata
//
LOCUS       DATIMD010000367         3685 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4475722, whole genome shotgun sequence.
ACCESSION   DATIMD010000367 DATIMD010000000
VERSION     DATIMD010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4475722"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            170..2581
                     /locus_tag="VLI40_08200"
     CDS             170..2581
                     /locus_tag="VLI40_08200"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU97197.1"
                     /translation="MSTLLQDMRYALRSFGKARAFTIAAVLTIALGIGANTAIFSVVH
                     SVLFRALPFSAPERLVQVWPNGPSSRAEYAEVRAKTRLYQDIAAVSSLPTGATLSGRG
                     EPERIAIASATSNLFPVLGIAPALGRNFTASEERTGDDNVVMLSHDLWQQRFGSDPAI
                     IGRTIMLDGVSRTVIGVMPSDFHFPRREVEAWVPVVMDASNVGDYWGSGGYAEIGRLR
                     AGATATSAQDELRSVARQIRHDNPVWDPGANYGTDAAVVSLQTQLAGDVRPTLLVLLA
                     AVAVVLLIACANVANLLLARGAARTRAFAIRAAIGARRRRLVQQLLTESLLLAGIGAF
                     LGLMLAWVIVAPLSRGLLADTPQLFNVGIDGGLLAFTVAIAVITGVLTGIVPALRASD
                     PNFNTLLNDASRGASSGFGHRRLSDMLVVLEVALAVTLVIGAGLLIRSFWGLSSTAPG
                     FDPVGVTTARVDLPKQGQDKEEHERVFYSQLIQRVAELPGVRSAAATSEIPLDERSGM
                     AFRVGGQLEDIHHGLPTANGYHVVTPAYLRTMGIPLRNGRSFTDADAKGAPDVAIVNE
                     ALARRFWPNGDAIGQRIGYPWESPWITIVGVAADIHEQGLGIADTTMTIYRPFLQAPK
                     PNMQIVVKSSLPTTVVATDIRRVAASLDRTVPVSRVQSMEQVVSTSTAKPRFTMLLLS
                     GFAAVALMLGAIGIYGVISYSVEQRNREIGIRMALGAQQSAVLNLVLRRGVVLAATGA
                     VVGLILSLATTRSLASVLYGVKAFDPATFVIAPLLLVAVALVASYIPARRAASVDPVT
                     VLNAE"
     gene            2606..>3685
                     /locus_tag="VLI40_08205"
     CDS             2606..>3685
                     /locus_tag="VLI40_08205"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU97198.1"
                     /translation="MNTLLKDVRYAIRGLARSRTFTIVAVLALAIGVGANTAIFSIVN
                     TVLLRALPYPQPDRIVMLWEHNLSKSVSPHNSVSPANFLAWQDEAKSFRAMGAWVDQQ
                     GAVSGGSRDPVSVPIRHASAAMFSVLGVTPALGRAYTREEDVQNGPRLAVISYDFWQQ
                     YFGGHADVIGTPFRLDGVSFTVLGVMPKDFRFFDPVKVWAPMQFDDSARVFSGRYLHV
                     AARLKPGVTVEQANTEIRTIAEQRARDVPQIDANWTANAQPLREALVGDVRTGLLVLS
                     GAVGFLLLIACVNVANLMLARASNRQKEFAIRASLGATPARLVGQLLTEGVVLSVVAS
                     LVGIGLALFGIRAIVALVPSTFPIPS"
BASE COUNT          675 a         1093 c         1156 g          761 t
ORIGIN      
        1 tgcacgacaa tggagccacg atctgcatgg tgacgcacga tccacgcttc gcacggcatg
       61 cggatcggtc ggtgcatctg ttcgatggaa gaatcgtgga ggaagagcgc ggtgagcgtg
      121 cagctacgga ccagcgcgag ctgcgtgaga gtggattcgg cgtagtgtaa tgagcacgtt
      181 gcttcaggac atgcgctacg cattgcgttc cttcggcaag gccagggcgt tcaccatcgc
      241 cgcagtgctc acgatcgcat tggggattgg cgccaatacc gcgattttca gcgtggtgca
      301 ttctgtgctc ttccgtgcgc ttccgttcag tgcacccgag cgactggtgc aggtttggcc
      361 gaacggtcca tcgagtcgcg ccgaatacgc tgaggtccgt gcgaagacgc ggctttatca
      421 agatatcgca gccgtatctt ccctgccgac cggtgcaact ctttcgggtc gcggtgagcc
      481 agagcggata gccattgcgt ctgcaacgtc gaacctgttt cccgtgcttg gcatcgcacc
      541 tgcgcttggc agaaacttta cggcgtccga ggagcggaca ggcgacgaca acgttgtgat
      601 gttgagtcac gacctgtggc agcaacgctt cggatccgat ccggcgatca ttggccgaac
      661 gattatgctg gatggcgtta gccggacagt gatcggggtg atgccatcgg acttccactt
      721 tccgagacgg gaggtcgaag cctgggtgcc cgtcgtaatg gatgcgagca acgtgggaga
      781 ttactgggga tctggcggct acgcggaaat tggccgtctg cgcgccggcg caacagcaac
      841 gagcgcgcag gatgagcttc gatcggttgc gcgtcagatc aggcatgaca atcccgtctg
      901 ggatccgggc gcgaattacg gaacggacgc agctgttgta tcgctgcaga cacagcttgc
      961 cggcgatgtt cgtcccacgt tgttggttct actcgcggcg gtcgccgtcg ttctgttgat
     1021 cgcatgcgcg aacgtcgcca acctgctgct tgcccgtggc gctgcgcgaa ccagggcgtt
     1081 cgccatccgc gccgcaattg gtgcgcgcag acgtcgtctg gttcagcagc tgctcacaga
     1141 aagcctgctc ctcgcaggca tcggcgcctt cctcggcttg atgctcgcct gggtcatcgt
     1201 cgcgccgctc agtcgcgggt tgctcgctga cactccgcag ttgttcaacg tcggtatcga
     1261 tggaggcctg cttgcgttca ccgtggccat agcggtgatc acgggtgtgt tgaccggcat
     1321 cgtgccggcg ctgcgggcat ccgatccgaa tttcaatact ctgctcaacg atgccagccg
     1381 cggcgcaagc agcggctttg gtcaccgcag attatccgac atgctcgtcg tactggaggt
     1441 cgccctcgca gtgacgctgg tcattggtgc agggttgctg atacgaagct tctggggatt
     1501 gagtagcaca gctccaggat tcgatcctgt tggtgtcacc actgcgcgcg tcgatctccc
     1561 gaagcagggg caggataagg aggagcacga gcgcgtgttt tactcacagt tgatccagcg
     1621 cgtcgcggag cttcccggcg tacgcagtgc agccgcgacg tcggagattc cgctcgatga
     1681 gcgatccgga atggcatttc gagttggggg gcagcttgag gacatccatc acgggcttcc
     1741 aaccgccaac ggatatcacg tcgtgacgcc cgcatatcta cgcacgatgg gtattccgct
     1801 acgcaacggc cgatcgttca ccgacgcaga tgcgaaaggc gctccggacg ttgcaatagt
     1861 gaatgaggcg ttggcgcgac gcttctggcc gaacggagac gcaatcggtc agcgcatcgg
     1921 ctacccgtgg gagagcccat ggatcacgat cgtgggtgta gcagcggaca tacacgagca
     1981 gggactcggg atcgccgaca cgaccatgac catataccgg ccgtttctgc aggcaccgaa
     2041 acccaacatg cagatcgtgg tgaagagcag ccttccaacg acggttgttg cgacggacat
     2101 tcggcgagtc gccgccagcc tggatcgcac ggttcccgtg agtcgggttc agagcatgga
     2161 gcaagtcgta tccacgtcga cggcgaagcc ccgtttcaca atgttgcttc tctccggttt
     2221 cgcggccgtt gcattgatgc tcggcgcgat cggtatatac ggcgtcatca gctactcagt
     2281 cgaacagcgg aacagggaaa ttggcatccg catggcactc ggtgcacagc aatccgcagt
     2341 gctgaacctt gtactgcggc ggggagttgt actagcagct accggcgcgg tcgtgggact
     2401 cattctctca ctcgcgacga cgcgtagcct cgcgagcgtt ctatacggcg tcaaggcatt
     2461 cgatcccgcc accttcgtga ttgcgcccct actgctcgtg gcagtggcac tggttgccag
     2521 ctatataccc gcacgccgtg cggcatcggt ggatccggta acggtgctca atgcggagta
     2581 agagtaacca acagatggaa tcttcatgaa cacactactc aaagatgtcc gctacgcgat
     2641 tcgtggactc gcgcgcagcc gcacgttcac catcgttgcc gttctcgcgc tcgccatagg
     2701 cgtcggtgcg aacaccgcca tcttctccat agtcaacacc gtcctgcttc gcgcgttgcc
     2761 atatccgcag ccggatcgca tcgtgatgct gtgggagcac aatctctcca agagcgtatc
     2821 tccacataac tcggtgagtc ccgcgaattt cctcgcgtgg caggacgagg caaagtcgtt
     2881 ccgcgcgatg ggtgcatggg tcgatcagca gggtgccgtg agcggcggat cgcgcgatcc
     2941 tgtctcggtg ccgatcagac acgcttcggc ggcaatgttc tccgtgctcg gtgtcacgcc
     3001 ggcgctgggc cgcgcgtaca cgcgtgagga ggatgtgcag aacggcccca gactggccgt
     3061 catcagctac gacttctggc aacaatattt cggcggccat gcagacgtga tcggtactcc
     3121 gttccggctc gacggcgtga gttttacggt gctcggggtg atgcccaagg atttccgctt
     3181 cttcgatccg gtgaaggtat gggcgccgat gcagttcgac gactccgccc gcgttttcag
     3241 cggacgatac ctgcacgttg cagcgcgtct caaacccggt gtcaccgtcg agcaggcaaa
     3301 caccgagatc aggacgatcg ccgagcaaag ggctcgcgat gtcccgcaga tcgacgccaa
     3361 ctggaccgcg aacgcacaac cgctgcggga agcgctcgtg ggcgatgtgc gtacgggatt
     3421 gctcgtgcta tcaggtgccg tgggattcct gctcctgatc gcatgcgtca acgtcgcgaa
     3481 cctgatgctt gcgcgagcaa gcaatcgcca gaaggagttc gcaatccgcg cgtcactcgg
     3541 cgccactccc gcccgactgg tgggccagct gttgaccgaa ggcgtggtgc tctctgtcgt
     3601 cgcgtctttg gtggggatcg gtcttgcact attcgggatc cgtgcaatcg tggcgctggt
     3661 cccgagcacc tttcccatcc catcc
//
LOCUS       DATIMD010000368         5462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1304653, whole genome shotgun sequence.
ACCESSION   DATIMD010000368 DATIMD010000000
VERSION     DATIMD010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5462
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1304653"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..422
                     /locus_tag="VLI40_08210"
     CDS             <1..422
                     /locus_tag="VLI40_08210"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSU97199.1"
                     /translation="ATVQGNDHSIYPALFAKDRAMELQFARAGGLLIAGTDPTGAGGV
                     IPGYSNQRQVELLVGSGFTPLEAIKICTLNGATYLGRAKEIGSITTGKQADLVVINGN
                     PAANVSDIRNVELVFKQGVGYDPAKLIASVQGQVGLF"
     gene            423..1022
                     /locus_tag="VLI40_08215"
     CDS             423..1022
                     /locus_tag="VLI40_08215"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HSU97200.1"
                     /translation="MDELRFVLASASPRRRELLGLIGIQHTVDPADIDESMHVAELPA
                     AHVERLAREKVSKVAARHPGALVIAADTVVVLDGRVMGKPRTEDQAYGMLSDLSGATH
                     TVLTGMACTFNGELESSVDDVSVTFRSLSKDEIREYIATGEPMDKAGSYGIQGYGATI
                     VQRIDGDYFAVMGLSLVRLVELMQKLRVSYHFGGATRHT"
     gene            1056..4697
                     /locus_tag="VLI40_08220"
     CDS             1056..4697
                     /locus_tag="VLI40_08220"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HSU97201.1"
                     /translation="MRKLFVLFAALLVGIGITSGPAQAQIGSTTDIVTGRVLGPDGKP
                     LENVTVAVKSAESGITRTKRTGADGRYTILFPDGGGQYRVEFRAIGFAPITRNVARQG
                     DEDRLVTDVQIGTQVAAKLSTVAVTARNGGRDRGAAPTPGESGRTLSADQLERLPVDM
                     SDISAIAAMAPGVVGIAGNDTTAAAFSVAGQRSTLNNTTLDGLSFGSFSVPAEGLRST
                     RVVTNTYDPSKGQFSGGEIASTTRGGTNELTGGFTYSRRDPVLEFEGADSAAVSPTYL
                     QDQISAGLGGPIIKDKMFVFGSAQLRRRSDPVQSLLASSPATLSTLGLDPRSVQAFES
                     QVNALGIPSPTAVPDRRIGDNTVGLIRLDYFLNDANSLTLRGDYRGSTQDPTRSNPYA
                     LPSSAGASTTTGAGLAATLTSNFESGIINELRTYYSRDNNHSEGYLTLPAGRVRISSP
                     LADGTQALSVISFGGNPGFPQAGSSALLEAADEVSYLSKDRTHRIRLGTLFDLNTFRQ
                     NVTNNRLGTFTYNSLGAFLSDTPDSYSRTLLSQERAGKTVAGAVYLGDTWRPNRQVQV
                     VYGVRAEGTKVDDAPPLNSDVESKFGLRTNDFPAEVHFSPRAGFSINLTKPNPNDPFS
                     QFQPAFLLRGGIGEFRAKTPTGLFTSAAGATGLIDTEQQVSCIGPAVPMPDWQSYLGD
                     PTTAPTSCVGNSSIPQNFSSVSPSVTLFAPDFEAPRSWRASLGLQHRLIGNITLSADA
                     SYARGVALYGVQDLNLRTTPAFTLADEGNRPVYAPAAAIVTGTGQVTSGGSRIYPQYG
                     QVLELTSGLQSDTRQLTLSLNGATAGGTVFTFAYTLQRTRDQSSFTCCSAAQGFASPT
                     TAGNPNISEWAPGDQDIRNTIQTYFTKPIKDWLDLTANARLSSGAPFTPIVSGDINGD
                     GSHNDRAFIFDPATAGNPALASAMKQLLASSPSNVRDCLTSQLGTVAGRNSCRGPWTP
                     SLDMQMNFHPDGFGLHRKMTFSLVGSNVLAGLDQVLHGSNLRGWGQFNRADPTLLYVR
                     GFDPVKQEFIYDVNGRFGSNNSARAVYRQPFVLALQARLALGPDPRDRFRQIFAARTD
                     SSSIASSAVQNPVAQIIQLRDSLNLSDAQVTQLTTVSDTLAAQSLALGVQIRAEVAKQ
                     GSGNPQAIMSKIRPQIIAGRQNLTTAMAQVQKILTADQWKKVPENIKNPPAFGGPGGG
                     RRGGRGPGE"
     gene            complement(4773..>5462)
                     /locus_tag="VLI40_08225"
     CDS             complement(4773..>5462)
                     /locus_tag="VLI40_08225"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HSU97202.1"
                     /translation="ARDLNWLFTNRKIPPRPVRHVQDQYLEFLEYLDVPYAPLEWNIG
                     PWAGERAWQADWISQFERPVAAIVIATSKPEKDWLPERWAAVCDALYSDYGLQPVLVG
                     GRSARELDAERIIRQHASTPIRSELGSGLRKLISILDASALVLAPDTGPLHMAVAMNR
                     PVISLLGYTNPKRTGPYRRFHDLMIDAYANDGESYVPTMENRPGRMPRITVDDVLARV
                     EVWRQRYAAPR"
BASE COUNT         1072 a         1627 c         1697 g         1066 t
ORIGIN      
        1 acgcgacggt gcaagggaac gaccactcga tttacccggc gctgtttgcg aaggaccggg
       61 cgatggagct tcagttcgcg cgggcgggcg gtctgctgat agcaggcacc gatcccacgg
      121 gagcaggcgg cgtcattccg ggctactcga accagcgaca ggtggagctg ctggtgggga
      181 gcggcttcac gcctttagaa gcgataaaga tctgcaccct gaacggcgcg acatatctgg
      241 gtcgtgcgaa ggagatcggg tcgatcacca ccggcaagca ggccgatctg gtcgtcatta
      301 acggaaatcc tgctgccaac gtctccgaca ttagaaacgt cgagttggtc ttcaagcagg
      361 gcgttggata cgatccggcc aagctgatcg cgtcggtgca gggacaggtg gggctcttct
      421 agatggacga gctccgcttt gttctcgcgt ctgcgtcccc gcgccggcgc gagcttctgg
      481 gcctgattgg tattcagcac acggtcgatc cagcagacat cgacgaatcg atgcacgtcg
      541 ccgagttgcc ggcggcgcac gtcgaacgtc tcgcgcgcga gaaagtgtcg aaagtcgctg
      601 ctcgacatcc tggagcattg gtgatcgccg ctgatacggt tgtagtgctg gatggaaggg
      661 tgatgggtaa gccgcgtacg gaagaccagg cgtacgggat gctttcggat ctcagcggcg
      721 caactcacac agtactgaca ggaatggctt gcacgttcaa cggcgaattg gagtcctccg
      781 tagatgatgt gtccgtgacg ttccgaagtt tgtcgaagga tgaaattcgc gaatacatcg
      841 cgaccggcga gccgatggac aaggctgggt cgtacggtat tcagggttac ggcgcaacga
      901 tagtacaacg cattgacggt gactacttcg cagtaatggg actgtcgctg gtgcggctgg
      961 tcgaactgat gcaaaaattg cgcgttagct atcactttgg tggagcgacg cgacacacct
     1021 agattgcccc gcccgtcggg gcgggaaatg cggtcatgcg caagctcttc gttttgtttg
     1081 ccgcgctgct ggttggcatc gggatcacgt ccggtccggc gcaggcgcag ataggtagca
     1141 ccacggacat cgttaccggc cgcgtgcttg gccctgacgg gaagccgttg gaaaacgtta
     1201 ccgtcgcggt caagtccgca gaaagcggaa tcacgcgcac caaacgtacc ggtgccgacg
     1261 gacggtacac gatcctcttt cccgacggcg gtggtcagta ccgcgtcgag tttcgcgcga
     1321 tcggtttcgc gccgatcacg cgcaacgtcg cgcggcaggg cgacgaggat cgtctcgtca
     1381 ccgacgtgca gatcggcacg caggtcgcgg cgaagctgtc cactgttgcg gtaacggcgc
     1441 gcaacggtgg ccgcgatcgg ggcgcagcgc cgacaccggg cgagagtggg cgaacgctgt
     1501 cggcggacca gctcgagcgg cttccggtcg acatgagcga catctcggcg atagctgcaa
     1561 tggcacccgg tgtcgtggga atcgccggca atgatactac cgctgctgcg ttctccgtcg
     1621 cgggtcaacg atcgacgctc aacaacacga cgctggatgg tctctcgttc gggagcttct
     1681 ccgtgccggc tgaaggatta cgcagcacgc gcgtcgtgac caatacgtac gatccatcca
     1741 agggacaatt cagcggcggc gagattgcat cgaccacgcg cggcggtacg aacgagctga
     1801 ctggtggctt cacgtactca cgccgcgatc cggttctcga gttcgaaggc gcggacagtg
     1861 cggcagtctc gccgacatat ctgcaggatc agataagcgc gggacttggc ggtccgatca
     1921 tcaaggacaa gatgtttgta ttcggatccg cgcagctgcg cagacgcagc gatccggtgc
     1981 agtcgttgct cgcatcgtcg ccggccactt tatcaacgct gggcctcgat cctcgttctg
     2041 tgcaggcttt cgagtcgcag gtaaacgcgc tcgggattcc gtctccgacg gcggtacctg
     2101 accggcgcat cggcgacaat acggtcggtc tcattcgtct ggactatttc ctgaacgacg
     2161 cgaacagtct tactcttcgc ggcgactatc gtggcagcac gcaggatccc acgcgctcca
     2221 atccttacgc gcttccgtcc agcgcaggcg cgagtacgac gacgggggcc ggtctcgcgg
     2281 cgacgctcac ctccaacttc gagagcggca tcatcaacga gttgcgcacg tattattcgc
     2341 gcgacaacaa tcattccgaa ggatacctga cacttcctgc gggacgtgtg aggatcagct
     2401 caccactggc ggatgggacc caggcactca gtgtgatcag ctttggtggc aatccgggtt
     2461 tcccgcaagc gggcagctcc gcactgctcg aagcagctga cgaagtttcg tatctcagca
     2521 aggatcgcac gcatcgcatt cgccttggca ctctcttcga tctcaacacc ttccggcaga
     2581 acgtcaccaa caacagactc ggaacgttca cctacaattc gctgggcgcg tttctatccg
     2641 acacgcctga cagctacagc agaacgctgc tctctcagga gcgggcgggg aagacggttg
     2701 ccggcgccgt gtatctgggc gacacgtggc ggccaaatcg gcaggtgcag gtggtgtatg
     2761 gtgtacgcgc cgagggaacg aaggttgacg atgcaccgcc gctgaactcg gatgtcgagt
     2821 caaagttcgg tctgcgcacg aacgactttc cggctgaggt tcacttcagt ccgcgcgcag
     2881 gattttcgat caatctcacc aagccgaacc ccaacgatcc gttctcgcaa ttccagccgg
     2941 cctttctgct tcgtggcgga atcggtgagt tccgtgcgaa gaccccaaca ggattgttca
     3001 cctctgcggc cggcgcgacc ggactgatcg ataccgagca gcaggtatca tgcataggac
     3061 cggcggttcc aatgccggac tggcagagct atctgggcga cccgacgact gctccgacat
     3121 cgtgcgtggg aaacagctcg atcccgcaga atttttcatc ggtcagtccg tcggtcacat
     3181 tgttcgcgcc ggatttcgag gcgccgcgct catggcgtgc atcgcttggt ctacagcatc
     3241 gactgatcgg caacatcacg ctctctgccg acgcgagcta tgcgcgcggt gtggcactgt
     3301 atggagtgca ggatctgaac ctccgcacga cacccgcctt cacgcttgct gacgagggca
     3361 atcgccccgt gtatgcacct gcggctgcga ttgtaacggg cactggccag gtaacatctg
     3421 gtggatcgcg catctatccg cagtacggcc aggtgctcga gctcacatcg ggattgcaga
     3481 gtgatacacg tcaactgacg ctgtctctca acggtgcaac tgccggtggg acagtcttca
     3541 ccttcgcata cacactgcaa cgtacgcggg atcagtcgtc gttcacgtgc tgctcggcgg
     3601 cacagggctt cgcgtcgccg acgactgccg gaaacccgaa tatcagcgag tgggcaccag
     3661 gcgatcagga catccgcaat acgattcaga cttactttac gaaaccgatc aaggactggc
     3721 tcgatctcac cgcgaatgcg cgtctcagct cgggcgctcc attcactccg atcgtgtcgg
     3781 gtgacatcaa cggggatgga tcgcacaatg atcgcgcttt catattcgat ccggccacgg
     3841 cgggcaatcc tgcccttgcg tcggcaatga agcaattgct cgcgagctct ccgtccaacg
     3901 tgcgtgactg cctcacgtcg cagctcggaa ccgtggcggg gcgcaacagt tgtcgcggtc
     3961 cgtggacgcc gtcgctcgac atgcagatga atttccatcc ggatggcttc ggtctgcatc
     4021 gcaagatgac gttctcgctg gtcggatcca acgtgctcgc aggcctggat caggtgctgc
     4081 atggcagcaa cctgcgcggc tggggccagt tcaatcgtgc agatccgacg ctgctatacg
     4141 tgcgcggctt cgatccggtc aagcaggagt tcatctacga tgtgaacggg cgcttcggct
     4201 cgaacaactc tgcgcgcgcc gtatatcggc aaccattcgt gctcgcgctt caggccaggc
     4261 tggcgctcgg tcccgatccg cgcgatcgct tccggcagat ctttgccgcg cgcacggaca
     4321 gctcgtcgat cgcctcgtct gctgtacaga acccggttgc gcagatcata cagctacgcg
     4381 actcactgaa cctgagtgat gcgcaggtga cgcagctcac aacggtctcc gacacgcttg
     4441 ccgcgcagtc actggcactt ggtgtacaga tcagagcgga agtagcgaag cagggctccg
     4501 ggaatccaca ggcgatcatg tcgaagatcc ggcctcagat tattgcgggc cgccagaacc
     4561 tcactacagc gatggcccag gtccagaaga ttctgacggc ggatcagtgg aagaaggtgc
     4621 ccgagaacat caagaatccg ccggcgttcg gtggtcctgg cggcggccgt cgcggcggtc
     4681 gcggaccggg ggaataacgg cgattacgga attattaccg acgacgctat cggcgcgccc
     4741 aataacgtcg tgggtaacgc atgcgaatgc catcaacgcg gcgccgcata tcgctgccgc
     4801 caaacctcta cgcgcgccag gacgtcgtcg acggtgatgc gcggcatgcg gccgggccgg
     4861 ttctccatcg tgggtacgta actctcccca tcattggcgt acgcatcgat catgagatcg
     4921 tgaaagcgcc gatacgggcc ggttcttttc ggattggtgt agccaagtag cgagattacg
     4981 ggtcggttca tcgcgacagc catgtgaagc ggaccggtgt ctggcgccag caccagcgcg
     5041 gatgcatcga ggatgctgat gagcttgcgc aggccgctac caagctcgga tcgaatcggt
     5101 gtcgaagcgt gctgtcggat tatgcgttcc gcatcgagct cgcgcgccga acgaccgccg
     5161 accaggaccg gctgcagtcc gtaatcggaa tacagcgcat cgcacaccgc cgcccagcgc
     5221 tcgggaagcc agtccttctc gggcttgctc gttgcgatga cgatggcagc tactggacgc
     5281 tcgaactgtg aaatccagtc cgcctgccat gcacgctcgc cagcccatgg accgatgttc
     5341 cattcgagcg gcgcgtaggg tacatcaaga tattcgagaa attcgaggta ttgatcctga
     5401 acgtgcctca cggggcgtgg cgggatcttt ctgttggtga acagccagtt gagatcgcgt
     5461 gc
//
LOCUS       DATIMD010000369         2871 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5347292, whole genome shotgun sequence.
ACCESSION   DATIMD010000369 DATIMD010000000
VERSION     DATIMD010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2871
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5347292"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..316)
                     /gene="msrA"
                     /locus_tag="VLI40_08230"
     CDS             complement(<1..316)
                     /gene="msrA"
                     /locus_tag="VLI40_08230"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR00401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HSU97203.1"
                     /translation="MTNSQSEVATLGAGCFWCVDTLFRELRGVKSVVSGYAGGTRANP
                     SYEQVCTGATGHAEVVQITFDPQQISYHDLLEVFFSVHDPTTLNRQGADVGTQYRSVI
                     FAH"
     gene            complement(359..724)
                     /locus_tag="VLI40_08235"
     CDS             complement(359..724)
                     /locus_tag="VLI40_08235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97204.1"
                     /translation="MSPTPSTILVIAKEPLIQTLMCSLVDLSGHRAAQPCSDESVADS
                     VARVRPHLVLLDCEHDDACEDDAYRAAASVGAAVLLFTPSRSRAEVADLAAERGLQSI
                     ALPIRLHEFSEQLQLSLSA"
     gene            complement(808..1359)
                     /locus_tag="VLI40_08240"
     CDS             complement(808..1359)
                     /locus_tag="VLI40_08240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97205.1"
                     /translation="MGYGIGAAALFVAMFAGDMRPLPAQVVRYGVMGDSVTAELRAAW
                     SDDSMQSERAYCVQRARISSRPTLGGGIDSIFRVLAVKPATPTGQDPNHVQFECAKGT
                     PELHTHTPATCLTDDKSSCRADGPLAYSCQPSRSDYEELLARGDEYGIIQCDRRAFRF
                     YYPSEYVAQTQKAGTAMGGTSGP"
     gene            complement(1370..2194)
                     /locus_tag="VLI40_08245"
     CDS             complement(1370..2194)
                     /locus_tag="VLI40_08245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97206.1"
                     /translation="MTSNFARHVALIISASAFVTSIAFAQGATTYAPGKLRYHVTTVS
                     TRAQPLGGGRAPFDFSTTTNQWISLEVAPQSSDTLKVAMTVDSIRITSTLDAPAPDIA
                     VLQGAKFTGTMSPRGRIYTLTPTGNSTDGKLGATATALKRFLLPLPPRALAPGASWAD
                     TVVEHPKVGTINITSSSVTTYKVAGDTTVSGQHAWRIDRYTTIAQLGKGTEAGQPLEI
                     SSSGTVTGMQFFTDKGVLLGGQSTQRTDLTEKMNESEGAPIQQTFKSTVELLPHGG"
     gene            2459..>2871
                     /locus_tag="VLI40_08250"
     CDS             2459..>2871
                     /locus_tag="VLI40_08250"
                     /inference="COORDINATES: protein motif:HMM:NF025013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4142 domain-containing protein"
                     /protein_id="HSU97207.1"
                     /translation="MATSDTTAASAMNNRTDTTASGGAVASPKNDWTDAQILAFAATA
                     NAGEVQEGQLAEHKATNPAVKNFAKLMVTDHTKMLSDTRALEKKLAVAPDSSKDDVKD
                     LAKSSQDDMKDLSNKKAGKDWDEDYIGKQVDDHQKV"
BASE COUNT          551 a          899 c          933 g          488 t
ORIGIN      
        1 aatgcgcgaa gatgacggag cggtactgcg tgcccacatc cgcaccctgc cggttcagcg
       61 tcgtcggatc gtgcacgctg aagaacacct cgagcaagtc gtgatagctg atctgctgcg
      121 gatcgaaggt gatctgcacg acctctgcat gtccggtcgc tccggtacac acctgctcat
      181 atgagggatt ggcgcgcgtt ccgcccgcat agccggagac gacgctcttc acgccgcgca
      241 gctcgcggaa gagcgtgtcg acgcaccaga agcatccggc gccaagggtc gcgacttcgc
      301 tttgtgaatt tgtcatgcgt gaaatctagc ggcttccagt acgggcaccg ccgcgcgctc
      361 aagcgctgag cgacagctgc agctgctcgg agaactcgtg cagccgtatc ggcagcgcga
      421 tcgactgcag cccgcgctcc gccgcgaggt ctgccacctc cgcgcgcgag cgcgaaggcg
      481 tgaagagcag caccgccgcg ccgacactcg ccgcggcgcg atacgcgtcg tcctcgcatg
      541 catcatcgtg ctcgcaatcg agaaggacca ggtgaggacg cacacgtgcg acggagtcgg
      601 ccaccgactc gtcgctgcac ggctgggccg cgcgatgccc cgacaagtcc acgagggagc
      661 acatgagcgt ctggatcagc ggttccttgg cgatgaccag gatcgtgctc ggcgtcggcg
      721 acaacgggac ctgcacagct agaggggcaa tcctccagag ctatcgcaat cggcggtcca
      781 cgagcctcga gtggagtaag ctgctcgtca ggggccggaa gtgccgccca tcgccgttcc
      841 agccttttgc gtctgcgcga cgtactcgct gggatagtag aaacggaagg cacggcggtc
      901 gcactggatg attccgtact cgtccccgcg ggcgagcagc tcctcgtagt ccgagcggct
      961 tggctggcag ctgtacgcca gcggaccatc ggcgcggcag gagctcttgt cgtccgtgag
     1021 gcacgttgcg ggagtgtgcg tgtgcagctc cggcgtgccc ttcgcgcact cgaactgcac
     1081 gtgattcgga tcctggccgg taggggtggc gggtttgacc gcgagcacgc gaaagatcga
     1141 gtcgatcccc ccgccgagtg tgggacgcga ggagattcgg gcgcgctgca cgcagtacgc
     1201 gcgctcgctc tgcatggagt catcgctcca cgcggcgcgc agctctgccg tcaccgaatc
     1261 acccatcacc ccgtagcgca ccacctgcgc cgggagcggc cgcatgtccc cggcgaacat
     1321 cgccacgaaa agcgcggccg caccaatgcc gtaccccatg tgccttcggt caacctccgt
     1381 gcggaaggag ctccactgtc gatttgaacg tctgctggat gggtgcaccc tccgactcgt
     1441 tcatcttctc ggtgagatcc gtgcgctgcg tcgactgtcc gccgagcagc actcccttgt
     1501 cggtgaagaa ctgcataccc gtgaccgtgc cgctgctgct gatctccagc ggttggccgg
     1561 cctctgtccc cttgccgagt tgcgcgatgg tcgtgtaacg atcgatgcgc cacgcgtgct
     1621 gcccgctcac ggtggtgtcg cccgcaacct tgtacgtcgt gaccgagctc gacgtgatgt
     1681 tgatcgttcc gaccttcgga tgctcgacga cggtgtcggc ccagctggcg cctggcgcga
     1741 gcgcgcgcgg cggcaacgga agcagaaagc gcttgagcgc ggtcgcggtt gcgccgagct
     1801 tgccatcggt ggagttgccc gtgggcgtga gagtgtagat tcgcccgcgc ggagacatgg
     1861 ttccagtgaa tttcgcgccc tgcagcacgg cgatatctgg cgccggcgca tccagcgtcg
     1921 atgtgatgcg aatggaatcc accgtcatcg cgaccttgag cgtatcgctg gactgcggcg
     1981 cgacctcgag agagatccac tgattcgtgg tcgtcgagaa gtcgaatggc gcgcgtccgc
     2041 cgccgagagg ctgcgcgcgc gtgctcacgg tggtcacatg ataccggagc ttacccggcg
     2101 cgtatgtggt ggcaccctgc gcgaatgcga tggacgtcac aaatgcactc gccgaaatga
     2161 tcagcgcgac atggcgagca aagttcgagg tcatgcaaac tcctggtgcg gtaagagatg
     2221 cgttggccat ggaaagaccg gtcgaatcct ggaattgaac tgaatacccc gaaagcaaaa
     2281 gaatgtccac aggacgcgcg ggaagcacgc ctcttgcaaa ctctgcctgg tgagcccggg
     2341 cgttgccggg gcgccagact atacggagga agacatgaac cgctctctat cacgttttag
     2401 catcgcctcg gccgttgcag catgcacagt gctcgccgcg tgccaaaaaa agggcgatgt
     2461 ggctacaagc gacacgacgg ctgcgtccgc catgaacaac cgcaccgata ctaccgcatc
     2521 aggcggagcc gtggcgtccc cgaagaatga ctggaccgac gcgcagattc tcgcgttcgc
     2581 cgcgactgca aacgcgggtg aggttcagga aggccagttg gcggagcaca aggcgacgaa
     2641 tccggccgtg aagaacttcg cgaagctgat ggtcacggac cacacgaaga tgctctccga
     2701 tacccgtgcg ctcgagaaga agctcgcggt cgcacctgac agctccaagg atgacgtgaa
     2761 ggatctcgcc aagagcagcc aggacgatat gaaggatctg tcgaacaaga aggccggcaa
     2821 ggactgggac gaggactaca tcggcaagca ggtcgacgac caccagaagg t
//
LOCUS       DATIMD010000370         2066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2743313, whole genome shotgun sequence.
ACCESSION   DATIMD010000370 DATIMD010000000
VERSION     DATIMD010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2743313"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            317..1726
                     /gene="argH"
                     /locus_tag="VLI40_08255"
     CDS             317..1726
                     /gene="argH"
                     /locus_tag="VLI40_08255"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HSU97208.1"
                     /translation="MTADSHKLWGGRFAAPTAHALDALNRSIATDFRLWPFDIQLSQA
                     WASALAEAGVLTEEERDQIRGGLDVVAEKLANGAQPEESDEDVHTMIDRMLHIEVGEP
                     ASRLHTGRSRNDQVATATRMWTMDASARVETAIQTLQRVMLEHAEQLRTTLIPAYTHM
                     QRAQPVSAAHWMLSHFWQLERDRIRVANAAASASTLPLGSGAIAGCAFPVPRDQIRDE
                     LGFTSISRNSIDATGDRDFVADMLYAMTMLGVHLSRLSEDLILYGSSEFGFVTFGDTF
                     STGSSMMPQKRNPDALEIARGSAGRMLGNLTSIIATIKSLPSGYNKDLQDDKRPMFDS
                     VDTMLLVLPAVAGTLGELKFNAQRMRAALSSSMMATDLADYLVAKGTSFREAHGVVGS
                     LIRASETDGIELDRMPFATFAAAHPSFGQDVFDWLSPDASVARRNVPGGTGPDAVDDQ
                     ITAAHAALGAVVRRLQLIP"
     gene            1742..>2066
                     /locus_tag="VLI40_08260"
     CDS             1742..>2066
                     /locus_tag="VLI40_08260"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HSU97209.1"
                     /translation="MSGSSDETPTGPDLSAGIPASSIADGAMLLGHVGSDPVLVARAG
                     GSLYAIGATCTHYGGPLAEGIIVGDTVRCPWHHACFSLKTGEPLRAPALDRVTCYRVD
                     ESAGNV"
BASE COUNT          399 a          698 c          593 g          376 t
ORIGIN      
        1 gaagggagat cagcaagccg cgtaatacgt gcgtcgcgcg ccgtaatccc gcaacgcgac
       61 gtcctcgtag gggcaggccc ccgtgcctgc ccccgtcacg aaaatcacgc ccccgccgct
      121 tgaacgccgg ttcgcacccg cagccagacg ttgaaccgtc gggcattcgt cgggcattcg
      181 tcgggcattc gtccgaacgt acaatcgcat cgcaacgcca tgcgcgaacc ggccacgcga
      241 cggtgatcgg atattttcgt cacgagggcg ggcacggggg cccgccccta cagattccac
      301 gctatacctt acgtaaatga ccgccgactc ccataaactc tggggtggcc gcttcgccgc
      361 gcccaccgca cacgcactcg acgcactcaa tcgatcgatc gccaccgact tccgtctctg
      421 gccattcgac attcaactgt cccaggcatg ggcctctgcg ctcgccgaag ctggcgtcct
      481 tacggaagaa gagcgcgacc agatccgtgg cggactcgat gtcgtcgcag aaaagctcgc
      541 caacggtgca cagcctgaag agtctgacga ggatgtgcac acgatgatcg atcgcatgct
      601 gcacatcgaa gtcggtgagc ccgcctcacg ccttcacaca ggccgctcgc gcaacgatca
      661 ggtagcgacc gctacacgca tgtggacgat ggacgcgtca gccagagtcg aaaccgcgat
      721 ccagactctc cagcgcgtga tgctggagca cgcggagcaa ttgcgtacca cgctgattcc
      781 cgcgtacacg cacatgcagc gcgcacagcc cgtctccgcc gcccactgga tgctcagcca
      841 cttctggcag ctcgaacgcg atcgcatccg tgtcgcgaat gccgcagcct ctgcatccac
      901 actcccgctc ggctccggtg caatcgctgg atgcgcattc cccgttccac gcgaccagat
      961 ccgcgacgag ctgggcttca cgagcatctc ccggaactcg atagatgcca ccggcgatcg
     1021 tgatttcgtc gccgacatgc tctacgcaat gacgatgctc ggcgtgcatc tgtcgcgtct
     1081 cagcgaagac ctgattcttt acggttccag tgaattcgga ttcgtgactt tcggagacac
     1141 gttcagcacc ggatcgagca tgatgccgca gaagcgcaat cccgacgcgc tcgagattgc
     1201 gcgcggctcc gccggaagaa tgctcggcaa cctcacttcc atcatcgcga cgatcaagag
     1261 cctgccgagc ggttacaaca aggatctgca ggacgacaag cgtcccatgt tcgactccgt
     1321 cgataccatg ctgctcgtgc tccccgcagt cgccggcaca ctcggcgagc tcaagttcaa
     1381 cgcgcagaga atgcgcgctg ccctctcatc cagcatgatg gcaactgacc tggccgacta
     1441 cctcgtcgcg aaggggacca gtttccgcga ggcacacggc gttgtcgggt ctctgattcg
     1501 cgccagcgag acagatggca tcgagctcga caggatgccg ttcgcgacgt ttgccgctgc
     1561 gcatccctcc ttcggtcagg atgtattcga ctggctctct cccgacgcat cggttgctcg
     1621 ccgaaacgtc cctggcggaa caggccccga tgcagtagat gatcagatta ccgctgcaca
     1681 cgcggcactt ggcgcggttg tccgcaggct gcagctcatt ccctgaactc gaggtggtac
     1741 gatgtccggt tcgtctgacg agacacccac aggacccgat ctctccgcgg gaattccagc
     1801 gtcatcgatc gcggacggcg ccatgctgct tggccatgtg ggtagcgatc cggttctcgt
     1861 agcgcgcgcg ggcggatcgc tgtacgcgat cggtgcgacc tgcacgcact acggcggacc
     1921 actagccgaa ggaatcatcg tcggagatac cgttcgttgt ccctggcatc acgcgtgctt
     1981 cagcctcaag accggcgagc cgttgcgggc tccggcactg gatcgtgtca catgctaccg
     2041 cgtcgacgaa agtgcgggca atgtgt
//
LOCUS       DATIMD010000371         5239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2166347, whole genome shotgun sequence.
ACCESSION   DATIMD010000371 DATIMD010000000
VERSION     DATIMD010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5239
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2166347"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..768
                     /locus_tag="VLI40_08265"
     CDS             <1..768
                     /locus_tag="VLI40_08265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97210.1"
                     /translation="AIVGNGPPAGTHEIALHHSTTVVGQGNALAMVWPTNSKTAFGLM
                     VNVLDLGQQTLTNDQGIGIGTATPTDYSFAATYAVAPARWLALGITAKHVEAGIPCTG
                     ECGGLDIASSRSNGIDVGMQFRPDAIPLTLAAAARNLGIAGVAGRPGRLDFGADYKVV
                     AFARGEDSVEVHGAADLVSTVRMDSTTARLGTDIIVDERLHVRAGYIRDPVNGSGGAI
                     GVGLQSGKLVFDIGRTYGGLTGTNDKPPTYFSLRYLW"
     gene            869..1870
                     /locus_tag="VLI40_08270"
     CDS             869..1870
                     /locus_tag="VLI40_08270"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSU97211.1"
                     /translation="MTDQSHSSPQLPIALLLQAVDAPLPHSVAGWVDRQPVTVVPVPS
                     IDELMVYALRSRPRFIVIDGRTPVGDPLAACRKIKRDPFTGVVPVIYVAPDGMRPRIE
                     ALDALADDVVSADMDDAETLTRLRCTLARSDRDVNVHPSTRLPGAPAIHDAIRDRLDT
                     AFAACYADLDHFKEFNDRYSYVEGDRVIRLLAALLHDTVRGLVGDEGFVGHIGGDDFI
                     FLIPRDRVDDVCTEIVQTFDTLIAYQYSENDRRAGYFFGKDRRGQLHRVPLMTLSIGV
                     VTNERRTFTSSVGVSALATEMKTYAKTLPGSVYAIDRRTDDRSEIQTPQLTETGARQ"
     gene            1867..2586
                     /locus_tag="VLI40_08275"
     CDS             1867..2586
                     /locus_tag="VLI40_08275"
                     /inference="COORDINATES: protein motif:HMM:TIGR02098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HSU97212.1"
                     /translation="MTPMVVQCSSCLTEFELEPSKVPAGGVRARCSVCSAVIDVPAPP
                     VAAHENRASAQATPAQATHEQATHEQAAPAQVAHEPEPVAPEPTTHAAPAEPVAAEPP
                     SPPSPSPVAPVAATTASTTAASVMESAWSLPKPSVTPAISSMETDAAQRRPINPFLTR
                     DPALRAKRLARALVSDIVAYHPARHAEGLRDGTLKTLFRDEIKKSYEEYVDQVGRDFA
                     GSTTHFQDALNDVLASGKKLF"
     gene            2817..3936
                     /gene="prfB"
                     /locus_tag="VLI40_08280"
     CDS             join(2817..2879,2881..3936)
                     /gene="prfB"
                     /locus_tag="VLI40_08280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_319006963.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HSU97213.1"
                     /translation="MLDHERARLLERATQRLAELRGIFDIAGKQERLTALEARTAEPE
                     FWDDREAAQGVVQETKLLKTWIDPFEALDARVRSAVELDEMLRESPDAEMLADLDAEL
                     ESIDEALGAFELRSLLRGEDDFRDAQVEIAAGAGGTEAQDWAEMLMRMYTRWAERRGF
                     KVEVLDRSEGEEAGIKGAVLEISGDHAYGFLKPEAGVHRLVRISPFDSNARRHTSFAS
                     IFVYPVVNEEINIEIKEDDLRIDVYRASGAGGQHVNKTSSAVRITHIPTGLVTASQQE
                     RSQYKNKATALKMLKNKLYQAEVARREAEKAKVDASKTSVSFGNQTRSYVFQPYTMVN
                     DHRTELKIPDVQKVMDGGIDPFIEAYLKMQAEAGTTGS"
     gene            3933..>5239
                     /gene="lysS"
                     /locus_tag="VLI40_08285"
     CDS             3933..>5239
                     /gene="lysS"
                     /locus_tag="VLI40_08285"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HSU97214.1"
                     /translation="MTDELHFLMAARREKLDAMRASGVEPFAYSFDRTATAQHAVSLA
                     PEDQSGESSERVSVAGRIVSMRAHGKTAFAHLADATGRVQLYFRRDDLGDAYSLIDML
                     DIGDVIGVSGAVFRTRTGEPTIRVAAFEVLAKSLRPLPFAKEETAADGSVVRHMGFSD
                     PEQRFRQRYADLAVNPEVRATFVARARMTGAIRSFLDARGYLEVETPVLQPLYGGAAA
                     RPFVTQHNALDMTLYLRIADELYLKRLIIGGMERVYEIGHDFRNEGVDRTHNPEFTML
                     EFYEAYADYEVMMDVVERLIVAAADAVRGVESFADAVPVFTTPFRRIEWLASINAGLG
                     ADILALDHDGLIRHATRLGVPRAATMSRPKLMDEIFQLLVESKITEPTFVVAYPVELS
                     PLAKPKRGDPRLTERFELFANGRELANAFSELNDPIDQRERFEG"
BASE COUNT         1004 a         1592 c         1664 g          979 t
ORIGIN      
        1 gcgatagtcg gaaacggccc acccgccggg acgcatgaga tcgcgctgca ccattccaca
       61 acggtggtgg gtcagggaaa tgccctcgcc atggtgtggc ccaccaatag caagacggca
      121 ttcggtctca tggtcaacgt cctggacctc ggccagcaga cgctgacaaa cgatcagggc
      181 atcggaatcg gcacggcaac tccaacggat tattcctttg cggcgacata cgcggtcgct
      241 ccggcacgct ggcttgcgct cggaattacc gcaaaacacg tggaggcggg aataccgtgc
      301 actggcgaat gcggcgggct cgatatcgcc agctcccggt ccaacggcat agatgtgggc
      361 atgcagtttc ggcccgacgc aattcccctt accctcgcgg ctgccgcccg taatcttggc
      421 attgccggcg tggccggccg gccgggccgg ctcgacttcg gcgctgacta caaagtggtc
      481 gctttcgcgc gtggagagga cagtgtagag gtacatggtg ccgcagacct ggtctcaaca
      541 gtcagaatgg atagcaccac ggctcggctc ggcaccgaca tcatcgttga tgagcggctg
      601 cacgtccggg ctggctatat ccgggacccg gtaaacggct ccggcggcgc gataggcgta
      661 gggctccaat ccggtaaact agtgtttgac atcgggcgta catacggcgg gctcacgggg
      721 acgaacgaca aacccccgac gtatttctcg ctccgatact tgtggtaggt tgcatggcag
      781 gtcgtagaac ccggcgcaag ccggccgcac gagtacctta tgaggctgcc gcgatgcctg
      841 cctgtgcggt tatcttccag agatcgagat gacggaccag tcgcattcca gcccccagct
      901 ccccattgcc ttgctgcttc aggctgtgga tgctccgctc ccccattcag ttgcggggtg
      961 ggtcgaccgt cagcctgtga cggtcgttcc ggtcccatcc atcgacgagc tcatggtata
     1021 tgcgctgcgc tcgagaccgc gctttatcgt catcgacggc cggacgcctg tgggcgatcc
     1081 gttagctgcc tgccgcaaga tcaagcgcga tccatttacg ggcgtggtgc cggtcatcta
     1141 tgtagcgccg gatggcatgc gcccccggat agaggcactc gatgccctgg ccgatgacgt
     1201 tgtgtcggcc gacatggacg acgccgagac gctgacgcgc ctgcgctgca cgctcgcacg
     1261 ctctgatcgc gacgtcaacg tccacccgtc gacacggctt cctggcgcac ctgcgatcca
     1321 cgacgcaatc cgtgaccggt tggacacggc attcgcggcc tgctacgcgg atctcgatca
     1381 tttcaaggaa ttcaacgatc gctacagcta cgtcgagggc gatcgggtga ttcgactgct
     1441 cgccgcgctg cttcacgaca ccgttcgcgg gctggttggc gacgagggct tcgtggggca
     1501 cattggcggc gacgatttta ttttcctgat accgcgcgac cgagttgacg atgtgtgtac
     1561 cgagatcgtc cagacctttg atacgctcat cgcgtatcag tattccgaga acgatcggcg
     1621 cgcaggctat tttttcggga aggacaggcg cggacagctg caccgcgttc cgctgatgac
     1681 gctttcgatc ggtgtggtca cgaacgaaag gcgtacattt acgagctccg tgggtgtgag
     1741 cgcgcttgcc actgaaatga agacgtacgc gaagacgctt ccgggatcgg tctacgccat
     1801 cgacaggcgt accgatgatc gatccgagat ccagactccg cagttgactg aaacaggtgc
     1861 ccgccaatga cgccaatggt cgtacagtgt tcctcgtgcc tgaccgaatt cgagctggag
     1921 ccgagcaagg ttccggctgg cggcgtccgt gcgcgctgct cagtctgctc cgcggtaatc
     1981 gacgttcccg cgccaccggt tgctgcgcac gaaaatcgcg catctgcgca agccacgcct
     2041 gcgcaagcca cgcatgagca ggccacgcat gagcaagccg cacctgcgca agtcgcacat
     2101 gagcccgagc cggtcgcgcc cgagcccacg acccatgctg cgcctgcgga gcccgttgcg
     2161 gctgagccgc cgtctccgcc gtcaccgagt cccgtcgccc ccgttgcagc aactactgcg
     2221 tcaaccactg ctgcgagcgt gatggagtct gcgtggtcgt tgcccaaacc ttcggttaca
     2281 ccggctatct cctccatgga aacggacgcg gctcagcgcc ggccgatcaa tccgtttctg
     2341 actcgcgacc cggctctccg cgccaagcgt ctcgcacgcg cgctggtctc cgacatcgtc
     2401 gcatatcatc cagctcggca cgccgagggg ttgcgcgacg gaacgctcaa gacgttgttc
     2461 cgcgacgaga tcaaaaagag ttacgaggaa tacgtcgacc aggtcgggcg tgacttcgcg
     2521 ggatcgacca cgcactttca ggacgcgttg aacgacgttc tcgcgagcgg caagaagctg
     2581 ttctaaggac acggcgcatc ccgcgatgtc gtcattcccg ccgtagagcg cggattcatc
     2641 cgcgccttgg gaatccatgt tatcgttctc tggatgcgat gaaagcagag aaccggtcgg
     2701 tagcagacgg attcccgctt tcgcggggat gacgagtgcc ggtgcttccc gctttcgcgg
     2761 gaatcgacga ttcctgctcg gcaacggttt ttcaactttc ggacttataa tcaatcatgc
     2821 tggatcacga acgggcgcgc ttactcgagc gcgccacgca acgcctcgca gaactacgga
     2881 ggtatctttg acatcgccgg gaagcaggaa cgcctgacgg cgctggaagc acgcacggcc
     2941 gaacctgagt tctgggacga ccgcgaagcc gctcagggcg tcgtgcagga aaccaaactt
     3001 ctcaaaacgt ggatcgatcc gttcgaggcg cttgacgcgc gcgttcgcag cgccgtcgag
     3061 ctggacgaga tgctgcgcga gtcgccggat gcggaaatgc tggcggacct cgacgccgag
     3121 cttgaatcga tcgacgaggc actcggcgcc ttcgagctgc gctcgctgct ccgcggcgag
     3181 gatgacttcc gcgatgcgca ggtcgagatc gcggccggcg ccggcggcac cgaagcgcag
     3241 gactgggccg agatgttgat gcgcatgtac acacgctggg cggagcgtcg cgggttcaag
     3301 gtcgaggtgc tcgacagaag cgagggcgaa gaggcgggaa tcaagggcgc cgtcctcgag
     3361 atcagtggcg atcacgcgta cggctttctc aagccggagg ccggtgttca ccgccttgtc
     3421 cgcatctcgc cattcgattc gaacgcgcgc cgtcatacga gcttcgcttc gatcttcgtg
     3481 tatccggtag tcaacgagga gatcaacatc gagatcaagg aagacgatct ccgcatcgac
     3541 gtttatcgcg catccggtgc gggtggccag cacgtcaaca agacgagctc ggccgtccgt
     3601 atcacgcaca ttccaactgg attggtgact gcctcgcagc aggagcgctc gcagtacaag
     3661 aacaaggcga ctgcactcaa gatgttgaag aacaaactgt accaggctga agttgcgcga
     3721 cgtgaagccg agaaggcgaa ggtcgatgcg tccaagacgt cggtgagctt cggcaatcag
     3781 acgcgcagct atgtgtttca accgtacacg atggtcaacg atcaccgcac ggagctcaag
     3841 attccggatg tgcagaaggt gatggacggc gggatcgatc cgttcatcga agcctatctg
     3901 aagatgcagg cagaggcggg gacgaccgga tcatgacgga cgaactgcac ttcctgatgg
     3961 cggcgcggcg cgagaagctg gatgcgatgc gcgcaagcgg cgtcgagccg ttcgcataca
     4021 gtttcgatcg taccgcgacc gcacagcacg cggtgtcgct tgcgccggaa gaccagtcgg
     4081 gcgagtcgtc ggaacgcgtg agtgtggcgg gccgaatcgt ctcgatgcgc gcgcatggca
     4141 agacagcgtt cgcccacctg gccgacgcaa ccggccgcgt tcaattgtac ttcaggcgcg
     4201 acgacctggg tgacgcgtat tcactgatcg acatgctgga cattggcgac gtgattggtg
     4261 tgagcggcgc ggtctttcgc acgcgcaccg gcgagccgac gattcgtgtg gctgcgttcg
     4321 aggtgctcgc caagtcgctc cgtccgctgc cgtttgccaa ggaggagact gcggctgacg
     4381 gatctgttgt gcggcacatg ggattcagcg atccggagca gcgattccgg cagcggtacg
     4441 ccgatcttgc ggtgaatccc gaagtgcgcg ccacgttcgt tgcgcgcgca cgcatgacgg
     4501 gcgccatccg atcgtttctc gacgcgcgtg gatacctcga agtggagacg ccggtgttgc
     4561 agccgttgta cggcggggcc gcagcgcgtc cgttcgtgac gcagcacaac gcgctcgaca
     4621 tgacgctcta cctccgcatt gccgacgagc tgtatctaaa gcggctgatc atcggtggaa
     4681 tggagcgcgt ctatgagatc ggacatgatt tcagaaacga gggcgtcgac cggactcaca
     4741 atccggaatt caccatgctc gagttctacg aggcgtacgc ggattacgaa gtgatgatgg
     4801 acgtagtcga gcggctcata gttgccgcgg ccgatgcggt gcgcggtgta gaatcgttcg
     4861 ccgatgcggt gccggtattc accactccgt tcaggcgcat cgagtggctc gcttcgatca
     4921 acgccggact tggcgctgac atactcgcgc tcgatcacga cggattgata cggcacgcca
     4981 cgcgactggg cgttccgcgc gcggcgacga tgagccggcc caagctgatg gacgagatct
     5041 tccagcttct ggtggagtcg aagatcaccg agccgacgtt cgtggtggct tatccagtcg
     5101 agctgtcgcc gctggccaag cccaagcgcg gcgatccgcg gctcaccgag cggttcgagt
     5161 tgtttgccaa tgggcgagaa ctcgcgaatg cattcagcga gctcaacgat ccgatcgacc
     5221 agcgcgagcg gttcgaggg
//
LOCUS       DATIMD010000372         4694 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1014902, whole genome shotgun sequence.
ACCESSION   DATIMD010000372 DATIMD010000000
VERSION     DATIMD010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4694
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1014902"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(206..988)
                     /locus_tag="VLI40_08290"
     CDS             complement(206..988)
                     /locus_tag="VLI40_08290"
                     /inference="COORDINATES: protein motif:HMM:NF019322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HSU97215.1"
                     /translation="MTQADIPRSTRAGRPAKLIAAAEPPRYQQVADDLIAGITSGMYP
                     VGGLLPTEMELCGQYGISRSTVREALRRLRDAGLISRRRRIGTEVVARTSPASYRQPT
                     NSISDLLQYADETQLQILSEKRITSDAALASFLECREGDAWLRIDSLRSIPNDPRPIC
                     MTTSYVDASLPDIYRNLENVTGPISAMLERVYGVHIARIEQSIQAIRLGKRQAKLLKA
                     DAGAPALRAVRRYYQANNALIELSSAIHPGDRFTYVTSLVRE"
     gene            complement(1085..1828)
                     /locus_tag="VLI40_08295"
     CDS             complement(1085..1828)
                     /locus_tag="VLI40_08295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HSU97216.1"
                     /translation="MIELRNVTKSYGDFRVLDGCSATVECGSVVVVCGPSGSGKSTLI
                     RCVNGLEAIDSGDIIVDGVSVTAPGTDLSALRARIGMVFQSFELFPHRTALDNVNLGQ
                     IKVLKRDRRAATERSMQLLERVGLANQAQKFPSALSGGQQQRIAIARALAMDPVAMLF
                     DEPTSALDPEMISEVLDVMVALAEDGMTMIVVTHEMAFARKVADRVLFIDHGRVVEDR
                     DTQSFFNEPHSERAKEFLSKILQHDFARA"
     gene            2125..3510
                     /locus_tag="VLI40_08300"
     CDS             2125..3510
                     /locus_tag="VLI40_08300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSU97217.1"
                     /translation="MRWRFSFSFVSCVLSGAQFLAAPVVAQAITPAVMKVAAQDAAQA
                     AVNPVRDTVPILLTPARVFDAPAGVTHEGWVVLVRGDRIAAVGPQASVQVPANARRID
                     LPNTTLLPGLIEGHSHLFLHPYAETSWSDQVLKEPLALRVARATVAARLTLQAGFTTE
                     RDLGTEGAGYADVGLKEAIDQGIIPGPRLMVATRAIVATGSYGPSGFDPRWTVPQGAE
                     ETDGVEGMIHTVRSQISHGATWIKVYADHEWGPNGETEPTFSLEELKAAVETARSSGR
                     YVASHARASEGVRRAILAGVTTVEHADSVTPEVFRLMAQHNVALCPTLSGTEVGFIRD
                     GWRKGIDPMPPEVALKHRTFREALKAGVTICSGSDVGAYPHGDNAREIELLVEYGMTP
                     VAALQAATVVNARVFHLADRGSIAPGLLADLVAINGDPTRNIHALHQVQFVMKGGEVV
                     PLAHASTTSHP"
     gene            3507..>4694
                     /locus_tag="VLI40_08305"
     CDS             3507..>4694
                     /locus_tag="VLI40_08305"
                     /inference="COORDINATES: protein motif:HMM:NF027806.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HSU97218.1"
                     /translation="MTKMRSIFRRTAFTLALACASASINIGAAHAQQPAAPPATASTT
                     AKDSLVIPAGAQMLPGVRFDPVAATNAYLATMPLAARERSDAYFEGGYWLLLWGTLVT
                     VLISILLLATGWSRAMRDRAARITHYRFLQTAIYWAQYIVLVTLISLPWDIYTGYFRE
                     HKYGLSTQNLGAWFTDAGKSLLLSIILGGIGIALLYMVVRRFPRSWAAWGTVVSIVFV
                     AIAILIEPVFITPIFNKVTLLKDQRVLAPVLRMAHANGLMTNDIYVVDESRESTRISA
                     NVSGMFGTERITMNDNLLNRASLPEIEAVLGHELGHYVLNHLYKLLTFFIIVIAVGFM
                     VLRHTFEWARMRWGEKWGVREISDPAGLPLVVLIITLFFFVITPVMNTEIRSTEQEAD
                     NFGL"
BASE COUNT          869 a         1451 c         1390 g          984 t
ORIGIN      
        1 catcctggct ccgggctatg actggcattt gtacggacaa aacgtgcctt atatgtacgt
       61 acctattgct tcccggtcaa gtgttccgtt ttgacgctat gcgggacgga ggggggacgg
      121 agtagggacg gactccgtgt gaattcgcta agtgcaacta agagcagggc cgcagcaggc
      181 tcctctgttg ccgttcttgc cgctgctatt cgcggaccag gctcgttaca taggtgaacc
      241 ggtcgcccgg atggatcgcg ctcgaaagct cgatgagggc gttgttcgcc tgatagtacc
      301 gtctcactgc gcgcagggca ggagcgccag catccgcctt gaggagcttc gcctgccgct
      361 ttccaaggcg gatcgcctgg atgctctgct caattctcgc gatatggaca ccgtaaacgc
      421 gctcgagcat cgccgagatc gggccggtca cgttttccag gttgcggtag atgtcgggga
      481 gagacgcatc tacgtacgag gtggtcatgc agatcggtcg cggatcgttg gggatactcc
      541 gcaggctgtc gatccggagc cacgcgtcac cctctcggca ttccagaaag ctggccagtg
      601 ctgcatccga cgttattcgc ttttccgaca ggatctggag ctgagtctca tcggcgtact
      661 gcagcaggtc gctgatcgag ttcgttggct ggcgatagct ggccggcgac gtccgcgcga
      721 cgacctccgt acctattctg cgccggcgcg agatgagacc ggcgtcgcgc agccgtcgta
      781 gcgcctcgcg caccgtggag cgacttattc cgtactgtcc gcacagctcc atctcggtgg
      841 gcagcagtcc gcccaccggg tacatcccgc tggtgattcc ggcgataagg tcgtcggcaa
      901 cctgttgata gcgaggtggc tctgccgcag caatcagctt cgccggtctt ccggcgcgcg
      961 tgcttcgcgg gatatctgct tgtgtcatgc tgacatgtcc gcgttgatgg gaattttgca
     1021 gattcgactt ccagcgaagc gatcctgagt tccgcctgcc ggcgctcgac ccgagcctgt
     1081 ccggttacgc tctggcgaag tcgtgttgca gaatcttcga gagaaactcc ttggctcgtt
     1141 cactgtgcgg ctcgttgaag aaggattgtg tgtcgcggtc ctctactact cgcccgtggt
     1201 caatgaacag tacgcgatcc gcgaccttgc gggcgaacgc catctcgtga gtcacgacga
     1261 tcatggtcat cccatcctct gccagtgcga ccatgacatc tagtacctcg ctgatcattt
     1321 ccggatcgag cgccgacgtg ggctcgtcga acaacattgc gactggatcc atcgcgagtg
     1381 cgcgcgcgat tgcgattctt tgttgctgtc cacccgacag cgccgaggga aacttttgcg
     1441 cctgattcgc cagtcccacc cgctccagca gttgcatgga tcgctccgtc gcagcgcggc
     1501 gatctcgttt caggactttt atctgtccca ggttcacatt gtcgagcgcg gttcggtgcg
     1561 gaaagagctc gaaggactgg aataccatcc cgattcgcgc cctgagcgcc gacagatcgg
     1621 tccctggtgc ggtcacggaa actccatcga ctatgatgtc gcccgaatca atcgcctcca
     1681 gaccgttcac gcagcggatc aatgtgctct tcccggatcc cgacggcccg cacaccacca
     1741 ccactgagcc gcattcgaca gtcgcggagc agccatcgag aacccggaag tccccgtacg
     1801 atttcgtgac gttcctcagt tcgatcatcc atgcccttga ttatcagaag cgaccgcaac
     1861 atcggttgtt atgacgacgc tgtcaagccg cgagaccggt cagtggacgt aacaagcgcg
     1921 ccagacgatt ggtgtagggg tcggatgtgt tccagggtgt ctttccggta tgagactgtc
     1981 gcgccttcaa cagtggagtg acaggtcacg tcgtgcgcgg cgcctggccg cgcgtgcggc
     2041 acgtacttga cagtccgcga gtcgatgagc gcaatttccc cctggcgatc tgccgtgcca
     2101 cgtcatctgt ccaggggaag ggtcatgcgc tggagattct cgttctcgtt cgtttcgtgt
     2161 gttttgtcgg gagctcagtt ccttgctgcg cccgtcgttg ctcaggccat aacgccggcc
     2221 gtaatgaagg tcgcagcgca ggatgcagcg caggctgccg taaatcctgt tcgcgacacg
     2281 gttccaatat tgctcactcc cgcgcgtgtt ttcgacgcgc cggctggtgt aacacatgaa
     2341 ggttgggtcg tgctcgtgcg cggtgatcgc atagcggcag tcggcccgca agcgtccgtt
     2401 caggtgccgg cgaacgcaag acgcatcgac ctcccgaata ccacccttct ccctggattg
     2461 atcgaaggcc actcgcacct gttcctgcac ccgtatgcgg aaacatcatg gagtgaccag
     2521 gtgctcaagg agccgctcgc gcttcgcgtc gcacgtgcga cggttgccgc gcgccttact
     2581 ctgcaagctg gcttcacgac tgaacgtgat ctcgggaccg agggtgccgg ttacgcggac
     2641 gtcggactca aggaagccat cgaccaggga attattccag gaccgcgcct catggtcgcg
     2701 actcgcgcaa ttgtcgcgac aggttcgtat ggtccatcgg gcttcgatcc gcgctggaca
     2761 gttccgcagg gcgccgaaga aaccgacggc gtcgagggaa tgatccacac ggtccgcagt
     2821 cagataagcc acggcgcaac gtggatcaag gtgtacgccg atcacgaatg gggcccgaac
     2881 ggcgaaactg agccgacatt ttcgctcgaa gaactcaagg ccgctgtgga gactgcgcgc
     2941 agctcgggcc gctatgtcgc gtcgcatgcg cgtgcgtccg aaggtgtccg tcgcgcgatt
     3001 ctcgcaggcg tcacaacggt ggagcacgca gattcggtca cgccggaagt ctttcggctg
     3061 atggcccaac acaacgttgc gctctgtccc acgctatccg ggacggaagt cggcttcatc
     3121 cgcgacggct ggagaaaggg gatcgatccg atgccgcccg aagtggcgct caagcatcgc
     3181 acctttcgcg aggcgctcaa ggctggtgtc acgatatgca gcggaagcga cgtgggcgcc
     3241 tacccgcacg gcgataatgc tcgcgagatc gagctgctcg ttgaatacgg catgacgccc
     3301 gtagcggccc tgcaggctgc gacggtcgtc aatgcgcgcg tgtttcatct cgctgaccgc
     3361 ggcagcatcg cccccggcct tcttgccgat ctcgtggcaa tcaatggaga cccgaccagg
     3421 aacattcatg cgctgcacca ggtgcagttc gtaatgaagg gcggcgaagt ggtaccgctg
     3481 gctcacgcca gtacaaccag tcatccatga caaaaatgcg ctcgatcttc cgtcgcactg
     3541 cattcacgct cgcgctcgcc tgcgcatctg catcgatcaa catcggcgcc gctcacgcgc
     3601 aacagcctgc cgcgccgcct gctaccgcat cgacaactgc aaaagattca ctggtgatcc
     3661 cggcgggcgc acagatgctt ccaggcgtac ggttcgatcc cgtcgccgcc accaacgcct
     3721 acctcgctac aatgccgctt gctgcacgcg agcgctccga tgcctacttc gagggcggct
     3781 actggctgct gctgtggggc acgctggtca cagtgctcat ctcgatcctg cttctcgcga
     3841 cgggctggtc acgggcaatg cgcgaccgcg cagcacgaat cacgcactat cgattcctgc
     3901 agactgcgat ctactgggcg caatacatcg tgctcgtcac gttgatctcg ctcccctggg
     3961 acatctacac agggtacttc cgggagcaca agtacggact gtccacgcaa aacctcggcg
     4021 cctggttcac cgacgccggt aagtcgctcc tgctctcgat catcctcggc ggcataggca
     4081 tagctctgct gtacatggtg gttcgccggt tcccgcgctc ctgggccgcg tggggaactg
     4141 tggtcagtat cgtgttcgtt gcgatcgcaa ttttgataga gccagtgttc atcaccccga
     4201 tcttcaacaa ggtgacgctg ctcaaggatc agcgcgtact ggcgcccgtc ctccgcatgg
     4261 cacatgcaaa cggtctcatg acgaatgaca tctacgtcgt cgacgagtcg cgcgagtcaa
     4321 cccgcatcag tgccaatgtg tccggaatgt tcggcaccga gcgcatcacg atgaacgaca
     4381 acctgctcaa tcgcgcatca ctgcccgaaa tcgaagctgt gctgggccac gagcttggcc
     4441 attacgtcct caatcatctc tacaagctgc tgacgttctt catcatcgtc atcgcggtcg
     4501 gattcatggt gctgcgtcac acattcgagt gggcgcgcat gcgatggggt gaaaaatggg
     4561 gcgttcgcga gatcagcgat ccagccggac tgccactcgt cgtactgatc attacgctct
     4621 ttttcttcgt gatcacgccg gtgatgaaca cggagatacg aagcaccgag caggaagccg
     4681 acaatttcgg tctc
//
LOCUS       DATIMD010000373         1733 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2456097, whole genome shotgun sequence.
ACCESSION   DATIMD010000373 DATIMD010000000
VERSION     DATIMD010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2456097"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            98..>1733
                     /locus_tag="VLI40_08310"
     CDS             98..>1733
                     /locus_tag="VLI40_08310"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HSU97219.1"
                     /translation="MNRFVTAFVIVMLAAASAGAQRATQPTRSTLPERAVRRDIPLQP
                     GIRRAYAQGTRDSTGAPGRNYWQQSVDYRINATLDAPGGVLHGSETVTLHNTTPNTLD
                     RIALRLYQNYFKATVQRNDYVTDITDGVVMEKLVVNGVPVSLTDSARYNVNGTVAAVT
                     PAAPIAPGATATIEAAWHFSVPRVDTLERGERMGRFGDYLYQIAQWYPQVAMYDDMRG
                     WDTDQYMGVGEFYNQFGSFDVNITVPGGWLVGATGDLQNPAEVLSQRTRDRLALAMRV
                     DTTVHVVTAAERGAGATGPGATLTWHFNAPHVNDFAFATSRDYVYDATHANIPGRSAI
                     PVNLFYLPQHTAYATNNTAQYGRFALEQHSRYVFPYEFSQGTIADGPETGMEYPMIIF
                     NGPGLGVTVHEFGHEWFPMTVGSDETRYGWMDEGFNEYIDAAATADFEHKPEVMAEDA
                     ESYRRIAGSELEAPMMWPTDFAGPNATMTTYVKAPVVLHALGGVVGDSAAHAAFVDYA
                     REWRFKHPSPYDFFMSMNRSLGRNLDWFWYPWFFTTY"
BASE COUNT          356 a          522 c          535 g          320 t
ORIGIN      
        1 accgcatccg tgcgatcgca ctagtgaccg ctgcgtgctg cagcggagtc gggcatcgct
       61 cgtaatttca gcatgtaacc gcaccgccac cgttcccatg aacagattcg tcacagcatt
      121 tgtcatagta atgttagccg cggcgtctgc cggtgcgcag cgcgcgacac agccaacgag
      181 atcgacgctg ccggagcgcg cggtacggcg cgacatcccc ttgcaacccg ggatccgccg
      241 agcgtacgcg caggggacgc gagattccac tggcgcgccc ggcaggaatt actggcaaca
      301 gagcgtcgat taccgcatca acgctacact ggatgctcca ggcggtgtgc tgcacggatc
      361 cgaaaccgtg acgttgcaca acacgacgcc gaatacactc gacagaattg cgctgagatt
      421 gtatcagaac tatttcaagg caaccgtcca gcgcaacgac tacgtcaccg acatcaccga
      481 cggcgtcgtc atggagaagc tggttgtcaa cggtgtaccg gtatcgttga ccgacagcgc
      541 gcgctacaac gtgaatggca ccgtcgcggc cgtcacacca gccgcgccaa tcgcgcccgg
      601 tgcaaccgcg acgatcgaag cggcatggca cttctccgtt ccgcgtgtgg acacactcga
      661 gcgcggcgag cgcatgggcc gctttggcga ttatctgtat cagatcgcgc agtggtatcc
      721 gcaggtcgcg atgtacgacg acatgcgcgg ctgggacacg gatcagtaca tgggcgtcgg
      781 cgagttctat aaccagttcg gcagcttcga tgtgaacatc accgttccgg gtggctggct
      841 cgtgggtgcg actggcgatc tgcagaatcc ggcggaagtg ttgtctcagc gcacgcgtga
      901 ccgtcttgcg cttgcgatgc gagtcgacac gacggtgcac gtggtgactg ccgccgagcg
      961 cggcgcgggc gcgactggac cgggcgcgac gctcacgtgg cacttcaatg cgccgcacgt
     1021 caacgacttc gcgtttgcaa cgtcgcgaga ttacgtgtac gacgcgaccc atgccaacat
     1081 accaggcagg agcgcgatac cggtcaacct gttctatcta ccgcagcaca cggcgtacgc
     1141 gacgaacaac acggcgcagt acggacgctt cgcgctggag cagcattcgc gctacgtatt
     1201 tccgtacgag ttctcacagg ggacgatcgc ggacggtccg gagaccggca tggaatatcc
     1261 gatgatcatc ttcaacggtc ccgggctcgg cgtgaccgtg cacgagttcg gacatgaatg
     1321 gtttccgatg acagtcggct cggacgaaac gcgctacggc tggatggacg agggattcaa
     1381 cgaatacatc gacgcggccg cgacagccga tttcgagcac aagccggaag tgatggctga
     1441 ggatgcagaa tcgtaccgtc gcattgccgg ctccgagctg gaagcgccaa tgatgtggcc
     1501 caccgacttc gccggcccga acgcgacgat gacgacttac gtcaaggcac cggtggtgtt
     1561 gcacgcactt ggcggagtgg tcggggattc cgccgcgcat gccgcgttcg tcgattatgc
     1621 aagagagtgg cgcttcaaac atccgtcgcc gtacgacttc ttcatgtcga tgaacagatc
     1681 gctgggtcgt aatctggact ggttctggta tccgtggttc ttcactacat ata
//
LOCUS       DATIMD010000374         3526 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1015530, whole genome shotgun sequence.
ACCESSION   DATIMD010000374 DATIMD010000000
VERSION     DATIMD010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3526
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1015530"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..545)
                     /locus_tag="VLI40_08315"
     CDS             complement(<1..545)
                     /locus_tag="VLI40_08315"
                     /inference="COORDINATES: protein motif:HMM:NF021357.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromate resistance protein ChrB
                     domain-containing protein"
                     /protein_id="HSU97220.1"
                     /translation="MHQLPPHPDYFRVKVWRRLKRIGAVALKNSVYVLPNGVEEREDF
                     EWLAREIVAGGGEATLCEANFLTATSDLELTASSTERRRRQRRRHRPRGALWVTRRGV
                     HVDRIASAWLIRRFIDPEADFKFVDPARYVPHEDELRFDMFDAEYTHIGAACTFEVLL
                     DTFALRNDVGLSSIAEIVHDI"
     gene            670..1605
                     /locus_tag="VLI40_08320"
     CDS             670..1605
                     /locus_tag="VLI40_08320"
                     /inference="COORDINATES: protein motif:HMM:NF019127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1259 domain-containing protein"
                     /protein_id="HSU97221.1"
                     /translation="MVQLIKGSYRVLTASGVAVVATVSSLAAVPCGAQATASLPSWTT
                     SVDAALGRHGTMNAGGVYKFGFPRSDIHADVEGVQIKPALALGSWVAFKAMASGGTMA
                     MGDLVLTEAEVAPVMQALQDSGVSQTALHNHLLHENPRVMYMHIMAMGDAARIARSIH
                     AALALSKTPLGTPAPPAAAAPVDLDTAGIARALGYSGKTNGGVYQVSVPRAEAIREHG
                     EVIPPAMGVATGMNFQPTGSGRAAISGDLVLLGGEVNPVIRALRSHGITVTAVHSHML
                     TEEPRLFFMHFWANDNAVALARGLRAALDATGTQH"
     gene            complement(1651..2124)
                     /locus_tag="VLI40_08325"
     CDS             complement(1651..2124)
                     /locus_tag="VLI40_08325"
                     /inference="COORDINATES: protein motif:HMM:NF021505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2231 domain-containing protein"
                     /protein_id="HSU97222.1"
                     /translation="MESRAKLVGHPIHPMLIVFPLGLLAMSLIFDLIQLGTHGGDWSH
                     VAFYMIGAGVIGGLVAAVFGLIDYTGIPAGTRAKHIAQLHGIGNVVVVLLFAASWYLR
                     LPDSAYPSGLAILLSIIGVLLALFTGWLGGELVDRLGIGVAPDANPDAPSSLKAR"
     gene            complement(2243..>3526)
                     /locus_tag="VLI40_08330"
     CDS             complement(2243..>3526)
                     /locus_tag="VLI40_08330"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HSU97223.1"
                     /translation="FRRRSLHGPIDGADVQDWPLSFEDLEPFYEEVEHDLQIAGPTHY
                     PWGTRRRRYPQREHDLNASAKILVMGCEKLGIPVAPAPIATLSAPHGDRPPCVYRGFC
                     NYGCTTNAKSSVLVTYIPRAIRAGAEIRPDAMAIRIEHDARGHATGVLYVRNGADGVQ
                     RQRAKNVVVACYAVETPRLLLNSTSALFPDGLANSSGCVGRYFMVHSGNQVFARFDER
                     INQYKAPPPGGSITEHFNRTMTDVDFICGYTIEVVGPHIGDFATRMTTARRLWGAALR
                     RGMLDYNYWSGLGIVGEVLPQERNHVELDTETDVHGLPISRVVFGYHENDRNLVKHAI
                     GQMTRIMEAAGGKDVWSAQRTAHLLGGCRMGVDARESVVDQDGRAHDVPNLWVCDGSL
                     FPTSLAVNPSLTIQAMASRTASRIRSLAARREIAL"
BASE COUNT          702 a         1083 c         1096 g          645 t
ORIGIN      
        1 tcgatgtcgt gcactatctc ggcgatcgag ctcaggccaa cgtcatttcg aagcgcgaat
       61 gtgtccagca gcacctcgaa cgtgcacgcg gctccaatat gtgtgtattc agcgtcgaac
      121 atgtcaaacc gcagctcgtc ttcatgcggc acgtaccgcg ccggatcgac aaacttgaag
      181 tcggcctccg gatcgatgaa acgccgaatg agccatgcgc tcgcaattcg atcgacatga
      241 acgccgcgtc tcgtgaccca gagtgctcca cgcggtcgat gtctgcgacg ctgtcttctc
      301 cggcgttcgg tcgacgacgc cgtcagttcg aggtcgctcg tcgcagtgag aaagttcgcc
      361 tcgcacagcg tagcctcgcc tccacccgca actatctccc gcgccagcca ctcgaagtcc
      421 tcgcgctcct ccaccccgtt cggcagaaca tagacggaat tcttgagcgc tacagccccg
      481 attctcttga gtcgccgcca caccttgacc cggaagtagt ccgggtgagg cggcagctgg
      541 tgcatgagaa gtagccaacg aggtcgggca gtcattggag gcggctggcg gattggctca
      601 gggcataata tgatacagtt gtatcataca gtcatggcgc cccacgcgcg aggaggacag
      661 gtgcaatcaa tggtgcagtt gatcaagggc tcgtaccgtg tactgacggc ttccggcgtg
      721 gccgtagtgg ccacagtgtc atcgttggcg gcggtccctt gcggagcgca ggcgacggct
      781 tcgctgccgt catggacaac ttccgtagat gcagcgctcg ggcgccacgg tacgatgaac
      841 gccggcggtg tctacaagtt cggcttcccg cgctccgaca tccacgcgga cgtcgaggga
      901 gtgcagatca aacccgcgct tgctctgggt tcatgggtgg cgttcaaggc gatggcatca
      961 ggcgggacga tggccatggg ggatctggtc ctgacggagg ctgaagtcgc accggtcatg
     1021 caggcactgc aggacagcgg tgtcagtcaa acggcattgc acaaccatct cctgcatgag
     1081 aatcctcgcg tgatgtacat gcacatcatg gcgatgggcg acgcagcgag gatcgcccgg
     1141 tccatccacg ccgcgctggc tctcagcaag acgccactcg gaacccccgc accgccggcc
     1201 gccgcggcgc cggtcgatct tgataccgcg gggattgcgc gtgcgctcgg ctattccggc
     1261 aagacgaacg gtggcgtata ccaggtcagt gttccgcgtg cggaagcgat ccgggaacat
     1321 ggagaggtaa ttcccccggc gatgggagtc gcgaccggca tgaactttca gcctacgggc
     1381 agcggccgag cggctatcag tggagacctg gtgctactgg gaggtgaagt caatcccgtg
     1441 attcgagcgc tcaggagtca cggcatcacg gtgacggccg tgcacagtca catgctgacg
     1501 gaggagccgc gcttgttctt catgcacttc tgggccaatg acaatgccgt ggcgctcgca
     1561 cgcggactgc gtgcggcact cgacgcgact ggcacgcaac actgaccgta tgcgtcgtgc
     1621 gcaactgact gcgcaaaccg tttgcgggga ctaccgcgct ttcagggagc tcggagcgtc
     1681 gggattcgcg tcgggagcga cgccgatacc aaggcgatcc accagctcgc caccaagcca
     1741 ccccgtgaac agggcgagga gaacgccgat gatcgagagc agtatcgcca gtcctgacgg
     1801 gtaggctgag tcggggagac ggagatacca gcttgctgcg aaaagaagaa cgaccacgac
     1861 gttgccgatc ccgtgcagct gagctatgtg cttcgcgcgg gtccccgcag gaatgccggt
     1921 gtagtctatc aggccaaaga cagcggccac caggccgccg atgacgccgg caccgatcat
     1981 gtagaaagcg acatgcgacc agtcaccgcc gtgtgttccc agctggatga ggtcgaagat
     2041 gagactcatc gccagcaacc ctaacgggaa gacgatgagc atcgggtgaa tcgggtggcc
     2101 gaccagcttc gctctgcttt ccatacgttg ctcctggttt atgaaagggc accgctgtcg
     2161 atcgaatcac gcgaacgcgg ttgcatgatc cggaccgtcg gccgcgatgt atgtcgtcga
     2221 gcaatcgtat ggtttgagta tgtcagagag ctatttcccg gcgagcggca agcgagcgga
     2281 tgcgcgacgc agtacgcgac gccatggcct gaatggtgag cgacggattc acggcaagcg
     2341 aggtcggaaa gagcgatccg tcacagaccc aaaggttggg tacgtcgtgc gcgcgtccgt
     2401 cctggtccac gaccgactcg cgcgcatcga cgcccatgcg acagccgcca agaaggtgag
     2461 cggttcgttg agctgaccaa acatcttttc cgccggctgc ttccatgatg cgggtcatct
     2521 ggccgatggc gtgcttcacc agattgcggt cgttctcgtg atagccgaac accacacgcg
     2581 aaattggcag gccatgcacg tcggtctccg tatcgagctc cacatgatta cgctcctgcg
     2641 gcagcacctc tccaacaatg cccagcccgg accagtagtt gtaatccagc atgccgcggc
     2701 gcagcgcagc accccacagc cgccgcgcgg tcgtcatgcg ggtcgcgaag tcgccgatgt
     2761 gtggaccaac cacttcgatc gtgtaaccgc agatgaagtc cacgtcggtc atggtgcggt
     2821 tgaagtgctc cgtgatcgag ccgcccggcg gaggagcctt gtactggttg atgcgttcgt
     2881 cgaaacgcgc gaatacctgg ttcccgctgt gcaccatgaa atagcggccc acgcaaccgg
     2941 agctgttcgc gaggccatcg ggaaacagcg cgctcgtgct gttgagcagc agacggggcg
     3001 tctcgacggc ataacacgcc acgacgacat tcttcgcgcg ctggcgttgc actccatccg
     3061 ctccgttccg aacgtacaac acaccagtcg catgaccgcg cgcgtcgtgc tcgatgcgaa
     3121 tcgccatagc atccggccga atttccgcgc cggcgcgaat cgcgcgcggg atgtacgtaa
     3181 cgagaaccga gctctttgcg ttggtcgtac aaccatagtt gcagaagcca cgatacacac
     3241 aaggcggacg gtcaccgtgc ggcgcactca gcgtcgctat cggtgcgggc gcaacgggaa
     3301 tcccgagctt ctcgcatccc atgacgagta tcttcgcgct tgcattcaga tcatgctcgc
     3361 gctgtggata gcgccgtctc cgcgtacccc acggatagtg cgtgggacct gcgatctgta
     3421 gatcgtgctc cacttcctca tagaatggct cgagatcctc gaacgagagc ggccagtcct
     3481 gcacatcggc accgtcgatc gggccgtgca ggcttctgcg acggaa
//
LOCUS       DATIMD010000375        10384 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2745268, whole genome shotgun sequence.
ACCESSION   DATIMD010000375 DATIMD010000000
VERSION     DATIMD010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 10384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10384
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2745268"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2294)
                     /locus_tag="VLI40_08335"
     CDS             complement(<1..2294)
                     /locus_tag="VLI40_08335"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12-dependent ribonucleotide reductase"
                     /protein_id="HSU97224.1"
                     /translation="MADANNQESLPDAQLNQNARTVLSKRYLIKDKSGTPTERPEDMF
                     WRVATVVAEADRRYGASAGAVHALAEQFYRLMTERRFEPNSPTLMNAGRPLGQLSACF
                     VLPVEDALSNGHNGIYDTLRSMALIHQSGGGTGFSFSRLRGKGSMVRSTTGVASGPVS
                     FMKLYDASTDAVKQGGTRRGANMGILRVDHPDILDFITCKEDLSQITNFNISVGITTA
                     FMKALKAGEMYDLIEPSTGKVAGRLDAGMVWDRMLDGAWRTGEPGCFFIDEAERYNPV
                     PHLGAYEATNPCGEQPLLPYDVCNLGSINIGFYVKDGVMDWDSMKRDIYLATRFLDNI
                     IDVNKYPLPEIDALSKRIRRIGFGVMGFADALVRLGIPYDSPEGVEFGRTLQEFVDTE
                     AKRESERLANERGPFPEWARSIFGPDETCARDANGERLRPKQLLRNCNVTTVAPTGTI
                     SIIAGCSSGIEPLFAVAFMRNQAGVMMPDVNEDFVAVAKREGWYSDDLIERIAKEGHI
                     HFNEVPEKWRRVFVTAHDITPEWHVRMQAAFQEHCDSAISKTTNFPHAATRDDVRAIY
                     ELAYDLKCKGVTVYRDGSRDNQVLSTGATAQASAARDEKTERREMGELQGTIAEMTAE
                     IERLKQSLYDAEAENLQRRVKRSRPDRLRGTTIRKETPLGTMFVNITEDEKGQPFEVF
                     INLGKAGGAAMADAEAMGRMISLALRSGIPLREVHKQLRGISSDRAVGLGPSKVLSVP
                     DAIGIALYEWWQDKQGVQQELLASG"
     gene            complement(2745..5744)
                     /locus_tag="VLI40_08340"
     CDS             complement(2745..5744)
                     /locus_tag="VLI40_08340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97225.1"
                     /translation="MPFIAGWRETVVRVIAGLLVSAVAFNGLAAQVPANERWRTIETP
                     HFRVHFTDPLEAEARHAASVAERAYANLATELVTPRGPVDIVVSDGTDASNGSATVIP
                     RPRVIIFARPPVDDPSLESYNDWTVLVLQHELTHIFHLDRSRGWWRAAQAVFGRNPVL
                     FPNYYTPSWLTEGLAVYYESRFTSGGRLHGSFESAVVRAAAVDHLAPSLSELSLATSR
                     FPYGESVYVYGSFVWDDIAREHGASAIPAFIERSSEETIPFFLDREAKRSFGETFTHS
                     WNEWRDSVLRSVNDSAALRMQSGPAPAAFASSRAIVIPNGGRDIVEPRWIGDSALVFA
                     ANNGRETPGLYRARLNEAPVRQARRNSLDVNDPSHNGLTVFSQDDYIDRYHVRGDLYA
                     IRGGVETRLTHGKRLSAPSVRADGEMVAVQTVPGTTRLVRVSGDGRHITPITTASLDT
                     QWAAPRWSPDGSRIVAVRIAGAPNEIVVLDSTGRVIHEPVRQSAVLRSPAWVDNGRSI
                     LFTSDSSGASQLSVVPADGEFASVTPVRLTAEPGGVYGVDAVNAGADSVRIATTALRG
                     DGYHVLVWTVSNAELASLSARGDSAPLRVPDVTPSADPRWRVTDDTSRSRSYSPWRTL
                     APAYWSPTFAQVGDGRGALIGALTGASDVIGRHSYVAQASVNTHNSNVDASLDYAYNR
                     WANPGLALSLEQSWTYANITGGGQKVGDLGERSRFVNVHATFSRPRVRTYSAITVGAE
                     LESDQYSSSPGDLLAKLDSFFSTTHNYPSLVAGVVFSSTQSPTLSISPEDGVTFAGSV
                     RQRWESSTGVAGRSAVAIGAAYKSLDLPGFAHHVIAIRAAIGAADHRSPSVYSAGGVS
                     GESFEIVPGITFGSSTRTFPARGFPAGSETGIDASSVSAEYRLPLIAPSRSLGLFPFF
                     LDRASLALFGDAARASCPSGATPACSPSSNDGPTLGSVGAELNLDSALQFDVPYRFRF
                     GLAHPVHGAAYAGASSVSLYATLGLAF"
     gene            complement(5746..7260)
                     /locus_tag="VLI40_08345"
     CDS             complement(5746..7260)
                     /locus_tag="VLI40_08345"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: protein motif:HMM:NF013670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HSU97226.1"
                     /translation="MHRAAPVPLTIARAPLPAPNPKLPPVPQVDGSLAIKVVYPSRNA
                     IIGSRDSNFVFGSVGNGDAGLTINGNLVPVWPNGAFLGWVPNPPADSQWYDLQAYTLR
                     DTVRLRFPVRTLAGIGPRPSAPPEVTLITPPVVAELRDDSLDRTVSDTDNVIIGRPTP
                     TGDYKWFLFPGTVVRVLEYRDDMARVQLDRGQEIWVQRRDVKPRRGTRATKAPRPLRV
                     THAALTATGASVKLQLRIASPPAYVVAEGERDLTLTLYNTTASAKLREPSDSLIASAT
                     QSRERTRTVYHFALTRPVYGYEALYDKGVLTLSIRRPPVVDPSEPLRGMTIVVDPGHP
                     PIGATGPTGLWEPVPTLAVGLRVRDLLEARGAHVVMTRTGAGPVPLGDRPIFARRANA
                     NAFVSIHLNADADGQNPFRDNGTGTYYFHPQSRLLARFVEDSLVPQLGLRDRGIFYQN
                     LAVCRPTWFPAVLAEGLFIIMPDQESAIKTPEYQEAYARGVVGGLEKFFATFER"
     gene            7442..8380
                     /locus_tag="VLI40_08350"
     CDS             7442..8380
                     /locus_tag="VLI40_08350"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein
                     phosphatase"
                     /protein_id="HSU97227.1"
                     /translation="MPDREIPDPPETPRGLVVVAGGRTDVGRVRNLNEDSYLVAALGR
                     DAVVMKGATTTLTVPHTPALLVVADGVGGAASGEIASLMATDTMFIELRRRYESEWPR
                     TPAGVEAALRNAISAANHVIFTYSSGNPQHRGMATTATLAVVHQSTITIAQVGDSRAY
                     LVRGGEARQITKDQSLIQRLIDAGEMTEGEAAHSDRRNIILQALGSEATVIPDIYREQ
                     AEVGDVLVLCSDGLSNLVSAHDIARIALADDNMETVCERLVSCANSRGGHDNITVVAA
                     RFEPADPDEPPPPPPPPTTRESTSPGLSDRVRRWLR"
     gene            complement(8322..9479)
                     /locus_tag="VLI40_08355"
     CDS             complement(8322..9479)
                     /locus_tag="VLI40_08355"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: protein motif:HMM:NF007148.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HSU97228.1"
                     /translation="MSEVDGAARGAADGVYVGLMSGTSLDGISAAVVRFNSVGAGIEH
                     ELLAFNSSAYTAEQRDRLASAMNRGTAEDYCALSFDLGEWLAAAALSVIRSAHLNAHI
                     DTREIRAIASHGQTIWHSPRRATWQSGESAVIAERTGVDVVSDFRVRDVAAGGEGAPL
                     VPIADALLYSASTEWRLLQNIGGIGNVTIVPPDGDVTRVRAFDTGPGVVLIDHLVRKL
                     YPGVRFDEGGAIARSGSARADVVAALLRDPYFMQPPPKSTGREYFGAAFADRMQSMVN
                     GPDADVIATAVEFTAESIADAVRRYVHEQPGEMVVSGGGARNGALMAALRRAMQPVRV
                     TSFDDLYYDGEAKEAVAFALLGYLHLARLPGNVIGATGARGPRVLGKLTPA"
     gene            complement(9472..>10384)
                     /gene="murQ"
                     /locus_tag="VLI40_08360"
     CDS             complement(9472..>10384)
                     /gene="murQ"
                     /locus_tag="VLI40_08360"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016835 - carbon-oxygen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HSU97229.1"
                     /translation="DHRTTEQRNPRTANIDLASAGEIVALMNREDATIAGVVAGQSEA
                     IARAVDTAASTFRAGGRLFYVGAGTSGRLGVLDASECPPTFGTDPEMVQGIIAGGAPA
                     LTRSQEGAEDSPATGAKEMDTRDVGPLDFVVGIAASGTTPFVHGAIHRARELGAHTAI
                     VACTQPPDSLLADCDIAIVPVVGPEVVTGSTRLKAGTATKLVLNTITTGAMILLGKTY
                     GNLMVDMRATNAKLTDRAERIMIEVTGVSRERAREMLAAAGGLVKTAIVMQMMDVDRA
                     AAERMLADHGGVIRRVVPGAPPPVANE"
BASE COUNT         1907 a         3319 c         3313 g         1845 t
ORIGIN      
        1 ccgctcgcca gcagctcctg ctgcacgccc tgcttgtcct gccaccactc gtagagcgcg
       61 atcccgatcg cgtccggcac cgagaggacc ttgctcgggc cgaggccgac cgcgcggtcc
      121 gacgagatgc cgcgcagctg cttgtgcacc tcgcgcagcg gaatgccgga gcgaagcgcg
      181 agcgagatca tgcggcccat cgcttcggcg tcggccatcg ctgcaccgcc cgccttgccg
      241 aggttgatga agacttcgaa cggctgaccc ttttcgtctt cagtgatgtt gacgaacatg
      301 gtgccgagcg gcgtttcctt gcgaatcgtc gtaccgcgca ggcgatccgg gcgcgagcgc
      361 ttgacgcggc gctgaaggtt ctcagcctcc gcatcgtaca acgactgctt caaccgctcg
      421 atctccgccg tcatctcggc gattgtcccc tgcagctcgc ccatctcgcg gcgctcggtc
      481 ttctcgtcgc gcgccgcgct ggcctgagcc gttgcgccgg tcgagagaac ctggttgtca
      541 cgcgagccgt cgcggtacac cgtgacgccc ttgcacttga gatcatacgc aagctcgtag
      601 atcgcacgaa cgtcgtcgcg cgtcgcagcg tgcgggaagt tggtcgtctt cgagatcgca
      661 gaatcgcagt gctcctgaaa tgcggcctgc atgcgaacgt gccactcagg ggtgatgtcg
      721 tgcgcggtaa cgaatacgcg gcgccacttc tcgggcactt cgttgaagtg gatatgccct
      781 tccttcgcga tgcgctcgat caggtcgtcg gagtaccacc cttcccgctt cgcgactgcg
      841 acaaaatcct cgttgacgtc cggcatcatc acgccagcct ggttgcgcat gaacgcaacg
      901 gcgaacagcg gctcgattcc tgatgagcaa ccggcgatga tggagatggt gccggtcgga
      961 gcgactgtcg taacgttgca gttgcgcagc agctgcttgg ggcggagacg ctcgccattt
     1021 gcatcccgcg cgcacgtttc atcgggaccg aaaatcgagc gtgcccattc cgggaacggc
     1081 ccgcgctcgt tggcaagccg ctcgctctcg cgcttggctt cggtgtcgac gaactcctgc
     1141 agcgtgcggc cgaactccac gccttcgggc gaatcgtacg gaatgccgag ccgcacgagc
     1201 gcgtcggcga agcccatcac accgaatccg atgcggcgga tgcgcttgga cagcgcgtcg
     1261 atctccggaa gcggatactt gttgacgtcg atgatgttgt cgaggaatcg cgtcgcgaga
     1321 tagatgtcgc gcttcatcga atcccagtcc atcacaccgt ccttcacata gaagccgatg
     1381 ttgatggagc ccaggttgca gacgtcgtac ggcagcaagg gctgttcacc gcagggattg
     1441 gtcgcctcgt acgcaccgag atgtggcacc ggattgtagc gctctgcctc gtcgatgaag
     1501 aagcagccgg gctcacccgt gcgccacgca ccatcgagca tcctgtccca caccataccg
     1561 gcgtcgagcc ggccggcgac cttgcccgtg gagggctcga tcaggtcgta catctcgccc
     1621 gccttgagcg ccttcatgaa ggccgtcgtt atgccgacgg agatgttgaa gttggtgatc
     1681 tgggagagat cttccttgca cgtaatgaag tccagaatat ccggatgatc gacccgcagt
     1741 atccccatat tcgcaccgcg acgcgtccca ccctgcttga ctgcatccgt cgaggcgtcg
     1801 tacagcttca tgaacgagac gggacccgag gcaactccgg tcgtcgagcg gaccatggag
     1861 cccttgccgc gcagacgcga gaacgagaag ccggttccgc ctccgctctg gtgaatgagc
     1921 gccatcgacc gcagcgtgtc gtagatgccg ttgtggccgt tggacagcgc gtcctcgacc
     1981 ggcaacacga aacaggccga aagctgcccc agcgggcgcc ctgcgttcat cagcgtgggt
     2041 gaattgggct cgaagcgacg ctcggtcatc agacgataga actgctcggc gagcgcgtgc
     2101 accgctcccg cgctcgcgcc ataccggcgg tcagcttccg ccacgaccgt ggccacacgc
     2161 cagaacatgt cctcgggacg ctccgtcgga gtgcccgatt tgtccttgat cagatagcgc
     2221 ttggacaaca ccgtccgggc gttctgattc agctgcgcgt cgggcagcga ctcctgatta
     2281 tttgcgtcgg ccatctctat tctctctgaa actgtgctga ttgttcgtca ggcggaatgt
     2341 accaccaaac gtgacttcat aacttccatg tggagaccaa tcggcgcgct gtatttgcgc
     2401 catcaggtca ggggtcgtga tactacctcg gtacgtgttt gcgcgccagt gtattgttaa
     2461 gtcgttgcag cacaacgagt tgggaatgga cagtcacgaa catctgtgac tgttcgtttt
     2521 tgttcattgc ccattaacat tgcctggctg atcgaataat tgtgatcata ttctgataca
     2581 ccgtgttaac ccgttggtgc gcaatcactt agctcggaca gaactcggcg gaggatcctt
     2641 ttgtgatccg ctggcaatcg attccgtgac tggcgagctt cggggttgct tggaaacacg
     2701 tgaccgcaga gcccgtgccc cacacgacta tttgcccgaa atgatcagaa ggcaagcccg
     2761 agtgtcgcat agaggctgac gctggatgcg cccgcgtacg cagcgccgtg caccggatgc
     2821 gcgagaccga atcggaaccg gtacggcaca tcgaattgca acgccgaatc gaggttgagt
     2881 tcggccccga ccgaccccag cgtcggacca tcgttggacg atggcgagca ggccggcgtc
     2941 gcaccggagg gacacgacgc gcgcgcggcg tcaccaaaca atgccagcga ggcgcggtcc
     3001 aggaagaacg ggaacaggcc cagcgagcgc gacggcgcga tcagcggaag acggtattca
     3061 gcgctcaccg acgacgcatc gattccggtc tcgctgcctg cgggaaagcc gcgcgccgga
     3121 aaggtgcgcg tgctgctgcc gaacgtgatt cccggcacta tctcgaacga ctccccgctc
     3181 acaccgccgg cagagtaaac gctcggcgac ctgtgatcgg cagctccgat ggcggcccgt
     3241 atggcgatta catgatgcgc gaagcccggc agatccagcg acttgtacgc ggcgccgatc
     3301 gccactgcac tccgccccgc aacaccggtc gacgattccc agcgctgtcg cacggagccg
     3361 gcgaacgtca cgccatcctc gggcgagatg ctgagcgttg gcgattgcgt gctggagaac
     3421 acgacgcccg cgacgagcga cggatagttg tgcgtcgtcg agaaaaacga atccagcttt
     3481 gccagcaaat cacccgggct ggatgagtac tggtcactct cgagctccgc gccaacagtg
     3541 atcgcggagt aggttcgaac gcgggggcgc gagaaggtcg cgtgcacgtt gacaaagcgg
     3601 ctgcgctcgc cgagatctcc gaccttctga ccaccgccgg tgatgttggc gtacgtccag
     3661 gattgctcca acgacaacgc aagccccggg ttggcccatc tgttgtatgc gtaatcgagc
     3721 gatgcgtcga cgttgctgtt gtgagtgttg acggatgcct gcgcaacgta cgagtgacga
     3781 ccgatcacgt cagatgcacc ggtgagcgca cctatgagtg caccgcgacc atcacctacc
     3841 tgcgcgaagg tcggcgacca gtacgcaggt gcaagcgtgc gccacggcga atacgatcgc
     3901 gaccggctgg tatcgtccgt cacccgccaa cgcggatcgg ctgacggcgt cacgtcaggc
     3961 acacgcaacg gcgcgctgtc gccgcgtgcg ctgagcgatg ccagctcggc attgctgacg
     4021 gtccacacca gcacgtgata gccatcgccg cggagtgcgg ttgtcgcgat ccgcacagaa
     4081 tcggcgccag cgttcaccgc atcgactcca tacacgccgc cgggctccgc ggtgagacgc
     4141 accggcgtca cgctggcaaa ctctccgtcg gcggggacga ccgatagctg cgaggcgcca
     4201 ctcgagtcgg atgtgaagag aatcgatcgg ccgttatcca cccacgccgg cgacctgagc
     4261 accgcgctct gtcgcacggg ctcatgaatt acgcgtccgg tgctgtcgag cacgactatc
     4321 tcgttcggcg cgcccgcgat cctgaccgcg acaatccgcg atccgtccgg agaccatcgt
     4381 ggcgcggccc actgtgtgtc gagcgacgcc gtggtgattg gcgtgatgtg tcttccatcg
     4441 cccgacacgc gcacgagacg cgtcgtgccc ggcactgtct gcacagcaac catctcgcca
     4501 tctgctcgca cgctcggcgc gctcagacgc ttgccatgcg tcagccgcgt ctcgacacca
     4561 ccgcggattg cgtacagatc gccgcgcaca tggtagcgat cgatgtagtc atcctgcgag
     4621 aacaccgtga ggccgttgtg cgacggatcg ttgacatcga gggaattgcg ccgagcctgg
     4681 cgtactggcg cttcgttcag gcgagcacgg tacagtccgg gcgtttcgcg gccattattt
     4741 gcagcgaaca cgagcgccga atcaccgatc cagcggggct cgacaatgtc gcggccaccg
     4801 ttggggatca cgattgcgcg cgacgatgcg aacgctgccg gagcgggccc ggattgcatg
     4861 cgcagcgctg ccgaatcgtt gacggaccgc agaaccgaat cgcgccactc gttccacgag
     4921 tgcgtgaagg tctcgccaaa cgaccgcttc gcttcacggt cgaggaaaaa cggaatcgtt
     4981 tcctcactcg agcgctcgat gaaggcaggt atcgccgatg caccgtgctc gcgcgcgatg
     5041 tcatcccata cgaacgatcc gtagacgtac accgattccc cgtacgggaa ccgcgaagtc
     5101 gcaagtgaca gctcgctcag cgacggagcg aggtgatcta cggcagccgc gcgtacgacg
     5161 gcgctctcga agcttccgtg cagcctgccg ccgctcgtga agcgcgattc gtagtacacg
     5221 gcgagccctt cggtcaacca ggagggcgtg tagtaattcg gaaagagaac tggattgcgt
     5281 ccgaacaccg cctgcgctgc gcgccaccag ccgcgactgc gatcgagatg aaagatgtgc
     5341 gtcagctcgt gctgcaatac gagcacggtc cagtcgttgt agctctccag cgacgggtcg
     5401 tcgaccggcg gacgcgcaaa tatgatcacg cgtgggcgcg gaatcacggt agccgacccg
     5461 ttggatgcgt cggtgccgtc gctcacgacg atgtccacgg gaccgcgcgg tgtcacgagc
     5521 tccgtcgcca gattcgcgta cgcacgctcg gcgaccgacg cggcatggcg cgcttccgct
     5581 tccagcggat ccgtgaagtg aactctgaag tgcggcgtct cgatggtccg ccaccgctcg
     5641 ttcgcgggca cctgagcggc aagtccattg aaggcaaccg cggagacgag cagtccggcg
     5701 attacgcgga cgacagtctc ccgccatccc gcgatgaagg gcacgctagc gttcgaaggt
     5761 tgcgaagaac ttctccaatc cgccgacgac gccgcgtgca taggcttcct gatattccgg
     5821 agtttttatc gctgattcct gatcgggcat gatgatgaac agcccctctg caaggacggc
     5881 ggggaaccag gttggacgac acacagcaag gttctgatag aatatcccac gatcgcgcag
     5941 gccgagctga ggcaccagag aatcctcgac gaagcgcgca agcaatctgg attgcggatg
     6001 aaaataatac gttcccgtac cgttgtcgcg gaatggattc tggccatccg cgtcggcgtt
     6061 gaggtgaatg gagacaaaag cgttggcatt cgcgcgccgc gcgaagatgg ggcgatcgcc
     6121 aagcgggacc ggaccggcac ccgttctggt catgacgacg tgcgcgccgc gcgcttcgag
     6181 cagatcgcga acacgcagtc caacggccag ggtcgggacg ggctcccaga gaccggtcgg
     6241 ccctgtagcg ccgatcggcg gatggcccgg gtcgacgacg atcgtcatgc cgcgaagcgg
     6301 ctcggacgga tcgacgacag gcgggcgcct gatgctgagc gtgagaacgc ccttgtcgta
     6361 cagcgcctcg tagccgtaca ctggccgcgt gagcgcgaag tggtacacgg tacgtgttcg
     6421 ttcccgcgat tgagtagcgc tggcgatgag agaatccgac ggctcacgga gctttgctga
     6481 tgcagtcgta ttgtaaagtg taagcgtgag atcgcgttcg ccttccgcta cgacgtacgc
     6541 aggcggtgac gcgatacgca gttgcagctt gacgctcgcg ccggtcgcgg tgagtgccgc
     6601 atgtgtaaca cgcagaggtc gcggtgcttt cgtcgctcgc gttccgcgac gcggcttgac
     6661 gtcgcgtcgt tgcacccaga tttcctgtcc gcggtccagc tgcacacgcg ccatgtcgtc
     6721 gcgatattcg agaacgcgca cgactgttcc cgggaacagg aaccacttgt aatcgcctgt
     6781 cggcgtcggc cgcccgatga tgacgttgtc cgtgtcgctc accgttctgt ccagcgagtc
     6841 gtcgcgcaac tcggcgacca cgggaggggt gatcagtgtg acctcgggtg gtgccgacgg
     6901 gcgggggccg ataccggcca gcgtacgcac cggaaagcgg agccgcacgg tgtcgcgaag
     6961 cgtgtacgcc tggagatcgt accactgcga atcagcgggt ggattcggaa cccatccgag
     7021 aaaggctccg tttggccata cggggaccag attgccgttg atggtcaggc cggcgtcgcc
     7081 attcccgaca gacccgaaga cgaaattcga atcgcgcgac ccgatgatgg cgttgcgcga
     7141 cggatatacg accttgattg cgagcgaacc gtcgacttgg gggaccggcg ggagcttggg
     7201 gttgggagcc ggcagcggtg cgcgtgcgat ggtcaacggg accggcgctg cgcggtgcac
     7261 cggaggtgga accggtgcgg gggctggggc tggcggcgca ctcgagcaag ccaacccaag
     7321 ggccgcggcg gccagcgccg ccccggggta gaaacgtcct gatgtcgcgt gacggcgggg
     7381 catgtgacaa aggtagcggg gcagacggtg acggtcagca tccgggggtg tattcttccc
     7441 catgcctgat cgtgaaattc ctgatccacc ggagacgccg cgcggcctcg ttgtcgtagc
     7501 gggcggccgc accgacgttg ggcgggttcg gaatctcaac gaagattcct acctcgtggc
     7561 ggcgctggga cgcgatgccg tggtgatgaa gggagcgacc acgacgctga ccgttccgca
     7621 cacgccggct ctactggtag ttgccgacgg tgtcggcggc gccgcgtcgg gcgagatcgc
     7681 gagcctgatg gcgaccgaca cgatgttcat cgagctgcgc cgcagatacg agtccgagtg
     7741 gccgcgcacg ccggccggcg tcgaggcggc gctgcgcaac gcgatctcgg cggcaaacca
     7801 tgtgatcttc acctattcat cgggcaatcc acagcatcgg gggatggcca caaccgcgac
     7861 gctcgcggtt gtccatcaat ccacgatcac gatcgcacag gtaggtgaca gccgcgcgta
     7921 tctcgtgcgc ggcggcgagg cgcgtcagat caccaaggat caatcactga ttcaacgtct
     7981 gatcgacgca ggcgagatga ccgagggcga ggccgcgcac agcgaccgcc gcaacataat
     8041 tctgcaggcg ctgggctccg aggcgacggt catccctgat atttatcggg agcaggccga
     8101 ggtcggcgac gtgttggtgc tgtgcagtga tgggctgtcc aatctcgtga gcgcacatga
     8161 catagcacgc atcgcgctcg ccgatgacaa catggagacg gtgtgcgagc gcctggtctc
     8221 gtgcgccaac tcgcgcggcg gtcacgacaa cattacagtc gtggcagcgc gcttcgagcc
     8281 agcggatccc gacgagccgc caccaccacc accaccgcca actacgcggg agtcaacttc
     8341 cccaggactc tcggaccgcg tgcgccggtg gctccgatga cgttgccggg caggcgcgcg
     8401 agatgcaggt atcccagcag cgcgaacgct accgcctcct tcgcctcgcc atcgtagtac
     8461 agatcgtcga acgatgtgac acgcacaggt tgcatcgcgc ggcggagcgc ggccatcaat
     8521 gcaccgttgc gagcgccgcc gcctgacacc accatctcgc caggctgctc gtgaacgtag
     8581 cgacgcacgg catccgcaat cgattcggcc gtgaattcga cagcggtcgc aattacatcc
     8641 gcatcgggtc cattcaccat tgattgcatg cggtcggcga atgccgcgcc gaagtattcg
     8701 cggccggtcg atttgggcgg tggctgcatg aagtacggat cacgcagaag cgccgcgacc
     8761 acgtcggcgc gcgcacttcc ggatcgcgcg atggcaccac cctcatcgaa gcgaacgccg
     8821 ggatacaact tgcgcacgag atggtcgatc aacaccactc cgggccccgt gtcgaacgcg
     8881 cgcacgcgtg taacgtcccc gtcgggcggg acgatcgtca cgtttccgat gccgccgatg
     8941 ttctggagca ggcgccactc ggtgctggcc gagtacagca acgcgtcggc gatcggaacg
     9001 agcggtgctc cctcgccgcc tgccgcgacg tcgcgaacac ggaagtccga tacgacgtcc
     9061 acaccggtgc gctcggcaat cactgcggat tcacctgact gccacgtcgc gcgacgcggc
     9121 gagtgccaga tggtctggcc gtgcgacgcg atcgcgcgga tttcgcgcgt gtcgatgtgc
     9181 gcattaaggt gtgcgctccg aatcaccgaa agtgcagcag ccgcaagcca ctctcccaga
     9241 tcgaacgaca gcgcgcagta gtcttcggcg gtcccgcgat tcatggccga tgcgagtctg
     9301 tcgcgctgct cggcagtata cgcgctgctg ttgaacgcca gcagctcgtg ttcgattccc
     9361 gcgccgacgc tgttgaagcg tacgacggct gcggagatgc cgtccagcga cgtacccgac
     9421 atcaggccga cgtagacacc gtccgcggcg ccacgcgcag ctccatccac ttcactcatt
     9481 cgcaacgggc ggcggcgcac ctggaacaac ccgccttatc acgccgccgt gatcggccag
     9541 catgcgttcc gccgcggcac gatcgacgtc catcatctgc atcacgatcg cggtcttgac
     9601 gagtccgccc gctgccgcga gcatctcccg cgcgcgctca cgcgagacgc ccgtcacctc
     9661 gatcatgatt cgctcggcgc gatccgtaag cttggcgttg gtcgcgcgca tgtcgaccat
     9721 cagattgccg taggtcttgc cgagtagaat catcgcgccg gtggtgatcg tgttgagtac
     9781 gagcttggtc gccgttcccg ccttgaggcg cgtggacccg gtaacgactt cggggccgac
     9841 aaccggcacg atcgcaatgt cgcaatccgc cagcagcgaa tccggcggct gagtgcacgc
     9901 aacgattgcc gtgtgtgcac ccaactcgcg cgcgcggtgg atcgcaccgt gtacgaacgg
     9961 tgtggttccc gatgccgcga tgccgacgac gaagtcgagc gggccgacgt cccgcgtgtc
    10021 catctccttc gcacctgtcg cgggactgtc ttcggcgccc tcctgggagc gggtaagcgc
    10081 cggcgcgccg cccgcgatga tcccctgcac catctcggga tcggttccaa atgtcggggg
    10141 acactcgctc gcatccagta cgccgaggcg gccggaagtg ccggcgccga cgtagaagag
    10201 acgaccgcca gcgcggaatg tcgatgctgc ggtatctact gcgcgcgcga ttgcttcgct
    10261 ctggcccgcc accacccccg cgatcgtcgc gtcttcacgg ttcatcagcg caactatctc
    10321 tcccgcagag gcgagatcga tgttcgcggt tcgggggttg cgctgctcgg ttgttctgtg
    10381 gtct
//
LOCUS       DATIMD010000376         4649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2745832, whole genome shotgun sequence.
ACCESSION   DATIMD010000376 DATIMD010000000
VERSION     DATIMD010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4649
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2745832"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            93..917
                     /locus_tag="VLI40_08365"
     CDS             93..917
                     /locus_tag="VLI40_08365"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HSU97230.1"
                     /translation="MLKFLRHGVAIALLLILGIAVAVLLSVKLLQDTAELRFERDVNR
                     MVFNDNLDLLSALRAHAGIETDSMRKLVEAPAPNANSPYIVISIADHRLWYKQGDSVL
                     FTAPVATASGKELVGGSGGQHWRFETPRGRLVVQAKDSNPAWVPPDWHYVEQARARGV
                     GLVHLERGQNYAGYTVQGSNVIMPNGQPAPPPKEGHELVANGNLIVPPFGTVQRRYMG
                     TLGTRRLDLGDGYGIHGTDEPESVGHSVSHGCVRMLNQDVEKLYPMVAIGTPVFIY"
     gene            969..1406
                     /locus_tag="VLI40_08370"
     CDS             969..1406
                     /locus_tag="VLI40_08370"
                     /inference="COORDINATES: protein motif:HMM:NF018508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HSU97231.1"
                     /translation="METTIPRSRRRPRRSAARPSTGRKRTVIDAVRELPNFLRLLYGL
                     ITDPRVELLDKLLVAGAVAYVMIPEDVFPDFIPLIGEVDDVFVLVLAIRQLMKSAGRE
                     VILEHWMGDPEELDELNLERVLGAASFFLPRRMRRRLRTIGRV"
     gene            1481..2968
                     /gene="guaB"
                     /locus_tag="VLI40_08375"
     CDS             1481..2968
                     /gene="guaB"
                     /locus_tag="VLI40_08375"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HSU97232.1"
                     /translation="MSIRQDEGLPSGYARIRSEPALTFDDVLLLPAHSLVHPRDVNTS
                     SRFTRGITLNVPLVSAAMDTVTESEMAIVMARAGGIGVVHKNMSIDRQAAEVDRVKRS
                     ESGMILDPITLSPSASLREAVALMNRFKISGVPIVDGGRLVGIITNRDLQFESNLDRP
                     LQDAMTKKNLVTAPVGTTLDEAEQILGAHRIEKLPVVDQNGNLRGLITVKDIHKRREF
                     PNANKDQHGRLRVAAAIGANNYEARAAALVDAGVDVLIIDTAHGHSEAVLQATGDVRE
                     RFPDVQLVAGNVATRAGARALAERGVDAIKVGVGPGSICTTRVVTGIGVPQLTAVLDA
                     VDGAGDVPIIADGGIKYSGDIVKALSAGASSVMMGSMLAGTEESPGESILMEGRRFKM
                     IRGMGSLAAMQDGSADRYFQEGEMSAKKLVPEGIEGRVPYKGPAVDVLFQMVGGLRAG
                     MGYAGCGTIDELRTKTEFVRITAAGLRESHPHDVVITREAPNYSV"
     gene            3111..>4649
                     /locus_tag="VLI40_08380"
     CDS             3111..>4649
                     /locus_tag="VLI40_08380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSU97233.1"
                     /translation="MPPRLFACVPPDAGTRRGDYMGLGSRKSIALLQAEASGEGEERT
                     LRRALGALNLTTLGIGAIIGAGIFVLTGTAAAQHAGPGVVYSFILAGIGCLFAGLCYA
                     EFAAMIPIAGSAYTYGYATLGEFIAWIIGWDLILEYLFGAATVAVGWSGYFTAFMNEI
                     GLHIPYQYAQAPLRVVGTHHLVQSTLCISPATNQIVTDTLATCAPGLTAVQGVINVPA
                     IVLTLLMTALLVVGIKESANFNNIIVIVKVAIVLLVIAFGFAYVNKANWHPFIPANTG
                     HFGDFGWSGVARAAGVVFFSYIGFDAVSTAAQEAKNPQRDMPIGILASLAICTVLYIL
                     MSLVMTGLANYKTLDVPHPVFVAIAAAGPALAWMRPIVNIGAIAGLASVVLVMLMGQP
                     RIFFSMARDGLLPPVFGKVHPKFQTPYVTTILTGVVAAVIAGYFPIGLLGELVSIGTL
                     LAFVIVCAGVIVLRYRQPNLERPFRTPLVPLVPILGIISCGALMASLPVDTWIRLIVW
                     MALGL"
BASE COUNT          854 a         1368 c         1488 g          939 t
ORIGIN      
        1 gcagtggcgg ccggcaacgt gcgcgtcgac gcggctgatc ttcgcgcgat tctgccgaac
       61 gtcagtgcgg gaatgagtgt gtacttctac tgatgctgaa attcctgcga cacggggtcg
      121 ccattgcgtt gctgctgata ctgggcattg ccgtcgccgt tttgttgagc gtcaagctgc
      181 tgcaggacac tgcggagctc cggttcgagc gtgacgtgaa ccgcatggtg ttcaacgaca
      241 atctcgacct gctgagcgcg ctgcgggcgc acgcgggaat cgaaaccgac agcatgcgaa
      301 agctcgtcga agcacccgca cccaacgcga attcgccgta catcgtcatc agcatcgccg
      361 accaccggtt gtggtacaag caaggtgaca gtgtgttgtt cacggcgccg gtcgcaactg
      421 cgagtggaaa ggagctggtg ggcggcagcg gcggccagca ctggcgcttc gagacgccgc
      481 gcggcaggct ggtggtgcag gcgaaggact ccaatccggc ctgggttccg cccgactggc
      541 attacgtgga acaggcgcgg gcgcgtggag tggggttggt gcacctcgag cgcgggcaga
      601 attatgccgg ctacacggtg caggggtcga acgtgatcat gccgaacggc cagcccgcgc
      661 caccgcccaa ggaaggccac gaactcgtcg ccaacgggaa cctgatcgtc ccgccgttcg
      721 gcacggtcca gcggcgttac atggggacac ttggcacccg caggctcgac cttggcgacg
      781 gctacggaat ccatggaacg gacgagccgg agtcggtcgg ccattccgta agtcatggtt
      841 gtgtgcgaat gttgaatcag gacgtcgaga agctctatcc gatggtcgct atcgggacgc
      901 ccgttttcat ctactgagcg ttcggcacag ctctcgcatc tccgtaggga accatccgta
      961 aggaaccaat ggaaacgacc atcccaagat cacgccgccg cccgcggcgc agcgccgctc
     1021 ggcccagcac tggccgcaag cgcactgtca tcgacgccgt tcgcgagctg ccgaactttc
     1081 ttcggctttt atacgggttg ataaccgacc cacgggtgga gctgctggac aagctcctcg
     1141 tagcaggagc ggtcgcttac gtgatgatcc cggaagacgt ctttcccgat ttcatcccgt
     1201 tgatcggaga ggtggacgac gtttttgttc ttgtgctggc gatccggcag ctgatgaaga
     1261 gcgccggtcg cgaggtgatt ctggagcact ggatgggcga tccggaagag ctcgacgagc
     1321 tcaatctgga gcgcgttctg ggcgctgcct cgtttttcct gccacgacgg atgcgccggc
     1381 gtttgcggac gatcggtcga gtgtgataca ttagtccatg gcgacacaca cttcgcaaaa
     1441 ttccaggccc gctagaccgg ttcgtaccgg cggcgggcct ttgtctatcc ggcaggacga
     1501 agggctgccg agcgggtatg cgcggattcg gtcagagccc gcgctcacgt tcgatgacgt
     1561 tctgctgctc cccgcgcatt ccctggttca cccccgggat gtcaacactt cgtcgcgctt
     1621 cacgcgcggc atcacgctca acgttccgct cgtttccgca gcgatggata ctgttacgga
     1681 atcggagatg gcgatcgtca tggcgcgagc cggtggcatc ggcgtcgtgc acaagaacat
     1741 gtcgatcgat cgtcaggccg ctgaagtcga tcgtgtgaaa cggtccgaga gcggaatgat
     1801 tctggatccg atcacgctgt caccttccgc atcgttgcgc gaggcggtcg cgctgatgaa
     1861 ccgcttcaag atatccggcg taccgatcgt cgacggtgga cgtctcgtcg gcatcatcac
     1921 gaatcgcgat ctgcagttcg aatccaatct cgatcgtccg ctgcaggacg cgatgacgaa
     1981 gaagaatctc gtcacggcgc cagtgggtac cacgctcgac gaagccgagc agatactggg
     2041 agcgcaccgt atcgagaagc tgccggtcgt cgatcagaat gggaatctgc gcggcctcat
     2101 caccgtcaag gacattcaca agcggcgcga atttccgaat gccaacaagg accagcacgg
     2161 acggctgcgt gtcgctgccg cgataggagc caacaactac gaagcgcgcg ccgcggcgct
     2221 cgtcgacgct ggtgtggatg ttctcatcat cgacaccgcg cacggtcatt cggaagcggt
     2281 gctccaggca acgggtgacg tacgcgagcg ctttccggac gttcaactgg tcgcgggcaa
     2341 cgtggcgact cgcgcgggcg cgcgggcgct cgcggagcgt ggtgtggatg cgatcaaggt
     2401 cggcgtcgga ccaggctcca tttgcacgac gcgcgtcgtc accgggattg gcgtaccgca
     2461 gctcacggcg gtgctcgacg ctgtggacgg cgctggtgac gtgcccatta tcgccgatgg
     2521 cggcatcaaa tattcgggcg acattgtaaa agctctttcg gctggtgcgt cgagcgtgat
     2581 gatggggtcc atgctggccg gaaccgaaga gagcccgggc gagtcgattc tgatggaagg
     2641 acgccggttc aagatgattc gcggcatggg cagccttgcg gcgatgcagg atggaagtgc
     2701 ggacaggtac ttccaggaag gcgagatgtc ggccaagaaa ctggtaccgg aggggatcga
     2761 agggcgggtc ccgtacaagg ggccagcggt cgatgtgctt ttccagatgg tcggcggatt
     2821 acgtgccgga atgggctacg ccggctgcgg gactattgac gaactccgga ccaagaccga
     2881 atttgttcgc atcaccgcgg ctggattgcg tgaatcgcac ccacatgatg tggtcattac
     2941 gcgcgaggca ccaaactatt cggtgtgatg gacgctggtg gggaaggtgt cccgcgcgta
     3001 catgagagca gtggcgccac caacgcaggg cgcccgttca ccgtagttaa gagacagtag
     3061 caggagattg ttgcaggcag ggctctgggt tgtgtcacac acgatccggg gtgccgccgc
     3121 gtctgttcgc gtgcgtgcct ccggatgcag gaactcgtcg aggggattac atgggacttg
     3181 ggtcgcggaa gagcatcgcg ctacttcagg ctgaagcgag tggagagggg gaggagcgaa
     3241 cgttgcggcg cgcgcttggc gcgctcaacc ttacaacgct cggcattggc gccatcatcg
     3301 gtgcaggaat tttcgtcctt accggaaccg cagctgcgca acatgccggt ccgggagtcg
     3361 tctactcgtt catcctggct ggaataggct gtctcttcgc cggcctctgc tacgccgaat
     3421 tcgcggcgat gattccaatc gctggaagcg catacaccta cggatacgca acgctcggcg
     3481 aattcatcgc ctggatcatc ggctgggacc tgatcctcga atacctgttc ggagcggcga
     3541 ctgtcgcggt cggctggagc ggttacttca cggcattcat gaatgagatc gggttgcaca
     3601 tcccgtatca gtatgcccag gctccgctgc gagtggttgg aacgcaccat ctcgtgcagt
     3661 cgacattgtg catctcaccg gcgacgaatc agatcgtgac cgacacgctt gccacatgcg
     3721 cgcccggtct tacggcagtg cagggcgtga tcaatgtccc tgcgatcgtg ctgacgctac
     3781 tcatgaccgc cctgctcgtg gtcggcatca aggaatcggc gaatttcaac aacatcatcg
     3841 tgatcgtgaa ggtcgcgatc gtactgctcg tcatcgcgtt cggtttcgcg tacgtgaaca
     3901 aggccaactg gcatccgttc attcccgcca ataccggtca ctttggtgac tttggatgga
     3961 gcggcgtcgc ccgcgcagca ggtgtcgtct tcttctccta cataggcttc gacgcggtgt
     4021 ccacggcagc gcaggaggcg aagaatccgc aacgcgacat gccgataggt attctcgcgt
     4081 cgctcgcgat ctgcaccgtg ctgtacatcc tgatgtcgct cgtcatgacg ggcctcgcga
     4141 actacaagac gctcgacgta ccgcatccgg tgttcgtcgc aatcgcagct gcaggtccgg
     4201 cgctcgcatg gatgcgtcct atcgtcaaca tcggcgcaat cgccggtctc gcgtcggtcg
     4261 tactcgtaat gctcatggga caaccgcgca tcttcttctc gatggcgcgc gatggtctgc
     4321 ttccaccggt gttcggcaag gtccatccga agttccagac accgtacgtc acaacgattc
     4381 tcacaggcgt cgttgcggct gtcatcgccg gctacttccc catcggcctg ctcggagagc
     4441 tcgtctcgat cggcacgctg ctcgcgttcg tcatcgtctg cgccggcgtg atcgtgttgc
     4501 gctatcgtca gccgaatctg gagcgtccgt tccgtacgcc gctcgttccg ctcgtcccga
     4561 ttcttggtat catcagctgc ggtgccctga tggcatcgct gcctgttgac acatggattc
     4621 gtctgatcgt gtggatggcg ctcggtctc
//
LOCUS       DATIMD010000377         2731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4479145, whole genome shotgun sequence.
ACCESSION   DATIMD010000377 DATIMD010000000
VERSION     DATIMD010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2731
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4479145"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..608
                     /locus_tag="VLI40_08385"
                     /pseudo
     CDS             76..608
                     /locus_tag="VLI40_08385"
                     /inference="COORDINATES: protein motif:HMM:NF013460.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
     gene            609..1004
                     /locus_tag="VLI40_08390"
     CDS             609..1004
                     /locus_tag="VLI40_08390"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HSU97234.1"
                     /translation="MSSWCAVAALIAEVANSRLELSRSSYSLVVGTDVTSLAPDWVVT
                     DAQRGSNERRSNGQTIIAVAVAHATQCPYCIRGHTAAAVRTRATPEEIMEAIWVAVEM
                     RAGGAYAHSILALDTIAELQAAQGIGGAK"
     gene            1001..2002
                     /locus_tag="VLI40_08395"
     CDS             1001..2002
                     /locus_tag="VLI40_08395"
                     /inference="COORDINATES: protein motif:HMM:NF014818.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde 3-phosphate dehydrogenase
                     NAD-binding domain-containing protein"
                     /protein_id="HSU97235.1"
                     /translation="MSVRVAINGLGRIGRAILKLTLDEPAFELVAINDLADVENLAYL
                     LRFDTVYGRYAKTVTVEGTGLAVSDRKIRVLSIRDPLDLPWKDFGIELVFECTGALTR
                     HEDLEKHLRAGARFVLLSAPSKDEDIATVVHSVNVAAGTSAIISCASCTTNCITPIVE
                     VIGRRIGFRKAAMTTVHAYTSSQAVVDGPNKRFRRGRAAGANLVPATTGAALATTRAL
                     PEYAGRFDGIAIRVPLPVGSIADLTFVASRSTSVEEVNGILAEEAATARYAGVLGVSR
                     DPLVSSDIVGDSRASVVDLDLTKVIDGDLVKIMSWYDNEWGYANQMVREAVSLTYRR"
     gene            2327..>2731
                     /locus_tag="VLI40_08400"
     CDS             2327..>2731
                     /locus_tag="VLI40_08400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97236.1"
                     /translation="MKGNDKHNFTWAMGAVAAVALSLPLMTVAPAVSAAGITTSPPAK
                     FKKVSTLVKLPDFLPGLGTLYVDPATLPVGPFLGYDHKGKLVNITYMVPLKDIDGHKN
                     FETLGTVAAGVKLDHTDIQYNPGHPGVEEPHYH"
BASE COUNT          503 a          824 c          872 g          532 t
ORIGIN      
        1 gaaggtgatc acctacctgc aatcgctgcg acacaacgga tcgtcgtgat cgcgcgctac
       61 accaggacag cggtcgtgct gcattggacg atcgcgttga ttgtcgtcgc gcagttcggc
      121 tgggggtggc tgatgcagga aattccgaag tcgccgccag ggttgcgtgc ggatgcattc
      181 aactttcaca agtcgatcgg cttgtgcctg ctcgcgctga tgctgtttcg cctcggctgg
      241 cgcagcgccc gccaccactg cacgcgctgc cgatgtggca agcgcgtctc gcgaagacga
      301 cgcacgctgc gctatatgct gcgctgatcg tgatgccggt cgccggatat ctcggttcgg
      361 tatggagcgg ctatccggtc aagtggttcg gcatcacgtt gccggcctgg ggaaccgcgg
      421 tgccggcgct caaggaagcg atcagcgtcg tccatgtttc aacgagctgg gcgttgctgg
      481 cgcttgtcgg attgcatgtc gccggcgtcg tgcatcacgc gcttcgcgcc gacggcatcg
      541 cgatgaggat gacgctcgcg aggcgaaggc cttctcccgc tgccaggggc atgttgactg
      601 tcgactgaat gtcgtcttgg tgcgccgttg ccgccctgat agcagaagtc gcgaactccc
      661 gactcgagct atcgcgatct tcctattctc tagtcgtagg gacggatgta acgtcgttag
      721 cacctgattg ggttgtcacc gacgcgcagc gtggcagcaa cgagcgccga agcaacgggc
      781 agacgattat cgcggtggcc gtggcgcacg cgacgcagtg tccctattgc attcgtggcc
      841 ataccgctgc cgctgtgcgc actagggcaa ctccggagga gatcatggaa gccatctggg
      901 tcgcagtcga aatgcgcgcg ggaggcgctt acgcgcattc gatcttggcg ctggatacga
      961 tcgccgaatt gcaggccgcg caaggtattg gtggggcaaa gtgagcgtca gggtcgcgat
     1021 caacggcctc gggcgcatcg gacgcgcgat cctgaagctc accctcgacg agccggcatt
     1081 cgagctggtt gccatcaacg atctcgccga tgtagagaac ctggcttatc tgcttcgctt
     1141 cgatacggtg tacggacgct atgcgaagac agtgacggtt gaagggaccg gcctggccgt
     1201 gtccgatcgc aagatccggg tgctgagcat ccgcgacccg ctggatctgc cgtggaagga
     1261 cttcggcatc gagctcgtgt tcgaatgcac cggtgcgctc acgcggcacg aagatcttga
     1321 aaagcacctt cgggccggcg ctcggttcgt cctgctgtcg gcaccgtcga aggatgaaga
     1381 tatagcgacg gtcgttcaca gtgtgaacgt tgccgcgggc acctccgcta tcatctcgtg
     1441 cgcgagctgc acgacgaact gcatcacgcc catcgttgaa gtcatcggcc ggcgcatcgg
     1501 cttcaggaaa gccgcgatga cgaccgtgca tgcttacacg tcttcccagg cggtcgtcga
     1561 tggaccgaac aaacgctttc gtcgcgggcg ggcggccgga gcgaacctcg tgccggccac
     1621 gacaggcgcg gcgctggcca ccacgcgggc gctgcctgaa tacgccggcc ggttcgacgg
     1681 aattgccatc cgggtaccgc tccccgtcgg ctcgattgcg gacttgacgt tcgtcgcgtc
     1741 acgaagcacg agcgtcgagg aggtcaacgg catccttgcc gaggaagccg caaccgcacg
     1801 ctacgccggc gtgctcggag tgtcccgcga tccgctggtc tcgtcggaca tcgttggcga
     1861 ttcgcgcgcc tccgtcgtcg atctcgacct caccaaggtg atcgacggcg atctcgtcaa
     1921 gatcatgagc tggtacgaca acgagtgggg ctacgcgaat cagatggtgc gcgaggcggt
     1981 ttccctgacc tatcgacgtt agatcgcgac gcgcgtcgcc gatcagtacc gagcgctgtc
     2041 ggtatgacga atttgcgtca gacgcgcagc gcctcttcgc aggtgcatta ccggttcgcc
     2101 gaagttcgaa gtcaccgcat agcctcccta acaccgcgac ccgatttgtg ccgatgtcga
     2161 gaaagccgga cgccaactgt tgagatttgc ctatgttcgc ggccgatgcg tcgcggtagt
     2221 gttgtcgctg tgggcgcaaa aggttgtggc attgcgggac acggcattcg gaaggcgtgc
     2281 gcaacatcgg cacatcacgc gtccgtttca tacaaggaga tctgacatga aaggaaatga
     2341 caagcacaat ttcacgtggg ccatgggcgc ggtcgcagcg gtcgcactca gcttgccgct
     2401 gatgacggtg gcgcccgcag tatccgccgc cgggatcacc acgtcaccgc ccgccaagtt
     2461 caagaaggtc agtacgctgg tgaaacttcc ggatttcctg cctggactgg gaacgctcta
     2521 cgtcgatccg gcgacgctgc cggtcgggcc gttcctcggc tacgaccaca aggggaagtt
     2581 ggtcaatatc acctacatgg ttccgctcaa ggatatcgac ggtcacaaga atttcgagac
     2641 gctcggtacc gtcgcagcgg gcgtaaagct cgaccatacc gacattcagt acaacccggg
     2701 ccatcccggc gtcgaggagc cgcactatca c
//
LOCUS       DATIMD010000378         7667 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3615105, whole genome shotgun sequence.
ACCESSION   DATIMD010000378 DATIMD010000000
VERSION     DATIMD010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7667
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3615105"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..898)
                     /locus_tag="VLI40_08405"
     CDS             complement(<1..898)
                     /locus_tag="VLI40_08405"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HSU97237.1"
                     /translation="MFDANTRTVVVVGAQWGDEGKGKLVDVLSERADWVVRYQGGANA
                     GHTVDLGETSFVLHQIPSGILHEGVRCAIGNGVVLDPETIFTEIDELVSDGVDVEGRL
                     YVSERAHLVLPYHKLVDSSSAASRAIGTTGRGIGPAYEDKIARRGVRVLDLRHPDSLR
                     PIVEAAVAHANAQLVAWGVAERASVADTMALLERLAPRLLSLAEDVGLAIHRAQRSNA
                     AVLLEGAQGSLLDVDHGTYPFVTSSTTTSGGAAVGVGIAPRSLDRCLGVVKAYTTRVG
                     QGPLPTEFAEPLQSEMRKLGNEF"
     gene            complement(1045..3327)
                     /locus_tag="VLI40_08410"
     CDS             complement(1045..3327)
                     /locus_tag="VLI40_08410"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU97238.1"
                     /translation="MTSSARDRTTVDPRESDPAAWLESLLADVATSSDFESAAGLLIA
                     RFCELVGSSRGYALILDTGAHQLVPSVAIGYDNLDPPTARTMDDANDPFVVSLLGMQV
                     VACAHGLPRSGISRQTRLIAVPFPQPRIVDAPRFIDRADADRRLSSPCSVATVDSSRA
                     WLERPDGAALSPYGVFVLEVDSLPVTLDRIACAAQLAGPMLSRLAASDAHRGRAEELA
                     DQRSVLTSIVNSLPDPIVIIDGDRQIVVQNQRAEHLLSMRERDSEGRRRAVEINNLLL
                     TSHLSKDPAPSGTNVAAEARELNMVDPDDGTDLLFEVLTQPLDENENAIVSVLRDVTD
                     LRRAANELELQVQRVRLAEYEAKRESDRLNLILTNVADPILVTDDRANIILMNRQAEL
                     LFGAATPNIGYAAGDRSAAVRANDTKFTTFISDFSLSPESARREDMELQKPGSEPMTI
                     PMEVVAGKIVDRRGEPLAIVSVLHDLTEQAENERLYEELKNFSNELEARVRAATADLG
                     EQNVRLQWQSRELEKANRLKSEFLASMSHELRTPINALIGYTALMLDRIYGDLNDRQE
                     EGLVRIRAAAQHLLALINDILDLAKIEAGRMPLHLEDTVLQELMREASVQVDPLIKKK
                     GLTYRWVGPNEPLHMMTDRTKVKQIMLNLLSNAVKFTHSGTITLSAQQEGVLVRLDVT
                     DSGIGIRKEDLSAIWEDFRQVDQSRTREFGGTGLGLSITRKLSGALGGRVTLSSEYGK
                     GSTFTVFLPILTEPHRERDA"
     gene            complement(3308..3604)
                     /gene="gvpA"
                     /locus_tag="VLI40_08415"
     CDS             complement(3308..3604)
                     /gene="gvpA"
                     /locus_tag="VLI40_08415"
                     /inference="COORDINATES: protein motif:HMM:NF006874.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0012506 - vesicle membrane [Evidence
                     IEA];
                     GO_component: GO:0033172 - gas vesicle shell [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle structural protein GvpA"
                     /protein_id="HSU97239.1"
                     /translation="MAVERSPSGSSLIDILDRVLDKGIVIDAWVRVSLVGIDLVTVEA
                     RIVVASIETYLKYSEAVGITQPMSRPRELAQADELERVQFENAELRRRLDQLGA"
     gene            complement(3604..3915)
                     /locus_tag="VLI40_08420"
     CDS             complement(3604..3915)
                     /locus_tag="VLI40_08420"
                     /inference="COORDINATES: protein motif:HMM:NF012944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein"
                     /protein_id="HSU97240.1"
                     /translation="MPELVSPSRSTGLVEILDRVLDKGLVIAGDIKINLANVELLTIQ
                     IRLLVCSIDKAEQIGMNWWRYDPRLTSQTASAVAASDLNDRLDRIERQLAKLSSSDQE
                     E"
     gene            complement(3925..4623)
                     /gene="gvpJ"
                     /locus_tag="VLI40_08425"
     CDS             complement(3925..4623)
                     /gene="gvpJ"
                     /locus_tag="VLI40_08425"
                     /inference="COORDINATES: protein motif:HMM:NF016977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0012506 - vesicle membrane [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein GvpJ"
                     /protein_id="HSU97241.1"
                     /translation="MSADSDPRDQPRNARFEEPFEEPFEELRVGSAATLLGEEPLDLS
                     DLLNTVLDRGAVVHGEVTIAVADVDLIRLNIGLLLQAVATAEQRMRTTPEPSRSIAGS
                     FGSIPRNAAPILAGAEPGRGEVPALAETQRPVGQSLNTVAQGLPDRINADAAGPETGL
                     ARLVLTLIEVLRKVLEHQAVRRMEGGRLTDEEVERLGLALAKLNDRMGELKRVFGLSE
                     EDLQIDLGPLGRVR"
     gene            complement(4613..5407)
                     /locus_tag="VLI40_08430"
     CDS             complement(4613..5407)
                     /locus_tag="VLI40_08430"
                     /inference="COORDINATES: protein motif:HMM:NF018129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GvpL/GvpF family gas vesicle protein"
                     /protein_id="HSU97242.1"
                     /translation="MTATIEYVYCVVPAALVLNDTLRDAPRGLDRAPVRGIVRADVAA
                     LVSAVEAEQYSDDAPAERMGDPEWLTPRAVAHDAVITWAADREAVVPFPMWVMFGDER
                     AVSAMLDARRDEFREILDRVSGARELCVRISADQIALAAAAERMDDRLGDLERQADVA
                     TPGQAYLMRRKLAELRKSATRDAASRIADHAHSALSDRSRDSVARDTSASNEPDVLLD
                     AAYLVDNDRYDSFRSALTELMATYTPAGLRFDFTGPWPPYHFVRER"
     gene            complement(5404..5709)
                     /locus_tag="VLI40_08435"
     CDS             complement(5404..5709)
                     /locus_tag="VLI40_08435"
                     /inference="COORDINATES: protein motif:HMM:NF016976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein GvpG"
                     /protein_id="HSU97243.1"
                     /translation="MGLLSSILLAPFTGPWDGTMWTLDKVRRAVEDELTDDSAIKEDL
                     MRLQLELEAGDIDDAEYLEREQVIMQRLREVRAWREQLGMSVGGGPVRVARDDDDAR"
     gene            complement(5711..6556)
                     /locus_tag="VLI40_08440"
     CDS             complement(5711..6556)
                     /locus_tag="VLI40_08440"
                     /inference="COORDINATES: protein motif:HMM:NF018129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GvpL/GvpF family gas vesicle protein"
                     /protein_id="HSU97244.1"
                     /translation="MSDDRMSALDASLFDTTSKSDVASESLATAPAEGKYVYCIIRHQ
                     SPRDFGDIGIGGSARVYTVHHEELAAVVSDTPIVIYDPTRENVLAHEFVNETVMREFT
                     VIPMSFGTVFRSEEDVGQLLRSTYEAFTDVLEKMKDKIEFGVQIRWDRDRVVESIEQD
                     NDEIRKLKDEITRNASSSTYFARMQLGRLIEGALEESASRYVATVHEELKRVSVASRS
                     NKVIGDRMIMNAAFLVNRSGEKAFDEAVKELSRRYEHLLAFKYTGPWPPYNFVNIKLK
                     LEKAN"
     gene            complement(6606..>7667)
                     /locus_tag="VLI40_08445"
     CDS             complement(6606..>7667)
                     /locus_tag="VLI40_08445"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSU97245.1"
                     /translation="GRARPAGSRAEADARAVCAAWLSDAGFVVDQRPFNYSAFPGTWG
                     TPIAGLVLLLAAASAAGGTIRGDGAKNAGIAAGIVLVIAISVTGWWLGRYGTRQVPFL
                     RRDGVNLEARRGVPAVWLMAHLDSKSQPVSLLIRASGAVGVLASWICLILVWIASRVV
                     PVPAALLLGIATCGAVASVPLLVAWVGASGSGTLDNASGVAAVLRAASVIDVAVPVGV
                     IITSAEELGLAGARAWVQAKPVGVVINCDGVDDRGAVTITATGAGHRLLQSLRRAGVL
                     RFDARFRRGLPGVLMDSTAFADAGWAACTVSQGTRYSLARVHTADDTLDGMSGVGVEG
                     AAGVIALLVDAIVGARHSE"
BASE COUNT         1450 a         2538 c         2241 g         1438 t
ORIGIN      
        1 caaactcgtt tccgagcttg cgcatctccg actgcagcgg ctcggcgaat tccgttggca
       61 gtggtccctg ccccacgcgt gtcgtgtacg ccttgacgac gccgaggcag cgatccagcg
      121 agcgcggcgc gatgccgacg cccacggcgg cgccaccaga ggtagttgtg ctcgacgtga
      181 cgaacggata tgtcccgtga tcgacgtcga gcagcgatcc ctgtgctcct tcgagcagca
      241 cggcagcgtt gctgcgttgt gctcgatgaa tagcgagacc cacgtcctcg gcgagcgaaa
      301 gcagacgggg cgcgagacgc tccagcagcg ccatcgtgtc cgcgaccgac gcccgctccg
      361 cgacacccca cgcaacgagc tgcgcattgg cgtgcgcgac agcggcttcg acgatcggac
      421 gcagagagtc cggatgacgc agatcgagga cgcgcacgcc acggcgcgcg atcttgtcct
      481 cgtacgccgg accgattcca cgccccgtgg tgccgatcgc gcggctcgca gcgctgctcg
      541 aatcgaccag cttgtggtac gggaggacca ggtgcgcgcg ttcgctgacg tacaaccggc
      601 cctcgacgtc gactccgtct gaaaccagct cgtctatttc ggtaaagatg gtttcgggat
      661 cgagcaccac accgttgccg atggcgcacc ggacgccctc gtgcaggatc ccgcttggaa
      721 tctggtgcag cacgaatgac gtctcgccca ggtccacagt gtggccggcg ttggcgcctc
      781 cctgataccg gacgacccag tcggcgcgct ccgagagcac gtccaccagc ttgccctttc
      841 cctcgtctcc ccattgcgct ccgaccacta cgacggtgcg tgtattcgca tcaaacatgt
      901 caactccgta aacacaaaaa cgccccgtct ggcgcggcgg ggcgttttgt taatctacgt
      961 attggagcca acatgtcaac gtgagaaatt catccgcatg ctaccggcgc gctacccgcg
     1021 tgctaaccgc gtggtagccg catttcaagc gtcccgctcg cggtggggct cggtgaggat
     1081 cgggagaaat acggtgaacg tggatccctt cccgtattcg ctgctgagag tcacgcggcc
     1141 tccgagcgcc ccggagagct ttcgcgtgat gctgaggcca agcccggtcc cgccgaactc
     1201 gcgcgtgcgt gactggtcca cctggcggaa gtcctcccag atggcggaca gatcttcctt
     1261 ccgtattccg atcccgctgt ccgtgacgtc cagtcgaacc agcactccct cctgttgagc
     1321 tgagagcgtg atggttcccg agtgcgtgaa cttgaccgca ttggagagca ggttcagcat
     1381 gatctgcttg accttggtgc gatcggtcat catgtgcagc ggctcgttcg gacccaccca
     1441 ccggtacgtc agacccttct tcttgatgag tggatcgacc tgcaccgacg cctccctcat
     1501 cagctcctgc agcacggtat cctccagatg cagcggcatg cggcccgctt cgatcttcgc
     1561 gaggtcgagg atatcgttga tgagcgcgag cagatgctgt gctgccgcgc gaatacgcac
     1621 gagaccttct tcctggcggt cattcaggtc gccgtagatc cggtccagca tcagtgcagt
     1681 gtagccgatc aacgcgttga tcggcgtgcg cagctcgtgc gacatgcttg cgagaaattc
     1741 cgacttgagc ctgttggcct tttccagctc gcgcgactgc cactgcaggc ggacgttctg
     1801 ctcgcccaga tccgcggtcg ctgcacgcac gcgcgcttcg agctcgttgc tgaaattctt
     1861 gagctcttcg tacaaccgct cgttctccgc ctgctcggtc aggtcgtgca gcactgaaac
     1921 aatcgcgagc ggctcacctc gcctgtcaac gatcttgccg gcgacgacct ccatgggtat
     1981 ggtcatcggt tcgctgccgg gcttctgcag ctccatgtcc tcgcgccgcg ccgattccgg
     2041 gctcaggctg aaatcggaga tgaacgtggt gaacttggta tcgttggcgc gaacagccgc
     2101 ggagcgatca cccgccgcgt aaccgatgtt gggagtggca gcgccgaaca gcagctcggc
     2161 ctgacggttc atgaggatga tattcgcgcg atcgtcggtg acgaggatgg gatcggcaac
     2221 gttcgtgaga atcagattga gacgatcgct ctcgcgtttt gcctcgtact ccgccagtcg
     2281 cacgcgctgc acctgcagct cgagctcatt ggcggcacgc ctgagatccg tgacgtcgcg
     2341 cagaaccgag actattgcat tctcgttctc atcgagcggt tgcgtgagaa cttcgaacag
     2401 aaggtcggtt ccgtcgtcag ggtcgaccat gttgagctca cgcgcctccg cggcgacgtt
     2461 ggtaccggac ggcgcggggt ccttggacag atgcgaggtg agcagcaggt tgttgatttc
     2521 cacggcgcgg cgacgcccct ctgaatcgcg ctcgcgcatg ctcagcaaat gctccgcacg
     2581 ctggttctgc accacgatct gccgatcgcc gtcgatgatc acgatcggat caggcagcga
     2641 gttgacgatc gatgtcagca ccgagcgctg atcggccagc tcctcggcgc ggccgcggtg
     2701 cgcatccgac gcggcgagcc gcgacagcat cggaccggcc agctgcgccg cgcatgcgat
     2761 ccggtccagc gtgaccggca gcgaatccac ctccagcacg aatacgccat acggtgatag
     2821 cgcggcaccg tcgggccgct ccagccacgc acgcgacgag tcgacggtcg ctaccgagca
     2881 cggactcgac aatcgccgat cggcatcggc gcggtcgatg aagcgcggtg catcgacgat
     2941 tcgtggctgc ggaaatggca ccgcgatgag tcgcgtctgg cgcgatatgc cggagcgcgg
     3001 gaggccgtgt gcgcacgcga cgacctgcat gccgagcagc gaaacgacaa atggatcgtt
     3061 cgcgtcgtcc atcgtacgcg cggtcggcgg atcgagattg tcgtagccaa tggcaacgga
     3121 tggcaccagt tggtgtgccc ccgtgtcgag tatcaaggcg tatccgcggc tcgatcccac
     3181 aagctcgcag aatcgcgcga tcaacaaacc agccgccgat tcgaaatcgg aagatgttgc
     3241 tacatccgca aggagtgatt ccagccacgc ggcgggatca ctctcgcgag ggtctaccgt
     3301 cgtacggtca cgcgccgagc tggtcaaggc gacgccgtaa ttcagcgttc tcgaattgta
     3361 cgcgttcgag ctcgtcggcc tgagccaact cgcgcggacg cgacatcggc tgcgttatac
     3421 cgaccgcttc cgaatatttc agatacgtct cgatggatgc gaccacgatt cgcgcttcga
     3481 cggttacgag gtcgattcca acgagtgaga cgcgtaccca tgcgtcgata acgattccct
     3541 tgtcgagaac ccggtcaaga atgtcaataa gtgagcttcc gctcggtgac cgctcaacgg
     3601 ccattactcc tcctggtcag atgaagacag cttggcgagc tgacgctcga tacgatcgag
     3661 tcgatcgttg agatcgctcg cagcgacggc ggacgccgtc tggctcgtca gacgcggatc
     3721 ataccgccac cagttcatgc ctatctgttc cgccttgtcg atcgaacaga cgagcagacg
     3781 aatctggatc gtcaacaact cgacgttggc gagattgatc ttgatgtcgc cggcgatcac
     3841 cagtcccttg tcgaggacgc ggtcgagaat ctcgaccagc ccggtgctgc gtgatggcga
     3901 aactagttca ggcaattggc agcctcatcg cacgcgcccc agtgggccaa ggtcaatttg
     3961 caaatcctcc tccgaaagtc cgaaaacgcg tttgagctca cccattctat cgttcaactt
     4021 cgcaagagcc agtcccaatc gctccacctc ttcatcggtc agccgacccc cttccatgcg
     4081 ccggaccgcc tgatgctcga gcaccttccg cagcacttcg atcagcgtca gtaccaatcg
     4141 agcgagtccg gtctcggggc ccgccgcgtc tgcgttgatc cggtcgggca gaccctgcgc
     4201 caccgtattc agagactgcc ccactggtcg ctgcgtttca gcgagcgctg gcacctctcc
     4261 gcgtccgggt tcggctccgg caagaatcgg cgcagcattc cgcggtatcg acccaaagct
     4321 accagcaatt gaccgcgacg gctcgggagt cgtccgcatc cgctgttcgg cggttgcaac
     4381 cgcctggagc aataaaccga tgtttagcct gatcaaatcc acgtctgcga cagcgatcgt
     4441 cacctcgcca tgcaccaccg cgccccggtc gaggactgta ttgagcagat cgctgagatc
     4501 gagcggctcc tcacccagca atgtcgccgc cgacccgacg cgcagctcct caaaaggctc
     4561 ctcgaaaggc tcctcaaaac gcgcgttgcg cggctggtcg cgcgggtccg agtcagcgct
     4621 cacggacaaa gtggtatggc ggccacgggc cggtgaaatc aaagcgcaat ccggcggggg
     4681 tgtaagtcgc catgagctcc gtcagagcgg atctgaacga atcataccgg tcattgtcga
     4741 cgaggtatgc ggcgtcgagc agcacgtccg gctcattgga tgccgaggtg tcgcgtgcga
     4801 cgctgtcgcg cgagcgatcg gacaacgcgg agtgcgcatg atcggcgatg cgcgacgcgg
     4861 cgtcgcgggt cgccgatttg cgcagctccg caagtttcct gcgcatcaga taagcctgac
     4921 ctggcgtggc gacgtcggcc tggcgctcga ggtctccgag cctgtcatcc attcgctcag
     4981 ccgcagccgc gagagcgatc tgatcggcgg atatgcgtac gcacagctcg cgtgcaccac
     5041 tcactcgatc cagtatctcg cgaaattcat cgcgtctggc atcgagcatt gctgatacag
     5101 cacgctcgtc accgaacatc acccacatgg ggaaaggtac cacggcctcg cgatccgccg
     5161 cccatgttat gacggcgtcg tgcgcaaccg cccgcggcgt gagccactcc ggatcaccca
     5221 tgcgctccgc cggcgcgtcg tccgagtatt gctctgcttc gaccgcggat acgagcgccg
     5281 cgacatcggc tcgcacaatg ccccgaacgg gggcgcgatc cagtccccgc ggtgcatctc
     5341 tcagcgtatc gttcagcacg agcgccgccg gaacgacaca gtagacatac tcgatcgtcg
     5401 ccgtcaacgc gcgtcgtcgt catcacgtgc gacgcgcacg gggccgccac caacagacat
     5461 ccccagctgc tcgcgccatg cacgcacttc acgaaggcgc tgcattatca cctgttcgcg
     5521 ctccaggtat tcagcgtcgt cgatgtcacc ggcctcgagc tccagttgca gccgcatgag
     5581 atcttccttg atcgcggagt cgtccgtcag ctcgtcctcg accgcgcgac gcaccttgtc
     5641 cagcgtccac atcgtgccgt cccacggccc ggtgaatgga gcaagcagga tggacgacag
     5701 caatcccatg ctagttggcc ttctccagct tgagcttgat gttgacgaag ttgtacggcg
     5761 gccacgggcc ggtgtacttg aatgcgagga gatgctcgta gcggcggctc agctccttca
     5821 cggcttcatc gaacgccttc tcgccggacc ggttcacgag aaatgccgcg ttcatgatca
     5881 tgcgatcgcc gatcaccttg ttgctcctgc tcgcaaccga gacccgcttg agctcctcgt
     5941 gcacggtcgc gacgtagcgg ctcgcggatt cctccagcgc cccctcgatc agtcttccaa
     6001 gctgcatgcg cgcgaaatac gtggacgacg acgcattgcg cgtgatctca tccttcagct
     6061 ttctgatctc gtcgttgtcc tgctcgatgc tctccactac gcggtcgcga tcccagcgaa
     6121 tctgcacgcc gaactcgatc ttgtccttca tcttctcgag cacatcggtg aacgcttcgt
     6181 acgtggaccg aagcagctgc cccacatcct cctcggaccg gaacacggtt ccgaacgaca
     6241 tgggaatcac ggtgaactcg cgcatcactg tctcgttcac gaactcgtga gcgagcacgt
     6301 tctcacgtgt cggatcgtag atcacgatgg gcgtgtcgct caccacggcg gccagctcct
     6361 cgtgatggac agtgtagacg cgcgcgctac caccaattcc tatgtcgcca aaatcccgcg
     6421 gggactgatg ccggattatg cagtagacgt acttgccctc agcaggtgcg gttgcgagtg
     6481 attcactcgc gacatccgac ttgctggtgg tgtcaaaaag cgaagcgtcg agcgcactca
     6541 ttcggtcgtc actcaatggt tgtcgttcca tttccctctg aagcctcctt cggtccccca
     6601 agctgttact cgctgtgacg tgcgccaacg attgcgtcga cgagcaaagc aatcacgccg
     6661 gctgcacctt cgacgccaac gccggacatt ccatccagag tatcgtccgc agtgtgcacc
     6721 cgggcaagcg agtaacgagt tccctgactg acagtacacg cggcccatcc cgcatcagca
     6781 aacgcggtcg agtccatcag gactccgggc agacctcggc gaaatcgagc atcgaaccgc
     6841 agcactccag ccctgcgcaa agactgcaat agacgatgtc cggcgccggt agctgttatc
     6901 gttaccgcac ctcgatcatc cacaccatca cagtttatca ctacaccaac tggcttcgcc
     6961 tgcacccacg cccgcgcgcc agcgagtccg agctcctcag ccgaagttat tatcactccg
     7021 acaggaacag caacgtcgat gacactcgca gctctcagaa cagctgcgac accactggca
     7081 ttgtccagcg ttccgctacc gctggcgcca acccacgcga ctaataatgg cacggaagcg
     7141 acggctccgc aggtggcgat gccgagtagc agcgccgcag gcaccggtac gacgcgagaa
     7201 gcgatccaca caagaatgag gcagatccag ctggccagca ccccgaccgc cccggaggca
     7261 cgtatcagga gcgagaccgg ctgactcttg ctgtcgaggt gggccatgag ccacacagca
     7321 ggcacacctc gccgagcctc caggtttacc ccgtcgcggc gcagaaaggg gacttgacgc
     7381 gtcccgtatc gtccgagcca ccatcccgta accgaaattg caattaccag cacaattccg
     7441 gccgcgatgc ctgcattttt ggcgccgtcg ccccgtatcg tcccgccagc ggctgacgca
     7501 gccgcaagga gcagaacgag tccggcgatc ggcgtccccc acgttccggg gaacgcagaa
     7561 tagttgaacg gacgttgatc caccacgaag ccggcatcgc tcagccacgc cgcgcaaacg
     7621 gctctggcat cggcctcggc gcgagatccc gcagggcgcg cccgtcc
//
LOCUS       DATIMD010000379         3145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5351078, whole genome shotgun sequence.
ACCESSION   DATIMD010000379 DATIMD010000000
VERSION     DATIMD010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3145
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5351078"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..1042)
                     /locus_tag="VLI40_08450"
     CDS             complement(116..1042)
                     /locus_tag="VLI40_08450"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HSU97246.1"
                     /translation="METSTEFNAADFEPGVGITPAVQWLIALNALVYFIQLTSPVGAA
                     DVAAWLGLSATEFPAHWWAIGTYMFVHAGFAHIATNMIMLWMFGPRVERAFGTRAFTY
                     FYLWCGLGGGIFHLLFEQHSGVIGASGAVVGVVLAYALKWPDDEVYILGVMPIRAVWL
                     AVWTIAWNVGMAFVDLTGYSSGSVAFMTHVGGLVFAWIYLHAPNSSSFDKIRRHVATV
                     PDDSNPQPIPKMQRPPKRRDGLPSADEAVARSNAIVKRRPQTPMISAPSPKPRTEDVN
                     GLLDKISREGLGSLSGDERELLQEISRKLRGS"
     gene            complement(1064..2080)
                     /locus_tag="VLI40_08455"
     CDS             complement(1064..2080)
                     /locus_tag="VLI40_08455"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HSU97247.1"
                     /translation="MPILSPLRITVLMGGASAERDVSLASGLRIADALAMRGHTVTAL
                     DPAAGVLSPSYLDELRRSNVGTKPPALEELAGLGNGRLLDGLTAMPEIRDADVVFLAL
                     HGGQGEDGTIQALLDMAGVRYTGSGHLASALAMDKDLSKILFRAAGVQTADWLMAPQP
                     GKLVEQSLGLPVVVKPSKQGSTVGLSIVRDVSQLDAAVAEAFRYDDEVMIERFIAGRE
                     LTVGVLGEETFPVGEIKPVKELYDYECKYTPGMAIEEFPANLSQGVTNKLREQSLRAF
                     RALKLRGYARVDFRLDDRGECFCLEANTLPGMTRTSLIPQGAAAAGMGFEELCERIVQ
                     LAIV"
     gene            complement(2086..>3145)
                     /locus_tag="VLI40_08460"
     CDS             complement(2086..>3145)
                     /locus_tag="VLI40_08460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSU97248.1"
                     /translation="KAFGAEVIVTPTAVAPDHPDNYVMMAKRIAEQTPNAILANQFYN
                     QANPDAHYATTGPELWEQTEGRITHFVASAGTGGTITGVGRYLKERNPDIKIIAGDPT
                     GSILAEYWRSHGEHKIEGSPYKVEGIGQDKVPGTLDMSVIDEYHTVSDRDAFAMSRRL
                     TREEGLFVGGSSGLIAKVALDLARRVDDPEALVVTFLCDTGERYLSKLYSDEWMRENQ
                     MLEAEHVTLADMLNRKDTSAPSIVSVAPASGVRQALNLMALHDVSQLPVMDGEECVGS
                     VVEATLSQRGLETPALLEATVREVMDAPFPSLASDEAIEFAVKLLSKSTPAVLVLDHG
                     HVEGIVTRSDMLRFMMGR"
BASE COUNT          643 a         1076 c          825 g          601 t
ORIGIN      
        1 ggaatgacga accctgccat aacatggatt cccgaggcgc gggaatgacg actccgggga
       61 ccctcgcggg aatgactgct catttgaaca gccttcgcca gaatgaacgt cgcgcttacg
      121 acccgcgcag cttccgcgaa atctcctgca gcagttctcg ctcgtccccc gacagactcc
      181 cgagtccttc acgcgagatc ttgtccagca gcccattcac atcttccgtg cgaggcttgg
      241 gactcggcgc cgaaatcatc ggtgtctgcg ggcgccgctt cactatcgcg ttgctgcgcg
      301 caactgcctc atcggcgctt ggcagtccat cacgacgctt gggcggacgc tgcatcttgg
      361 gaatcggttg cggattggaa tcgtccggca ccgttgcaac gtggcggcga atcttgtcga
      421 agctcgagct gttcggcgcg tgcagatata tccacgcgaa cacgagacca ccaacatgcg
      481 tcatgaacgc gaccgagccg ctggaatatc ccgtcaggtc cacgaacgcc atacctacgt
      541 tccacgcgat cgtccacacc gcgagccaca ccgcgcggat cggcatgaca ccgagtatgt
      601 agacctcgtc gtcaggccac ttgagcgcgt aggcgagaac cacaccgacc accgcgccgg
      661 atgcaccgat cactccactg tgctgctcga acagcagatg gaatattccg ccgccgagtc
      721 cgcaccacag gtagaagtat gtgaacgctc gcgtgccgaa cgcgcgttcc acgcgcgggc
      781 cgaacatcca cagcatgatc atgttcgtcg cgatgtgcgc gaagcccgcg tgtacgaaca
      841 tgtacgtgcc gatcgcccac cagtgggccg gaaactccgt cgccgacaga ccgagccacg
      901 ccgcaacgtc tgccgcaccg accggtgacg tcagctggat gaaataaacc agtgcgttga
      961 gcgcgatcag ccactgaact gccggtgtta taccgacgcc gggctcgaaa tccgctgcgt
     1021 tgaattcggt tgacgtttcc atggaccccc gcgcgaccct ttcctacaca attgccaact
     1081 gaacgatcct ctcacacaac tcttcaaatc ccattcccgc ggcggccgct ccctggggga
     1141 tcagactcgt ccgcgtcatt cccggtaacg tgttcgcttc gagacagaag cactcaccac
     1201 gatcgtccag gcggaaatcc acgcgcgcat atccccgcag tttcagtgcc ctgaacgccc
     1261 gcaaggattg ctcccgcaac ttattagtaa caccttgcga caaattcgcg ggaaactcct
     1321 caatcgccat tcccggcgtg tacttgcact cgtagtcgta gagttccttt acaggcttga
     1381 tctcgcccac cgggaaagtc tcctcgccca gtactccgac cgtcagctcg cggccggcga
     1441 tgaaccgctc gatcatcacc tcgtcatcat acctgaaagc ttcggcaacc gcagcatcta
     1501 attgagaaac gtcgcgaacg atcgacaatc ctaccgtcga cccctgcttc gatggtttca
     1561 cgacgaccgg tagtccgagc gactgttcga ccagtttgcc gggctgcggg gccatcagcc
     1621 agtccgcagt ctgcacaccg gcagcccgaa acaggatctt ggacagatcc ttatccatgg
     1681 cgagcgcgct ggccaggtgc ccgcttccgg tatatcgcac gccagccatg tcgagcagcg
     1741 cctgaatggt accatcctca ccctgtccac cgtgcagcgc cagaaacacg acatccgcat
     1801 cccggatttc cggcattgcc gtaaggccgt cgaggagccg gccattgcca agaccagcca
     1861 actcttccag cgccggaggt ttagtcccga cgttactccg ccgcagctca tcgaggtagc
     1921 ttggcgatag aacaccagcc gccggatcca gcgcagtaac cgtatgtccc cgcatcgcca
     1981 gcgcgtcggc gatccggagt cccgaagcaa gcgacacgtc acgctccgct gacgcgccgc
     2041 ccatcagaac ggtgatccgg agcggagaga gaatgggcat gattcctacc gtcccatcat
     2101 gaatcgcagc atgtccgatc gcgtaacgat cccttcgaca tgaccatgat ccagcaccag
     2161 caccgccggc gtgctctttg acagcagctt caccgcaaac tcgatcgcct cgtcactcgc
     2221 cagagacgga aacggtgcat ccatcacctc gcgcactgtc gcctccaaca acgccggtgt
     2281 ttccaggccc cgctgcgaca acgttgcctc gacaacagat ccaacacact cctcgccatc
     2341 catcaccgga agctgcgaca catcgtgcag cgccatgaga ttgagcgcct gccgcacacc
     2401 cgatgccggc gcgacactca cgatcgacgg cgcactcgta tccttgcggt tgagcatgtc
     2461 ggcaagcgtg acgtgctccg cttcgagcat ctggttctcg cgcatccact cgtcgctgta
     2521 caacttcgat agataccgct cgccggtatc gcacaggaac gtcaccacga gtgcctccgg
     2581 atcatcgacg cgacgcgcaa ggtcgagcgc gactttcgca atcaatcccg acgatccacc
     2641 gacgaacaat ccttcctcgc gcgtgagacg gcgcgacatc gcgaatgcat cacggtcact
     2701 cactgtgtga tactcgtcga tcacactcat gtcgagcgtt cccggaacct tgtcctggcc
     2761 gattccctcg accttgtacg gactcccttc gatcttatgc tcgccatgac tgcgccagta
     2821 ctcggccagt atcgagcccg tcgggtcgcc agcaatgatc ttgatgtcgg gattgcgctc
     2881 cttgagataa cgtccgacgc cggtgatcgt gccgccagtt cccgccgacg ctacaaagtg
     2941 cgtgatcctg ccttcagtct gctcccacaa ctcgggaccg gtcgtcgcgt agtgcgcatc
     3001 aggattggcc tgattgtaga actggttcgc gagaatcgcg ttgggtgtct gctccgcgat
     3061 gcgcttcgcc atcatcacgt aattgtccgg atgatccggt gcaaccgcag ttggcgtgac
     3121 gatcacttcc gcaccgaatg ctttc
//
LOCUS       DATIMD010000380         5746 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3325044, whole genome shotgun sequence.
ACCESSION   DATIMD010000380 DATIMD010000000
VERSION     DATIMD010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5746
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3325044"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1507)
                     /locus_tag="VLI40_08465"
     CDS             complement(<1..1507)
                     /locus_tag="VLI40_08465"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HSU97249.1"
                     /translation="MPDRAPVVAVAIAAAVAVIPACSGSKTARAPDSTGASAHAPAIA
                     TAPSAPMINPQDWPGYNRTLAGDRFSPLSEITRNNVTEMKAICTYNLPEVTSLQTGPI
                     VVRGTMYFTTDTISYAINAGTCTERWKQARHSAKPSALLVNRGFAYMDGRLFRGTSDS
                     HVLAMDTTDGHVLWDHVISDKAPGMSIPMAPIAADGKVFVGNAGGDQVGVTGHVYALD
                     ARDGHVVWQFDVVPDSGPARATWTNTRIPVTGGGFWTSFTFDTANKVLYVPAGNPAPD
                     FEIAVRTGDNLYTNSVIALDAATGKMLGYDQLVKRDMHDWDVDSPPTLVTTHAGLQIV
                     ASANKDGQLAVLDRSQIARGAAPNTDPGAALPVLYRMPTTTRQNIDTPLSRDHVTRFC
                     PGITGGSEWNGAAYSPNTNSLYVGAVDWCARIQLKRDTTTIPDSGATWLGNENADTFG
                     PPSEATGWLTSFDADSGTVRWKFHAPHPMLAGVTPTAGGIVFAADMSGELYA"
     gene            complement(1576..2619)
                     /locus_tag="VLI40_08470"
     CDS             complement(1576..2619)
                     /locus_tag="VLI40_08470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97250.1"
                     /translation="MKDTYIIAACATLVCMSVAGTARAQNTAPPLAEYLQSSIGLDPG
                     QIADAQNGDAVVTLLHTDIGRDVTVFGIIGIHTTRDAYIARLHDVQALIAERSQQFGI
                     ISDPVTPADMQSVALDPSEWKDLKGCRVNDCDFKLSESDMKQFAQSVNWDGPNAQQQA
                     DSVMRLQMENLVTAYRARGNAAMPRYDDTHGVQASDAFAALLSQASYIQQYAPALRNF
                     LVNFPADRPDNSLDVMYWSMDRIPRLRPTFTLNQMVVYTPPSGSALVARKQIYADHYF
                     EAALELSTIYDAPALKGGAGIYLVTIRRYRFDALPGGFLNIRGRVRSQLQKSMKSDLE
                     RERRTVEARATAG"
     gene            complement(2670..3218)
                     /locus_tag="VLI40_08475"
     CDS             complement(2670..3218)
                     /locus_tag="VLI40_08475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017504874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HSU97251.1"
                     /translation="MKASPVKRANNTMRLRQAPLATPTDLGASAVRDIAAALNGVLAD
                     VFALYLKTKNFHWHMSGPHFRDYHLLLDEQADQIFAMTDPIAERVRKLGEVTVRSIGQ
                     IARTQRVRDNDASYVEPSDMLAELREDNAALTASLRQVHNVCDEHRDVATASLIEVWI
                     DETERRTWFLFESTRNGDSSSH"
     gene            complement(3298..5019)
                     /locus_tag="VLI40_08480"
     CDS             complement(3298..5019)
                     /locus_tag="VLI40_08480"
                     /inference="COORDINATES: protein motif:HMM:TIGR00831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HSU97252.1"
                     /translation="MVEIVIFLLIIAAGLEMLSRRIGVPRPILLVIAGTLLAFVPAAP
                     TVRVDPDVVFFIFLPPLLYWAAINTSYREFRRNGVDIMLLAVGLVVATAAVVAAVAHA
                     MFAMLSWPAAFALGAAVGPTDAVAATAVMRRFGVPRTLVSILEGESLVNDATSLVIFE
                     MAVTAGDTGQFSLGPALLSFLWAAGGGIIFGLAAGWCIASLRRWIGRTSERSPVLESS
                     ISLLTPYVAFLAADRAGVSGVLAVVVAGLYLGHASARLLTAPSRIQAINMWEIVDFLL
                     EGLLFIFVGLGLPLALGAVRAGGEGTLSNLIATAAVVSVAVIVLRLAWVFPAAYAPRY
                     FRRRFTERKAPYPPWQNVFFVGWAGLRGAVSLVLALSVPFVTASGAPFPGRDVVIFVT
                     FVVILVTLVGQGLTLRPLIRVLGLEPDRADAFEETNARLQTAQAALARLAEIEARQRT
                     NETDGMETGLPPEIGNADARVVLDALRNEYTHRVHLYSNEVRTRSIPPPDPNGEPDVP
                     DDDAVEADLDGRRAGSYRALRLATLDAERQRLIRMRDEGEISDGVLHRVERDLDLEQS
                     LLTGWAG"
     gene            5099..>5746
                     /locus_tag="VLI40_08485"
     CDS             5099..>5746
                     /locus_tag="VLI40_08485"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSU97253.1"
                     /translation="MRRIGSLEVSTVGLGCNNFGGRLDEQATARVVHAALDAGINFFD
                     TADIYGSTDSERFLGRALGSRRSEAVVATKFGMRNDQVAGGAKPEYVTRAADASLERL
                     NIDRIDLFQLHQPDPSVPIADTLAAMNDLVQAGKVREIGCSNFSVEQLREAHTAVKDG
                     AAKFVSVQNQYSLLHREPEKGVLPECERLGLAFLPYFPLANGLLTGKYARGVAPPK"
BASE COUNT         1082 a         1829 c         1782 g         1053 t
ORIGIN      
        1 acgcgtacag ctcgcccgac atgtcagccg cgaacacgat cccgccggcg gtcggtgtta
       61 caccggcgag catgggatgc ggcgcgtgaa atttccaccg cacggttccg ctgtcggcgt
      121 cgaatgacgt gagccagccg gttgcttcgc tcggcggacc gaacgtgtcc gcattctcgt
      181 ttccaagcca agtcgctccc gagtccggaa tcgtcgtcgt gtcgcgcttg agctgtattc
      241 gcgcgcacca atcgaccgcc cccacgtaca gtgaattggt attggggctg tacgccgccc
      301 cgttccactc ggatccgcca gtaatgccgg ggcagaagcg cgtgacatga tcgcgtgata
      361 gtggcgtatc gatgttctgt ctcgtggtcg tcggcattct gtagagcacg ggcagggccg
      421 ctcccggatc ggtgttcggc gctgcgccac gcgcaatctg tgatcggtca aggacggcca
      481 gctggccgtc cttgttcgca gaagcgacta tctgcagtcc ggcgtgggtc gtcaccagtg
      541 tcggcgggct gtccacgtcc cagtcgtgca tgtcgcgttt cactagctga tcgtagccga
      601 gcatcttgcc ggttgcggcg tcgagggcga tgaccgagtt ggtgtagagg ttgtcgccgg
      661 tgcgtactgc gatctcgaaa tccggtgccg gatttcccgc cggcacgtac aacaccttgt
      721 tcgcggtgtc gaatgtgaac gacgtccaga atccaccgcc tgttaccgga atgcgcgtat
      781 tggtccatgt cgcccgcgcg ggcccggaat caggcaccac gtcgaattgc cagacgacat
      841 gtccatcgcg cgcatcgagt gcgtagacgt gtcccgtcac accgacctga tcgccgccgg
      901 cgttgccgac gaaaactttg ccgtccgcag cgatcggtgc catcggtatc gacatgccgg
      961 gcgccttgtc acttatgacg tgatcccaca gcacgtgccc gtcggtggtg tccatcgcca
     1021 gaacgtgcga atccgaagtc ccacggaaga ggcggccgtc catgtacgcg aatccgcgat
     1081 tcaccagcag cgcgctgggc ttggcgctgt gccgagcctg tttccaccgc tccgtgcacg
     1141 tgccagcgtt gatggcatag gagatcgtat cggtcgtgaa atacatcgtt ccacgaacga
     1201 cgatcggacc ggtctgaagc gaggtgactt cggggagatt gtaggtgcat atcgccttca
     1261 tctccgtgac attattgcgc gtgatctcgg agaggggaga gaaccggtcg ccggcgagcg
     1321 tgcgattgta gccgggccaa tcctgcggat tgatcattgg cgcgctcgga gcggtcgcga
     1381 tcgccggcgc atgcgcgctc gcgccggtgc tgtcgggcgc cctcgcggtc ttcgagccgg
     1441 aacacgcagg gattacggca accgcggcgg caatggccac ggcgactacg ggagcgcggt
     1501 ctggcatcgg atctcctccg ttggttggtg cgtcgcgcgc caaccatgca tcttggatgc
     1561 ccacgcgcga gagcgtcagc ccgccgtggc ccgcgcctcc actgtcctgc gctcgcgctc
     1621 gaggtctgac ttcatcgatt tttgaagctg gctgcggact cggccacgaa tgttgagaaa
     1681 gccgccgggc agagcgtcga accgatacct gcggatggtc accaggtaga ttcccgctcc
     1741 acccttcaat gccggcgcgt cataaatcgt cgagagctcc agggcggctt cgaagtagtg
     1801 atctgcatag atctgcttcc gcgcgaccag agcactgccc gacggtggcg tgtaaaccac
     1861 catctggttg agtgtaaagg tggggcgaag acgcggaatc ctgtccatcg accagtacat
     1921 cacgtcgagt gaattgtccg gccgatcggc ggggaagttc acgagaaaat tgcgaagcgc
     1981 aggcgcgtac tgctggatgt aggacgcctg ggagagcaga gcggcgaaag cgtcgctggc
     2041 ctgaacgccg tgggtgtcgt cataacgcgg catcgctgca ttgccgcgag cacgatacgc
     2101 cgtgacgaga ttctccatct gcagtctcat caccgagtcg gcctgctgct gcgcgttggg
     2161 tccgtcccag ttcaccgact gcgcgaactg tttcatgtcg gactccgaca gcttgaaatc
     2221 gcagtcgttc acgcgacaac ccttgagatc cttccattcc gacggatcca gcgcgacgct
     2281 ctgcatgtcg gcgggagtaa cgggatcgct gatgattccg aattgctgcg accgctctgc
     2341 gatgagcgcc tgaacgtcgt ggaggcgcgc gatatacgca tcccgcgttg tgtgtatccc
     2401 gataattcca aacacggtga cgtcgcggcc gatgtcggta tgcaacagcg tcactactgc
     2461 gtcgccattc tgtgcatcgg cgatctggcc tggatcgagg ccgatgctgg actgcaggta
     2521 ttcggccagg ggcggcgcag tattctgggc gcgcgccgta ccggcaacac tcatgcacac
     2581 cagcgtcgcg caggccgcga tgatgtatgt gtctttcatg ctcgtcatcg cggcccctgc
     2641 gaggtgctca atacctgctc agcaatcgct cagtgactgc tcgaatcccc gtttcgcgtg
     2701 gactcgaaca ggaaccaggt acgacgctcg gtctcgtcga tccacacttc gatgagactc
     2761 gccgtcgcca catcgcgatg ctcgtcgcat acgttgtgaa cctgcctaag gctcgcggtg
     2821 agcgccgcat tatcctcgcg cagctccgca agcatgtccg acggctcgac gtagctcgca
     2881 tcgttgtcgc gaactcgctg cgtgcgcgcg atctggccga tcgatctcac cgttacctca
     2941 cccagttttc tgacacgctc ggcgatcgga tccgtcatcg cgaatatctg atctgcctgt
     3001 tcatccagga gcagatgata gtcgcggaaa tgcgggccgc tcatgtgcca gtgaaaattc
     3061 ttggtcttga gatacagcgc gaagacatcc gcgagcacgc cgttcaacgc agcggcaatg
     3121 tctcgtaccg cggaagcacc gaggtccgtg ggtgtggcca gcggagcctg gcgcaggcgc
     3181 atggtgttgt tggctctctt tacaggcgac gctttcatga cttctccaga agagtttcca
     3241 cggtggtttc tactggaact tatcacccgt tcatggctcg cgggatacgc ccgactgtca
     3301 gccggcccat ccggtcagga gcgactgctc cagatccagg tcgcgctcca cccggtgcag
     3361 cacgccgtca ctgatctcgc cctcgtcgcg catccggatc aatcgctggc gctcggcatc
     3421 cagtgttgcc agacgcagtg cgcggtagga gccggcccgg cgcccatcca gatcggcttc
     3481 cacggcatcg tcgtccggga catcaggctc gccattggga tcgggcggtg ggatcgacct
     3541 cgtacgtacc tcgttcgagt aaagatgaac gcgatgcgtg tattcgttgc gcagcgcatc
     3601 gagcacgacg cgggcgtccg cattgccgat ctccggaggc aggccggtct ccatgccgtc
     3661 ggtctcgttc gtacgttgcc gcgcctcgat ctcggccagt cgcgcgagcg ccgcctgtgc
     3721 ggtctgcaat cgcgcattcg tctcctcgaa cgcatcggcg cgatccggct cgaggccgag
     3781 cacccggatc agcggacgca gtgtgagtcc ctgaccgacg agtgtaacga ggatcacgac
     3841 gaacgtcacg aagatcacca catcgcgccc ggggaacggt gcgccggatg cagtcacgaa
     3901 cggaactgac agcgcgagca cgagagatac cgcaccgcgc agccccgccc atcccacgaa
     3961 gaaaacgttc tgccatggtg gatacggtgc tttccgctcc gtgaatctgc gtcggaaata
     4021 acgtggcgcg tacgcagccg gaaacaccca tgcgagacgc agcacgatta cagccacact
     4081 caccacggct gcggtcgcga tcagattgga tagtgtcccc tctcctccgg cgcgaacggc
     4141 gccaagcgcc agcggcaggc cgagtccgac gaagatgaag agcagacctt cgagcagaaa
     4201 gtcgactatc tcccacatgt tgatggcctg aatgcgcgat ggagccgtca gcagtcgggc
     4261 agacgcgtgg cccaggtaga ggccggcgac aaccaccgca agaactcccg acacaccggc
     4321 gcgatctgcg gcgaggaatg cgacatacgg tgtgagcagc gagatactgc tctcgagtac
     4381 gggactccgc tccgacgtgc ggccgatcca gcgtcgcagc gacgcgatgc accatcccgc
     4441 cgcgagaccg aatattattc cgccacccgc ggcccacaga aagctcagca gcgccggtcc
     4501 gagcgagaac tggccggtgt cgccagcagt caccgccatc tcgaaaatca ccagcgacgt
     4561 cgcgtcgttg acgagactct ccccttcgag aatcgagacg agcgtgcgcg gcaccccgaa
     4621 ccgtcgcatc accgctgttg ccgcgaccgc gtccgtcggc ccgacagcgg cgcccagcgc
     4681 gaacgccgcc ggccatgaca acatggcgaa catcgcatgc gccactgccg caacgaccgc
     4741 agcggttgcc accaccagtc ccaccgcgag gagcatgatg tccacaccgt tccggcggaa
     4801 ctcacgatac gacgtgttta tcgcagccca gtacagtagc ggcggcagga agatgaagaa
     4861 gacgacgtcc ggatcgacgc gcactgtcgg cgccgccggc acgaatgcga gcagcgtacc
     4921 ggcgatgacg agcaggatgg gacgcggcac tccgatccgc cgcgacagca tctccagacc
     4981 cgccgcgatg atcaggagga agatgacgat ctctaccaac gctgctccgt ggctcggcgt
     5041 atgcgcaggt tatactgctc cactaaacca atgtacggta tttcatttca tgacagacat
     5101 gcgcagaatt ggatcgctcg aggtctcgac agtcggactg ggctgcaaca atttcggcgg
     5161 gcggctggat gagcaggcaa ctgcacgggt cgtgcacgcc gcgctcgacg ccggcatcaa
     5221 cttcttcgac acggccgaca tttacggcag caccgatagc gagcggtttc tcggcagggc
     5281 gctcgggagc cgtcggagcg aagccgttgt cgcaacaaag ttcggcatgc gcaacgacca
     5341 ggtcgccgga ggcgcgaagc cggagtacgt cacgcgcgcg gccgacgcaa gcctggagcg
     5401 cctgaatatc gaccgcatcg atctgttcca actgcaccag cccgatccgt ccgtgccaat
     5461 cgctgacacg ctcgcggcaa tgaacgacct cgtgcaggcc ggaaaagtgc gcgagatcgg
     5521 ctgctccaat ttttccgtcg agcagttgcg cgaggcgcac accgcggtga aggacggcgc
     5581 ggcgaagttc gtcagcgtcc agaaccaata cagccttctg catcgcgagc cggagaaagg
     5641 cgtgctgccg gaatgcgaac ggctcgggct tgccttcctt ccgtatttcc cgctggcgaa
     5701 cggcctgctg acgggcaaat acgcgcgggg cgtcgcaccg ccgaaa
//
LOCUS       DATIMD010000381         2812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3040103, whole genome shotgun sequence.
ACCESSION   DATIMD010000381 DATIMD010000000
VERSION     DATIMD010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2812
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3040103"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(173..538)
                     /locus_tag="VLI40_08490"
     CDS             complement(173..538)
                     /locus_tag="VLI40_08490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family protein"
                     /protein_id="HSU97254.1"
                     /translation="MMMLSIFRSVIFRTAGLLVCSNVFMTFAWYAHLKNLEAKPWYVA
                     AFISWGIALFEYMLQVPANRIGYTTLTLGQLKIMQEVITLSVFVPFAYFYMDQPLKMD
                     YLWAALCIVGAVFFVFRGH"
     gene            627..>2812
                     /locus_tag="VLI40_08495"
     CDS             627..>2812
                     /locus_tag="VLI40_08495"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MutS2/Smr-associated SH3 domain-containing
                     protein"
                     /protein_id="HSU97255.1"
                     /translation="MNNHALSVLEFHRVLDVVAERATSEEGAERVRALRPTTDRAWIE
                     REQSRVFATRSLVASEARWAPHAIPAARRALERLRVENATLAVADFMLLRTLLRSSRL
                     TLDSLADPRLPIAARAVLEPVTSRLVRNTNAEAAIDRVLSDDGDVRDTASPKLRGIRR
                     ELRHAESDLVALLERLMTRLDPSQQVPDMSVTVRNGRYVIPVRREGRATVGGIVHDTS
                     STGSTLFVEPPAAVEAGNRMRELASEEAIEIERILFELGDTLRPSHPGLADAFDALAE
                     LDSLYARGRMALEFNAAPVTLRDPMESFEIVGGRHPLLLAQGARVVPFDLSLDQSERT
                     FLISGPNTGGKTVLIKAIALLSLCTQAGIPPTVGEGSGIAIYDEIYADIGDEQSIAAS
                     LSTFSAHVKNLREILAGATDRSLIIIDELGSGTDPVEGAALGGAVLESLTARNARTVA
                     TTHLGALKQLAVEDPGIVNGSLQFDAIELAPTYRLIKGIPGQSYGLSIARRLGVPEAV
                     LERAEARLPVGERDVNVLLADLEARDAALAEREREAEVIANDARERARRVAEREHNAG
                     VRERESERRAREESRRYLLAARREIENTIRSLKKSENPEDTARDARRHVEELAKEQTR
                     QLDRLAERERAKRPHRAGRDATPPSVGDHVAVASLGGRVGQLMEMRDDHAIVAVGTLK
                     LSLPLSDLTRAQRPAPSLAVTIRGDVPEAHVASEIDLRGMRVGDVEG"
BASE COUNT          527 a          892 c          896 g          497 t
ORIGIN      
        1 cgcatcgcga aggaagaatt ggcggcgtcg tagggcgcgg attcatccgc gcctcgggaa
       61 tccatgttat cgatctttga atgcgctgac cgcacaacgc gggtcggcaa caaatgggtc
      121 cccgctttcg cgggatgacg agacccgatc gtcaacgtgc tctcgtccgc gttcaatgcc
      181 ccctgaacac aaagaacacc gcccccacga tacacagcgc cgcccacaga tagtccatct
      241 tcagcggctg gtccatgtag aagtacgcga acggcacgaa cacgctcagc gttattactt
      301 cctgcatgat cttgagctgc cccagggtca acgtcgtata tccgattcgg ttcgccggca
      361 cctgaagcat gtactcgaac agcgcgatcc cccagcttat aaacgccgcg acgtaccacg
      421 gcttggcctc caggttcttc aggtgggcgt accaggcgaa cgtcatgaat acgttggagc
      481 acaccaacaa tcctgcggtc cggaagatca ccgacctgaa aatcgagagc atcatcatgg
      541 gtcgcgcggg gcgcgaaagt gagccagctc caacccaccg actcttcggt gtattttcgc
      601 cgcactctgt ataattcaga agctcaatga ataaccacgc tctctctgtc ctggaattcc
      661 accgcgtcct cgacgtggtc gccgagcgcg ccacttcgga ggagggggcg gagcgcgtcc
      721 gggcactcag gcctaccact gacagggcct ggatcgagcg ggagcagtcc cgggtattcg
      781 cgacaagatc tctcgtagcg agcgaggccc gttgggcgcc gcacgccatt ccggccgcgc
      841 gccgcgcact cgagcggctt cgcgtcgaga acgcaacgct cgccgtcgcg gacttcatgc
      901 tgctccgaac gctgcttcgc agctcccgcc tgacgctcga ttcactggcg gatccgcgtc
      961 tcccgattgc tgcccgtgcg gtgttggagc cggtcacgtc gcgcctggtg cgcaatacga
     1021 atgcggaagc cgcgatcgac cgggtgctga gcgacgacgg cgacgttcgc gacaccgcgt
     1081 cgccaaaact gcgcgggata cgccgcgagc tgcgccacgc ggagtccgat ctcgtcgcgc
     1141 tgctcgaacg gctcatgacg cgactcgatc cgagccagca ggtccccgac atgtcggtga
     1201 cggttcgcaa cgggcgatac gtgatccctg tgcgccgcga aggtcgcgcg actgtcggtg
     1261 gaatcgtgca cgacacgtcg tccacaggca gtacactgtt cgtcgagccg cccgcagcgg
     1321 tcgaagcggg caatcgcatg cgcgagcttg cgtcggaaga ggcgatcgag atcgagcgca
     1381 tactcttcga actgggtgac acgctccgtc cgagccatcc gggtctggcc gacgccttcg
     1441 acgcgctcgc ggagctggat tcgttgtatg cgcgcggtcg aatggcgctg gaattcaatg
     1501 cagcgccggt cacgcttcgc gatccgatgg agagtttcga gatcgtcggc gggcgacacc
     1561 cattgctgct cgcgcagggc gcgcgggtcg ttccgttcga tctgtcgctc gatcagtcgg
     1621 agcgcacatt tctcatctcc ggtcccaaca ccggtggcaa gactgttctg atcaaggcga
     1681 tcgcgctgct ctcgctctgc acccaggccg gaattccgcc gacggtgggc gagggaagcg
     1741 gcatcgcgat ctacgacgag atctacgcgg acatcggtga cgagcaatcc atcgcggcaa
     1801 gtttgtcgac tttctcggcg cacgtaaaaa atctgcgcga gattctggcc ggcgcgaccg
     1861 accggtctct gatcatcatc gacgagctcg gttctggaac ggatcctgtc gaaggagcag
     1921 cgctcggcgg tgccgtcctt gaatcactta ccgcgcgcaa tgctcgtact gttgcgacga
     1981 cgcacctggg cgcgctcaaa cagcttgcag tcgaagatcc gggcatcgtc aacggatcat
     2041 tgcagttcga tgccatcgag cttgcaccga catacaggct gatcaaggga attccgggcc
     2101 aatcgtacgg cttgagcatc gcacggcggt tgggcgttcc cgaagcggtg ctcgagcgcg
     2161 ccgaggcgcg gctgccggtg ggcgagcgtg acgtgaacgt gctgctcgcg gatctcgagg
     2221 cccgcgacgc agcgcttgcc gagcgcgagc gtgaagctga agtgatcgcg aacgacgcgc
     2281 gcgagcgtgc acgcagggtc gccgagcgtg agcacaatgc gggcgtgcgt gagcgcgaat
     2341 ccgagcgtcg cgcgcgagag gagtcgcgca gatatctgct ggctgcgcgc cgtgagatag
     2401 agaatacgat ccggtcgctc aagaagtcgg agaaccccga agacacagcg cgcgatgcgc
     2461 gacgtcacgt cgaggagcta gccaaggagc agacccgtca gctcgatcgg ctggcggagc
     2521 gtgagcgcgc caagcggcca catcgcgccg gacgcgatgc cactccgccg tcggtgggtg
     2581 atcacgtcgc tgtcgcgagt cttggcggcc gcgttggcca gctcatggag atgcgtgatg
     2641 accacgcaat cgttgcagtc ggaactctca agctgagtct tccattatct gatctcacgc
     2701 gcgctcaacg ccccgcgcca tcgctcgccg tcaccattcg cggtgatgtg ccggaagcgc
     2761 acgtcgcgag cgagatcgac ctgcgcggca tgcgcgttgg tgacgtcgag gg
//
LOCUS       DATIMD010000382         1794 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_152046, whole genome shotgun sequence.
ACCESSION   DATIMD010000382 DATIMD010000000
VERSION     DATIMD010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152046"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1010)
                     /locus_tag="VLI40_08500"
     CDS             complement(<1..1010)
                     /locus_tag="VLI40_08500"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HSU97256.1"
                     /translation="MYERSSIARSTVIVGICTLGALALLQVADRALLPGLSPWGVRFI
                     PLIAAGIAAATAAYIIRTREQLRATAESFLRESEAHFRAIAEDVTDAIIAADHDQRIV
                     FWNAPAAQMFGYAASEVLGQSIGMLVPHERRDAHLATLRRIQQGDASATTRSVQLRAV
                     RKDGAVFVIEMSISVRTGAERIVFTAVVRDVTERMRAAQILRQHVATMRAVTEGTSDA
                     VWAKTVDGRYHLINSAGASMFGAPAHVIIGSDDTSIFGENIASVIRARDLEAITAGTP
                     IVSDATGRDANGIMRQYVTTRTPWRDTDGNVIGLIGVSRDVTEKVRAERALRTSEERY
                     RQL"
     gene            1235..1651
                     /locus_tag="VLI40_08505"
     CDS             1235..1651
                     /locus_tag="VLI40_08505"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU97257.1"
                     /translation="MTPYFHLAFPVDDLTAARSFYGDVLGCKEGRSDPAWVDFDLYGH
                     QIVAHLQPAAVGDRASSAVDGHGVPIPHFGLVMEMPDWEKLAARLKSAGVEFVIEPYV
                     RFAGLPGEQATMFVRDPAGNALEFKAFRDMSQIFAK"
BASE COUNT          305 a          584 c          559 g          346 t
ORIGIN      
        1 agctggcgat atcgctcctc gctggttctc agcgcgcgtt cggcgcgcac cttctcggtc
       61 acatcgcgcg atactccgat cagtccgatc acgtttccat cggtgtcgcg ccacggtgtc
      121 cgcgtcgtga cgtactggcg catgatgccg ttggcatctc tgcctgtcgc atcgctgacg
      181 atcggcgtgc ccgccgtgat ggcttcgagg tcgcgcgcgc gaatcacgct cgcgatattt
      241 tcaccgaaaa tcgatgtgtc gtccgaacct atgatgacgt gcgctggtgc gccgaacatg
      301 ctcgcgccgg ccgagtttat caggtgatag cggccgtcga cggtctttgc ccacaccgca
      361 tccgacgttc cctcggtcac cgcccgcatc gtcgcgacgt gctgccgaag aatctgcgct
      421 gcccgcatgc gctcggttac atcgcggacc actgcggtga acacgatccg ctctgcgccc
      481 gttctcacgc tgatcgacat ctcgatgacg aacacagcgc catccttccg tacggcgcga
      541 agctgcacgc ttcgcgtcgt ggcacttgcg tcgccctgct ggatccgcct gagtgttgcg
      601 aggtgcgcat cgcgccgttc atgcggtacg agcatgccga tcgactgacc cagcacttcg
      661 gacgcggcgt agccgaacat ctgcgcggcc ggcgcattcc agaagactat gcgctggtcg
      721 tgatcggctg cgatgatggc gtcggttacg tcctccgcga tcgcgcggaa gtgagcctcc
      781 gactcgcgga gaaacgactc agcggtcgct cgcagctgct ctcgtgtgcg aatgatgtac
      841 gcggcggtgg ccgccgcgat tccggcagcg atcagcggaa tgaatcgcac gccccacggc
      901 gacaggccgg gcagcagcgc gcggtccgcg acctggagca gcgccagagc cccgagcgta
      961 cagattccta cgattacggt ggagcgagcg atcgaggatc gttcgtacat ggagtgggat
     1021 tgtatgcgcg ggcgcgccgc tctatcggct cgtcctcgct tgagtatcgg cgccagactg
     1081 atgtcgatgt agcggccggc ggaaccgcaa acgcccgaac ggataccgaa gctcgctccc
     1141 gaccgcgcct tgcgcaaggc gtccgccctc gtcaaccttc aaccgcgaca cgcactctcg
     1201 cgtatcaacg gaacatcttc aaccgaccca gcccgtgacc ccttactttc atctcgcatt
     1261 tccggtggac gacctcaccg cggcgcgcag cttctatggc gacgtactcg gctgcaagga
     1321 gggacgcagc gatcccgcat gggtcgattt cgatctgtac ggccaccaga tcgtggctca
     1381 cctgcagcct gcggcggtag gcgaccgtgc ctcgagcgcc gtggacggcc atggcgtgcc
     1441 gattccacac ttcggcctcg tcatggagat gccggactgg gagaagcttg ctgcaagatt
     1501 gaagtcggcc ggagtcgagt tcgtaatcga gccgtacgtc cgcttcgctg gcctcccggg
     1561 tgagcaggcg acgatgttcg tgcgagatcc ggccggcaat gcgctcgagt tcaaggcctt
     1621 ccgcgacatg tcacagatct tcgcgaagta gggcgcagat ttattcgcgc cgctcgtcat
     1681 tcccgcttac gcaggtgcgt aagcgggaat gacgagagtg cgctagacga tcggcggaag
     1741 attgtgccgc ttcactgttg cgtcgaatgt cgcaacggag gacgcgacaa cggc
//
LOCUS       DATIMD010000383         3194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5353992, whole genome shotgun sequence.
ACCESSION   DATIMD010000383 DATIMD010000000
VERSION     DATIMD010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3194
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5353992"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..617)
                     /locus_tag="VLI40_08510"
     CDS             complement(<1..617)
                     /locus_tag="VLI40_08510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97258.1"
                     /translation="MTDNLVRLRRRLTVWYAVTLGTIVVLLGAGLFIAIRRQISSQLD
                     ASLAMATDAIQRATSIREAEQASASGAVMDAVGELRIPDRDLYLFDRAAKPLVPSTAP
                     VAIVDAARTALRDSATLVTLYPPNDHVLRVSAVRFRSRAGHIYVSVAVADQLELEDQY
                     ANLILAFGAAALGALVLFAAGGSFLTRKSIEPVERTMNYMRRFMA"
     gene            complement(614..1282)
                     /locus_tag="VLI40_08515"
     CDS             complement(614..1282)
                     /locus_tag="VLI40_08515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSU97259.1"
                     /translation="MRVLLVEDDPELSAVITDGLHNEHIEVSAAHDFATGRERALLGT
                     FDVIVLDVLLPGGTGFDLCRIIRERGIATPILMLTARDAVEDRVRGLESGADDYLTKP
                     FAFMELTARIRALARRRPAIAPEHYDVADLHVDIPTREVTRGGVRITLTAKEFSLLEF
                     LIQHAGNVVTRSAITAHVWDDNHDPFTNVLEVLVRRLRRKIDDGFEPKLIQTLRGAGY
                     RLGV"
     gene            1421..2575
                     /locus_tag="VLI40_08520"
     CDS             1421..2575
                     /locus_tag="VLI40_08520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HSU97260.1"
                     /translation="MQDTRPPLTTLSEDELMFRDAVAAFAATEVAPRVKAMERAGKID
                     PALIPQYFELGLMGIEVDEKYGGSGGALMMVTLAVEELSKVDASAAIVCDVQNTLVNY
                     PIARYGTEEQKSRYLGMLTSGTLGSYALSESGSGSDAFALATRAEKRGDSYVLNGRKL
                     WITNGAEAGLYVVFANVDPAAGYKGITAFIIERDFPGFDVGKKEDKLGIRASSTVELL
                     LDNCEVPAANVLGPVGQGYKIAIETLNEGRIGIGAQMIGVAQGALNAAIAYIKERQQF
                     GKALADMQAIQFQVAQAATEIEAARLMVYNATRLKDAGHDIAREGAMAKLYSSQVCGR
                     VTSLCVELFGGYGYTTDYPVEKFFRDAKIGTIYEGTSNMQLQTIAKAVLR"
     gene            2728..>3194
                     /locus_tag="VLI40_08525"
     CDS             2728..>3194
                     /locus_tag="VLI40_08525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family peptidase"
                     /protein_id="HSU97261.1"
                     /translation="MFTSKSIEFLKQLLDTPGPSGFEGAPAKVWRAEASKFAEVTADV
                     AGNSMAVVNPSGSPTIMLAGHIDEIGVIVTYVDDDGYAYIAPIGGWDPQVLVGQRIRF
                     SGRHGDVVGVVGKIPIHIIRPEEREKGARMRDLWVDVGARDKKECLTMLSVGDP"
BASE COUNT          638 a          948 c         1009 g          599 t
ORIGIN      
        1 tcagccatga agcgacgcat gtagttcatg gtgcgctcca ccggctcgat cgattttcgc
       61 gtaaggaatg agccgccagc cgcaaacaac acgagcgctc cgagcgccgc tgcgccgaaa
      121 gcaaggatga gattggcata ctgatcttcc agctccagct ggtcagcgac tgcgaccgat
      181 acatagatgt ggccggcgcg cgagcggaat cgcacggcgg acacgcgcag cacgtgatcg
      241 ttcggaggat acagcgtgac gagagtggcg gagtcacgta atgcagtccg ggcggcgtcg
      301 acgatcgcta ccggcgcggt ggacggaacc aacggcttcg cggcgcgatc gaacaggtac
      361 aggtcgcgat cgggaatgcg aagctcgcca acggcatcca tgacggcgcc ggatgcggat
      421 gcctgttcgg cttcacgaat gctcgtggct cgctgaattg catccgtcgc cattgcgagt
      481 gacgcgtcca gctgtgacga gatctgccgt cgtatcgcta tgaagagacc ggcaccgagc
      541 agtacgacga tcgtcccgag cgttaccgcg taccagacgg tgagacgcct tcgaaggcga
      601 acgagattgt cagtcaaacg ccgagcctgt aacccgcgcc gcgcagcgtt tgtatcagct
      661 ttggctcgaa gccgtcgtcg atcttgcgcc ggagccgtcg caccagaacc tccagcacat
      721 tcgtgaacgg atcatgattg tcgtcccaga catgtgccgt tatcgcgctg cgcgtcacga
      781 cgttgccggc atgttggatg agaaattcga gtagcgagaa ttccttggcc gtaagtgtga
      841 ttctgacccc gccgcgcgtt acttcgcggg tcggaatgtc gacgtggagg tcggccacgt
      901 cgtagtgctc gggagcgatt gccggacggc gtcgcgccag cgctctgatt cgggccgtga
      961 gctccatgaa cgcgaacggt ttcgtgagat agtcgtccgc gccggattcg agtccgcgca
     1021 cgcgatcctc gacggcgtcg cgagctgtga gcatcagaat cggcgtcgcg atcccccgct
     1081 cgcggatgat gcggcaaaga tcgaagccgg tgcccccagg cagcaggacg tccagcacga
     1141 tgacgtcgaa ggtgcccaac agggcccgct cgcgtccggt agcgaagtca tgcgccgcgc
     1201 ttacctctat gtgctcgttg tgcaggccgt cggtgatgac ggccgaaagc tctggatcat
     1261 cttccacgag aaggacacgc atgtgatctc ggctgcggta aggcccgcga aataccgtcg
     1321 cgggcgaccg gactttcacc tatactatac ggcgcgcgtt tctcacgacc tgagaattgc
     1381 gcctgaacca cccgttactc actgcccgaa catgccgaca atgcaagata cccgtccgcc
     1441 gctgacgacg ttatccgagg acgagctgat gttccgcgat gccgtggccg ccttcgccgc
     1501 caccgaagtc gcgccacgcg tcaaggctat ggaacgcgcc ggaaagatag atcccgccct
     1561 catcccgcag tacttcgagc ttggactgat gggaatagaa gtcgatgaga agtacggcgg
     1621 atccggtggt gcgctaatga tggtcacgct ggctgtcgag gagctgtcaa aggtcgacgc
     1681 gtcggctgcg attgtctgcg acgtgcagaa cacgctggtc aattatccca tcgcgcgcta
     1741 cggcacggaa gaacagaagt ccagatatct gggcatgctc accagcggca cacttggctc
     1801 ctacgcgctc tccgaatccg gttccggctc cgacgctttc gcgctcgcga cccgtgccga
     1861 aaagcgcggc gattcgtatg tgctgaacgg tcgaaagctg tggatcacca acggtgcgga
     1921 ggcgggactg tacgtggtat tcgccaacgt cgatcccgcc gctggctaca agggaatcac
     1981 ggcgttcatc atcgagcgcg atttccccgg gttcgacgtc ggcaagaagg aagacaagct
     2041 cggcatccgc gcatcctcca cggtggaatt gctgctcgac aactgcgagg ttccggccgc
     2101 gaacgtgctg gggcccgtgg ggcagggata caagattgca atcgagacgc tcaacgaagg
     2161 ccgcatcggg atcggcgcac agatgatcgg cgtcgcgcag ggcgcgctga acgcagcgat
     2221 tgcatacatc aaggagcggc aacagttcgg caaggcgctg gccgacatgc aggcgatcca
     2281 gttccaggtt gcgcaggccg caaccgagat cgaggcggct cggctcatgg tctacaatgc
     2341 aacgaggctc aaggacgccg gccatgacat cgcgcgagag ggggcgatgg cgaagctgta
     2401 ttcatcgcag gtctgtggtc gcgtcacgtc gctctgcgtc gagctgttcg gcgggtacgg
     2461 ctacacgacc gactatccgg tcgagaagtt tttccgcgat gccaagatcg gcaccatcta
     2521 cgaagggacc tccaacatgc aattgcagac gattgccaag gcggttcttc gttaatccgg
     2581 tgttgcgcgc gatcgccgct gtaaacattt gagtgtctca ttctttgaga ctccgcccct
     2641 agctgccgat ctttcaggga tggaaacgtc tttaactgac acgccccgtt cgcggtatgc
     2701 ggccggggcg tggtaaatta tccgaccatg tttacctcaa aatcgatcga atttctcaag
     2761 cagcttcttg acactcccgg cccgtcgggc ttcgaagggg cacccgcaaa ggtctggcga
     2821 gccgaggctt cgaagttcgc cgaggtcacg gcagacgttg ctggcaattc gatggcggtc
     2881 gtgaacccgt ctggatcgcc gacgatcatg ctggctgggc atatcgacga gatcggtgtc
     2941 atcgtcacgt acgtcgacga cgacggctat gcctacatcg ctccgattgg tggctgggat
     3001 ccgcaggttc ttgtgggcca acgcattcgg ttcagcggcc gccacggcga cgtggtcggc
     3061 gtcgtcggaa agatcccgat ccacatcatt cgccccgagg aacgcgagaa gggtgctcgc
     3121 atgcgcgatc tgtgggtcga cgtgggagcg cgcgacaaga aggaatgcct gaccatgctc
     3181 tcggtcggcg atcc
//
LOCUS       DATIMD010000384         9066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1599439, whole genome shotgun sequence.
ACCESSION   DATIMD010000384 DATIMD010000000
VERSION     DATIMD010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9066
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1599439"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1561)
                     /locus_tag="VLI40_08530"
     CDS             complement(<1..1561)
                     /locus_tag="VLI40_08530"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97262.1"
                     /translation="MPVGLFIARRLLLAGTLVSGAGLVSPVVARAQVTTSDPAAPVLA
                     DYQWRNIGPGSPGGRITDVEALDTNFRFVIAAAASGGVWKSTNAGTTWTPIFDHYGSS
                     SIGDIKIFQPDPRILWVGTGEANNRNSVAWGDGIYKSTDGGKTFTNVGLRNTFQIARI
                     VTHPRSPDTVYVAAIGNLWAATGDRGVFKTTDGGKTWDKLAGGLPNDPGIGATDIVMD
                     PSDPNVLYAAFYQRQRLPWRYNAGSTDGGIFKTTDGGKTWAKLTTGLPAGETGRIGLD
                     VYHRNPKILMAIVEAKPGSENLATAGSGIYRSEDGGASWTYLNRYNNRPFYYSQIRIN
                     PSDDQLVYVLTTSFQWSTDGGRTFEAARAPFGPNYDHHAMWIDPAHKDRFYLGKDKGL
                     TLTHDNGSSFIFFDNLPIMQAYKVAVDMRTPYAIYAGLQDNGTIGTMSFTRDALGIRN
                     DAAWKLHWDDGQYVAVDPRDWRTVYSEGTQASFRVVDPIGHTDTDRRITEARIVNFKD
                     VAPPVKAGDPLP"
     gene            complement(1552..3126)
                     /locus_tag="VLI40_08535"
     CDS             complement(1552..3126)
                     /locus_tag="VLI40_08535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97263.1"
                     /translation="MRKLIPAFALLIAGCQDLAVTDPNAPDRARATKAPVSAETFVAS
                     SFRTWWPVAGHGNYPSWAFSTVAHDVTSGFADFGQLEISTEPRSAWNNSPVNTQNSVN
                     QRPWYDLYSTISTVNDALVAIDSGLVIGDAARTTRTRAVGKFMQGVSHGYLGLYFDSA
                     FVATEKLALDTITTPQFQPYPEVIKAAISQLDTSIAISKTANFTLPGDSWMFAAMDQN
                     GLARLANSFAARLLAYSPRTRAQRDAVDWNEVIRRIDAGITTDFAPTAQPNILWDDWQ
                     RLAARVRSGPPSDYGRPSYWLLGPADSTNGFQTWINTPLTSRQPFQLVTKDRRIQGAA
                     GPTAIGKYIGYNKSSIGAASRGTYRYSYYYYVRNGTGTSWQNGPIPDMTRTEMDLLKA
                     EALIRLGRASEAVPLINKTRVANGQLPPVTIDGPPNEAGCVPRKLNGQCGSLWDALRY
                     EKGIENYGVNGVIAYFDARGWQTLPENSIVQLPVPGAELATLRRPLYTYGGAGNPGSA
                     PAPDPEKCPVPLARCQ"
     gene            complement(3147..6287)
                     /locus_tag="VLI40_08540"
     CDS             complement(3147..6287)
                     /locus_tag="VLI40_08540"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSU97264.1"
                     /translation="MRLYRRAWYSGLAMSLFAALAPGLAGAQQAANPTSRVTGVVTDS
                     VGNHPVAGVQVTVTGGRLGAITDAEGRYTINGVAPGTHTIDARRRGFKPLTRPGIVVN
                     AGAATTLNLQIVSVPLMLEAVVSTGVVDPTSGTRVPFTVGRVDAENAPVPAANAVETI
                     QGKIAGVTVVPSGQPGTGTNIVLRSPTSINKSNSPLIVVDGVILSQAFDGSTADLESL
                     DIESVEVVKGAAAASLYGSRASSGVIQIRTKRGASLPEGPTHITVRSEIGTSSIANKK
                     HWAKYNYYMVDSAATTYLNAVGAPVNRAARVPKPIFSRFQDSRYPDPTYDQIQRFFDP
                     GQTYKNSVTMAQNGGRTNWLLSLVNSSQDGVVLNAGTYGQNDVRLNLDHQLRDDWRIS
                     FSGFGSRSKRRDLNGNTFFQLINQAPDVNLLQPDPDGTPYIFQPDPEGREPNPLYVLA
                     TQFRERKSARTLGSLASHYGPLSWLSFDADVSYDRSDRNISYFLDQGLKSPTFGSAGD
                     PGEISQTQGTTDALNASTSANLLGHYKALTLRSTLRALIEREDNSVVVADGTNFAAPG
                     VRSLDNAQNRFVSSTLESVRSTGYFGTLGANYGDRYIFDGLIRHDGSSLFGPEERWHK
                     YYRWSGAWRMASESWWPFKGLINEFKPRVSRGTAGGRPSFADQFETFDFTTGGGLEKN
                     TLGNKALKPELSTETEFGLDMIMKDRYSVQLSYAKNKVTDQLIQIPLPGFYGYTTQWQ
                     NAGTVEGNTVEATFQAQILRGPKLTWQLGLVADRSRNRITEFDRSCFTTNTIAYRCAG
                     STLGSMYGFSFLKQAAGLPTGSQARAAEFQTNDDGLLVWVGPGNTFKEGETKKLWGTS
                     TTIGTNNYGWGMPILQQDANGNTAVRKIGDGTPRFHYGISNNVGWHDLTFYTLLDVNV
                     GGNAYNQTNQRMYQYGRSSDVDQAGKPQEDKKIVDYYVNLYSANNPVDYFVEDAGFVK
                     LREISVRYQLPRSFSGALSKVGASGASLSLIGRNVLTWTRYKGYDPEVGTPNVRLDSF
                     DYPRYRTFTSSVEINF"
     gene            complement(6445..>9066)
                     /locus_tag="VLI40_08545"
     CDS             complement(6445..>9066)
                     /locus_tag="VLI40_08545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97265.1"
                     /translation="IGNAFTSNPERGVFRTKDGGKTWDKVLFVSDSTGAADVEFQPGN
                     SKVVYASMWQGVRKPWAILSGGHEGGLYKSIDGGDHWTKMAGGLPSGLFGKSNIAVTA
                     ANPNRVYALIEAKPGGGLYRSDDAGEHWSLTSSNPQLITRPFYYTTLAADPTNADVVY
                     GGAENFYKSTDGGRNFKSVRVPHGDNHDMWISPKDGNVMIQANDGGANVSLDGGRTWS
                     TQFNQPTAEIYAVSIDNQFPYRLYGAQQDNTTLIVPSLPLNSGQEEEWRGGPGCETGP
                     IMPHITNPDTVYGSCKGQFSRMSLRTGQEKQYWVGAQSLYGSVPGDLIYRFQRVSPME
                     LSPHDSHVIYYGSQYVHRTRDEGVTWERISPDLTAHDPRYLNAVSGGPITRDVTGEEV
                     YATLYVIRESPLQKGLIWTGSNDGPVYVTRDNGKTWTNVTPKDLPPGGRVQTIDPSPH
                     RPGSAYIAVYRYLLGDFSPYIYRTDDYGKSWTRLTDGTNGIAKDEPTRVVREDPSRAG
                     LLYAGTEFGMYVSLDNGGHWLPFQFNLPATPITDINVHQKDLVLSTQGRSFWIMDDLT
                     PLHQWSDAIASSSAHLFKPRDAYRMHYRANPVSISARGNSASAPQYPQAGAMIDYYFA
                     KEPQGEVKLDILDASGKVVRTFTTAAANERARESQVSEEQDEDAPRRRGGPVNITKHE
                     GMNRFTWDLGYPGPRQSATRPAGGGGPTAVPGTYKVRLTVAASGSDAAWTETQPLVVK
                     PDPRITHDGVTIADMQEQFDHNMRVRDLVTDVNLAVARIREARTRLKGATGAAADTLQ
                     QLDAIAAKLETPPIRYSKPELQGNITYLYGMTNGADQKIGRDAVERYHTLRSALDVQL
                     AELKKLLGPAQAGGTGR"
BASE COUNT         1665 a         2730 c         2756 g         1915 t
ORIGIN      
        1 gcggaagtgg atcacccgct ttcacgggcg gcgcgacgtc cttgaagttg acgattctcg
       61 cttcggtgat gcgacgatcc gtatcagtgt gtccgatcgg atcgaccacg cggaacgatg
      121 cctgcgtacc ttcggaataa acggtgcgcc agtcgcgtgg atcgacggcg acgtactggc
      181 catcatccca gtgcagcttc cacgcagcgt cgttgcgaat accgagcgca tcgcgcgtga
      241 agctcatcgt tccgatcgtg ccgttgtcct gcaggcctgc gtaaatggcg tatggtgtgc
      301 gcatgtcgac tgccaccttg tacgcctgca tgatcggcag attgtcgaag aatatgaacg
      361 acgatccgtt gtcatgcgtg agcgtcagac ccttgtcctt gccgaggtag aagcgatcct
      421 tgtgtgccgg atcgatccac atcgcatgat ggtcgtagtt ggggccgaac ggtgcgcgcg
      481 ccgcttcgaa cgtcctgccg ccgtcggtcg accactggaa gctcgtcgtg agcacgtaca
      541 cgagctgatc gtcggaggga ttgatgcgga tctggctgta gtagaacggt ctgttgttgt
      601 agcgattgag gtacgtccag ctcgcgccgc cgtcctcgct gcgatagatg ccggaaccgg
      661 ctgtggcaag attctccgag ccaggcttcg cctcgacgat cgccatgaga atctttggat
      721 tcctgtgata cacgtcgagc ccgatacgtc cggtctcacc tgctggtagt ccggtcgtga
      781 gctttgccca cgtctttcca ccgtccgtcg tcttgaagat tccgccgtca gtgctgccgg
      841 cgttgtaccg ccacggaaga cgctgacgct gatagaacgc tgcgtagaga acgttcggat
      901 cgctgggatc catgacgata tccgtagcgc cgatcccggg atcattcggc aatccgccag
      961 caagcttgtc ccacgttttt ccgccatccg tggtcttgaa tactccgcga tcgccagtcg
     1021 ccgcccagag atttccgatc gcggcaacgt aaaccgtgtc cggacttctc ggatgggtga
     1081 cgatgcgtgc aatctggaac gtgttgcgca gcccgacgtt cgtgaacgtc ttgccaccgt
     1141 cggtcgactt gtagatcccg tcgccccacg caacgctgtt gcggttgttc gcttcaccag
     1201 tgcccaccca caggatgcgt ggatcgggct ggaatatctt gatgtcgccg atcgacgacg
     1261 atccgtagtg atcgaagatc ggcgtccatg tcgtgcctgc gttggtgctc ttccagacac
     1321 cgcccgacgc agcagccgcg atcacgaacc ggaagttcgt atccagtgcc tcgacgtcgg
     1381 tgatgcgtcc acctggagag ccgggaccga tgttgcgcca ctgatagtcc gcgagcaccg
     1441 gtgcggccgg atcggacgtc gtcacctgcg cgcgcgcgac aacgggtgaa accagtccgg
     1501 cacctgaaac aagcgtgccg gccagcaaca ggcgccgcgc tatgaaaagt cctactggca
     1561 tcgtgccaac ggcacggggc acttctccgg atccggcgca ggtgcgctgc ccggattgcc
     1621 tgctccaccg tacgtgtaga gtggacgacg cagcgttgcc agctcagcac cgggaactgg
     1681 aagctgaacg atgctgttct ccggcaacgt ctgccatcct cgtgcgtcga agtacgcgat
     1741 cactccgttg acgccgtagt tctcgattcc cttctcgtag cgaagagcgt cccacagact
     1801 gccgcactgt ccattcagct tgcgtggcac gcagccagcc tcattcggcg gtccgtcgat
     1861 cgtcacgggt ggaagttgtc cgttcgcgac gcgcgtcttg ttgatgagcg gtacagcctc
     1921 gctcgcgcgg ccgagtcgga tcaatgcctc tgccttcaac aaatccattt ctgtacgcgt
     1981 catgtcgggg atcggaccgt tctgccagct cgtaccggta ccattccgga cgtagtagta
     2041 gtacgagtaa cggtacgtac cacgacttgc ggctccgatc gacgacttgt tgtagccgat
     2101 gtacttgccg atggctgtcg gaccggctgc accctggatg cgacgatctt tcgtgaccag
     2161 ctgaaacggc tgccggctcg tgagcggcgt attgatccac gtctgaaatc cgttcgtcga
     2221 gtcagccggc cccagcagcc agtagctggg ccgtccataa tcactcggcg gtccgctacg
     2281 aacacgcgca gctagacgct gccagtcatc ccacagaatg ttcggctggg ccgtcggtgc
     2341 gaaatccgtc gtaatgcccg cgtcgattcg acggatcact tcgttccagt ccacagcatc
     2401 gcgttgggca cgcgtgcgcg gtgagtaggc gagcagtcgc gctgcgaagg aattcgcgag
     2461 tctcgccaga ccgttctgat ccatggcggc gaacatccac gaatcgcccg gcagcgtgaa
     2521 gttggcggtt ttggaaatcg cgatcgaagt gtcgagttgg ctgatagctg ccttgatcac
     2581 ttccggatac ggctggaact gtggcgtcgt gatcgtatcg agcgcgagct tctcggtggc
     2641 gacgaacgcc gagtcgaagt agagaccgag gtatccgtgc gaaacgccct gcatgaactt
     2701 gccgacggcg cgggtacgcg tcgtgcgcgc tgcgtcacca atgacaagac ccgaatcgat
     2761 tgcgacgagg gcgtcgttga ctgtcgagat cgtgctgtac agatcgtacc acggcctctg
     2821 attgacgctg ttctgagtgt tgacgggact gttgttccac gccgagcgtg gctccgtcga
     2881 aatctccagc tgaccgaagt cggcgaatcc tgacgtaacg tcgtgagcca ccgttgaaaa
     2941 tgcccatgac ggatagttgc catggccagc aacaggccac catgtgcgga acgagctcgc
     3001 gacgaacgtc tcggcggata ccggggcctt tgttgcgcgc gcgcggtccg gcgcgttcgg
     3061 atcggtaacc gcaaggtcct gacatcctgc aatcaacagc gcgaacgctg gaatgagctt
     3121 tctcatgtcg tatctccggg tcgccatcag aagttgatct cgacgctgct ggtgaatgtt
     3181 ctgtagcgcg ggtagtcaaa gctgtcgagg cgcacgttcg gagtaccaac ctctggatcg
     3241 tagcccttgt acctggtcca ggtgagaaca ttgcgaccga tgagcgacag cgacgcgccc
     3301 gatgcgccaa cttttgagag cgcaccggag aaactccgcg gaagctgata gcgcaccgag
     3361 atctcgcgca gcttcacgaa tccggcgtcc tcgacgaagt aatcgaccgg gttgttcgca
     3421 gagtacagat tcacgtaata gtccacgatc ttcttgtctt cctgcggctt gcctgcctga
     3481 tcgacgtcgc tgctgcgtcc gtactggtac atgcgctggt tggtctgatt gtaggcgttg
     3541 ccgccgacat tgacgtccag aagcgtgtag aacgtcagat catgccagcc gacgttgttc
     3601 gagattccgt agtggaagcg tggcgtaccg tcgccgattt tccggaccgc agtgttgccg
     3661 ttcgcgtcct gctgcaggat cggcattccc catccgtaat tgttcgtgcc gatcgtcgtg
     3721 ctcgttcccc agagcttctt tgtttcgcct tccttgaacg tgttgccggg gccaacccag
     3781 acaagcaacc catcgtcgtt cgtctgaaat tctgctgcgc gtgcctgcga gccggttgga
     3841 agtccagcgg cctgcttgag gaaagagaaa ccgtacatcg agccgagcgt cgagccggcg
     3901 caacggtaag cgatcgtgtt ggtcgtgaag caggagcgat cgaactcggt gatccggttg
     3961 cgtgagcgat cggcgacgag cccgagctgc catgtgagct tgggcccgcg aaggatctgc
     4021 gcctggaacg ttgcctctac ggtgtttcct tccacagttc cggcgttctg ccactgtgtc
     4081 gtgtagccgt agaaaccggg cagcggaatc tgaatgagct gatccgtaac cttgttcttc
     4141 gcgtacgaca actgcaccga gtagcgatcc ttcatgatca tatcgagacc gaactcggtc
     4201 tccgtcgaca gctcaggctt gagcgccttg ttgccgagcg tgttcttctc gagaccaccg
     4261 ccggtggtga agtcgaacgt ctcgaactgg tcggcgaagc ttggccggcc gcctgccgtt
     4321 ccacgcgaga cacggggctt gaactcgttg atcaacccct tgaacggcca ccacgattcc
     4381 gacgccatgc gccacgcgcc gctccagcgg taatacttgt gccagcgctc ttcgggtccg
     4441 aacagcgagc tgccgtcatg acgaatgagg ccgtcgaaga tgtagcggtc gccgtagttg
     4501 gcaccgagcg ttccgaagta tccggtcgag cgcacactct cgagcgtcga cgagacgaaa
     4561 cgattctgtg cgttgtccag actgcgaacg ccgggtgcgg cgaagttggt gccatccgca
     4621 acgacgacgg aattgtcctc acgctcgatg agcgcgcgca atgtgctacg cagagtcaac
     4681 gccttgtagt ggccgagcag gttcgcgctg gtagatgcat tcagcgcgtc ggttgtccct
     4741 tgtgtctggg aaatctcacc cgggtcgccc gcagatccga acgtcggaga cttgagaccc
     4801 tgatcgagga aatacgagat attacgatcc gatcgatcgt agctgacgtc cgcgtcgaag
     4861 ctcagccatg acagcgggcc gtagtggctc gcgagacttc cgagtgtacg cgcgctcttg
     4921 cgctcccgga attgtgttgc gagtacatac agcggattcg gctcgcggcc ttctggatcc
     4981 ggctggaaga tgtatggcgt tccgtccgga tcgggttgaa gcagattcac gtccggggcc
     5041 tgattgatga gctggaagaa cgtgttgccg ttgagatcgc ggcgcttgga tctgcttccg
     5101 aatccgctga acgagatgcg ccagtcgtcg cgaagctggt gatccagatt cagtctcacg
     5161 tcgttctggc cgtaggtgcc tgcgttcagc accacgccgt cctgactgga attgacgagc
     5221 gacaacaacc agttcgtgcg gccgccattc tgtgccatcg tcacggaatt cttgtacgtc
     5281 tgacccggat cgaagaaacg ctggatctgg tcgtacgtcg gatccggata gcggctgtcc
     5341 tggaatcgcg agaagatcgg cttcggaacg cgcgctgcac gattcactgg tgcacccacg
     5401 gcgtttagat acgtcgtcgc tgcggaatcg accatgtagt agttgtactt ggcccagtgc
     5461 ttcttgtttg cgatcgagct cgttccgatc tcgctgcgga ccgtgatgtg cgtcggccct
     5521 tccggcagac ttgcaccacg cttggtgcga atctgaatca cgcccgagga tgcgcgcgag
     5581 ccgtacagcg acgccgcggc ggcgcccttg acgacttcga cgctctcgat gtcgagcgac
     5641 tcgagatctg cagttgaccc gtcgaatgcc tgactgagga tcacgccgtc cacgacgatg
     5701 agcggtgagt tggacttgtt gatgctcgtc ggtgaccgca gaacgatgtt agttcccgtg
     5761 cccggttggc cactcggcac caccgtcaca ccggcaatct tgccctgaat ggtttcgacg
     5821 gcgtttgcag ccggcaccgg tgcattctcc gcgtccacgc ggccaactgt gaacggaaca
     5881 cgtgtaccgc tggtcggatc gacgacaccc gtgctcacaa ccgcttcgag catgagcggc
     5941 accgatacga tctgaagatt cagtgtcgta gcggcgccgg cattgacgac gatgccggga
     6001 cgcgtcagcg gtttgaagcc gcggcgacgc gcgtcgatcg tgtgcgttcc gggcgcgaca
     6061 ccgttgatcg tgtagcggcc ttcggcatca gttatcgcac ccaggcgtcc gccagtcacc
     6121 gtcacctgaa ctccggcaac gggatgattc cctacggaat cagtgacgac accggtgacg
     6181 cgtgaagtgg gattggcagc ctgctgcgcg ccggccaggc cgggagcgag tgcggcgaat
     6241 agcgacatcg cgaggccgga ataccaagct cgacgataca acctcattga cctgctcctg
     6301 gctatggctg gttcgggacc ggaccgcgga gcaggaggaa acaaatgttg ttcctcctgc
     6361 tcgcaacgac cggcgggact cagcgctcaa acttcaccag ggtaccacgt aagatcaaga
     6421 ttgtataaag attttatgca tggattatcg ccccgtacct ccggcttggg cgggaccgag
     6481 caactttttc agctcggcga gctgaacatc cagcgccgac cgcagcgtgt gataccgctc
     6541 cacggcgtca cgcccgatct tctgatcggc cccgttggtc atgccgtaca gataggtgat
     6601 gttgccctgc agctccggct tgctgtaacg gatcgggggc gtttcgagct tcgccgcgat
     6661 ggcatcgagc tgttgcagcg tgtctgccgc agcgcctgtg gcgcccttga gccgagtgcg
     6721 tgcttcgcga attcgtgcga ctgcgagatt cacgtccgtc acgagatcgc ggacgcgcat
     6781 gttgtgatcg aattgctcct gcatgtcggc gatcgtcaca ccgtcgtgcg tgatgcgcgg
     6841 atccggcttg acgaccagcg gctgcgtctc cgtccacgcg gcatcgctcc ccgatgctgc
     6901 gacagtgagg cgcaccttgt acgtgcccgg cactgcagtg gggccaccac cacccgccgg
     6961 acgcgtcgcg ctctgacgcg ggcccgggta gccgaggtcc cacgtgaaac ggttcattcc
     7021 ctcgtgcttc gtgatgttga ccggaccacc gcggcggcgc ggcgcgtctt catcctgctc
     7081 ctcactgacc tgtgattcac gcgcacgctc gttcgcggcg gcagtggtga atgtgcgcac
     7141 caccttcccg cttgcgtcga gtatgtcgag cttcacttcg ccctgcggct ccttcgcgaa
     7201 gtaatagtcg atcatcgcac cagcctgcgg atattgcggc gcagacgcgc tgttcccacg
     7261 cgcagatatt gaaaccgggt tggcgcggta atgcatgcga tatgcatcgc gcggcttgaa
     7321 gagatgcgcg ctggacgatg caatcgcgtc gctccactga tgcagcggag tgagatcgtc
     7381 catgatccag aacgaccggc cctgcgtcga caacacgaga tccttctggt gcacgttgat
     7441 gtcggtgatc ggcgtcgccg gcaggttgaa ctggaacggc agccagtgac caccgttatc
     7501 gagcgacacg tacataccga attccgtacc tgcatacagc agaccggcgc gcgacggatc
     7561 ttcgcgcaca acgcgcgtcg gctcgtcctt cgctattccg ttcgttccgt cggtgagacg
     7621 cgtccacgac ttgccgtaat catcggtgcg atagatatat ggcgagaaat ctccgagcag
     7681 ataacgataa acggcgatgt acgcagagcc cgggcggtgc ggcgatggat cgatcgtctg
     7741 cacacgacca ccgggcggta gatccttcgg tgtgacgttg gtccacgtct tcccattgtc
     7801 gcgcgttacg tagaccggac cgtcgttgga gccggtccag atcaatccct tctgcaatgg
     7861 agactcgcgg atcacgtaca gagtggcgta cacttcctcg cccgtcacgt cgcgcgtgat
     7921 cggaccaccg ctgaccgcat tgaggtagcg cggatcgtgc gccgtgagat ccggactgat
     7981 tcgttcccat gttacgccct catcgcgcgt gcgatgtacg tactgagaac cgtagtagat
     8041 cacgtgcgaa tcgtgcggcg acagctccat cggcgacacc cgctgaaaac ggtagatgag
     8101 atcgcccggg acgctgccat acagagattg tgcgccgacc cagtactgct tttcctgacc
     8161 cgtgcgcagc gacatgcggc tgaactggcc cttgcacgat ccgtaaaccg tatcgggatt
     8221 ggtgatgtgc ggcatgatcg ggccggtctc gcaaccgggt ccgccgcgcc attcctcttc
     8281 ctgtccactg ttgagcggca gactcggcac aatcaacgtc gtgttgtcct gctgagcgcc
     8341 gtagagtcga tacggaaact ggttgtcgat cgacaccgca taaatctcgg cggtgggttg
     8401 attgaactgc gtggaccagg tgcgtccgcc gtcgagcgag acgttcgcgc cgccgtcgtt
     8461 cgcctggatc atcacgttgc catccttggg actgatccac atgtcgtggt tgtcgccgtg
     8521 gggcacgcgt accgacttga agtttctgcc accgtcagtg gacttgtaaa aattctcggc
     8581 gccgccgtaa acgacgtctg cgttggtggg atctgcagcg agcgtcgtgt aatagaacgg
     8641 acgcgtgatg agttgaggat tggagctggt gagcgaccag tgctcgcctg cgtcatcgga
     8701 gcgatacaga ccaccgcctg gcttcgcttc gatgagtgca tacacacgat tcgggtttgc
     8761 cgcagttacc gcgatgttgc tcttgccgaa aaggcctgac ggaagaccgc ccgccatctt
     8821 cgtccagtga tcaccgccgt cgatgctctt gtagagaccg ccttcgtgac cgccgctcag
     8881 aatcgcccac ggcttgcgca caccctgcca catcgacgca tagacgacct tcgaattgcc
     8941 aggctggaat tcgacatccg ccgcaccagt gctgtccgag acgaacagca ccttgtccca
     9001 cgttttgccg ccatccttgg tgcgaaagac accgcgctcc ggattggagg tgaacgcgtt
     9061 tccgat
//
LOCUS       DATIMD010000385         3783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2461594, whole genome shotgun sequence.
ACCESSION   DATIMD010000385 DATIMD010000000
VERSION     DATIMD010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3783
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2461594"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(218..1006)
                     /locus_tag="VLI40_08550"
     CDS             complement(218..1006)
                     /locus_tag="VLI40_08550"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSU97266.1"
                     /translation="MNTMMKVLKYQARDAIRSRWLIAYALFFLVVAYALLRFSGDPVK
                     AQLSLVSIVLFVVPLIAIVFGTVYLYNAREFVELILAQPVDRRQTYCGLYLGLTLPLI
                     VAFVAGLSVPFVLNGLDASAWGRLAALIVAGVVLTCVFTAIATSIAVKCEDRLRGLGA
                     AIGVWLLVTIVYDGFVLLVLAVLSDFPLERATLGLMMANPIDIARVGLLLRFDGAAMM
                     GYTGAVFLKFFSGPAGMIVTTLALTAWVVAPIAFGVRVFQKKDF"
     gene            complement(1003..1734)
                     /locus_tag="VLI40_08555"
     CDS             complement(1003..1734)
                     /locus_tag="VLI40_08555"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU97267.1"
                     /translation="MTRPILQIMSVCKRFGALDTLRSVDLTVNAGRVVAIVGPNGAGK
                     TTLIKSVLGLTRPDAGRITLMGTDVLGANAYRAAIGYMPQIARFPENLTGAELIALLK
                     DLRGPAAQLDTELIDCFGIEEALEKPLRVLSGGTRQKVNAAMAFLFSPELLILDEPTA
                     GLDPLSSSVLKDKILVERGAGKTIMVTSHIMNELEELADDVAFMVDGRMAFAGTLDDL
                     KRVTAQTTMERAVAAMMMRDFREAA"
     gene            complement(1731..3008)
                     /locus_tag="VLI40_08560"
     CDS             complement(1731..3008)
                     /locus_tag="VLI40_08560"
                     /inference="COORDINATES: protein motif:HMM:TIGR04247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase family maturation
                     protein NosD"
                     /protein_id="HSU97268.1"
                     /translation="MRNSRKLRRGAAALVLSLGAITTPGLAAPVRVAQQVVNVSPVGP
                     VRSIRQALTMVARGGTIIVHPGVYRDSTIVVSLPVTIIGEKHPVLDGEGMRQIMTVTA
                     DSVTVRGIAFRNVGVAFTEDLAAIKVVRARYCSIADNRIDNGFFGIYLQEAQYCAVLR
                     NVIRGTRSSDATSGNGIHLWHSRDIVIQGNQVSGHRDGIYFEFVRATHVHDNVSTGNL
                     RYGLHFMFSDSCDYEGNTFRRNGAGVAVMYTHNVRMVGNHFTDNTGAAAYGLLLKEIS
                     DSELRDNIFSGNTSGLYADGATRLNAHHNTFINNGWALKLQSSTEDASFTANNFAGNT
                     FDVSTNSRSANSTFRGNYWSEYQGYDLNRDGVGDVLYRPVRLTSVVVARYEPALILLR
                     SNFLLLMDAAERVLPALTPETLADSAPAMRWVK"
     gene            complement(2995..3600)
                     /locus_tag="VLI40_08565"
     CDS             complement(2995..3600)
                     /locus_tag="VLI40_08565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97269.1"
                     /translation="MSRLTRMLTAIASLALAGLFVLPLWRVQLVAPQYPEGLGMKIGI
                     SDVRGVMPTDLDNINGLNHYIGMKHITPAAIPELRYMPWIVAGLILLGLIAAGVGSRK
                     LLLTWIGGFTVLAIAGLIDFWRWEYDYGHNIDFDHAIIKIPGMTYQPPLIGVKQLLNF
                     TAISWPDTGAWVALAAFGIGMLAVATTFKQRGPAAHGHAQQ"
BASE COUNT          807 a         1146 c         1086 g          744 t
ORIGIN      
        1 agttcgacga cgaccacctt gccggtcggt gcagccacgt cgcccgccgg agccgatgac
       61 tgtgacgatg ccgctggcgc ttccgactcg cctgcaccct tcttttcgcc accaccgcac
      121 gcaccgatcg ccaatagcga aagtgcaata aggctcgact tgatccctga gtgattcaca
      181 attctatccg gtaagattgt tgttaggtga ctacgcatca gaagtccttc ttctggaata
      241 cacgcactcc gaatgcaatc ggcgcgacga cccatgcagt cagagcgagg gtggtgacga
      301 tcatccctgc ggggccgctg aagaatttga ggaatacggc gcccgtgtaa cccatcatcg
      361 cggctccgtc gaacctcagt agcaggccga ctcgcgcgat gtcgatcggg ttggccatca
      421 tcagtccgag ggtcgcacgc tccagcggaa agtccgacag aacagcgagc accagcaaca
      481 caaatccgtc gtacacgatg gtgacaagca gccacactcc gatcgcggct cccagaccgc
      541 gcaagcgatc ttcacacttg acggcaatcg acgttgcgat ggccgtgaag acgcatgtga
      601 gcaccacgcc ggcaacgatg agtgcggcaa gcctgcccca ggccgacgcg tcgagcccgt
      661 tcagaacgaa tggcacggaa aggccggcaa cgaacgcgac gatcaacgga agcgtaaggc
      721 caagatagag accgcaatat gtctgacggc gatcgacggg ctgcgcgaga atcagctcga
      781 cgaattctcg cgcgttgtag agatataccg tcccgaagac tatggcgatc agcgggacca
      841 cgaatagtac gatgctaacc agactgagct gagcctttac gggatcgccg ctgaatcgta
      901 gcagcgcata ggccaccacg agaaagaaaa gtgcataggc gatcaaccac cggctccgga
      961 tggcatctct cgcctgatac ttgagaacct tcatcatcgt gttcatgctg cctcccgaaa
     1021 gtcgcgcatc atcatcgccg cgaccgcccg ttccatggta gtctgcgccg ttacacgctt
     1081 gagatcgtcg agcgttccgg caaacgccat gcgtccgtcg accatgaacg cgacgtcgtc
     1141 agccagctct tccagctcgt tcatgatgtg cgatgtgacc atgatagtct tgcccgctcc
     1201 acgctccacc agaatcttgt ccttcaacac gctgctggag agcgggtcga ggccagcggt
     1261 cggctcatcc aggatcagca actcgggcga gaagagaaac gccatggctg cattgacttt
     1321 ctgtcgagtt ccgccggaca gaacgcgcag aggtttctcc agggcctcct cgattccgaa
     1381 acaatcgatg agctccgtgt ccagctgtgc tgcgggtccg cgcagatcct tcagcagcgc
     1441 aatcaattcg gcgcccgtaa gattttccgg gaaacgcgcg atctggggca tgtagccgat
     1501 ggcagcgcga taagcgttcg cgccaagaac atcggtgccc atcagtgtaa tgcgtcctgc
     1561 gtccggacgg gtaaggccga gcaccgattt gatcagtgtg gtcttgccgg caccgttcgg
     1621 gccaactatc gcgaccactc taccggcgtt gacagtgaga tctaccgagc gcagggtgtc
     1681 gagtgcaccg aatcgcttgc acacgctcat gatctgaagt attggtctgg tcattttacc
     1741 catcgcatgg ccggcgcgga atctgccagc gtttcaggag tgagagccgg cagcactcgc
     1801 tcggcggcgt ccatcaacag caggaagttg ctgcgaagca gaatcaacgc aggctcatat
     1861 cgcgcgacca caaccgacgt gagccgtacc ggacggtaca gcacgtctcc cacaccgtcg
     1921 cgattgagat cgtaaccctg atactcggac cagtagttac cgcgaaaggt cgagtttgcc
     1981 gagcgactgt tggtgctcac gtcgaaggta ttgcccgcga agttattggc cgtgaacgag
     2041 gcatcttcag tgctggactg gagcttgagc gcccagccgt tattgatgaa agtgttgtga
     2101 tgtgcgttca atcgggtcgc cccatcggcg taaagccccg acgtattacc ggagaagatg
     2161 ttgtcccgga gctcgctgtc ggatatctcc ttgagcaata atccgtacgc ggcggcaccg
     2221 gtgttatcgg tgaagtgatt gccgaccatc cgcacattgt gcgtgtacat gaccgccaca
     2281 ccggcaccat tgcgccggaa tgtgttgccc tcgtagtcgc agctgtcgga gaacatgaag
     2341 tgaaggccgt atctcaggtt gcccgtgctg acgttgtcat gaacgtgagt cgcgcgaacg
     2401 aactcgaaat agattccgtc gcgatgaccc gacacctggt ttccctggat gacgatgtcg
     2461 cgtgagtgcc acaagtggat gccgttgccg gacgtggcat cgctcgagcg agtaccgcgt
     2521 atgacgttgc ggagcaccgc gcagtactgc gcttcctgca gatagattcc aaagaaccca
     2581 ttgtcgatcc ggttgtcggc tatcgagcag tagcgtgccc ggacaacttt tatagcggcg
     2641 agatcttcgg tgaatgcgac acccacgttc cggaatgcaa tgccgcgcac cgtgacgcta
     2701 tcggcggtca cggtcattat ctggcgcatg ccctcaccat cgagcaccgg gtgcttctca
     2761 ccaatgatgg ttaccgggag agacaccact atcgtggagt ccctgtacac tccgggatgc
     2821 acgatgatcg taccgccgcg cgcgaccatc gtcagcgcct gtcgtatgct gcgcaccggc
     2881 ccgactggtg acacgttgac gacttgctgt gcgacgcgca cgggtgccgc cagccctggt
     2941 gtggtaatag caccaaggct caacaccagc gcggccgcac cgcgacgcaa cttcctactg
     3001 ttgcgcatgt ccatgagcag ccggaccgcg ctgcttgaat gtcgtggcta ctgccagcat
     3061 ccctattccg aacgcagcca gtgcgaccca cgcaccggta tccggccatg atatcgccgt
     3121 gaagttgagc agctgcttca cgcctatcaa cggaggctgg taagtcatcc ccgggatctt
     3181 gattatcgcg tgatcgaaat cgatgttgtg gccatagtcg tattcccaac gccagaaatc
     3241 gatcagcccg gcaatcgcaa gcacggtgaa tccaccgatc caggtgagca gcaactttct
     3301 gctgcccaca ccggcggcga tcaggccaag tagtatcagg ccggcaacga tccacggcat
     3361 gtaccgcagc tcgggaatcg ccgccggtgt gatgtgcttc ataccgatgt aatggttcag
     3421 accgttgatg ttatccagat ccgtcggcat gactccgcga acgtcgctga tcccgatctt
     3481 catccccaat ccctccggat actgtggcgc gaccagttgg acgcgccaca gtggaaggac
     3541 gaagagtcct gcaagagcga gcgatgcgat cgcggtgagc atgcgagtca ggcgcgacat
     3601 ctttctacct gcgctcgcca cgttcggcat gctcgccgtg ttccgcgggc atgcggccgt
     3661 tctgagtctg tgcgaccttg cttatgttcg ccgacagtgc aacgtgcagc tccggtgcgg
     3721 acacccgaac gtatccctgc atctcctgat gcagcgccga gcagaaatcg gtgcagtaga
     3781 acg
//
LOCUS       DATIMD010000386         2835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5354791, whole genome shotgun sequence.
ACCESSION   DATIMD010000386 DATIMD010000000
VERSION     DATIMD010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2835
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5354791"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..1694
                     /locus_tag="VLI40_08570"
     CDS             120..1694
                     /locus_tag="VLI40_08570"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSU97270.1"
                     /translation="MARSGGATVLITLADVEPAVRLNALLEAAGITTSMVSAVDNLAA
                     EIRRMRPELIVLTGNIADPAVRQVVRDQLWEGIAVIGLADVADPQLIERLRAIGFVDV
                     YTKPVVAEDLFDAVKRVLERRRLAESTGLVGQSDAIREVLVRVEQMAPVSSTVLIEGE
                     SGTGKELVARAIHQLSPRRARPFIAVNVGALPETLLESELFGHEKGAFTGAAERRIGR
                     FELADTGTLFLDEIGDIPPATQVKLLRVIEEREVTRVGGTTPIKVNVRVVTATNQPLR
                     QLVEEGRFRSDLYYRLNVLSIYLPPLRERRADIPLLVRRFVRQFSAQHDRPFHGISAD
                     AMQIMADYAWPGNVRQLKNLIESMVVLAPGREITASDIPVEVRERSSLLPVRIAPPVM
                     RGGEGSGGAGARELEFIVHSLVELRLQLDELRRRVDENSISAGQSATAGGAETRSLAP
                     VVGALEPAAPPAPNVWTVTPGMTMAEIERGAIEAALRETGGNRRRAAELLGIGERTLY
                     RKLREYDIPDGYATIA"
     gene            1895..2611
                     /locus_tag="VLI40_08575"
     CDS             1895..2611
                     /locus_tag="VLI40_08575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97271.1"
                     /translation="MIRTLPGVVSVRVVDNGEGSIQEVHILTTSEVPAKQTVRNVESA
                     LFAHLGLRIDHRRVSIAAVSEAPPPQPKPAPPPTSTPSPIVPPKSRSAADTEGMGVYT
                     PTPGLDGPRRRIYFEDVEVRGSRARGVSCRVSLIKDGTSFIGEARGVDGDRARLELAA
                     RAACLAIGDADSKDRQFGLEGVRVFEAFDRKFIFVGVAVRHGREVRLLAGTCEVSDSA
                     ETASVLAVLDATNRWLEYGA"
BASE COUNT          518 a          765 c          991 g          561 t
ORIGIN      
        1 tcccggttcg ccatatggcg tgcgcgatgg actcgccact ctggaccccg tcgtatcgca
       61 cgcatgcgac gttctgagcg gacgtttcac ggatcattcc gccgagcagc ggagcataga
      121 tggcacgtag cggaggcgcg accgttctga tcacgctggc ggacgtcgag cccgcggtgc
      181 gtctcaacgc gttgctcgaa gctgccggta taacgacgtc gatggtttcg gcggtggaca
      241 atctcgccgc cgagattcgg cgcatgcgac cggagctgat cgtgctcacc ggaaacatcg
      301 ccgatcctgc tgtacggcag gtcgtgcgcg accagctatg ggaaggaatc gccgtgatcg
      361 gcctcgcgga cgttgcggat ccgcagctga tcgagcggtt gcgcgcgatc ggttttgtgg
      421 atgtgtacac caagccagta gtcgcggaag atctgttcga tgcggtgaag cgcgtgctcg
      481 agcgtcgccg actcgccgag tcgaccggtc tggtcgggca gtcggacgcg atacgcgagg
      541 tactggtgcg cgtggagcag atggcgccag tgtccagcac ggttctgatc gaaggcgaga
      601 gcggcaccgg aaaggaactt gtcgcgcgcg cgattcatca gctgagtcct cgtcgcgcgc
      661 ggccgttcat cgctgtgaac gtcggcgcgt tgcccgagac gttgctcgag agcgagctgt
      721 tcggtcatga gaagggtgcg ttcacggggg cggccgagcg tcgcataggg cgttttgagc
      781 ttgccgatac gggaacgctg ttcctggatg agataggcga cattccgcct gctacgcagg
      841 tgaagctgtt gcgcgtgatc gaggagcgtg aagtgacgcg agttggcgga actacaccga
      901 tcaaggtcaa cgtgcgcgtg gtgacagcga ccaatcagcc gctgcgccaa cttgtcgagg
      961 aagggcgttt caggtcggac ctgtattaca ggctcaacgt cctcagtatc tatctgccgc
     1021 cactgcgcga gcgtcgcgcc gacattccgc tgctggtgcg tcgttttgtg cggcaattct
     1081 ccgcgcagca tgaccggccg ttccacggta tctcggcgga tgccatgcag atcatggccg
     1141 attatgcgtg gcccggcaac gtccggcagc tcaagaatct gatcgagagc atggtggtgc
     1201 tggcgcccgg ccgggagatc acggcgtcgg acataccagt cgaggtgcgg gagcggtcga
     1261 gtttgctgcc cgtgaggatc gcgccgccgg tgatgcgtgg tggggagggg agcggcggtg
     1321 ccggggcacg ggagctggaa ttcatcgttc acagcttggt cgagctgcgg ctgcagctgg
     1381 acgagttgcg ccgtcgggtg gacgagaaca gcatttccgc cggccaatcg gctaccgcgg
     1441 gaggcgcgga aacgcgatcg ctggctccgg tcgtgggagc gctcgagccc gcggcgccac
     1501 ccgcgcctaa tgtttggaca gtaacgccag gaatgacgat ggcggagatc gagcggggtg
     1561 cgatcgaggc cgcgttgcgc gaaactggtg ggaatcggcg tcgagctgcc gaacttctgg
     1621 gtataggtga gcggacgcta taccggaagt tgcgagaata tgacatcccg gatggctacg
     1681 ccactattgc ctaaaacggc atgtggccac actttgtgat ggccgccaac agggggagaa
     1741 tatgtcctct cttggcgggc ttgtgtctta taggtcatct atagccggat ggcatctgcg
     1801 ggggcgacta tcgtctcgcg tagccaaact ctagttcctt aaacgcgtga ctacatttgt
     1861 gacgcccgca cggctcgggg agcaagccga agaattgatc cgcaccctgc ctggtgtggt
     1921 ttccgtgcgt gtagtggaca atggggaagg gtcgattcag gaggtgcaca tcctgacgac
     1981 ctccgaggta cctgcgaagc agaccgttcg caacgttgag agtgccctgt ttgcgcacct
     2041 gggcttgcga atcgaccatc gccgcgtgtc gatagcagcg gtgagcgagg cgccgccgcc
     2101 acagccgaag cctgcgccac cgccaacgtc cacgccgtcg ccgattgtgc ctccaaaaag
     2161 ccggagcgct gccgatactg aaggaatggg tgtttacacg cctacgcctg ggttggacgg
     2221 accgcgtcgc cggatctatt tcgaggatgt ggaagtccgc ggatcgcggg cgcgcggagt
     2281 atcgtgccgg gtgtcgctga tcaaggatgg aacgtcattt attggcgagg cgcgcggagt
     2341 cgatggagac cgcgcgcgct tggagttggc agctcgcgca gcgtgtctcg cgattggaga
     2401 cgctgattcg aaggaccggc agttcgggct cgaaggtgtg cgcgtgtttg aagcatttga
     2461 cagaaagttc atcttcgttg gcgttgcggt gcgacacgga cgtgaagtcc ggttgcttgc
     2521 tggaacgtgc gaagtgagtg atagcgcgga gacggcgtcg gtactggccg tgttggatgc
     2581 aacgaaccgt tggttggagt acggcgcgta gctggaggcg tgaccgaatg cttacctcga
     2641 gacgacttat agactaatca agacaaaacc cccgttcccc gacctagcgg agttgagacg
     2701 gtaggttagg caggaacgag cggagccaac ctttgcagtt tgcacgcgcg caagcgtcgt
     2761 gacaaaacgg atgggaggtg acgcggacat gagtttcttt gcagcttttt ttgtcgctat
     2821 gttttcgggc ggcgg
//
LOCUS       DATIMD010000387         3761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4777626, whole genome shotgun sequence.
ACCESSION   DATIMD010000387 DATIMD010000000
VERSION     DATIMD010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3761
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4777626"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(33..1991)
                     /locus_tag="VLI40_08580"
     CDS             complement(33..1991)
                     /locus_tag="VLI40_08580"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSU97272.1"
                     /translation="MTEPESLPNRPDDALRAQLGRVLEANYELDQEIGRGGMGIVYRA
                     RDRRLKRLVAVKVLPPELAYRADIRSRFLREAETSAQLSHPSIVPIYTVEEADNLVFF
                     IMGYVNGDTIAQRLRQRGPMAPEEARRILCEVADALAYANARNVVHRDIKPDNILLDS
                     DSGRAMVTDFGIARAVSEGNDTRLTTTGLAIGTPAYMSPEQCAGDRGVDGRSDIYSLG
                     VVGYQMLSGDLPFVASNTPGMFVKHLTEQPRPISERVQNLPQDLGAIIMRCLAKEPSD
                     RFPTATALVDALNGRTQTLGIPSSSPYQPRQPAEPIRTQQMSRPQTPVRPTYNPSRAV
                     EMARWEAAPVRAYRKKVITWLAVSAPFILLGIFGDHSFFFFDAVWGATIAVGYTKLWN
                     RGYDWRDVFRQPRDALFADVVNERIDDARALFDPQKREVARERLRARMRDGSGLTSFS
                     PMPSGLASESMHGMTGFHSTISADVVERYPIVQEAAVARADIQRMMNGLSDDERKLVP
                     DVASSADSLYVRIEQLVSAIDNMDRANVPGMGDAIEREIGELEAEANPLEEEASEGRV
                     RRLVQLRRQRVSLREMRNRRAAADNKLNRAISAMRQLRMDVGRLSTGTRSYDSVTQVA
                     EQAVAIGKEVDAVLYAQDEMARVLRRDS"
     gene            2122..>3761
                     /locus_tag="VLI40_08585"
     CDS             2122..>3761
                     /locus_tag="VLI40_08585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HSU97273.1"
                     /translation="MAGSIRSLDPLPLGVHDESDNSIMAQRQTIPVLPLRGTVMFPGL
                     TSPISAGRPGTLRAIESALKADRLVFAVAQRDNSDEPTADILYSMGVIARIGQIQRGL
                     GGVQLLLQGEQRATALQYTMTEGFLSAVVVPAEEMNPVDENDAAFEALEKETRERAGE
                     LGEKRGLPEEVVHQVLESVTEPGRFADLVAGYIDLPVAEKQGLLETLSVEERLRRVLV
                     QVQRQIEMLEAQEDIKSQVQEELGERQREMYLREQMKAIQKELGDGDSSKEVEELREK
                     LSKLRLPKEGRAEVERELGRLERSGRESMEAQVIRTYLEWITELPWNDRSNDDLDLKH
                     ATEVLDADHYGLQDVKDRVLEFLAVRQLRAQQLAQEVKETGAVPADRLRVEKDEATPS
                     LAEEPELEPITDEKEVKSRAMAKGPILLFVGPPGVGKTSIAKSIAHSLGREYVRIALG
                     GARDEADIRGHRRTYVGAMPGRILQGMKQAGTKNPVFLLDEVDKLGVSYQGDPSSALL
                     EVLDPAQNDSFTDHYLNIPFDLSEVLFIATANFIQNIPG"
BASE COUNT          737 a         1162 c         1171 g          691 t
ORIGIN      
        1 cattcaaaga gagaacggcg cccgtgcgcc ggtcagctat cacgccggag gactctcgcc
       61 atctcgtcct gcgcatacag cacggcgtcc acttccttgc cgatcgcgac cgcctgctcc
      121 gccacctgcg taacgctgtc atacgagcgc gtaccggtcg acagacggcc gacatccatg
      181 cgaagctgcc gcatcgcgct gatcgcgcga ttcaacttgt tgtcagccgc agcgcgccga
      241 ttgcgcatct cgcgcagcga cacacgttgc cgacgaagct gaacaagtcg acggacacgc
      301 ccctcgcttg cctcttcttc cagcggattc gcttccgctt ccagctcgcc gatctcgcgc
      361 tcgatcgcgt cgcccattcc gggcacgttc gcgcgatcca tgttgtcgat cgcggagacc
      421 agctgctcta tgcggacgta aagtgaatcg gcggacgacg ccacgtccgg aacaagcttg
      481 cgctcgtcgt cggacaggcc gttcatcatt cgctggatgt ccgcgcgtgc gaccgcggct
      541 tcctgcacga tcgggtagcg ctcgacgacg tccgcggaaa tggtggaatg aaatcccgtc
      601 atgccgtgca tggattccga cgcaagaccg gacggcatcg gcgagaagga cgtgagtccg
      661 cttccatccc gcatgcgcgc acgcagccgc tcgcgcgcga cctcacgctt ctgtgggtcg
      721 aacagcgcgc gagcatcgtc gattcgctcg ttcaccacgt ccgcgaagag cgcgtcgcgc
      781 ggctggcgaa atacatcgcg ccagtcgtag ccgcgattcc acaacttggt gtagccgacg
      841 gcgatcgtcg caccccagac agcatcgaaa aagaagaacg aatggtcgcc gaaaatgccc
      901 agcagaatga acggagcact gacagcgagc catgttatga ctttcttgcg atacgcgcga
      961 accggcgccg cctcccagcg tgccatctcc acggcgcgcg atgggttgta agtcggccga
     1021 accggtgttt gcggccggct catctgctgc gtgcgtatcg gctccgctgg ctggcgcggc
     1081 tggtacggcg aactggacgg aataccaagc gtctgtgtcc ggccgttgag cgcatccacc
     1141 agtgcggtcg ctgtcgggaa ccgatcgctc ggctccttcg ccagacaacg catgatgatc
     1201 gcgccaaggt cctggggcag gttctgaacg cgctcgctga tcggacgcgg ctgctccgtg
     1261 agatgcttca cgaacattcc gggcgtgttc gatgcgacga acggaagatc gccggacagc
     1321 atctgatagc caactacacc aagcgaatag atatcgcttc ggccatcgac gccacgatcg
     1381 cctgcgcatt gctccggcga catgtaagcc ggcgttccga tcgcaagacc ggtagtggtg
     1441 agccgcgtgt cgttgccttc gcttaccgcg cgcgcaattc cgaaatccgt caccatcgcg
     1501 cgaccgctgt cggaatcgag caggatgtta tccggcttga tgtcgcggtg tacaacattg
     1561 cgtgcgttcg cgtatgcgag cgcgtcggcc acctcgcaca gaatccgccg cgcttcttca
     1621 ggcgccatcg gaccgcgctg tctcaggcgt tgggcaatcg tgtcaccgtt gacgtatccc
     1681 atgatgaaga agacgagatt gtcggcctct tcaacggtat aaatgggaac aatcgacgga
     1741 tgactcagct gtgcagatgt ttccgcctcg cgcagaaagc gcgaacgaat gtccgcacga
     1801 tatgcgagct cgggcggaag aacctttaca gcaacgagac gtttgagtcg gcgatcgcgg
     1861 gcgcggtaaa caatgcccat gcccccgcgg ccgatctcct gatcgagctc gtagttggcc
     1921 tcgagcacac gacccaactg tgcgcgtagc gcatcgtcag gccggtttgg cagactttcg
     1981 ggctcggtca tacgtcagac cggcatgcta ccataaagaa tcctgccgtg ctggcgtgga
     2041 acttggtgcg cggaatatgc aatttagcgt catcgggcgg ttgcgcgtta gacacgcgat
     2101 acggctcacg gtttgcgcca aatggcaggt tcgatcagat cgctcgatcc actgccgctc
     2161 ggcgtccacg acgaatccga taattccatc atggcacaac gtcagactat tcccgttctt
     2221 cctctgagag ggacggtcat gttccccggc ctcacctcgc ccatctcggc gggccgcccc
     2281 ggaaccttac gagcaatcga gtcagccctc aaggccgacc ggctcgtttt cgccgtcgcg
     2341 cagcgcgata acagcgacga gcccacggcg gacattcttt attctatggg cgtcatcgcc
     2401 cggatcgggc agatccagcg tggcctgggc ggggtgcaac tcctgctcca gggcgagcaa
     2461 cgcgccactg cccttcagta caccatgacc gagggcttcc tgagtgccgt ggtcgttccc
     2521 gccgaggaga tgaacccggt cgacgagaac gacgcagcgt tcgaggcgct cgaaaaggag
     2581 acccgggagc gggccggcga gcttggtgag aagcgcggcc tccccgaaga ggtcgtccat
     2641 caggtcctgg aatcggtcac cgagccaggg cgtttcgccg acctcgttgc cggctacata
     2701 gaccttccgg tagcagaaaa gcagggcctg ctcgagactc tgagcgtcga ggagcggttg
     2761 cgccgcgtgc tggttcaggt gcagcgccag atcgagatgc tggaggccca ggaggacatc
     2821 aagtcgcagg tccaggaaga gctgggcgag cggcagcgcg agatgtatct ccgcgaacag
     2881 atgaaggcga tccagaagga gctgggcgac ggagactcct ccaaggaagt cgaggagctc
     2941 cgcgagaagc tttccaagct ccgtcttcca aaggaaggcc gagccgaagt cgagcgcgag
     3001 ctcggccgat tggagcggtc cggccgggag tcgatggagg ctcaggtcat ccgtacctat
     3061 ctggaatgga tcaccgaact gccttggaac gatcgttcga atgacgatct cgatctcaag
     3121 catgcgaccg aggttctgga cgcggatcac tatgggcttc aggacgtgaa ggatcgcgta
     3181 ctcgagttcc tggcggttcg ccaactcagg gcgcagcagc ttgcgcaaga ggtcaaggag
     3241 accggggcag tacctgcgga caggctgcgc gtcgagaagg acgaggcaac gccgtcgctc
     3301 gccgaggagc cggaactgga gccgatcacg gatgaaaagg aggtcaagtc gcgcgctatg
     3361 gcgaagggac cgattcttct gttcgtcgga ccgcccggtg tcggcaagac gtcgatcgcc
     3421 aagtcgattg cacactcgct cggacgcgaa tacgtacgca tcgcgttggg tggtgcgcgt
     3481 gatgaggccg acattcgcgg acatcgtcgc acgtacgtcg gtgcgatgcc gggccggatt
     3541 ctgcagggga tgaagcaggc tggcaccaag aatcctgtct tcctgctgga cgaggtggac
     3601 aagcttggcg tgtcgtatca gggtgatccg tcgtcggcgc tgctcgaggt tctcgatcct
     3661 gcgcagaacg actcgttcac ggatcactat ctcaacatcc cgttcgatct gagcgaggtg
     3721 ctgttcatcg caaccgcgaa cttcatccag aacattcccg g
//
LOCUS       DATIMD010000388         2601 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4484196, whole genome shotgun sequence.
ACCESSION   DATIMD010000388 DATIMD010000000
VERSION     DATIMD010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4484196"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            323..952
                     /locus_tag="VLI40_08590"
     CDS             323..952
                     /locus_tag="VLI40_08590"
                     /inference="COORDINATES: protein motif:HMM:NF014618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease family protein"
                     /protein_id="HSU97274.1"
                     /translation="MTFRSGNDDVHMDSQGADNPPPAAGMTGPVFHRYLPVMALLEVE
                     VMRLGLDRTSNAYVVILREKDGERLLPIWIGQPEAESIVIEMHQIHRERPLTHDLCKN
                     IITQLGATLMRVSVTRIVARTYHAELQLASRDGSVVVDARPSDGIALALRFNAPIFVS
                     EELLTSAVLDESETLAELQVDPEFRPMSPEQLKAYLENLRPEDFGKFRL"
     gene            933..1898
                     /locus_tag="VLI40_08595"
     CDS             933..1898
                     /locus_tag="VLI40_08595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97275.1"
                     /translation="MASFGSRIFGALVALSFAVVCGAQEGSSVSGRVVKPGGDSVVAV
                     ADAWVTLHRVGTDHAGPVDSTHTNGSGHYTFHYKRTGAGDAIYFVSSSHDGVAYFSHP
                     LNAGDESGDDGEIVVFDTTSRHVPMTIRGRHLIVSRAAADGLRTVTEVFELSNDTSVT
                     RIAPNESDAAAVWSSGLPSGAGTPVVADGDIPAAAVRFANSRALVYAPFAPGMKQLAF
                     HYDLPADAFPLKIPFEHSTVVFEVLVEDPTGTASGAKLAAVAPVAIEGHEFHRYLASD
                     VPANSVAVISVPEVKQPPALLFVAGLTLLIGGAMTVTLARALRRR"
     regulatory      1936..2051
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            2184..>2601
                     /locus_tag="VLI40_08600"
     CDS             2184..>2601
                     /locus_tag="VLI40_08600"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSU97276.1"
                     /translation="MRFAAALVSPHRSTLRIRISACAAYAACAACATLAILAASCTPD
                     ATRTATASLGATNTTATNPSSVARDDFGRAIPFAIRPHRVVSLNPTTTEVMFAIGAGT
                     LLVGRSHWDDWPDSARTIPDMGNGISPNVEKIVAAHP"
BASE COUNT          464 a          798 c          832 g          507 t
ORIGIN      
        1 tcatcacggc gctggatctt cgcaagccga tctatacgcc gactgcgtca tacggccact
       61 tcgggcgcac gcccgagaag atcggacgcg ggcgcaatgc ggcgactctg ttcacgtggg
      121 agcggacgga tcgcgcggcg gcgctgaaga aggcagtgta gggaagccgg cgttacgatt
      181 ggggcgagcc gggctcgcga agactcgtca ttcccgcgaa agcgggaatc catgttatcg
      241 atctttgagt gcaatggtag ctcaaacctg atcggcagca gatggattcc cgctttcgcg
      301 ggaatgacgt tccgtagcgg gaatgacgtt ccgtagcggg aatgacgacg tgcacatgga
      361 ttcccaaggc gctgacaatc cgccccctgc agcagggatg acgggccccg tcttccaccg
      421 ttatcttcca gtcatggcac tgctcgaagt cgaggtgatg cgcctcgggc tggatcggac
      481 ttccaacgct tacgtcgtga tcctccggga gaaggatggc gagcggttgc tgcccatatg
      541 gatcggccag cccgaagcgg agtcgatcgt gatcgagatg catcagatcc accgcgagcg
      601 tccgctcacc cacgatctgt gcaagaacat catcacgcag ctgggcgcga cgctgatgcg
      661 cgtgagcgtc acgcgcatcg tcgcgcggac ctaccacgcg gagctgcaac tggccagtcg
      721 cgacggaagt gtcgtggtcg acgcgcgccc gtccgacggt atcgcgctcg ctctgcgctt
      781 caacgcgccg atcttcgtga gcgaagaact gctcacgagt gcggtgcttg acgaatcgga
      841 gacgcttgcc gagctgcagg tcgatcccga gttcaggccg atgtcgccag agcagctcaa
      901 ggcatatctc gagaacctca ggccggaaga ttttggcaag tttcggctct agaatcttcg
      961 gcgcgctcgt cgcgctatcg tttgcggttg tctgcggcgc tcaggaaggc tcgagcgtgt
     1021 cgggtcgcgt cgtgaagccc ggcggcgatt cggtcgttgc agtcgcggac gcgtgggtga
     1081 cgctgcatcg cgtgggcacc gaccacgccg gcccggtcga ctcgacgcat accaacggat
     1141 cggggcatta cacgttccac tacaagcgca ccggagcggg tgacgcgatc tacttcgtgt
     1201 cttcgtcaca cgatggcgtc gcatactttt cgcatccgtt gaatgctggc gatgagagtg
     1261 gcgatgacgg agagatagtc gtattcgata cgacctcgcg tcacgtgccg atgacgattc
     1321 gtggacggca cctcatcgtg agccgcgcgg ccgccgatgg tctgcgcact gttacggaag
     1381 tgttcgaact ttccaatgac acgtctgtca ctcgcatcgc gcccaacgag tccgatgctg
     1441 ctgcggtgtg gtcgtcgggg ctcccatccg gcgctggcac accggtggtt gccgacggcg
     1501 acattccggc ggccgctgtg cggtttgcaa attctcgcgc gctcgtgtat gcgccgttcg
     1561 caccgggaat gaagcagctt gcatttcact atgacctgcc ggcggatgcg ttcccgctca
     1621 agattccgtt cgagcacagc actgtcgtgt tcgaggttct cgtcgaagat ccgaccggga
     1681 ctgcgagcgg tgccaagttg gccgcggtcg cacccgttgc aatcgagggt cacgagttcc
     1741 atcgctatct cgcatcggat gttcctgcga actccgtcgc ggtgatcagt gtacccgaag
     1801 tgaagcagcc gccggcactg ctctttgtcg ccgggctcac gcttctcatc ggaggcgcaa
     1861 tgacggtaac gcttgcgcgc gcgctcaggc gcaggtagct tcacctcata attgattttc
     1921 gcggtcgggg gacacggaag ccggtgaaat gccggcgcgg ccccgccact gtaacgggca
     1981 gtaagcgtat ctgcggtccc actggctgag cgagccggga agggagatgc gacggcccgg
     2041 agccaggaga cgaccttcgt ccgcgccaca tctcacagac cctcggggga gggctggtgg
     2101 cgttgtacgt cgtcgcctgt cgatctcgtg catacgttgc gggcttcctc cgaaagagga
     2161 tgcccgtttt gcgtttcagg accatgcgtt tcgcggctgc actggtgtcg ccgcacagat
     2221 ccacattacg gatacggatc tccgcatgcg ccgcgtacgc tgcgtgcgct gcgtgcgcca
     2281 cgctcgcgat tctcgccgca tcctgtacgc cagacgcaac tcgaaccgcg acagcgtcgc
     2341 tcggcgcgac gaacacgaca gcgaccaatc cgtcgtcagt cgcccgggat gatttcggac
     2401 gcgcgatacc gtttgcgata cggccgcatc gcgtcgtctc gctcaatccg actacgaccg
     2461 aggtcatgtt cgcgatcggt gcgggcacgc tgctcgtggg ccgctcacac tgggacgatt
     2521 ggccggattc ggcaagaacg atccccgaca tggggaatgg tatcagtccc aacgtcgaaa
     2581 agatcgtcgc cgcacaccct g
//
LOCUS       DATIMD010000389         1661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3905324, whole genome shotgun sequence.
ACCESSION   DATIMD010000389 DATIMD010000000
VERSION     DATIMD010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3905324"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..669
                     /locus_tag="VLI40_08605"
     CDS             <1..669
                     /locus_tag="VLI40_08605"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSU97277.1"
                     /translation="TRFIAISNAVKTAMVRSGVDAHRIIVVHSGVPTPSAPSPRDWRK
                     ELGWSRETVIAGVVGAMTAEKGIDSLRHVGTWLSEDAIRRTRIVLLGGTAKGPIKLGP
                     LTAQQAGFVPDVHNGMAGLDILWHPAAEEGLGTVLIDSLALSVPPIAFDVGGIAEIVE
                     NGINGLLVPSGNTQAFATAHESLLDEGFRARLAAEGPARAAVFSVEAMTEGVERVYQE
                     IITA"
     gene            680..1420
                     /locus_tag="VLI40_08610"
     CDS             680..1420
                     /locus_tag="VLI40_08610"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSU97278.1"
                     /translation="MLHICIPTYNEGPTVGVLLWRIRKVFQDYSREYEVIVYDDGSTD
                     DTAATLEPYCKVLPLTVLHGASRQGFGHALSALCADVSRRTKYPRRDAMVVMQADFTD
                     QPESLPELLKRFEGGADIVTTERAQQAMPPAVRRLAKFGPWMMRPFVSAKDVADPFAS
                     FKMYRISLLRDYAKSSGDVPLVTSDGWAANLELFLKLAPLARKIDKVAVEPRYDLRPR
                     ETRVRPFADAMALYRAGRASGGWRKVTT"
     gene            1417..>1661
                     /locus_tag="VLI40_08615"
     CDS             1417..>1661
                     /locus_tag="VLI40_08615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97279.1"
                     /translation="MTPSALIRIAIAAGLSVALRAAAQTPTSAGPETTATVAATSVVQ
                     ADSQMSVPFNVGETAEYDVKFGALKVGSASTLVKGVE"
BASE COUNT          326 a          500 c          534 g          301 t
ORIGIN      
        1 acgcgcttca tcgcgatatc gaatgccgtg aaaaccgcca tggtgcgctc cggcgttgat
       61 gctcaccgga tcatcgtggt acactcgggc gtaccaacgc cgtccgcgcc gtcaccacgc
      121 gactggcgca aggagctagg ctggtcgcgc gaaacagtca tcgcgggcgt tgtgggcgca
      181 atgacagctg aaaaaggaat cgattcgctc cggcacgtcg gcacctggct cagcgaggac
      241 gcgattcgcc gaacgcgcat agtcctcctc ggcggcacgg caaagggtcc gatcaaactg
      301 gggccgctaa cggcgcagca ggccggattc gtccccgacg tccacaacgg aatggccggc
      361 ctcgacattt tatggcatcc ggcagcagag gaaggactgg ggaccgttct catcgattcc
      421 ctggcgctga gtgtcccgcc aatcgcgttc gacgtgggcg gaattgccga aattgtggaa
      481 aacgggataa acggacttct tgtcccatca ggaaacactc aagccttcgc cacggcccac
      541 gaatcgctcc tggatgaggg tttccgcgcc cgattggccg ctgaaggtcc ggctcgggcg
      601 gcagtcttca gcgtcgaagc aatgaccgaa ggcgtggaac gggtgtacca agagatcatt
      661 accgcctaac ttgacagaca tgcttcatat atgcatcccg acgtacaacg aaggtcccac
      721 tgtaggagtt ctgctctggc gcatccgcaa ggtgttccag gactactccc gcgagtacga
      781 ggtgatcgtt tacgacgatg ggagcaccga tgatacggcg gcgacactgg agccgtactg
      841 caaggtcctg ccgctcaccg tcctgcatgg tgcaagtcga cagggctttg gccacgcgtt
      901 gagcgcgctg tgcgcggatg tgtcacgtcg caccaagtat ccacgacgcg acgcgatggt
      961 ggtgatgcag gcggatttca cggatcaacc ggaatcactt cccgagctgc tcaagcggtt
     1021 cgagggcggc gctgacatcg tgacgacgga acgcgcgcag caggcgatgc cgccagcggt
     1081 gcgcaggctc gcgaaattcg gtccctggat gatgcgtccg ttcgtttctg cgaaggacgt
     1141 cgcagatccg ttcgcgtcgt tcaagatgta ccgcatctcg ctgctgcgcg actacgccaa
     1201 atcgtccgga gacgtcccgc tcgtgacgag cgatggttgg gcggcgaacc tggagctctt
     1261 tctcaaactc gcgccgctgg ctcgcaagat cgacaaggtt gcggtcgagc cgcgttacga
     1321 tctccggccg cgcgaaactc gcgtgcgtcc gttcgccgat gcgatggcac tgtatcgtgc
     1381 aggccgcgca tccggcggct ggcgcaaggt gactacgtga cgccttctgc gctcatcagg
     1441 atcgcgatcg cagctgggct ttccgttgca ctacgcgccg cggcccagac accaacgtcg
     1501 gcggggccgg agacgacagc gacagttgcg gcgacgagcg ttgtgcaggc cgacagccag
     1561 atgtcggtac cgttcaatgt tggcgagacg gcggagtacg acgtcaagtt cggagcactc
     1621 aaggtcggca gtgcgagtac gctggtgaaa ggcgtcgagc a
//
LOCUS       DATIMD010000390         3118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5356023, whole genome shotgun sequence.
ACCESSION   DATIMD010000390 DATIMD010000000
VERSION     DATIMD010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3118
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5356023"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VLI40_08620"
     CDS             <1..414
                     /locus_tag="VLI40_08620"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSU97280.1"
                     /translation="SDAHRVVIEITERTAIKDYPKFRERLRTFRDRGFRFAVDDAGSG
                     YAGLGSIANLEPDFIKLDISLINGIDTNFIKQDLVATLVRFANDQGAMVIAEGVEYEQ
                     EYEVVKSLGVHLVQGFYLHRPQQLTNELESTIDGA"
     gene            complement(358..1647)
                     /locus_tag="VLI40_08625"
     CDS             complement(358..1647)
                     /locus_tag="VLI40_08625"
                     /inference="COORDINATES: protein motif:HMM:NF016311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase N-terminal domain-containing
                     protein"
                     /protein_id="HSU97281.1"
                     /translation="MTPWLRVAYGAAAKTAELASLVTPRNTESKLARAFAARRGIRRR
                     YRDWGARGRDRSRPLLWIHAASVGEGLMALPIVHSVRRALPNVQIAYTFFSPSAEPLA
                     KQMGADFSDYLPFDSAGAARVAIDALDPAAIVFAKGDVWPALVREALAQGVRLALISA
                     SIPASSLRKSAVGSMLTRDAYRSLDAIGAASTDDATRIVEAGARADRVRVTGDTRYDQ
                     AWERAHTAPRNAEIVAALHSARLTLVAGSTWRSDERELLPAWRALRAQVPDARLIIAP
                     HELAEGHVVAIEHWAAGNSLSVSPLASATPSTDVVVIDRLGVLADLYALATVAYVGGG
                     FHDAGLHSLVEPAVFRVPVIIGPRHTDSRDAALMLATGGAVSVDDAPQLSRALIRLFT
                     DDQERADRAEAIGAVVAAELGAVDRTFELVRELLRTV"
     gene            complement(1702..2403)
                     /locus_tag="VLI40_08630"
     CDS             complement(1702..2403)
                     /locus_tag="VLI40_08630"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HSU97282.1"
                     /translation="MRTTLVNGLAGLSIAASITFVSLGCAKPNGHTASDTPTAGASPV
                     AAAGALTDSLSKTADSSRIQGSPSAKIWVIEVSDFQCPYCKEWHDATYKTVLDDYVKT
                     GKVRMAYVNFPLSIHAHAHQAAIAAMCAGAQNKFWQMHDALFASQATWEALPDPAASF
                     DSLAKSVGVDEAKYHACLSSPSIAALVAGDQQRAKGGGVTATPSFWVGGKLIEGAIPT
                     SEMKAAIDQALEAAK"
     gene            2416..>3118
                     /locus_tag="VLI40_08635"
     CDS             2416..>3118
                     /locus_tag="VLI40_08635"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HSU97283.1"
                     /translation="MVLQTLLQSALLALLVQSGPTIPPPVGLVNDFAHVIPADAAAHI
                     EQIASDVRNKSRGEFTVVTLPDIGDYAPSDVALKIGRQWKVGKIGNPGDPTRNAGAVI
                     LVVPKETNSDGRGECFILVGNGAEGFVTDADAGTMCRQAIPFFKQKDYGGGIELLTLL
                     TAQRFANEFHFTLDTALHAPEPEAAPQPTGGRGFPPQMIFLAIVFVVIMLSNLRRGGR
                     GCGGCLPLFIPWGGGG"
BASE COUNT          585 a         1027 c          944 g          562 t
ORIGIN      
        1 tccgacgccc accgcgtggt catagagatc accgagcgta ccgcaatcaa ggactatccc
       61 aaattccgcg agcgattgcg cactttcagg gatagaggct ttcgcttcgc cgtcgatgac
      121 gccggcagcg gctacgccgg gctcggctcc atcgcgaatc tcgagccgga tttcatcaag
      181 ctcgacatat cgctcatcaa cgggatcgac accaacttca taaaacagga tctggtcgcg
      241 accctcgttc gtttcgcgaa cgaccagggc gcgatggtga tcgccgaagg cgtcgagtac
      301 gagcaggaat acgaggtcgt caaatcactc ggcgtgcacc tcgtacaggg attctaccta
      361 caccgtccgc agcagctcac gaacgagctc gaaagtacga tcgacggcgc ctagctccgc
      421 cgcgacaacc gctccgatcg cctccgcacg gtccgcgcgt tcctggtcat cggtgaatag
      481 acgaatcagc gcgcgcgaca gttgcggtgc gtcatccacg ctcacggcgc cgccggtcgc
      541 cagcatcaac gcggcatcac gcgagtcggt gtgacgcgga ccaattatca ccggtactcg
      601 aaatacggcc ggctcgacaa gtgaatgcag tccggcgtcg tgaaagccgc ccccgacata
      661 cgcaaccgta gcgagcgcat acaggtccgc gagcactccg agacggtcga taactactac
      721 gtcagtcgat ggtgtcgcgg acgcgagcgg tgacacggac agcgagttgc ctgccgccca
      781 gtgctcgatt gcgactacgt ggccttcggc cagctcgtgc ggtgcgatta tcagccgtgc
      841 gtccggcact tgcgcacgca gcgctcgcca cgccggcaac agctcgcgct cgtcggagcg
      901 ccacgtcgag ccggcgacga gagtgaggcg cgcggagtgc agcgccgcga cgatctccgc
      961 gttgcgtggc gccgtgtgag cgcgctccca cgcctggtcg tagcgcgtat cacctgtcac
     1021 gcgcacacga tcggcgcgcg cgccagcttc gacgatgcgt gtcgcgtcgt ccgtgctggc
     1081 cgcgccgatc gcatccaggg agcggtacgc gtcgcgtgtc agcatcgatc cgaccgcgct
     1141 cttgcgcagc gagctcgctg ggatcgaagc gctgatgagc gcaagtcgaa ctccctgtgc
     1201 cagcgcttcc cgaaccagcg ccggccacac gtcacctttc gcgaatacga tcgcagcggg
     1261 atcgagagcg tcgatcgcca cgcgcgccgc gccggcagaa tcgaacggca gatagtcgct
     1321 gaaatccgca cccatctgct tcgcaagcgg ctccgcgctc ggcgagaaga acgtgtatgc
     1381 gatctgtacg ttcggtaacg cgcgcctcac gctgtgcact atgggcaacg ccatgagtcc
     1441 ttcaccaact gacgcagcgt ggatccacaa caacggacgc gaccggtccc gtcccctggc
     1501 gccccagtct ctgtaacgtc gccggattcc gcgccgtgcg gcgaacgctc tggcaagctt
     1561 gctttccgta ttacgtggcg tgaccagact ggcaagttct gccgtttttg cagctgctcc
     1621 gtacgcaacg cgaagccagg gcgtcataaa gatggcaagc gcaggtgggg cacggatgca
     1681 tccgtgcctg tcacttaaaa ctcacttcgc ggcttcgagc gcctgatcga ttgccgcctt
     1741 catctcgctc gtcggaatcg cgccctctat cagcttgcca ccgacccaga agcttggagt
     1801 cgcggttacg ccgccgcctt tcgcgcgctg ctggtcacca gcgacgagcg cggcgatcga
     1861 tggcgagctg agacacgcat gatacttcgc ctcgtcgact ccgacagatt tggcgagcga
     1921 atcaaagctc gccgcgggat cgggtaacgc ctcccacgtc gcctgcgatg cgaacagcgc
     1981 atcgtgcatc tgccagaact tgttctgcgc acccgcgcac atcgccgcga tcgccgcctg
     2041 gtgcgcatgc gcgtgaatcg acagcgggaa gttcacatac gccatgcgca ccttgcccgt
     2101 cttcacgtaa tcgtccagca ccgtcttgta cgtggcgtcg tgccattcct tgcagtacgg
     2161 gcactgaaag tcgctgacct cgatcaccca gatcttggcc gagggcgatc cctggatgcg
     2221 actcgaatcc gcggtctttg aaagcgagtc agtgagcgcg cctgccgcgg ccactggcga
     2281 ggcaccggct gtcggcgtat cactcgccgt atgaccgttc ggtttggcgc agcccaaaga
     2341 cacaaatgtg atcgaggcgg cgatggagag tcctgcgagt ccgttgacta gtgtagtacg
     2401 catgccgtaa atactatggt gctccagacc ctacttcaat cggcgcttct ggcgctcctc
     2461 gtccagagtg gtccgacgat cccgccaccg gtggggctgg tcaacgactt tgcgcatgta
     2521 attccagccg acgccgcggc gcatatagag cagatcgcca gtgatgtgcg caacaaatcg
     2581 cgcggcgaat tcacggtagt cacgctcccc gacatcggcg actacgcgcc atccgacgtc
     2641 gcgctcaaga tcgggcgaca gtggaaggtc ggaaaaatcg ggaatccggg cgaccccacg
     2701 cggaacgccg gcgctgtgat actggtagtt cccaaggaaa ccaattcgga cggcaggggc
     2761 gagtgtttca tcctcgtcgg taacggcgcc gaaggattcg tgaccgacgc ggatgcagga
     2821 acgatgtgcc ggcaggcgat cccgttcttc aagcagaagg attatggcgg aggcatcgag
     2881 cttctgacac tgctcaccgc tcagcgcttc gccaacgaat tccacttcac gctcgatacc
     2941 gcgctgcacg cgcccgagcc ggaggccgcg ccccagccca cgggtggtcg cgggttcccg
     3001 ccgcagatga tctttctcgc gattgtcttc gtcgtgataa tgctcagcaa tcttcgccgc
     3061 ggtggccgcg gatgcggcgg ctgtctcccg ctctttatcc cgtggggtgg aggcggcg
//
LOCUS       DATIMD010000391         3112 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2174965, whole genome shotgun sequence.
ACCESSION   DATIMD010000391 DATIMD010000000
VERSION     DATIMD010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2174965"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(119..1480)
                     /locus_tag="VLI40_08640"
     CDS             complement(119..1480)
                     /locus_tag="VLI40_08640"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HSU97284.1"
                     /translation="MTTIAPRLDMPPVNHTPRPYTGPTREAILEMRRHYTNPAIFTTY
                     HDPLLIVEGFMQYLYDETGRRYLDMFAGIVTVSVGHSHPEFVRRVQEQVGTLQHATTM
                     YLHPNFALLAKKLASKMPPGLDVTYFVNDGTEANELAITMARLFTGNTDIIAVRNGYH
                     GGSPTGQGLTSHSTWKFPVSGEGHVHHAINPHPYRSPFNGTPEEIATMSARDIRDLIR
                     YSTPGKVAAFLAEPIQGVGGATHGAPNYLKEAYAVVREAGGLCIADEVQTGFGRTGDH
                     YWGFQNFGVVPDFVTMAKGLGNGAPIGAVTTRMDIARTLAQRIHFNTFGGNPVSMAAG
                     LAAMDIIDEDGLQENSRVIGARLKKGLQRLQESHELIGDVRGMGLMLGVELVRDRATK
                     EPAKAETAEILEATRELGVLIGKGGLDGNTLRIKPPMCITADDVDFALEVFDQAFAKV
                     EGK"
     gene            1706..2188
                     /locus_tag="VLI40_08645"
     CDS             1706..2188
                     /locus_tag="VLI40_08645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97285.1"
                     /translation="MDEAAEFLTSDCFFPLIWPILMFRGCPTWREGTASFCIWGRRMT
                     LDTFVGFIVDHWVALSLILCPIVIVLMALAALSCEACGAPFGIFRRRSKTIDLCLRCA
                     LIHDIRHAGEASKARATGGASPAQPPAPIPNRDESSREDRRYNAGGLGVTGHESGVRA
                     "
     gene            complement(2278..>3112)
                     /locus_tag="VLI40_08650"
     CDS             complement(2278..>3112)
                     /locus_tag="VLI40_08650"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HSU97286.1"
                     /translation="GVVLSAVTVSPFPAILLTIVGIILAQAPRIAQEWERGVVLRLGR
                     FVGLRGPGLFWVTPFVESVNSWIDQRVITTGFAAEQSLTADTVPVNVDAVLFWLVHDP
                     QKAALEVQDYFNAVTWAAQTALRDIIGRTSLSDLLLGREQIEGELQKLIDERSSPWGV
                     TVQAVEMRDVLIPESLQDAMSRQAQATREKQARVILGEAEVEIAALFDKAAATYGSNP
                     TALHLRAMNMLYEGLKEKGALMIVPSSALDTMGMGALGGTAALGQQFLTQQQQQAASK
                     P"
BASE COUNT          544 a          940 c          960 g          668 t
ORIGIN      
        1 aacatgtcat cccccggatg tcacaaaacg caggggagaa tgtaagaccg gccgacccgg
       61 aaggcgcgtt aaggacgcga taagaaatct gcgtctcgac gagccttccg gtcgcgcgtt
      121 acttgccttc tactttagcg aacgcttgat caaacacctc gagcgcgaaa tccacatcgt
      181 cagctgtgat gcacattggc ggcttgatgc ggagcgtatt gccatccagt ccgcccttgc
      241 cgatcagcac accaagctca cgcgtcgctt cgagaatctc ggctgtctcc gccttcgcgg
      301 gttccttggt cgcgcggtcg cgaaccagct cgacgccaag catgagtccc atcccgcgca
      361 cgtcgccgat cagctcgtgt gattcctgca gacgctggag tcctttcttg agacgcgcac
      421 cgatgacgcg cgagttctcc tggaggccgt cctcatcgat gatgtccatc gccgcgagtc
      481 ccgcggccat cgacaccgga tttccgccga acgtattgaa gtgaatgcgc tgagccagtg
      541 ttcgcgcgat atccatgcgc gtcgttaccg cgccgattgg agcgccgttg cccagtccct
      601 tggccatcgt gacgaagtcc ggcacgacgc cgaagttctg gaatccccag taatgatcac
      661 ctgtgcggcc gaatcctgtc tgcacttcgt cggcgatgca gaggccacca gcctcgcgca
      721 cgacggcata cgcttccttc agataattcg gcgcgccgtg cgttgcgccg ccaacgccct
      781 gaatcggctc ggcgagaaac gcagcgactt tcccgggcgt cgagtacctg atgagatcgc
      841 gtatgtcacg cgcgctcatc gtcgcgatct cttccggcgt tccgttgaac ggactcctgt
      901 acggatgcgg attgatcgcg tggtgcacgt gtccctcgcc tgacacgggg aacttccacg
      961 tgctgtgtga cgtgaggccc tgaccagtag gacttccgcc gtgatagccg ttacgcaccg
     1021 cgatgatgtc ggtgtttccg gtgaagagac gcgccatcgt gatcgcgagc tcgttcgcct
     1081 cggttccgtc gttgacaaag taggtgacgt cgagaccggg cggcatcttg gacgcgagct
     1141 tcttggcgag cagcgcgaag ttgggatgca ggtacatcgt ggttgcgtgc tgcagtgttc
     1201 caacctgttc ctgaacgcgc cgcacgaatt ccggatgcga atggccaacc gacacggtca
     1261 cgatgcccgc gaacatgtcg aggtatcgtc tgcccgtttc gtcgtagaga tactgcatga
     1321 atccctctac gatgagcagc ggatcgtggt acgtggtgaa gatcgccgga ttggtgtagt
     1381 ggcgccgcat ctccaggatc gcctcacggg tcggaccagt gtatgggcgc ggcgtatggt
     1441 tcactggcgg catgtcgagc cgcggtgcaa tcgtggtcac ctgctgaact ccttgatgtt
     1501 gtttctccgg ctcggcaccg ctgctccgct caccgggcgt ccgcccgacg cgtctggcgc
     1561 cgcttttcca ccctcaataa tgcatgatcc gccgtccgga acgaaccggg tgtcgaactg
     1621 gcgctcgata tgcacttggt actatggcga acgtagttgc gaacgcagtg gcgcacgcag
     1681 tctggcggca ggcggttcgc actgaatgga tgaagcggcc gaatttttga cctctgactg
     1741 cttctttccg ttgatttggc cgatactgat gttcaggggc tgcccgacct ggcgggaagg
     1801 aactgcgagt ttctgcattt gggggagaag gatgacactt gatacgttcg tgggcttcat
     1861 cgtcgaccat tgggtggccc ttagtctgat actttgcccg atcgtgattg tactgatggc
     1921 gcttgccgcg ctgtcttgcg aggcttgtgg cgctccgttc ggaatcttcc gccgtcgcag
     1981 caagacaatc gatctgtgtt tacggtgcgc gctgatccac gacatcaggc atgcaggcga
     2041 ggcgagcaaa gcccgcgcga cgggtggtgc gtcgcctgcc cagccaccgg cgccgattcc
     2101 gaatcgtgat gagtcgtctc gcgaggatcg ccgctacaac gccggcggcc ttggtgtcac
     2161 gggccacgaa agtggggtca gagcctagtt ccgtgtagtt ccgtgtagtt tcccgcgaaa
     2221 gcgggatgat gttctttcgc gggaatgacg agcggcaacg agcctgggac ttctacatca
     2281 aggcttggat gccgcttgct gctgttgttg cgtcagaaat tgttgaccga gcgccgctgt
     2341 tccgccgagc gcgcccatgc ccattgtatc gagggcggag ctcgggacga tcatcaacgc
     2401 acctttttcc ttgagccctt catacagcat gttcatcgcg cgcagatgca gcgccgttgg
     2461 attgctgccg tatgttgcag ccgccttgtc gaacagagcc gcaatttcca cttcggcttc
     2521 tccgagtatc acgcgtgcct gcttttcgcg agtcgcctgc gcctggcgtg acatggcgtc
     2581 ctgcagcgat tcggggatca gcacgtcgcg catctcgacc gcctgcacgg tgacgcccca
     2641 cgggctggag cgctcgtcga tcagcttctg cagctcgcct tcgatctgtt cgcggccgag
     2701 cagcaggtcg gagagtgacg tgcggccgat gatgtcgcgg agcgcagtct gggccgccca
     2761 cgttaccgcg ttgaagtaat cctgcacttc gagcgccgct ttctgtgggt cgtgcaccag
     2821 ccagaacagt accgcatcga cgtttacagg gactgtgtcg gcggtgagtg attgctccgc
     2881 cgcgaaacct gtcgtgatga cgcgctggtc gatccagctg ttgacggatt cgacgaatgg
     2941 agtaacccag aacaggcccg ggccgcgcaa cccgacgaag cgtcccaggc ggaggacgac
     3001 gccgcgctcc cactcctgtg cgattcgtgg tgcttgcgcc aggatgatgc cgactatcgt
     3061 gaggagaatc gccgggaacg gcgagactgt tacagcgctc agcacgacgc cg
//
LOCUS       DATIMD010000392         4337 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4196643, whole genome shotgun sequence.
ACCESSION   DATIMD010000392 DATIMD010000000
VERSION     DATIMD010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4337
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4196643"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..766
                     /locus_tag="VLI40_08655"
     CDS             <1..766
                     /locus_tag="VLI40_08655"
                     /inference="COORDINATES: protein motif:HMM:TIGR02669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SpoIID/LytB domain-containing protein"
                     /protein_id="HSU97287.1"
                     /translation="AVEAQAIAARSFAYTRMDDSRPYDMLATVTDQVYGGVDAERPLS
                     DAAVAATHNMVMMYDGRVINAPYHSNSGGVTAAASEVWRSGDEPYLVSVSDRIPGTDH
                     YYGEDSPRFKWTRTLGASELASLLDRYLPQYSSAQRGRVGTLQKITITGRTPSGRVAG
                     LVFETDRGRFTVRGNDVRFILRAPGGDILPSTLFTFDESTDRRGRVTQLTINGGGNGH
                     GVGMDQWGAIARARAGQDVLTILHTYYPGTTIGRVI"
     gene            770..1780
                     /locus_tag="VLI40_08660"
     CDS             770..1780
                     /locus_tag="VLI40_08660"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HSU97288.1"
                     /translation="MASTPPIRVAVVGAGAISQIAHLPLLSKARGATLVALCDNDGPK
                     ARSLAERFGVRDVFTDIDDLFDFDQVDAVVIATPNHLHEPHVLAAIRAGVDVLCERPL
                     SLTSRGVERIVAAAQNAGRKVVVGNNHRFRTDVQQLQRFMRGGELGAIAGIRGGHYQF
                     RGQQGGWRYRRPEAGGGAFLELGYPLLDLALWLTDFPEPVRVSAQFDRGRGASAVEDS
                     MAVQLELAGGLLFTADVAWNYVGEEDRWWFETRASRGSARLAPLRVVKLLNGKPTDVS
                     PTGAAARESAFIQSYRAELAHFIALIRDEIPYKPPTDQLVVQKLVEAVYKSAEEGREI
                     RS"
     gene            1827..3407
                     /gene="lnt"
                     /locus_tag="VLI40_08665"
     CDS             1827..3407
                     /gene="lnt"
                     /locus_tag="VLI40_08665"
                     /inference="COORDINATES: protein motif:HMM:TIGR00546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HSU97289.1"
                     /translation="MKIRAGGLIPGRAEAFAALASAALFAISFPPFNLVVPVLLCLVP
                     IAIMVTHAADREGHAWQAARAGFWFGFIGYGANLYWIAVALHLYTNLAILGYIGALIW
                     LAPMVGATMAALYFARKLTGWPLAILLPIVWTASELALNYLSDLSFPWLPLGLAFAHV
                     PVLAQVADLSGVRGVSFCIAAVNGFVVDAWLHRSNRRAATTRIAGALAVLVFVFAYGE
                     WRMATIQLRPLARIAIIQPDIPEEVKLTTQDPSAHVGKLAEMTRVEVARSSPDLVVWP
                     EAALDRFLWQYPAWFDSLRAAVAEHPTPMVVGFMDSSDPRVLPFAYYNAALLTDPRGN
                     VSPQPPYRKHYLVPIVERVPFLNPDWFQGVNYFGGFGRGTSEEPFHLAFGTAGVLICY
                     ESIFPQLARDYAKQGTSVLLNITNDAWFQRSNAPYQHFAHLSLRAIENRLPIVRAANT
                     GISGWIDPLGRVRAETPIFVPRTATYDVEVTSQRTLYTLVGDWVGALCLVITFGFLFA
                     AWRSSRLRRRSVEKLSAQ"
     gene            complement(3443..3880)
                     /locus_tag="VLI40_08670"
     CDS             complement(3443..3880)
                     /locus_tag="VLI40_08670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97290.1"
                     /translation="MFTRTSLCAAALAASVLAASVGLPGCASLRGRTEGPTVPIVVEV
                     QNNLALPTDLTVYAVTRSGARTLLGDVPPAATKSFTFKPVSFSEPYRLLARRPLSRTI
                     ASQVFTVGSDMTGRIIWTLSPNIVGFEEVDTDSTAAPDTAKKP"
     gene            4110..4325
                     /gene="rpmE"
                     /locus_tag="VLI40_08675"
     CDS             4110..4325
                     /gene="rpmE"
                     /locus_tag="VLI40_08675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010242421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HSU97291.1"
                     /translation="MKPDIHPLYATAKVHCACGNTFETRSTVANISTDICAVCHPFYT
                     GKAKMVDTAGRVERFRQKYGRKEKATA"
BASE COUNT          778 a         1322 c         1416 g          821 t
ORIGIN      
        1 agcggtcgag gcgcaggcga tcgcggcgcg cagctttgca tatacgcgca tggacgactc
       61 gcgcccttac gacatgctgg cgacagtcac ggatcaggtc tacggcggcg tggatgcgga
      121 gcgtccgctg tccgacgccg cggtcgccgc aacacacaac atggtgatga tgtacgacgg
      181 ccgcgtgata aacgcaccgt atcattcgaa ttccggcggc gtcacagcag ccgcgagcga
      241 agtgtggcgc agtggtgacg agccgtacct cgtatccgtg agcgacagga tccccggcac
      301 cgatcactac tacggcgagg actcgccgcg attcaaatgg acccgcacgc tcggcgcgtc
      361 ggagcttgcc tcgctgctcg accgctatct gccgcagtat tcgtcggctc agcgcggccg
      421 cgtggggacg ctgcagaaga tcacgatcac aggccgcacg ccgtcggggc gggtcgcggg
      481 gctggtgttc gagaccgatc gcggccgatt cactgtgcgc ggcaacgacg ttcgcttcat
      541 actgcgcgcg ccgggcggcg acatacttcc gagcaccctg ttcaccttcg acgagagcac
      601 cgacaggcgc gggcgcgtga ctcagttgac gatcaacggg ggcggtaacg gtcacggagt
      661 gggcatggac cagtggggag ccatcgcgcg tgcgcgcgcc ggccaggacg tgctgacgat
      721 cctgcacacg tactacccgg gaaccacgat cgggcgagta atttaggtaa tggcatccac
      781 gcctccgatt cgagtagcag tagtgggagc gggtgcgatc tcgcagatcg cacatctgcc
      841 gcttctttcc aaggcacgcg gggcgacact tgtcgcgttg tgcgacaacg acggtcccaa
      901 ggcgcgctcg ctcgccgagc gctttggcgt gcgcgacgtg ttcaccgaca tcgacgatct
      961 gttcgacttc gaccaggtcg atgcggtggt gattgcaaca ccgaatcatc ttcatgagcc
     1021 gcacgtgctc gcggcaatac gagctggcgt cgacgtattg tgcgagcggc cgctgtcgct
     1081 cacctcgcgc ggtgtcgagc gtattgtcgc agccgcccag aatgcgggac gaaaggtggt
     1141 ggttggcaac aatcaccgat tcaggacgga cgtccagcag ttgcagcgct tcatgcgcgg
     1201 cggtgagctt ggcgcgatcg ctggaatccg cggcggacac tatcagttcc gcggccagca
     1261 gggcggttgg cgctatcgtc gtcccgaggc tggcggcggc gcatttctcg agctgggata
     1321 cccgttgctc gacctcgcgt tgtggctcac cgacttccct gagcccgtac gcgtaagtgc
     1381 gcagttcgat cgagggcgcg gcgcatctgc tgtcgaggat agcatggcgg tgcagctcga
     1441 gctggctggc ggtttgctgt tcaccgcgga cgttgcgtgg aactacgtgg gcgaggaaga
     1501 tcgctggtgg ttcgagacga gagcgtcgcg cggaagcgcg cgtctcgcgc ctctgcgcgt
     1561 ggtgaagctg ttgaacggaa agccgaccga cgtctcgccc acgggcgcag cggcgcgcga
     1621 gagcgcgttc atccagagct accgcgccga gctggcgcat ttcatagcac tgatacgcga
     1681 cgagataccg tacaagccac cgacggatca gctggtcgtg cagaagctgg tcgaggcggt
     1741 gtacaagtcc gccgaagaag ggcgcgaaat tcgttcgtga agcgcacgaa tgaagtaacg
     1801 cgcgtcgcaa ctgtgatcgc tccgcgatga agatccgcgc tggcggactg attccaggcc
     1861 gcgccgaagc atttgcggca ctcgcgtcag cggctctttt cgcgatatca tttccgccgt
     1921 tcaatctcgt cgtacctgta ctgctgtgcc tggtaccgat tgcgatcatg gtgacgcatg
     1981 cagctgaccg ggaagggcac gcgtggcagg ccgcgcgggc cggattctgg ttcggcttca
     2041 tcggctacgg cgccaatctg tactggatcg cggtcgcact gcatctctac accaatcttg
     2101 ccatcctcgg ttacatcggc gctctcatct ggcttgcgcc gatggtgggt gcgacgatgg
     2161 cggcgctcta cttcgctcgc aagctgacag ggtggccgct tgcgattctg cttccgatag
     2221 tctggacggc ttcggagctg gcgctcaact atctgagcga tctttcattt ccgtggcttc
     2281 cactcggact cgcgttcgcg cacgtgccag tgctggcgca ggtcgccgat ctgagcggag
     2341 tgcgcggcgt atcgttctgc attgcagcag tgaacggttt tgttgtcgac gcgtggttgc
     2401 acaggtccaa ccggcgggca gcaacgacgc gaatcgccgg tgcgttggcc gtgctcgtat
     2461 tcgtgttcgc gtatggtgaa tggcgcatgg cgaccattca gctcagaccg ctcgcgcgca
     2521 tcgcgatcat acagccggac atcccggaag aagtaaagct cacaacgcag gacccatcgg
     2581 cgcacgttgg gaagctcgcg gaaatgacac gcgtcgaggt cgcgcgatcg tcgccagatc
     2641 tcgtcgtgtg gcccgaggct gcgctggacc gttttctctg gcagtatccc gcgtggttcg
     2701 attcactccg tgcggcggtc gctgaacatc cgacaccgat ggtcgttgga ttcatggatt
     2761 cgagcgatcc gagagtgctc ccgttcgcgt actacaacgc cgcgttgctc accgatccac
     2821 gcggcaacgt cagtccgcag cctccgtacc gcaagcatta cctcgttccg atcgtggagc
     2881 gcgtgccgtt cctcaatccc gactggtttc agggcgtcaa ttatttcggc gggtttggac
     2941 gcggtaccag tgaggagccg tttcatctcg cgttcgggac ggcgggcgtg cttatctgct
     3001 acgaatcgat cttcccgcag ctggcgcgcg actacgcgaa gcagggaacg tcggtgctgt
     3061 tgaacattac aaacgacgca tggttccagc gaagcaatgc gccgtaccag cacttcgcgc
     3121 acctgtcgct gcgagcgatc gagaaccgcc tgccgatcgt gcgcgcagca aataccggaa
     3181 tctccggatg gatcgatcca ctcggccggg tgcgcgccga aacgccgatc ttcgtaccgc
     3241 gtaccgcgac gtacgatgtc gaagtgacat cgcaacggac gctttacacg ctcgtgggcg
     3301 actgggtcgg ggcgctgtgt ctcgtcatta ccttcggctt cctgtttgcc gcctggcgca
     3361 gctcgcgcct gcgtcgcagg agcgtggaga agctgagcgc gcagtaagcg tgcggtaagc
     3421 gcgcgtgccg caactacgcg ggtcagggct ttttggcggt atcgggcgcc gcggtggaat
     3481 cggtgtcgac ttcctcgaat ccgacgatgt tgggtgacag agtccagatg atccgtcccg
     3541 tcatgtccga cccaacggta aatacctgcg acgcgattgt gcggctgagc ggtcgcctgg
     3601 cgagcagacg atatggttcc gagaacgaca ccggcttgaa ggtgaagctt tttgtcgctg
     3661 cgggaggaac gtcgcccagc agcgttcgag cgccggatcg ggtgaccgca taaaccgtca
     3721 gatccgtcgg gagcgccaga ttgttctgga cttcgacaac gatggggacg gtggggcctt
     3781 cagtccgacc acgaagcgac gcgcatccgg gcagaccgac ggaggccgcg agtacggagg
     3841 ccgcgagtgc ggcagcacag agcgaagtgc gggtgaacat ctgatcctct gggaagagct
     3901 atgatcctac ggcaagcccc ggacccctga ggggccgccc ccgtgcctgc ccgcgatacg
     3961 acgatcggcc ctcccggact acgccgagca cactgcaacg cgaccggggt gggcgcgggg
     4021 ccgcccgctg ccgggggctc gtcgaatggc ttccatatgc catccagccg gattatcttt
     4081 agaggctagc cacacccgag gtcaatccaa tgaaaccaga cattcatcca ctgtacgcca
     4141 cggcgaaggt tcactgtgcg tgcggcaata cgttcgaaac acgctccacc gtcgccaaca
     4201 tcagcaccga catctgcgcc gtttgccatc cgttctacac tggcaaggcc aagatggtcg
     4261 ataccgctgg ccgcgtagag cgtttccgtc agaagtacgg acgaaaggag aaggcgaccg
     4321 cttagcggct cgtattc
//
LOCUS       DATIMD010000393         6292 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1891865, whole genome shotgun sequence.
ACCESSION   DATIMD010000393 DATIMD010000000
VERSION     DATIMD010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6292
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1891865"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VLI40_08680"
     CDS             complement(<1..387)
                     /locus_tag="VLI40_08680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HSU97292.1"
                     /translation="MNEENPFDAMMSRFDRAAELLDLEPGIYKILRNPEKQITVSCPV
                     VLDNGEVEVFTGHRVLYNTSRGPGKGGIRFDMHVTLEEVKALAAWMTWKCAVVNIPFG
                     GAKGGVVCDPLKMSVGELERLTRRYTN"
     gene            complement(451..1473)
                     /gene="lpxK"
                     /locus_tag="VLI40_08685"
     CDS             complement(451..1473)
                     /gene="lpxK"
                     /locus_tag="VLI40_08685"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: protein motif:HMM:NF014645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HSU97293.1"
                     /translation="MTVDELWYGNTTGVRLARAAVTPLSWLYGGAIAIRNALYDRGAL
                     RVHSASVPVVSVGNVTVGGTGKTPFSAYLVHELMAAGHRPAVVMRGYGDDELHLHARM
                     NPGVVVVTGADRVAGIRKAATSGADVVVLDDGFQHRRTARDVDIVLVSAENSRDDAGL
                     LPAGPLREPSRSLERADIVVVTQKSATDAQARAVMETIRTRHPHVDVAIAALQPDALV
                     QAEGDTSIALTQLRGERVLAVAGIGDPASFFAQLRQLEATVTELRFRDHHDYTTADCA
                     LIARESEGHKYVVTTEKDAVKLAGVWPANGRELWYLSQAVRLTQGNALVASALANLFK
                     TSHFNR"
     gene            complement(1470..2183)
                     /locus_tag="VLI40_08690"
     CDS             complement(1470..2183)
                     /locus_tag="VLI40_08690"
                     /inference="COORDINATES: protein motif:HMM:NF015961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSU97294.1"
                     /translation="MTRVQRLAVALGPALLRVLYSTWRVSTVNDSGWRALRAEGRSFV
                     FALWHGQLLPLTVQHRHQGVKVLISEHRDGEVIARITESLGFGSIRGSTTRGATRALL
                     AICDALTSEPGTEIAVTPDGPRGPARKFANGATVAAHRAGVPIVTVGVAASRAWRLRS
                     WDGFMIPKPFAHLTFAYSDPTYVNAQDSRGAAMQAETFEASLNAVVATAEMHERKHER
                     GHELQNEPQHEQRHGRGRA"
     gene            complement(2210..3319)
                     /gene="lpxB"
                     /locus_tag="VLI40_08695"
     CDS             complement(2210..3319)
                     /gene="lpxB"
                     /locus_tag="VLI40_08695"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HSU97295.1"
                     /translation="MREVLFVAGEASGDMHAGSVAAHLREIRPDLKTAGVGGAHMRES
                     GVDITRDYAELAVMGFVEIIKHIPKHAALLRQLRARLATGNVAVVVLIDYPGFNMKVA
                     AAAREAGVPVLYYVTPQVWAWGAGRLPKLARLVTRAAVILPFEAPLLAGYGIDATFVG
                     HPLLDRATNLPSRVEARTRLGIAPDEKVLALFPGSREQEIARHFVPFIESGRELARRH
                     PGLRVIVHGAPTVNLDALDCPFEVVRGASFDLFRAADVALCKSGTTTLEAAIAQCPMA
                     VAYRTGGLSYAIARRVVKIPYIGLVNVVAGREVAREFVQDALKPMEVATELGRLLDDA
                     VYREAQREGLIAVRNQLGTPGAAGRVAEMISGLAG"
     gene            complement(3312..4298)
                     /locus_tag="VLI40_08700"
     CDS             complement(3312..4298)
                     /locus_tag="VLI40_08700"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HSU97296.1"
                     /translation="MKPLRIGVVGAGALGYHHVRLLRQMPEFRLSGFVEERPERAAQV
                     SSELEVPSYSDLETLLDDVDAVTVVVPTPRHFAVASKALERGKHVLIEKPITATVEEA
                     DALLAIAQRTGAIVQTGHVERFNRAIRAALPYVSNPRFIESDRLAPFNIRGSDVAVVL
                     DLMIHDIDLILTLVNSGAGNIAAVGIPVLTQTVDIANARITFESGAVANITASRISRE
                     RVRKVRIFQPSGYLSLDLAAGNGEFFRLKKAGDLHALVASGKTPDLADFVERIALEAP
                     EGEPLKLEFESFASVLNGSAPLVVSGAAGRRALEVALRIVGDIERNAPSLGA"
     gene            complement(4295..5071)
                     /gene="lpxA"
                     /locus_tag="VLI40_08705"
     CDS             complement(4295..5071)
                     /gene="lpxA"
                     /locus_tag="VLI40_08705"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HSU97297.1"
                     /translation="MTAKIHPSAIVSSSAEIGDGVEIGPFAIVGDDCVIGDGCVISAR
                     ASLERYVILGRNVKIGVGTVLGSDPQDLKFKGERTTVEIGDNTVVREYSTINRGTSQS
                     FKTSVGANSFVMSYVHLAHDCHIGEGVVLANMVQLAGHVTVEDRVILSGVTAVHQFTR
                     IGRNAIVGGCSRVSKDVPPFVKAVGNPMKLYGLNSVGLRRNGFTAETILELKRAYRLL
                     FRSELNLAQAVERVTAEVEQIPEVRQLVQFVESSQRGVAI"
     gene            complement(5068..>6292)
                     /locus_tag="VLI40_08710"
     CDS             complement(5068..>6292)
                     /locus_tag="VLI40_08710"
                     /inference="COORDINATES: protein motif:HMM:NF009667.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP
                     dehydratase"
                     /protein_id="HSU97298.1"
                     /translation="TFRPAGAGEGITFRRVDLADKPVIPAHVDQVTATERRTQLGSGE
                     AAIHTVEHVLSAVAALEIDDLMIDMSGPEPPILDGSAAPFYDALIGTGIEELPGQPEY
                     LTLTEPLRVIDGNSVYEAHPANELSLDVTIEFPHPVIGRQSARYVVGRESYRDQMAAA
                     RTFGFLNEVEELRAKGLIQGASTDNAVVLDDTGVVANVLRWDDEFLRHKALDCVGDLA
                     LVGSRVKARIVAVRPSHRGTVTLVREMVRAGRRGRPTEQGAKSMAGTMSIEEIMKVLP
                     HRYPFLLIDRILEIEGKQRIVGIKNVTINEPFFQGHFPGHPIMPGVLIIEAMAQVGGM
                     LLMGGLEAAEQKVVYFMSLDNVRFRKPVRPGDQIRFELDVIQIRGAVCKMRGVAKVDG
                     ELVAEAEMAAMVRDR"
BASE COUNT         1190 a         2147 c         1769 g         1186 t
ORIGIN      
        1 gttggtatag cgacgcgtga gccgctccag ctcgcccacg ctcatcttga gcggatcaca
       61 cacgaccccg cctttcgcac cgccgaacgg aatgttgacc accgcgcact tccacgtcat
      121 ccacgccgca agcgccttca cctcttccag ggtaacgtgc atgtcgaagc gaatgccacc
      181 cttgccaggt ccgcgcgaag tattgtagag cacgcggtga ccggtgaaca cttctacttc
      241 gccattgtcc agaacaacgg gacacgacac cgttatctgc ttttccggat tgcgaagaat
      301 cttgtagatg ccaggctcga ggtccagcag ctcggcggca cggtcaaaac gcgacatcat
      361 cgcgtcgaat ggattttctt cgttcaaaac cgggtccttg tccgggtgga cgattttatg
      421 agtcgaaaga cggtgatcgg tggccattat tcagcgattg aagtggctcg ttttgaataa
      481 attcgcgaga gctgaggcga cgagagcgtt tccctgtgtc aagcgcacag cctgtgaaag
      541 ataccaaagc tcccgtccgt tcgcaggcca gactcccgcc aacttcaccg cgtccttctc
      601 tgtggtcaca acatatttgt gaccttcgga ttcgcgcgcg ataagggcgc agtctgccgt
      661 cgtgtagtcg tgatggtcgc gaaaacgaag ctctgtcaca gtggcttcga gctgacggag
      721 ctgcgcgaag aaactcgctg gatcaccgat tccggcgacg gcgagcacgc gctctccgcg
      781 tagctgcgtg agcgcaatgg acgtgtcgcc ctccgcctgc accagcgcgt cgggttgaag
      841 cgcagctatc gcgacatcga cgtgtggatg acgcgttctt atcgtttcca tcaccgcgcg
      901 agcctgcgcg tcggtggcgc tcttctgcgt taccacgacg atgtccgctc gctcaagcga
      961 tcgcgacggc tcgcgcaatg gccccgccgg aagcaatccc gcatcgtcgc gcgagttctc
     1021 agcactcacc agcacgatat ccacgtcacg cgccgttctc cggtgctgga acccgtcgtc
     1081 aagcacgaca acgtcggctc ccgacgtggc ggccttccga attcccgcga cgcgatcggc
     1141 accggtaacc acgacgacac cgggattcat gcgcgcgtga agatgcagct catcgtcacc
     1201 atacccgcgc atcacgactg ctggacgatg tcccgcagcc atcagttcat gaacaagata
     1261 tgcgctgaac ggcgtcttcc cggtaccgcc gactgtgacg ttacccacgc tgaccaccgg
     1321 aacggaggca gaatgaacac gcagcgctcc cctgtcatac aacgcgttcc ggatcgcgat
     1381 cgcaccgcca tagagccagg aaagcggagt cactgccgcg cgcgcgagcc gcacgccggt
     1441 cgtgtttccg taccacagct cgtcgacggt cacgcgcgtc cgcgtccgtg tcgctgttcg
     1501 tgctgcggct cgttctgcag ctcgtgccct cgttcgtgct ttcgttcgtg catctccgcc
     1561 gtcgctacaa cggcgttgag cgatgcctcg aacgtctcgg cctgcatcgc cgcgccacgc
     1621 gagtcctgcg cattcacgta cgtcggatcg ctgtacgcga aagtgaggtg cgcaaagggc
     1681 ttggggatca tgaacccatc ccagctgcgc aggcgccacg cgcgcgacgc cgcgacgccc
     1741 acggtgacta tcggaacgcc ggctcggtgc gcggcgacag tggcgccatt cgcgaatttc
     1801 cgcgccggcc cacgcgggcc gtccggcgtc accgctatct cggttcccgg ctctgacgtc
     1861 agtgcatcac agatggcaag cagcgcccga gtcgcgccac gcgtcgtcga tccacggatg
     1921 gacccgaacc caagactctc cgtgatccgc gcgatcacct caccgtcacg atgctcgctg
     1981 atcagcacct tcaccccctg atgccggtgt tgtacggtca gcggcagcaa ctgcccatgc
     2041 catagtgcaa acacgaacga acggccctcc gcgcgcagcg cacgccagcc ggagtcgttc
     2101 accgtgctta cgcgccacgt cgagtacaga acacgcagca acgcggggcc gagcgcgaca
     2161 gccagccgct gaactcgcgt catgtgagtc cgcgccggcg ctgcttcgct catcctgcga
     2221 gccctgagat catctccgcc acgcggccag cggcgccggg tgttcccagt tgatttctga
     2281 ccgcgatcag tccctctcgc tgcgcctcgc ggtacaccgc atcgtcgagc aaacgcccga
     2341 gttcggttgc aacctccatc ggcttcaacg catcctgcac aaactcgcgc gccacttcgc
     2401 gacccgcgac gacattgacg aggccgatgt acggaatctt gaccacgcgc cgggcgattg
     2461 catacgacag tccgccggtc cggtacgcga ccgccatcgg acactgcgcg atggcagcct
     2521 ccagcgtagt cgtgccgctc ttgcacagcg cgacgtcggc agcgcgaaac agatcgaacg
     2581 acgcgccgcg tacgacttcg aatggacagt ccagcgcatc gagattcact gtcggtgctc
     2641 cgtgcacgat cacgcgaagt cccggatgcc gccgcgcaag ctcgcgcccg ctctcgatga
     2701 acggcacgaa gtgacgtgcg atctcctgtt cccgactccc cggaaatagc gcgagcacct
     2761 tttcgtccgg agcgattccg agtcgcgtgc gcgcttccac acggctcggc agattcgtcg
     2821 cgcgatccag caacggatgc ccaacgaacg tggcgtcgat tccatatccc gcgagcaacg
     2881 gcgcttcgaa cggaagaatc acggcagctc tggtcaccag cctggcaagc tttggcaggc
     2941 gtcctgcgcc ccatgcccac acttgcggcg tgacataata cagaaccggc actccggcct
     3001 cgcgcgcggc tgccgcgacc ttcatgttga agccgggata atcgatcagc acaactacgg
     3061 cgacattacc agtcgcaagt cgcgcacgta gctgccgcag cagcgccgca tgcttcggta
     3121 tgtgctttat gatttccacg aagcccatca cagcaagctc cgcgtaatcc cgcgttatgt
     3181 cgacgccgct ctcgcgcatg tgcgcgccgc caacgcccgc ggtcttcaga tccgggcgga
     3241 tctcacgcag gtgcgccgcg acgctgcccg catgcatgtc gccggaggcc tctccggcga
     3301 cgaaaagaac ttcacgcacc gagcgatggg gcgttgcgct cgatgtcgcc gacaattctg
     3361 agcgcgactt ccagtgcgcg gcggcccgcg gcaccactca cgaccagcgg tgcgctgcca
     3421 ttgagcaccg acgcaaaact ctcgaattcg agcttgagcg gctccccctc gggtgcctcc
     3481 agtgcaatgc gctcgacgaa gtccgcgaga tccggcgtct tcccgcttgc tacaagcgca
     3541 tgcagatcgc cagccttctt caatcgaaag aactcgccgt taccagcggc aagatcgagc
     3601 gacagataac cactgggctg gaagatgcgc accttgcgca cccgttcacg cgagatgcgg
     3661 ctggccgtga tgttggcgac agcgccggat tcgaacgtta tccgtgcatt cgcaatgtcc
     3721 acggtctgag tgagcaccgg aatgcccacc gccgcgatat ttcccgcgcc ggaattgacg
     3781 agcgtcagaa tcaggtcgat gtcgtggatc atcaggtcga gcactaccgc gacgtccgat
     3841 ccgcgaatat tgaatggcgc cagccgatcg ctctcgataa agcgcggatt gctcacgtac
     3901 ggcaacgcgg cgcgaatcgc acgattgaat cgctcgacat gcccggtctg cactatcgca
     3961 ccggtccgct gcgcgatcgc gagcaacgca tcggcttcct cgacggtcgc cgtaattggt
     4021 ttctcgatca ggacgtgctt gccgcgctcg agtgccttgc tggcgaccgc gaaatgcctc
     4081 ggcgtcggaa ccacgactgt cacggcatcg acgtcgtcga gcagtgtttc gagatcgctg
     4141 tagctcggga cttccagttc ggacgatacc tgcgccgcac gctccggccg ctcctccaca
     4201 aaccccgata gccggaactc cggcatctgg cgcagcaacc gaacatgatg atagccgagc
     4261 gcgccagccc ctactacacc gatgcgcagt ggcttcaaat tgcgactccg cgctggctcg
     4321 attccacgaa ctgcaccagc tgcctgactt cgggaatctg ctccacctct gccgttactc
     4381 gctcgacggc ctgcgccaga ttgagctccg agcggaacaa cagcctgtag gcccgcttca
     4441 actcgagaat ggtttcggct gtgaatccgt tacgccgcag tcccaccgaa ttcaacccgt
     4501 acaacttcat cggattaccg acggccttga cgaacggcgg aacgtccttc gacacgcgcg
     4561 agcaaccgcc aacgatcgcg ttgcgtccga ttcgcgtgaa ctggtgcacc gctgtcacgc
     4621 ccgagagaat cacgcgatcc tcgacggtta cgtggcccgc gagctgcacc atgttcgcca
     4681 gaacgactcc ctcgccaatg tgacagtcgt gcgcgaggtg cacgtatgac attacgaagc
     4741 tgttcgcgcc gacgctcgtc ttgaacgatt gcgaagttcc gcgattgatc gtgctgtact
     4801 cgcgcaccac ggtattgtcg ccgatctcga cggtcgtgcg ctcgcccttg aacttgagat
     4861 cctgcggatc gctgcccaga acggtgccta ctccgatctt cacgttcctg ccgagtatca
     4921 cgtaacgctc gaggctggca cgcgccgata tcacgcagcc gtcgccgatc acgcagtcgt
     4981 cgcccacgat tgcaaacggt ccgatctcca cgccgtcacc gatctcggca gacgacgaaa
     5041 cgatcgcgct cggatgaatt ttcgcggtca tctatcgcgc accatcgcgg ccatctccgc
     5101 ctcggcaacc agctcgccgt cgaccttcgc gacaccccgc atcttgcaca ccgcaccgcg
     5161 aatctggatt acgtccagct cgaatcggat ctgatcgccc ggcctgacgg gcttccgaaa
     5221 gcggacgttg tccagcgaca tgaagtacac gactttctgc tcggccgcct cgagcccacc
     5281 catcagcagc atgccgccaa cctgagccat cgcctcgatt atcagcacac ccggcatgat
     5341 gggatgcccg gggaagtgtc cctgaaagaa tggctcgttg atcgtgacgt tctttattcc
     5401 gacgattcgc tgcttcccct cgatctcgag tattcgatcg atgagaagaa acggatatcg
     5461 gtgcggaaga accttcatga tctcttcgat cgacatcgtt cccgccatgc tcttcgctcc
     5521 ttgctctgtt ggtctgccgc gccgccccgc gcgtaccatt tcccgaacca gcgtcactgt
     5581 gccgcgatgg cttggcctca ccgcgacgat tcgcgccttt acacgcgagc cgaccagcgc
     5641 cagatcaccc acacagtcca gcgccttgtg tcgcagaaat tcatcatccc agcgcaatac
     5701 gttcgcgacg acgccagtgt cgtcgagaac cactgcattg tcggtagaag cgccctggat
     5761 gagccctttt gcacgcagct cctcgacttc gttgagaaag ccaaaggtcc gcgcggctgc
     5821 catctgatcg cgatagctct cccgaccaac aacatagcgc gccgattggc gtccgataac
     5881 cgggtgggga aactcgatcg tcacatccag cgaaagctcg ttggccggat gtgcctcgta
     5941 tacggaattg ccgtcgatca cccggagagg ctcggtgagc gtgaggtatt ccggctgtcc
     6001 cggaagctct tcgatccccg tgccgatcag ggcgtcgtag aacggggccg cgctgccgtc
     6061 gagtataggt ggctccggcc cgctcatgtc gatcatcaga tcgtcgatct cgagtgccgc
     6121 aaccgctgag agaacgtgct ccactgtgtg gatcgccgcc tcgcccgatc ccagctgcgt
     6181 tctgcgttcc gtggccgtaa cctgatccac gtgcgccgga atcacgggct tgtccgccag
     6241 gtccacacgt cggaacgtga ttccctcgcc cgcgcctgca gggcggaatg tc
//
LOCUS       DATIMD010000394         2388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1602332, whole genome shotgun sequence.
ACCESSION   DATIMD010000394 DATIMD010000000
VERSION     DATIMD010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2388
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1602332"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1882)
                     /locus_tag="VLI40_08715"
     CDS             complement(<1..1882)
                     /locus_tag="VLI40_08715"
                     /inference="COORDINATES: protein motif:HMM:NF027637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HSU97299.1"
                     /translation="MIVSRHAGRPQPGPLAPLIAPLLAPLVALLAVSACMPSPGIAPT
                     PAASTTDTTGADSGRAGGPHVSVKPYAEVITKNAKTRVGLFKTHRVGDTLYFEIPAKE
                     LNRDMLLVGRYARTAAVDANNPFGAYGGDEFGERTLRWERSGNRVILRSPSFAIMADT
                     SLPIYRAVQSGSYAPIIAIFDVAAYGPDSAAVIDVTRLYTTDVPEFAAIHGQVDDKRS
                     YIENAVAFPDNVEIEATQTGIPQPSGGSSTARDREAAISVLAHWSMVRLPTRPMLPRL
                     ADDRVGFLSVTRTDYGTKQYRSVEREYINRWRLEKKNPGAGVSDPVKPIVYYIDPATP
                     EQWKPWIRKAVLDWQPAFEAAGFSNAIIPMDPPTDDPDWSPDDVRHTVIRWLPSTAEN
                     AVGPHVADPRTGEILNGSIRVFHNVLNLNRDWYFTQVAPLDPRAQHWPMPDSLMGRMV
                     EYVVAHEIGHTLGLAHNFKASSMYPADSVRSRTWVHRMGHTPSIMDYARYNYVAQPED
                     SIDVNDLVPRVGPYDRFAIMWGYTPITGATTPEQERPALDSIARMQDSVPWYRFGHLA
                     ESRADNPDPGDEVEAVGDADAVQSTGYGLKNIERTMPMLLRVTQKPGEDNSDLEEIYG
                     RLV"
     gene            complement(1926..>2388)
                     /locus_tag="VLI40_08720"
     CDS             complement(1926..>2388)
                     /locus_tag="VLI40_08720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU97300.1"
                     /translation="GYLTAVSVSAYSMIALASKLSPLMRDGGSLLSLTYMASERAIPG
                     YGGGMSSAKAALESDTRVLAYEIGRRYGHRVNTISAGPYASRAASAIGIIERMVEYCE
                     RNSALPQKLSADEVGTAAAFLCSPLASGITGSTVYVDKGYHAMGMAVTALE"
BASE COUNT          437 a          770 c          721 g          460 t
ORIGIN      
        1 ccacgagcct gccgtaaatc tcttccagat ccgagttgtc ctcgccaggc ttctgcgtca
       61 cacgcaacag catgggcatc gtgcgctcga tgtttttgag cccataaccg gtggactgca
      121 ccgcgtcggc gtcaccaacc gcctccacct catcgcccgg atccggatta tccgcgcgtg
      181 actcggcgag atgaccgaat ctgtaccacg gaacgctatc ctgcatgcgc gcgatcgagt
      241 cgagcgccgg acgctcctgc tccggcgttg ttgctccagt gatgggagtg tagccccaca
      301 ttatcgcgaa cctgtcatac ggcccgacac gcggaacgag atcgttcacg tcgatcgagt
      361 cttccggctg cgcaacgtaa ttgtaccgcg cgtagtccat gatgctcggc gtgtgtccca
      421 tgcgatgcac ccacgtgcgc gagcgcacgg aatccgccgg atacatcgag ctcgccttga
      481 agttgtgggc gaggccgagc gtgtgaccga tctcgtgcgc aacgacgtac tcgaccatgc
      541 ggcccatcag ggagtccggc atcggccagt gctgcgcgcg tggatcgagt ggcgctacct
      601 gtgtgaaata ccagtcgcga ttgaggttga gaacgttgtg gaacacgcgg atcgagccgt
      661 tcagtatctc gcccgtgcgc gggtcagcca cgtgcggtcc gactgcgttc tctgcagtcg
      721 atggaagcca gcggatcacc gtgtgacgca cgtcgtccgg cgaccagtcg gggtcgtcgg
      781 tgggtggatc catcggtatg atggcgttgg agaaacccgc tgcctcgaat gccggctgcc
      841 agtcgagcac cgccttccgg atccacggct tccactgctc aggtgtggca ggatcgatgt
      901 agtacacgat cggcttcacc gggtcggaca cacccgcgcc gggattcttt ttctccaggc
      961 gccagcggtt gatgtactcg cgctccacgg agcgatattg tttggttccg taatccgtgc
     1021 gcgtgacgct cagaaatcca acgcggtcat cggcaagacg cggcagcatc ggtcgagtcg
     1081 ggaggcgcac catgctccag tgcgcgagca cgcttatcgc tgcttcacga tcgcgagccg
     1141 tcgacgaccc accactcggc tgaggaattc ccgtttgcgt cgcttcgatt tcgacgttgt
     1201 cgggaaaggc gaccgcattc tcgatgtacg agcgcttgtc atccacctgg ccgtgaatcg
     1261 cggcgaattc cggaacgtcg gtcgtataga gacgtgtcac atcgatcaca gcggcactgt
     1321 cgggtccata cgccgcgacg tcgaagatcg cgatgatggg tgcgtaactg cccgactgca
     1381 ctgcacgata gatcggcaac gacgtgtcgg ccatgatcgc gaacgatggc gaccgtagta
     1441 tcacgcgatt gccggaacgc tcccatctga gggtgcgctc gccaaactcg tcaccgccgt
     1501 aagctccgaa tggattgttc gcgtccaccg cggccgtgcg tgcataccgc ccgaccagca
     1561 gcatgtcgcg attcagctcc ttagccggaa tctcgaagta cagcgtatcg ccaacgcgat
     1621 gggtcttgaa cagcccgacg cgcgtcttcg cgttcttcgt gatgacttcg gcgtatggct
     1681 tgaccgaaac gtgcgggcca ccggcccgcc ccgaatctgc cccggtcgtg tcagtcgtcg
     1741 atgcagccgg cgtcggagca atgcccggcg atggcatgca tgcggaaacg gcgagcaacg
     1801 cgacgagggg cgccagcagg ggcgcgataa ggggcgcgag cggtccaggc tgtggccggc
     1861 cggcgtgtct tgagacgatc atcggctact gttacacgcc aattttctga ccgggtcctc
     1921 gctgcctact cgagcgctgt tacggccatc cccatcgcgt ggtacccctt gtccacgtac
     1981 acggtgcttc ccgtgatccc actggccagc ggcgagcaga ggaacgccgc cgcggtcccg
     2041 acctcgtcag cgctgagttt ctgtggcagc gccgaattcc gctcgcagta ttccaccatc
     2101 cgctcgatga tcccgatcgc gctggccgca cgcgatgcgt atggcccggc ggaaatcgtg
     2161 ttcacacgat gcccgtatct ccgcccgatc tcgtaggcga gcacccgggt atcgctctcc
     2221 aaggccgcct ttgccgacga catcccacca ccataacccg ggatcgcgcg ctccgaagcc
     2281 atgtaagtta gcgacagcaa cgagccacca tcgcgcatta atggcgacaa tttcgacgca
     2341 agcgcaatca tcgaatacgc gctgacactc acggcagtga gatagccg
//
LOCUS       DATIMD010000395         4106 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5069200, whole genome shotgun sequence.
ACCESSION   DATIMD010000395 DATIMD010000000
VERSION     DATIMD010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4106
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5069200"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..417)
                     /locus_tag="VLI40_08725"
     CDS             complement(<1..417)
                     /locus_tag="VLI40_08725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97301.1"
                     /translation="MTQTAQRQVPSSNGAKPDLHTFEHHWQDEADAAYLYDILANLEK
                     DSHKSDVFRRLSAVERRHLEIWANLIRENGGTTKPFRPTARTRLLAVLGKLLGPGFLL
                     PMLLAEEGREVKGYMDMHRATPRGAPGGPEALLLARE"
     gene            complement(535..942)
                     /locus_tag="VLI40_08730"
     CDS             complement(535..942)
                     /locus_tag="VLI40_08730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97302.1"
                     /translation="MQQSKLVAALVIIGAFIAGGAIGVAGDRALRPDTHSGPVDSRTF
                     WDRTATEWGLSPAQRTVVDSLMDAQRKKISAIYKPLRPTMDSVDALAHLVSDSTQDAL
                     RRVLNPDQQKKLDALRAEMRKHDAERRARRLKM"
     gene            complement(949..1344)
                     /locus_tag="VLI40_08735"
     CDS             complement(949..1344)
                     /locus_tag="VLI40_08735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97303.1"
                     /translation="MTDNQIRLDEPLPDDVIATARDMYAPPGGDAYWSALESRIMARI
                     GDSAAGRWWMVVGSWARGSLVAAAAIIVATVVGALLLQARDQELRTAYESATQPSITQ
                     QVTVPTGALSERDGPDTRDATFREVISSH"
     gene            complement(1344..1895)
                     /locus_tag="VLI40_08740"
     CDS             complement(1344..1895)
                     /locus_tag="VLI40_08740"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSU97304.1"
                     /translation="MNEPSRNPSDERILTAAAQQGDQAAFGMLVQLHAKRAYAVARAI
                     VTVHEDAEDAVQEAFVRAYQALDRFNLEQSFGPWLNRIVANAALDLARRRKVRTTDEL
                     HESLAGSFRDPGEADELRRRLGEALAQLPERMRSVLVLHDIEGFAHSEIGKTLGIPEG
                     TARSDLHHARQRLRGMLRDLRND"
     gene            complement(2011..3063)
                     /locus_tag="VLI40_08745"
     CDS             complement(2011..3063)
                     /locus_tag="VLI40_08745"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HSU97305.1"
                     /translation="MASEPGSKRKIIIPIVIVVAVLAAIWGFKTWNYSRAHESTDDAQ
                     VDGHIIPVLAKVGGYVTSVSADENQHVNENQILVTLDDAEYRVRVESAQADLAAAQGV
                     AGTRTTQGQAEGQVATASGQRSQLDAQVLAAQAANTNAQANLARMKDLAAKQIVSKQQ
                     LDAAQAAAAAAEAQLLAAQRQVTTAGSQISTAQAGVRIAEARSSAAQAALDNAKLQLS
                     YTRITAPASGLVARKQVEVGQLVTAGQPVMNIVADTGVWVTANFKETQLNDIKVGQPV
                     DFDVDAYGGCTAKGKVESLSGATGAKFALLPPDNATGNFTKVVQRVPIRIAVTKGCPD
                     HPLRPGLSVNVHVATQ"
     gene            complement(3084..>4106)
                     /locus_tag="VLI40_08750"
     CDS             complement(3084..>4106)
                     /locus_tag="VLI40_08750"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU97306.1"
                     /translation="PFRVLDARGSVAAPLFNFGAFARYRAAGAAVKASSAAATVASEQ
                     AGAQAALAYVQALRAEDDFRARGEDSVLAADLVSVAQAQLDAGTGIALDVTRAQAQLA
                     STRAGLINSRAARDRTLIALARALNVPARTPLVLTDSLGGMDTTAVTMDEAAATERAL
                     QNRPDLLQAQARIAAAQQAVSAIRAEYLPTVSLVADDGINGLSVHHMLNTYEYGLQVS
                     VPVLDGFRRSGRIQEQQGLVREAQVEQQDIRQQAAADVSTAILDLHAAEQQVQATREQ
                     LRLAEQEVSQARERFRAGVAGNADVITALLGLTTARTAVIDAQTNFQTARVALARAQG
                     VVTTLP"
BASE COUNT          679 a         1346 c         1280 g          801 t
ORIGIN      
        1 ctcgcgcgcg agcaacagcg cttcgggacc acctggcgca ccacgcggag tcgcgcggtg
       61 catgtccatg tatcccttga cctcgcgccc ttcttccgca agcagcatcg gcagcaggaa
      121 gccgggcccg agcagcttgc cgaggactgc gagcagtcga gtgcgcgcgg tcggcctgaa
      181 cggctttgta gttccgccat tttcgcggat cagattggcc cagatctcca ggtgacgccg
      241 ttcgacggct gaaaggcgcc ggaaaacatc acttttgtga ctatcctttt cgagattggc
      301 gaggatgtcg tagaggtagg ccgcgtcggc ctcgtcctgc cagtggtgct cgaaggtatg
      361 gaggtcgggc tttgcgccgt tcgacgatgg aacctgccgc tgcgcagttt gtgtcatgcc
      421 gtaatatcgc gcagccgtca atttttttcg acggggaaga ggcggataag cacggaggcg
      481 cgacggatat cgtcattccc gcgaaagcgg gaacgacgac ttaccccagc cgtcctacat
      541 cttcagtcgt cgcgcccgtc gctcggcgtc atgcttccgc atctcggcgc ggagagcgtc
      601 gagctttttc tgctggtcgg ggttgagaac gcggcgaagc gcatcctggg tgctgtcgct
      661 gacgaggtgc gccagcgcgt cgaccgaatc catcgtcggg cggagcggct tgtagatcgc
      721 ggaaatcttc ttgcgctgag cgtccatcag agaatcgacg accgttcgtt gcgcagggct
      781 cagcccccac tcggttgcgg tgcgatccca gaaggtgcgt gagtcgaccg gaccgctgtg
      841 ggtatccggg cgcagagcac gatcgccggc cacgccaatg gcgccgccgg cgatgaaggc
      901 cccaatgatc accagagctg cgaccagctt ggactgttgc atcaagtgct agtgagagga
      961 aatgacttcg cggaaggtag cgtcgcgcgt gtccggcccg tcacgctcgc tcagcgcgcc
     1021 tgtgggaaca gtcacctgtt gcgtgatgct cggctgcgtg gccgactcgt acgccgtacg
     1081 cagctcctgg tcgcgcgcct gaagcagcaa tgcgccgacg accgtcgcca cgatgatcgc
     1141 cgcagccgcg acaaggctac cgcgtgccca gcttccaacc accatccacc agcgtccagc
     1201 ggcggagtcg ccgatgcgcg ccatgatgcg cgactccagt gcgctccagt acgcgtctcc
     1261 gccgggaggc gcatacatgt ctcgcgcagt ggcgatcaca tcgtccggca gcggctcgtc
     1321 gagcctgatc tggttgtctg tcatcagtcg ttcctcaagt cgcgcaacat tccccgcagc
     1381 cgctgtcgag cgtggtgcag gtctgatcgc gccgttcctt ccggtatccc gagcgtcttt
     1441 ccaatctcgg agtgtgcgaa cccttctata tcgtgcaaga ccagcaccga tctcatcctt
     1501 tccggcaact gcgccagtgc ttcacccaac cggcgccgca gctcgtccgc ttcaccagga
     1561 tcgcggaagc ttcccgcgag cgattcgtgc agctcatcag ttgtacgtac cttccgtcgc
     1621 cttgcaagat ccagtgccgc gttggccacg atccggttga gccatggtcc aaatgactgc
     1681 tccagattga atctgtccag cgcctgatac gcgcggacga aagcttcctg aacagcgtcc
     1741 tctgcatctt cgtgcacagt tacaatcgct cgtgcgacag catacgcacg cttcgcatgc
     1801 aactgtacga gcattccgaa cgccgcctga tcgccctgct gggcggcggc ggtcagtatc
     1861 cgctcgtcag aaggattacg cgacggttcg ttcacgcgtt gaatggaggg gctgggaggt
     1921 ggggacaccg ccgggaaatc taaaccccgg tcgaccactc gcccgcccag cgccaccact
     1981 cgccgtgctg ctcccctgct actcgccgtg ctactgggtc gctacgtgaa cgtttacgga
     2041 gagccccgga cgcaagggat ggtcagggca ccccttcgtt accgcgatac ggatcggaac
     2101 acgctggacc accttggtga agttccccgt cgcgttgtcc ggcggaagaa gcgcaaactt
     2161 cgccccggtc gctccgctca ggctctcgac ctttcccttg gccgtacaac cgccgtacgc
     2221 atcgacgtcg aagtcgactg gctgcccgac cttgatgtcg ttgagctgcg tctccttgaa
     2281 gttcgccgtc acccacactc cggtgtcagc gacgatgttc atgacaggct ggcccgcggt
     2341 gacgagctgg ccgacttcga cctgcttgcg cgcgaccagg ccactcgccg gagccgtgat
     2401 gcgagtgtag ctgagctgca gcttcgcgtt gtccagcgcg gcctgtgcgg cgctcgaacg
     2461 cgcttcggcg attcgcacgc ccgcctgtgc ggtggagatc tgcgagcccg ccgtcgtcac
     2521 ctggcgctgt gctgcgagga gttgcgcttc ggctgcggct gcggctgcct gcgccgcgtc
     2581 gagctgctgc ttcgaaacga tctgcttcgc cgccagatcc ttcattcgtg ccagattagc
     2641 ctgcgcattg gtgtttgccg cctgcgccgc gagaacctgc gcgtcgagct gcgaccgctg
     2701 gcccgacgct gtagccacct gtccttccgc ctggccctgg gtggtcctgg tgccggcaac
     2761 tccctgcgcc gcggcgagat cggcctgtgc cgactccaca cgaacgcgat actcggcgtc
     2821 gtccagtgtt acgagaatct ggttctcgtt cacgtgctgg ttttcgtccg ccgaaacgct
     2881 ggtcacgtag ccgccgacct tggcaagaac gggaatgatg tgtccgtcca cctgtgcgtc
     2941 gtcagtgctc tcgtgagcgc gtgaataatt ccacgtcttg aaaccccata tcgccgcgag
     3001 aaccgcgacg actatgacga tggggatgat gattttgcgc ttgctaccgg gttcgcttgc
     3061 catgtttacg agagagttag tgctcaggga agggtcgtga caacgccttg cgcgcgcgcg
     3121 agcgcgacac gagccgtctg gaaattcgtt tgcgcatcga ttactgcagt ccgcgccgtg
     3181 gtcagtccga gcaaggccgt gatgacgtca gcgttgccgg cgacgcccgc gcgaaaacgt
     3241 tcgcgtgcct gcgagacttc ctgttcggcg agtcgcagtt gctcccgcgt cgcctgcacc
     3301 tgctgttccg ccgcgtggag atccagaatc gcggtgctca catccgcggc cgcctgctgt
     3361 cgtatgtcct gctgctcgac ctgcgcttca cgaaccaggc cttgctgctc ctgaatgcgg
     3421 ccggagcgcc ggaatccgtc aaggaccggc accgatacct ggaggccgta ctcgtacgta
     3481 ttcaacatgt gatgcactga cagcccgttg ataccgtcgt ctgcaacgag cgaaacagtc
     3541 ggcagatact ccgctcgaat cgcactgaca gcctgctgcg cggcggcgat acgcgcctgc
     3601 gcctgcagca gatcagggcg attttgcagc gctcgctccg tggctgccgc ctcgtccatg
     3661 gtcacggcgg tggtgtccat accgcccagt gaatcggtca gaacgagtgg ggtgcgcgcg
     3721 gggacgttga gtgcgcgagc aagtgcgatg agcgtcctgt cgcgggctgc gcgggaattg
     3781 atgagaccgg cgcgcgtcga agcgagctgt gcctgagcgc gcgtaacgtc cagagcaata
     3841 ccggttcccg catcgagctg cgcctgtgcg acactcacga gatcggcggc cagcacactg
     3901 tcctcgccgc gcgcgcggaa atcatcttcc gcacggagcg cctgcacgta cgcgagcgca
     3961 gcctgcgcgc cggcctgttc cgatgctacc gtcgcagcgg cgctgctcgc tttcacggcc
     4021 gcgccagcgg cgcggtaccg tgcgaacgcg ccaaaattga acaacggtgc cgccacgctt
     4081 ccgcgcgcat cgagcacgcg aaacgg
//
LOCUS       DATIMD010000396         3008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3332426, whole genome shotgun sequence.
ACCESSION   DATIMD010000396 DATIMD010000000
VERSION     DATIMD010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3332426"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1828
                     /locus_tag="VLI40_08755"
     CDS             <1..1828
                     /locus_tag="VLI40_08755"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSU97307.1"
                     /translation="DVPPPRLHKLGGRRWGQQRDRTRAAIQEMTVELLDLYARRSVAT
                     RTPALPDSTWQRQLESSFLFEDTNDQRKATVDVKGDMERPRPMDRLLVGDVGYGKTEI
                     AVRAAFKAVQSGRQVAVLVPTTILADQHARTFGDRFADFPVVVKVMSRFQTHKEQLET
                     LKEVAAKKVDVVIGTHRLLSPDVTFGDLGLIIIDEEHRFGVKHKERLKQLRLETDVLT
                     LTATPIPRTLHQSLAGLRDMTLMQTAPRDRSPVLTYVEPWDEALIEEGISRELDRGGQ
                     VFFVHNRIETIDAIAQHIGRLVPRARIAVGHGQMRERELEEVMRRFVQGEVDVLVSTM
                     IVESGLDVPNANTMFVNRADMFGLAQLYQLRGRVGRSHRRAYCYLLAADGMDDDSERR
                     LKILEHHTELGSGYRIALKDMELRGAGNLLGPEQSGFVHAVGFDLYLKMLEETVQHVM
                     RGGDGPKLQPADVSLDVAAYIPDEYMPSQDAKLDVYRRLTSMTEPEEIAGLRAEVRDR
                     FGTLPPEAAHFFMAATLRVLGGRIGIETLSVRGNEARITFRGSAVPSMKGISSAFHEV
                     QFQAEVRRAHPLSLKLTRLGGASVLDGLVHALTLIKPTPTTR"
     gene            1825..>3008
                     /locus_tag="VLI40_08760"
     CDS             1825..>3008
                     /locus_tag="VLI40_08760"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF025002.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSU97308.1"
                     /translation="MKSASLALAAAAAFVVTATACAGLKEAMSAHVDTAAKAGSQELS
                     VDRLAKLLGEATVPPRKDVAQAIANAWVDYELLGQSAAKGDTVVTDKALDSALWAPIS
                     SLKAKKYYEMVSKDWGTADSASARKMFENGDILAASHILILTKGAPADQKAAAKKKIE
                     ALRAQATSANFAALAKANSQDTPSAARGGSLGLFKKGAMVPQFEQALLALKPGEISPV
                     IETEYGYHIIRRPTYDEVKDQLLQASKGRSMQQAESTFVAKLQSDGKIDMEKDAATTA
                     RVVVADPDAHRNDKTTIANSTAGKFTAAELARWIATFPPMQQSQQRGQLQNAPDSIVV
                     MFVKNFVTNDLVLRAADNAKIGPTPAELTQLHNAFFQSRDAAWTQLGIDPKSLADSAK
                     TET"
BASE COUNT          607 a          926 c          960 g          515 t
ORIGIN      
        1 cgacgttccg ccaccgcgcc tgcacaagct tggcgggcga cgctggggtc agcagcgtga
       61 tcgtacgcgc gcggcgattc aggagatgac cgtggagctg ctggatctgt acgcgcggag
      121 aagtgtcgcg acgcgcacac ccgcgctgcc cgacagtacg tggcaacgtc agctcgaatc
      181 gtcgttcctg ttcgaggaca ccaacgatca gcgcaaggcg accgtggatg tgaagggcga
      241 catggagcgc ccgcgcccga tggaccggct gctggttggt gacgtcggct acggcaagac
      301 cgagattgca gtacgcgcgg cgttcaaggc ggtgcagtcg ggaaggcagg tcgcggtgct
      361 cgttccaacg acgattctcg cggatcagca cgcacgaact tttggcgatc gcttcgcgga
      421 tttcccggtg gtcgtgaagg tcatgagccg gttccagact cacaaggaac agctcgagac
      481 gctcaaggaa gtcgcggcaa aaaaggtcga tgtcgtgatc ggcacgcatc gtcttctcag
      541 tccggatgtg acattcggcg atcttggtct catcatcatc gatgaagagc atcgctttgg
      601 agtaaagcac aaggagcggc tcaagcagct ccggttggag acggacgtgc ttacactcac
      661 agcaacgccg atcccgcgca cgctgcacca gtcgctggcg ggattgcgcg acatgacgct
      721 gatgcagacg gctccgcgcg atcgctctcc cgttctcacc tacgtcgagc cgtgggacga
      781 ggcgttgatc gaggaaggaa tctcgcgcga gctggaccgg ggcgggcagg tcttcttcgt
      841 gcacaatcgc atcgagacca tcgacgcgat cgctcagcac atcggccggc tggtgcctcg
      901 cgcacgcatt gctgtgggac acggtcagat gcgagagcgc gagctcgaag aagtgatgcg
      961 ccgcttcgtt cagggtgaag tggacgtgct cgtatcgacc atgatcgtcg aatccggtct
     1021 cgacgttccg aatgcgaata cgatgttcgt gaatcgcgca gacatgttcg gactcgcaca
     1081 gctgtatcag ctacgcgggc gggtcggacg ttcgcacagg cgcgcgtact gttatctcct
     1141 ggcggcggat ggaatggacg atgattccga gcgccgtctc aagattctcg agcatcacac
     1201 cgagctcggc tccggctacc gaatcgcgct caaggacatg gagctgcgtg gtgccggcaa
     1261 cctccttggg cccgagcagt ccggattcgt gcacgccgtg ggcttcgacc tgtatctcaa
     1321 gatgctggag gagacggtcc agcatgtgat gcgcggcggc gacggcccca agctgcagcc
     1381 ggcggacgtc tcactcgacg ttgcggcata tatccccgac gaatacatgc cctcgcaaga
     1441 cgccaagctg gacgtctacc gccggctcac ttcgatgacc gagccggaag agatcgccgg
     1501 gctgcgcgcg gaagtgcggg accgattcgg cacgttgccc cccgaggcgg cgcatttctt
     1561 catggcggcg accctgcgcg tactgggagg gaggatcggg atcgagactc tttcagtgcg
     1621 gggcaacgag gcgcgtatta cctttagagg ctcggcggtc ccatcgatga aagggatctc
     1681 ttcggcgttc cacgaggtac aatttcaggc cgaggtgcgc cgcgcgcatc cattatcgct
     1741 caagctcacc cggctcggcg gcgcgtccgt gctggatggg ctcgtccacg cactcacgtt
     1801 gatcaaaccc actccaacaa caagatgaaa tcagcttcgc tcgcccttgc cgctgccgcg
     1861 gctttcgttg taaccgcgac agcgtgtgcg ggcctcaagg aagcgatgag cgcgcacgtc
     1921 gatacggcag caaaggccgg atcgcaggaa ctctcagtcg atcgtctcgc caagctgctc
     1981 ggcgaagcga cggtaccgcc gcgcaaggac gtcgcacagg cgatcgccaa tgcgtgggtg
     2041 gattacgagc tgctcggcca gtcggccgcg aagggcgata ctgtcgtcac cgacaaggcg
     2101 ctcgactccg cactctgggc accgatctca tcgctcaagg cgaagaagta ctacgagatg
     2161 gtctcgaagg actggggtac ggctgacagc gcctctgcac gcaagatgtt cgagaacggc
     2221 gacatcctcg ctgcgtcgca catcctgatc ctcaccaagg gagcgccagc cgatcagaag
     2281 gcagctgcga agaagaagat cgaggcgctt cgtgcacagg cgacgtcggc gaatttcgcc
     2341 gcgctcgcca aggccaacag ccaggacacg ccgtcagccg cacgcggtgg ctcgctcggc
     2401 ctgttcaaga agggtgcgat ggttccgcag ttcgagcagg cgctgctcgc gctcaagccc
     2461 ggcgagatct cgccggtcat cgagaccgaa tacggatacc acatcattcg ccgccccacg
     2521 tacgacgaag tgaaggacca gctgctccag gcgtccaagg gtcgctcgat gcagcaggcc
     2581 gagagcacat tcgtcgcgaa gctgcagtct gatggcaaga tcgacatgga aaaggatgca
     2641 gcgacaaccg cgcgcgtcgt ggttgccgac ccggacgcac atcgcaacga caagaccaca
     2701 attgcaaact cgaccgcggg caagttcacc gccgccgagc tggcacgatg gatcgcgacg
     2761 ttcccgccga tgcagcagtc gcagcagcgc ggacagttgc agaacgcgcc ggattcgatc
     2821 gtggtgatgt tcgtcaagaa cttcgtcacc aacgatctcg ttctgcgcgc cgctgacaac
     2881 gcgaagatcg gaccgacgcc ggcagagctg acccagcttc acaacgcgtt cttccagtcg
     2941 cgtgacgccg cctggactca gctcggtatc gatcccaagt cgctcgccga cagcgcgaag
     3001 acggagac
//
LOCUS       DATIMD010000397         7399 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_158827, whole genome shotgun sequence.
ACCESSION   DATIMD010000397 DATIMD010000000
VERSION     DATIMD010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7399
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158827"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VLI40_08765"
     CDS             <1..300
                     /locus_tag="VLI40_08765"
                     /inference="COORDINATES: protein motif:HMM:NF014460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU97309.1"
                     /translation="AVGVGMAFLTSIVATDILPSDFMAGLQLAFAPFQIVYSLIKATV
                     FGAAISFFCSYEGYNANAGAEGVGRSTATAVVITSVAILVLDAVTALLLAPYLQA"
     gene            314..1195
                     /locus_tag="VLI40_08770"
     CDS             314..1195
                     /locus_tag="VLI40_08770"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HSU97310.1"
                     /translation="MKKTRDDILVGVVIVVGLVIAIVGSLWLARGGLSKGYPLYARFA
                     WGAGLKTGAPVWVSGAAVGYVSDVQFRPDGTLLTQLRITSDQPIPKSSPATVVPNGIF
                     GDVAVNFTPKHSTARYTEGDTVISGAAVAGLSQLTAKADSITTSVASLTSAMNKELVA
                     GGGLADLGATLAGTNKLVAQLSAIAAAQSTQLTATMTSLRRATSAVDSAKIDSTLSNL
                     RTASGNMSSLTMSLDSTGRALTQIVAKVDSGNGSAAKLINDPALYNDMHALLGRMDSL
                     VADIKKNPKRYINVKVF"
     gene            complement(1316..4591)
                     /locus_tag="VLI40_08775"
     CDS             complement(1316..4591)
                     /locus_tag="VLI40_08775"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HSU97311.1"
                     /translation="MLKGRLFTTLGLATVCLLGNTRTANAQNVTSGSISGTVTDQTGA
                     PVPSAQVQITNTQTGITVNATAREAGRYSAQGLEVGGPYTVSVRRIGFTPITRTGILV
                     VLSQSTRVDFQLASQAAVLTGVKIEGSAGSIISPTKTGTGTIISGEQLSSLPTLSHNF
                     TDFVGIVPQVSNTTGYSSGGGVNIRQNAIQIDGAAAGDLFGLGATGQPGSQANAKAIP
                     LDAVKEYQVLLAPYDVRQGNFGGVLINAVTKSGTNEFHGSAYGYNRSQNMTRQQFYLP
                     DYSEKNYGFAVGGPIVKNHAFFYFNSEWRKTSQPAAGPYIGSPDAPVNQATIDNFNNV
                     LSNSYGFANGGSGGQVTKQNPATNVFGRVDIYLPFATRLVLRHNYSFANNTSFGRGAA
                     TSTSPNFGLTSNAYQFTSKTNSSVAEFLSNFSNGMFNELLLNYTKTADFRTVPALFPQ
                     VTVRNVPRTDGGTGTVSLVAGTEASSQGNVLNQRTFELTENFTVPVGSHRFTIGTKDQ
                     FYRPYNLFGQNSRGSWTFNSLTDFQSGKASAYAVSAPSPSDPAAGIATFEANMFAYYL
                     QDVWQTTDNLALTFGVRWDQPHFDQTPPSNPSVLTAYGRNTSTVPSKGQFSPRLAFNW
                     DVTGDQRNQLRGGIGYFTGPPPFVYLSNAFGNSGLSGYPALNCNGTTSATTSFVPPAF
                     NAANIASPPTACLASGTKPGGTLAFGSSINTIDPNFKFPQYQKISAAYDHRFANGMIS
                     TIEGLYTKSINDAFYTNLALVGPQGTDSHGRVLYGTPTATGWTPVTAGGRTQVLDLGN
                     SSGNYTYSVTGTLQKTFSTVFDGSLSYTYSQARDVASITSSTAGSNYRYARDVTGNLN
                     DFSLTRSKNDMPHRIIAIGTYHAKTLTDITVVYQGNSGSPYDYVYGAGGGSGSGDLNG
                     DGNSQNDLVYVPKDVRDPNEILFTGYNDVTKAASVASQQAALDKFINSVPCLRENRGR
                     MLSRNLCRNPWANEVDLSLTQSLQAFHTQNVSLRLDVLNFGNLINPKWGRQFFSDQGA
                     TCGSICSATVLMTQTGNKIGTTVNGVNSTQGVYTFDSTLRPYSAQNASSNYRMQLSLR
                     YSF"
     gene            complement(4678..6012)
                     /locus_tag="VLI40_08780"
     CDS             complement(4678..6012)
                     /locus_tag="VLI40_08780"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSU97312.1"
                     /translation="MPSALPRRIGLWSAVAVLVGSTVGSGIFRSPAGIADRLPGPLPM
                     LSLWVFGGLVALCGALTLAEIASAYPETGGVYVYIREGWGRIPAFLFGWAELVIIRAA
                     ALGAISTTFAEYLLRSTGHDPLTAPYSQWVHYVAAVSIGVMGILNYVGVKWGTLVQNT
                     LTILKCAGLLGIEIVALAALPHTGGHFTPVAPSGSFGFVPFALALTSVLWVYDGWADV
                     SFVGGEVKDPERNLPKVLIYGTLAVIALYLLANIAYLSVLSIDEMRHSQLVAADVAQR
                     LMGQPGVAAVGIVVMLSALGTLASSMLTGPRILFAMATDGLLFRQLGRVQPRFQTPGA
                     AILLATALGIIFVMLRTFEQLADTFVTAIIPFYALGVAAIFPLRKRKAGYRPAVRARW
                     FPVAPVVFVLAILYLLGSALADPVARIPTLAIFAVIFAGLIFYPFIKRTAVQ"
     gene            6065..6274
                     /locus_tag="VLI40_08785"
     CDS             6065..6274
                     /locus_tag="VLI40_08785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97313.1"
                     /translation="MELHRALFWACLVITVIAELLILRSAFFPPTDMVPADNMPRSPR
                     IVEMIWGVLPAVVLAVVFWMAWRAL"
     gene            6271..7278
                     /locus_tag="VLI40_08790"
     CDS             6271..7278
                     /locus_tag="VLI40_08790"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HSU97314.1"
                     /translation="MSTSEPRRSDGLARGPASTDGGLLLLRRLAYLATGLAFAQIVFG
                     AIVRITGSGMGCGDHWPTCQGYLFPPLERPDLIVEVTHRYIAATVTVAIIVLLVTAFM
                     RRAQRGVGGPGGVLRSAMLATGLVLVAAVFGGITVKLSLNPYIIVTHLAIAMTLLAVL
                     SIAALRAGGWGFDGTEVASPRTYRAARAAVILAFIVLVMGALTANVLGANASCQGFPW
                     CSKIAVTGTPLYIQVIHRILAFLLFFHVIGVAVAAQRRRESRQVRIAAWIALGAIVLQ
                     IAVAAGMVEMHLPPVWRSLHQAMGTLVWLSVFTLAALARYSLAERSEERATLQAAAAA
                     A"
BASE COUNT         1428 a         2086 c         2421 g         1464 t
ORIGIN      
        1 gccgttggtg tgggaatggc atttctgaca tcgatagtcg cgaccgacat tcttccgtct
       61 gatttcatgg cggggcttca gctcgcattc gcaccgttcc agatcgtcta ttcactgatc
      121 aaggctacgg tattcggcgc cgcgatctca ttcttctgct cgtacgaagg ctacaacgcg
      181 aatgcaggcg cagagggagt tggaagaagc acggctaccg cggttgtcat cacgtcggta
      241 gccatactgg tactcgatgc cgttaccgcg ctgctactgg cgccatacct tcaggcctga
      301 tccggctgac aatatgaaaa agactcgtga cgacattctg gtcggtgtag tgatcgtcgt
      361 tggacttgtg atcgccattg ttggatcgct gtggcttgcg cgcggtggac tgtcgaaagg
      421 ctatccgttg tacgcaaggt tcgcgtgggg agcgggcctc aagaccggcg cgccggtatg
      481 ggtgagcggt gcggcagttg gctatgtctc ggacgtgcaa tttcgccccg acggaacatt
      541 gcttacccag ttgcggatca cgagcgatca gccgattccg aaatcgagcc cggcgaccgt
      601 ggttcccaat ggaatattcg gcgacgtcgc cgtgaacttc acaccgaagc attccacggc
      661 acggtacacg gagggtgaca cggtgatcag cggagccgct gtcgccggcc tctcgcagtt
      721 gacggccaag gcggactcga tcaccacttc ggtcgcatcg ctcaccagtg cgatgaacaa
      781 ggagctcgtc gctggaggcg gcctcgccga cctgggcgca acgctggccg gaacgaacaa
      841 gctcgtggcg cagctgagcg cgatcgccgc agcgcagtcg actcagctga ccgccacgat
      901 gacgtcgctt cggcgcgcga catcggccgt ggattcggcc aagatcgact cgacgctttc
      961 gaatctcagg acggcgagcg gcaacatgag ctcgttgacg atgtcactgg attcgactgg
     1021 gcgcgcgctg acacagatcg tagccaaggt ggatagcggc aacggctcag cggcgaagtt
     1081 gatcaacgat cccgcgcttt acaacgacat gcacgcgctg ctgggacgga tggacagcct
     1141 tgtcgcggac atcaagaaga atccgaagcg gtacatcaac gtgaaggtgt tctagcccga
     1201 ctgctacgcc tgcagccagc cctgcagctg cagaacgaca gaaaaacaaa gcgccggcac
     1261 ggttcaaccg tgccggcgct ttgacttgtg gaacccgaac gagcttggga aaaggttaga
     1321 agctgtaacg gagcgacagc tgcatacggt agttcgacga cgcgttctgc gcgctatacg
     1381 gtcgcagcgt cgaatcgaac gtgtacacgc cctgggtcga gttgacccca ttgaccgtcg
     1441 tgccgatctt gttgcccgtc tgcgtcatga gcaccgttgc gctgcagatg ctgccgcagg
     1501 ttgcgccctg gtcagagaag aactgacgac cccacttcgg attgatcaag ttgccgaagt
     1561 tgagcacgtc caggcggagt gaaacgttct gcgtgtggaa agcctggagc gactgcgtga
     1621 ggctgagatc gacctcgttg gcccacgggt tgcggcagag attgcgggac agcatcctgc
     1681 cgcgattttc acgaaggcaa gggacgctgt tgatgaactt gtccagagcg gcctgctgcg
     1741 acgcaacgga agccgccttt gtcacgtcgt tgtaacccgt gaagaggatc tcgttggggt
     1801 cacgaacgtc cttggggacg taaacgagat cgttctgcga gtttccgtcg ccgttgaggt
     1861 cgccggaacc gcttccgcca cccgcgccat acacgtagtc atacggtgaa ccggagttgc
     1921 cctgatacac gacggtaatg tcggtaaggg tcttcgcatg gtacgtaccg atggcaatga
     1981 tacggtgcgg catgtcgttc ttgctgcgcg tgaggctgaa gtcgttgaga ttgccggtca
     2041 cgtcgcgagc gtagcgatag ttggaacccg ccgtgctgct ggtgatcgac gcgacatcgc
     2101 gcgcctggct gtacgtgtac gacagtgacc cgtcgaacac ggtggagaac gtcttctgga
     2161 gcgtaccagt gacgctgtag gtatagttgc cggaggaatt accgaggtcg agtacctggg
     2221 tgcgcccgcc cgccgtcacc ggagtccagc ctgtagcagt tggagttccg tagagcacgc
     2281 gtccatgcga atctgtgccc tgcggtccca ccagtgcgag gttggtgtag aaggcgtcgt
     2341 tgatcgactt ggtgtacaga ccttcgatgg tgctgatcat gccattcgca aaacggtgat
     2401 cgtacgccgc cgagatcttc tggtattgcg ggaacttgaa gttcggatcg atcgtgttga
     2461 tgctcgaacc gaaggcgagc gttccgcccg gcttggttcc cgaggcgaga caggccgtcg
     2521 gtggactcgc gatgttggcg gcgttgaatg caggcggaac gaacgacgtg gtggccgacg
     2581 tcgtgccgtt gcagttgagc gccggataac cgctgaggcc cgagtttccg aacgcgttcg
     2641 acagatacac gaacggaggc ggcccggtga agtatccgat accaccgcgc agctgattac
     2701 gctgatctcc cgtcacgtcc cagttgaatg caagccgcgg ggagaactgc cccttggacg
     2761 gcaccgtgct ggtgttgcgg ccgtaggcgg taagtacgct ggggtttgac ggaggtgtct
     2821 ggtcaaaatg cggctgatcc caccgcacgc cgaatgtaag ggcaaggttg tccgtcgtct
     2881 gccagacgtc ctgcagatag taggcgaaca tgttggcctc gaatgtcgcg ataccggcgg
     2941 ccggatcgga cggcgacggc gcgctcacgg cgtaggccga agcttttcca ctctggaaat
     3001 cggtgaggct gttgaacgtc cacgagccgc gcgagttctg gccgaacaag ttgtagggcc
     3061 ggtagaactg atccttggtt ccgatcgtga agcgatgcga acccacagga accgtgaagt
     3121 tttcagtcag ctcgaaagtg cgctgattga gcacgttgcc ctgagacgac gcttcggtcc
     3181 cggcaacgag cgacactgta cctgtgccac cgtcggtgcg cgggacgttc ctgaccgtca
     3241 cctgcgggaa gagtgctggc acagtgcgga agtcagccgt cttggtgtag ttcagaagca
     3301 gctcgttgaa catgccgttc gagaagttgc tgaggaactc ggctacggag ctgtttgtct
     3361 tgctggtgaa ctggtatgca ttcgatgtga ggccgaaatt cggggacgtg gaagtagcgg
     3421 cgccacggcc gaagctggtg ttgttcgcaa acgagtagtt atggcgcagt accagacggg
     3481 ttgcgaacgg gagatagatg tcgacgcgtc cgaatacgtt ggtggccgga ttctgcttgg
     3541 ttacctggcc acccgagccg ccgttggcga acccgtagct gttggacagt acgttgttga
     3601 agttgtcgat cgttgcctga ttgaccggcg cgtccggaga gccgatgtac gggcccgcgg
     3661 caggctggct cgtcttgcgc cactcggagt tgaagtagaa gaatgcgtgg tttttcacga
     3721 tcggaccgcc gaccgcgaag ccgtagttct tttcgctgta gtcgggcagg tagaactgct
     3781 gccgcgtcat gttctggctg cggttgtagc cgtaggcgga tccgtgaaat tcgttcgtgc
     3841 cgctctttgt gacggcgttg atgagcacac cgccgaaatt gccctgacgg acatcgtacg
     3901 gagccagcag aacctgatat tccttgacgg catcgagcgg tatcgccttg gcgttggcct
     3961 ggcttccggg ctgtccggtg gcaccgagac caaacagatc gccggccgcg gctccatcga
     4021 tctggatcgc gttctggcgg atgttgacgc cgccgcccga tgagtagccg gtcgtgttgg
     4081 aaacctgcgg cacgatcccg acgaagtccg tgaagttgtg cgacaacgtg ggaaggctgg
     4141 aaagctgctc accggagatg atggtgcctg tcccagtctt ggtaggcgat atgatacttc
     4201 ccgccgaccc ttcgatcttg acgcctgtca gcaccgccgc ctgactcgcc agctggaaat
     4261 cgacgcgagt cgactggctg aggacgacaa ggatgccagt ccgcgtgatc ggcgtgaatc
     4321 caatgcgacg gacggaaacc gtgtatgggc caccgacttc gagtccctgt gcgctatagc
     4381 ggccggcttc gcgcgctgtc gcgttgacag ttatcccagt ttgcgtattg gtgatctgta
     4441 cctgtgcaga cggaaccggt gcaccggtct gatcggtcac cgttccgctg atggagcctg
     4501 atgtaacgtt ctgtgcattg gccgttcgtg tgtttcccag taaacacact gtcgccagtc
     4561 ccagcgtcgt aaacaaacga cccttgagca tgcaacctct cggattaagg aagcatacat
     4621 tttacggcta acaggcgtgt tggggcaggg gcaacttgca acagttgcac aaatctttta
     4681 ctgaacggcc gttcgcttga tgaatgggta gaagatgagg ccggcaaaga tcaccgcgaa
     4741 gatcgcgagc gtcggtatcc gggcgacagg atcagccagg gcgctcccca gcagatagag
     4801 aatcgcgaga acgaatacga cgggcgcgac cgggaaccag cgcgcgcgta ccgccggccg
     4861 gtagccggcc tttctcttcc ggagtgggaa gattgcggcg actccaagcg cgtagaacgg
     4921 gatgattgcg gtcacaaatg tgtctgctag ctgctcgaac gtccttaaca tcacaaagat
     4981 gatgccaagc gccgtcgcta acagtattgc agcgccgggt gtctggaatc gcggctgtac
     5041 cctgccgagc tggcggaaga gcagaccgtc ggttgccatc gcgaagagga tgcgagggcc
     5101 ggtgagcatc gagctggcaa gggtgccaag cgcggacagc atcacgacga tgccgacggc
     5161 ggcgacgccg ggctgcccca tgagacgctg ggcgacgtcc gccgcgacca gttgcgagtg
     5221 acgcatctca tcgatggaga gcaccgacag atacgcgatg ttcgcaagca gatagagcgc
     5281 tatcacggcg agcgtgccgt agatcaggac cttggggaga ttgcgctccg gatccttgac
     5341 ctcgccgccc acgaagctga catcggccca gccgtcgtat acccagagca ccgacgtgag
     5401 agcgagcgca aacggaacga agccgaagct tccgctcggc gcgacgggag tgaaatgacc
     5461 acccgtgtgc ggcaacgcgg cgagcgcgac gatctcgatg ccaagcagac cggcgcactt
     5521 gagaatcgtc agcgtattct ggacgagcgt accccatttc acgccgacgt agttgagaat
     5581 gcccatcacg ccgatcgata cggcggcgac gtagtgaacc cactgactgt acggcgcggt
     5641 gagcgggtcg tggccggtcg accggagcag atattccgca aacgtggtcg agatggcgcc
     5701 aagcgctgcg gcgcggatga tcacgagctc ggcccatcca aagagaaagg cggggatgcg
     5761 cccccaccct tccctgatat agacataaac gccgcccgtt tcgggatagg cgctcgcgat
     5821 ctcggcgagt gtgagcgcgc cgcacagtgc gacgagcccg ccaaaaaccc agagcgacag
     5881 catcgggaga ggccccggca gccgatcggc aataccggct ggcgagcgaa agatcccgga
     5941 tccaacagtg gatccgacga gaactgcgac ggcgctccag aggccgattc ggcgcggaag
     6001 ggcggaaggc atcaacaacg gtactgcaac gaacgtggga tggcgagtag ctttacactc
     6061 tgaaatggag ctacatcgag ccctgttctg ggcctgcctc gtcattaccg tcatcgccga
     6121 gctgctgatt ctgcggtcgg cgttttttcc accaacggac atggtaccgg ccgacaacat
     6181 gccgcggtcg cctcggatcg tcgagatgat ctggggcgtg ctgccggcgg tcgtgctggc
     6241 ggtggtgttc tggatggcgt ggagggccct gtgagcacgt cggagcctcg tcggagcgac
     6301 gggctggcac gagggcccgc ctcgacagac gggggtctgc tcctcctgcg acggctcgcg
     6361 tatctcgcta ccgggctggc gtttgcgcag atcgtctttg gcgcgattgt gcgcataacg
     6421 ggatccggga tggggtgcgg cgaccactgg cctacgtgtc agggttacct gtttccaccg
     6481 ctcgagcgtc cggatctgat cgtcgaggtc acgcaccgct acatcgcggc gacggtaact
     6541 gtcgcgatca tcgtgcttct cgtcactgcg ttcatgcgcc gagcgcaacg tggcgtcggc
     6601 gggccgggcg gagtgttgcg atcagcgatg cttgctacgg ggctcgtcct cgtagcggcc
     6661 gtattcggtg gaataactgt caagctctcg ctcaatcctt acataatcgt cacgcatctc
     6721 gcgatcgcga tgacgttgtt ggccgtgttg tcgatcgcgg cgcttcgcgc gggcggctgg
     6781 gggttcgacg ggacggaagt tgcgtcgccg cgaacgtatc gagctgcgcg agctgcggta
     6841 attctcgcgt tcatcgtgtt ggtgatgggc gcgctcacgg caaacgtgct gggcgccaac
     6901 gcgtcgtgcc agggattccc gtggtgcagc aagatcgcgg tgacgggcac gccgctgtac
     6961 atccaggtaa tacatcggat actcgcattt ctattgttct tccacgtgat aggagttgcc
     7021 gtggcggcgc agcgccggcg cgagtcgcgt caggtgcgca ttgcagcgtg gatcgcgctt
     7081 ggcgcgatcg ttctgcagat agcagtcgct gcgggaatgg tcgagatgca ccttccgccg
     7141 gtgtggcgct cactgcacca ggcgatgggg actctcgtgt ggttgtcggt cttcacgctt
     7201 gcggcactgg ctagatactc gctcgctgaa cgcagtgaag agagggcgac acttcaagcc
     7261 gcggcagcgg cggcgtgaac acgggtcacg gaatgaacgc tgacggtgca gtctccgtaa
     7321 ctcgcgagcg cgaacactcg ctcgcgtcgg atctcctggc gctcacaaag ccgcggataa
     7381 tctcgctgct tctcgtgac
//
LOCUS       DATIMD010000398         5075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_739547, whole genome shotgun sequence.
ACCESSION   DATIMD010000398 DATIMD010000000
VERSION     DATIMD010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5075
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_739547"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1545
                     /locus_tag="VLI40_08795"
     CDS             <1..1545
                     /locus_tag="VLI40_08795"
                     /inference="COORDINATES: protein motif:HMM:NF021445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol lysyltransferase
                     domain-containing protein"
                     /protein_id="HSU97315.1"
                     /translation="GALLLFSGAVPALAGRLRWLSMWIPLPVVELSHFMDNLAGVMLL
                     ILARGVERRLDVAYHLTIGMLVAGIILSLLRALDVEQALVLALMLATFIPSRKYFYRR
                     SSLIEERFSAPWIAAILLVTLGSIALGLLSYSNLDISIATFFHFARHAQAARFLRASA
                     GVLGTLIVFAVLRLMRTARKPVPRPTQADIRDAHAVVANYPHAAAQLAFLGDKSFLFN
                     EQRTGFIMFGVHGRSWVSLGDPISSPADATELIRSFIRLADQSGGWPVFYKVAPALLY
                     VYLDHGLNVVKLGEEARVSLPDFSLEGPTRRNLRRVWRKITDDGYRFEIVQPPDVPAI
                     LPELRAVSDEWIRQKQTREKSFSLGAFSEDYVRRYPVAIARKDGRIVAFSNAWVSAQK
                     EEIEADLMRYTADAPPGIMRFVLIEMMLWARNEGFTWFNLGMASLSGLTVHRGAPIWN
                     QLAVAIRGYGERFYNFQGIREFKEWFHPEWNPVFLVSPGGVARPVILANIASLISGDL
                     QGVLQK"
     gene            1548..3491
                     /locus_tag="VLI40_08800"
     CDS             1548..3491
                     /locus_tag="VLI40_08800"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HSU97316.1"
                     /translation="MRNTKLAITLLVVAAIARLVLAAFIPLLPDETYYWDWSRHLAAG
                     YFDHPPAIALLIRSGTAIFGQTALGVRFGAVLAGTVASIAVVVMSWRLGAEAPDADDS
                     DVANAKNVLADSGVRAALLMLVIPGALVGFVLATPDAPLLAAIALTLAALERAIASPA
                     KSAASLGWWCAAGVMLGVAFCSKFTSVLIPAGVFVALLSRRDLRTRLAGPGPYVATLL
                     ALTVLAPTLVWNSHNGWISFVFQLHHGFTQAHGSVLGREAGLIGGQLGIISPIIAVMA
                     ALAVARGLRRMADERRFMFAVIATTVAVFFVLSAIRRPVEPNWPVPALVAALPLLATM
                     RLGRAARAWLIAGSVIGAACTLVVAAQAAARIIPVSPRRDPISKAYGWSDLARAVQRT
                     VSASKGCTTTWIAADRYQDASELAFNMTGNPRVFSLNLGGRANQYNLWPSIYAAAGHT
                     DCAVIVVDEGAAGERVVRKVGADSAALVSHAVMMWRGIPVGRRAIWLVRGLPDVQPVE
                     VAISPAAAAALTSATTTFATHKAVLDSIVAVYRLAPGPDVVTATAATPIASKDRRASI
                     SARIDSLHGLLQRGGFRAVYRDARYHECTFIRSAEPDSTDLGYVYAPDGCKLAAGLGD
                     RVLRVEHAQGPWYSYASPEHRPY"
     gene            3588..>5075
                     /locus_tag="VLI40_08805"
     CDS             3588..>5075
                     /locus_tag="VLI40_08805"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043138 - 3'-5' DNA helicase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HSU97317.1"
                     /translation="MANKTAAAGKRPEARSLLSERFGHPNFRPGQWEPINALLSGRDT
                     LVVMPTGSGKSVIYQLPALLMPGLTLVVSPLIALMKDQHDKLDAIGVDSVSLHSHLSS
                     AENREARRQIADGEGEILYVTPERFKDREFFEQLLQRRISLFVIDEAHCVSQWGHDFR
                     PDYLTLGSIAQRVGRPPILALTATATQIVRDDIIRQLGMRDPYLTVTGFARPNLRIQV
                     VRAVNDNLKDRIVENLLRDTPGSGVIYAATVKEAARLHKQLSEKFEGELDIGLYHGKM
                     AATERRDTQDRFMNGQLKAIVATNAFGLGVDKQDLRFVIHYHFPGSIESYYQEAGRAG
                     RDGDPATCTLLYRVEDRRIQSYFLGGKYPEVSEAARVAIALEKYPAEALVSLADLVDV
                     TEVATRKVKIVLALLKKHGLAREHRGDNWQRLRDNLTSIDLSADLTDYEERRARDQEQ
                     LNTIVQFCQTTGCRTRFILEHFGEAVEPDWTCGNCDACDQLTEWER"
BASE COUNT          928 a         1613 c         1520 g         1014 t
ORIGIN      
        1 ggcgcgctcc tgttgttctc cggcgccgtg ccggcactcg ccggacgact gagatggttg
       61 agcatgtgga ttccgctccc ggtcgtcgag ctgtcccact tcatggacaa cctcgcgggc
      121 gtgatgctgc tcattctcgc gcgcggggtc gagcgacggc tggacgttgc ataccacctc
      181 accatcggta tgctcgtcgc gggaatcata ctgtcgctgc tgcgcgcact cgacgtagag
      241 caggcactgg tgctcgcgct gatgctggcc accttcatac caagccgcaa gtatttctat
      301 cgtcgcagct cgctgatcga agagcgtttc tcggcgccgt ggatcgcggc aattctgctg
      361 gtgacgctcg gctcgattgc gctcggcctc ctgtcgtact ccaatcttga catctcgatt
      421 gcgaccttct tccatttcgc gagacatgcg caagctgctc gctttctgcg cgcgagcgct
      481 ggcgttctcg gaacgctgat cgtattcgcg gtgctgcgcc tgatgcgcac cgcacgcaag
      541 ccggttcccc gtccaaccca ggccgacata cgtgacgcgc acgcggtcgt ggcaaactat
      601 ccgcatgctg cggcgcagct cgcgtttctg ggcgacaagt cgttcctgtt caatgagcag
      661 cgcacgggat tcatcatgtt cggcgtgcac ggacgcagct gggtttcact tggcgacccg
      721 atctcctcgc ccgccgacgc gacggagctc atccgctctt tcatccgtct cgcagatcag
      781 agcggcggct ggcctgtttt ttacaaggtc gcgccggcgc tgttatacgt gtatctcgac
      841 cacggtctca atgttgtaaa gcttggagaa gaggcacgcg tctcgcttcc ggatttttca
      901 ctcgaaggac cgacgcggag aaatctgcgg cgtgtctggc gcaagatcac ggacgacgga
      961 tacaggttcg agatcgttca accaccggac gtaccggcga ttcttccgga gttgcgcgcc
     1021 gtgtccgatg agtggatcag gcagaagcaa acgcgtgaaa agtcattttc actcggggcc
     1081 ttcagtgaag attacgtgcg gcgctacccc gttgccatcg cgcgcaagga cggacgcatc
     1141 gtcgctttct caaatgcatg ggtctccgcc cagaaggagg agatcgaagc cgacctcatg
     1201 cgctatactg ccgatgcgcc gcccggcatc atgcgcttcg ttctgatcga gatgatgctg
     1261 tgggcgcgga acgagggatt cacatggttc aatctcggga tggcatcact tagcggactc
     1321 accgttcacc ggggcgcgcc gatctggaat cagctcgcag tcgccatacg cggctacgga
     1381 gagcgattct acaacttcca gggaatccgg gaattcaagg agtggtttca tccagagtgg
     1441 aacccggtct ttctcgtaag ccccggaggt gtcgcgcggc cggtcattct cgccaatatt
     1501 gcatcgctca tctcgggcga tctgcagggc gttcttcaga agtaacgatg cgcaatacaa
     1561 agctcgcaat cactctgctc gtcgtcgcgg cgatcgcacg cctcgtgctc gccgcgttca
     1621 tccccctgct ccccgacgaa acgtattact gggactggag ccggcatctt gccgccggat
     1681 atttcgatca tccaccagcc attgcgcttc tgatccgctc cggcaccgca atctttggac
     1741 agacggcgct cggtgttcgc ttcggcgccg ttctcgccgg cacggtcgcg tcgatcgccg
     1801 tcgtcgtgat gtcatggcgg ctgggtgcag aggcgcccga tgccgatgac agcgacgttg
     1861 caaacgcgaa gaacgtgctt gctgactccg gcgttcgcgc tgcgctgttg atgctcgtga
     1921 taccgggtgc gctcgtcgga ttcgtgctcg caacgcccga cgcgcccctg ctcgcggcaa
     1981 ttgcgcttac gctcgcggcg ctcgaacgcg ccatcgcatc acctgcgaaa tccgctgcgt
     2041 cgctcggctg gtggtgcgct gccggcgtga tgctcggcgt cgccttctgc tccaaattca
     2101 catcggtact gattccagcg ggcgtgttcg tcgcgcttct gtcacgccgc gacctgcgca
     2161 cgcgactggc cggtcctggc ccgtacgtcg caacgttact cgcgctaacc gtactcgcac
     2221 cgacgctggt ctggaattct cacaacggct ggatctcctt cgtgttccag ctgcatcacg
     2281 gatttacgca agcgcatggc tcggtgctcg gccgagaagc gggattgatt ggaggacagc
     2341 tcggcatcat ctcgccgatc atagctgtga tggcggcact cgccgttgcg cgcggtctgc
     2401 gtcgaatggc ggacgagcgc cggttcatgt tcgcggtcat tgcaacaacc gtggccgtgt
     2461 tcttcgtgct gagcgcaata cggcggccag tcgagcccaa ctggcccgtg ccggctcttg
     2521 tcgccgcact cccactgctg gcaacaatgc ggctcggccg cgccgcacgc gcatggctga
     2581 tcgccggttc agtgatcgga gccgcgtgca ctctggtcgt cgccgcacag gccgccgccc
     2641 gcatcattcc tgtctcgccg cgccgcgatc cgatatcgaa ggcgtatggc tggtccgatc
     2701 tcgcacgcgc tgtgcaacgg acggtgtcgg caagcaaggg ttgcactaca acatggatcg
     2761 ccgccgacag ataccaggat gcttcggagc tcgctttcaa tatgacgggt aatccgcgcg
     2821 tcttttccct caatctcggt ggcagggcca accagtacaa tctctggccc agcatctatg
     2881 cggcggcggg ccacacggat tgtgcagtca ttgtcgtgga cgagggcgcc gcaggcgaac
     2941 gtgtcgtacg aaaagtcggc gccgacagcg cggcgctcgt cagccacgcc gtaatgatgt
     3001 ggcgcggaat tcccgtcgga cggcgcgcta tctggctcgt tcgtgggctc cccgacgtgc
     3061 agccggtcga agtcgcgatc agccccgcag ccgccgccgc actcaccagc gcgactacga
     3121 cgttcgccac gcacaaggct gtactggact ccatagttgc cgtttaccgc cttgcgcccg
     3181 gaccggacgt ggtgaccgcg acggcggcaa cgccgatagc gagcaaggac cggcgcgctt
     3241 cgatttctgc gcgaatcgac tcgcttcacg gactgctgca gcgcggcggc ttcagagcgg
     3301 tgtatcgaga cgcacgctac catgagtgca cctttatcag atcggccgag cctgacagca
     3361 ccgacctcgg ctatgtgtat gcgccggatg gatgcaagct cgcagctggc cttggcgacc
     3421 gggtgctgcg agtcgagcat gcccaggggc cctggtactc gtatgcctca ccggagcacc
     3481 ggccctactg aaatggccgc caacgggcga ccgaatgttc cgtattgact gagtgatccc
     3541 gcaatggccg atccagcgga atagttcctg ccttgcatgc ggggcgcatg gcaaacaaaa
     3601 ctgccgcggc cggcaaacgg cccgaagccc ggtccctgct atcagagaga ttcggtcatc
     3661 cgaatttcag acccggtcag tgggaaccaa tcaacgcgct cctgtccgga cgcgacactc
     3721 tcgtcgtgat gccaacgggc agtggcaagt cggtgatata ccaacttccc gccctgttga
     3781 tgcccgggct cacacttgtc gtcagtccgc tcatcgcact gatgaaggac cagcatgaca
     3841 agctagatgc gataggtgtc gactcggtgt cgctacactc gcatctttcg tcggccgaaa
     3901 atcgagaagc gcgccgtcag atcgcagacg gggaaggaga gatcctctac gttacgcccg
     3961 agcgcttcaa ggaccgggaa ttcttcgagc agctcctgca gcgcaggata tcgctcttcg
     4021 tcatcgacga agcgcactgt gtttcccagt ggggacatga tttccgcccc gattacctga
     4081 cactcggctc gatagcgcaa cgcgtcggac gcccaccaat tctggccctc actgctaccg
     4141 ctacgcaaat cgttcgcgac gacatcatcc gccagttggg gatgcgcgat ccgtatctga
     4201 ccgtcaccgg tttcgcgcgt ccgaatcttc gcattcaggt ggtgcgagcc gtcaacgaca
     4261 atctcaagga ccgcatcgtc gagaaccttc tgcgtgacac gcccgggtct ggcgtcatat
     4321 acgccgcaac ggtcaaggaa gcggcacgcc tgcacaagca gctctccgag aaattcgagg
     4381 gagagctgga catcgggctg tatcacggca agatggcggc gacggagcgc cgtgatacgc
     4441 aggaccgctt catgaacggt caactcaagg cgatagtggc gaccaatgcc ttcggactcg
     4501 gcgtcgacaa gcaggatctg cgcttcgtga ttcactatca cttccccggc tcgatcgaat
     4561 cgtactacca ggaggcgggt cgagccggtc gcgacggaga tcctgcgaca tgcaccctcc
     4621 tctatcgtgt cgaggacaga cgcatccaat cgtatttcct cggcggcaag tatcccgagg
     4681 tctccgaagc agcgcgcgtg gcaatagcgc tcgagaagta tcctgccgaa gcactggtct
     4741 cgctcgccga tctcgtggac gtgacagaag ttgccacgcg caaggtgaaa atcgtcctcg
     4801 cgctactcaa gaaacacggg ctggcgcgcg agcatcgagg ggacaactgg caacgtcttc
     4861 gcgacaatct cacgtcgatc gacctgagcg cagacctcac tgattatgag gagcggcggg
     4921 ctcgcgatca ggagcagctc aacaccatcg tccagttctg tcaaaccacc ggctgcagga
     4981 cacgattcat cctcgagcac ttcggggaag ctgtagagcc ggactggacc tgcggtaact
     5041 gcgacgcatg cgaccagctc acggagtggg aacgc
//
LOCUS       DATIMD010000399         7025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5361735, whole genome shotgun sequence.
ACCESSION   DATIMD010000399 DATIMD010000000
VERSION     DATIMD010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7025
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5361735"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..471
                     /locus_tag="VLI40_08810"
     CDS             <1..471
                     /locus_tag="VLI40_08810"
                     /inference="COORDINATES: protein motif:HMM:NF015962.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0050532 - 2-phosphosulfolactate
                     phosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phosphosulfolactate phosphatase"
                     /protein_id="HSU97318.1"
                     /translation="AIGGRTVLLTTTNGTRTLIAAQGAADVVVASYVNLSAVTAMLRS
                     ALRGGTDVVIACSGQDGHYALEDAACAGRFVRTVTKRLSGVAMNDAAHSCALLARSYG
                     DEIGSVFLDSAHGRALSEAGFHDDLAHCAAVDAYPIVPVFAERQITRLGSDRER"
     gene            473..2782
                     /locus_tag="VLI40_08815"
     CDS             473..2782
                     /locus_tag="VLI40_08815"
                     /inference="COORDINATES: protein motif:HMM:NF013727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015616 - DNA translocase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HSU97319.1"
                     /translation="MADAALKREVQAIALLLLAVFLAGALMLHGWSEMRGIPAAAGSF
                     GSVGALAARSLIVVFGWVGSSLLPVALAVHALRVFGRMSGGRDRSWLIFLLGMVIVLP
                     FGVALAMGATRDDNVFSGVIGGLLAFYTTQLTGPVGAWLLFLLALSVLAAATLSWNPI
                     RMLVGRELKPVVAGAEQAAALDDTYNPPRVRKQKLLAQQLEPEPEEMPVIDEGLSAPF
                     ELRKDRSRRRRGKERDASSAEDRVAAEIEATDVAHERFDDEDLPTPDLLTAPAPRNLD
                     ANRRDLDAAGQRLMDALRTFRVDGELVGRTTGPAVTQFEIEPAPGIKVRQIANLANDL
                     ALAMRAQSIRVVAPIPGRGAVGVEVPNPVPEMVAFRELLESPDFQTARAALPIALGKD
                     LAGKPVIADLAKMPHLLIAGATGSGKSVCVNTLITSLLYRHTPRTLRFLMVDPKMVEL
                     SVYNMIPHLRHKVVTDNRDAAAVLKWAVYEMQSRYELLAANNARNIQDFNRKVTEKAP
                     LKKPKTPNVAFEDLEYKDDVLPYIVVIIDELADLMMTVQGEVETPLAMLAQKARAIGI
                     HLILATQRPSVNVITGLIKANFPSRIAFRVASQIDSRTILDGMGAESLLGNGDMLFIP
                     PGKSEPARLQGAYISSEDTEQLMGWFEARKKARASGFAAAEDMPSESDILEAVRKLDA
                     ERAGAGEDGDNGDDGDRDKLFRDAAEIVIQNQSGSTSLLQRRLKIGYGRAARIMDQLQ
                     LAGVLGPSDGPRGRDVLVGLEDLERIAPR"
     gene            complement(2820..3029)
                     /locus_tag="VLI40_08820"
     CDS             complement(2820..3029)
                     /locus_tag="VLI40_08820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97320.1"
                     /translation="MASIVVGDHVRIASVPGKPLGRITKTFEKMADEKGGGSGDAYVY
                     NVWVEAQQKEYHGLRASDLIKPRGD"
     gene            3194..3559
                     /locus_tag="VLI40_08825"
     CDS             3194..3559
                     /locus_tag="VLI40_08825"
                     /inference="COORDINATES: protein motif:HMM:NF014119.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HSU97321.1"
                     /translation="MRGEAVAAKWLALKGWEILDRRFQNGHRDLDLVVCRVEEATQCR
                     LVAFVEVRTRLSTDFGTPAETVGWKKRRELARSARVWIASNRCSGDHFRFDVVGVIMG
                     RERVQIQYIPDAFWVDSRR"
     gene            3746..4798
                     /gene="recA"
                     /locus_tag="VLI40_08830"
     CDS             3746..4798
                     /gene="recA"
                     /locus_tag="VLI40_08830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HSU97322.1"
                     /translation="MGASTMQDDKKKALNLAVAQIEKNCGKGSIMRMGTSTAGVRVDS
                     ISTGAINLDAAIGIGGIPRGRVTEIYGPESSGKTTLCLHVVANAQKNGGVAAYIDAEH
                     ALDTEYASKLGVDVENLLVSQPDTGEQALEICEILVRSGAVDVVVIDSVAALVPKAEI
                     EGDMGDSHVGLQARLMSQALRKLTGAIARSNTSVIFINQLREKIGVMFGNPETTTGGK
                     ALKFYASVRLDIRRVGPVKDKEDVVGSHVRVKVVKNKVAPPFKQAEFDIMYAEGISHS
                     SLVLDIAAENGIIDKSGAWYSYGSQRIGQGRENAKLYLKDNAALMSEVEVKVKALLGI
                     TATTAVAAEPEAVEEV"
     gene            4930..5394
                     /locus_tag="VLI40_08835"
     CDS             4930..5394
                     /locus_tag="VLI40_08835"
                     /inference="COORDINATES: protein motif:HMM:NF014668.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein RecX"
                     /protein_id="HSU97323.1"
                     /translation="MAQTPYNRALDLLSARPYTVRQLRRKLIQKEVPADEADAVIERL
                     VGAGLLDDERYALAYARSKLVGQGSSARRISQDLARKGVSTELSKQAIEQVVIDEEID
                     TRAVIERVARKKLASMGDLEPVVLRRRLFAFLARRGYEMDEIREVVAAVGKT"
     gene            5446..>7025
                     /gene="alaS"
                     /locus_tag="VLI40_08840"
     CDS             5446..>7025
                     /gene="alaS"
                     /locus_tag="VLI40_08840"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF013570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HSU97324.1"
                     /translation="MQSSEIRTRFLEFFERQGHRILPSSSLVPADDPTLLFTNAGMVQ
                     FKRVFLGNEEPPTPTRRATTSQKCVRAGGKHNDLEQVGHTARHHTFFEMLGNFSFGDY
                     FKRDAIGFAWAFVTGELGLAPENLRVTVFREDDEARALWKEIAGLSDDRIFGLGEKDN
                     FWQMADTGPCGPCTEIYVDLAKVARDWKAPAGSSGTWTNPDVVDFDTETFVEAAEAGR
                     FVEIWNLVFMQFDRQPDGTLAPLPRPSVDTGAGLERIAAVMQGVANNFDTDLFTPLIA
                     SVESQLGRVDTSDAADRVAAMRVIADHARSIAFLLADGVYPSNDGRGYVLRRILRRGV
                     RYAWLLGRREPTLAPVVERVIDMMRDVYPELQQRRQHILDTTRAEEERFLATINGGMQ
                     RFDELAPAKTTQERTIAGEDAFKLYDTYGFPIDLTELMARERDYTVDIPGFERALAAQ
                     RTQSQEERRSRKLTVAADDLGDAAAWSDVGGSLGDALASARFVGYERRDSDTEAVAVR
                     PLSDGRVAVLLRESPFYA"
BASE COUNT         1281 a         2079 c         2328 g         1337 t
ORIGIN      
        1 gcgatcggcg ggcgaacggt gctgctcacc acgaccaatg gtacgcgtac gctgattgcc
       61 gcgcagggcg cggcggacgt cgtcgtcgcg tcctacgtga atctttctgc ggtcaccgca
      121 atgctgcgaa gcgcactgcg cggcggtacc gacgtcgtga tagcgtgctc cggacaggac
      181 ggtcattacg cgctcgagga cgcggcctgc gcggggcgat tcgttcgcac agtgacgaag
      241 cgcctttcag gtgtcgcgat gaacgacgcg gcgcattcgt gcgcacttct cgcgcgcagc
      301 tacggtgacg agatcggctc cgtcttcctc gactcggcgc acggacgcgc tctgtcggag
      361 gccggattcc acgatgacct tgcgcactgc gcggccgtcg acgcatatcc cattgtgcca
      421 gtgtttgcgg aacgtcagat aaccaggctc ggcagcgacc gggagcgatg aagtggccga
      481 cgcggcgctg aagcgggagg tgcaggcgat agccctgctg ctgctcgcgg tctttcttgc
      541 aggcgcgctc atgctgcacg gctggagcga gatgcgcgga atccccgcgg cggccgggag
      601 cttcggctcc gtcggtgcgc ttgcggcacg atcgctcatc gtcgtgttcg gctgggtcgg
      661 ctcgtcgctc cttcccgttg ctctcgcagt gcacgcgctg cgcgtgttcg gtcgcatgag
      721 cggcggacgc gatcgctcgt ggctcatctt cctgctcgga atggtgatcg tgctgccatt
      781 cggagtcgcg cttgcgatgg gcgccacgcg cgacgacaac gtcttctccg gcgtaatcgg
      841 cggcctgctg gcgttttata ccacgcagct caccggaccg gttggtgcgt ggctgctctt
      901 tttgcttgca ctgagcgtgc tcgcggccgc gacattgtcc tggaatccca tccgcatgct
      961 ggtcgggcgc gagctcaagc cggtcgtcgc gggagcggag caggctgccg cgctcgatga
     1021 cacgtacaat ccgccccgcg tgcgcaagca gaaactgctc gcgcaacagc tggagcccga
     1081 accggaagag atgcctgtga tcgacgaggg actgtcggcg ccgttcgagc tgcgcaagga
     1141 ccggagtcgt cgccgtcgcg gtaaggagcg cgacgcctcg tcagccgaag atcgcgtcgc
     1201 cgccgagatc gaagcaaccg acgtcgcgca tgagcgattc gacgacgagg atcttccgac
     1261 accggatctg ctcactgcac ccgcgccgcg caacctggat gcaaatcgtc gcgacctcga
     1321 cgccgcgggt cagcgactga tggatgcgct gcgcacgttt cgcgtcgacg gcgagctcgt
     1381 gggccgcact acagggccgg ccgtgacaca gttcgagatc gagccggcac ccggcatcaa
     1441 ggtgcgccag atcgcgaacc tcgccaacga tctcgcgctc gcgatgcgcg cgcagagcat
     1501 tcgtgtcgtc gcaccgattc cagggcgtgg cgccgttggt gtcgaagtcc ccaacccggt
     1561 tccggagatg gtcgcgttcc gcgagctgct cgagtcgccg gattttcaga ccgcgcgcgc
     1621 agcacttccg atcgccctgg ggaaggacct cgccggcaag cccgtgatcg ccgatctcgc
     1681 caagatgccg catctcctca ttgccggcgc gacgggctct ggcaagtcgg tttgtgtcaa
     1741 cacgctcatc accagcctgt tgtatcgcca cacgccgcgc acgcttcgct tcctgatggt
     1801 ggatccgaag atggtggagc tctccgtgta caacatgatt ccgcatctcc ggcacaaggt
     1861 cgtcaccgat aaccgcgacg ccgccgccgt actcaagtgg gccgtgtacg agatgcagtc
     1921 gcgctacgag ctgctcgcag ccaacaacgc gcgcaacatt caggacttca atcgcaaggt
     1981 cacggaaaag gctccgctca agaaacccaa gacgcccaac gtcgcgttcg aggatctcga
     2041 gtacaaggac gacgtcctcc cttacatcgt cgtcatcatc gacgagctcg cagatcttat
     2101 gatgaccgtt cagggcgagg tggagactcc gctcgcgatg cttgcgcaga aggctcgcgc
     2161 gatcggaatc cacctcatcc tcgcgacgca acgtccgagc gtcaatgtca tcacgggtct
     2221 catcaaggcg aactttccga gccgcatcgc gtttcgcgta gctagccaga tcgacagccg
     2281 taccattctc gacggaatgg gcgcggagtc attgctcggc aacggggaca tgctgttcat
     2341 cccgccaggc aagtcggagc cggcgcgcct tcagggcgcg tacatctcga gcgaagatac
     2401 cgagcagctg atgggctggt tcgaggcgag aaagaaggcg cgtgcgtcag gcttcgctgc
     2461 ggccgaagac atgccgagcg agagcgacat tctcgaggcg gttcggaagc tggacgccga
     2521 gcgcgccggc gctggcgagg acggcgacaa tggtgacgac ggtgatcgcg acaagctgtt
     2581 ccgcgatgcg gcggagatcg tgatccagaa ccagagcggc tcgacgtcgc tgcttcagcg
     2641 gcggctcaag atcggctatg gccgcgcggc gcgcatcatg gaccagctgc agctcgccgg
     2701 cgtgctcggc ccctccgacg ggccgcgcgg ccgcgacgtg ctggtcggtc tcgaagatct
     2761 ggagcggatc gcgccgcggt agcttgcggc gcctggtcgc cgcagtgcct ggcggcgctc
     2821 tagtcgccgc gcggcttgat caggtcgctt gcgcgcagtc cgtggtactc cttctgctgc
     2881 gcctcgaccc agacgttgta cacgtatgcg tcgccggatc caccgccctt ttcgtctgcc
     2941 atcttctcga aggtcttcgt gattctgccc agaggctttc cggggacgct cgcaatgcga
     3001 acgtggtccc caactacgat acttgccatc ccgaaaaact agcgacggtg ccggttgcgc
     3061 gcccgtgttg tcgcgtcgct gatccgaaat atttccatgc actggtttga ttctgcgtgc
     3121 gtgcccgagc tacatcgctt ttcgaagtcc gacgctaaac tcgtccatgc tgactgatcg
     3181 acagcgattg gggatgagag gcgaggcagt tgccgcgaag tggctcgcgc tgaaagggtg
     3241 ggagattctg gatcggcggt tccagaatgg gcatcgggat ctcgacctcg tcgtctgcag
     3301 ggtggaggag gcgacccagt gccggctcgt ggcctttgtg gaggtgagga cgcggctctc
     3361 gacggatttc gggacgccag ccgaaacggt gggctggaaa aagaggcgag agctggcgcg
     3421 gtcggcgcgc gtctggatcg cctcgaacag atgttcggga gatcacttca ggttcgacgt
     3481 ggtcggggtg atcatgggca gggagcgggt tcagattcag tacattccgg acgccttctg
     3541 ggtggattcg cgccgttaga ggccgctcgt cgggtggtcg tccagtcgtg atcttcggtt
     3601 gattttcggt ctgatatttc gtattttgtt cggggctcct gcagtgcgaa agaatctggg
     3661 gaatcccggt ggttttgccc ggaaacacga atccggattg ggcagtccgg agttatctta
     3721 catcagcaaa aaggaaaggg gaccaatggg tgcttccacc atgcaggacg acaagaagaa
     3781 ggcgttgaac ctcgcggtgg cgcagatcga gaagaactgc ggcaagggtt caatcatgcg
     3841 gatgggcacg agcaccgctg gtgtgcgcgt agactcgatc tcgacaggcg ccatcaatct
     3901 cgatgcggcg attggaatcg gtggtattcc aaggggtcgc gtgaccgaga tctacggtcc
     3961 ggaatcaagt ggtaagacga cgctgtgttt gcacgtcgtt gcgaatgcgc agaagaacgg
     4021 cggcgttgca gcgtacatcg acgcggagca cgcgctcgat acggaatacg cgtccaagct
     4081 cggtgtggat gtggagaacc tcctcgtatc gcaacctgac acgggcgagc aggcgctcga
     4141 gatctgtgag atactcgtgc gctctggcgc ggtggacgtt gtggtgatcg actcggttgc
     4201 ggcgctggtg ccgaaggccg agatcgaggg cgacatggga gattcgcacg tcgggttgca
     4261 ggcgcgattg atgagtcagg cgcttcgcaa gttgactggc gcgatcgcgc ggtcgaacac
     4321 gtcggtgatc ttcatcaatc agctgcgtga gaagatcggc gtgatgttcg gcaatccgga
     4381 gacgacgacc ggtggaaaag cgctcaagtt ctacgcctcg gttcgtctcg acattcgtcg
     4441 tgtcggaccg gtgaaggaca aggaggacgt ggtcggatcg cacgtccgcg tgaaggtcgt
     4501 caagaacaag gttgccccgc cattcaagca ggcggagttc gacatcatgt acgcggaagg
     4561 gatcagtcac tcgtcgctgg tgctcgatat tgccgcggaa aacgggataa tcgacaagtc
     4621 gggagcgtgg tacagttatg gcagtcagag gatcgggcag ggtcgtgaaa acgccaagct
     4681 ctacctcaag gacaacgctg ccttgatgtc agaagtagaa gtgaaggtga aggctctgct
     4741 tggaattacg gctactacag cggttgcagc cgagcctgag gcggtcgagg aggtctaacc
     4801 ccctccgtcg tccgtaataa ataaacggat gtgtcgccga gttgatgcgg tttgtaggag
     4861 atggggcccg gactccccgc ctaatgcgaa tcgtatcggc tcggcgactg tcgtttccag
     4921 gtaacacctg tggcacagac gccctataac cgcgccctgg acctgctctc cgcgcgaccc
     4981 tacaccgtgc gccagttgcg tcgcaagctc atacagaagg aagtgccggc cgatgaggcg
     5041 gatgccgtca tcgagcgctt ggttggtgcc ggcctgttgg acgatgagcg gtacgcgctt
     5101 gcctacgcgc gatccaagct cgtggggcag ggctcgtcag cacgcaggat ctcgcaggat
     5161 ctcgcccgca agggcgtgag caccgagctg agcaagcagg ccatcgagca ggtcgtgatc
     5221 gatgaggaga tcgatacgcg cgccgtcatc gagcgggtcg cgcgcaagaa actcgcatcg
     5281 atgggcgatc tcgagcctgt tgtattgcgg cgccgattgt tcgcattcct ggcgcgacgc
     5341 ggatatgaaa tggacgagat ccgcgaagtc gtcgcagccg tggggaagac gtagggcgag
     5401 attggcgaga gtgtcggact cagtccgtct atatttcaag gctatatgca atcgtccgag
     5461 atccgcaccc gtttccttga atttttcgag cgccagggcc acaggattct tcccagctcg
     5521 tcgctcgttc cagctgacga tcccaccctg ctgtttacaa atgcaggaat ggttcagttc
     5581 aagcgcgttt tcctcggcaa cgaggagcca ccgacgccga cacgcagggc gaccacatcg
     5641 cagaagtgcg tacgtgccgg tggcaagcac aacgatctgg agcaggtcgg tcacaccgcg
     5701 cggcatcaca ccttcttcga gatgctgggc aacttctcgt tcggtgatta cttcaagcgc
     5761 gacgcgatcg gcttcgcgtg ggcattcgtt accggcgagc tcggcctcgc gcccgaaaat
     5821 cttcgtgtca ctgtgtttcg cgaggatgac gaggcgcgcg ctctctggaa ggagatcgcg
     5881 gggctttccg acgatcgcat tttcgggctc ggcgagaagg acaacttctg gcagatggcc
     5941 gacactggcc cgtgcggccc gtgcacggag atttacgtgg atctcgcgaa ggttgctcgc
     6001 gactggaaag ctccggccgg ctcgagtggg acctggacca atcccgacgt cgtcgatttc
     6061 gacaccgaga cgttcgtcga ggcggcggag gcgggacgat tcgtcgagat ctggaatctc
     6121 gtcttcatgc aattcgatcg gcagccggat ggcacgctcg caccgctgcc gcggccgtcg
     6181 gtggacaccg gggcagggct cgagcgcata gcggcggtga tgcagggcgt cgcgaataac
     6241 ttcgacaccg atctgttcac accgctcatt gcatccgtgg aatcgcagct tggccgcgtc
     6301 gatacctccg acgctgctga ccgtgtagcc gcgatgcgtg tcatcgcgga ccatgcgcgc
     6361 tcgatcgcgt tcctgctggc cgacggcgtg tatccgtcca atgacgggcg cggctacgta
     6421 cttcgccgaa tattgcgccg cggtgtgcgc tatgcctggc tgctcggccg ccgcgagccg
     6481 acgctcgcgc cggtggtgga gcgtgtcatc gacatgatgc gcgacgtgta tccggagctg
     6541 cagcagcggc gccagcacat actcgatacg acgcgagcag aagaggaacg ctttctcgcg
     6601 accatcaatg gcggaatgca gcgcttcgat gagcttgcgc cggcaaagac cacgcaggaa
     6661 cgcacgatcg ccggagagga tgcgttcaag ctgtacgaca cgtatggctt cccgatcgat
     6721 ctcacggagc tcatggcgcg agagcgcgat tacacggtcg acatacccgg attcgagcgt
     6781 gcgctcgcgg cacagcgcac gcagtcgcag gaagaacgtc gctcgcgcaa gctcaccgtt
     6841 gcggccgacg atcttggtga cgccgctgcg tggtcggatg taggcggctc gcttggcgat
     6901 gcgctggcaa gcgcgcgatt cgtaggctac gagcggcgcg actccgatac ggaggcggtg
     6961 gcggttcgac cgctgagcga cggacgtgta gctgtattgt tgcgcgaatc gccattttac
     7021 gccga
//
LOCUS       DATIMD010000400         3321 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3049665, whole genome shotgun sequence.
ACCESSION   DATIMD010000400 DATIMD010000000
VERSION     DATIMD010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3321
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3049665"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..1730)
                     /gene="secD"
                     /locus_tag="VLI40_08845"
     CDS             complement(75..1730)
                     /gene="secD"
                     /locus_tag="VLI40_08845"
                     /inference="COORDINATES: protein motif:HMM:TIGR01129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HSU97325.1"
                     /translation="MSLKYRILLIIALIAASAWALFPRTVTERVKRNGVYVVDTVQRV
                     PLKRGLDLQGGMHLALEIDDSKQKVADKGDAIDRALKVVRTRIDQFGVSEPLVQKAGA
                     DRIIVELPGIDDPQRAMDVVQKSAFLQFEITDKTGALEKALPRLDAAVKSLGSSAALK
                     GVAAPAATQTDSAKNALQGLFSKDTTKKTPGDTTKKDTAATTGGAFSKLIQQGQMPGE
                     YYVAQTDVPTLQRYLSLPSVQAAVPPGKVIRWSSDTTSLGSRTYRALYLLDARPIITG
                     DYLTDAKPTQSPTEGTVVQFTLNNEGGRRFRNETSKHIGDYMAIVLDSLVMGRPPVIQ
                     GAIGTQGQITLGGRDLQAAQDLALVLRAGSLPVPLKIDEVRNIGPSLGADSIHASIQA
                     GTIALALVVVIMIGYYRFSGLLAVFGLAIYTLCTLAALAGFDATLTLPGLAGFVLSIG
                     MAVDANVLIFERIREELDHGKSTRLAIDEGFRHALPAIIDSNVSAALTAAVLYQFGTG
                     PVRGFAVTLLAGIAASMVTAIFVVRTFYIIWLTRNTDQKALSI"
     gene            complement(1743..2711)
                     /locus_tag="VLI40_08850"
     CDS             complement(1743..2711)
                     /locus_tag="VLI40_08850"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: protein motif:HMM:NF004160.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HSU97326.1"
                     /translation="MSASRIVRDGAHLPPEVKGAAVTVGTFDGVHLGHLDVISRLVAV
                     AASEGLHSVAITFEPHPLDVVNPAAAPPLLTVGEEKLDALARTGLDHVVVLEFTHELA
                     SRSATEFVDQVLRDNFRMKHLLIGHDHGFGRERAGNAAVLQSLGASRGFSVDVVDPVA
                     AEDGRWISSTAIRRAVAGGDLPRAAELLGRPYSIGGTVVPGAARGRSLGFPTLNLSQP
                     SPRKLLPPDGVYAVRVATPHGTFGGMMNLGPRPTFGEHERSIEAYLFDASGDFYGQQV
                     RIDVLKRLRDTRTFPTPEALVQQIKLDESDARSALTVASPQGNLKG"
     gene            complement(2708..>3321)
                     /gene="truB"
                     /locus_tag="VLI40_08855"
     CDS             complement(2708..>3321)
                     /gene="truB"
                     /locus_tag="VLI40_08855"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HSU97327.1"
                     /translation="ARRVYGERSIGHLGTLDPFATGLLVLLLGRATRLATFIDNEPKV
                     YDATIRFGEETDTGDPTGDVIPTAPRPSRDAVLAAIPSLTGVIPQVPPEFSAKKVQGA
                     PAYRAARAGASVVLAPSPVTVHEWQIASHTDDELNVSIICGGGTYVRALARDLGRACD
                     SAAHLTSLRRTRSGEFDVMDAATIDDLRATPSPRVRKLRVIAE"
BASE COUNT          636 a         1003 c         1075 g          607 t
ORIGIN      
        1 gcgaccgtga ggccgacggc gacgcgccac cagcgaatga aatcgtaatg agtgttgtga
       61 aagattcgca gcatttatat gctcagtgcc ttctggtcgg tgttgcgggt gagccagatg
      121 atgtagaaag tccgcaccac gaagatcgcg gtcaccatgg aggcggcgat accagcgagc
      181 agtgtgacag cgaagccgcg aacaggtccg gttccgaatt gatagagaac ggcggcggtg
      241 agtgccgctg aaacgttgga gtcgatgatg gccggaagtg cgtgccggaa tccctcatcg
      301 atagccagac gtgtcgattt gccgtggtcg agctcctcac ggatacgctc gaatatcagc
      361 acgttggcgt cgaccgccat accgatggac agaacgaagc ctgcaagccc cggcagggtc
      421 agagttgcat cgaagcctgc aagtgccgcg agtgtgcaga gggtgtaaat cgcgaggccg
      481 aacactgcga gcaggcccga gaagcggtag taaccgatca tgatcacgac aacgagcgca
      541 agcgcgatgg tgccggcctg aatgctcgca tgaatcgaat cagcgccgag gctcgggccg
      601 atgttgcgca cttcgtcgat cttgagcgga acggggagcg atccggcacg cagaacgagc
      661 gccagatcct gtgcagcctg cagatcgcga ccgccaagtg tgatctggcc ctgagtacca
      721 atggcgccct ggatcaccgg cggacgtccc atcacgagac tgtccagcac gatcgccatg
      781 taatcgccga tgtgcttgga cgtctcgttg cgaaagcggc ggccgccttc attgttcagc
      841 gtgaactgga cgacggtgcc ttcagtcggt gactgagtgg gctttgcgtc tgtcagataa
      901 tcgccggtga tgatcggccg cgcgtcgagc agatacagtg cgcgatacgt acgcgagccc
      961 agtgacgtgg tatcgctgga ccagcgaatg accttgccag gtggcaccgc tgcctgcacc
     1021 gacggtagcg acaggtatcg ctgaagcgtc ggaacgtcgg tctgcgcgac gtaatattcg
     1081 ccgggcatct ggccttgctg gatcaacttg gagaacgcgc cgcctgttgt cgcagctgtg
     1141 tccttcttcg tggtatcacc gggcgtcttc ttcgtggtgt ctttcgagaa caatccctga
     1201 agcgcattct ttgcgctgtc ggtctgcgtg gccgcgggcg ccgcaacacc cttgagcgcg
     1261 gcgctcgagc ccagactttt cactgcggcg tcgagtcgcg gaagcgcctt ctcgagcgcg
     1321 ccggtcttgt ccgttatctc gaattgcagg aacgccgact tctgcacgac atccatcgcg
     1381 cgctgcggat catcgattcc gggcagctcg acgatgatgc ggtcagcacc ggctttctgc
     1441 acgagcggct ctgagacgcc gaactgatcg atgcgcgtgc gcacaacctt gagtgcacga
     1501 tcgatggcat cgcccttgtc ggctaccttc tgcttcgagt cgtcgatctc gagagccagg
     1561 tgcatgccgc cctgaaggtc gagtccgcgc ttgagcggaa cgcgctgaac tgtgtcaacg
     1621 acgtagacgc cgttgcgctt gactcgctcg gtcacggtgc gtgggaataa cgcccaggcc
     1681 gacgcggcga tcagcgcgat tatgaggaga atgcggtatt tgagagacat tgaatatcga
     1741 gattagccct taaggttacc ctgaggcgag gcaacggtca acgcagaccg cgcatcggac
     1801 tcatccagct tgatttgctg caccagcgcc tcgggcgtcg ggaacgtgcg cgtgtccctc
     1861 agacgcttca gaacatcgat cctgacttgc tggccgtaaa agtcgcctga agcgtcaaag
     1921 agatatgctt cgatcgaccg ttcgtgctct ccaaaggtcg ggcgcggccc gagattcatc
     1981 atcccgccga atgtaccgtg cggcgtagcc acgcggaccg cgtaaacgcc atccggaggc
     2041 agcagcttgc gcggtgaggg ctgcgacagg ttgagcgttg gaaagcccag agagcgccct
     2101 ctggcagctc cagggacgac tgtcccaccg atcgagtacg gccgcccgag caactctgct
     2161 gcgcgcggga ggtcgccgcc ggcgactgcg cgccggattg cggtcgatga gatccagcgt
     2221 ccgtcttcgg cggcgaccgg atcaacgacg tccacactga agccgcggct tgcgccgagc
     2281 gactgaagca cagcggcatt acccgctcgc tcgcgtccga agccgtggtc gtgcccgatg
     2341 agaaggtgct tcatgcgaaa attgtcgcgc agcacctgat cgacgaactc ggttgcgctg
     2401 cgcgacgcga gctcgtgggt gaattcgagc accaccacgt ggtccaggcc ggtcctggcg
     2461 agcgcgtcca gcttctcttc accgaccgtc agcaacgggg gcgccgctgc cggattgacc
     2521 acatcgagcg gatggggctc gaacgttatc gcgacactgt gaagcccttc actcgcggcg
     2581 acagcgacaa ggcgggaaat cacgtcgagg tggccgagat gaacgccgtc gaacgtgccg
     2641 acggtgacgg cggccccctt cacttccggc ggcagatgcg cgccgtcacg aactatccgc
     2701 gacgcactca ctcagcgatc accctgagct tgcgtactct cggactgggt gtcgcgcgaa
     2761 gatcgtcgat cgtcgcggca tccatgacgt cgaactcacc actgcgcgtt ctacgcagcg
     2821 acgtaaggtg cgccgcgctg tcacacgcgc gaccgaggtc gcgcgcgagg gcgcgtacat
     2881 acgtcccgcc accgcagatg atcgagacgt tcagctcatc gtcggtgtgc gacgcgattt
     2941 gccactcgtg caccgtgact ggagacggtg cgagcacgac actcgcgccg gcacgggccg
     3001 cgcggtaagc cggcgcgccc tgcacttttt tcgcggagaa ttcgggtggg acctgtggta
     3061 tcactccggt aagcgacgga atcgccgcca gtacagcgtc acgcgacggt cgcggtgctg
     3121 taggaatcac gtcgccggta ggatcgccgg tgtcggtctc ctcgccgaaa cggatcgtcg
     3181 cgtcgtaaac cttgggctcg ttgtcgatga aggttgcaag acgcgtcgcg cggccaagca
     3241 ggagcacaag cagtcccgtg gcgaacggat cgagtgtgcc gaggtggccg atgctacgct
     3301 cgccgtatac gcggcgcgca a
//
LOCUS       DATIMD010000401         2414 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4785171, whole genome shotgun sequence.
ACCESSION   DATIMD010000401 DATIMD010000000
VERSION     DATIMD010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4785171"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1283)
                     /locus_tag="VLI40_08860"
     CDS             complement(<1..1283)
                     /locus_tag="VLI40_08860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97328.1"
                     /translation="MEQAERGTASRSQNVVHFLPRTTDALARVITPALERMDSALSAL
                     QLMVVTPDAETAVAVGDVVAHIAGAQGIEVLPVTSANRAARMLAERPVHAIAGPAIEL
                     QTLIQRSAIKLDNLRTIVLAWVDDEMTETPAAFAAMESLFGELPKTATRVMVARRATP
                     DAEKIIDAHLRTARRMNPPEAEASPIPQISPAAPAVHYVSVSSASRPAALRRLLDELD
                     PPSAAIVVRDTASEADALQTVRSLGYRRTDDPIRIAHYNAIPASHTVILYDSPMMPSE
                     IAAATAIGPVQIVALATPRDMVPLHELAESLLPLTLGGPGSAARSRDARLREELAIVL
                     SQGVATREMLALEPLLDRYDGIEIAAAAIRLLEVERTRSASTPNQLRLVAADSTSAQQ
                     RDSRGERGSRPPRENRGREERPPRDREFRGPPRGGP"
     gene            1311..1589
                     /locus_tag="VLI40_08865"
     CDS             1311..1589
                     /locus_tag="VLI40_08865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HSU97329.1"
                     /translation="MISAIVLVRADPQRIPQCATKLAGIEGVSRVYSVSGDWDLVALV
                     EVPDFESVARVVTEEVATAPGLQKTQTLTAFRVYSKGDLEQAWDIGVN"
     gene            1579..>2414
                     /locus_tag="VLI40_08870"
     CDS             1579..>2414
                     /locus_tag="VLI40_08870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97330.1"
                     /translation="MSIDVLRAIQSLLPDVEIVQSDAPADESYSGAYSEAPRIAPAQC
                     IEGQRLRAHRVDGEPEVRFAGFLDGIQRARIACHRRGVPIVDGTVAAVVRVRVNRRFV
                     TWGHRTPIVSRRLYMPLTLLGCEGHAELGGIEIVDTSYDESTGDLVSRHPAALRAVAF
                     ERVGRARDDAERKLAELWCSDGAEPLFIDGGISGSGRVASASCAVGVVKSHQTLFADG
                     DALDIVMSLKRGERSSVFALSAKRRSPVISWYLRLRDARGHDAMFGLVRVEVSPTDDV
                     ADR"
BASE COUNT          392 a          694 c          877 g          451 t
ORIGIN      
        1 ggaccgccac gcggcggtcc gcgaaattca cggtcacggg gcggccgctc ttcgcggcca
       61 cgattctcgc ggggcgggcg ggagccgcgc tcgccgcgag aatcgcgctg ctgcgcggac
      121 gtcgaatcag cggcgacgag ccggagctgg tttggggtcg acgcgctgcg cgttcgctca
      181 acttcgagca gccgtatagc ggcggcggcg atctcgattc catcgtaccg atcgagcagc
      241 ggctccagcg caagcatctc gcgtgtggca acgccctgcg aaagtacaat cgccagttct
      301 tcgcggagtc tggcatcgcg cgatcgcgcg gccgaccctg gtcctccgag cgtgagcgga
      361 agcagcgatt ccgcgagctc gtgcagcggg accatgtctc gcggcgtcgc gagtgcaact
      421 atctgaaccg gaccgatcgc cgtggcagct gcgatctcgc tcggcatcat cggggaatcg
      481 taaagaatca ccgtgtggct ggcgggaatg gcgttgtaat gtgcaatccg tatcggatcg
      541 tcggtccggc ggtagccgag gcttcggacg gtctgaagag cgtcggcctc ggaggcggtg
      601 tcgcggacga cgattgcggc cgagggcggg tcgagctcat ccaggaggcg gcgcagagcg
      661 gccgggcggg atgcggagct gacgctcacg tagtgaaccg ctggcgctgc tggtgagatc
      721 tgagggatcg gactggcttc cgcttcgggc gggttcatcc gcctcgcggt tctcagatgt
      781 gcatcgatga ttttttcagc gtcgggggtg gcgcgccgag cgaccattac gcgggtggca
      841 gtcttgggaa gctcgccgaa gagcgattcc atggcagcga atgccgccgg cgtctcggtc
      901 atctcgtcat cgacccacgc tagaacaatc gttcgaagat tgtcgagctt gatggcagag
      961 cgctgtatga gggtttgcag ctcgatcgcg ggtccggcga tcgcgtgcac cggccgctcg
     1021 gccagcatgc gggctgcacg gttggcagag gtgacgggga ggacttcgat tccctgggca
     1081 ccggcgatgt gggcgacgac gtcgccaacc gccacggcgg tttctgcgtc gggggtaacg
     1141 accatcagct ggagcgcgga tagtgcacta tccatgcgct cgagagcggg cgtgatgacg
     1201 cgcgcaagcg catcggtcgt cctcgggaga aagtggacga cgttctggct gcgtgaagcc
     1261 gtgccgcgct cggcctgttc cattcggtgt tcgctcggta atgttatggg atgatctccg
     1321 ccatcgtgct ggtgagggcc gacccgcagc ggatcccgca atgtgccacc aagctggccg
     1381 ggattgaagg ggtatcgcgc gtgtactccg tgagtggcga ctgggatctc gtcgctctcg
     1441 tcgaggttcc cgactttgaa agcgtcgcgc gcgtcgtcac ggaagaggtt gccacggcgc
     1501 cgggcctgca gaagacacag accctgacgg cattccgagt gtactcgaag ggtgatctgg
     1561 agcaagcgtg ggacatcggt gtcaattgac gttctgcgag cgatccaatc cctgctccca
     1621 gatgtcgaga tagttcaatc ggacgcgccg gctgacgaga gttactccgg cgcgtacagc
     1681 gaggcgccgc gcatcgcgcc ggcgcagtgc atcgaagggc agcggctgcg tgcgcatcgc
     1741 gtagatggag agcccgaggt tcgcttcgcg gggtttctgg atggaatcca gcgcgcccga
     1801 atcgcatgtc atcgcagagg cgttcccata gtcgacggga ctgtcgcggc agtcgtgcgc
     1861 gttcgtgtca accgccgctt cgtgacgtgg ggacatcgca cgccgatcgt gtcgcgacgg
     1921 ttgtacatgc cgttgacgct gctcggatgt gaaggccatg ccgagcttgg cgggatcgag
     1981 atcgtggaca ccagttacga tgagagcacc ggagatctcg tgtcgcgtca ccctgctgcg
     2041 ctgcgcgcgg ttgcgttcga gcgtgtggga cgggctcgcg acgacgcgga gcgcaagctt
     2101 gcggagctgt ggtgttccga cggagcggag ccgttgttca tcgacggcgg gatcagcgga
     2161 agcggccgcg tcgcgtcggc tagctgtgcg gtcggtgtcg taaagagtca ccagacgctc
     2221 ttcgccgatg gagatgcgct ggatatagtg atgtcactca agcgagggga gcgcagctcc
     2281 gtgttcgcgt tgtcggcgaa gcgccggagt ccggtgatca gctggtatct caggctgcgc
     2341 gatgcgcgcg gacacgatgc catgttcggg cttgttcgcg tcgaggtgtc accgacggac
     2401 gatgtcgcgg atcg
//
LOCUS       DATIMD010000402         2240 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2469938, whole genome shotgun sequence.
ACCESSION   DATIMD010000402 DATIMD010000000
VERSION     DATIMD010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2469938"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VLI40_08875"
     CDS             complement(<1..341)
                     /locus_tag="VLI40_08875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97331.1"
                     /translation="MVELARRMMTRGGGIPALIALLLSAAVLGAGACAEINTDPNFAA
                     AIAIDTLPFPSIVANDSLRDSLGVARPLHGSVFNIEGNVLSSIAVSFRTPDSGATIDS
                     VSGYVVADTAR"
     gene            complement(334..1104)
                     /locus_tag="VLI40_08880"
     CDS             complement(334..1104)
                     /locus_tag="VLI40_08880"
                     /inference="COORDINATES: protein motif:HMM:NF022077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HSU97332.1"
                     /translation="MGSVLAVVSQKGGVGKTTTAVNLAAAFARRGLKTLIIDVDPQGA
                     VRYGVGLRKDHSVYGFADYLSGECALRDVILPTMLPWLRVILAGTVSDEADHVAYQSL
                     VADSELLPELLETARQRCHVVVVDTPPGLGPITHKVLLGSQHVVVPLQCEPLALQTTP
                     QILRGIQSVVELNEQLILDGLILTMYEPNNPASERVVEYVRQHLPANIVFRQLVPRTV
                     AAADAFAAGQPVVTRSPADAAAQAYINIATSLVERMDG"
     gene            complement(1105..1620)
                     /locus_tag="VLI40_08885"
     CDS             complement(1105..1620)
                     /locus_tag="VLI40_08885"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSU97333.1"
                     /translation="MSFWSRLTGKTASQKPQKLDYLSEALALERQGDYDAALTSYRLA
                     MRDQPSNFKVLQNMAIAYTKVGQPEQAIRCYRGALHIEPRLAGAHYGLAFLLLKRGDI
                     ADAAYHLDAFLLDAPKSPEATRWVTHARETLDALRTSNGEVNDDVAGDMTTDSVDADL
                     AAMDQPPEDAE"
     gene            1666..2190
                     /locus_tag="VLI40_08890"
     CDS             1666..2190
                     /locus_tag="VLI40_08890"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HSU97334.1"
                     /translation="MPRRTSIDPARGVLVVEWPLFGELSRGLALKVARAYQPDIVVGV
                     ATAGVVPGAVVAAMLGRDFHSILVSRKYHSEVIRETPAVFGEAPPQALNRRVLLVDET
                     CDGGDTLRLAIAALHHAGAVEVRTAVCFRTGSYEPDYHALATESAVVLPWDREVIVDG
                     TLVPNPVYRELING"
BASE COUNT          403 a          692 c          725 g          420 t
ORIGIN      
        1 ctgcgtgcag tatctgctac gacatagccg ctgacgctgt cgatcgtcgc gccggaatcc
       61 ggagtgcgaa agctcaccgc aatcgacgaa agcacgttac cctcgatgtt gaacaccgaa
      121 ccgtgcagcg gacgcgcgac gccgagcgag tcgcgcaacg agtcgttcgc cacgatcgat
      181 gggaacggca gggtgtcgat cgcgatggcc gctgcgaagt tcggatccgt attgatctcc
      241 gcacaggcac cggctcccag cacggcagcg ctgagcagta aagcgatcaa cgcagggata
      301 ccgccgccgc gcgtcatcat cctgcgggcg agctcaacca tccattcgct cgactagcga
      361 agttgcgatg ttgatgtacg cctgtgctgc tgcgtccgcg ggactgcgcg tgacgacagg
      421 ctgaccggcg gcgaacgcgt cagccgccgc aaccgtacgc ggcacgagct ggcgaaatac
      481 gatattggcg ggcaggtgct gcctcacgta ctcgacaaca cgctcgctgg cgggattgtt
      541 gggctcgtac atggtgagga tgagtccgtc cagtatcaac tgctcgttca gctcgaccac
      601 gctctgaatc ccgcgcagga tctgcggcgt cgtctgcaac gcgagcggct cgcactgcag
      661 cggcaccacg acgtgctggc tgccgagcag aaccttgtgc gtgatcggcc cgagtcctgg
      721 cggtgtgtcg acaaccacga cgtgacagcg ctgacgcgcg gtttccagca gctcgggaag
      781 cagctccgag tccgcaacca ggctctggta tgcaacgtga tcggcttcgt cgctgaccgt
      841 gcccgcgaga atcacacgca gccacgggag catcgtcgga agaatcacgt cgcgcagagc
      901 gcactcgcca ctcagataat cggcgaagcc ataaaccgag tgatccttgc gcagccccac
      961 accgtagcgg acggcgccct gtggatcgac gtcgatgatg agtgtcttga gtccgcgccg
     1021 cgcaaacgcg gcggcgagat tcaccgcggt agtcgtcttg ccgacgccac ctttctggct
     1081 gacgacggcg agaactgaac ccacttactc ggcgtcctcg ggcggctggt ccatcgctgc
     1141 cagatcagcg tcgaccgagt cagtcgtcat gtcgcccgcg acatcgtcgt tcacctcgcc
     1201 attgctggtc cgcaacgcat ccagcgtctc tcttgcatgc gtgacccagc gggtggcttc
     1261 agggctcttg ggtgcgtcga gcaggaaggc atcgagatgg tacgcagcgt cggcgatgtc
     1321 accgcgcttg agcaggagga aggcgagtcc gtagtgtgcg ccagccaatc gtggctcgat
     1381 gtgcagcgca ccgcggtaac agcggatggc ctgttccggc tgtccaacct tggtgtaggc
     1441 gatcgccatg ttctggagca ccttgaagtt gctcggctgg tcgcgcatgg cgagacgata
     1501 cgatgtgagt gccgcatcgt aatcgccctg acgctcgagc gcgagagcct cgctcaggta
     1561 atccagcttc tgtggcttct gtgacgcagt ttttcctgtt agccggctcc agaacgacat
     1621 taggtgaagc tatcgaggac gcaccgttcg ggctagcttg ctatcatgcc tcgacgcaca
     1681 tccattgatc cggcgcgcgg cgtcctcgtg gtcgagtggc cgctctttgg cgagctctcg
     1741 cgcggtctgg ccctcaaggt cgctcgcgcg taccagccgg atatcgtcgt gggtgtggcc
     1801 accgccggcg tcgtcccggg tgccgttgtc gccgcaatgc tgggccgcga cttccactcg
     1861 atcctggtga gccgtaagta ccactccgaa gtcatccggg aaacgcctgc cgtttttggc
     1921 gaggccccgc cacaggcgct gaatcgccga gtgttgctgg tggacgagac gtgcgacggc
     1981 ggtgatacgc tgcggcttgc gattgccgct ctccaccacg cgggagcagt cgaggtgcga
     2041 acagctgttt gcttccggac ggggagctac gagccggatt accacgcgct ggcgaccgaa
     2101 agcgcggtgg tcctgccttg ggatcgcgag gtgattgtcg atggaacgct cgttccaaat
     2161 ccagtctacc gcgaattgat aaacgggtag ggggacggag tggggacgga ctccgcgtga
     2221 attcgctaag tgcaagcagg
//
LOCUS       DATIMD010000403         5394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5074030, whole genome shotgun sequence.
ACCESSION   DATIMD010000403 DATIMD010000000
VERSION     DATIMD010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5394
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5074030"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(80..3271)
                     /locus_tag="VLI40_08895"
     CDS             complement(80..3271)
                     /locus_tag="VLI40_08895"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HSU97335.1"
                     /translation="MSDHVAGLRLRRSSLRICAATLLSVPTLLAAQTSASARPDSVRF
                     HGMEWRSIGPNRGGRSIAVAGSSSRPLEYYFGATGGGLWKTTDGGQSWKPVTDGQLQS
                     SSVGAVAVSESNPDVVYIGMGETDIRGNIMQGDGVYKSTDGGKKWTHMGLAETQAIAK
                     IRIDPGNPDIVYVAALGHPSAPNTERGVFKSSDGGKTWRKILYRDDKSGAIDLSMDPN
                     HPNVLYAALWQAYRTSWQMSSGGPGSGLFKTTDGGEHWTEITRNAGLPTGIIGRIGVS
                     VSPADANRVYAIVEASDGGVYRSDNAGATWKRTNDERKLRQRAFYYTHITADPRVRDR
                     VYVLNVNFFRSDDGGTHFDSTLAVPHGDNHELWIASNDNQRMIEANDGGGTVSVNGGK
                     TWTDQNFPTAQLYHVATTSDFPYHVCGAQQDNTTLCLPSNDWANLRGAGSRKLGDWMY
                     EVGGGESGYIAPDPRHPDIFYAGSQGALLSRYDRSNGQFRDVQVYPRFFSGEPSSALP
                     ERWQWTYPIVFSPRDSTTIYTSSQHLWKTTDEGQTWQRISPDLTRADPKTLGVSGGPI
                     THDMNGPEVYATIFTIAPSPLDTSVIWTGSDDGMAYVTRDGGRTWTNVTPPTLPAFAR
                     ISLIDASHHEPGTAYLAAKRYLQDDRAPYIYRTHDWGKTWTKIVTGIRADDYVHSVRE
                     DPTRPGLLYAGTEHGFYVSWNDGAEWNKFSLNLPDVQVSDIAVEKNDLVIATHGRSMY
                     VLDNIAPIRHADDTRGAITLFTPPVATRRVDSATVQYSLASRADTVRIDILDHDGKLV
                     RTFLGGGEQHRDSTKSPTAPSRPDIAVQDTVLYPTGCEPPRRRGGDARPTGRAGLNTF
                     AWDLRYPGAVSFQCLIMWGGSADRGPLAVPGEYTVRVTAGSATATQPLTVRMDPRLKG
                     VTERDLVEQFGLSMQIRDRVSAADTAVIRIRQMRSKIADRIARAKASDVTEAGNATAA
                     KLLAIEEELYQTRNRSGQDPLNFPIRINNRIAALGSSVESGDARPTAASYVVFKQLSA
                     ELDGILRRLDAVVASSVATFDATVKRHNLPPIV"
     gene            complement(3355..4263)
                     /locus_tag="VLI40_08900"
     CDS             complement(3355..4263)
                     /locus_tag="VLI40_08900"
                     /inference="COORDINATES: protein motif:HMM:TIGR00745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketopantoate reductase family protein"
                     /protein_id="HSU97336.1"
                     /translation="MRIAILGAGGVGGYFGALLARAGHDVILYARGDNLAAIRASGIT
                     IKDANGSFTVPIGATNSPDELGGAEFTIVAVKSYSLAEVAPVARDLALGGSVIVPLLN
                     GVEAADDLARAGVPRGQLLGGQTNVSAFKVEPGVIQRALWQERIVVGELDGVLSERVT
                     RLVEGLRQADIEAIATTNIIVELWRKFNMLCAMAAACGMARSNVAGIRDTELGHLLIE
                     RAVGEIAAVGRARGVPIPPSQEADMMHHIDKLPGTMKPSFLLDIERGGPTELDVLSGA
                     VSRFGRETGIPTPVHDTAAAVLARHT"
     gene            4413..>5394
                     /locus_tag="VLI40_08905"
     CDS             4413..>5394
                     /locus_tag="VLI40_08905"
                     /inference="COORDINATES: protein motif:HMM:NF016763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HSU97337.1"
                     /translation="MTPAHARAARLAYVVVILIATLSNLHADPTWADVPPRLVRALDL
                     TPRLSDAIDAVRNILLFAGLGVVWIATSRLRHPVATLLRITVIAFVMSGCIEALQLFS
                     PVRNASLIDVTTDTIGGLAGGVITLAAFAIMEDTARERSYLGVPSALFAVTYGVATLM
                     EAFMPLFRQDLLPQLGGSVGERIGRAITAIRPESIAEIPLIDVLIFFPAGVFGVIALM
                     ESGVPAAVAAIITVCIAAIIYPVAEVVHGVAAEPIVLGAALTHVVAAGLGAMVAAGAT
                     GLFATRYSMRTRARIVGGAYAVAIAVWSWRPFRLDLSGAAMAEQFTPSHIV"
BASE COUNT          927 a         1692 c         1675 g         1100 t
ORIGIN      
        1 cgaagtaggg cgcagattta ttcgcgccgc tcgtcattcc cgcttacgca ggtgcgaaag
       61 cgggaatgac gagagtgcgc tagacgatcg gcggaagatt gtgccgcttc actgttgcgt
      121 cgaatgtcgc aacggaggac gcgacaacgg cgtcgagcct ccgcaggatt ccgtcgagct
      181 ccgccgaaag ttgcttgaac actacgtacg acgcggccgt cggtcgcgca tctcccgatt
      241 cgacgctcga tccgagcgcc gcgattcgat tgttgatcct gatcgggaag ttgagcggat
      301 cctgaccgct tctgttgcgc gtctgataga gctcttcctc tatcgccaat agttttgcag
      361 ccgttgcgtt tccggcttct gtcacatccg acgccttcgc gcgagcgatc cggtccgcga
      421 tcttgcttcg catctgccgt atgcgaatca ctgctgtgtc cgccgccgag acccggtcgc
      481 gaatctgcat gctcaggccg aactgctcga cgagatccct ctccgtgaca cccttgagcc
      541 tcggatccat gcgcaccgtg agcggttgtg tggccgtcgc cgagcccgct gtgacgcgta
      601 cagtgtattc tcccggaacg gcgagcgggc cgcgatcagc ggatccgccc cacatgatca
      661 gacactggaa cgacacggca cccgggtagc ggagatccca tgcgaaggta ttgagccccg
      721 cgcgaccggt tgggcgcgcg tcgccgccgc gtcgacgtgg aggctcgcaa ccggttggat
      781 acagcactgt gtcctgcacg gcgatgtccg gtcgcgacgg cgcagtcggc gatttcgtgg
      841 aatcgcgatg ttgctctcca ccacccagaa aagtccggac gagcttgcca tcgtggtcga
      901 gtatgtcgat gcggaccgta tccgcgcgcg acgcgagcga gtactgcacc gtagcggaat
      961 ccactcggcg cgttgcgacg ggcggtgtga agagagttat cgcaccgcga gtatcatcgg
     1021 catgccggat cggcgcgatg ttgtcgagaa cgtacatcga tcgcccgtgt gtcgcgatca
     1081 ccaggtcgtt cttctcgacc gcaatgtcgg acacctgcac gtcggggaga ttgagcgaga
     1141 acttgttcca ctccgcgcca tcgttccacg aaacgtagaa tccgtgctcg gttcctgcgt
     1201 acagcagacc cggacgcgtc gggtcctcgc gcacgctgtg cacatagtcg tcggcgcgaa
     1261 ttccggttac gatcttcgtc caggtcttgc cccaatcgtg cgtgcggtag atgtaaggcg
     1321 cgcgatcgtc ctgcagatag cgtttggccg cgagatatgc ggtacccggc tcgtgatgcg
     1381 acgcgtcgat gagactgatg cgcgcgaatg caggaagcgt cggcggggtg acgttggtcc
     1441 acgtgcgtcc gccatccctc gtcacgtacg ccatcccgtc gtccgagccc gtccatatca
     1501 ccgaggtgtc gagcggagac ggagcgatcg tgaagattgt cgcgtacacc tcggggccat
     1561 tcatgtcgtg cgtgatcggg ccacccgata ctccaagcgt ctttggatct gcgcgcgtga
     1621 gatccggcga gatgcgctgc cacgtctggc cttcatcggt cgtcttccac agatgctgcg
     1681 acgatgtata gatcgtcgtg gaatccctgg gcgagaagac tatcggatag gtccactgcc
     1741 agcgctccgg caatgcgctg gatggctcgc cggagaagaa gcgcggatac acctgcacgt
     1801 cgcggaattg accgttcgag cgatcgtaac gcgacaggag cgcaccctgg ctgccggcat
     1861 agaaaatgtc tggatgcctg ggatcgggcg cgatgtatcc cgactcgcct ccgcctacct
     1921 cgtacatcca gtcgcccagc ttgcgcgacc ccgctccacg aagattggcc cagtcgttgg
     1981 agggaagaca gagcgtcgtg ttgtcctgct gtgcaccgca gacgtgatat ggaaaatcag
     2041 atgtggtcgc gacatggtag agctgcgcgg tcggaaagtt ctgatcggtc cacgtcttgc
     2101 cgccatttac ggagacggtt ccaccgccgt cgttcgcttc aatcatccgc tggttgtcat
     2161 tcgatgcgat ccacaattcg tggttgtcgc cgtgtggcac cgccagcgtg gaatcgaagt
     2221 gcgttccacc gtcgtcggat ctgaagaagt tgacgttgag cacgtacacg cgatcgcgaa
     2281 ccctgggatc tgctgtgatg tgcgtatagt agaacgcgcg ttgccgcagc ttgcgctcgt
     2341 cgttggtgcg cttccacgtt gcaccggcat tgtccgagcg gtacacgccg ccatccgatg
     2401 cttcaacgat cgcgtacacg cgattcgcgt cagcgggtga tacggaaacc ccgattcgac
     2461 cgatgatacc ggtcggcaat ccggcgttgc gcgtgatctc ggtccagtgc tcgccgccgt
     2521 cagttgtctt gaatagaccg ctcccgggcc cgccgctaga catctgccac gatgtgcgat
     2581 acgcctgcca caaggctgcg taaagtacgt tcggatgatt cgggtccatc gagagatcga
     2641 tcgcgccgct cttatcatcg cggtacagaa tctttcgcca cgttttgcct ccgtcggagc
     2701 tcttgaacac gccacgttcc gtgttcggcg cggagggatg gccgagcgct gcgacgtaaa
     2761 cgatgtcggg gttcccgggg tctatgcgta tcttggcgat cgcctgcgtc tcggcgagac
     2821 ccatgtgcgt ccacttcttg ccaccatcgg tcgatttgta cacaccgtcg ccctgcatga
     2881 tgttgccgcg aatgtcggtc tcacccatgc cgatgtacac gacgtccgga ttggattcgg
     2941 aaacagcaac cgcgccgaca gagctggact ggagctgacc gtcggtcaca ggcttccagc
     3001 tctggccgcc atcggtggtc ttccacagtc cgccgcccgt tgcaccgaaa tagtactcca
     3061 gcggccggct ggagctgccc gcgactgcga tcgagcggcc gccacggttc ggaccgatcg
     3121 agcgccattc cattccatgg aaccgaacgg aatccggtcg ggcgcttgcg ctggtttgcg
     3181 cagccagcag tgtcggtacg gatagtagcg tcgcggcgca gatgcgcagc gaagaacggc
     3241 gaaggcgtag tccggcaaca tggtctgaca cgtctacctc gtgtgatctg gattgtaagc
     3301 gaagccggcg cgacgggccg gttggtggaa caacttctgc gccgacagca cgcgtcaggt
     3361 gtgtctggcg agcaccgccg cagcggtgtc gtgcacgggc gtcggtattc ctgtctcgcg
     3421 tccgaagcgt gataccgcgc cgctcagcac atcgagttcc gtcggtccgc cgcgttcgat
     3481 gtcgagcagg aagctcggtt tcatcgttcc cggaagtttg tcgatgtgat gcatcatgtc
     3541 ggcttcctgt gacggcggaa tcggcactcc gcgcgccctg ccgacggccg ctatctcgcc
     3601 cacggcccgc tctatcaaca gatggccaag ctcggtgtcg cgaatgcccg cgacgttgct
     3661 tcgtgccatt ccgcacgcgg cggccatggc gcacaacatg ttgaacttgc gccacagctc
     3721 gacgatgatg ttggtcgtcg cgatcgcctc gatatccgcc tgtcgcaagc cctcgaccag
     3781 gcgcgtcact cgctccgaca gcactccgtc cagctcgccg acgacgatac gctcctgcca
     3841 caacgcgcgc tgaatcacac ccggttctac tttgaacgcg ctgacgttgg tctgtccgcc
     3901 gagcagttgt ccgcgcggaa caccggcgcg cgcgagatca tccgccgctt cgacgccgtt
     3961 cagaagcggg acgatcacgc tcccgcccag tgcgagatcc cgcgcaaccg gcgcaacctc
     4021 ggcgagcgaa tagctcttga cggccactat cgtgaattcc gcgccgccca gctcgtcagg
     4081 cgagttggtc gcaccaatcg gaactgtgaa gctgccgttg gcgtccttga tggttattcc
     4141 ggacgcgcgg atcgccgcga gattgtcgcc gcgtgcgtac aggatcacat catgtcctgc
     4201 gcgggccagc agggcgccaa aatagccgcc gacaccgcca gcaccaagaa ttgcgattct
     4261 catctgttga tcaggtgatt ggttccagac tgaatcaaga tgtaactatt ccggcaccga
     4321 tgtgagaggg gcaggaggct tattgcagca cgagacttgt ttttcgccat caacggtgcg
     4381 agcgtaggca accggaaatg cgtccatcct cgatgactcc agcccatgcc cgcgccgcgc
     4441 ggctggcgta cgtcgtggtc attctcattg cgacgctcag caatctgcac gctgatccca
     4501 cgtgggcgga cgtcccgccg cggctcgtcc gcgcgctgga tctcactccg cgcctgagcg
     4561 atgccatcga cgcggtgcgc aatatccttc tttttgcggg gttgggcgtc gtctggatag
     4621 ccacgagcag actgcgacac ccggtcgcga ccctcttgcg catcaccgtc atcgcgtttg
     4681 tgatgagtgg ctgcatcgag gcgctgcagc tcttctcgcc agtccgcaac gcgagcctca
     4741 tagatgtaac gaccgatacg atcggtggcc tcgcgggcgg cgtcatcact ctcgcggcgt
     4801 tcgcgatcat ggaagatacg gcgcgcgaac ggtcgtatct cggcgttccg tccgcgttgt
     4861 ttgccgtgac atatggcgtt gcgacgctca tggaagcgtt catgccgctc ttcaggcagg
     4921 atctgctgcc gcagctcggg ggaagtgtag gggagcggat cggacgcgcg atcaccgcga
     4981 ttcggccgga gtccatcgcg gagatccctc tgatcgacgt gctgatcttt ttcccggctg
     5041 gtgttttcgg cgtgattgcg ctcatggaga gcggtgtacc ggccgccgtg gcggcgatca
     5101 tcaccgtctg catcgccgcg atcatctatc ccgtcgccga agtcgtgcac ggagttgccg
     5161 cggagccaat cgtgctcggt gcggcgctca ctcatgtcgt tgcggccggg ctcggcgcaa
     5221 tggtcgcggc cggagcaacg ggattgtttg cgacgagata ctccatgcgc acccgcgcgc
     5281 gaatcgtcgg tggggcctac gccgtcgcga tcgcggtgtg gagctggcgg ccgttccgtc
     5341 tcgatctatc cggcgccgcg atggccgagc agttcacacc cagccacatc gttc
//
LOCUS       DATIMD010000404         8063 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_450975, whole genome shotgun sequence.
ACCESSION   DATIMD010000404 DATIMD010000000
VERSION     DATIMD010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8063
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450975"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1797)
                     /locus_tag="VLI40_08910"
     CDS             complement(<1..1797)
                     /locus_tag="VLI40_08910"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF017464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HSU97338.1"
                     /translation="MSNRRISIVATRIAGAHVVIALALIMITAGIGAPALGAQGTTAG
                     SAVPIPPVLKVFDPSYIDTTAHACRDFFAFANGAWLKRDTIPAAFSTSGVGKDMTDAN
                     ELVVRSVLDEAMASRHSEPANSTRAKLGTFYATCMDSTTAEKQGVSPIRARLDGISAI
                     RTRTELVRQIGELQKSGVGALFEFGPGADPKDANHYIAWVSQGGLGMPDRDYYTKTDP
                     ASDSLRRKYVAHVERSLVLAGESAADAATDAQRVMTLETELAKASMTRVAMRDPNATY
                     HKTALADLERTAPAMEWPSYFRTVGLTVPVKFVNVAQPEFIQKASALVQTAPLEEWRA
                     YLRYHLVSSASPWLSSPFANESFAYSSLYSGAKQMLPRWKRCLRAADRQIGEALGQAY
                     VDRTFPPAAKAAAKQVIDDIRASFHDRLLALTWMSDSTRKYALTKLAKMNEKVGYPDH
                     WRDYTALRVSDGAFVHNVFNANAFEWDRVINRPGKTVDKTEWGMTVPTVNAYYDPSVN
                     EMVFPAGALLPQTFDATGDMAANYGALGGSWAGHELTHGFDDEGRHYDADGNLRDWWV
                     ASDTSRFDEQAQRIVDQFDGYIQVDTTHVNGKL"
     gene            complement(1874..3343)
                     /locus_tag="VLI40_08915"
     CDS             complement(1874..3343)
                     /locus_tag="VLI40_08915"
                     /inference="COORDINATES: protein motif:HMM:NF012975.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HSU97339.1"
                     /translation="MSEFFDLHAAAHQAMLDNGFIPDVPAPVAAEVTAAVEPGGAMGA
                     GVRDLRDLPWSSIDNDSSRDLDQLEMAEKLPDGTVRVRVAIADVDTTVPKGSATDRFA
                     AANSTSVYTGIVTYPMLPDRLSTDLTSLGQDDDRASVVIEFVVAADGSIRSHDVYMAR
                     VDNHAKLSYNNVGAWLDGGAILPASGTLAIQEQLRLQDGVAQTLRAVRARNGALDLET
                     IEAQSVVLPDKSVDIELVEKTRASRLIEDFMIAANVAMAQFLDEHNSPTIRRIVRSPE
                     RWNRIVALAATLGTTLPDQPDSIALSAFLVARRKADPDHFADLSLAVVKLIGPGEYAA
                     HLPGETDVGHFGLATNDYTHSTAPNRRFADLVTQRLLKAALAGKPSPYTRDELVAIAA
                     HCTEREDAARKVERQVRKSAAAVSMSHRVGDSFDAIVTGVNQNGTFVRLIHPPVEGRV
                     LRGEENLDVGDKVRVRLLSTDPKRGFIDFSANSGNGASH"
     gene            3470..3850
                     /locus_tag="VLI40_08920"
     CDS             3470..3850
                     /locus_tag="VLI40_08920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97340.1"
                     /translation="MKVIPASVHRSLDMVSVIGLIAAPILLGMSGPPAIVSYVLAAIH
                     LIVTLSTKFPDTGHKPLSLRAHGMIELVVGIVLIVLPWAASWSGVARSYYVAVGVILL
                     IVWSLSNYGRQYGAERAQKARERA"
     gene            3880..4524
                     /locus_tag="VLI40_08925"
     CDS             3880..4524
                     /locus_tag="VLI40_08925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97341.1"
                     /translation="MSIASAFVLGLAACGGGTRDGTKDVAKHGANGARSTPPEQTVAP
                     SADETSAAGTSAAAKPSDEGPIMEGDHSIIRTEAVGPLHVGEWRRPVMSFVYAITARA
                     GRDSAGIIVVRGIGKDTLTLTFQNDTLRRVFITHTGPHTTGGLAVGTPFATVAGDSGV
                     TIAKRGNAKVATLSRLCGVEFATDSIALSPDSIVRKPARQPETIQAISVGYCKR"
     gene            4505..6070
                     /locus_tag="VLI40_08930"
     CDS             4505..6070
                     /locus_tag="VLI40_08930"
                     /inference="COORDINATES: protein motif:HMM:NF006596.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSU97342.1"
                     /translation="MDTASDNYASDFMSIVHVDDETVTNITFDRAVVRTLDRGSHRKT
                     KMRSLFIRTTTPVFAALLAALAPAPARAQQPPLTPNQAQAHDIYKQLIEINTADSVGS
                     VTKAVDAMAARFRAAGFPAADVQILTPDGHPTKANLVVRYHGTGHDKKPLLLLAHLDV
                     VAALRSDWSMDPFVLTEKDGYYYGRGTSDDKAMASIFVANLLRDKAAGWKPDRDIILA
                     LTSDEESGDANGVEWLVANHKDLIDAAYAINEGGGGSIRNGKPFSNSVQAAEKVSVHF
                     TVSTANSGGHSSVPRPDNAIYELAHALIKLEHFQFPVELNEVSRAYLSETGASDTSAA
                     GAAMRAIVANPGDSAAAAVLSAEPRYNSMLRTTCVATRLSGGHAYNALPQTATANVNC
                     RIVPTQSPEDVEATLARVFADTGVRISPLFPLPTARAAPSPLTPELMNAVTKITHDMF
                     GSNVIVVPVMSTGATDGRFLRAAGIPTYGVSGILSNGDSHAHGRDERMWIKSYYDGQE
                     FLYRLTHALAGGK"
     gene            complement(6108..6989)
                     /locus_tag="VLI40_08935"
     CDS             complement(6108..6989)
                     /locus_tag="VLI40_08935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HSU97343.1"
                     /translation="MPELPDITIYVEALGARILHQRLVALRVLNPFVLRTFDPPLTES
                     NGREVVEIGRIGKRIVIGLDGELFIVIHLMIAGRLRWLSNGKAAPKKLSLAALEFAAG
                     TLILTEAGTTRRASLSLVRGREALSQIDRGGLDVFVVDFSTFAARLRSENHTLKRSLT
                     DPRLFDGIGNAYSDEILHRACLSPVALSGRISDGDALRLYEATRAVLREWTDRLRAEA
                     GDKFPERVTAFRPEMAVHGKYRQPCPVCGTPVQRIRYASNETDYCARCQTNGKLLADR
                     GLSRLLKQDWPKSVDDL"
     gene            complement(7119..>8063)
                     /locus_tag="VLI40_08940"
     CDS             complement(7119..>8063)
                     /locus_tag="VLI40_08940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97344.1"
                     /translation="GRSAYMSRAARWISPAVLLAITFAACQKGETGTKAGATTSATTA
                     TTPATDSTTVSQTAELQAQKDSLMGVTRSLLAAMASIDSATSSAGVKAKNKGEPITSY
                     EEGVRARTVQALARLKSTQARLRTINARVSRLGGENTQLKSQVTEFQSTVAALQTQLA
                     SSQARADSLVRQLYASNIRGDSLQYRTQQLGYTIDSTAYENRRVFVVSGTADYLIKHH
                     IAQAVGGSRFPFIVKIGQTIRPTNGHPDSTLFRAFDMSAMTTVPVDTTRTYEVISSQD
                     LTGADRSNAKGRVFHGAIHITDPKTFWRPSPYLILLVP"
BASE COUNT         1581 a         2466 c         2465 g         1551 t
ORIGIN      
        1 aagcttgccg ttcacgtgtg tggtatcgac ctggatgtag ccgtcgaact gatcgacgat
       61 acgttgtgcc tgttcgtcga accgcgacgt gtcgctcgcg acccaccagt cgcgcaggtt
      121 gccgtcggcg tcgtagtggc gaccctcgtc gtcgaagccg tgcgtaagct cgtggccggc
      181 ccagcttcca ccgagtgcgc cgtagttggc agccatgtcg ccggttgcgt cgaacgtctg
      241 agggagaagc gcacccgcgg ggaagaccat ctcgttcacc gacggatcgt agtacgcgtt
      301 gactgtcgga accgtcattc cccactcggt cttgtcgacc gtctttccgg gacgattgat
      361 gacgcggtcc cactcgaatg cgtttgcatt gaacacgttg tgcacgaacg caccgtcgga
      421 gacgcgcagc gcagtatagt cgcgccagtg gtcaggatag ccgaccttct cattcatctt
      481 cgccagcttg gtgagcgcat acttccgcgt ggagtccgac atccacgtga gcgcgagcag
      541 acgatcgtgg aacgaggcac gaatgtcgtc gataacctgc ttcgccgcag ccttcgctgc
      601 cggcgggaat gtcctgtcga cgtacgcctg gcccaacgct tcaccgatct gacgatcggc
      661 cgcacggaga cagcgcttcc agcgcgggag catctgcttc gcgccgctat agagtgacga
      721 ataggcgaag ctctcgttcg cgaacggcga gctgagccac ggagacgcgc tcgagacgag
      781 atggtatctc aaatacgcac gccattcctc cagcggcgca gtctgcacga gcgcgctcgc
      841 cttctgaatg aattccggtt gtgcgacgtt gacaaacttc actggaacgg tgagcccgac
      901 ggtacggaaa taactcggcc actccatcgc cggcgcggta cgctcgagat ccgcgagcgc
      961 ggtcttgtga tatgtcgcgt tcggatcgcg catcgccacg cgtgtcatcg atgcctttgc
     1021 caactccgtc tcgagcgtca tcacacgctg tgcgtcggtc gcggcatcgg ctgccgattc
     1081 accggcgagc acgagtgacc gctcgacatg tgctacgtat ttcctgcgca gcgaatcaga
     1141 cgccggatcg gttttggtat agtagtcgcg gtccggcatt ccaagtccgc cctgactgac
     1201 ccacgctatg tagtggttcg catccttcgg atcggcaccg ggaccgaact cgaacagcgc
     1261 tccaacaccc gatttctgca gctcgccgat ctgtcgcacg agctcggtac gtgtcctgat
     1321 tgcagagata ccatcgagcc gcgcgcggat cggactcaca ccctgcttct cggcggttgt
     1381 cgagtccatg catgttgcgt agaaggtgcc gagcttcgct ctggtgctgt ttgccggctc
     1441 gctgtggcgc gaagccattg cctcgtccag caccgagcgc acaacgagct cattcgcgtc
     1501 ggtcatgtcc ttgcctacgc ccgacgtgga gaacgccgca ggaatcgtat cgcgcttgag
     1561 ccatgcgcca ttggcgaatg caaagaagtc gcgacatgcg tgcgcggttg tatcgatgta
     1621 tgaaggatcg aagaccttga gtacgggcgg aatcggtact gcagaaccgg cggtcgtccc
     1681 ctgcgcgcca agtgcagggg caccgattcc agctgtgatc atgataagcg cgagcgcgat
     1741 tacgacgtgt gctcccgcaa tgcgcgtggc cacgatcgag atgcgtctgt ttgacatcgt
     1801 tgagttgttc ggaggtcgga ggagtgtctg gatatcgtaa cgccgcgcca gtccggtgac
     1861 cagcgctggg tggtcagtgg ctggcgccgt tgccggagtt cgctgaaaaa tcgatgaaac
     1921 cgcgtttcgg atcggtggac agtagccgga cacgtacctt gtcgccgacg tccagattct
     1981 cctcgccgcg aagcacgcgc ccttccacgg gcgggtgaat cagacggacg aaagtaccgt
     2041 tctggttgac gcctgtgaca atggcatcga agctgtcgcc gacccggtgt gacatcgata
     2101 cagctgcggc ggactttcgc acctgccgct cgaccttgcg tgcggcgtcc tcgcgctcgg
     2161 tgcagtgcgc cgcaatcgcc acgagctcgt cgcgtgtgta aggcgatggc tttccggcca
     2221 gggcggcctt gagaagtcgc tgcgtgacca gatcggcgaa gcgccgattc ggcgctgtcg
     2281 agtgcgtgta atcattggtt gcgaggccga aatggccgac gtccgtctct cccggcagat
     2341 gcgcggcgta ttcgccgggc ccgatcagct ttacaacggc gagcgacaga tcggcaaagt
     2401 ggtcaggatc cgccttccgg cgagcgacga ggaacgcaga tagtgcgatc gaatccggct
     2461 ggtccggaag cgtcgtgcca agcgtggcgg cgagcgccac gatgcgattc catcgctcgg
     2521 gcgaccgcac gatgcgtcga atcgtcggcg agttgtgctc gtccagaaat tgcgccatcg
     2581 ccacgttggc agcgatcatg aaatcctcga tcaggcggct cgcgcgagtc ttctccacca
     2641 gctcgatgtc gaccgacttg tcggggagca cgaccgactg cgcttctatc gtctcgagat
     2701 ccagcgcccc gttgcgtgcg cgaaccgcgc ggagcgtctg cgcgacgccg tcctgaagac
     2761 ggagttgctc ctgaattgcc aacgtgcccg aggccggcag gattgcgccg ccatcgagcc
     2821 atgcgccgac attgttgtag gaaagctttg catgattgtc cacgcgcgcc atgtacacgt
     2881 cgtgcgatct gatgcttccg tccgcggcaa ccacaaactc gatcactacc gacgcgcgat
     2941 cgtcgtcctg accgagcgat gtaagatcgg tcgacaggcg atccggaagc atcgggtacg
     3001 tgacgatgcc agtatagact gaagtcgagt ttgcagccgc aaatcgatcg gtcgcagatc
     3061 ctttgggcac tgtcgtatcg acgtcggcga tcgcgacgcg cacgcgcacc gttccatccg
     3121 ggagtttctc cgccatctcc agctgatcca ggtctctgga gctgtcgttg tcgatcgagg
     3181 accatggaag atcgcgaagg tcgcggacgc cggctcccat cgcgccgcct ggctctaccg
     3241 ctgcggtgac ctctgccgca accggggccg gcacgtccgg gatgaagccg ttgtccagca
     3301 tcgcctggtg cgccgcggca tgcaagtcga aaaattctga cataccataa cgtgtctgcc
     3361 ggagcgagcc ggcacaagcc agctcagttc ggctcgctcc ggcatggcgg cgggccacgc
     3421 cagcccggtg cagatttggt atgttgaatc gtctccaccg ggatttcaga tgaaggtcat
     3481 accagcatcc gtgcaccgct ccctcgacat ggtctccgta atcggcctga tcgcggctcc
     3541 catcctgctt ggcatgagcg ggcctccggc aatcgtttca tatgttctgg cggcgatcca
     3601 cctcatcgtc actctatcga cgaagtttcc cgacacgggc cacaagccac tgtcgcttcg
     3661 ggctcacggg atgatcgagc tggtcgtcgg aatcgtgctg atagtgctac cctgggccgc
     3721 gagttggagc ggagtcgcac ggtcttacta cgtagctgta ggagtgatcc tcctgatcgt
     3781 ctggtcgctg tcgaattatg gacgccagta tggcgccgag cgtgcacaga aggcacggga
     3841 gcgggcgtga cgagaacgat gcacgtacga acgtgcgcta tgagtattgc gtcggcattc
     3901 gtacttggac ttgcagcgtg cggcggaggg accagggacg gtacgaaaga cgttgcaaaa
     3961 cacggtgcaa acggcgcacg atccactcct cccgaacaga ccgtcgcgcc gagtgcagat
     4021 gagacgagtg ccgctgggac gagtgcggcg gcgaagccgt cagacgaagg gcccataatg
     4081 gaaggagatc attcgatcat ccggaccgaa gccgttggtc cgctacacgt cggtgagtgg
     4141 aggagacctg tgatgtcgtt cgtgtacgcg ataaccgcgc gcgccggccg ggacagcgcg
     4201 ggtatcatcg tcgtccgtgg aatcggaaag gataccctga cactcacgtt ccagaacgat
     4261 acgctgcgaa gggtattcat tacgcacacg gggccgcaca ctaccggtgg cctggcggtc
     4321 gggacaccgt tcgcgaccgt cgccggcgat tcgggcgtga caatcgcgaa gcgcggcaac
     4381 gcaaaggtcg caacactcag ccgcctgtgc ggcgtcgaat tcgcgactga ttcgatcgca
     4441 ctcagcccgg acagcatagt ccgaaagccg gcgcgacaac cggagactat tcaggcgatc
     4501 tctgttggat actgcaagcg ataattacgc cagcgatttc atgtcgatag ttcatgtcga
     4561 tgacgaaact gtaacgaaca tcacctttga ccgtgcggtc gtacgcacgc tcgatcgcgg
     4621 ctcacacagg aaaaccaaga tgcgttcact ttttattcgt accacgacgc cggtattcgc
     4681 ggcgctgctg gccgcactcg cccccgcacc cgctcgcgcg cagcagcctc cgctcacgcc
     4741 gaatcaggcg caggcgcacg acatttacaa gcagctgatc gagatcaata ccgcggatag
     4801 tgtcggttcg gtgacaaagg cggtcgacgc catggccgcg cgctttcgcg cggctggctt
     4861 cccagcggcg gatgtgcaga tcctgacgcc ggatgggcat ccaaccaagg caaatctggt
     4921 cgtgcgttat cacggaacag gccatgacaa gaagccgctg ctccttttgg cgcacctcga
     4981 tgtggtagcg gcgctgcgct ccgactggag catggatccg ttcgttctta ccgagaagga
     5041 cggttactac tacggacgtg gcaccagcga cgacaaggcc atggcctcga tcttcgtcgc
     5101 gaatctcctg cgtgacaagg cggctggatg gaaaccggat cgcgacatca ttctcgcact
     5161 tacgtcggat gaagaaagcg gcgatgcgaa tggtgtcgag tggctggtcg caaatcacaa
     5221 ggacctgatc gacgccgcgt acgcgatcaa cgaaggcggc ggcggctcca ttcgcaatgg
     5281 caagccattc tccaacagcg ttcaggcggc ggagaaggtc tcggtccact tcaccgtctc
     5341 gaccgccaac agcggcggcc actcatcggt gccacgcccg gacaatgcga tctacgagct
     5401 tgcgcatgca ctcatcaaac tcgagcactt ccagttccca gtcgagctga acgaggtgtc
     5461 acgcgcgtat ctgagcgaaa cgggcgcatc agacacgtcg gccgctggcg cggcgatgcg
     5521 ggcaatagtc gcgaatccgg gtgacagcgc cgccgcggca gtgctatctg cggagccacg
     5581 ctacaattcg atgttgcgca ctacctgcgt ggcaacgcgg ctctccggtg gccacgctta
     5641 taatgccctg ccgcagacgg cgactgcgaa cgtgaattgc cggatcgtcc cgacgcaatc
     5701 gcccgaggac gtcgaagcga cactcgcgcg cgtcttcgcc gacaccgggg tcaggatcag
     5761 tccgctattt ccattgccga cggccagggc agctccaagc cctctgacgc cagagctcat
     5821 gaacgccgtg acgaagatca ctcacgacat gttcgggtcg aacgtgattg tggttccggt
     5881 aatgtctacc ggtgcgaccg acggccgatt cctgcgcgca gccggaattc ccacctatgg
     5941 tgtgagtggg attctgagca acggagactc gcacgctcat ggacgggatg agcggatgtg
     6001 gatcaagtcg tactatgacg gccaggaatt cttgtaccgc ctgacacacg cgctggcggg
     6061 tggaaagtag acggatcccc gccggcgagg atgacggtcg ttacacctca cagatcatcg
     6121 accgacttgg gccagtcctg cttgagcaac cgtgagagcc cacggtccgc cagcaacttt
     6181 ccgttggtct gacatcgcgc acagtaatca gtctcgttac tcgcgtaccg aatgcgctgg
     6241 accggcgttc cgcataccgg acatggttgc ctgtacttgc catgcactgc catctccggg
     6301 cggaacgccg tgacgcgctc cggaaattta tcgccggcct ccgcgcgcag acgatcggtc
     6361 cactcgcgta acactgcacg cgttgcctca tacaacctga gcgcgtcgcc gtcgctgatg
     6421 cgcccgctca gcgcgaccgg tgaaagacac gcacgatgca gtatctcatc ggaatacgca
     6481 ttcccgattc catcgaacag ccgcgggtcc gtgagcgatc gcttcaacgt gtgattctca
     6541 ctccgcaggc gcgcagcgaa cgtgctgaaa tccactacga acacgtcgag cccgccgcga
     6601 tcgatctgcg acaaggcttc cctgccgcga accagtgaca gcgacgcgcg tcgcgtggtt
     6661 ccggcttcgg tgagaatgag agtccccgcg gcaaactcca acgcggcgag actcagcttc
     6721 ttcggcgcgg ctttcccatt cgacagccag cgcaaccggc cggcgatcat gagatggatc
     6781 acgatgaaca attcgccatc caacccgatc acgatccgct tcccgatcct gccaatctcc
     6841 acaacctcac gcccattcga ttcggtgagt ggaggatcga aggtccggag cacgaacgga
     6901 ttcagcacgc gcagtgcaac gagccgctgg tgcagaatgc gcgcacccag cgcctcgacg
     6961 tagatcgtga tatcaggaag ctcaggcact atgcgtcacg tcaggaattc gtgcaacaga
     7021 gaatggaagt tcgactggtc agaaattgta acacaaaaat gggcccggca gcattacgcc
     7081 gccggaccca tttcctgaaa cgccttatcg tgtcgctctt atggcacgag cagaatcagg
     7141 taaggcgagg gccgccaaaa ggtcttcggg tcagtaatgt gaatggcccc gtggaacact
     7201 cggcccttgg cattggaccg atcagcaccg gtgagatcct gcgatgagat gacctcgtac
     7261 gtgcgcgtcg tatcgaccgg aaccgtcgtc atagcggaca tgtcgaatgc acggaacagc
     7321 gtcgaatccg ggtggccgtt cgtcggccgg atggtctggc cgatcttcac gatgaacggg
     7381 aaacgcgatc cgccaaccgc ctgtgcgatg tgatgcttga tgagatagtc cgcggttccg
     7441 ctcacaacga acacccggcg attctcatac gctgtggaat cgatggtgta gccgagctgc
     7501 tgcgtacggt actgcagcga atcgccacgg atgttcgacg catagagctg ccggaccagc
     7561 gaatcggcgc gcgcttgcga cgaagcaagc tgagtctgca aagcggcgac agtcgactga
     7621 aactccgtga cctgtgactt caactgggtg ttctcgccac ccagccgcga aacccgggcg
     7681 ttgatggtgc ggagacgggc ctgggtgctc ttgagacgag cgagggcctg aaccgtccgt
     7741 gcacgtacgc cttcttcata ggaagtgatc ggctcgccct tgttctttgc ctttacgcca
     7801 gctgaggagg tagccgagtc gattgacgcc atcgcagcca gaaggctgcg ggtgacgccc
     7861 atgagtgagt ccttctgtgc ctgtagctcc gccgtctggg aaacggttgt ggaatccgtc
     7921 gcaggcgtag tggcggtcgt agctgacgtg gtagcgcccg ccttcgtgcc agtttcaccc
     7981 ttctggcaag cggcgaacgt aatcgccagc aagacagctg gtgatatcca tcttgcggca
     8041 cgactcatat atgctgatct ccc
//
LOCUS       DATIMD010000405         5744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2471398, whole genome shotgun sequence.
ACCESSION   DATIMD010000405 DATIMD010000000
VERSION     DATIMD010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5744
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2471398"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1722)
                     /locus_tag="VLI40_08945"
     CDS             complement(<1..1722)
                     /locus_tag="VLI40_08945"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU97345.1"
                     /translation="MGATASLNVALAGRYTIEREIGRGGMAVVYLARDIKHDRPVALK
                     LLHPELGAVLGVERFLSEIRVTANLQHPHLLPLFDSGEADGQLFYVMPYVDGENLRAR
                     LDREKQLPIDEALRLILAVLSALAYAHERGIIHRDLKPENILLQGGEPVVADFGIALA
                     VSNAGGQRVTQTGLSLGTPHYMSPEQATGDRTLDARSDIYAIGAVLYEMLAGEPPHTG
                     STVQAIIAKVITERPRSLRLARDTVPESVDDATMKALAKLPADRWATAHDFADALRGS
                     VTTGAREGRGRFSLIARRARRAAQSLNAWRAAAALLLVAGAVLAWLALRPVPDSGELQ
                     IARQLTFEGDVIAAAISPDGAWLAYVSDDCYGQPYTCTKTLQVREVDGTQSVKLATWP
                     TLLRNVRWSPDGTTIAFAGAPDSTAPALYLIPRLGGSPQRVGAAAAAWAFTPDDKLVE
                     VVDAPEHQSLLWLDPHTLARTDSAPLPRGMLFADLAPNSVNGSFALAGFYAGATILAL
                     LDSRGHLLDSTTAFNVRDDVRWDRTHTGILELSPAPGTSDNLLRIPVSRGKLQRAQRR
                     VVLGEVSD"
     gene            complement(1824..4472)
                     /locus_tag="VLI40_08950"
     CDS             complement(1824..4472)
                     /locus_tag="VLI40_08950"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU97346.1"
                     /translation="MADSASDPLTARLQPSLDGRYRIERELGAGGMATVYLAEDVKHH
                     RRVAIKVLHPELSAILGTERFLKEIELTANLQHPHILPLFDSGSADGLLFYVMPYVEG
                     ETLRGRLDRERQLPVADAVRIASEVADALEYAHKRAVIHRDIKPENVLLHDGRALVAD
                     FGIALAVQEAGGQRMTQTGLSLGTPQYMSPEQAMGERTVDARTDIYALGAVTYEMLVG
                     EPPFTGPTAQAIVAQVMTASPPSLSSRRATVPPNVDEAVATALQKLPADRFGSASEFA
                     HALSDPLQSGRRRAVRTASGAHGASRAIMATLVVVAMLAGLAGGYAIRRMTGSSADDS
                     VVVSTLMPPAKEQWPVMNVGGGGFSISPDGRRVALITNPRDSVGSLVIRSLDAAATTA
                     LPGTRGATVPFWSPDGRSLGFFADHQLKTIDIASGTVRTLCPAPNGNGGAWNARGVIL
                     FAPEDATVLYRVSATGGDCAALPLRGVLPGTDAAVFFMPDGDHFVFSSDGQTWLGRLG
                     DDSLHLLRANTLSESVFAAPDYLIFYAPPADLYAQRIDAHSNKLVGQPHRIFAHVNSP
                     YGYLAVSASQTGTLLAETGGSGASAAGATLTVATRGSPMADSIAIHAPAWWFRLAHDG
                     RRIALGGFSLSTMDMDRGVATVVATGSDSAVQTFGSPVWAPHDSMIAVANGYLHFVAS
                     VYDPRSGRARRLFDSPDPTRQVTLMDWSPDGRQLAFSLGSGRNGGHAEPWVYDVLTGT
                     SHRLFAEAADVTQMRFSPDGRWLAYQSNVSGSDEIYLRAPASPGTPVRVSTAGGRLPR
                     WRGDARELYYAAPNGTVLAVTVGAPGVPPSQPRTVDVSPPSGAAYVDMQPTPDGQRFL
                     FTPAPTTDPGLTLIQNWRKLLPGSAR"
     gene            complement(4696..5394)
                     /locus_tag="VLI40_08955"
     CDS             complement(4696..5394)
                     /locus_tag="VLI40_08955"
                     /inference="COORDINATES: protein motif:HMM:TIGR01409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HSU97347.1"
                     /translation="MSRNSESGGTSRRRFLGALAAGAGAAGVAALPFSLSAAEAETPF
                     TNPEDPDSWFAGIKGKHRAVFDIFEPHGVFPFLGPMVFLMTNASTGTPAKDCSVVVII
                     RHEAVPFALGSNLWKKYKLGEATKVTDPETKALAVRNIFWQPKPGDFVLPGLGNARVG
                     IDQLQAQGVMFFACGAALMSMSAGVAQQTKQDPKTVQQEFMTSVLPGVHVLPSGVWGL
                     GRAQEHGCAYCFAY"
     gene            complement(5524..>5744)
                     /locus_tag="VLI40_08960"
     CDS             complement(5524..>5744)
                     /locus_tag="VLI40_08960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97348.1"
                     /translation="LESRAAHGGYVDPYAIARVYAAIGDTTRMWPSLTRAVTSGVWEL
                     WGLHSDPAFRAYRNDARFQRLDERARQL"
BASE COUNT         1059 a         1810 c         1852 g         1023 t
ORIGIN      
        1 atcgctcacc tcgccaagca ccacacgtct ctgcgcacgc tggagttttc cgcgcgatac
       61 gggaatgcgc agaagattgt cggacgtgcc gggagccggg ctgagctcga ggatgccggt
      121 atgggtgcga tcccagcgga catcgtcgcg gacgttgaac gcggtggtac tgtccagaag
      181 gtgcccgcgg ctgtcgagca gcgctagaat agtggcaccc gcgtaaaagc ccgcaagcgc
      241 gaaggatccg ttaacggagt ttggcgccag atcggcaaac aacattcctc gcggcagtgg
      301 cgcactgtcc gttcgcgcga gtgtatgcgg atcgagccac aggagtgact ggtgttctgg
      361 cgcatcgacg acttccacca gtttgtcgtc gggcgtgaac gcccatgctg cagcggccgc
      421 gccaactcgt tgcggtgagc ctcccaggcg cggaatgaga tacagcgccg gcgctgtcga
      481 gtccggcgcg ccggcgaagg ctatggtggt gccatcgggt gaccagcgca cgttccgcag
      541 gagcgtcggc cacgtggcga gctttacgga ttgtgtaccg tcaacttcgc gcacctgcag
      601 tgtttttgtg caggtgtatg gttgaccgta gcagtcatca ctcacgtacg cgagccacgc
      661 accatcgggc gagattgccg cagcaatcac atctccttcg aatgtgagct gtcgcgcgat
      721 ctgcagctcg cctgaatccg gaactggccg cagagcgagc cacgcgagca ccgcgccggc
      781 gacaagcagc agcgccgccg ctgcccgcca cgcgttgagc gattgtgccg cgcgccgcgc
      841 gcgccgcgcg atcaggctaa agcgaccacg tccttcgcgc gctcccgttg taacgctgcc
      901 tcgcagtgca tccgcaaaat catgcgccgt cgcccagcga tctgcgggga gcttcgcgag
      961 tgccttcatc gtcgcgtcgt ccaccgattc gggcacggtg tcgcgcgcaa gacgcagact
     1021 gcgtgggcgc tcggtgatca ccttcgcgat aatcgcctgc accgttgagc cggtgtgcgg
     1081 cggctcgccg gcgagcattt cgtacaacac ggcgccgatg gcgtagatgt cgctgcgcgc
     1141 gtcgagtgtg cgatcgcccg ttgcctgctc gggcgacatg tagtgcggcg tgccgagcga
     1201 gagacccgtc tgtgtgacgc gctgtccacc cgcgttgctg acggcaagcg cgatgccgaa
     1261 gtccgcaacc acaggctcgc cgccctgcag caggatgttc tcgggcttga gatcgcgatg
     1321 tatgattccg cgctcgtgcg cataggcgag cgccgacagt acggcgagaa tgagtcgcag
     1381 cgcttcatcg attggcagct gcttctcgcg atccagtcgt gcgcggagat tctcgccatc
     1441 cacgtacggc atcacgtaga acaactgccc gtccgcctct ccggaatcga acagcggaag
     1501 cagatgcggg tgctgcaggt tggcggtgac gcgaatctct gagaggaagc gctccacgcc
     1561 gagcacggca ccgagctccg ggtgcagcag cttgagcgcg accggtcggt cgtgcttgat
     1621 gtcgcgcgcg agatagacaa cggccatacc gccgcgtccg atctcgcgtt cgatcgtgta
     1681 gcggccggcg agagcgacgt tcagtgacgc ggtggcaccc atgcgcgaaa gaataccatg
     1741 cctttgtcgg aggcgtaaga gcggcgcggc gcggcgatta cgcgctcgcc gccaacttta
     1801 tccccttcgc cagccgctcg cagttaccgt gcgctgcccg gaagcagctt ccgccagttc
     1861 tggatcagcg tcaatccggg atccgtcgtc ggagctgggg tgaacaggaa tctctgcccg
     1921 tcaggggtgg gctgcatgtc gacatacgcc gcgcctgacg gcggcgaaac gtcaacggtc
     1981 ctgggttgag acggtggaac acctggtgca ccaacggtga cggcgagcac cgtcccgttc
     2041 ggcgctgcgt aatacaactc gcgcgcatcc ccgcgccagc gcggcagccg gccgcccgca
     2101 gttgaaacac gcaccggcgt acccggactc gcgggcgctc ggagatagat ctcgtccgat
     2161 ccgctgacgt tggattggta tgccagccat cgtccgtcgg gtgagaagcg catctgcgta
     2221 acgtcggcgg cttcggcgaa cagccggtga cttgttcccg tgagcacatc gtagacccac
     2281 ggctctgcat gaccaccgtt acgaccggag ccgagtgaaa acgccagctg cctcccatcc
     2341 ggtgaccagt ccatgagggt cacttgtcgc gtcgggtcag gcgaatcgaa cagccgacgg
     2401 gcacgaccac ttcgcggatc atagacgctc gctacgaagt gcagataccc gtttgcaacc
     2461 gcaatcatcg aatcatgcgg agcccatacg ggactaccga acgtctgcac cgcggaatcc
     2521 gaacctgtcg cgacaacggt cgccactcca cggtccatgt ccatcgtgga caggctgaag
     2581 ccgccgagcg caattctgcg cccgtcgtga gcgagccgaa accaccaggc cggtgcatgg
     2641 attgcgatgg agtcagccat tgggctaccg cgagtcgcaa ctgtgagagt cgcccctgcg
     2701 gcactggcgc ccgagccacc cgtttccgcg agcagcgtcc cggtttgcga cgccgacacg
     2761 gcgagatagc cgtacgggct gttgacatga gcgaagattc ggtgaggttg accgaccagc
     2821 ttgttggaat gcgcgtcgat gcgctgcgcg tagagatccg caggtggagc gtagaaaatc
     2881 agatagtcgg gtgcagcgaa caccgactcg gagagcgtgt tggcacgcag gaggtgaaga
     2941 gaatcgtctc caagacgtcc gagccacgtc tgtccgtccg agctgaatac gaagtggtcg
     3001 ccgtcgggca tgaagaatac ggcggcgtct gttcccggga gaactccgcg cagcggcagc
     3061 gcagcgcagt cgccgccggt cgctgagaca cggtacagca ccgttgcgtc ctcgggagca
     3121 aacagtatca cgccgcgagc gttccacgcg ccaccgtttc cgttgggggc cggacacaac
     3181 gtacgcacgg tccccgacgc gatgtcgatc gtcttcagct ggtggtccgc gaagaagccg
     3241 agggatcttc cgtccggtga ccagaatgga acggtcgcgc cgcgagttcc gggaagcgcc
     3301 gtggtcgccg cggcgtcgag cgagcggatc acgagcgagc caacggagtc gcgtggattc
     3361 gtaatcagag cgacgcgtcg cccgtccggt gaaatcgaga agccgccgcc accgacgttc
     3421 atcacgggcc actgttcttt ggccggcggc atcagcgtcg agaccacgac actgtcgtct
     3481 gcgctggagc cggtcatgcg ccggatagcg tagccaccgg cgagaccagc gagcattgcg
     3541 actacaacga gtgtcgccat gattgcgcgt gacgcgccgt gcgctccgga cgcagttcgc
     3601 acagcacgtc tgcgtccgct ctgcagcggg tcggacaatg catgcgcgaa ctcgctggcg
     3661 gatccgaatc tgtcggcggg aagtttctgc agagcagtcg ctactgcctc gtcgacgttg
     3721 ggcggcactg tcgcgcgcct ggacgaaagt gatggcggcg acgcagtcat cacctgcgcg
     3781 acgatcgcct gcgctgtggg cccggtgaac ggaggttcac ctacgagcat ctcatacgtc
     3841 accgcgccca gtgcgtagat gtccgtgcgt gcatcgacgg tgcgctcgcc catcgcctgt
     3901 tccggcgaca tgtactgcgg agtgccaagc gaaaggccgg tctgcgtcat gcgctgccca
     3961 ccagcctcct gcaccgccag ggcaataccg aagtcggcga ccagtgcgcg gccatcgtgc
     4021 agaagaacgt tctccggctt gatgtcgcga tgaatcacgg cgcgcttgtg agcgtactcc
     4081 agcgcatcgg ctacttccga tgcgatccgc actgcgtcag cgacgggaag ctgtcgctct
     4141 cgatccagcc tgccgcgaag tgtctcgccc tcgacgtagg gcatcacata gaagagcaat
     4201 ccatcggcgc ttccactgtc gaaaagaggc aggatgtgcg gatgctgaag attggctgtg
     4261 agctcgatct ccttcaggaa gcgctcggtg ccgagtatcg cagagagctc cggatgcagc
     4321 accttgatcg cgactctgcg gtgatgcttt acatcttccg cgagatagac agtcgccatg
     4381 ccgcccgcgc cgagctcgcg ctcgatgcgg tagcgaccat cgagagaagg ctggagtcgc
     4441 gcagtcaggg gatcggacgc agagtcggcc atggtgcgcg ataatctacg gcctgagatg
     4501 agggcagggg tgctacgcgt tcgctcgtag gttcaaccgg gctcgtcgat ccggatttgc
     4561 gccgtgcgcg acgcccgggt ggatattagt agcggctggg tcaggtcttg ccccgtgcgc
     4621 ggtcaaacga acgcgcggtg tagcgaaagc ccgcaatcac cgggagcggc gcacggggca
     4681 agacctgacc ctacttcagt acgcgaagca atacgcgcag ccgtgctcct gcgcgcgtcc
     4741 cagtccccac acacccgacg gcagcacgtg cacgcccggc aggacagacg tcatgaattc
     4801 ctgctgtacg gtcttgggat cctgtttcgt ctgttgcgcc acgccggcac tcatggacat
     4861 cagtgccgcg ccacatgcaa agaacatcac tccttgtgcc tgcagctgat cgatgccgac
     4921 gcgcgcattg ccaagccctg gcaacacgaa gtcaccgggt ttgggttgcc agaagatgtt
     4981 gcgaacggcg agagccttgg tctcgggatc ggtgaccttc gttgcttcgc cgagtttgta
     5041 cttcttccac agattgctcc ccagtgcgaa cggaactgct tcatgtcgta tgatgacgac
     5101 gacgctgcaa tcctttgccg gcgtaccggt gctcgcattg gtcatcagga agaccatcgg
     5161 acccaggaac gggaacacgc cgtgcggctc gaagatgtcg aaaactgcgc gatgctttcc
     5221 cttgatcccg gcgaaccacg aatccggatc ctcggggttt gtaaatggag tttcagcttc
     5281 ggcggccgac agtgaaaatg ggagcgccgc tacacctgct gcgcccgccc ctgcagccag
     5341 agcgccgagg aaacgacgcc ggctggtacc gccactttcg gagttacggg acatgatgtg
     5401 tttgggttgg ggtgttttga cccgcgtgcg gtaaacgcta cgcgcttatt cgcgatccgc
     5461 aataacccgt ttcatcaata attaattcat tttgcccagg ccgcccgggc caatggcgcc
     5521 gggtcaaagc tggcgggcgc gctcgtccag tcgttgaaat cgcgcgtcgt tccggtacgc
     5581 cctgaatgcg gggtcgctgt gcagtcccca gagctcccag acgccggacg tcacggcccg
     5641 agtcaaggac ggccacattc gcgtcgtgtc accgatcgcc gcatacactc tggcgatcgc
     5701 gtacggatcc acgtagccac catgcgccgc gcgcgattcg agcg
//
LOCUS       DATIMD010000406         4257 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3339354, whole genome shotgun sequence.
ACCESSION   DATIMD010000406 DATIMD010000000
VERSION     DATIMD010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4257
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3339354"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VLI40_08965"
     CDS             complement(<1..251)
                     /locus_tag="VLI40_08965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97349.1"
                     /translation="MVIRNHFKASGATMLASCSIVLPLLLATGSCASVARDPAPDSSG
                     AFVTTLGRDTVVVESFTRTDDKLEGNIVVRVPGTVLLHYV"
     gene            complement(371..970)
                     /gene="wrbA"
                     /locus_tag="VLI40_08970"
     CDS             complement(371..970)
                     /gene="wrbA"
                     /locus_tag="VLI40_08970"
                     /inference="COORDINATES: protein motif:HMM:TIGR01755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003955 - NAD(P)H dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase type IV"
                     /protein_id="HSU97350.1"
                     /translation="MSKVRLAVIYYSTYGTNHQMSEIATEAAKAAGAEVRLLKIAETA
                     PEATVMGQPAWKAQAERTAHIPSPTSQDMEWANAYLFSAPTRYGVSASQLRAFIDTMG
                     PLWLAGKLSNKAVSAMSSAQNMHGGQESTILGLYTTMMHWGAIIVTPGYTDPIFYKAG
                     GNPYGVSVTANGQPISDDVKEAIRVQARRLVTFAEKLAE"
     gene            complement(1037..1351)
                     /locus_tag="VLI40_08975"
     CDS             complement(1037..1351)
                     /locus_tag="VLI40_08975"
                     /inference="COORDINATES: protein motif:HMM:NF017320.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CHY zinc finger protein"
                     /protein_id="HSU97351.1"
                     /translation="MNVDEETRCAHYHSPLDIIAIKLRCCGSYYACKECHDALADHSL
                     APWPAASFDTHAILCGACGAELTINEYLGCGSRCPRCAAGFNPGCARHHHFYFSIAEP
                     TA"
     gene            complement(1443..1709)
                     /locus_tag="VLI40_08980"
     CDS             complement(1443..1709)
                     /locus_tag="VLI40_08980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97352.1"
                     /translation="MFLTSVIRGLPLAAAMLVSAGFATACAPTRNVYDSSYNDNHRWD
                     RREDAAYRRWEAEQHLRHIAYEQRVVDEQRAYWTWRHEHPEDGR"
     gene            complement(1818..>4257)
                     /locus_tag="VLI40_08985"
     CDS             complement(1818..>4257)
                     /locus_tag="VLI40_08985"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HSU97353.1"
                     /translation="RAAMALFQTLVLDSPGHSRHLEGAPALAVILVVLGLIAAFIIRF
                     FKVRRHARLATQAKGAAEAELRTLFAAMQDIVFVVDRNGNYTRVPTTNASVPYRPTPD
                     LVGRNVSDVLPAEAATTICNVSAQVVDTQRTIQTELKIQAEGRSVWFAATASPFDGRM
                     VLWVARDITETRIARDALAHSERRYRLLFDRNPCAMWVYDFDTRQITEVNDAAVAQYG
                     FTRDEFARMKLDDLRASDDVGRLSRILAEMPSDEPRVHVVKHRRKDGSVMDVETRGHP
                     LGIPGRHLRLVVITDVTERLAAEHVVREAEKRAMATSLMLQDLIDAAPQAMIVLDANW
                     NVTRWNDAAEALFGWSSGEVVGAPLPFVPEDQRERVEAWHRSLEHGVTEKPTEAVRTR
                     KDGTRVNVMLAVAPLVDADGHATAFIAVYMDITERKLLEEQLRQSQKMEAIGTLAGGV
                     AHDFNNILTVISSYAAMLMTDDRYPDIRADIEEISSAARRATGLTRQLLTFSRKAIVQ
                     LQSIDINSVVEEMHPMLRRLLMEHIQLIIKPSGVASSVMADLSQLEQILLNLTVNAAD
                     AMPDGGSLVIETHNVWLDEAYAEMHTGVVPGPYVLLAVTDSGTGMDADTIRKIFEPFF
                     TTKEIGRGTGLGLATIYAIVKQLGGHIWVYSEPQQGAAFKIYLPRDMSAAPAELAPVP
                     QLPQSATGTVLLVEDDTAVRRAARRMLERVGFRVIEAQDGEEGLSVAAGYDGEITVVV
                     TDLMMPRMNGGDFARALAVSRPGSRIVFTSGYTDDAVLRKRLVTSTHAFVQKPFTGDQ
                     LVRTITSVLAEPAS"
BASE COUNT          770 a         1343 c         1297 g          847 t
ORIGIN      
        1 acgtagtgca gcagtaccgt gccggggacg cgcacgacga tgttgccctc gagcttgtcg
       61 tccgtacgag tgaagctttc gacgacgacg gtgtcgcgtc caagtgtggt aacgaaagct
      121 ccgctactgt ctggagctgg atcgcgcgcg accgatgcgc agctgcccgt cgcgagcaga
      181 agtggaagaa cgatcgagca ggacgccagc atcgttgcgc cggaagcttt gaagtggttg
      241 cggattacca tcgctccgcc cgaaacatgt gcgcacgcaa cggcacacgg tagcgcctgc
      301 cgtgtcagca accggtgata aatatttttg gatttttgac aaccgcgcgc caaagatcgc
      361 gcgacgtcga ctactcggct agcttctccg cgaacgtgac gagtcgccga gcctgcacgc
      421 ggatcgcctc cttcacgtca tctgagatcg gctgtccgtt ggcagtgacg ctcaccccgt
      481 acggatttcc gccggccttg tagaagatgg ggtcggtgta gcccggcgtc acgatgatcg
      541 caccccagtg catcatcgtc gtgtacaggc cgaggatcgt ggactcctgg ccgccatgca
      601 tgttctgcgc gctcgacatc gcggacacgg ccttgttgga cagcttccct gcaagccaga
      661 gagggcccat ggtatcgatg aacgcgcgca gctggctggc ggatacaccg taacgcgtag
      721 gggcgctgaa gagatacgcg ttggcccact ccatgtcctg gctcgtcggc gacgggatgt
      781 gcgccgtccg ttcggcctgg gctttccacg caggctggcc catcacggta gcctccggcg
      841 cggtctcggc gatcttgagc agccggactt ccgcgccggc cgccttcgcg gcttcggtag
      901 cgatctccga catctggtga ttggttccgt aagtgctgta atagatgact gcgaggcgaa
      961 ctttcgacat tgggcgcgcg tggtgagagt tgtacgcgag cgttcggtcg catcattcgc
     1021 gccaccggaa tggaactcag gcggtcggtt ccgcgatcga aaaatagaag tggtgatgcc
     1081 tggcgcatcc gggattgaag cccgccgcgc agcgagggca gcggcttcca cagccgaggt
     1141 actcgttgat cgtcagctcg gctccgcacg caccgcacag aatggcgtgc gtgtcgaaag
     1201 acgcagccgg ccatggcgcc aggctgtggt cggccagcgc atcatgacac tccttgcatg
     1261 cgtaatagct gccacagcag cggagcttga tagcgatgat gtcgagcggg ctatgatagt
     1321 gcgcgcagcg cgtctcctcg tcgacgttca cgccacgaat ctgcggccga tcagtcggat
     1381 tcactccatt gcgatcagcg agagatccca tacctggaaa ttctaacgtg tttcccgcac
     1441 ggctatcgcc cgtcctcggg gtgctcgtgg cgccacgtcc agtaggcgcg ctgctcgtca
     1501 accacgcgtt gctcgtacgc gatgtgccgg agatgctgtt ccgcctccca tcggcggtac
     1561 gccgcgtctt cccgtctgtc ccatcggtga ttgtcattgt acgacgaatc gtagacgttg
     1621 cgcgtcggcg cgcaggcggt tgcgaagccc gccgagacca gcatggcggc ggcgagtgga
     1681 aggccgcgta tcactgacgt caggaacatt ggggctggag tctccgtgag agggcacagc
     1741 tgatgcgccg caagcgagcg catcagctgt gacggagata ccgcggcttc gttaactgtc
     1801 cctgcggggt ttccttttca ggaagcaggc tccgcgagca ccgatgtgat cgtccgcacg
     1861 agctggtcac cagtgaacgg cttctggaca aaggcatgag tggacgtcac gagccgtttg
     1921 cgcagcaccg cgtcgtcagt gtaccccgat gtgaagacga tgcgcgatcc cggcctgctg
     1981 actgccagcg ctcgggcaaa gtcgccgccg ttcatcctcg gcatcatgag atcggtcacc
     2041 acgacggtga tctcgccgtc gtagcccgcc gcgaccgaca atccctcctc gccgtcctgc
     2101 gcttcgatta cgcgaaagcc aactctctcg agcatcctcc gcgcggcgcg acgaactgcc
     2161 gtatcgtctt cgacgagcag gacggttcca gttgcggact gcggcagttg tggcacgggc
     2221 gcgagttccg caggcgcggc cgacatgtcg cgcggaaggt agatcttgaa cgccgcgccc
     2281 tgctgcggct cgctgtatac ccagatgtgc ccgccgagct gcttgacgat ggcataaatc
     2341 gtcgcgagcc cgagccccgt gccgcgaccg atctcctttg tcgtgaagaa cggctcgaaa
     2401 atcttgcgaa tcgtgtcggc gtccattcca gtgccggagt ccgtgactgc cagcagcacg
     2461 tacggaccgg gtacgacacc cgtgtgcatc tcggcgtagg cttcatccag ccagacgttg
     2521 tgcgtctcga tcacgaggct gccgccgtcc ggcatcgcgt ccgcagcatt gaccgtgaga
     2581 ttgagcaata tctgctcgag ctggctcaaa tccgccatca cgctgctcgc aacgccgctc
     2641 ggcttgatta tcagctggat gtgctccatc agcagacgcc gcaacatcgg atgcatctct
     2701 tcgactacgc tattgatgtc gatcgactgc aactgaacaa tcgcctttct actgaaggtc
     2761 aggagctgac gcgtgagccc cgttgcgcga cgcgcggcgc tgcttatctc ctcgatgtcg
     2821 gctcgaatgt cggggtaccg gtcgtctgtc atcaacatcg cggcgtacga cgatattacc
     2881 gtgaggatgt tgttgaagtc gtgtgcgacg ccgccggcaa gtgtgccgat cgcctccatc
     2941 ttctgcgatt gccggagctg ctcttcgaga agcttgcgtt cggtgatatc catgtagaca
     3001 gcgatgaacg cggtcgcatg tccatccgca tccaccagtg gcgcgaccgc gagcatgacg
     3061 tttacgcggg ttccatcctt ccgtgtccgc actgcttcag tcggcttctc ggtaacgccg
     3121 tgttccaggg atctgtgcca ggcctcgacg cgttcacgct gatcttccgg aacgaagggc
     3181 aacggagcgc cgacgacttc cccggaactc catccaaata gcgcctcggc agcgtcgttc
     3241 cagcgcgtga cgttccagtt cgcatccagg acaatcatcg cctgcggagc cgcatcgata
     3301 agatcctgca gcatcagact ggttgccatc gcacgttttt cggcttcgcg cacgacgtgt
     3361 tcggcagcga gccgttcggt aacatcggtg attaccacca ggcgcagatg cctgcctgga
     3421 atgccaagcg gatgtccgcg cgtctcgaca tccatgacgc tgccgtcctt ccttctatgc
     3481 ttcaccacgt gaacgcgcgg ctcgtcactc ggcatctccg ccagaatgcg cgacaaccgg
     3541 cccacgtcgt ccgaagcgcg cagatcgtcc agcttcattc gcgcaaattc gtcgcgggta
     3601 aagccgtact gagccaccgc ggcatcgttc acttccgtaa tctgtcgcgt gtcgaagtcg
     3661 tacacccaca tcgcacacgg attgcgatcg aacagcagac gatagcgacg ctcgctgtgc
     3721 gccagcgcgt cacgcgcaat ccttgtttcc gtgatgtcgc gcgcgaccca cagcaccatg
     3781 cgtccgtcga acggcgacgc cgtcgcagcg aaccagacgg accgtccctc tgcctggatc
     3841 tttaactcgg tctggatcgt tcgctgcgtg tcgacgacct gcgcggaaac gttgcagatc
     3901 gttgtcgcag cttccgccgg aagaacgtcg ctcacattgc gcccgacgag atcgggagtg
     3961 gggcggtacg ggacgctcgc gttcgtggtt ggaacgcgcg tatagtttcc gttccgatcc
     4021 acgacgaaca cgatgtcctg catggccgcg aatagtgtcc tgagttccgc ctcagccgcg
     4081 cccttcgctt gcgtcgccag tctggcgtga cgcctgacct tgaagaacct gatgatgaac
     4141 gccgcaatca ggccaagcac aaccagaatg accgcgagcg caggcgctcc ttcgaggtgc
     4201 ctcgaatggc cgggactgtc gagaaccaga gtctggaaca gcgccatggc ggcgcgg
//
LOCUS       DATIMD010000407         2379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3054573, whole genome shotgun sequence.
ACCESSION   DATIMD010000407 DATIMD010000000
VERSION     DATIMD010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3054573"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VLI40_08990"
     CDS             complement(<1..185)
                     /locus_tag="VLI40_08990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97354.1"
                     /translation="MRLAPKDALAGARVRERDIFQRLDAPPTIPLREYCQDQRVDVVR
                     ASRMRWPNPQPAPEVNDR"
     gene            complement(437..595)
                     /locus_tag="VLI40_08995"
     CDS             complement(437..595)
                     /locus_tag="VLI40_08995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97355.1"
                     /translation="MTDMDAVSAAQLMAARETEAQFWRHPSFRTSICVSEHRSLLENA
                     NRSVSSIS"
     gene            complement(624..1646)
                     /locus_tag="VLI40_09000"
     CDS             complement(624..1646)
                     /locus_tag="VLI40_09000"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HSU97356.1"
                     /translation="MDTIGLDLHKRESQLCILTDDGELIERRIVTSRARFSEVLGSRP
                     PARILLEASTESEWVARHLESHGHTVVVADPGFAPMYATRSKRVKTDKRDARTLCDAL
                     TLGAYRGIHRASDAQRHIRAELAVRDALVRTRTRYVAMIKAFVRREGLRLPSGEVEGT
                     EAKLAQLVLPLHTTQQLAPLVALLAPINAEIDAADARLLGYSKDNPVVGRLRTMPGIG
                     PVTAIAFVAALDDVARFQNAHQVQAYLGLVPSEFSSGDRQVRGHITKRGDARLRWLLV
                     EAAWRILRSPNPELAALKAWAEQIAARRGRRIAVIALARRLAGILYAMWRDGADFRSR
                     PVARAA"
     gene            1795..2322
                     /locus_tag="VLI40_09005"
     CDS             1795..2322
                     /locus_tag="VLI40_09005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97357.1"
                     /translation="MRPNHGLLRHFLAAIAYRTAKALRSAPPEYEAFAAGMQVRTPRQ
                     LVRHMSGVINYAIALVREPRAILTDCNTYTGEVERLFALLRELSDELRQRAELDERTA
                     ERLLQGPLADAMAHAGQLALLRRLSGNPIPPENFFDATIDAERLGVEQADARNPDGEW
                     PEAPESWSRRAANER"
BASE COUNT          421 a          768 c          754 g          436 t
ORIGIN      
        1 cggtcattca cttctggagc cggctgcgga ttgggccagc gcatccggct ggcgcgcacg
       61 acgtcgacac gctgatcctg gcagtactca cgcagcggga tggttggtgg cgcatccagg
      121 cgctggaaaa tgtcacgctc acgaacccgc gcaccggcca gggcatcctt cggagccagc
      181 ctcatgggcc tgagtcttag accacacgat tgcggccaag cagcactcgg cgggcgtacc
      241 cggcagtgac gcgctggaac ggtcggctgg ccaactcctc gagcggccgc ataacgttgc
      301 agccggcgaa cgatttcagg attgcgcatg ctatgcatgc gcttttattt ggctcgcccg
      361 cagcttctgt gaagcggcgc gcggtgtcaa ggaccacatc gatctgatgt ggtctgttgt
      421 atttgatggt ggtcgatcac gagatgctgc tcacgcttct gttcgcgttc tcgaggagcg
      481 agcggtgctc gctgacgcag atggaggtgc ggaaggacgg gtggcgccaa aactgagctt
      541 cggtctcacg agcggccatc agctgcgccg cgctcaccgc gtccatgtca gtcacctgtg
      601 atcgatcgct gttcacgtga ccgctaggcc gcccgagcga cggggcgcga tcggaagtcg
      661 gccccgtcgc gccacatcgc atagagaatt cccgcgagcc gacgggccaa cgcaatcacg
      721 gcgatgcgcc tgcctcgccg tgccgcgatc tgctccgccc acgccttcag cgccgcgagc
      781 tcggggttcg gtgagcgcag aatgcgccac gctgcttcga cgagcaacca gcgcagacgc
      841 gcgtcaccgc gcttggtgat gtggccgcgc acctgccgat cgccggaact gaattcactc
      901 ggcactaggc cgagatacgc ttgcacttga tgagcattct gaaatcgcgc gacatcgtcg
      961 agcgccgcca cgaaggcgat cgcggtcacc ggcccgatcc cgggcatggt ccggagtcga
     1021 cccaccaccg gattgtcctt gctatagcca aggagccgcg cgtccgccgc gtcgatttcc
     1081 gcattgatcg gcgcgagcag cgcgacaagt ggcgccagtt gctgcgtggt gtggagcggc
     1141 aacaccaatt gcgcgagctt tgcttctgtc ccctcgacct cgccactcgg tagccgcaag
     1201 ccttcgcggc ggacaaatgc tttgatcatc gccacgtacc gtgtccgcgt acgcacgagc
     1261 gcgtcacgca ccgcaagctc cgcacgaatg tggcgttgcg catcggatgc acgatgaatc
     1321 ccgcgataag cgccaagcgt gagcgcgtcg cataacgtgc gcgcgtctcg cttatcggtc
     1381 ttcacccgct tggagcgtgt cgcgtacatc ggcgcgaagc ctgggtccgc gacaacgacc
     1441 gtgtgaccgt gcgattccag atgccgcgcg acccactcac tttccgtcga cgcctcgagg
     1501 agaatacgcg cgggcggccg cgagcccaag acttcgctga agcgtgcgcg cgaggtcacg
     1561 atccggcgct cgatcagttc gccgtcatca gtcaggatgc agagttgact ctcgcgtttg
     1621 tgcagatcga gtcctatcgt atccatgagg ctggccctcc gagttggttg ttgcggcact
     1681 gaccgcgtgt acgcctgtgg ggcgaaacac tgccaccacg aactcggggt ggccagccgc
     1741 ttcataccaa ctgagctcgg gcgttaggcg tccatcccgt gtcactggaa ggtcatgcgc
     1801 ccgaatcacg gacttctgcg ccattttctc gcagcgattg cataccggac ggcgaaagcg
     1861 cttcgcagcg caccgccgga atacgaggcg ttcgctgccg gcatgcaggt acgcaccccg
     1921 cgacaactcg tccgtcacat gagtggcgtc atcaactacg cgatcgccct cgtgcgcgaa
     1981 ccgcgagcca tcctcacgga ctgcaacacg tacacgggcg aggtagaacg gttgttcgca
     2041 ttgcttcgcg agctgtcgga cgagcttcgc cagcgtgccg aactcgatga gcggacggcg
     2101 gagcggctac tccaggggcc gctcgctgat gcgatggcgc acgcgggaca actcgctctg
     2161 ttgcgtcgct tgagcggcaa tccgattccg cctgagaatt tctttgacgc cacgatcgac
     2221 gccgagcgcc tcggggttga gcaagccgac gcccgcaatc cggacggcga atggccggag
     2281 gcgccggaga gttggtcgcg cagggcggcg aacgaacgct gaacctgacg agcgatttat
     2341 ggaattgcga atgctgcgca ttcgcttctt atttggctc
//
LOCUS       DATIMD010000408         6286 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1612267, whole genome shotgun sequence.
ACCESSION   DATIMD010000408 DATIMD010000000
VERSION     DATIMD010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6286
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1612267"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..1401
                     /locus_tag="VLI40_09010"
     CDS             160..1401
                     /locus_tag="VLI40_09010"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HSU97358.1"
                     /translation="MIGTLLLHVADSDIVTPANIWHHWGGDPGALLSIALVAVMYGVG
                     VRRLWTRAGKGHVVSHVEVTWFYLGIITLLVALCSPLDAVADTLFSAHMLQHVLLIGV
                     AAPLAILGAPLLPFLWCLPHDARVAGGRAWNTTGMRRGAAVLVKPLTAWAFHTVALWG
                     WHLPGPYSAALASAPIHALEHSCFYLTALLMWWVALKPLRGHGGIGGALFVILGTMAQ
                     SGALGAILTFSGTPWYHAQSAGAALWHLTALEDQQLAGLIMWIPAGFVYLIALLAVLR
                     RVFDVPEASKLASGVAAAMALIVTASISASITGCSRAPANREVAGGDAHRGALAIQHY
                     GCGSCHAIPGIPLATGAVGPPLAGIADRGMIAGIVPNTPDEMVRWIVMPQSMSPGNAM
                     PNLGVSDGQARDIAAYLYTLH"
     gene            1546..1725
                     /locus_tag="VLI40_09015"
     CDS             1546..1725
                     /locus_tag="VLI40_09015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97359.1"
                     /translation="MSRPRDRILANLDEMYREAFERAKATGDQSQMATLDFAYRREQL
                     YFEILLDVRDAMERR"
     gene            1748..2686
                     /locus_tag="VLI40_09020"
     CDS             1748..2686
                     /locus_tag="VLI40_09020"
                     /inference="COORDINATES: protein motif:HMM:TIGR03718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HSU97360.1"
                     /translation="MIHSPLVPWIAFNAVVLIALAIDLGLFSTSKKLSVKEAAIRSAV
                     WVALALLFAAGVFYFQGHLAGVEFITGYLVEYSLSVDNIFVMVLIFSYFNIKEEYQHR
                     VLFWGILGALVMRGLMIAAGAALFNRFGWITYVFGLFLIITGIRMGMGGEKHVDPGAN
                     PVLRLVRRLIPVYNEYEGEHFFVQVSDEKSGARRRMATPLFVVLVLIETMDLVFAVDS
                     IPAVFAVTRVPFLVYTSNVAAILGLRSLYFLLSGVVSKLRYLTIGLAFILVFVGLKML
                     TAAWYEMPTVASLGVIVLILATAAAASIYVDRKESV"
     gene            2683..2967
                     /locus_tag="VLI40_09025"
     CDS             2683..2967
                     /locus_tag="VLI40_09025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97361.1"
                     /translation="MTGTVGTGLSVVVTNARVRTGNPARPWATALGIRAGKLAVVGTA
                     AEILKMTDADTRVIDAAGQLLTLPTGTSVGSRVTLTVESDGRLMVHSSEE"
     gene            2970..3809
                     /locus_tag="VLI40_09030"
     CDS             2970..3809
                     /locus_tag="VLI40_09030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97362.1"
                     /translation="MTGFGFLVLAAPILFVGAAAPRPVTHRAPGLSYDFVLRLSRTTQ
                     DGKIDRGYGVRGHASVLGDHVRVDFDEHAAPPGMTGSYFLSNDAGAHAIIVAADKHQT
                     IEMSMPALVKKFSNSSGNFGGLLNQATDVNVDVQDLGAGPDMFGQPTKHDQLVEVKTI
                     NGNVRDAAQHERDSVIVDLFYAPGLQNLINPFVSEPPFAGRMDGLGPEDMQRYLAARA
                     KLYPGLAPLRAVTRETTTDANGKSVKFVLTVMITRMESTDVDQSIFEIPEDYSKTTLQ
                     GPQ"
     gene            3812..5758
                     /locus_tag="VLI40_09035"
     CDS             3812..5758
                     /locus_tag="VLI40_09035"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSU97363.1"
                     /translation="MAPKSHPLDQILGTHAAVRVLRVLAPGGEHAPPRIARETKISRP
                     AVREAIIRLEKEGVVERVGDGRNVLYRISSNHPLAKRIVKLFKTEAKRGTLAGLLLLC
                     ASSLFAQGTVPPPKPADLIVTGGHIYTVDDTRPAAQAFAVRDGVFAFVGSTSEAMTLK
                     GPNTRVVDLHGATVVPGLADAHGHLTELGETLHEADLAGSLSYDEVIDRTKKHAAAVP
                     KGEWIMGHGWDQNRWASKQFPTSDALTRAFPDNPVVLERIDGHALLANARAMQAAKIT
                     AATKDPAGGRIVRDTKGNPTGVFVDNAQDLIGRAVPPPTDAQLEQAISAAIADVHRWG
                     LVSIHDPGEPRRIIDVMESMAKKGSFDLRGYILIADDSAAIAHYYSIGPRSELYGGHL
                     WVRSIKLYADGALGSRGAALLSPYSDDPGNTGLLVSTEAHLQSVATSALQHGFQVATH
                     AIGDRGNRNALDAYEGALKAVPTANHRFRIEHAQILDPADIPRFAQLGVIPSMQASHQ
                     TSDMRWAEDRLGPSRIRGAYAWRSLLNTGVIIPNGTDFPVENVNPLITFHSSITRADS
                     TGWPDGGWYPEQKMTRDEALKSMTIWAAYAGFQEHVMGSITPGKYADFTVLDQDIMTI
                     PASDILKTSVVSTYIGGKSVYERK"
     gene            5762..>6286
                     /locus_tag="VLI40_09040"
     CDS             5762..>6286
                     /locus_tag="VLI40_09040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97364.1"
                     /translation="MYSTCLFCHHDLGANEVVEHFPIGRRLAFDGEKGRLWVVCRACE
                     RWNLTPIEERWEAIEECERLFRDTKLRMSTEHIGLARVSEGLELVRVGDPQRPEMAAW
                     RYGDQFGKRRQRYYMIVGGGAVAAAALFSGYAVLGLYVGGGVPLLNIAASGIGQARNR
                     RIVARVPTPDGVVNV"
BASE COUNT         1180 a         1902 c         1936 g         1268 t
ORIGIN      
        1 cggaattctg atgctcgtgt acgtgctggt gcgcgccttc gccgggcact tcgattcggt
       61 tcataattac gccgtgcgaa atgcaatcct gtactggcac ttcgtggacg tcgtgtggct
      121 ggtcgtgttc acctcgctgt acctgctgcc gcggctcaaa tgatcggtac cctgctgctc
      181 cacgtcgccg actctgatat agtcacaccc gccaacatct ggcatcactg gggtggcgat
      241 cccggcgcgc tcctctccat tgcactcgtt gcagtgatgt atggtgtcgg agtacggcgc
      301 ctgtggacca gggctggaaa ggggcatgtg gtgtcacacg tcgaggtaac gtggttctat
      361 ctcggaatca tcacattgct cgttgcgctg tgctctccgc tcgatgctgt ggccgacacg
      421 ttgttctccg cgcacatgct gcagcacgta ctgctcatcg gagtcgcggc gccgctcgca
      481 atcctcggag cgccgctgct tccgtttctg tggtgcctgc cgcacgacgc tcgtgtggcc
      541 ggtgggcgtg catggaatac gacgggaatg cgtcgcggcg ctgcggtact tgtaaagcca
      601 ctgaccgcgt gggcgtttca cacggtcgcg ttgtggggat ggcatcttcc cggcccgtac
      661 tccgccgcgc tcgccagcgc gcccattcat gcactggagc acagctgctt ctatctcacc
      721 gcgctgctca tgtggtgggt agcactcaag cccctccgtg gccatggcgg aattggcggc
      781 gcgctgttcg tgatactcgg caccatggcg cagagcggtg cgcttggcgc gattctgaca
      841 ttttccggca caccctggta tcacgcgcag agcgccggcg ccgcactgtg gcatctgaca
      901 gcgctcgaag atcagcagct ggcaggactg atcatgtgga ttccagccgg gttcgtgtat
      961 ctgatcgcac tgctcgctgt gttgcgccga gtgttcgatg tgccggaggc gtcaaagctc
     1021 gccagcggtg tcgcggccgc gatggcgctc atcgtaactg cttcgatctc agcttcgatc
     1081 accggctgtt cgcgcgcgcc ggccaatcgc gaggtcgccg gcggggatgc gcatcgcggg
     1141 gccctggcca tccagcatta tggctgcggc tcctgccacg cgattcccgg tatccctctg
     1201 gcaaccggcg cggtcggccc gccgcttgcc ggaatcgcgg accgtggcat gatcgccgga
     1261 atagtcccga atacgcccga tgagatggtt cgctggatcg tcatgccgca atcgatgtcg
     1321 ccaggcaacg cgatgcccaa tctcggggta tcagacgggc aggcgcgcga catcgcggct
     1381 tacctctaca cgttacatta gaaaggcttg acgaacccca ttgacccacg acggctagcc
     1441 ctcggcgcag cccaaaaaat tctattcgac ggacgcgacc ccgagacgat cctcgaccgg
     1501 atcgccagca tgggaaacga gccgtcccaa ccttcctatc gccccatgtc acgtccccgc
     1561 gacagaattc ttgccaacct cgacgagatg taccgcgagg cattcgagcg cgccaaggcc
     1621 actggcgacc agtcgcagat ggccaccctc gatttcgcgt accgcagaga gcagctctat
     1681 ttcgagatcc tgctcgacgt gcgcgatgca atggagcgca gatagggtct gacgtgtggg
     1741 ggcggagatg atccactctc cgctggtccc atggatcgcc ttcaacgcgg tcgtcctgat
     1801 cgcgctcgcg atcgacctcg ggctgttcag caccagtaag aagctttcgg taaaggaagc
     1861 tgcgattcga agcgccgtgt gggtcgcact ggcgcttctg ttcgccgccg gcgtcttcta
     1921 cttccagggc catctcgcgg gagtcgagtt catcacgggc tatctcgtgg aatactcgct
     1981 ctcggtcgac aacatatttg tgatggtatt gatcttctcc tatttcaaca tcaaggagga
     2041 gtatcagcat cgcgtgctgt tctggggcat actcggcgcg ctcgtcatga gggggctcat
     2101 gatcgccgcc ggtgcagctc tgttcaacag gtttggttgg atcacatatg tgttcggcct
     2161 gttcctcatc atcaccggga tccggatggg gatgggcggc gagaagcacg tcgatcctgg
     2221 cgccaatccg gtactcaggc tggttcgccg cctcatcccg gtttacaacg agtacgaggg
     2281 cgagcatttc ttcgtccagg taagcgacga gaaaagcggt gcgagacgca gaatggcgac
     2341 gccgttgttc gtcgtgctcg ttctgatcga gacgatggat ctggttttcg cggtcgacag
     2401 cataccagcg gttttcgcgg tgacgcgcgt gccgtttctg gtttacacgt ccaatgttgc
     2461 ggcgatactc ggattgcggt cgctgtactt ccttctgtcc ggcgtcgtca gtaagctgcg
     2521 ctatctcacc attggtctcg cgttcatact cgtattcgtc gggctcaaga tgctgactgc
     2581 cgcctggtac gagatgccga ccgttgcgtc gttgggcgtg atagtcctca tcctggcgac
     2641 cgccgccgca gcttccatat acgtggaccg aaaggaatcc gtgtgaccgg caccgtgggc
     2701 acggggctgt cggtcgtcgt gacgaatgcc cgtgtgcgta ccggtaatcc cgcgcggcca
     2761 tgggcgacgg cgctcggcat ccgcgctgga aagcttgcag ttgtggggac agcggcggag
     2821 attctcaaga tgacggacgc cgatacgagg gtgatcgacg cagccggaca gctcctgacg
     2881 cttccaaccg gaacgtcggt tggaagtcgc gtgacactga ccgttgaatc tgacggccgg
     2941 ttgatggttc actcatccga ggaatgacca tgactggctt cggttttctc gtcctcgccg
     3001 cgccgatatt gtttgtcggt gctgctgcgc cacgtcccgt tactcaccgt gctcctggcc
     3061 tcagctatga tttcgttctg cgtctgagcc gaactacaca ggatggtaaa atcgacagag
     3121 gatacggagt gaggggacat gcgtcggtac ttggtgacca tgtgcgcgta gactttgacg
     3181 agcatgccgc acccccggga atgaccggat cgtactttct ctcgaacgac gcaggcgcgc
     3241 atgccatcat cgtggccgcg gacaagcacc agacgataga aatgtcgatg cccgctctgg
     3301 tgaagaagtt cagcaactca tccggcaatt ttggcggcct gctcaaccag gccaccgatg
     3361 ttaacgtcga tgtgcaggac ctgggtgcgg gtcccgatat gtttggccaa cccaccaaac
     3421 acgatcagct cgtcgaagtg aaaactatca acggcaatgt ccgggacgcc gcgcagcacg
     3481 agcgggattc cgtgatcgtc gacctgtttt acgcaccggg tctgcagaat ctcatcaacc
     3541 cgttcgtttc ggagccgccg ttcgcgggtc gaatggatgg cctcggtcct gaagatatgc
     3601 agcggtacct cgcagcgcgc gcgaagcttt atccgggtct cgcaccgttg cgtgcggtca
     3661 cccgggaaac gactaccgat gcaaatggaa agtcggtgaa gttcgtttta actgtcatga
     3721 tcacgcgaat ggaatcaacc gatgttgatc aatcgatctt cgagatcccc gaagattact
     3781 cgaagacaac gctgcagggg ccgcaataac cgtggcgccc aagtctcatc cgctggatca
     3841 gatactcggc acacacgcag cagtacgcgt gctgcgcgtg ctcgcgcccg gcggcgagca
     3901 cgcgccaccg cgcatcgcgc gcgaaacgaa gatcagccgg cccgcggtgc gcgaggcgat
     3961 cattcgcctc gagaaggaag gcgtcgtcga gcgcgtcggc gatggccgga acgtgttgta
     4021 cagaatctca tcgaaccacc cactggcaaa acgaatcgtg aagcttttca agaccgaggc
     4081 gaagcgtgga acgctcgccg gattgttgtt gctctgcgcg tcatcgttgt tcgcacaggg
     4141 aactgtgccg ccgccaaagc ccgccgatct catagtgacc ggcggacaca tctacacggt
     4201 tgacgacacg cgccccgcag cacaggcctt cgccgtgcgc gatggtgtgt tcgcattcgt
     4261 cggatcgacg agcgaggcga tgacgctcaa gggtccaaac acacgcgtcg tcgatctgca
     4321 cggtgcgacg gtggttccag gcctcgcgga tgcgcacggc catctcaccg agctcggcga
     4381 aacgctgcac gaagccgatc ttgccggcag tctgtcatac gacgaagtga tcgaccgaac
     4441 gaagaagcac gccgccgctg tccccaaggg tgagtggata atgggacacg gttgggatca
     4501 gaatcggtgg gcgtcgaaac agtttccgac gagcgatgcg ctgacgcgcg cgttccccga
     4561 caatccggtt gtgctcgagc gcatcgacgg gcatgcgctg ctcgcaaatg cgcgcgcgat
     4621 gcaggcggcg aagatcactg ccgccacgaa ggacccggcc ggcggccgca tcgttcgcga
     4681 tacaaaaggt aatccaaccg gtgtattcgt cgacaatgca caggacctga tcggccgagc
     4741 tgttccgccg ccgacagatg cgcagctgga gcaggcaatc tccgcagcga ttgccgacgt
     4801 gcatcgctgg ggtctcgtct ccattcacga cccgggcgag ccgcgcagaa tcatcgacgt
     4861 catggagtcc atggcgaaga agggcagctt cgatctgcgt ggctacatac tcatagccga
     4921 cgacagcgcc gcgatcgcgc actactactc catcggtccg cgcagcgagt tgtacggcgg
     4981 tcatctctgg gtgcgctcga tcaagctcta cgcagacggc gcactcggct cccgtggcgc
     5041 agcgttgctg tcaccgtatt ccgacgaccc cggaaacacg ggtctgctcg tctcgaccga
     5101 agcgcatctg caaagtgtcg cgacatctgc gctacaacac ggttttcagg ttgccacgca
     5161 tgcgatcggc gatcgcggca accgaaacgc actcgacgcg tacgagggcg cactcaaggc
     5221 agtgcctact gccaatcatc gctttcgaat cgagcacgcg cagatcctcg atcccgccga
     5281 catcccccgc ttcgcgcagc tcggtgtgat tccgagcatg caggcgagtc accagaccag
     5341 cgacatgcgc tgggccgagg acagactggg tccgtcgcgc attcgtggcg cgtacgcgtg
     5401 gcgctcgttg ctcaacacgg gcgtcatcat tccgaacggc accgatttcc cggtcgagaa
     5461 cgtcaatcca ctcattacgt ttcacagctc aattacacgc gccgattcca ccggctggcc
     5521 cgacggtggc tggtatcccg agcagaagat gacgcgcgat gaggcgctca agtcgatgac
     5581 gatctgggcc gcgtatgcag gattccagga gcacgtgatg ggctccatca cgccgggcaa
     5641 gtacgcggac ttcaccgtgc tcgatcagga catcatgacg ataccagcga gcgacatcct
     5701 caagaccagt gtcgtctcga cgtacatcgg cggcaagagt gtctacgagc gcaaataacg
     5761 catgtactcg acctgcctct tctgccatca cgacctcggc gcgaacgaag tagtcgagca
     5821 ttttcccatc gggcggcgtc tcgcgttcga tggggagaag ggcaggttgt gggtggtgtg
     5881 tcgcgcatgt gagcgatgga acctcacgcc gatcgaagag cgatgggaag cgatcgagga
     5941 gtgcgagcga ttgtttcgcg acacgaagct gcgcatgtcg acggagcaca tcgggctcgc
     6001 gcgcgtgagc gaaggactcg agctcgtgcg cgtcggcgat ccgcaacgtc ccgagatggc
     6061 tgcgtggaga tacggagatc agttcgggaa gagacgacaa cgctattaca tgatcgttgg
     6121 cggaggcgcg gtagcggccg cggcgctttt ctcgggatac gcggtgctcg gtctttatgt
     6181 gggtggcggc gttccattgc tgaacattgc cgcgtcgggg ataggtcaag ctcgtaatcg
     6241 ccgcattgta gcaagagttc caacgcccga tggcgtcgtc aacgtc
//
LOCUS       DATIMD010000409         5336 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3342576, whole genome shotgun sequence.
ACCESSION   DATIMD010000409 DATIMD010000000
VERSION     DATIMD010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5336
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3342576"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1728)
                     /locus_tag="VLI40_09045"
     CDS             complement(<1..1728)
                     /locus_tag="VLI40_09045"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HSU97365.1"
                     /translation="MRYTIRTLAALAIAAPAGLVCQAPASTPATQFDFSIRNIMRGPE
                     LYGTAPTDVSWSADSRWIYFNWVAPGSSWRTQPAAYRVRAVTGAKPEKLTLAQRDSAG
                     PYATHAVVSADRHYGAIEFGGDIYLMDYRTHTLRRLTDTPARESNPILSSDSKRMYFV
                     RDDNAFSIDLASGLTTQLTDLKTGTAPKDTTAPRTPQRARLAQQQRDLFNVIRDQIAD
                     DSIVKAERHSVDSLRNPETVYVGNDRSIQSLTVAPDGRGVLVMLRTPAKSRPVEIPYW
                     VTESGYTEPRKGRTVVGDGQTRVELMYLSLPSAKLSRLHLFANDSLASFVVINGWNAS
                     GTDVLFSAFRPDNKQRVRYTLSSSDTTLHAVETLDDTAWVGGPCSACAGWYDGGRRVW
                     YVSEATGYAHLYTAAARGGDVHQLTTGKWEVRDVSLSPDGRTFDLITNDPSPFDEHLF
                     SLPITGGALTRVTTMPGRHAAVVSPDRKLVADVYSYVNRPPDLFLMSNRPGAAEQQLT
                     VSPNAEFLSQKWFAPPIVMVPASDGIKVPAHLYRPEDFGARPNGAAVIFVHGAGYLHN
                     VGNFWSEYPR"
     gene            1794..2438
                     /locus_tag="VLI40_09050"
     CDS             1794..2438
                     /locus_tag="VLI40_09050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97366.1"
                     /translation="MKLGPFTLVALLCASPLAAQATPEATAPPQQRPLERLAAEQMLV
                     LPVQYLTFADSLGWSQQAPPSRTYLHTVDDEIAFALTQRGLKHHWTMAPDLIRSVARN
                     QGYAPDPTSLAAEEVRAGQKAAEWQLREPLASQLRALIALTDARYVLFPVEMRFVGSK
                     GAGHAMLHLVIIDARRSQVQWSGDLAGAEMTKFSPAIAADIASRLADLIASPVN"
     gene            2454..3272
                     /locus_tag="VLI40_09055"
     CDS             2454..3272
                     /locus_tag="VLI40_09055"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSU97367.1"
                     /translation="MTTILHVSDLHFGRPAVLAQIDAIERAISERSFDAVAASGDFSQ
                     RARAGEFQRAAVFLRDARRYCPVITVPGNHDVAWWYAPVGIGDETKVYANYREYISDE
                     LEPTLEVEGAYFVGLNTAHGVTARTLTLNPRDISIIGDLTPSQIDRARARFEQAPVGD
                     AKVVVMHHNPVAGELSQRYGLKHTPRILNTFAEMGVELVLCGHDHQEAVNFIEHPRKG
                     VVVSTAGTVSNRSRGGRPSSYNVITIEPQSITVVTFIWDGEGEFIPGPRRCFER"
     gene            3269..3829
                     /locus_tag="VLI40_09060"
     CDS             3269..3829
                     /locus_tag="VLI40_09060"
                     /inference="COORDINATES: protein motif:HMM:NF021759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT-like domain-containing protein"
                     /protein_id="HSU97368.1"
                     /translation="MSGRLKLERLRQLWMQCELFSTPVPEQPRMEIARPAPPRPDVVR
                     IHRKRRSSRSRADDAAIIGQLQVEHAGYNATLFDGELGRVKIRLSRRMKNRLGHYMVA
                     GGGQPAEIAMSLRHIERDSWDDVLHTLVHEMVHQWQDENGMALDHGQAFREKAIEVGI
                     SARATRPAGGGTQPRLAARTGKRRKT"
     gene            3885..5072
                     /locus_tag="VLI40_09065"
     CDS             3885..5072
                     /locus_tag="VLI40_09065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSU97369.1"
                     /translation="MPTNPLDLCDIDSFLSEDERAVRDSVRAFVNDRVLPIIGDAYVE
                     GRFPKELIAGLAELGVLGANLPEEYGCAGLNNVAYGLIMQELERGDSGVRSFASVQGA
                     LVMYPVFTFGSDEQKARLLPSMAKGETIGCFGLTEPDYGSNPAGMITRARKQTDGSWI
                     INGAKMWITNGSTAHVAIIWAKTDDGDDDGHSIRGFVVPTSTPGFSAKNQKGKLSLRA
                     SDTSELALQDVHVPADALLPKSGGLKSPLMCLTQARYGIAWGAIGAAMYCFEEALSYA
                     GNRVMFGRPIGGFQLQQARLAEMVSEIAKGRLLALHLGRLKDAGRLTPQQVSLAKRNN
                     VNVACDIAREARRLLGGNGILAEYGAMRHMENLESVYTYEGTHDIHTLIVGQAVTGLS
                     AFE"
BASE COUNT         1036 a         1462 c         1811 g         1027 t
ORIGIN      
        1 gcgcggatat tccgaccaga aattaccgac gttgtggaga tagccggcgc cgtgtacaaa
       61 tatcacagcc gcaccgttgg gtcgcgcccc gaagtcttcc ggtcgataga ggtgcgcggg
      121 gaccttgatt ccatcggacg caggaaccat cacgatcggt ggcgcgaacc acttctgcga
      181 gagaaattcg gcgttgggcg aaacggtcag ctgctgctcg gctgcaccag gccggttcga
      241 catcaggaac aggtcgggcg gccggttcac gtacgaataa acgtcggcga cgagtttgcg
      301 atccggtgat acgacagcgg cgtgacgtcc tggcatggtt gtcacgcggg tgagagcgcc
      361 gccagtaatc ggaagtgaga acagatgctc gtcgaacggt gacggatcat ttgtgatcag
      421 atcgaaagtc ctgccgtcgg gagacagcga gacatcgcgg acttcccact tgccggtggt
      481 gagctgatgc acatcaccgc cccgtgcggc ggcagtgtaa aggtgtgcat aaccggtcgc
      541 ttcggagaca taccacacgc gccggccgcc atcgtaccag ccggcgcagg cgctgcaggg
      601 gccgccgacc caggcagtgt catcgagagt ttctacggcg tgtaaagtgg tatcagagga
      661 cgagagggtg tagcgaacgc gttgtttgtt gtcaggtctg aacgcggaaa acaggacgtc
      721 ggttccgctc gcattccatc cattgatgac gacgaagctc gcgagcgaat cattggcgaa
      781 gagatgcagc ctgctgagtt ttgcgctggg tagcgagaga tacatcagct caacgcgcgt
      841 ctgaccatcg cccacgacgg tgcgtccctt gcgcggctcg gtgtaaccgc tctctgtaac
      901 ccagtatgga atctcgaccg gtctgctctt cgcaggggtg cgcagcatca caagcacgcc
      961 gcgtccatcg ggtgcgacag tgagcgactg gattgagcgg tcgtttccga cgtacaccgt
     1021 ttccggattt ctcaacgaat cgacactgtg gcgctcggcc ttcacgatgc tgtcgtcggc
     1081 gatctggtcg cgaattacgt tgaacagatc ccgctgttgc tgcgcgagcc gtgcacgctg
     1141 cggcgttctg ggcgccgtgg tgtccttggg agccgtgccc gttttgaggt cagtcagttg
     1201 cgtggtgagg cccgacgcga gatcgatcga gaatgcgttg tcatcgcgca cgaagtacat
     1261 gcgctttgaa tcgctgctca gaattggatt ggactctcgc gctggtgtat ctgtcagtcg
     1321 tcgcagcgtg tgggtgcgat agtccatgag gtagatgtcg ccaccgaatt caatagcgcc
     1381 gtagtgccga tcggcagaca cgaccgcgtg cgttgcgtag gggccggcgg aatcgcgttg
     1441 cgcgagcgtc aatttctccg gttttgcacc ggtgacggcc cgcacccgat acgcagccgg
     1501 ttgagtgcgc caactgctgc caggtgcgac ccagttgaaa tagatccagc ggctatcggc
     1561 ggaccaactg acgtcagtgg gcgcggtgcc gtacagctcg ggaccgcgca tgatgttcct
     1621 gatcgaaaaa tcgaactgcg tcgcgggagt cgacgccggc gcctggcaga caagtccggc
     1681 gggagcggcg attgcgaggg cggcgagcgt tcggatggtg tagcgcattt attgggctga
     1741 tcgggcgtga attggaggcg cggtgaaaat gatctcaggt taacttttct gcaatgaagc
     1801 tcggtccctt tacgctcgtg gcgctgctat gcgcgtcgcc gttagccgct caggcgacgc
     1861 cggaagcgac ggcgccgcca cagcaacgtc cgttggaacg gctggctgcc gagcagatgc
     1921 tggtgctgcc ggtgcagtac ctgacgttcg cagactcgct gggctggtct cagcaggcac
     1981 caccttcacg gacgtacctg cacacggtgg atgatgagat tgcgttcgcg ctcacgcagc
     2041 gagggctcaa gcatcactgg acgatggcgc cggaccttat ccgatcggtt gcacgaaacc
     2101 aggggtacgc tccggatccg acgtcgctag cggccgagga ggtacgcgcg ggtcagaagg
     2161 cagccgagtg gcagctgcgt gagccgttgg cgtcgcagct gcgagcgctg atcgcattga
     2221 cggacgctcg ttatgtgctg tttccggtcg agatgcggtt cgtgggatcc aagggcgccg
     2281 gacacgcaat gctgcacctg gtgatcatcg atgcgcgcag gtcgcaggtg caatggtccg
     2341 gtgatcttgc tggcgcggag atgacgaagt tctcgccggc gatcgccgcc gacatcgcat
     2401 cgcgcctggc agatctgatc gcgtcgcctg tcaattaggt tggcgggtct cgaatgacga
     2461 ccattctgca cgtttcggat ctgcactttg gccgaccggc ggttctggcg cagatcgatg
     2521 cgatcgagcg agcgatttcc gaacgatcgt tcgacgctgt tgcggcttcc ggtgactttt
     2581 cgcagcgggc gcgtgcgggc gaatttcaac gcgcggcggt gtttctgcgc gatgcgcggc
     2641 ggtactgccc tgtaattacc gtcccgggga accacgatgt cgcgtggtgg tatgcaccgg
     2701 tcgggatcgg cgacgaaaca aaagtttatg cgaattaccg ggagtacatc tcggacgagc
     2761 tcgagcccac cctcgaggtc gagggggcgt atttcgttgg actgaatact gcgcacggag
     2821 tgacggcgcg caccctgact ctcaacccgc gtgacatctc gataatcggc gatcttacac
     2881 cgtcccagat cgacagagcg cgggccaggt tcgagcaggc gcccgttggc gacgcaaagg
     2941 tcgtagtcat gcatcacaac ccggtcgcgg gcgagctgtc gcaacggtac gggctcaagc
     3001 acacgccgcg tattttgaac acgttcgcgg agatgggcgt ggagctggtt ctgtgcggcc
     3061 acgaccatca ggaagcagtc aatttcatcg agcatccacg taagggcgtg gtcgtctcga
     3121 ctgcggggac ggtgtcgaac cgttcgcgtg gcgggcgtcc ctcgtcgtat aacgtcatca
     3181 ctatagaacc tcaaagcatc acggttgtga cattcatatg ggacggagaa ggggagttca
     3241 ttccaggacc gcggcgctgc ttcgaacgtt gagcggcaga ctgaagctgg agcggttgcg
     3301 gcagttgtgg atgcagtgcg agttgttcag cacgcccgta ccggagcagc cgcgcatgga
     3361 gatcgcgcgg ccggcgccac cgcgtccgga tgtggtacgg atccaccgta agcggcggtc
     3421 gagccggtcg cgcgcggacg acgcggcgat catcgggcag cttcaggtgg agcatgcggg
     3481 gtacaacgca acgctgttcg acggggagct tggccgagtg aagattcgcc tgtcgcggcg
     3541 aatgaagaac cgtttgggcc actatatggt tgcgggcggg gggcagcccg ccgagatcgc
     3601 catgtcgctg cgccatatcg agcgggactc ctgggatgac gttcttcaca cgctggtgca
     3661 cgagatggtt catcagtggc aggacgagaa cggaatggca ctggatcacg ggcaggcgtt
     3721 ccgtgagaag gcgatcgaag tcgggatcag tgcacgggca actcgtccgg cgggtggcgg
     3781 cacgcagccg cgcctggcgg cacgaaccgg aaagcggcgc aagacctagc gcggcacgga
     3841 gcaccgcggg tacgagaacg ggtgctgtcg cggtatcttt caggatgcct acgaacccac
     3901 tcgatctgtg cgacatcgat tcatttctat ccgaagacga acgcgcggtc cgtgactcgg
     3961 tccgcgcgtt cgtaaatgat agagttcttc ccatcatcgg cgacgcgtac gtagaaggcc
     4021 gctttccgaa ggagctgatc gccggactgg cggagcttgg cgtgctcggc gcgaatctgc
     4081 cggaagagta cggctgcgcg ggcctgaaca acgtcgcgta cggtctcata atgcaggaac
     4141 tcgagcgcgg tgattccggt gtgcgctcgt tcgcgtcggt gcagggtgca ctcgtgatgt
     4201 atccggtgtt caccttcggg tcagacgagc agaaggcgag actgctgcct tcgatggcaa
     4261 agggcgagac gatcggctgc ttcgggctga cggagccgga ttacggatcg aatccagcgg
     4321 gcatgataac gcgtgcgcgt aaacagaccg acggaagctg gatcatcaac ggcgccaaga
     4381 tgtggatcac gaatggatcc acggcgcacg tcgcgatcat ctgggccaag accgacgatg
     4441 gcgacgacga cggacattca atccggggat tcgtagtacc gacctcgaca ccgggcttca
     4501 gcgcgaagaa tcagaagggg aaactgtcgc tgcgcgcatc ggacacgtcg gagctggcgc
     4561 tgcaggacgt gcacgtgccg gcggacgcgc tgcttccaaa atccggtgga ctgaagagcc
     4621 cgctcatgtg cctgacgcag gcgcgctatg gaattgcgtg gggcgcgatc ggcgcggcga
     4681 tgtactgctt tgaagaggcg ctgtcgtatg ccgggaacag agtgatgttc ggtcgtccga
     4741 taggcggctt ccagttgcag caggcgcgac ttgcggaaat ggtaagcgag attgccaagg
     4801 ggagattgct cgcgctgcat cttgggcgac tgaaggatgc agggcgtctc acgccacaac
     4861 aggtttcact tgcgaaacgc aacaacgtga acgttgcgtg cgacatagcg cgcgaggcgc
     4921 ggcggttgct gggtggaaac ggaattctcg cggagtacgg cgcgatgcgt cacatggaga
     4981 atctggagag cgtgtacacg tatgaaggaa cgcacgacat acacacgttg atcgttggac
     5041 aggctgtcac ggggctttca gcattcgagt agcgatgcag taagcgcacg cggcggcgca
     5101 ctaagaatcc attaaccccg cagaaaggcc cttttacgtg agtaaaaggg cctttcgccg
     5161 tagatatgcg cactggcgga gaacgagagc gcggtgcatt tttgcgaaat tcaggggcgt
     5221 gtttgcgcgc gcgtgctggt gttacgcgtt gcgcagccaa cttaccgatg ctggaggttc
     5281 aatgggattg cgtttcgatg cgagcgacgt gacttcatgg tcatgtcgaa ccgcga
//
LOCUS       DATIMD010000410         1900 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4209858, whole genome shotgun sequence.
ACCESSION   DATIMD010000410 DATIMD010000000
VERSION     DATIMD010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1900
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4209858"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..273)
                     /locus_tag="VLI40_09070"
                     /pseudo
     CDS             complement(58..273)
                     /locus_tag="VLI40_09070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611516.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
     gene            complement(315..1555)
                     /locus_tag="VLI40_09075"
     CDS             complement(join(315..1249,1249..1555))
                     /locus_tag="VLI40_09075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611469.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HSU97370.1"
                     /translation="MENESKVRKPTGTRYSDEVRERAVRMVFEHQHEYQTPGAAIRSI
                     ASKMGMSRETLRNWIVQAERDRGQRAGATTSELARLKELECENRELRTANEILRKASA
                     LFRTGGARPPIEAMIAFIDEHRDVYGIEPICRLLPIAPSTYYRHAGRRSDPEQWPARA
                     RRDAELKALIRAVWDENFGVYGVRKVWRQLLRDGVKLARCTVARLMKVMGLEGVRRGR
                     RIKTTQRDDALPCPLDRVKRQFRADRPNALWVADFTYCWTWSGFVYVAFVTDVFARRI
                     VGWRVSASMRTDFVLDALNQALHDRQPPPGLIHHSDHGSQYLSIRYTERLVDVGVEPS
                     VGTVGDSYDNALAETINGLYKAEVVHRRSWRTLQDVELATLEWVHWYNRHRLLGPLGY
                     VSPAEAEEAYNRNLVLSARAV"
     misc_feature    complement(1137..1253)
                     /locus_tag="VLI40_09075"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01497"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="AL1L pseudoknot; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01497"
     gene            complement(1615..1845)
                     /locus_tag="VLI40_09080"
                     /pseudo
     CDS             complement(1615..1845)
                     /locus_tag="VLI40_09080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611251.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
BASE COUNT          371 a          596 c          545 g          388 t
ORIGIN      
        1 tgcgaatatc cggcaaccat cgtcctcaag agtgccgagt tcagcacagt cttggggtta
       61 tgtggccagt cggaacatct cgaaggtgtc agggtcctgc ctttcggcga tgaatttcgc
      121 gaagaaattg gttttggcgc tattcacgag aaattcgggc aggcattgtc gtagtgcact
      181 ggcgacgacc aactccgatg gagggatgcc gggacggatg gtgcgcagcc aggatccaaa
      241 ggaactccag acgagtgaag ggaataccgc tgcctgaacc gccccggctt tgtcggagac
      301 cgccgagttt ggcgctacac cgcgcgagcg gagagcacca gattccgatt gtaagcttcc
      361 tctgcctccg ccggcgacac gtacccgagc gggccgagca accgatggcg gttgtaccag
      421 tgcacccatt cgagcgtggc gagttcgaca tcttggagcg tacgccatga acgccgatgc
      481 acaacttcgg ccttatacaa gccgttgatc gtttcggcca gagcgttgtc gtaggagtcg
      541 ccgacggttc cgactgatgg ctcaacgcca acatccacca aacgttcggt gtaccgaatg
      601 ctgagatatt gcgacccgtg atcggaatga tgaatgagcc cgggcggtgg ctggcgatcg
      661 tgtaacgcct ggttcagcgc gtccagcacg aagtcagtcc tcatcgatgc cgacacgcgc
      721 caaccgacga tacggcgcgc aaacacatcg gtcacgaagg ccacgtagac aaagccggac
      781 catgtccagc aataggtgaa atccgcgacc cacagcgcgt taggtcgatc ggcccggaac
      841 tgacgtttga cccggtccag cgggcacggc aatgcatcgt cgcgctgcgt cgtcttgatc
      901 cgacgcccac gccgcacacc ttcgaggccc atcaccttca tcaggcgcgc aaccgtgcag
      961 cgcgcgagct tcacgccatc gcgcagcaac tggcgccaga ccttgcgcac accatacacg
     1021 ccaaagttct cgtcccagac cgcccggatg agggccttca gttctgcatc gcgacgcgct
     1081 cgcgctggcc attgctccgg atcgctgcgc cgcccggcgt gccggtaata cgtcgacggc
     1141 gcgatcggca gcaggcggca gatcggctcg ataccgtaga cgtcgcgatg ctcgtcgatg
     1201 aacgcgatca tggcttcgat cggcggtcga gctccgcctg tgcgaaatat gcggaggcct
     1261 tgcgcaggat ctcgttggcc gtgcgcaatt cacgattctc gcactctagt tccttcaaac
     1321 gcgccagttc cgaagttgtc gcgcccgctc gttgcccacg gtcgcgctca gcctgaacga
     1381 tccagttgcg aagcgtctcg cgcgacatcc ccatcttcga ggcgatcgag cggatcgcgg
     1441 cccccggcgt ttggtattcg tgctggtgct caaacaccat ccgcaccgcc cgctcccgca
     1501 cttcatccga atatcgcgtc ccggtgggct tccttacctt gctttcgttt tccatacttc
     1561 aaatctccca ttacagccaa gatccgaagt ctcctacatt cccggggcgg ttcagactgc
     1621 cttctgacag gaagcgtcct cttccagcgc ctgacgcatg aacatcgaca gcgtcaccgt
     1681 cggcggatac agtcgttccc gatgctcagg caaatacgct tccgttatat ctagcagctg
     1741 cgggctcgtc agtatgttga agtagtctac ggcctgtgcc cggcgcgcac ggctttgaac
     1801 ggtgcgtcgt gtttgcctat gctgactgcg tgcattacga tccatggtgg ctgatctttg
     1861 gagtgagacg ctgtttgctt ggtaacaacc atcgtatcaa
//
LOCUS       DATIMD010000411         3159 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3918887, whole genome shotgun sequence.
ACCESSION   DATIMD010000411 DATIMD010000000
VERSION     DATIMD010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3159
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3918887"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VLI40_09085"
     CDS             <1..220
                     /locus_tag="VLI40_09085"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSU97371.1"
                     /translation="AESDERRHLVQRALQDLPEDQRRALDLAYFRGFSQSEIAEMLGE
                     PLGTIKTRMRLGMQKLRNSLMGLRESRL"
     gene            217..1293
                     /locus_tag="VLI40_09090"
     CDS             217..1293
                     /locus_tag="VLI40_09090"
                     /inference="COORDINATES: protein motif:HMM:NF021604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HSU97372.1"
                     /translation="MSNDNERNEEDARDHRAREDGAHDRQNTGQPIAPTTVNEPESAF
                     DVAGAALGALTPGEEADVYTAASVDSAVSAELAAMEAVVAELARLAPVQQMNRGRSAG
                     IRSRLVARAAATNVGRQASSTGAAAESEHAAARPIRPTRSTQPSAPRHHPSPSASHGN
                     ASARHTPLHVVPFEPRRRPPIGRMFAGVALAAALVIAAFGVYSWRERSRIGGASVASA
                     VHDSSLEAQVAQLRVSVAQKDSLISALTGMHTRVIDLMSYADAAPMARMFWDQKKQMF
                     IMYASNVKPPAQGKVYQVWLIARGTTTPVSVGTFMPDSTGSAVVSARHPMEPGTLRRV
                     AVTEEPDGGMPAPTGPVMFAGVGK"
     gene            1398..1709
                     /locus_tag="VLI40_09095"
     CDS             1398..1709
                     /locus_tag="VLI40_09095"
                     /inference="COORDINATES: protein motif:HMM:NF016330.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIM zinc finger family protein"
                     /protein_id="HSU97373.1"
                     /translation="MEQSQIALLPALDFESPGADVARLERALGLRAEHVGHGRYRIVG
                     GQSDHWVDLYSAAHPRCDCGDYLWRDTVCKHILAALMREGNEDVIRAVGGLFAALKTA
                     A"
     gene            1828..3069
                     /locus_tag="VLI40_09100"
     CDS             1828..3069
                     /locus_tag="VLI40_09100"
                     /inference="COORDINATES: protein motif:HMM:NF020252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HSU97374.1"
                     /translation="MIDVFVARQPIFDRHDRLSGYELLYRNTALSTVADGAAADAMCT
                     DTVIHSFLDIGLDDLTDGHRAFVNCTREFLLDGQVELLPAQKVVIEVLETVGNDAAVV
                     TACRRLTQNGYQLALDDYVDDPSFDALLHTVGIVKLDVLHRKPGELATLMRRLRQFNV
                     QILAERVETMSMHQECMQLGFDLFQGYFYRRPELVTRKEIEVGQTAMLRLLNMLRDHE
                     TPDAAIESGFRSDPTLTYKLLRIVNSASVGGRGIDSIGYAIRMVGRQMLYRWLALLMV
                     SSMVTGSDVTDQLVYAALLRARLCELIAESSPQVRHPQALFMTGLFSMLDVLLRMPMR
                     DVLARVSVSDEIRQAVMEGTGPYAEPLLLADAYQRGEWDQVDVLASALGVLPMQMAWL
                     YTKSLTWVNEQLTGVKDAIAA"
BASE COUNT          580 a          953 c         1011 g          615 t
ORIGIN      
        1 tgccgaaagc gatgagcgca gacatctggt acaacgggcg ctgcaggacc ttccggaaga
       61 tcagcgtcgt gcacttgatc tggcatactt ccgcggcttc agccaatccg aaatcgctga
      121 aatgctcggc gagccgctcg gcaccatcaa aacaagaatg cggctcggca tgcagaaact
      181 gcggaatagt ttgatgggcc tgcgagagag cagactatga gcaacgacaa cgagcggaac
      241 gaagaagacg cgcgtgatca ccgcgcgcgc gaggacggcg cgcacgaccg gcagaataca
      301 gggcaaccca tcgctccgac tacggtgaac gagccggagt ctgccttcga cgtggccggc
      361 gcggcacttg gtgcgctcac gcctggcgag gaggcggatg tgtataccgc ggcttccgta
      421 gattccgccg tatccgctga gcttgccgcc atggaagccg tggtcgccga gctcgctcgc
      481 ctcgcaccgg tgcagcagat gaatcgcggt cgctcggcgg gaattcgctc caggctcgtc
      541 gctcgcgcgg ccgcaaccaa tgtaggtcgt caggcatcgt cgacaggcgc tgcagcagaa
      601 agtgagcacg cggccgccag gcccatcagg ccaacgcgat cgacccagcc ctcggctccg
      661 cgtcaccatc catccccctc cgcatcgcac ggaaacgcat cggcgcgaca cactccgctc
      721 catgtcgttc cgttcgagcc gcgccgccgc ccgccgatcg ggcgaatgtt tgcgggcgtg
      781 gccctcgccg ccgccctcgt cattgcggcg ttcggtgttt acagttggcg cgaacggtcc
      841 cggatcggtg gtgccagcgt cgcaagcgcg gtacacgact cgagtctcga ggcgcaggtc
      901 gcgcagctac gagtctccgt cgcccagaag gacagtctca tttccgcgct gaccgggatg
      961 cacactcgcg tcatcgacct gatgagctac gcggacgccg cgcccatggc caggatgttc
     1021 tgggaccaga agaagcagat gttcataatg tacgcgtcca atgtgaagcc gcccgcccag
     1081 ggcaaggtgt accaggtctg gctcatcgca cgaggaacca ccacccccgt ttccgtcggc
     1141 accttcatgc ccgactcgac aggatcggcg gtggtgtccg ccaggcaccc tatggaacca
     1201 ggcacgttgc ggcgggtcgc cgtgaccgag gagcccgacg gcggcatgcc tgctccgacc
     1261 ggccccgtga tgttcgcggg cgtcggaaag taggcttttc gaacggtcgt tcgggcaccc
     1321 gttcggcgca acataatctg ttgttccggg tatcaatatt gttacgtaag tcattgatac
     1381 tacaggagtt agtagggatg gaacagagtc agattgcgtt gctgccggcg ctggatttcg
     1441 agtctccagg agctgatgtc gctcgtctgg agcgagcgct tggcctgcgc gcagaacatg
     1501 taggacacgg ccggtatcgc atcgtgggcg ggcagtcgga ccattgggta gacctctact
     1561 cggcggcgca tccgcgctgc gactgcggcg attacctgtg gcgggacacc gtctgcaagc
     1621 acatcctcgc cgctctcatg cgtgagggta atgaagatgt gatccgcgcg gttggcggcc
     1681 ttttcgccgc gttgaagacg gccgcgtaag cgggcgtctt cagtaccgcc gggcgtgcca
     1741 acggatgcag aatttgcgac tccgcccgcc cgggagccga taattagacg gaccaccagt
     1801 tatcggagcc ctaatcgttg gcacgccatg attgacgtat ttgttgcacg ccagccaatc
     1861 ttcgaccggc acgaccggct ttccggatac gagctgttgt atcggaacac ggcgctgtcc
     1921 acggttgcgg atggtgccgc cgcggacgcg atgtgcaccg atacggtgat tcactcgttc
     1981 ctcgatatcg gtctcgacga cctgactgac ggccatcgcg cgttcgtgaa ctgcacgcgg
     2041 gagtttctgc tggatggcca ggtcgagctg cttccggcgc agaaggtcgt gatcgaggta
     2101 ctcgagacag ttggcaacga cgccgcggtc gtcacggcct gccggcgtct cacgcagaat
     2161 ggatatcagc tcgcgctgga cgactatgtg gatgatccgt cgttcgacgc attgctgcac
     2221 acggttggca tcgtgaagct cgatgtgctt caccgaaagc cgggcgagct ggccacgttg
     2281 atgcggcgtc tgcggcagtt caacgtgcag atccttgcgg agcgcgtcga gacgatgagc
     2341 atgcaccagg agtgcatgca actcggcttc gacctgtttc agggatattt ctatcgacgt
     2401 cccgagcttg ttacgcgcaa ggagatcgag gtgggtcaga cggcgatgtt gcgtctgctc
     2461 aacatgctgc gcgatcacga gactccggat gcagctatcg agagcggctt tcgctccgat
     2521 ccaacgctca cctacaagct tctgcgtatc gtcaattccg cgtcggtcgg cggtcgcgga
     2581 atcgattcca tcggctatgc gattcgcatg gttggacgcc agatgctgta tcgctggctc
     2641 gcgcttctca tggtctcatc gatggtgaca ggcagcgacg tcaccgatca gctcgtatac
     2701 gccgcgttgc tgcgtgcacg actctgcgag ttgattgcgg aatcgagccc gcaggtacga
     2761 catccgcagg ctctgttcat gactggattg ttctcgatgc tcgacgttct tctgcgcatg
     2821 cccatgcgcg acgtgctcgc gcgcgtaagc gtgtcggatg agatacgcca ggctgtgatg
     2881 gagggaaccg ggccgtatgc ggagccgttg ctgctcgccg atgcgtacca gcgcggcgag
     2941 tgggatcagg tggacgtgct cgcatctgca ctcggggtgc tgccgatgca gatggcgtgg
     3001 ctgtacacca agtcactgac ctgggtcaac gagcagctta ccggagtgaa ggacgcaata
     3061 gcggcgtagc tgaaaatcgt ggcaggtagt cgtagcaggt agtcaaagat cggcgctgtc
     3121 gtcctcgcgc cgatctttgt gtctccggtc gccgcgtct
//
LOCUS       DATIMD010000412         3333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1905805, whole genome shotgun sequence.
ACCESSION   DATIMD010000412 DATIMD010000000
VERSION     DATIMD010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3333
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1905805"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..1384
                     /locus_tag="VLI40_09105"
     CDS             32..1384
                     /locus_tag="VLI40_09105"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="HSU97375.1"
                     /translation="MSNEILRAARSRVGRNALLNLAGLAVPLVVAAIVLPTLTHALGP
                     ARFGLLGVSWAFLEYLTLFDVGLGKATVRYVADSIARGTEDVSQITSVSLSVQLIIGC
                     CAAAVLSYFAGSLAQHVFRVDPELIGEASLLFVVVAINLPVVLALTTFRGVLEGAQHF
                     TLSNAIKIPASAGSIIIPAILARMGHSLPDMLMWVLAWRALASLVTLYAIRRVIPGFR
                     VEPPRDWRRLRSLISFGGWVAVSGVVSPMLVYFDRFALGARSGLSAVGYYTAPYEGIT
                     RLLMIPNSLISALFPLLTGLGVVAAAGRIDRLFASSMRALLIMMSIPAAIALFFAPVI
                     LNVWMGPDYAAQGAMALRILSVGVLINAVAHIPYTFLEAAGRPDVPAKFHMIELVIHV
                     PFAWYLVGRYGITGAAVAWTARVTLDTTLLLLAANRIVPVSLRRVFWSGRVAEMAVRA
                     "
     gene            1401..2216
                     /locus_tag="VLI40_09110"
     CDS             1401..2216
                     /locus_tag="VLI40_09110"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSU97376.1"
                     /translation="MPERPVTRVTASIVSTGEGERIRPCLESLVAQRFDGRLTVVVVD
                     NGVNDNTARVTHELFPDARILSRVTPFGFAENHNDALATADFDFGLVLNPDVILEPDC
                     IAEMIDAMRRHEDAGVIVPLLSFPSGAPQPSARRFPRLSGTILRRTPLRRLVGEQRVT
                     RTSHFLPPPTTDREIDWALGACLFVRNEAWDELGGFDPGYRPLYVEDVDLAWRMWQAG
                     WAVWQTPSARAMHEHQAATDKKFFDRRTLWHMHGMLRFVRKHPRILMPVANVR"
     gene            2206..>3333
                     /locus_tag="VLI40_09115"
     CDS             2206..>3333
                     /locus_tag="VLI40_09115"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSU97377.1"
                     /translation="MSGKPCTILFVHGADEWYGSDYVLYEAVRALKGTEFDAMVLVPD
                     DVTSELPAAMRLSGRLRALGVPVRSVPLTVLRRRYMTPNGIARLLGSGRSSLRAALDA
                     IGDRHIAMVHSHTATVLTGARVARALHVPHLWHVSEIVERPRAVRAWLSRKVVRSADR
                     VVTVSNAVRDHILETQPAAGSKVSVVYNCIDAARFTESSCTGRRRTGPDDRPLIVGMI
                     GRVGTWKGQELLIAAARTVCSVVPNARFVLAGGVLEGNLAALDNLRSLASAYGISDRV
                     TIQEYCTDTPALLRSFDVFVQPSLRPDPLPTTILEAMASGLPVVATDHGGAPEMVSNG
                     VNGLLSIPGDADAMARAIISLLHDPEARMNMGKAGYDRVLRD"
BASE COUNT          535 a          975 c         1098 g          725 t
ORIGIN      
        1 tggaagcagc ggatgatgta gtggctctgc cttgagcaac gaaatacttc gtgcggcgcg
       61 ctcgcgggtg gggcgcaatg cacttctcaa tcttgccgga ctcgcggtgc cgctggtcgt
      121 tgccgcgatc gtgttgccca cactcacgca cgcgcttggt ccggcccggt tcggactgct
      181 cggagtcagc tgggcctttt tagagtatct gacgctgttc gacgtcggcc tcggcaaggc
      241 gacagttcgc tacgtcgcgg actccatcgc gcgcggcacg gaggacgtgt cccagataac
      301 gtcggtgtcg ctttcggtcc agctcattat cggatgctgt gccgcggcgg tactcagcta
      361 cttcgccgga agtctcgcgc agcacgtatt tcgcgtcgac ccggagctta tcggcgaggc
      421 ttcgctgttg ttcgtggttg ttgcgatcaa ccttccggtc gtgttagcgc tgacgacgtt
      481 ccgcggcgtg ctcgagggcg cgcaacactt cactctcagc aacgcgatca agatccctgc
      541 atcggcgggg tctatcatca ttccggcgat tctggcgcgc atgggccact cgctgcccga
      601 catgctgatg tgggtgctgg catggcgcgc tctcgcatct cttgtgacac tgtacgcgat
      661 acgacgcgtg atccctggct ttcgcgtgga gccgccacgc gactggagaa ggctgcgcag
      721 tctcatcagc ttcggtggat gggtggcggt atcgggggtg gtgagtccga tgctggttta
      781 cttcgatcgc tttgcgcttg gcgcgcgctc ggggctatcg gcggtcggat attatacggc
      841 gccgtacgag gggataacac ggctcctcat gattccaaac agcttgatca gcgcgctctt
      901 tccgctgctc acggggctcg gcgtagtggc agcagcgggc cgcatcgaca ggctgttcgc
      961 gtcgtccatg cgtgcgttgt tgataatgat gagcattccg gcggcgatcg cgctcttctt
     1021 cgcgcctgtg atattgaacg tgtggatggg tccggactac gcggcgcagg gcgccatggc
     1081 attacgtatc ctctccgtcg gcgtgctcat caatgcggtg gcacacattc cgtatacgtt
     1141 tctggaagca gcagggcggc ccgatgtgcc ggccaagttt cacatgatcg agctggtgat
     1201 tcacgttccg tttgcatggt atctcgtggg acggtatggc atcaccggtg ccgccgtcgc
     1261 gtggaccgcg cgcgtcactc tcgacacgac gctgctgctc cttgctgcaa acagaatcgt
     1321 tcccgtgtca ttgcggcgcg tgttctggtc tgggcgagtt gcggagatgg cggtacgagc
     1381 atgacgatcg ccacgtctgc atgccggaac ggccagtgac gcgtgtaacg gcgtcgattg
     1441 tgtccacggg cgaaggcgag cgcatccgtc cgtgtctcga gtcgctcgtc gctcaacgat
     1501 tcgatggaag gctcacggtt gtcgtggtcg acaacggtgt gaacgacaac actgcaaggg
     1561 tgacgcatga gctatttccg gacgcgcgaa ttctcagccg ggtgactccg ttcgggttcg
     1621 cggagaacca caatgacgcg ctcgcgaccg ctgatttcga cttcggtctc gttctgaacc
     1681 cggacgtcat tctcgagcct gactgcatcg ccgagatgat cgatgcgatg cggcggcatg
     1741 aagacgcagg tgtgatcgtt cctctgttga gctttccgtc tggagcgccg caaccgtccg
     1801 cgcgccgctt tccgcgtttg agcgggacga ttttgcgtcg cacgccactg cggcgcctgg
     1861 tcggcgagca acgcgtcacg cgaacctcgc attttcttcc gccgccgacc acggatcggg
     1921 agatcgactg ggcgctcggc gcctgtctct ttgtgcgcaa cgaagcgtgg gatgagctcg
     1981 gtggattcga tcccggctac cggccgctgt atgtcgagga cgtcgatctt gcctggcgca
     2041 tgtggcaggc cggctgggcg gtttggcaaa cgccgtcggc gcgtgcgatg cacgagcacc
     2101 aggccgcgac cgacaagaag tttttcgacc ggcgcacgct gtggcacatg cacggcatgc
     2161 tccggttcgt gagaaagcat ccgcgcattc tcatgcccgt cgcgaatgtc aggtaagccc
     2221 tgcacgattc tcttcgtgca cggggccgat gagtggtacg gatcggacta tgtgctgtac
     2281 gaggcggtgc gtgcgctcaa aggaacggaa ttcgacgcga tggttctggt gccggatgac
     2341 gtgacgtcgg agcttccggc ggcgatgcgt cttagcggac gcctgcgagc tctgggtgtt
     2401 ccggtccgct cggtgccact gacagtgctg cgtcgacgtt acatgacccc gaatggtatt
     2461 gccaggcttc tggggagcgg acggtcttca ctccgcgccg cattggatgc gatcggcgat
     2521 cgtcacatcg cgatggttca ttcgcacacc gcaacagtat tgaccggggc ccgcgttgcg
     2581 cgcgcgttac atgtcccgca cctctggcac gtttccgaga tagtcgagcg cccgcgtgcg
     2641 gtgcgagcat ggctctcacg caaggtcgta cgatcggctg accgagtggt gacggtctcg
     2701 aatgcggtac gggatcacat tctcgaaacg cagcccgctg ccgggtcaaa agtctcggtg
     2761 gtctacaatt gtattgatgc agcgcgcttc accgaatcat cgtgcaccgg acggcgtagg
     2821 acgggaccgg atgatcggcc gctcatcgtc gggatgatcg ggcgtgttgg gacgtggaaa
     2881 gggcaggagc tgctcatcgc ggcggccagg accgtgtgca gcgtcgttcc caacgcgcgt
     2941 ttcgtactcg ccggcggtgt gttggagggg aaccttgcgg cgctcgacaa cctgcgatcc
     3001 cttgcatcag cttatggaat ttcggatcgc gtgacgattc aggagtactg cacggatacg
     3061 ccggcgttgc tccggtcctt cgacgtcttt gtgcaaccgt cactgcgccc tgatccgctt
     3121 ccaacgacga ttctcgaggc catggcgagc ggcctgccgg ttgtcgcaac ggaccacggc
     3181 ggtgcgcccg aaatggttag taacggggtt aacgggttgc ttagcatccc tggcgatgct
     3241 gatgcgatgg ctcgcgcgat cataagtctg ctgcacgatc cggaggcgcg catgaacatg
     3301 ggaaaggccg gctacgatcg ggtgctgcgc gac
//
LOCUS       DATIMD010000413         2438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3058640, whole genome shotgun sequence.
ACCESSION   DATIMD010000413 DATIMD010000000
VERSION     DATIMD010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3058640"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(44..1231)
                     /locus_tag="VLI40_09120"
     CDS             complement(44..1231)
                     /locus_tag="VLI40_09120"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF013345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HSU97378.1"
                     /translation="MNQINNDAGGHSGVLPQQIAQIQTPAPLVEVSRVKRNLDRMADY
                     ARLHKLQLRPHVKTHKTTVIGAAQMRRGAVGLTCATPREMEIMSSVASDLLLAHPPLG
                     LKVDRLLMLPRSVSIVTALDSVEAIDWVAEAASGASRTVRVYIELDVGMHRVGVAEAE
                     RVVELAVRVMGESALEYAGICFYPGHIREAVGDQGEKISALNDKLSEVVTALERAGLK
                     PPVVSGGSTPTAWHTHEMPLVTEFRPGTYVFNDRTTAAVGACKWDDCAFTVLATVVST
                     AVPGQAVVDAGSKALGREPMRGVAGEGFGALVGHEDVLVSAMSEEHGILDLSKTAWRP
                     RVGDTVRIVPNHVCIVVHLNDVLYAVDGDRVTGVWPVAARGRMAPFTDEEASAAAPAE
                     DLL"
     gene            complement(1236..1775)
                     /locus_tag="VLI40_09125"
     CDS             complement(1236..1775)
                     /locus_tag="VLI40_09125"
                     /inference="COORDINATES: protein motif:HMM:NF019241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1572 family protein"
                     /protein_id="HSU97379.1"
                     /translation="MNIESEYLQSAIKSFATYKDLADRAMAQVTDEQFFMSLDDESNS
                     IAVIVKHLAGNLRSRWTGFLTSDGEKPDRDRDAEFEINDSTTRAELQKAWEYGWKCAF
                     DELNALAPDDLARTIYIRAEPHSVVKAINRQLTHGAYHVGQIVFLAKHFSSGAWQTLT
                     IPRRASQAFNVEMFAQKRV"
     gene            complement(1925..>2438)
                     /locus_tag="VLI40_09130"
     CDS             complement(1925..>2438)
                     /locus_tag="VLI40_09130"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HSU97380.1"
                     /translation="YEMTLSLARAEGVTVDDDALYAAAYLHDMGGIPPYAKAGVDHGD
                     RSIQLVDSVLRDAGFPMEKAALVKEIIDHHQYYRPADTLAVASLFRDADILDFLGAID
                     VARILSLTTREKFTPDLPHAVEAIRQNMLQMPGRLQSAAAKREGAKRVAEMQRYLDEL
                     SAETDSLRVL"
BASE COUNT          469 a          833 c          649 g          487 t
ORIGIN      
        1 cgaattcacg aagcgatagc gcagcccctg actcgcagga cttctacaac agatcctcgg
       61 ctggagctgc ggcgctcgct tcttcatccg tgaatggcgc catgcgtccg cgcgcggcaa
      121 ctggccagac acccgtcacg cgatcgccgt ctacggcata cagtacgtcg ttcagatgaa
      181 ccacaatgca gacgtgattc ggcacaatgc gcacggtgtc tccaacacga ggacgccagg
      241 ccgtcttcga tagatcgagt atgccgtgct cctctgacat tgcggacact agaacgtcct
      301 cgtgtcccac gagtgcgccg aatccttcgc cggccacacc gcgcatcggc tcgcggccga
      361 gcgccttgga tcccgcatcg accactgcct gtccggggac ggctgtgctc actacagttg
      421 ccagtacagt gaaagcgcaa tcgtcccact tgcacgcgcc tactgccgcc gtcgtacgat
      481 cgttgaacac gtaagtacct ggccggaact ccgtcaccag tggcatctcg tgcgtgtgcc
      541 acgcagtcgg cgtcgatccg ccgctcacca ccggtggctt gagtccggcg cgctccagcg
      601 ctgtcaccac ctcgctcaac ttgtcgttca acgcggagat cttttcaccc tggtcgccca
      661 ccgcttcgcg aatgtgaccc gggtaaaaac agatccccgc atactcgagt gcgctttcac
      721 ccataacgcg aacagcgagt tccacaacgc gctccgcttc ggctacaccc acgcgatgca
      781 tcccgacgtc cagctcgatg tacactctga ccgtgcgact cgcgccagac gccgcctccg
      841 cgacccagtc tatggcctcc acggaatcca gcgccgtcac gatgctcacc gacctcggca
      901 acatcagcaa ccggtcgacc ttgagcccca atggtggatg cgccagtagc aggtccgacg
      961 cgaccgagct catgatctcc atctcgcgcg gcgtcgcaca ggtgagccct accgcgccgc
     1021 gccgcatctg agcagcgcct attacggtcg tcttgtgcgt cttgacgtgc ggccgaagtt
     1081 gcagcttgtg caaccgcgca tagtcggcca tgcgatcgag gttgcgtttg acacgtgaga
     1141 cctcgaccag cggagcaggc gtctggatct gcgcgatctg ttgcggcagc actcccgaat
     1201 ggccgccggc gtcattgttg atttgattca ttccgttaca cgcgcttctg cgcgaacatc
     1261 tccacattga acgcctgtga cgcacgacgt ggtatcgtca gcgtctgcca cgcgccggaa
     1321 gaaaagtgtt tcgcaaggaa tacgatctgc ccgacatgat atgcgccatg cgtgagctgc
     1381 cggttgatcg ccttgacgac ggaatggggc tcggcccgta tgtagatcgt tcttgcaagg
     1441 tcgtccggcg cgagtgcatt caactcatcg aacgcgcact tccatccgta ctcccacgcc
     1501 ttctgcagct cggcgcgagt cgtcgaatcg ttgatctcga actcggcgtc gcgatcgcga
     1561 tcaggctttt ctccgtcgga tgtgagaaaa ccagtccagc gagatcgcag attccccgcc
     1621 agatgcttta cgatcaccgc gatgctgttg gactcgtcgt ccagcgacat gaagaattgc
     1681 tcatccgtca cctgcgccat cgcccgatcc gcgaggtcct tgtacgtggc gaacgacttg
     1741 attgcgctct gcagatactc cgattcgata ttcactgaca tcctccgcgc tggcggtact
     1801 gacgccatgt catggcattg gctcgttaat taatctatac cgcccccaca gcgcatataa
     1861 ctgcgacccg gactcccgca aaggcccggc cctcgaccgc tcgacatgcg tccggaaatg
     1921 cgcgttacag cactcgcaat gaatccgtct ccgccgagag ctcgtccaga taccgctgca
     1981 tctccgccac ccgcttcgca ccttcccgct ttgccgccgc gctttgcaac cggcctggca
     2041 tctgaagcat gttctgccgt atcgcctcca ccgcatgcgg gaggtccggc gtgaacttct
     2101 cgcgcgtcgt cagtgacagt atccgcgcaa cgtcgatggc gccaagaaag tccagaatgt
     2161 cagcgtcgcg aaacagcgat gcgaccgcga gagtatccgc cggacgataa tactgatgat
     2221 ggtcgatgat ctccttcacc agcgccgcct tctccatcgg aaagccggcg tcccgcaaca
     2281 cgctgtccac tagttgaatc gagcggtcac catgatccac gccagccttt gcatacggcg
     2341 ggataccacc catgtcgtgt agatacgcag ccgcgtacaa cgcatcgtcg tccaccgtta
     2401 caccttccgc gcgcgccagc gaaagcgtca tctcgtag
//
LOCUS       DATIMD010000414         4180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2478311, whole genome shotgun sequence.
ACCESSION   DATIMD010000414 DATIMD010000000
VERSION     DATIMD010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4180
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2478311"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1084)
                     /locus_tag="VLI40_09135"
     CDS             complement(<1..1084)
                     /locus_tag="VLI40_09135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97381.1"
                     /translation="MRTTSLLLLCAAGVACAHNPAPTPAASPSSSASTTPSTTSTAGA
                     ATSSRDSAGKPGVGALSLPNANPFPSTYVPFPSHTTLIRNATIMTAAGPTMQNASILL
                     RDGKIVSVGTSITAPADAVVIDGTGKYVTPGIIDVHSHLGVYAAPGGGGLNDGNEATN
                     PNTANVWAEHSVWPQDPQFPRILAGGVTTVQILPGSANLFGGRSAILKVVPARTVQGM
                     KFPGAKYGLKMACGENPKRVYRTRGPSTRMGNVAGYRAAYIQAAEYRRKWDEWNANHK
                     GAPPTRDLGLETLAEVLRGNILVHNHCYRADEMAQMIDVAKEFGYKIRSFHHGVEAYK
                     IADLLAANDIGASVWADWGAFKLEAAD"
     gene            complement(1118..1789)
                     /locus_tag="VLI40_09140"
     CDS             complement(1118..1789)
                     /locus_tag="VLI40_09140"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HSU97382.1"
                     /translation="MTEFIAHRGVHDVYTENTLDAFQRAMDLGFHAIELDVHVTADGV
                     CVVNHDESVVTAKVALSIRGTYYETLHAAAPILPRLDEVLELVSGKAHAYVEIKSRDV
                     ESHLAEVLRRSSAAASVHSFDHEVILRMRQLLPQLRTGILQTSRLVDSAHALRAAGAT
                     DLWQWHEFVDRALVEQVTAAGGRVIVWTANTPSEWRVFDDLGVAAICTDLPISPTLAS
                     TQSTH"
     gene            complement(1786..2439)
                     /locus_tag="VLI40_09145"
     CDS             complement(1786..2439)
                     /locus_tag="VLI40_09145"
                     /inference="COORDINATES: protein motif:HMM:NF036525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSU97383.1"
                     /translation="MPDETTPNPADATGAPSSAAPRAPKLETLLAAAATTFATRGYSG
                     TSMRDIAHDSGISLSGIYYYTRGKSSLLYEIQSRTIDALLASAAQALSRVTRPMDQLL
                     QFVENHVSYSNENPAFVRVLSHETAPDGSDERREAVELKRQQYVDVLRDILNRVRQEY
                     EAPVSTQFAADMLFAMMSGPRQWGVSDTELNVGIASRLIYDLFVHGFTGGTPPTSPA"
     gene            2572..3132
                     /locus_tag="VLI40_09150"
     CDS             2572..3132
                     /locus_tag="VLI40_09150"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSU97384.1"
                     /translation="MEVTAQSVAEEPTDAELIRRWRSGESTAATRLVERHAPALARFI
                     AGEGERDNIDEVVQDTFVRAFGAIDSFRGESAFRTWLFTIARRLILDRRRSERRSRMV
                     ATVEEGDAVTTFDALDTMVADESMVRVRQAVEALSQKQREVFTLRLEQGLSYKEIAEL
                     VGSTEGAARVHYHNAMRAVKEFLDDE"
     gene            3122..3643
                     /locus_tag="VLI40_09155"
     CDS             3122..3643
                     /locus_tag="VLI40_09155"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HSU97385.1"
                     /translation="MMNDCQNIEIREVLPELVHGTLPEAERARVLLHLDGCDDCSAEL
                     AIIRAVYGSAVVPAVNVARIVAAIPPYRRRRSGMRRVYLELAAACLIGAVGISTFALH
                     NARSNSGQATISTTTQGLALVNTSDLSDDGLAQLTRDLDKLQAMPTVDPESVTPAALE
                     DAAEPAAAAGDSA"
     gene            3640..4176
                     /locus_tag="VLI40_09160"
     CDS             3640..4176
                     /locus_tag="VLI40_09160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97386.1"
                     /translation="MRVVTLMTAAVLCVTSVTAATSASAQGRRVRPMHPAPSEGVHPR
                     RQALEQQFRQRSEQIVRQRLNLNDDQVNRLRSVNANIGGQRNALMQQERAVRMDLRDE
                     MAKGSSADQSKVSQLMAQARDLQSKRFALQQDEQQQLSSFMTPVQVAQYIGLQAQIRQ
                     RIREMQNGQNGEPQGPDQ"
BASE COUNT          775 a         1276 c         1385 g          744 t
ORIGIN      
        1 cgtccgcggc ctcgagcttg aacgcgcccc agtccgccca caccgacgcg ccgatgtcgt
       61 tcgccgccag caggtcggcg atcttgtagg cttccacgcc gtggtggaac gagcggatct
      121 tgtagccgaa ctccttggcg acgtcgatca tctgcgccat ctcatcggcg cgatagcagt
      181 ggttgtgcac gagaatgttg ccgcgcagca cttcggcgag tgtctcgagc ccgagatcgc
      241 gcgtcggcgg cgcgcccttg tgattcgcgt tccactcgtc ccactttcga cgatactcgg
      301 cggcctgaat gtacgcggcc ctgtaaccgg caacgttgcc catgcgagtg gacggaccgc
      361 gcgtgcgata cacacgcttc ggattctcgc cacatgccat cttcaagccg tacttggcac
      421 caggaaactt catcccctga accgtgcgcg cgggaacgac cttgagaatc gcgctgcgcc
      481 cgccgaacag gttcgccgag ccgggaagaa tctgaaccgt cgtcacaccg cccgcgagaa
      541 tgcgcgggaa ctgcggatcc tgcggccaca cggaatgctc ggcccacacg ttcgcggtgt
      601 tcggattggt ggcttcgtta ccatcgttga gaccgccgcc gcctggcgcg gcatacacgc
      661 cgaggtgcga gtgcacgtcg atgattccag gcgtcacgta cttgcccgtg ccgtcgatca
      721 cgacagcatc ggccggcgcg gtgatggacg ttccgaccga gacgatcttg ccgtcgcgca
      781 gcaggatcga cgcattctgc atcgtcgggc ccgcggcggt cattatcgtc gcattcctta
      841 tgagcgtcgt atgcgacggg aacgggacat acgtgctggg gaatggattg gcgttcggca
      901 gcgacaacgc gccgactccg ggcttgccgg ctgaatcacg cgacgatgtt gcagcgcctg
      961 ccgtgcttgt tgtggaggga gtggtcgacg cactgctcga cggcgacgcg gctggcgtcg
     1021 gtgccggatt gtgcgcgcac gctactcccg cggcgcagag cagaaggaga ctggtagttc
     1081 gcatccagag atgagcctcg cgagtgagta cttcgggtta gtgagtactt tgagttgatg
     1141 ccagcgttgg actgatcggc agatcagtgc agatcgccgc gactccgaga tcgtcgaaca
     1201 cacgccattc ggaaggagtg tttgcggtcc acacaatcac tcttccgcca gccgccgtaa
     1261 cctgctcgac cagcgcgcga tccacgaact cgtgccactg ccagagatcc gtcgcgccgg
     1321 cggcccggag agcatgggcg ctgtccacga gccggctggt ctgaagaatc ccggtgcgaa
     1381 gttgcggcag caactgcctc atgcgcaaga tcacttcgtg atcgaacgag tgcaccgacg
     1441 ccgcggcgct actccgccgg agcacctcgg cgaggtggga ctccacgtcc cggctcttga
     1501 tctcgacgta ggcgtgcgcc tttccggaga ccagctctag tacctcatcc agccgcggca
     1561 ggatgggcgc cgcggcatgc agagtctcgt agtaggtacc gcgaatggat agcgcgacct
     1621 tggccgtaac gacggactcg tcgtgattca cgacgcagac gccgtcagcg gttacatgaa
     1681 cgtccagctc tatcgcgtgg aagccaagat ccatcgctcg ctgaaaggcg tcgagcgtgt
     1741 tctccgtgta aacgtcatga acgccgcgat gcgctatgaa ctccgtcacg cggggctggt
     1801 tggcggagtg cccccggtga agccgtgtac gaacagatcg tagatgagcc gcgacgcaat
     1861 ccccacgttg agctccgtgt cggagactcc ccactgtcgc gggccgctca tcatcgcgaa
     1921 cagcatgtcg gcagcgaact gcgtcgacac cggcgcctcg tactcctgcc gcacccggtt
     1981 gagaatgtcg cgcagaacat cgacgtactg ctgccgcttg agctccacag cctctctgcg
     2041 ctcgtccgag ccgtccggcg ccgtctcgtg cgacagcacg cgcacgaagg ccggattctc
     2101 gttggaatac gagacgtgat tctcgacgaa ctggagcagc tggtccatcg gcctcgtaac
     2161 gcgggacaga gcctgggccg ccgatgcgag cagggcgtcg atcgtacggg actggatctc
     2221 gtagaggagc gatgacttgc cgcgagtgta gtaatagatg ccggacaggg agatgcccga
     2281 atcgtgcgcg atgtcgcgca tgctcgttcc gctgtagcca cgggtcgcga acgtcgtggc
     2341 ggccgctgcc aggagcgttt ccagctttgg cgcacgcggc gcggccgatg atggagcgcc
     2401 ggtcgcgtcg gcggggttgg gcgttgtttc gtcgggcatc gtcctgtacc tcttgagact
     2461 ggggcgggtt catgaccgtc gaacggtcgt tctaaagaag ctagccgaag gacgtaaatc
     2521 cgtcaaccgc cgctacttaa cataagcagc ccgatgacgt ctatttagcg tgtggaagtc
     2581 actgctcagt ccgtcgccga ggaaccaact gacgcggaac tcattcgccg atggcggagc
     2641 ggggaaagca cggcggccac gcggctggta gagcggcatg cgccggcgct ggcgcggttc
     2701 atcgcgggcg agggtgagcg cgacaacatc gatgaagtgg ttcaggatac cttcgtcaga
     2761 gcctttggcg ccatcgatag ctttcgcggc gagagtgcct tccgaacctg gcttttcacc
     2821 atcgctcgaa gactgattct ggatcgacga cgatcggagc gacgaagcag gatggtggcg
     2881 acggtggaag agggtgatgc agtaacgaca ttcgatgcgc tggacacgat ggtggcggac
     2941 gaatcgatgg tgcgggtgag gcaggctgtc gaagcgctgt cgcagaagca gagagaggtt
     3001 tttacgctcc ggctggaaca ggggctttcg tataaggaga tcgcggagct ggttgggagt
     3061 acggagggcg cagcgcgcgt ccactaccac aacgcgatgc gcgcggtcaa ggagtttctc
     3121 gatgatgaat gattgccaga acatagagat tcgtgaagtg ttgccggagc tggtgcacgg
     3181 cacgctgccg gaggccgagc gcgcgcgggt gctgttgcac ctcgacggat gcgacgactg
     3241 ctccgctgag ctcgcgatca ttcgtgcagt gtatggcagc gccgtggttc cggccgtgaa
     3301 cgtcgcacgc atagtggcgg ccattccgcc gtatcgtcgc agacggtcgg gcatgcgccg
     3361 cgtttatctg gagctcgccg cggcgtgcct catcggcgca gtcggcattt ccaccttcgc
     3421 gctccacaat gcgcgcagca actccggcca ggccacgatc agcactacga cccagggact
     3481 cgcgctcgtc aacacgagcg atctgagcga cgatggactg gcgcagctca cgcgcgacct
     3541 cgacaagctc caggcaatgc cgacggtcga tcctgagtcg gtcacgccgg ctgcgctgga
     3601 agatgcggcc gagccggccg ctgccgcggg agactcggca tgagagtagt cacgctcatg
     3661 acggcggctg tgctgtgtgt gacgagtgta accgctgcga cgagcgcgag cgcgcagggc
     3721 cggcgtgtcc gtccgatgca tccggcgccg agtgaaggcg tgcacccgcg caggcaggcg
     3781 ctcgagcagc agtttcgcca gcgcagcgag cagatcgtca ggcagagact caatctgaat
     3841 gacgatcagg tcaatcgcct ccgctcggta aacgcgaaca tcggcggaca gcgcaacgcg
     3901 ctgatgcagc aggagcgcgc ggttcgcatg gacctgcgcg acgagatggc caagggaagc
     3961 tccgcggacc agtcgaaagt ctcgcagctg atggcgcagg ctcgtgatct ccagagcaag
     4021 cgcttcgcat tgcagcagga cgagcagcag cagctttcca gcttcatgac tcccgtccag
     4081 gtcgcgcagt acatcgggct ccaggcgcag atccggcagc gtatccgcga gatgcagaac
     4141 ggtcagaacg gcgagccgca gggcccggac cagtagtctt
//
LOCUS       DATIMD010000415         2936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5372063, whole genome shotgun sequence.
ACCESSION   DATIMD010000415 DATIMD010000000
VERSION     DATIMD010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5372063"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            183..707
                     /locus_tag="VLI40_09165"
     CDS             183..707
                     /locus_tag="VLI40_09165"
                     /inference="COORDINATES: protein motif:HMM:NF025292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin-like domain-containing protein"
                     /protein_id="HSU97387.1"
                     /translation="MRFLLLVSLLLGTPPGAVGGQRPRQTARPSIVGTWELLTFESRD
                     SAGVTTHPLGKRPKGILVYDQEQRVSAQLFDPDRPRFASGDRATGTDAEVRAAFNGAF
                     AYYGRYLLDTARSLVTHHVEGASFPNWIGTDLVREYRIDHDSARRDRLTITTRPQLVG
                     GHRIVTVLVWRRAP"
     gene            850..1182
                     /locus_tag="VLI40_09170"
     CDS             850..1182
                     /locus_tag="VLI40_09170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97388.1"
                     /translation="MTILISLLLLLAVTSPTWILLGMAIMLVRRWSGGWRLAAVLPLA
                     LPVGMGFRLARDLRHDATSHNLWPFEVAGTSTIALAVLTLVFVAHTRWQQSLKSESDI
                     STTPPNER"
     gene            1244..1738
                     /locus_tag="VLI40_09175"
     CDS             1244..1738
                     /locus_tag="VLI40_09175"
                     /inference="COORDINATES: protein motif:HMM:TIGR02246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HSU97389.1"
                     /translation="MPRHRLLLILLVAALSEGPRLLIAQSHSADSAAILRIVQQRAEA
                     NRTRNAEMQRANYAPDAIWINAFGARQSGRDSIVAFLRGLYADPGYRESRVTREDPPE
                     VVFIRPDVAIVHEFLESEGQRLADGTVISRRTHTTLVISKERGRWLIQYQYIGDERPH
                     AAPR"
     gene            1742..>2936
                     /locus_tag="VLI40_09180"
     CDS             1742..>2936
                     /locus_tag="VLI40_09180"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HSU97390.1"
                     /translation="MPITTRLIFVLATIALLAACERERAPADTVAADPTFCSQVHTTG
                     ARLSEQLAPLVPLMRTSTGVYPLEEGDASMVSRAWLAEAAERTIDVQYFIFSADNVGL
                     IAVDYLLRAADRGVHVRLLVDDFMLEVGGEDLLALDAHPNIEIRLYNPTANIGKNLPT
                     KLFNLTTDFRGFNQRMHNKTFIVDGEVAITGGRNIADEYFDYDHEFNFRDRDVLLLGG
                     ASVDVQRSFNQFWNNPLSVPIRSLVRSTVTPDTATTYRYLHDYACDPRNFWPQVRERI
                     KSVPVAFTRILESGALVWSDSVTFITDVPGKNAGTSGIGGGGASTDELIRLIKGAQKS
                     VTIESPYLVTTPLSQGLFREVIARGVRVRILTNSLASTDNLEAFSGYQRERDALLRIG
                     VEIYEF"
BASE COUNT          527 a          968 c          855 g          586 t
ORIGIN      
        1 cgtggagccc cgacgtatcg agtgacgcaa cccccggctc ctgcccgcaa tccgtataac
       61 ggtcgttgca gccgacgaac gatttaagga ttgcgcatgc tgcgcatgcg cttctatttg
      121 actcgttcgc agcttaactc aggcgttggg cagcacccga gcaatcgcca cgctgtagac
      181 tgatgcgttt ccttcttctc gtttcgttgc ttcttggaac tccgcccggt gcggttggtg
      241 gccagcgtcc gcgccagaca gcgcgtccct cgattgtggg cacgtgggag cttctaacct
      301 tcgagtcacg cgacagtgcg ggcgtgacga cgcatccgct cggcaaacga ccgaagggca
      361 tcctcgtgta tgaccaagag cagcgcgtca gcgcccagct cttcgatccg gaccgccccc
      421 ggttcgcctc aggcgatcga gccacgggca cggatgccga agtccgcgcg gcgttcaacg
      481 gagcgtttgc gtactacggt cggtacctgc tcgacacggc acgcagtctg gtgacgcacc
      541 atgtggaagg agcaagcttc cccaactgga tcggaactga tctcgtgcgg gagtatcgca
      601 ttgaccacga ctcggcgcga cgggatcggc tgacaatcac gacacgcccg caactcgtcg
      661 gcgggcaccg cattgtcacg gtgcttgtgt ggcggcgcgc gccataacgc atcgtggtgg
      721 agtgctgcat aacgcgcgct gaactggcaa gcatttgagg atttgcaaag gtttcgcctt
      781 cgctccttat tcgttcgctt gcaggttagc ttggccgtta ggtggatgcc gcgcatccgg
      841 gctggttcca tgacgatcct cataagcctt ctccttctcc tcgcggtaac cagcccaacc
      901 tggatcctcc tcggcatggc catcatgctc gtccgccgct ggtccggtgg ctggcggctc
      961 gccgcggtgc tgccgctcgc gctgcctgtc ggcatgggtt tccgccttgc tcgggatctg
     1021 cgtcatgacg ccacgagtca caacctctgg ccattcgaag tcgccggcac gtcgactatc
     1081 gccctcgctg tgctgactct tgtcttcgtc gcgcatacgc ggtggcagca gtccttgaag
     1141 tccgagtctg atatttcgac gacaccacct aacgaacgct gaagccgacg agtggcgccc
     1201 gtctcggtcg ccacggcacc ttctcatttc aacggactcc tcgatgcctc gccaccggct
     1261 gcttttgatc ctgttggtcg cagctctcag tgaagggccg cgactgctaa tagcgcagag
     1321 tcattcggcg gacagcgcgg caatcctgcg tatcgtccaa caacgcgcag aggccaatcg
     1381 cacgcgcaac gccgagatgc agcgcgcgaa ctacgccccg gatgccatct ggatcaatgc
     1441 ctttggagct cgacaatcag gacgagattc gatcgtagca ttccttcgtg ggctctacgc
     1501 cgaccccgga taccgcgaat cccgcgtgac ccgtgaggac ccgcctgaag tcgtcttcat
     1561 tcgtcccgac gtcgccattg tgcatgagtt cctcgagagt gaaggacagc ggctggcgga
     1621 tggcacggtc atctcgcgac gcacacacac cacgctcgtc atttccaagg aacgggggcg
     1681 ctggctcatc cagtaccaat acatcggcga cgagcgtccg cacgccgcac cacgataagg
     1741 aatgcccatc accacgcgcc tcatcttcgt cctcgccact atagcgcttc ttgccgcgtg
     1801 cgagcgcgag cgggcgcccg ccgacaccgt tgctgccgac cccacgttct gttcgcaggt
     1861 ccacaccacg ggcgcgaggc tctccgagca gctcgcgccg ctggttccgc tgatgcgaac
     1921 cagcactggc gtctacccgc tcgaagaggg ggacgcctcg atggtctcgc gcgcctggct
     1981 cgctgaagcc gctgagcgca cgatcgacgt ccagtacttc atcttctccg cggacaacgt
     2041 cgggttgatc gcggtggatt acctcctgcg cgccgccgac cgcggcgttc acgtgcggct
     2101 cctcgtggac gacttcatgc tcgaggtggg tggtgaggat ctgctcgcgc tcgatgcaca
     2161 cccgaatatc gagattcgtc tgtacaaccc aaccgccaac atcggcaaga atctccccac
     2221 caaactgttc aacctcacga ccgacttccg cggcttcaat cagcggatgc acaacaagac
     2281 gttcatcgtg gatggcgagg tcgccatcac cggcggccgg aacatcgccg acgagtactt
     2341 cgactacgat cacgagttca actttcgcga tcgcgatgtc cttctgctcg gtggtgcatc
     2401 ggtcgatgtg caacgatcgt tcaatcagtt ctggaacaat ccgctcagtg tgcctattcg
     2461 gtcactggtt cggtctaccg tcacgccgga cacggcgacc acgtatcgct acctgcacga
     2521 ctacgcctgc gatccgcgca acttctggcc acaggtccgc gaacgcatca agtcggtgcc
     2581 ggtcgcattc actcgcattc tcgaatcagg agcgctggtg tggtcggaca gcgtcacctt
     2641 catcaccgac gtccccggca agaacgcggg aacgagcggg atcggtggcg gtggcgcgag
     2701 caccgacgag ctgatccggc tcatcaaagg cgcgcagaag tcggtgacga tcgaatctcc
     2761 gtacctcgtg acgacgccat tgagtcaggg tcttttccgc gaggtcatcg cgcgcggcgt
     2821 gcgcgtgcgg attctcacca acagccttgc gtccaccgac aacctcgagg cgttcagcgg
     2881 ctatcagcgt gagcgagacg cgctgctgag gattggcgtc gagatctacg agttca
//
LOCUS       DATIMD010000416         2164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2190345, whole genome shotgun sequence.
ACCESSION   DATIMD010000416 DATIMD010000000
VERSION     DATIMD010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2190345"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1104)
                     /locus_tag="VLI40_09185"
     CDS             complement(<1..1104)
                     /locus_tag="VLI40_09185"
                     /inference="COORDINATES: protein motif:HMM:NF021596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HSU97391.1"
                     /translation="MADPGIDSIAVLQERTFGYFTREVNADTGLVGDSTRPESPASIA
                     ASGFACACYAVAAEHGILPRAQAAAHVARALRFLWEAEQSDSPDATGSHGFFYHFLDS
                     QTGRRAWKSELSTVDSAILFAGALVAADYFNGPSEDERAIRELADALYRRADWRWVSP
                     RDAISHGWKPEQGFLRFDWRGYNEALFVYILALGSPTFAPDPSIYSAWTASYQWRCVL
                     GHEYLYAGPLFTHQLSHVWIDFRGIQDEYMRAKKIDYFENSRRATLVQQEYAKRNPRK
                     FKGYAANSWGITASDGPGSFGGIVRQGKRSFYGYRARGVPFGPDDGTLAPWALVASLP
                     FAPELVVPAMRHLNHSYPELTGRYGYESSFNPTY"
     gene            complement(1097..>2164)
                     /locus_tag="VLI40_09190"
     CDS             complement(1097..>2164)
                     /locus_tag="VLI40_09190"
                     /inference="COORDINATES: protein motif:HMM:NF013400.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HSU97392.1"
                     /translation="RLAASAVARYGAPEVEQWFFEVWNEPNLRSFWRGTRAQYFRLYR
                     EAAHALREISPEIRVGGPATARNAWIDEFLDDCERTQTPVDFVSTHHYPTDRTVNVSD
                     DTEMQLAAMQRDILREEAQDARRRARGKPLFYTEWNTSADGHDPRHDEPYAAAFIVKT
                     VLQANGVVDAYSFWTFSDIFEEQYFPSHAFHGGFGLLTLDGIAKPSYRAFQLLHNVGT
                     ELVTPMDGMHANVAAWVIRSGNRITVLVVNSAPPQHDLVPESVVVHIASKVTVQMATI
                     ERIDDTHANAKQRWLEMGAPEYLRQADVDALHSASALDAEPYHVNSDDNGIHVAVDLP
                     PNGIAAVTLDLAGDLPRVGNG"
BASE COUNT          423 a          664 c          668 g          409 t
ORIGIN      
        1 gtacgtcgga ttgaagctcg actcgtaacc gtaacgacca gtgagctcgg gataggagtg
       61 gttcaggtga cgcatcgcgg gtaccacgag ctccggcgcg aacggtagcg aagcgaccag
      121 cgcccagggt gccagcgttc cgtcatcagg accgaacgga acaccgcgag cgcgatagcc
      181 atagaagctg cgcttcccct gacgtacgat tccgccgaac gatcccggac cgtcgctggc
      241 ggttattccc cacgagttgg ctgcgtaacc cttgaacttg cgcgggttgc gtttcgcgta
      301 ctcctgctgc accagtgtcg cacgtctgct gttctcgaaa tagtcgatct tcttcgcgcg
      361 catgtactcg tcctgaatgc ctctgaagtc gatccacaca tgagacagtt gatgcgtgaa
      421 gagcggccct gcatacagat actcgtggcc gagcacgcag cgccattgat agctggcagt
      481 ccaggcagag tatatggatg gatctggcgc aaaggtcgga gagccgagcg cgaggatgta
      541 cacgaagagc gcctcgttgt aaccgcgcca gtcgaatcgg aggaatccct gttccggctt
      601 ccatccgtgc gagatggcat cacggggcga gacccagcgc cagtcggctc ggcggtacag
      661 cgcatccgcg agctcccgga tggcgcgctc atcttcggaa ggaccgttaa agtagtccgc
      721 tgcgaccagc gcacctgcga acagaattgc tgaatcgacc gtcgagagct ccgatttcca
      781 ggcccggcgt cccgtctgcg aatcgagaaa gtggtagaag aaaccgtgcg agcccgtcgc
      841 atcgggcgaa tcactctgct ctgcctccca caggaagcgg agtgcacgcg cgacgtgagc
      901 ggccgcctgc gcgcgcggaa ggattccgtg ctctgccgcc acagcgtagc aggcgcatgc
      961 gaagccggac gcggcgatgc tcgccggtga ttcgggccga gtgctgtcgc ccacgagccc
     1021 cgtgtccgcg ttcacttcac gtgtgaagta gccgaaggtg cgctcctgaa gcaccgcgat
     1081 ggaatcgatg ccgggatcag ccattgccaa ctcgtggcag gtcgcccgcg agatcgagcg
     1141 taacagcggc aatgccattc ggtgggaggt cgacggctac atgaatgccg ttgtcgtccg
     1201 aattcacatg atacggctcg gcatcgagtg cagatgccga gtggagtgca tccacatcgg
     1261 cttgacgcag atactccgga gcgcccatct cgagccagcg ctgcttcgcg ttcgcatgcg
     1321 tgtcgtcgat ccgctcgatc gtcgccatct gcaccgtcac cttgctggca atgtgcacga
     1381 ccactgactc cggaacgagg tcgtgttgtg gaggtgcact gtttacgacg agcaccgtaa
     1441 tgcgattgcc agagcgaatc acccacgccg cgacgttggc gtgcatgcca tccatcgggg
     1501 taacgagctc ggttccaaca ttgtgcagca actggaatgc gcggtacgac ggcttcgcga
     1561 tgccgtccag cgtcagcaat ccgaaaccgc cgtgaaaggc gtgcgacggg aagtactgct
     1621 cctcgaagat gtcgctgaag gtccagaacg agtatgcatc cacgactccg ttcgcctgga
     1681 gcacggtttt tacaatgaac gccgccgcat agggctcgtc atgcctcgga tcatgaccgt
     1741 cagcggatgt gttccattcg gtatagaaca acggctttcc gcgggcgcgc cggcgcgcat
     1801 cctgtgcctc ttcgcgcagg atgtcgcgtt gcatcgcggc gagctgcatc tcagtatcgt
     1861 cgctcacgtt cacggttcga tcagtcgggt aatgatgcgt ggacacaaag tcgaccggtg
     1921 tctgtgtgcg ctcacaatcg tccaggaact cgtcgatcca tgcattccgt gcggtggctg
     1981 ggccaccgac gcgaatctcc ggactgattt ccctgagcgc gtgagcagcc tcgcggtaca
     2041 gccggaaata ctgcgcacga gtgccgcgcc agaacgagcg caggttgggc tcgttccata
     2101 cttcgaagaa ccactgctcc acctctggag cgccgtaccg cgcaaccgcg cttgcggcca
     2161 gccg
//
LOCUS       DATIMD010000417         4888 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_170537, whole genome shotgun sequence.
ACCESSION   DATIMD010000417 DATIMD010000000
VERSION     DATIMD010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4888
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170537"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..264)
                     /locus_tag="VLI40_09195"
     CDS             complement(<1..264)
                     /locus_tag="VLI40_09195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97393.1"
                     /translation="MPVSRTRASFLRGACAARCVAAIIAALSTAAPMSLSAQTVRGIA
                     RVDGSVHASIQTSILLVDETGSPVAGMMTDEDGGYALRAPRPGS"
     gene            complement(342..962)
                     /locus_tag="VLI40_09200"
     CDS             complement(342..962)
                     /locus_tag="VLI40_09200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97394.1"
                     /translation="MTRLLNAVLFLSFAAAPGVAMAQGGRGGFGGGGGGGRGRGQRGE
                     GDTTATGAPRPQMSFAEIVFAHRSDLQLADSQTTKVSEIRMRAMSRRVTLASTLDSVK
                     AIMAMNPTDVAAPSTDSSRKATAAQRRKLASVLGDLHDVDVNARNETLLVLNPNQQKK
                     AEQLEEQADAPVVPNNAAERGAGGGGRRGGGRPGGGMGGMNGMGNP"
     gene            complement(1129..1202)
                     /locus_tag="VLI40_09205"
     tRNA            complement(1129..1202)
                     /locus_tag="VLI40_09205"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1166..1168),aa:Ile,seq:gat)
     gene            complement(1361..1873)
                     /locus_tag="VLI40_09210"
     CDS             complement(1361..1873)
                     /locus_tag="VLI40_09210"
                     /inference="COORDINATES: protein motif:HMM:NF024252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSU97395.1"
                     /translation="MKSAREGLRIGGQKVTQGDLAKAVGVNRNTVSRWENGAMVPSDP
                     ATLASLAGALEVSVEWLISGEPAAGSAGSAGKAELHERSGRRYLDPATAELPERARSV
                     ALEYLDRLRKCGCTQEQRRGAESLLLAGARNTVSSTPFDERDDADVRADIDAAWDAVV
                     QILRREGKRP"
     gene            2021..2251
                     /locus_tag="VLI40_09215"
     CDS             2021..2251
                     /locus_tag="VLI40_09215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97396.1"
                     /translation="MTPLERKAALKAAVTLRELTMAGAAAELGVSYNHLTLVINGERI
                     GSARLEEAIAAMIGRPVGEVFGRTTRRPQKKR"
     gene            complement(2364..2708)
                     /locus_tag="VLI40_09220"
     CDS             complement(2364..2708)
                     /locus_tag="VLI40_09220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97397.1"
                     /translation="MLLDDLDVPGTIGMRTDFAGYDMARPFEEDPEDEGPANAFDDDD
                     DADLDIDDVDDDDDDDDEDDYELDVDEDDEDDEVDDDFDDDDEDDDEDLDDDLDEDTD
                     IDEVDDGEDADL"
     gene            complement(2860..4707)
                     /gene="typA"
                     /locus_tag="VLI40_09225"
     CDS             complement(2860..4707)
                     /gene="typA"
                     /locus_tag="VLI40_09225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HSU97398.1"
                     /translation="MSEKQQIRNIAIIAHVDHGKTTLVDKMLRQAGAFRDNQVVAERV
                     MDSNPLERERGITILAKNTAVSWHGTKINIVDTPGHADFGGEVERILRMVDGVLLVVD
                     AFDGPMPQTRFVLGKALALKRTPIVVINKIDRPGADPMRVHDEILDLFIELEADSAQL
                     DAPVVYASAREGVATMDMDVTPVDLAPLFQTIVDNVPAPATDENGPFQMLVSTIDHSP
                     YLGRLAIGRIERGTVNVGDNVALLAMDTTAAPVTSRVTRLFTYDGLDRIEVNTSTAGN
                     IVALAGLEGVEIGLTITDVNTPERLEGISVEEPTISVDFLVNNSPFAGKEGKFVTSRQ
                     LRERLYKELERNVALRVDDTAATDTWTVAGRGELHLTILMETMRREGYEFQVSRPRVI
                     TREGAGGERLEPYEELSIDVPEEFLGAVIEKLGPRRGEMIEMKNPGQGMTRLTYRIPA
                     RGLFGYRSEFLTDTRGTGIMHHRFLEYGQWAGPLSGRSRGTLVSMDSGVIVAFALANL
                     AERSTLFVSPTDPVYEGMIIGENSRPGDMDVNPTREKKMSNMRSKSTDENIQLEPPRV
                     MTLESALEYIEEDELIEVTPAAIRLRKRHLSANDRKKMSREAKRERVAG"
BASE COUNT          907 a         1618 c         1398 g          965 t
ORIGIN      
        1 ggaacccggc cgcggcgcgc gaagcgcata gccgccgtcc tcatcagtca tcattcctgc
       61 gacgggcgat cccgtttcat cgacgaggag gatgctcgtc tgtatcgatg cgtgcacgct
      121 tccatcgacg cgcgcgatgc cgcgaacggt ctgtgcggac agtgacattg gtgctgcagt
      181 gctgagcgcg gcaatgatcg ccgcgacgca gcgtgcagcg cacgcgccgc gcaggaaaga
      241 cgctctggtg cgggatacag gcatcaagtc cacgccccga atctacagtc gcgccttcag
      301 cgcgtcagat gccttgcccc tgcagtgtta caaggacgca atcacggatt acccattccg
      361 ttcattccac ccattccgcc accgggtcgc ccaccaccgc ggcgtccgcc gccgccggcg
      421 ccacgctcgg ccgcgttgtt gggcacaacc ggcgcgtccg cctgttcttc gagttgctcg
      481 gcctttttct gttgattggg attgagcacg agcagcgtct cgttccgcgc gttcacatcg
      541 acgtcgtgaa gatcgccgag taccgatgca agcttgcgac gctgcgctgc agtcgccttg
      601 cgtgacgagt cagtggatgg ggctgcgacg tcggttgggt tcatcgccat gatcgccttg
      661 accgagtcca gtgtgctcgc gagcgtgacg cgcctgctca tcgcacgcat gcggatctcg
      721 ctcaccttgg tagtctgtga atcagcgagc tgaagatcgg accggtgcgc gaagacgatc
      781 tccgcgaaac tcatttgagg tcgcggtgcg ccggtcgcgg tggtatcacc ttcgcctctc
      841 tggccgcgtc ctcgtccgcc gcctccaccg ccgccgaatc cgccgcgacc accctgtgcc
      901 atcgcaacgc caggcgctgc cgcgaaggat agaaagagaa ctgcattgag gagtcttgtc
      961 atgaattcag ttgaccggcg gaatgagatt tcgttaagac atttcaggtg aagcgttgtt
     1021 ccaccgatca gaccggtgtc ccaacaggcg tcccggatca tggacggagg aaaacaaaaa
     1081 agcgatggct catgtcgtat cgtcaacatg agccatcgcg aatgtatatg ggcctgggag
     1141 gagttgaacc tccgacctca cgcttatcag gcgtgcgctc taaccacctg agctacaggc
     1201 cctcgatccg tcctgcgcct tgaacgacca cgcggaaaac gatcgggagc ccttgaagat
     1261 aaaagagccc acacccccga gcaagcgatt gcactgcatc cgcacttcaa aaaccgcact
     1321 gaatccaccc tggaaccact caaaaactcg tcgggaatcc ctacggacgc tttccctcgc
     1381 gcctcaggat ctgcaccacc gcgtcccatg cggcatcgat atccgcgcgc acatcggcat
     1441 cgtcgcgctc atcgaatgga gtcgacgaca ccgtgttgcg agcaccggcc agcaacagcg
     1501 actccgcgcc tcgccgctgc tcctgcgtgc aaccgcactt ccgcagccgg tccagatact
     1561 ccagcgcaac cgacctggcc cgctccggga gttcggcggt cgccggatcc agataccggc
     1621 ggccagagcg ttcgtggagc tccgccttgc cggccgagcc ggccgagccg gccgcaggct
     1681 caccgctgat cagccactcg accgacacct ccagcgcgcc ggccagcgac gccagcgtcg
     1741 ccggatcgct cggtaccatc gccccgttct cccaccggct gacggtgttc cggttgaccc
     1801 ctacggcttt cgccagatcg ccctgcgtca ctttctggcc gccgatgcgc agcccttccc
     1861 gggccgattt cacccgatct ccaagcgaca ctcgccgtct gatccggcta cgtatcatga
     1921 attgcttgac ttgctacgcc cgcgtatcat attccacacc gcatgaggcg tgatacttct
     1981 aaccgttaga aatgcaacgt attggtagcc aagaatggct atgacgccac tcgaacgcaa
     2041 ggcggcgctc aaggccgcgg tgacgctgcg cgagctgacc atggcgggag ccgccgccga
     2101 gctcggggtg tcctacaacc acctgaccct ggtcatcaat ggcgaacgca tcggcagcgc
     2161 gcggctggaa gaggccatcg cagccatgat cggcaggccg gtgggggaag tgttcggacg
     2221 cacgacgcga cgcccgcaga aaaagcgcta gcggcgttac cgcagcgttg ctaccgccaa
     2281 gacaaagagg gcggccctct cagggccgcc ctctttccag atctgtcgcg ctgcgcgaag
     2341 gaccggctca cgccggcaca actttacaga tccgcgtcct cgccgtcgtc gacttcatcg
     2401 atgtcggtgt cctcgtccag atcatcatcg aggtcctcgt cgtcgtcttc gtcatcatcg
     2461 tcgaagtcgt cgtccacctc atcgtcttcg tcatcttcgt cgacgtcgag ctcataatcg
     2521 tcctcgtcat cgtcgtcatc atcatcgtcg acgtcgtcga tatcgagatc ggcgtcatcg
     2581 tcgtcgtcga acgcgttcgc cggaccctcg tcctccgggt cttcctcgaa cggtctcgcc
     2641 atgtcgtagc cagcgaaatc ggtgcgcatg ccaatcgtac cgggcacgtc gagatcatcc
     2701 aacagcattt ccttctccat ctgaattaca cggggttcac gggaagttaa tcaggcagcc
     2761 actcgcgaag tcaataccgg tcacacggaa gcgcagcggt tgtgcaacaa acgtgcaacc
     2821 cggtaaatcc ggtaagttcg gtaagtccgg ccgatccggt caaccagcta cacgctcacg
     2881 ctttgcctcg cgcgacatct tctttcgatc gttcgcgctg aggtggcgct tacgcaaacg
     2941 gatggccgca ggcgtcacct cgatcagttc gtcctcctcg atatactcga gcgcactttc
     3001 cagagtcatt acccgcggtg gctccagttg gatgttctca tcggtcgatt tggatcgcat
     3061 gttggacatc tttttttcgc gtgtcgggtt gacgtccatg tcacccgggc gcgagttctc
     3121 gccgattatc atcccctcgt acaccggatc cgtcggcgac acgaagagcg ttgaacgctc
     3181 ggcaaggttg gccagagcga atgcaacgat cacgccggaa tccatggata ccagcgttcc
     3241 gcgcgaacgc cccgacagcg gaccagccca ctgtccatac tccaggaacc tgtgatgcat
     3301 gattcccgtt ccacgagtat cggtcagaaa ctccgagcgg taaccgaaca gtccacgcgc
     3361 cggaatccgg tacgtcagac gggtcattcc ctgcccggga ttcttcatct cgatcatctc
     3421 gccgcggcgc ggaccgagct tctcgataac cgcacccaga aactcctcgg gtacgtcgat
     3481 tgaaagctct tcgtaaggct ccagcctctc gccacccgca ccctcgcgcg tgatcacgcg
     3541 cggacgcgac acctgaaact cgtacccctc gcgccgcatc gtttccatca gaatcgtgag
     3601 atgcagctcg ccgcgtcccg caacggtcca tgtatcggtc gcagccgtat catcgacgcg
     3661 aagcgcgacg ttgcgctcca actccttgta cagccgctcg cgaagctggc gcgacgtcac
     3721 gaacttccct tcctttccgg cgaagggtga gttgttgacg aggaagtcga ccgagatcgt
     3781 cggctcctcg accgagatcc cttccagccg ctcgggagtg ttgacgtcgg taatcgtgag
     3841 tccgatctcg acaccttcga gtcccgcgag cgcgacgatg ttaccagcgg tcgaagtgtt
     3901 gacttcgatg cggtccagtc cgtcgtatgt gaacagacgc gtcacgcgcg aggtaaccgg
     3961 cgcagcggtt gtatccatcg cgagcagtgc gacgttgtcg ccgacgttca ctgtgccgcg
     4021 ctcgatacga ccgatcgcga ggcgacccag atatggcgag tgatcgatgg tggataccag
     4081 catctggaac gggccgttct catccgtggc gggtgcgggg acgttgtcga cgatggtctg
     4141 gaacaacggc gccagatcga ccggcgtaac gtccatgtcc atcgtcgcca caccttcgcg
     4201 cgccgacgcg tagaccaccg gcgcgtcgag ctgcgccgag tctgcttcga gctcgatgaa
     4261 gagatccagg atctcgtcgt gcacgcgcat cggatcggcg cccggccgat cgatcttgtt
     4321 gatgaccacg atcggcgtgc gcttcagcgc gagcgccttg cccagcacga agcgcgtctg
     4381 cggcatcgga ccgtcgaacg cgtcgacgac gagcagaaca ccatcgacca tgcgcagaat
     4441 gcgctcgact tcaccaccga agtcggcgtg ccctggcgta tccacaatgt tgatcttcgt
     4501 cccgtgccag ctcactgctg tgttcttggc caggatggta ataccacgct ctctctcgag
     4561 cgggtttgaa tccatcacgc gctcggcgac gacctgatta tcccggaatg cgccggcctg
     4621 ccggagcatc ttgtccacaa gggtagtctt gccgtgatcg acgtgcgcga tgatggcgat
     4681 atttcggatt tgctgcttct ctgacatagc cttgaaattt aactggtcga ggggtctaaa
     4741 cggcgctcca ggatcgactg gttgtcgggg cgacgcacgt ggggccgacg catgcgtcgc
     4801 cccgacctgg cggtctgccc ccgcatgcgt cgccccgagc gactatcttt cgatggtgtt
     4861 gctacgcata gcggccgttc tcgggctg
//
LOCUS       DATIMD010000418         2852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4501507, whole genome shotgun sequence.
ACCESSION   DATIMD010000418 DATIMD010000000
VERSION     DATIMD010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2852
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4501507"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..362
                     /locus_tag="VLI40_09230"
     CDS             <1..362
                     /locus_tag="VLI40_09230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97399.1"
                     /translation="PDYTGSQRPGDALLRRPSHSGTASLFYAWSNAWSLGASANYVGK
                     RPDMDFSQFPSPVVTLASYVNVGVSGSLRVFRTNATAVSLTARVDNLLDRRYQDVFNF
                     PAPGRAILIGAKLSAVR"
     gene            497..1276
                     /gene="recO"
                     /locus_tag="VLI40_09235"
     CDS             497..1276
                     /gene="recO"
                     /locus_tag="VLI40_09235"
                     /inference="COORDINATES: protein motif:HMM:TIGR00613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HSU97400.1"
                     /translation="MPLVVTQAIVLHAFDYLETSRVLRLITREAGVQSVIAKGARRTR
                     GRVGTGVDLFAEGEAQIYIKPTRELHTLGAFDVTSSRTELALEMSRFTAASALAELAL
                     RVAGDEANAPMFDSLSATLDAVAVASGDAVVERALAGAWQMIADAGFTPSLDVCATCH
                     STVSRDATVTFSHPSGGVLCDDCARLAAVMRKLPPSARDTLRRWQTGEVVTGLAAPEA
                     RAHQRLLREFVREHVASDDRPLRAFAAWESDLGAPAAGQRG"
     gene            complement(2171..2515)
                     /locus_tag="VLI40_09240"
     CDS             complement(2171..2515)
                     /locus_tag="VLI40_09240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97401.1"
                     /translation="MLDGIVAVFAPFTGVSKQLQTIFQLERPPAVRKERGRLEILLRG
                     TGMTDAPMPERVAMAHQIADAARPLIRQHGKRQRRRYADRAIAVSFEDEQVMDAGIAT
                     SKFTYVALMPHE"
     gene            complement(2556..>2852)
                     /locus_tag="VLI40_09245"
     CDS             complement(2556..>2852)
                     /locus_tag="VLI40_09245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97402.1"
                     /translation="MHPRNALAKHTREARPALYLPRMESGRDGAALPQWRALCNDDEI
                     GRAHYLDAAMALARIHAGATLDWAGDIATMGSVARLPDGRVYRVEPSGPRELAK"
BASE COUNT          499 a          867 c          923 g          563 t
ORIGIN      
        1 cgccggacta taccggatcg cagcgacccg gcgatgcgct gcttcgccgg ccgagccatt
       61 ccggcaccgc atcgctcttc tacgcatggt cgaacgcatg gagcctcggc gcgtcggcca
      121 actacgtcgg caaacgtccg gacatggatt tctcacagtt tccatcacct gtggtcacac
      181 tcgcgtcgta cgtgaacgtg ggagtgtctg gcagtctgcg tgtctttcga accaatgcga
      241 cggctgtatc gctgacggcg cgcgtggaca atctgctgga tcggcgctat caggacgttt
      301 tcaactttcc ggcacccggt cgtgcaatcc tgatcggcgc gaagctgtca gccgttcggt
      361 aattgcacgc ctggctcgga cagaggcgag cgccatggga tcagtgagat tcacgttttc
      421 cgtttgacat tcgtgacggg cgaacgcctc gaccggattc ccaaacggaa aacgtgaatc
      481 tctatagatt tcgacgatgc cgctcgtcgt cacgcaagcg atagtccttc acgctttcga
      541 ctatctggaa acatcacgtg tgctgcggct catcacgcgc gaggcgggcg tgcagtccgt
      601 gatcgcgaag ggtgccaggc gcactcgcgg gcgagtcggc accggcgtgg atctcttcgc
      661 cgagggcgag gcgcagatct acatcaagcc aacgcgcgag ctgcatacac ttggcgcgtt
      721 cgacgtgact tcgtcgcgca ccgagctcgc gctcgagatg tcgcgcttca ccgctgcctc
      781 cgcgctcgcc gaactggcgc tccgagtcgc cggcgacgaa gcgaacgcgc cgatgttcga
      841 cagtctttcg gcgacgctcg acgcggttgc ggttgcgtcg ggtgacgcgg tggtcgagcg
      901 cgcactcgcc ggcgcgtggc agatgatcgc cgatgccgga ttcaccccgt ctctggatgt
      961 ttgcgcaacg tgtcacagca ccgtttcacg tgacgcgacc gtgactttct cgcatccgtc
     1021 cggtggtgtg ttgtgcgacg attgcgcgcg cctcgcggcg gtgatgcgca agctcccgcc
     1081 gtcggcacgc gacacgctgc ggcggtggca gaccggagag gtcgttacgg gactcgctgc
     1141 gccggaagct cgggcgcatc agaggctgct gcgtgaattc gtgcgcgagc acgtcgcatc
     1201 ggacgaccgg ccgcttcgag cctttgccgc gtgggaaagc gacctcggcg cacccgccgc
     1261 gggtcagaga ggatgatgtc cgcgaacagc cgacagtcgc ggccaaaagg tccgaaccaa
     1321 tggcgtgaca agtgcatcat atctgtgcga tcgagaatca gcgaaacctt cgggcgccgg
     1381 agagcgtctg actgatggag gtcgctgacg gcctggggtt gagggtcacc gttcgtacag
     1441 cgtgccggag catcggaccg gaacatcggg ctgtcggcgg gtgtctgcaa tgcgttggcc
     1501 gcagcgcgtg tggtcccgtg cgtgaaaatc gtcaggttcg gtctaaatgg ctctggcgcg
     1561 cgggattatg aggccgtatc ttcgcgatcg agtaggatgt ttgtggtcga acaatcgttc
     1621 aggagccagt tcaaaggaca ctttctagtc agcctggagt taaaaaatgg agttgcgttg
     1681 ggcagcactc atcggggtgc ttgcattcag cgcgctcgcg ccgcgatcgg cggccggcca
     1741 ggcgaacttg cccgggaccg gacgggatcg cggatctgga tcggagttgg gacagaacag
     1801 ccccaatcct ttcgtttcag agacgcggat gcctttcact gtgggcgatt atcccacgtg
     1861 ttcggatccg agtcgcgttt accgggtctc cttgcgtgtg tacaacattt tgtcgcagct
     1921 cgtggcagta cccgtattgc aaggtggaac cgggagcgtc gctggtgggg cgccattgga
     1981 aagcgtggag ctatcgtgcg gccagtacac agggtactgg gacgcgaaga attcccgcac
     2041 agggcaggat gcgccgccgg gcatctatct ctatcggttg gagatcgatg gcaggccggt
     2101 gacgaaaaag atgattcatg gaagataggg gcacgcgaat gatgtcattc ggcggcccct
     2161 atttttttcg tcactcgtgc ggcatcaacg cgacgtaggt gaacttcgaa gtggcaattc
     2221 cagcgtccat cacctgttca tcctcgaagc tcacggcgat cgcgcgatcg gcgtagcgcc
     2281 tgcgttgacg tttgccatgc tggcgaatca acggtcttgc ggcgtcggcg atctggtgcg
     2341 ccatcgcgac gcgttccggc atcggagcat cggtcatccc cgtgccgcga agcagaatct
     2401 cgagcctgcc gcgctccttg cgcaccgctg gcggacgctc gagctgaaat atcgtctgga
     2461 gctgtttcga cacaccggtg aacggcgcga ataccgccac gataccgtcg agcaccccat
     2521 ccgccgaccg cccccgccgc acgactcgct cctctctact tcgcaagttc gcgaggaccg
     2581 gacggctcga cccggtagac tcgaccgtcg ggcaatctcg caacgctacc catcgttgct
     2641 atgtcgccgg cccagtccag cgtcgcgccg gcatggatgc gcgcgagcgc catcgccgcg
     2701 tccagatagt gagcgcgccc gatctcgtcg tcgttacaca gtgcgcgcca ctgcggaagc
     2761 gcggctccgt cccgacctga ttccatgcgc ggaagataca gagcggggcg cgcttcgcga
     2821 gtgtgtttcg caagcgcgtt tcgcgggtgc at
//
LOCUS       DATIMD010000419         3964 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5084381, whole genome shotgun sequence.
ACCESSION   DATIMD010000419 DATIMD010000000
VERSION     DATIMD010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3964
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5084381"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1869)
                     /locus_tag="VLI40_09250"
     CDS             complement(<1..1869)
                     /locus_tag="VLI40_09250"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HSU97403.1"
                     /translation="MSVSALALVLSSCRSPSASTPPSSGRAGVPEGQTVLPTGVKLDP
                     AAASIPLGSMPLAMTLSPTGDRIVVLLNGWREQGFQVVDRASGKIVQTVPQAAAFIGV
                     AFSPDGKTLYVSGGNQDVVYRYAWHDGTASLTDSLVLAAKAPRKSGTRYPAGIAPSLD
                     GRLLYVAENIADSLAVIDLATGRVVQRLATGRYPYGVVVGRDGAVYVSAWGANTVSVF
                     QPGGATSLKDAGRIVVDRHPSAMELNADGSRLFVASGSTDRISVLDTKSHKVVARLLD
                     PPPTGPAEGSTPNALALSTDGTRLFAAEADNNAVAVFDLSADVAGVAAAHGADKLIGR
                     IPVDWYPTAVYAAHDTLMVLSGKGHGTAPNTDGPNPHRSAPKGSHAYTLGQTSGSLMT
                     VTLARADSAALAPLSARVARAQGWDARSHTGSATTYPPFQHVIYVIKENRTYDQVLGD
                     LPIGDGDTSLVFFPQKVSPNHHALAERFGDFDRFFTNAEVSADGHNWSTAAYATDYLE
                     KTVPSQYSGRGRSYDYEGTNGGYDRADIRDDDVSEPASGYLWDLAERAHVTLRNYGEF
                     VVRDTANGRAVYVGDKPFLATHTNPDYPGFDLNLMDQARVDVWLKEFAGYVKSGDMP"
     gene            complement(1965..3497)
                     /locus_tag="VLI40_09255"
     CDS             complement(1965..3497)
                     /locus_tag="VLI40_09255"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HSU97404.1"
                     /translation="MAAQGIVFVVGAGPDIPGLLTVRGRELLATADAVVYDRRAQRKL
                     IPGGVAGGPERYYVGSRSKGGRPASADIAQLLVTLARQEKRVVYLVHGDPLALGNGSE
                     LVTALHDASVEFEIIPGVPVGNAVATYSGIPLLSPTMTSATIFANGRSAARGGADADW
                     AAIAKVGATVVISDATAILPAVITGFAVAGVPGEIPAAAIVHAGRASQRVIIATLGTI
                     ADEMARAGLLRSVTVVIGWTVLLRDELAWFDIRPLFGVRIVFARSRYGSRAVADRLGE
                     LGAAIVDVPLPRITRLDLTQLRAEIERIADYEWLVFASPDAVTIFWEHLILDGKDTRS
                     LSNAKIACVEPATAAALLDRGVTVDVVQERFDPVVLTDALSERSDIPGASMLYLADDA
                     TAEPFGRDLEQTGATVTALPLYREVPNEKTYAGLRRVLGEHHSSLVVATSPAAAEEYV
                     RAAGEHVISSVPAAAYDEATAQVLRDAGIDVVITPARPGADTLVEAIRSKFGTTRQDI
                     LG"
     gene            complement(3595..>3964)
                     /gene="ccsA"
                     /locus_tag="VLI40_09260"
     CDS             complement(3595..>3964)
                     /gene="ccsA"
                     /locus_tag="VLI40_09260"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HSU97405.1"
                     /translation="PIWGAYWTWDARLTLTLFLWFIYAGYIILRGAIDDFEMRARFSA
                     VLGILGALLVPFIHLSVYFFRTMHPMPVLLKPSAPSMPSDMVITLVGAFCALTLLYAW
                     LLHERYLLATERDAALEGRV"
BASE COUNT          820 a         1289 c         1148 g          707 t
ORIGIN      
        1 cggcatgtcg ccgctcttta catagcccgc gaattccttg agccagacgt cgacccgggc
       61 ctggtccatc aggttgaggt cgaatccggg atagtcagga ttggtatgtg tcgcgagaaa
      121 tggcttgtct ccaacgtaca ccgcgcgacc attggcggtg tcgcgcacaa cgaactcacc
      181 atagttgcgc aacgtgacgt gagcccgttc cgcgagatcc cacaggtaac cgctcgccgg
      241 ctcgctcaca tcatcatcac gtatatcagc ccgatcgtat ccaccgttcg tcccctcata
      301 gtcgtagctg cggccacgtc cggagtactg actcggaact gtcttctcca gataatcggt
      361 agcatacgcg gctgtggacc agttgtgtcc gtcggcgctt acttcagcgt tggtgaagaa
      421 gcgatcgaaa tctccgaacc gctccgccag cgcgtgatga tttggcgaaa ctttctgcgg
      481 aaagaagacg agcgaagtgt ctccatcgcc gattggcaga tcacccagca cctgatcgta
      541 ggtacggttt tccttgatta cgtagattac atgctggaac ggcgggtacg tcgtggcact
      601 gcccgtgtgt gacctcgcat cccaaccctg cgcacgggca acgcgcgccg agagcggcgc
      661 caaggccgcc gaatcagcgc gcgcaagcgt caccgtcatg agcgaaccgg acgtctggcc
      721 aagcgtgtag gcgtgtgatc ccttcggtgc cgaacgatgc ggattcggac cgtcggtatt
      781 gggcgccgtt ccgtgaccct tgccgctcaa taccatgagc gtatcgtgag cagcgtagac
      841 cgccgtgggg taccagtcga ccggaatgcg cccaatcaac ttgtcggctc cgtgcgccgc
      901 cgcaactccc gcgacgtccg cactgagatc gaacaccgcg acggcgttgt tatccgcctc
      961 agccgcgaac agccgcgtgc cgtcggtgga aagcgcgagc gcgttcggcg tgctgccttc
     1021 tgcggggccc gtcggtggcg gatcgagcag gcgcgctacg accttgtgac tcttcgtgtc
     1081 cagcaccgag atgcgatctg tgcttcccga cgcaacgaac aggcgtgaac catctgcgtt
     1141 caactccatc gcggacggat ggcgatctac aacgatgcgt ccggcgtcct tcagcgacgt
     1201 tgcgccgccg ggctgaaaca ccgagaccgt atttgcgccc cacgccgaca cgtacacggc
     1261 accgtcccga ccgaccacca ctccgtacgg atagcgcccg gtagcgagcc gctgcacaac
     1321 gcgtccggtc gccagatcga tcaccgccaa tgaatccgcg atgttttcag ccacatacaa
     1381 caggcgtcca tcaagcgacg gagctattcc agcgggatat ctcgttccgg atttccgtgg
     1441 tgcctttgcc gcgagaacca ggctgtcagt cagcgatgct gtgccatcgt gccacgcgta
     1501 acggtacacg acatcctggt taccgccgga tacgtacagc gttttgccat cgggcgaaaa
     1561 ggcgacgcca atgaacgcag ccgcctgtgg caccgtctga acgattttac cggaagctcg
     1621 atcgacgacc tgaaatccct gctcacgcca tccgttgagc agcacaacaa tcctgtcacc
     1681 cgtcggcgat aacgtcatcg ccaatggcat cgaccccagc gggatcgacg ctgccgcggg
     1741 atcgagcttg acgcctgtag ggagaaccgt ctgtccttcc ggaactcccg cgcgccccga
     1801 tgacggaggc gtgctcgcgc tcggcgagcg acatgaagag agcaccagtg caagtgcact
     1861 gacactcatc gcagtcgcga aggtcatccg acgccgaccg ccgatatcat tgaacgtgaa
     1921 gatgtgccgg aacaggtgcg tcaagttccc acccgcgttt gagctcaacc aaggatgtct
     1981 tgcctggtgg taccgaattt cgagcgaatt gcttcgacga gcgtgtcagc acccggtctg
     2041 gccggagtga taacgacgtc gattccagca tctcgtagaa cctgagccgt cgcttcgtca
     2101 tacgcggccg ccggaaccga acttatcaca tgctccccag cagcacggac atattcctcg
     2161 gctgccgctg gcgacgtcgc tacgacgagg ctcgaatggt gttcgccgag cacgcggcgc
     2221 aatcccgcat acgtcttctc gttgggcacc tcacggtaca acgggagcgc ggtgaccgtg
     2281 gcacccgtct gctccagatc gcgcccaaac ggctcggcgg tcgcgtcgtc agcgagatac
     2341 agcatcgagg cacccggaat gtccgatcgc tccgacagtg cgtcggtcag cacgacagga
     2401 tcgaagcgct cctggaccac gtcgaccgta acaccgcgat ccagcaatgc agcagcagtg
     2461 gcgggctcga cgcacgctat ctttgcgttc gatagagatc gcgtgtcctt gccatcaaga
     2521 atgaggtgtt cccagaagat ggtcaccgca tccgggctgg cgaacacgag ccactcgtaa
     2581 tccgcgattc tctcgatctc agcgcggagc tgagtcaggt cgagtctcgt gatacgtggc
     2641 agtggaacgt caacgatcgc cgcgcccagc tcgccaaggc gatctgcgac agcacgcgac
     2701 ccgtagcgtg atctggcgaa gacgattctg acgccgaaca gcggacgaat gtcgaaccac
     2761 gcaagctcgt cgcgcagaag gaccgtccat ccgatcacca cagtcaccga gcgcagcaat
     2821 cccgcacgcg ccatctcatc cgcgatggta ccgagtgtcg cgatgatgac gcgctgtgaa
     2881 gcacgcccag cgtgaacgat cgccgctgcg ggaatctcgc ccggaacacc agctactgca
     2941 aaaccagtaa ttaccgccgg gagaatcgct gtcgcgtcgc ttatgacgac cgtcgctccg
     3001 actttcgcga tcgcggccca atcggcatca gcgccaccgc gtgcagcgct gcggccgttc
     3061 gcgaagatcg tcgccgacgt catcgtcggc gacaaaagcg gaattccgga atatgtcgca
     3121 accgcgtttc ccaccggcac accgggaatg atctcgaatt cgacgcttgc atcatgcagt
     3181 gccgtgacga gctcgctgcc gttgccgagc gcgagcggat ctccgtggac cagatagacg
     3241 acccgttttt cctgacgcgc gagagtgacg agcaattgcg ctatgtcggc ggatgcaggg
     3301 cgcccgcctt tcgagcgtga gccgacgtag taccgctccg gaccgccagc cacgccaccg
     3361 ggaatgagct ttcgctgcgc gcgacggtcg tacaccacag cgtcagcagt cgcaagaagc
     3421 tccctgccgc gcacggtgag cagtcctgga atgtcaggcc ctgctccaac gacgaagact
     3481 attccttgcg ccgccactta cgcctcctcc acagcaaact tcctgcgtag cacgtgtaaa
     3541 ccagcccggc gacggtgtac gcgagatgat accagtatgc gtcctgtggt ggcatcagac
     3601 ccgcccctcc aatgcagcgt cacgttcggt cgcgagcaag taccgctcat gcagcaacca
     3661 cgcatacaac agagtcaacg cgcagaacgc acccacgagt gtgatcacca tgtccgacgg
     3721 catcgaaggc gcactcggct tgagcagcac tggcatcggg tgcatggttc ggaagaagta
     3781 cacgctcaag tgtatgaacg ggacaagcag tgcgccgagg attcccagca ccgccgagaa
     3841 ccgcgcacgc atctcgaaat catcgatcgc gccgcgcagg atgatgtagc ccgcgtagat
     3901 gaaccagaga aacagggtaa gcgtcaggcg cgcatcccat gtccagtacg caccccatat
     3961 cggc
//
LOCUS       DATIMD010000420         2542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1039183, whole genome shotgun sequence.
ACCESSION   DATIMD010000420 DATIMD010000000
VERSION     DATIMD010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1039183"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VLI40_09265"
     CDS             complement(<1..251)
                     /locus_tag="VLI40_09265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97406.1"
                     /translation="MTAPESVATAPPFVPASSLDISLDVETPEQIALSYSIAGIGSRG
                     AAAAIDTLISFAILVAMTAILLIAAGHFATKPVKTSPSSA"
     gene            complement(248..1585)
                     /gene="mnmE"
                     /locus_tag="VLI40_09270"
     CDS             complement(248..1585)
                     /gene="mnmE"
                     /locus_tag="VLI40_09270"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF003661.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HSU97407.1"
                     /translation="MNSGDEDTIAAEATARGRGAIAVIRVSGPAAFPIVKRHVATWPE
                     SPRQTTLCTIRDGNGDVLDEALVTTFVAPASFTGEDVVEIATHGGAIVPTLVLAALVA
                     SGARVALPGEFTRRAVLNGKLDLVQAEAIGDLVDSTSRAMQRVAMAQLDGGLSRRIEE
                     LRDRVIGLESLIAYDIDFPEEDDGPIPKSRIATATGSVIASLDDLLATAPAGELVRHG
                     ALVVIAGAPNAGKSSLFNAMLGRSRAIVTEIPGTTRDAIEAVLDAGTWPIRLVDTAGL
                     RDTTDVVERLGIEVATRYLASADVVLACGDSADDVSRTSAAVSQLTDAPVIPVRTKGD
                     LAAAAEPNMVSATTGRGIRELLDAVTAAVSERHGRAPLDAPILTKERQRFCVEQARAE
                     MVAFAAAIGDDGLPSSVAAVHLRSAVNALADVTGTIDVEDVLDRLFRNFCVGK"
     gene            complement(1582..2361)
                     /locus_tag="VLI40_09275"
     CDS             complement(1582..2361)
                     /locus_tag="VLI40_09275"
                     /inference="COORDINATES: protein motif:HMM:NF024874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSU97408.1"
                     /translation="MRITYIGHATLLIEIGGKKILTDPNFDPALGRFLARVSKPGIAI
                     GELPKLDMILLTHAHADHLSFRSLAEIQRAPLYAPPAVARWIRRHGVTNAIELGPGES
                     LTSGSLTVHVEAATHAGNRYVIDRWRKQANMYLIATNYESVFFAGDTALTEGTTALVQ
                     RELKGRRLDVALLPIGYAPAWKAESFNRGHLTSLGALTLFERLGARYLIPYHWGTFNH
                     VTASAYDAIREMREHVKTHARGTDVRILEPGESLQVTPPSA"
BASE COUNT          470 a          882 c          723 g          467 t
ORIGIN      
        1 gctgacgaag gactcgtctt tacaggcttc gtagcaaaat ggccggccgc gatcagcagt
       61 atcgccgtca ttgcgacgag tatcgcgaag ctgatcaacg tgtcgatcgc cgcggcagcg
      121 ccacgcgatc ctatcccggc aatggaatag gacagagcga tctgctccgg cgtctccaca
      181 tccagcgaga tatcgaggct ggacgccggc acgaacggtg gcgctgtcgc aactgattcg
      241 ggagccgtca tttgcccacg cagaagtttc ggaagagacg atccaggacg tcctcgacgt
      301 cgatcgtgcc ggtcacatcc gccagcgcgt tgaccgcact gcgaagatgc accgccgcga
      361 cggacgacgg caatccgtca tccccgattg ccgccgcgaa tgcgaccatc tcggcccgtg
      421 cctgctccac acagaaacgc tgccgctcct tggtaaggat gggagcatcc agcggtgctc
      481 ttccatgacg ctcggacacc gccgccgtga ccgcatcgag aagctcgcgt atgccgcgcc
      541 ctgtcgttgc acttaccatg ttcggttcgg cagctgccgc cagatcgccc tttgtccgca
      601 ccggaatcac gggcgcatcc gtcagctgtg ataccgcggc ggatgttcgc gacacatcgt
      661 cggcactgtc gccacatgca agcaccacgt ccgctgatgc aagataccgc gtcgccacct
      721 cgatcccgag tcgctcgacg acgtccgtcg tatcacgcag gccggctgtg tccaccagtc
      781 gaatcggcca ggtccccgcg tccagtaccg cctcgattgc atcgcgcgtg gtcccgggaa
      841 tctcggttac gatggcccgc gacctgccca gcatcgcgtt gaacagcgat gacttcccgg
      901 catttggcgc gcccgcgatc acgacaagcg ctccatgccg caccagctca cccgctggcg
      961 ccgtcgcgag cagatcgtcc agcgatgcaa tgacgcttcc tgtcgcggtc gcaatcctcg
     1021 acttcggaat tggtccgtcg tcctcttccg gaaaatcgat gtcgtacgca atcagagatt
     1081 ccagcccgat cacccggtcg cgcagctcct cgatccgccg cgacagaccg ccgtcgagct
     1141 gagccatcgc cactcgctgc atcgcgcgcg aggtggaatc gacgagatct ccgattgcct
     1201 ctgcctgcac cagatcgagc ttgccgttca acaccgcccg acgcgtgaat tcgcccggca
     1261 gcgcaacgcg cgcccccgac gcaacgagcg cagcgagaac gagcgtcggt acgatcgcgc
     1321 cgccatgggt ggcgatctcg accacatcct cgccggtaaa cgatgccggc gccacgaagg
     1381 tcgtaacgag cgcctcgtcc agcacgtcgc cgttcccgtc gcgtatcgtg catagcgtcg
     1441 tctgtcgcgg actttcgggc catgttgcca catgccgctt cacgatcggg aacgccgccg
     1501 gtccggaaac gcgaatcacg gcgatggcac ccctgccgcg tgccgtcgcc tccgccgcta
     1561 tcgtgtcttc gtctccgctg ttcaagcgga cggcggcgtc acttgcagcg actcaccagg
     1621 ctcgagaatg cgcacatcgg taccacgtgc gtgcgtcttc acgtgctctc gcatctcacg
     1681 tatcgcgtcg tacgccgacg cggtcacatg attgaacgtc ccccagtgat acggaatcag
     1741 atatcgcgcg cccagtcgct cgaacagcgt tagcgcaccc aggctcgtga gatgtccccg
     1801 gttgaaactc tcagccttcc aggccggtgc gtacccgatc ggaagcagcg cgacatccag
     1861 ccggcgcccc ttcagctctc gctgcacgag cgcagtcgtc ccctcggtga gcgcagtatc
     1921 gccagcgaag aacacgcttt cataattagt cgcaatcaga tacatatttg cctgcttgcg
     1981 ccaccggtct attacgtatc ggttgccagc gtgtgtcgcc gcttccacgt gcacggtgag
     2041 actgccgctc gtaagcgact cgccaggccc cagttcgatt gcgttcgtca ctccatgccg
     2101 tcggatccat cgcgcgacag caggtggcgc atacagcggc gcgcgctgga tttccgcgag
     2161 cgaccggaac gacagatggt ccgcgtgtgc atgcgtcagc agtatcatgt ccagcttcgg
     2221 caactcgcca attgcaattc ctggcttact cacccgagcc agaaaccgcc cgagtgccgg
     2281 atcgaaattg gggtcggtga gaatcttctt cccaccgatc tcgatcaaca gagtcgcatg
     2341 cccgatgtac gtgatgcgca tcccttaacc tacaccaacc acgcgccgaa ttggttgtcc
     2401 ctcccggccg cgctctacga caccccgaat tggtggtccc gccgcgtagg gcgcggattc
     2461 atccgcgcct tggacccacg gaccggaact ggattcaaca ccgtcacgtc gcaggagtaa
     2521 gtgatgccag gcgaaggtgg gg
//
LOCUS       DATIMD010000421         1625 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1331060, whole genome shotgun sequence.
ACCESSION   DATIMD010000421 DATIMD010000000
VERSION     DATIMD010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1331060"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1388)
                     /locus_tag="VLI40_09280"
     CDS             complement(<1..1388)
                     /locus_tag="VLI40_09280"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSU97409.1"
                     /translation="MLPPDPLADFHPIVRDWFTETLGAPSPPQIQGWPVIASGDHALI
                     LAPTGTGKTLAAFLWELNALIVEGLAAPLANGVHLLYVSPLKALNNDIQRNLERPLAE
                     LRRRFEQAGLAFPEIRVAVRTGDTPASQRQRMIRKSPHILITTPESLNIMLTSLRGRG
                     MFASTRTVILDEIHAVAGTKRGAHLAVTMERLVQLTPNAEGPQRIGLSATQRPLDEIA
                     RFLGGTNRTVSVVDCGLAKELQLTVQSPVPDLAKVEGSVWPSVAQLVLNETRNARTTL
                     VFVNNRAQAERIAARVNALAEEEIAQPYHGSIARERRLALEQRLKAGELRALITTSSL
                     ELGIDIGSVDLVIQLQSPKRVSAALQRVGRAGHTLGVASRGVFVPTFRDDAMETAAIV
                     SAMRAGEVEPTRVIQNALDVLAQVIVAAVSVDDWDADELYALIRRSYPYGALPRAPYD
                     EVVAMLSGKYPS"
BASE COUNT          274 a          487 c          538 g          326 t
ORIGIN      
        1 tcggacggat actttccgga cagcatcgcg actacttcgt cgtaaggcgc acgtggaagc
       61 gcgccgtacg gatacgatcg ccggatgagc gcgtacaatt cgtccgcatc ccagtcgtcg
      121 accgatacgg ctgctacaat cacttgtgcc agtacatcga gagcgttctg aatgacacgt
      181 gtcggctcga cctcgcctgc acgcatcgcc gagacgatcg cggccgtctc catcgcgtcg
      241 tcccggaacg tcgggacaaa tactccgcga ctcgcgacac caagtgtgtg cccggcgcgg
      301 ccgacgcgtt gcagcgctgc ggagacgcgc ttgggtgatt gaagctggat cacgagatcg
      361 acgctgccga tgtcgatgcc cagctcgagc gagctcgtgg ttatgagcgc gcgcagctcg
      421 ccggccttga gacgctgctc cagtgcgagc cgtctttcgc gcgctatgga gccatggtat
      481 ggttgcgcga tctcctcttc ggccagtgcg ttcacgcgcg ccgcgatgcg ttccgcctgc
      541 gcacgattgt tcacgaagac gagtgtcgtg cgcgcgttgc gtgtttcgtt cagcacgagc
      601 tgcgcgaccg agggccagac gctgccctcc accttggcga gatcggggac cggggattgt
      661 accgtcagtt gcagttcttt cgcgagtccg cagtccacaa ctgaaactgt gcgattggtg
      721 ccgccgagga agcgggctat ttcgtcgagg ggccgttggg tcgctgagag accgattcgc
      781 tgtggacctt ccgcgttggg agtgagctgg accagtcgtt ccatcgtgac ggccagatgt
      841 gcgccgcgct tcgtccccgc gactgcgtgt atctcgtcga gaatcaccgt gcgtgtggat
      901 gcgaacattc cgcggccgcg cagcgaggtc agcatgatgt tgagcgattc cggcgtcgtg
      961 atgaggatgt gcggcgactt gcggatcatg cgctggcgct ggctcgccgg tgtgtcacca
     1021 gtgcgcactg ctacgcgtat ctccggaaag gcgagccccg cctgctcgaa tctcctgcgc
     1081 agctcggcga gtggccgctc gagattgcgc tggatgtcgt tattgagcgc cttgagcggc
     1141 gacacgtaca gcagatgcac accgttcgcg agcggcgctg cgagtccttc gacgatgagc
     1201 gcgttgagct cccagaggaa cgcagcgagc gtctttccgg ttccggtcgg cgcgagaatg
     1261 agagcgtggt cgccgctcgc gattaccggc catccctgaa tctgtggcgg cgatggcgcg
     1321 ccgagcgtct cggtgaacca atcgcggacg atggggtgga agtcggccag gggatctgga
     1381 ggcaacacgg gtcagttagt cgtcattccc gcgaacgcgg cttgaagact cgtcattccc
     1441 gcgaacgcgg cttgaagact cgtcattccc gcgaaagcgg gaatccatgt tatcgatctt
     1501 tggattcgat ggtaccgcaa acctggtcgg cagcagatgg attcccgctt tcgcgggaat
     1561 gacggaacag gttcccgcgt tcgcgggaat gacggagtcg tttcagcgcc ccggtgcgtc
     1621 accca
//
LOCUS       DATIMD010000422         2744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3921998, whole genome shotgun sequence.
ACCESSION   DATIMD010000422 DATIMD010000000
VERSION     DATIMD010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3921998"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VLI40_09285"
     CDS             <1..252
                     /locus_tag="VLI40_09285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97410.1"
                     /translation="ALIWLLGTGVLFGIGAYCRRRAAAYLLDEPGRWDLFREWRLLNS
                     SRYDPAARPFVRAQVVVALVLPVWWLGGGALIMSLTAAA"
     gene            377..739
                     /locus_tag="VLI40_09290"
     CDS             377..739
                     /locus_tag="VLI40_09290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97411.1"
                     /translation="MHGVPADLDLTPFVGASLQRIDLGKWIIHFQFDTHPAGVISVEG
                     EWELLDSLGAVIDQQEDPAERESYRLHHLQMHVVVSAHVQALRWFSLTFDNGMVLKVY
                     DASSQHESFSIQPGDVYI"
     gene            complement(837..2084)
                     /locus_tag="VLI40_09295"
     CDS             complement(837..2084)
                     /locus_tag="VLI40_09295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97412.1"
                     /translation="MPRQNGSTSSDTPLPARVHILGAGPVGLLMTALLQSSERLSVHL
                     YEKRRDYSRTRMVQLASYLVADSVASYCTDYIDEESVAAIFDPEDIDEGLALRRSIPS
                     DLMTLLRGWTQGFCPLNTIERSLSDLIDARQSRPVQRTTAVITAQDAMAMLAPGDILI
                     DCTGAKSVLRDHLVPHAGAADDSGDANTFKLRLEYALVITFLYGQAYDCNEYCKYSKN
                     IENAQYKFIPAVNRTYYDGSITHVTGIVKISAEDYARMPSRFDGQWLRGNFPHVAESM
                     DRFIGKIKEETNGEIVGDLEIIRIPLDLYRARNATSREWHRTGPDDHPFTRSPVFLVG
                     DSAMGSPYFQSISLGFECAMFLAGLHAQRDVSLADMLDRYERFAYQQWLRVYMRSKMI
                     KHNKDLLECVGDTNALLEKLHIY"
     gene            2457..>2744
                     /locus_tag="VLI40_09300"
     CDS             2457..>2744
                     /locus_tag="VLI40_09300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97413.1"
                     /translation="MRLNAAASVLLGLTLTSLAVQAQTALVITRPIVVHGDLPSVRVM
                     DTARALVFRVYYDSVSQKAALSAVPTLADMYAELAQSTGARGGKIEWAAVAF"
BASE COUNT          486 a          854 c          851 g          553 t
ORIGIN      
        1 gcattgattt ggctcttggg caccggcgtg cttttcggca ttggcgccta ctgtcgacgc
       61 cgagcggcgg cttatttgct tgatgaaccc ggacgctggg atctctttcg cgagtggcgg
      121 ttattgaatt ccagtcggta cgaccccgca gcgcggccgt tcgttcgtgc acaagtagtc
      181 gtagctcttg tgcttcctgt ttggtggttg ggcggcggtg cgctcatcat gtccctcaca
      241 gcagctgcct aacgaacggt gaagctgcca aggaatctgt ggattgcgcc gggctccgcc
      301 cggcgctcct atttgacttc cttgcagctt cgctcaagcg ttcggcgaca tccacgttca
      361 ttcggaaggc tgccacttgc acggtgttcc ggcagatctg gacctcactc cgttcgtcgg
      421 cgcctccctc cagcgtatcg acctcggaaa gtggatcatt cacttccagt tcgacacgca
      481 ccccgccgga gtgattagcg ttgagggcga gtgggaactc cttgactcgc tcggcgcggt
      541 gatcgatcag caggaagacc ccgcagagcg cgagtcatat cgacttcacc acctacagat
      601 gcacgttgtg gtgtccgccc acgtgcaagc actaaggtgg ttcagcctga ccttcgataa
      661 cggtatggtc ctgaaagtct acgatgcgtc aagccaacac gaatcgtttt cgattcagcc
      721 aggcgacgta tacatctagc ggcatgtcgc ctaacgaacg gtgaagctgc cgagcgatct
      781 attgattgct cgcttcgctc gctcgcgaag gtatagcgcc taacgcgacg cgcccttcaa
      841 tagatgtgca gcttctccag cagtgcgttc gtgtcaccga cgcactccag cagatccttg
      901 ttgtgcttga tcatcttgct gcgcatgtac acacgtagcc actgctggta ggcgaaccgc
      961 tcatagcgat cgagcatgtc cgcgagcgac acgtcgcgtt gcgcatggag tcccgccagg
     1021 aacatcgcac actcgaagcc cagcgagatg gattggaagt agggggaacc catggccgaa
     1081 tcgccgacga ggaacaccgg cgagcgggtg aacgggtggt cgtcaggccc ggtgcggtgc
     1141 cactcgcgac tcgttgcatt gcgcgcccga tacaaatcga gcgggatccg gatgatctcc
     1201 aggtccccga cgatctcccc gttcgtctcc tccttgatct tgccgatgaa gcggtccatc
     1261 gactcggcca cgtgggggaa gttgccacga agccactgcc cgtcgaatcg tgacggcatc
     1321 cgcgcgtagt cctcggccga tatcttgacg atgcccgtga cgtgagtgat gctgccgtcg
     1381 tagtacgtgc ggttgacggc cgggatgaac ttgtactgcg cattctcgat gttcttggag
     1441 tacttgcagt actcgttgca gtcgtacgcc tggccgtaca ggaaggtgat gacgagcgcg
     1501 tattcgagcc ggagcttgaa cgtgttcgca tcgcccgaat catccgccgc gccggcgtgc
     1561 ggcaccaggt gatcccgtag cactgacttg gcgccagtac aatcgatgag gatgtctcct
     1621 ggcgcgagca tcgccatcgc atcctgcgcc gtgatgacag cggtggtgcg ctgcactggt
     1681 cgcgactgac gcgcatcgat caggtcactg agggaacgct cgatggtgtt gagcgggcag
     1741 aatccctgcg tccacccgcg caacagcgtc atcaggtctg acggaatgga ccgtcgcaac
     1801 gcgaggccct cgtcgatatc ctcgggatcg aagatggccg cgacgctttc ttcatcgatg
     1861 tagtcggtac agtagctcgc gaccgaatcc gcgacgaggt acgacgcgag ctgtaccatc
     1921 cgcgtccgcg agtagtcgcg tcgcttctcg tagaggtgca cggaaagccg ctccgaggat
     1981 tggagcaatg ccgtcatgag aagaccgacc gggcccgcgc cgaggatgtg aactcgcgcg
     2041 gggagaggcg tgtccgagct cgtcgagccg ttctgtcgcg gcatgggtct tctcgctccc
     2101 agcacgagtg cacgcgtgcc cgacgagggt ggaagcggcg caggaccggc tgctgctggc
     2161 gccgacgtgc cagaatatac ctgcctggga ctcttcaggg atcgtcgcac tcttgggcgc
     2221 tctggccgca gcggcgcgag gcaccgcctt cgcgtggctc gcgcggttcc cgacgcaagc
     2281 atcggcgacc agccgcctga cgaaacgctg cgactgccgg tcgctgacaa caaggaggta
     2341 gtggcagccg cggctctggc tcgtaccgtg ggccagccgc atcttcccgg tcagcaaacc
     2401 gcccgcagct cagctaagcg ttagccagcc atcaccctcc tcacggcagg aacgtattgc
     2461 gcctcaatgc tgctgcgtcc gttctgctag gtctcaccct cacgagtctc gccgtccagg
     2521 cgcaaacggc gctcgtcatc acgaggccca tcgtcgtgca cggcgacttg ccgagcgtgc
     2581 gcgtgatgga tacggcccgg gcgctcgtgt tccgcgttta ctacgacagt gtcagtcaga
     2641 aggctgccct gagcgccgtg ccgactcttg cggacatgta cgccgagctc gcccagtcca
     2701 ccggagcgcg cggcggcaag atcgagtggg cagccgtggc cttc
//
LOCUS       DATIMD010000423         3849 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_461064, whole genome shotgun sequence.
ACCESSION   DATIMD010000423 DATIMD010000000
VERSION     DATIMD010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3849
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461064"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1090
                     /locus_tag="VLI40_09305"
     CDS             <1..1090
                     /locus_tag="VLI40_09305"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSU97414.1"
                     /translation="NGGCSPAPTHVLEQMIRDLRFSNELPVDHMWRVLEPRIESVRRD
                     LAAEFGCDPEEMAITRNASEANETMIFGTDLARGDEVVFTTQNYPRMQNAWRQRERRD
                     GIVLKRVKIETPVQSTASYLEHIKAAITPRTKVIEVMHISFQTGYIAPVREIVELARP
                     HGIKVFVDGAHAFAHFPFKRDDLGCDYYGTSLHKWLYAPIGTGFLYVRRDKVKSLWPL
                     MAGGVEQEDNIRKYEEIGTHPAANHNAISVAVAFHRSIGAERKIARLRFLRDRWARQV
                     LASGDRAHMITEIGPTKSGAIGVLAIDGMDMGKLGAWLLDKHHIVTTPMVTDEFQGIR
                     ITPSIYTTLDEVDLFADRVSLAIRNGMA"
     gene            complement(1145..1528)
                     /locus_tag="VLI40_09310"
     CDS             complement(1145..1528)
                     /locus_tag="VLI40_09310"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSU97415.1"
                     /translation="MQTVQAAYAAFASNDPSVLFGAMTPDIHWCEAEGNPLSDHNPYV
                     GPQAVGEGVFGRLLAAIDNFSAAPDHFVDGGDHIIVLGRYGGTMKHTGATLDAPFCHV
                     YRFDGHRIASFHQYTDTEQWTRLMA"
     gene            1749..2246
                     /locus_tag="VLI40_09315"
     CDS             1749..2246
                     /locus_tag="VLI40_09315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97416.1"
                     /translation="MFALALLCSPAAVFAQALPPDSLFPRLVGHWVLRGSIAHQPTVH
                     DVDFEWLLGREYVQMHEVSRERAPNGSPAYEAVVLFGRDPGTGAYACVWMDNTAAAAF
                     PPEGTGHGMVIGDSISFFFQYAAPASFHTTFLYDRSKDSWQWHMDNDSSGVRRPFARV
                     TLTRR"
     gene            2247..3053
                     /locus_tag="VLI40_09320"
     CDS             2247..3053
                     /locus_tag="VLI40_09320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97417.1"
                     /translation="MSISIKYSSWTARPVFPLVAVAVALALFAPPAAAQGPTDEIQVY
                     DGGIAELGKFNLTLHTNFTPNGAKTPAFPGAVISNHSFDGAFEWAYGAKPWLELGVYL
                     PLYSITDKYGPTVNGGKLRLLFVSPKADERTFFYGANFEFSYNAARWDSYRYSSEIRP
                     IVGWHIHPWDFIFNPILDNSWSGGIAALEFNPASRVAYHVNSQWAVAAEQYSGFGPLR
                     ELLPRGQQVQQVWAAFDHYSTMNIEGGIGFGLTHASDKVTLKLMFSRDLN"
     gene            3190..>3849
                     /locus_tag="VLI40_09325"
     CDS             3190..>3849
                     /locus_tag="VLI40_09325"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HSU97418.1"
                     /translation="MSNPEDLLEQYQTDLESSDFDSEKFGIDRRQFVFFSLAAAAASA
                     LGVRPALAESSGGTVAGSLGAPQLLQQEAPFPLGNGEAPALQFQPYPGGTGALMEKLV
                     RQRGAAAFDRGTYAPEAWTGTMPTSDDDIAFLPAHQLSALIKSRRITSARLTDIYLTR
                     LKRLNPTLLCAVTIMEDQARAEAARADAEIAAGHYRGPLHGLPYGVKDLFATKGVPTT
                     WG"
BASE COUNT          733 a         1256 c         1127 g          733 t
ORIGIN      
        1 caacggcggc tgttcgcccg cgccaacgca cgtgctcgag cagatgatcc gcgaccttcg
       61 cttctcgaat gagctgcccg tggatcacat gtggcgcgtg ctcgagcccc gcatcgaatc
      121 ggtgcgccgt gatctcgccg ccgaattcgg atgcgatccc gaggagatgg cgatcacgcg
      181 caacgcgtcg gaagccaatg agacgatgat cttcggcacc gacctcgcgc gcggcgacga
      241 ggttgtcttc acgacgcaga actatccacg catgcagaac gcatggcggc agcgcgagcg
      301 tcgtgacggc atcgtgctga agcgcgtgaa gatcgagact ccggtgcaga gcacggcgtc
      361 gtacctcgag cacatcaagg ccgcgatcac gccgcgcacc aaggtgatcg aggtcatgca
      421 catcagcttc cagactggat acatcgcacc cgtgcgcgag atcgttgaac ttgctcggcc
      481 gcatggcatc aaggtgttcg ttgacggagc acacgcgttc gcacactttc cattcaagcg
      541 cgacgatctc ggatgcgact actacggcac gagcctgcac aaatggctgt atgcacccat
      601 cggcaccggc ttcctctatg ttcggcgcga caaggtcaag tcgctgtggc cgctgatggc
      661 gggcggcgtg gagcaggagg acaacatccg caagtacgag gagatcggca cgcatcccgc
      721 cgcgaaccac aacgcaatct ccgtcgctgt cgcctttcac cgctcgatcg gggcggaacg
      781 gaagatcgcg cgactgcggt tcctgcgcga ccggtgggcg cgtcaggtgc tcgcgtcggg
      841 cgatcgcgcg cacatgatca cggagatcgg ccctaccaag agcggagcca tcggcgtgct
      901 ggcgatcgac gggatggata tgggcaagct cggcgcgtgg ctgctggata agcatcacat
      961 cgtcacgaca cccatggtga cggacgagtt tcagggaatc cgcatcacac cgagcatcta
     1021 taccactctg gacgaagtgg atctgttcgc ggaccgcgtc tctctggcga tcaggaacgg
     1081 catggcgtag cgacgcgagc cgacgccgcg tcgcattgcc aatgcaggct tgcgcgatct
     1141 tcgactacgc catcagccgc gtccactgct cggtatccgt gtactgatgg aacgacgcga
     1201 tccggtggcc atcgaagcga tagacgtggc agaagggcgc gtccagcgtg gcgcctgtgt
     1261 gcttcatcgt cccaccgtag cggccgagca cgatgatatg gtcgccgccg tccacaaagt
     1321 gatcgggcgc cgcgctgaag ttgtcgatgg cggcaagcaa ccggccaaac acgccttcgc
     1381 ccaccgcctg cgggccgacg tagggattgt ggtcggacag cgggttgccc tcggcttcgc
     1441 accaatgaat gtcgggcgtc atcgcaccga acagtaccga aggatcgttg ctcgcaaacg
     1501 cggcataagc cgcctgaacg gtctgcactc tcgacatggg ctgctccgga accggatgat
     1561 aatttcgatc gggacgcgga gtcataacat caatccgtgc gttcaacaag aggcgctgca
     1621 cctcggcgtc cgcgattgac gtcgatcgcc agagacagca agattcacac gaggcttttc
     1681 ctacagcctc atcaggtggg caacagggtt tgaactccgc cacatgtgga aacatgctca
     1741 aacaatcgat gtttgctctc gcactactgt gctcccccgc cgcggtgttc gcccaggcgc
     1801 tacctcccga ctcgcttttt ccacgcctgg tgggtcattg ggtcctgcgc ggctccattg
     1861 cgcaccagcc aaccgtccac gatgtggact tcgagtggct gcttggccgc gagtacgttc
     1921 agatgcacga ggtatcgcgt gagcgagcgc cgaatggcag tcctgcctac gaagccgtgg
     1981 tactcttcgg acgcgacccc gggaccggcg cttacgcgtg cgtgtggatg gacaacaccg
     2041 ccgcagcggc cttcccgccc gagggtaccg ggcatgggat ggtcatcgga gattccatct
     2101 ccttcttctt ccagtacgcc gcccctgcca gttttcatac gacgttcctc tacgaccggt
     2161 cgaaagattc ctggcagtgg catatggaca acgacagttc tggagtgcgc agaccattcg
     2221 cacgcgtcac gcttacccgg cgataaatgt cgatctcaat aaaatattcg tcgtggacgg
     2281 cgcgtccggt atttccgctc gtggccgtag ctgtcgctct cgccctgttc gctccccctg
     2341 ccgccgcgca gggccccacc gatgagatcc aggtctacga cggcggcatc gcggagctcg
     2401 gcaagttcaa tctcaccctg cacacgaact tcacccccaa cggcgcgaag acgccggcct
     2461 ttcccggggc cgtgatctcg aaccattcgt tcgacggcgc gttcgagtgg gcgtacggcg
     2521 ccaagccctg gctcgagctc ggcgtctatc tgccgctcta cagcataacg gacaagtacg
     2581 gtcccacggt gaacggcggc aaactgcgtc tgctcttcgt ttcgccgaag gccgacgagc
     2641 gcacgttctt ctacggcgcc aacttcgagt tcagctacaa cgcagccaga tgggattcgt
     2701 accgctacag ctcggagatc cgtccgatcg tcggctggca catccatccg tgggacttca
     2761 ttttcaaccc gatcctcgac aattcctgga gcggcggaat cgccgcactg gaattcaatc
     2821 ccgcgtcgcg cgttgcgtac cacgtcaact cgcagtgggc ggtggcggcc gagcaatact
     2881 cgggattcgg tccgctgcgt gaactacttc ctcgcggcca gcaggtccag caggtctggg
     2941 ccgccttcga tcactactcc acgatgaaca tcgaaggtgg tatcggcttt ggtctcaccc
     3001 acgcgtccga caaggtcacg ctcaagctga tgttttcacg cgatctgaac tagtccacgt
     3061 tcgagctgcg ctcggcgcct ctacgtgttc cagtgcgtgt tcaatccacc ccttaccaat
     3121 tcgtgttttc ggcgcgattc tctgcatgcg taaatcacac tttccattcg ccgccaccgg
     3181 agcactgcag tgagcaatcc cgaagacctg ctggaacaat atcagaccga tctcgaatct
     3241 tccgacttcg actcggaaaa attcgggatc gatcgccgtc agttcgtctt cttctcactc
     3301 gctgccgcgg cagcctctgc gctcggcgtc aggccggcac tcgcagagtc cagcggcggg
     3361 actgtcgctg gctcactcgg cgcaccgcag ctcctccaac aggaagcgcc ctttccgctc
     3421 ggcaacggtg aagctccggc gctccagttt cagccatacc ccggcggcac cggcgcgctc
     3481 atggaaaagc tcgtgcgcca acgcggcgct gcggcgttcg atcgcggcac atacgcgccc
     3541 gaagcgtgga ctgggacgat gccgacctcg gacgacgaca tcgcctttct ccccgcgcac
     3601 cagctttcgg cgcttatcaa atcccgacgg atcacatcgg cgcgcctcac cgacatctac
     3661 ctcacacgac tcaagcgtct caatccaact ctgctctgcg cggttaccat catggaagac
     3721 caggcgcgcg ccgaggcggc gcgtgctgat gcggagatcg ccgcaggtca ttatcgcgga
     3781 ccgctgcacg gacttcctta cggtgtaaag gatctatttg cgaccaaggg agtgcccact
     3841 acgtggggt
//
LOCUS       DATIMD010000424         4543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4213991, whole genome shotgun sequence.
ACCESSION   DATIMD010000424 DATIMD010000000
VERSION     DATIMD010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4543
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4213991"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1294)
                     /locus_tag="VLI40_09330"
     CDS             complement(<1..1294)
                     /locus_tag="VLI40_09330"
                     /inference="COORDINATES: protein motif:HMM:NF039283.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HSU97419.1"
                     /translation="MTATSMRSSHASSSTSAGATSAGATSAGATSTADQAPAAWSSAA
                     TSAYPPISAYGLIGDMRTAALVGLNGSIDWCCLPEFPSSSTFAAILDESRGGRFQIVP
                     TGTHTSEQRYLPATNVLVTAFHDSTGTLELCDFMPVGPEGRRPGFAEIHRQIRCTRGQ
                     IDMSICFAPRFDYGVKPAHIIPRKNGLLATDDDNEAAALSAPPDLWWQVGEMGASAQL
                     RMRAGESAWFVLRYDDDEVLPVASYKSQERLQQTIAFWDGWVATLKYEGTHRAVVERS
                     ALTLKLLCYEPTGAIIAAPTTSLPEEIGGERNWDYRFIWLRDASFTLDALQGLGQHEE
                     ASAFMAFLRRIMRKATDSHLQIMYGVDGSRDLPERTLPHLSGYRNSAPVRVGNAAVNQ
                     LQLDVYGEILNTAYRWSRSATVGEGTWWSLSRLVDWIAV"
     gene            complement(1291..2079)
                     /gene="otsB"
                     /locus_tag="VLI40_09335"
     CDS             complement(1291..2079)
                     /gene="otsB"
                     /locus_tag="VLI40_09335"
                     /EC_number="3.1.3.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004805 - trehalose-phosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
                     /protein_id="HSU97420.1"
                     /translation="MTHAEPAEIARRLRGKPLIIMLDIDGTLCDIVERPDAAGIPGTA
                     RASLRALIARRGRGVHVAFVTGRSVADALRMLAIDGVTIYGNHGMEHLSESGNITGPE
                     GWEHAGLALRQARRDLDAVVEQFPGTSIEDKEFSLSLHFRGMDMEMFPELAARVAGIA
                     HARGVTVAPGKCVFNILSDASVTKGDAVLDIVHALGGESPDASILFVGDDVTDEDGFR
                     ELRAFPQATTVHVGSPAAKSEARFSLNNPGEVHELLALLAKAES"
     gene            complement(2084..3583)
                     /locus_tag="VLI40_09340"
     CDS             complement(2084..3583)
                     /locus_tag="VLI40_09340"
                     /EC_number="2.4.1.15"
                     /inference="COORDINATES: protein motif:HMM:NF013173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate
                     synthase (UDP-forming) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HSU97421.1"
                     /translation="MQSKFPAILDRPLILLSNREPYEHVHKPNGIEVRFPAGGLVSAL
                     DPILRRTHGTWVAWASGNADRTVADDAGRVAVPPGDPSYTLRRVWLSESDVEGFYLGF
                     ANSALWPLCHLFVSKVDIRRSDWESYERANRMFGAAVVQEAERVGGAPMVWVHDYHFA
                     LAPALIRPHVPDALIHQFWHIPFPPPDVFGILPVGVQDSLLRGLLGNDLIEFQTDGFA
                     WNFMDCVARTLPDVQVNLDQGIIHLDGRETRVGAFPISIDVTEWQRLAALPHTVDVCR
                     TLRQRYAPGDRQLVVSVDRMDYTKGIERRLRALEHMWTDTPERRGTFTMLIVATPSRT
                     DIPAYAKLERDVLEAIERLNDEFRTLDWTPIVLVHENVDADLLAAVYCAADVCVVSSL
                     QDGMNLVAKEFIACRTDGNGVLVLSRFAGASDELNAALLVNPFFIDAFADTLAVALDM
                     PRHERVERMTALRDRVANATIDDWLDAILAAAASTDRAAEGGNRNPVTS"
     gene            complement(3647..>4543)
                     /locus_tag="VLI40_09345"
     CDS             complement(3647..>4543)
                     /locus_tag="VLI40_09345"
                     /inference="COORDINATES: protein motif:HMM:NF040246.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HSU97422.1"
                     /translation="LHCNGARVNGRMAPLSRELKNSDTVEIIASPSARPNRDWLAHVR
                     TGRARHRIKQRLRMEEQKASIKLGREMIDKEAKRRRVLRPTDEELDTAAKTLKLNDRG
                     HLVSAVGQGELSGRDVIRSLHPEIDTGLEPPRPNRLERLVDRVRGTGRGVRIQGADGL
                     LVRYAQCCQPVPGDPVSGYVTRGRGVSIHRADCPNLMLLDDEPERRLEIDWQEVQGER
                     FLVRLAVEASDRRGLYADIATAVSETKTDIRSFELRSEDARVFGMIEVQVENLPHLRK
                     TLRAIRRVKGVTEVSRREQTAE"
BASE COUNT          839 a         1514 c         1371 g          819 t
ORIGIN      
        1 gaacggcgat ccagtccacc agacggctga gcgaccacca cgtgccttca ccaacggtcg
       61 cactgcgact ccacctgtac gcggtgttca gaatctcgcc gtacacatcc agctgcagct
      121 gattcacggc agcgttgccg acgcgcactg gcgcggagtt acgatacccc gagagatgcg
      181 gcagcgtgcg ctccggcaga tcgcgcgacc cgtcgacgcc atacatgatc tgcaggtgcg
      241 agtcggtggc cttgcgcatg atgcgcctca ggaacgccat gaacgcgctc gcctcttcgt
      301 gctggccgag cccctggagt gcatctagcg tgaacgacgc gtcgcgcagc cagatgaacc
      361 gataatccca gttgcgctca ccgccgatct cttccgggag cgacgtcgtc ggtgcggcta
      421 tgatcgcgcc ggtcggctcg tagcacagca gcttgagcgt gagcgcggac cgctcgacga
      481 cagcccggtg agtgccctca tacttgagcg tcgcaaccca tccgtcccag aacgcgatgg
      541 tctgctgcaa tcgctcctgc gacttgtagg acgcaaccgg gagcacttcg tcatcgtcat
      601 accgcagcac gaaccatgct gattcgcccg cgcgcatccg cagctgtgca ctcgcgccca
      661 tctcccccac ctgccaccac agatcgggcg gcgcggagag tgcggccgcc tcgttgtcgt
      721 cgtccgtcgc aagcaagccg ttctttcgcg ggatgatgtg cgctggcttg acgccgtaat
      781 cgaagcgcgg agcaaagcag atcgacatgt cgatctggcc gcgcgtgcac ctgatctgcc
      841 ggtgaatttc cgcgaatcct gggcggcgtc cttcgggacc gacgggcatg aagtcgcaca
      901 gctcgagcgt gccggtgctg tcatgaaatg cggtaacgag cacgttggtc gcaggcaggt
      961 aacgctgctc gctcgtgtgc gttccggtgg gaacgatctg aaagcggccg ccgcgcgact
     1021 catcgagaat cgccgcgaat gtcgatgacg acgggaactc gggaaggcag caccaatcga
     1081 tcgagccgtt gagaccgacg agcgccgccg tgcgcatgtc gccgatcagc ccgtacgccg
     1141 agatcggcgg ataggcggac gtcgccgcgg aagaccacgc agcgggtgcc tgatcggccg
     1201 tggaggtcgc tcccgcagac gttgcccccg cagatgtcgc tcccgcagac gtcgatgacg
     1261 acgcgtgcga cgaccgcatc gaagtagcgg tcacgattcc gccttcgcga gcagcgccag
     1321 aagctcgtgg acttcgcccg gattgttcag tgaaaatcgc gcctcggatt ttgcggcagg
     1381 cgagcctacg tgcacagttg tcgcctgcgg aaacgcgcgc agctcccgga aaccgtcctc
     1441 atcggtcacg tcgtcaccaa caaatagaat ggatgcatca ggtgattcgc cgccaagcgc
     1501 gtgcactatg tcgagtacgg catcgccctt ggtcacactc gcatcggaca agatattgaa
     1561 tacgcacttg cccggcgcga cggtgacacc gcgcgcatgc gcgattccgg cgacgcgcgc
     1621 cgcgagctcc ggaaacatct ccatgtccat tccgcgaaag tgtagcgaca agctgaactc
     1681 cttgtcctca atactggtgc cgggaaactg ttcgacgacc gcgtccaggt cccgcctcgc
     1741 ctgacgcagt gcgagacctg catgttccca cccctccggc cctgtaatgt ttcccgactc
     1801 cgaaaggtgc tccattccgt ggttcccgta gattgtcacg ccatcgatag ccagcatgcg
     1861 aagcgcatcc gcgacggatc ttccagtgac aaacgcaaca tgcacgccgc gcccgcgccg
     1921 ggcgatgagg gcgcggagcg acgcacgcgc ggtcccgggg atgcccgccg cgtcaggacg
     1981 ttcgacgatg tcacacagtg taccgtcgat gtcgagcatg attatgagtg gcttcccccg
     2041 cagccgccgc gcaatctcag ccggctccgc atgcgtcatg acgtcacgaa gtcacagggt
     2101 ttcggttccc accctcggcc gccctgtccg tcgacgccgc cgccgcaaga atcgcgtcga
     2161 gccagtcatc gatggtcgca ttcgcaacgc gatccctgag cgctgtcatt cgctccacgc
     2221 gctcatgccg cggcatgtcc agcgccacgg cgagggtatc ggcgaacgca tctatgaaaa
     2281 atggattgac gagtaatgca gcgttcagct cgtcggaggc gccggcgaaa cggctcagaa
     2341 ccagcacacc gttgccgtcg gttctgcatg cgatgaactc cttggccacg aggttcatcc
     2401 cgtcctgaag tgacgacacg acacacacat cagccgcgca gtaaaccgct gcaaggagat
     2461 cggcatcgac gttctcgtgc acgagcacga ttggtgtcca gtcgagtgtg cgaaattcgt
     2521 cgttgagtcg ctcgatcgcc tcgagcacgt cacgctcgag cttcgcgtaa gcgggaatgt
     2581 cggtgcgcga tggcgtcgcg acgatcagca tggtgaacgt cccgcgccgc tccggtgtgt
     2641 cggtccacat gtgctccagc gcgcgcagtc gtctttcgat tcccttggtg taatccatcc
     2701 ggtcgacgct caccaccagc tgtctgtcgc cgggtgcgta acgctgccgc agcgtcctgc
     2761 acacatccac tgtgtgcggc agcgcagcga gtctctgcca ctcggtgacg tcgatgctga
     2821 tgggaaacgc accaacgcgc gtctcccggc catcaagatg tatgatgccc tgatcgagat
     2881 tcacctggac gtcgggaagc gtgcgcgcga cacaatccat gaaattccac gcgaagccgt
     2941 ccgtctggaa ttcgatgagg tcgttgccca gcaatccgcg cagcaatgag tcctgcacac
     3001 cgacaggcag aatgccgaag acgtcgggcg gcggaaaagg gatgtgccag aattgatgga
     3061 tcagtgcgtc gggcacatgt ggccgtatca gcgccggcgc gagcgcgaaa tggtagtcgt
     3121 gcacccacac catcggcgca ccgcccactc gctcggcctc ctgcaccacc gccgcgccga
     3181 acatccggtt tgcgcgctcg taactctccc agtcgctccg ccggatatcg accttgctca
     3241 cgaagagatg gcacagcggc cataacgcac tgttcgcgaa gcccagataa aaaccctcga
     3301 cgtcgctctc ggacagccac acgcggcgca aggtgtagga tggatcgccg ggtggcactg
     3361 ctacccggcc ggcatcatcg gcaactgtgc gatcggcatt tccggatgcc caggcgaccc
     3421 acgttccgtg tgtacgccgg aggatcggat ccagcgccga gacgaggcca cccgcaggaa
     3481 atcgcacttc gattccgttg ggtttgtgta cgtgctcgta cggctcgcgg ttggaaagca
     3541 gtatgagcgg acgatccaga attgcgggaa atttggattg catctacgtc cctacgtgag
     3601 cacgcaccat gcctgtgcgg ctcccattcg cggcgaacgg cgcgatctac tctgccgtct
     3661 gctctcgccg cgacacttct gtgacaccct tcacgcgcct gattgcgcgc agcgtcttgc
     3721 ggagatgtgg aaggttctcg acctggacct cgatcatccc gaacacgcgc gcatcctcgc
     3781 tgcgcagctc gaaacttcgg atgtcggtct tcgtttcgct gacggcggta gcgatgtccg
     3841 cgtacagtcc gcgccggtcg ctcgcctcga cggcgagccg cacgaggaat cgctcgccct
     3901 ggacctcctg ccagtctatc tcgagcctgc gctccggctc gtcgtccagc agcatcagat
     3961 tgggacagtc ggcgcggtga atactcacgc cgcgtccgcg cgttacatac ccggagaccg
     4021 gatcacccgg caccggctga caacattgtg catagcgcac gagcaacccg tcggcgccct
     4081 gaatacgaac gccgcgaccg gtaccgcgta cgcgatccac caaccgctcc agccgatttg
     4141 gacgaggcgg ctccagcccg gtgtcgattt ccggatgcag gctccggatg acgtcgcgac
     4201 cgctcaactc gccctgccca acggcgctca cgagatgacc gcggtcgttg agcttgagcg
     4261 ttttcgcagc cgtgtccagc tcctcgtcgg tcgggcgaag cacacggcga cgctttgcct
     4321 ccttgtcgat catttcgcgg ccgagcttga tcgacgcctt ctgctcctcc atgcggagcc
     4381 gctgcttgat gcgatgccgt gcacgacccg tgcgcacgtg cgcgagccag tcccggttgg
     4441 gacgcgccga cggtgacgcg atgatctcga cggtatcgga attcttgagc tcgcgcgaca
     4501 gcggcgccat gcggccgttc acgcgcgcac cgttgcaatg caa
//
LOCUS       DATIMD010000425         2333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5085771, whole genome shotgun sequence.
ACCESSION   DATIMD010000425 DATIMD010000000
VERSION     DATIMD010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5085771"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1092)
                     /locus_tag="VLI40_09350"
     CDS             complement(<1..1092)
                     /locus_tag="VLI40_09350"
                     /inference="COORDINATES: protein motif:HMM:NF015534.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Type 1 glutamine amidotransferase-like
                     domain-containing protein"
                     /protein_id="HSU97423.1"
                     /translation="MIEAAHAFGAVRKYFLVRGCVFIIHRIIAATLLASAVTQAQTPS
                     APRVGPARGTVIVVGGGALGQEITDEFIKAAGGPDALIIDVPNAGGATSYGQDAAGAR
                     LWRNAGARNVRVLFTTDRKLADADSFVAVLKHAGGVWFEGGRQFHLVDAYAGTRTEQA
                     FRDVLARGGVVGGSSAGASILGDFLVRGAPSNDNLIMAYPGYEKGFAYLRGVGIDQHV
                     VARERLADLADSIMTTHPNLLGISEDEGTAWVVRGDTATIIGRDKAFVYGGRDATDSG
                     KPFLTLYPGDRYDLGARHVMHRATDDSRVSAAFVDSLFRKYDDPAAGGATVLVAQNGE
                     VFIDRSYGVPPQIRYMPTTTLPQFQLGDMS"
     gene            complement(1103..2134)
                     /locus_tag="VLI40_09355"
     CDS             complement(1103..2134)
                     /locus_tag="VLI40_09355"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HSU97424.1"
                     /translation="MRDLLAVPAGRRTAIERLARELRAGRSIVLSTHINSDGDGCGSE
                     TGLARMLAQRGMTVTIVNPTPWPEMFRFLLGDDVRMVELSNGGADVMRKADVVIVLDI
                     ADLRRLGRLADVVRSLTVPKLVIDHHVPSDDPPSNEILSDTTACATGELVYDVGLVLG
                     FDITPAIANSLYVALVTDTGGFRFSNTSPRCHAVAAQLLAEGVEPEEMYQRIYASMPV
                     GRLTLLREALATLEVDPTYGLTWISVPAGATEKHNVRPEDLEGIAEHARSVAGTRMAI
                     FFRDLGHNRVKISFRTTRGVDANEFAHQFGGGGHVKASGAMVEGGLEDVQKRVIAAAR
                     AYLEPATAK"
     gene            complement(2127..>2333)
                     /locus_tag="VLI40_09360"
     CDS             complement(2127..>2333)
                     /locus_tag="VLI40_09360"
                     /inference="COORDINATES: protein motif:HMM:NF025274.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease C-terminal domain-containing
                     protein"
                     /protein_id="HSU97425.1"
                     /translation="QPNLERPFRTPLVPLVPILGIISCGALMASLPVDTWIRLIVWMA
                     LGLLIYFLYGKGHSKLGRAEKIGA"
BASE COUNT          450 a          767 c          694 g          422 t
ORIGIN      
        1 ggacatgtcg ccgagctgga actggggcag cgttgtggtc ggcatgtatc tgatctgcgg
       61 cggcacgccg tacgatcgat cgatgaatac ctcgccgttc tgcgcgacga gaactgtcgc
      121 gccgccggca gcgggatcat cgtatttccg gaagagcgaa tcgacaaacg cagcactcac
      181 gcgtgaatcg tctgtcgccc gatgcatcac gtgacgagca ccgaggtcgt acctgtcacc
      241 cggatataac gtgagaaacg gcttgccaga atcggtcgcg tccctgccgc cgtacacgaa
      301 cgccttgtct ctgccgatta tcgtcgccgt gtcaccccgc accacccacg ctgtaccttc
      361 atcctcggag atcccgagca gattcgggtg cgtcgtcatg atcgagtccg ccaggtcggc
      421 caaccgctcg cgcgcaacga cgtgttgatc gattccaacg ccacgcagat acgcgaatcc
      481 cttctcgtat ccgggatagg ccatgataag gttgtcgttc gatggcgcac ctcgaacgag
      541 aaagtcaccg agaatggatg cgccggccga cgagccgccg acaacgccgc cgcgagcgag
      601 gacgtccctg aacgcctgct ccgttctggt acccgcatat gcatcgacga gatggaactg
      661 tcgtccgccc tcgaaccata cgccacctgc atgcttgagc accgcgacga acgaatccgc
      721 gtcggcaagc ttccgatccg tcgtgaacag aacgcgcacg ttcctggcgc cggcgttcct
      781 ccagagtcgc gcgcctgctg cgtcctgtcc gtacgacgtt gcgccgcctg cgttcggtac
      841 gtcgatgatc agcgcgtccg gtccacctgc ggccttgatg aactcgtcgg tgatctcctg
      901 cccgagcgcg ccgccgccaa ccactatcac tgttccgcgc gccggcccga ccctcggcgc
      961 ggatggtgtc tgcgcctgag tgacggcaga tgccagaagt gtcgccgcga ttatgcgatg
     1021 aatgatgaac acacagcctc tcaccagaaa gtatttccga acggcgccga atgcgtgcgc
     1081 cgcctcgatc accggcgcgt cgctactttg cggtagcggg ctccaggtac gctcgcgccg
     1141 ctgcgatcac tcgcttctgc acgtcttcga gtccgccctc gaccatcgcg ccggacgctt
     1201 tcacatgccc gccgccgccg aactggtgcg caaattcgtt cgcgtccaca ccgcgcgtgg
     1261 tacggaacga gatctttacg cggttatgac caagatcgcg gaagaagatc gccatgcgtg
     1321 ttcccgcgac agatcgcgca tgctccgcga tcccctcgag atcctcgggc cgaacgttgt
     1381 gcttctcggt cgctccggct ggaactgata tccacgtcag accgtaggtc ggatcgactt
     1441 cgagcgttgc aagtgcctcg cgcagcagcg tgagacgccc gactggcatc gacgcgtaaa
     1501 tgcgctggta catctcttcc ggctctacgc cttcggcgag cagctgcgcg gccaccgcgt
     1561 gacaccgcgg cgacgtgttg ctgaaacgga agccaccggt gtccgttacg agcgcgacat
     1621 acagtgaatt cgcgatagcg ggggtgatgt cgaagccgag cacgagcccg acgtcgtaca
     1681 cgagctcgcc ggtcgcgcac gcggtcgtat cggacagtat ctcattgctg ggcgggtcat
     1741 cgctcggtac atggtgatcg atcaccagtt tggggactgt gagcgagcgc acgacatcag
     1801 cgagtcttcc aagtctgcgg agatcggcga tgtcgaggac gatgaccacg tcagccttgc
     1861 gcatcacatc cgcgccaccg ttgctcagct ccaccatacg cacgtcgtcg cccagcagaa
     1921 agcggaacat ctcgggccag ggcgtcggat tgacgatggt aaccgtcatt ccgcgctgcg
     1981 cgagcattcg cgccaggccg gtctccgagc cacagccgtc accgtcggag ttgatgtggg
     2041 tcgacaaaac gatcgagcgt cccgcgcgca gttcgcgcgc gagacgctcg attgccgtcc
     2101 ggcggccagc cggaacagct agaagatcac gcaccaattt tttcggcgcg cccgagcttc
     2161 gaatgaccct tcccgtacag gaaatagatc aggagaccga gcgccatcca cacgatcaga
     2221 cgaatccatg tgtcaacagg cagcgatgcc atcagggcac cgcagctgat gataccaaga
     2281 atcgggacga gcggaacgag cggcgtacgg aacggacgct ccagattcgg ctg
//
LOCUS       DATIMD010000426         2902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5660782, whole genome shotgun sequence.
ACCESSION   DATIMD010000426 DATIMD010000000
VERSION     DATIMD010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2902
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5660782"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1157)
                     /locus_tag="VLI40_09365"
     CDS             complement(<1..1157)
                     /locus_tag="VLI40_09365"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSU97426.1"
                     /translation="MRDPSGVDGSSRDDTSGDARIDLHVSWRIAALVWVVPALFSAMI
                     SYAFTRMTGNPVAFWNAVVINIPIWYFWAFATPVIFWLGRLARIGWPVSPGAVVIHLL
                     ASMVAALIDVICGMSIASLLGVASVGDHVVQRYLINAMSWLLTGVLTYWAVLGAGYAL
                     EFDRRYRRQRLRSSELATQLARAQLSVLRNQLHPHFLFNTLNTAVSLVRVNRTETAVR
                     VLTDLGDILRRLLQNAPDQEIVLRDELAFLSAYVAIEKIRFADRLTVRMHVPDDVMNA
                     LVPNLLLQPLVENAIRYGVGNSNAAGHIDVSARRHDSTLILQVRDDGPGLPDQTHASG
                     AAGAGGAGGVGLTNTQERLQQMYGPLHEFLMGNRATGGCEVTITIPFQLAT"
     gene            1423..>2902
                     /locus_tag="VLI40_09370"
     CDS             1423..>2902
                     /locus_tag="VLI40_09370"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HSU97427.1"
                     /translation="MTARSSLIPPAVMAMLLSATVARAQRLPVLSVDSVIALNVASRG
                     GLARLMNVHTQEMRGHISFAAGPPHQFSVDMARPGRIRTEITLDGGRLIQAYDGRIAW
                     MVNPAGGAGGDTAAHVLPEGEARNIAAGGDMDGPLVDYARKGNRVTLAGIDTADGRPA
                     YRLEVVTAAGLRDTYYIDTVSHLQTKWQGHRVMSGEPVVFVSYFRDYRPVDGVMIAFR
                     IDSGTEGRPGGQTITIDTVRLNAPVSDDEFLMPGRGSVVEDSLYSPALGVSKKFLVYL
                     PRSYARDSSLRYPVAYYLHGTGGNERSWVAGLAIDSVLDSLVTAGMPEMIIVMPDGDN
                     GFYHTWRTSPDYQTCLRRRAALLGGELPTDYCVRHMRYDDYIAHDLVARVDSVYRTIA
                     DGRHRAVAGLSMGGYGAVYLPLKYPGVFAAGASLSGAGLALMRVGGYPDPSPVREAKS
                     IDDLHAAWASTWPDMVQEIGDNIESWRNVDPVWMVRRAVAEHG"
BASE COUNT          543 a          929 c          918 g          512 t
ORIGIN      
        1 ttcgtggcaa gctgaaatgg gatcgtgatc gtcacttcgc aaccgcccgt cgcgcggttt
       61 cccatcagga attcatgcaa cgggccgtac atctgctgca gcctctcctg agtgttcgtc
      121 aatccaacgc cgcccgcgcc gcccgcgccg gctgcgccgc tcgcgtgtgt ctgatcgggc
      181 agacccggcc cgtcgtcgcg cacctgcaga atcaacgtgc tgtcgtgccg gcgcgccgag
      241 acatcgatgt gtcccgctgc gttgctgttg ccgacgccgt agcgaatggc gttctcgacg
      301 agcggctgaa gcaggaggtt cggcacgagc gcgttcatga cgtcatccgg cacgtgcatt
      361 cgcacagtga gccggtcggc gaatcgtatt ttttcgattg ccacatacgc gctcagaaag
      421 gccagctcgt cgcgcaggac aatttcctga tccggcgcgt tctgcaggag ccgtcgaaga
      481 atgtcgccaa ggtccgtgag cacccgaacc gccgtctccg tccgattgac gcgaacgagc
      541 gagactgcgg tgttcaacgt gttgaacagg aagtgcggat gcaactggtt gcgcaggacg
      601 gacagttgcg cgcgcgccag ctgagttgcg agctcggacg agcgcaatct ctgcctccgg
      661 taccttcgat cgaactcgag tgcgtaaccg gcaccgagca ccgcccagta cgtgagcact
      721 ccggtcagga gccacgacat cgcgttgatg agatagcgct gaaccacatg atcgccaacc
      781 gaagcaacgc cgagcagcga tgcgatgctc attccgcaga tgacgtcgat caacgcggcg
      841 accatgctgg cgagaagatg aatcactacc gcgcccggcg agaccggcca tccgatgcgc
      901 gcaagccgtc ccagccagaa gatgaccgga gtcgcgaacg cccagaagta ccagatcgga
      961 atgttgatga cgaccgcatt ccagaatgca accgggttcc cggtcattcg tgtgaacgcg
     1021 tacgagatca ttgcgctgaa aagcgccggg acgacccaca ccagcgctgc tattcgccag
     1081 ctcacgtgca ggtcgatgcg cgcatcaccg gacgtatcat cgcgcgatga gccatcgacg
     1141 ccagaaggat cgcgcaaagc tgatctccga atggtgaccg catggtgacc gccgctcggg
     1201 tggcggcatc gtgtccgtta aagctatccg atcgcctgcc gcgcgctgcg cagatcgcag
     1261 caggaacgtg ccggttcgct gcgcttggca cagctggacc tcgcggaccg cagttgcgcg
     1321 attagatacg cgttggacag ccgctctcgc aaccacccgt ccctcgggta tggcgcccgt
     1381 ggacagacgc ccattggcag acacaatcca gtcggagaat cagtgaccgc tcgcagctct
     1441 ttgataccgc cagcagtgat ggccatgctt ttgtcggcga cagtcgcgcg tgcgcagcga
     1501 ctaccggtac tatcggtgga ttcggtgatc gcactgaatg tggccagccg cggcggcctc
     1561 gcgcgtctca tgaacgtgca cacgcaggag atgcgcggcc acatatcatt cgcggccggc
     1621 ccgccgcacc agttctcggt cgacatggcg cggccgggcc ggatacgcac cgagatcacc
     1681 ctcgatggcg gccggctgat tcaggcctac gacggcagga tcgcctggat ggtcaatccg
     1741 gccggcggtg ccggaggcga cactgcggcg cacgtgctcc ccgagggcga agcgcgcaac
     1801 atcgccgccg gtggcgacat ggatggccca ctggtggact acgcccggaa aggcaaccgc
     1861 gtcacgctgg ccggtatcga tactgcggat gggcgtcccg cgtaccgact cgaagtcgtg
     1921 actgctgccg gcttgcgcga cacatactat atcgacactg tctcccacct ccagaccaag
     1981 tggcaaggcc acagagtaat gagtggcgag cccgtcgtgt ttgtatcgta ctttcgcgac
     2041 taccggccgg tcgacggagt catgatcgca ttcaggatcg actccggcac ggaagggcga
     2101 ccgggtggtc agaccataac catcgacacc gtgcgattga acgcgccggt gtcggacgac
     2161 gagttcctca tgcccgggcg cggcagcgtc gtagaggatt cgctgtactc tccggcgctc
     2221 ggcgtctcga agaaattcct cgtttatctg ccgcgatcct atgcacgaga cagcagcctg
     2281 cgctatccgg tcgcgtacta tctgcacggc acgggcggaa acgagcgcag ctgggtcgcc
     2341 ggcctcgcca tcgattcggt tctggattcg ctcgtcacgg ccgggatgcc ggagatgatc
     2401 atcgtcatgc ccgacggcga caacggcttc taccacacgt ggcgaacgtc gcccgactat
     2461 cagacatgtc tccgcaggcg tgcggctctc ctcggcggcg agctgccgac tgattactgc
     2521 gtgaggcaca tgcgctacga cgactacatc gcgcacgacc tcgtagcgcg ggtggattcc
     2581 gtttaccgca ccatcgccga tggccggcac cgcgcagtcg ctggactcag catgggtggc
     2641 tacggcgccg tgtatctacc tcttaagtac ccgggcgtat ttgctgcggg cgcaagcctg
     2701 tctggcgcag gcctcgcgct gatgcgggtc ggcggatatc ccgacccgag tcccgtccgc
     2761 gaggcgaagt cgattgacga cctgcacgcg gcgtgggcca gcacctggcc ggacatggtg
     2821 caggagatcg gcgacaacat tgagagctgg cgcaatgtgg accctgtctg gatggtgcga
     2881 cgtgccgtgg ctgagcacgg gc
//
LOCUS       DATIMD010000427         4081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3062719, whole genome shotgun sequence.
ACCESSION   DATIMD010000427 DATIMD010000000
VERSION     DATIMD010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4081
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3062719"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(115..1101)
                     /locus_tag="VLI40_09375"
     CDS             complement(115..1101)
                     /locus_tag="VLI40_09375"
                     /inference="COORDINATES: protein motif:HMM:NF024973.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BatD family protein"
                     /protein_id="HSU97428.1"
                     /translation="MIVGLLLFAQVGVVQFQTQISPDTVYVGQQVNYDAVTLVDDVAR
                     RRLRANPVFTPADVAGVTIYDFPFDTSAISTVTVNGAPYRRYAYHRALFPLLPGTYTV
                     PAATLQYSLPDGDDYFSPPRTYSTMSAPQSFTAVALPLSGKPVGFIGAVGEFRDTLRT
                     DGSSLRVGDPFTVTMRLSGAGNLRLLARPTLDIDWATTVPGAERVYWDSAGTVVRGSK
                     EFDWVVTPKIAGEMVLPEVRYDFFNPTSRRYEYATTPSLRLTVAAATGAVADTTAVPR
                     DTIGDTPFPAIAKLARSNALVIAIAATAIAVILFGILLLSRRRGGGDQDDEE"
     gene            complement(1098..2654)
                     /locus_tag="VLI40_09380"
     CDS             complement(1098..2654)
                     /locus_tag="VLI40_09380"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HSU97429.1"
                     /translation="MIRFLDWPWAVAFAVVLPLAGIFALIVGRRSRIHRLSLLGTRTM
                     LARLAPLGTRRGPWHNVRVVVALLLLGAAFAGPRWGQESSVVTRSGADVVLALDASLS
                     MTATDERPSRLAKMKQVVRQLRALSPDDRFAMIAFAGKSYILTPLTTDDGALALYLDN
                     LDPTVVGEAGSSMSSALRQATALLSLGKGSGNKAVVLMSDGEAFEPLSDVAAAAARAR
                     DAGIEVVTVGFGTPQGSTIPIVENGATTVKRDENGQVVVTQYHPEYLRTAADSAGGVF
                     VPAEATNKAEAVRSAIQRLKTEAHAVQTGRDLTPRFQWFLAPALLLLLLDSLLGLRSR
                     RRLGAAAIAAAGTLAACSPNAKTELLAYNRGTTLLSRDSLAAAVPILDSVEARHGPMA
                     FNATFNAGWAYLVTGRKLHGDTAAQPLDSALAHYRRALTLTPDDTDAKWNYELALRVH
                     KPSSGGGGGGGGGGGGAQAPQPKPSGGGALGSQQADAVLNNAAREEQDVQGRKQQKNV
                     PQPPPHGKDW"
     gene            complement(2651..3640)
                     /locus_tag="VLI40_09385"
     CDS             complement(2651..3640)
                     /locus_tag="VLI40_09385"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HSU97430.1"
                     /translation="MQLPSVQLVTPLALLLLLLLPIWWIIRARKRPPAITFSRTSTLA
                     RGPHVGSAVERMLFILRNVVLAALVLALARPRGVGHSENVTSEGINIVLVIDLSSSML
                     AEDFQPSNRIAVAKATVKRFIAGRTSDRIGLVAFAAEALTQVPLTTDYPVVMQAVDNL
                     QAGQLEDGTAIGTAIATAANRLRNAPGKSRVMILLTDGVNNRGDIDPLTAARAASAYG
                     IKIYSIGVGTEGMAPVPVGRGLYGLRYENQPVEIDEALLTRISNMTGGRYFRAVDATA
                     LQNIYSQIDALERTPVQSTTYVRYSELFRWPLGIAVIALLIELGVAAVKAPLP"
     gene            complement(3640..>4081)
                     /locus_tag="VLI40_09390"
     CDS             complement(3640..>4081)
                     /locus_tag="VLI40_09390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97431.1"
                     /translation="AIALLGLLIWLWRRWRRRVARGLSPRQIAERDFARIDSQRLIES
                     GESERYAVEMVQVLRRYLAATVPAAAQSATTHELADSLQRSAVVPTQSLIDVLDATDL
                     IKFARERSTAERAREIGVAARRIVVDTDTAVEAANAAAEKAKAA"
BASE COUNT          760 a         1330 c         1300 g          691 t
ORIGIN      
        1 tcgccggcgg cgatctgatc ggccactgcg ctgggaagga cactgatcac gggcacgagt
       61 cggaccctgg cgacagtgtg atgcgactac aagcggatgc gccgcggcgc tccgtcattc
      121 ctcgtcgtcc tgatcgccac caccgcggcg ccggctgagc agcaggatgc caaagagaat
      181 cacggcgatg gcggtcgccg cgatcgcaat cacgagtgcg ttggagcgcg cgagtttcgc
      241 gatcgcggga aatggcgtat ccccgatcgt atctcgcggt accgcggtgg tatccgctac
      301 cgcgccggta gcggccgcga ccgtcaatcg cagagatggc gtcgtcgcgt attcgtaacg
      361 gcgcgacgtg ggattgaaga aatcgtaccg cacctccggc aacaccatct cgcccgcaat
      421 cttcggcgtc accacccagt cgaactcctt ggagccgcgc acgactgttc cggcggaatc
      481 ccagtacacc cgctccgcac cgggaaccgt ggtagcccag tcgatgtcga gcgtggggcg
      541 cgcaagtaat cggagattgc ccgcgccgga caaccgcatg gttaccgtga acggatcgcc
      601 gacacgcagg ctcgatccat cggtacgcaa cgtatctctg aattctccca ccgcgccgat
      661 gaagccaaca ggtttccccg acagcggcag cgcgacagca gtgaacgatt gcggagctga
      721 catcgtcgag tacgtacgcg gcggactgaa gtagtcgtcg ccgtcgggca ggctgtattg
      781 cagcgtcgcg gctggtaccg tgtacgtgcc gggcagcagt gggaatagcg cgcggtgata
      841 tgcgtaccgc cggtacggcg caccgttgac cgtgacagtg gatatcgcgc tcgtgtcgaa
      901 cgggaaatcg tagatggtca cgccggcaac atccgcaggc gtgaatacgg gattggcgcg
      961 caggcgtcgg cgcgcgacat cgtccacgag cgtcaccgcg tcgtagttca cctgctgtcc
     1021 gacgtaaacc gtatccggcg atatctgcgt ctggaactga acgacgccga cctgcgcgaa
     1081 gagcagcagt ccgacaatca ccagtccttc ccgtgcggcg gtggttgcgg cacgttcttc
     1141 tgctgtttgc gtccctgcac gtcctgctcc tcgcgtgcgg cattgttcaa aacggcgtcg
     1201 gcctgctgcg atccaagagc tcctcctccg gacggcttgg gttgtggtgc ctgcgcacct
     1261 ccgcccccgc caccacctcc tccaccgccg ccgctcgacg gcttgtgaac gcggagcgca
     1321 agctcgtagt tccacttggc gtcggtgtca tcgggcgtca gagtcaacgc tctccggtag
     1381 tgcgcgagcg cgctgtccag cggctgagcg gcggtatcgc catgcaactt cctgcctgta
     1441 acaagatacg cccagcccgc attgaacgtc gcgttgaaag ccatcgggcc atggcgcgcc
     1501 tcaacggagt cgaggatcgg tacggcggcc gcaagcgaat cacgggatag cagcgtcgtt
     1561 ccgcgattgt acgccagcag ctcggtcttt gcattcggcg agcacgccgc aagcgttcca
     1621 gcggcggcga tcgcggcggc gccaagccgt cgtctggaac ggagtccgag cagcgagtca
     1681 agcagaagaa gcaaaagggc cggtgccagg aaccactgga accgtggtgt tagatcacgt
     1741 ccggtctgga cagcgtgggc ttcagtcttg agtcgctgga tcgcggacct cacagcctcc
     1801 gccttgttcg tcgcctccgc cggcacgaac actccgccgg ccgaatcggc agcggtgcgc
     1861 agatactcgg gatgatactg tgtcaccacg acctgtccgt tctcgtctcg cttgaccgtc
     1921 gtcgctccgt tctcgacgat cgggatggtc gagccctgcg gcgtaccgaa tccaacagtc
     1981 acgacctcga tgccggcatc cctcgcgcgc gctgcagctg cggcaacatc cgacagcggc
     2041 tcgaacgcct caccgtcgct catcaacaca accgccttgt tcccgctgcc cttgccgagg
     2101 cttagtagtg cggttgcctg gcgcagcgca ctcgacatgg agctaccggc ctcgccgacg
     2161 accgtcggat cgagattgtc gaggtagagc gcgagtgcgc cgtcgtcagt cgtgagcggt
     2221 gtgaggatgt acgatttgcc ggcgaatgcg atcatcgcga accggtcgtc cggagacagc
     2281 gcgcgaagtt gacgcactac ctgcttcatt tttgcgaggc gcgatgggcg ctcgtcggtc
     2341 gcggtcatgg acagcgatgc gtcgagcgcg agaacgacat cggcaccgct ccgcgtgaca
     2401 accgagctct cctgtcccca gcgcgggccc gcgaaggccg cgccgagcag cagaagcgcc
     2461 acaacgaccc gaacattgtg ccacggcccg cgacgcgtgc cgagcggcgc gagccgcgca
     2521 agcatcgtcc tcgttccgag cagagagaga cggtggatgc gcgagcgccg tccgacgatg
     2581 agtgcgaata tgcccgcgag cggcaacacc acggcgaatg caacggccca cggccaatcc
     2641 agaaagcgaa tcatggcagc ggcgccttga cggccgcgac acccagctcg atcagcaacg
     2701 caatcactgc aatgccgagt ggccagcgga acagctcgct gtagcgcacg taggtcgtgg
     2761 actggacggg agtgcgctcc aacgcgtcga tctgcgagta gatgttctgc aacgccgttg
     2821 catcgaccgc acgaaagtat cttccgccgg tcatgttgga gatgcgcgtc agcaatgcct
     2881 cgtcgatctc gaccggctga ttttcatacc gcagaccgta caggccgcgg ccgacaggca
     2941 ctggcgccat cccctctgtg ccgacgccga tgctgtagat cttgattccg taagcggacg
     3001 ctgcacgagc cgcagtgagc ggatcgatgt cgccgcgatt gttcacgcca tcggtcagaa
     3061 gaatcatgac gcgcgacttt cccggggcgt tgcggagtct gttcgcggcg gtagcgatgg
     3121 cggtgccgat ggcggtgccg tcctccagct gtcctgcctg cagattgtcc accgcctgca
     3181 tcactaccgg ataatctgtc gtcagcggaa cctgagtgag cgcctcggcg gcaaatgcga
     3241 cgagcccgat gcgatcggac gtgcggcccg cgatgaatcg cttgacggtc gccttggcga
     3301 cggcgattcg gttggacggc tgaaagtcct ccgcgagcat ggagctggac agatcgatga
     3361 cgagaacgat gttgatcccc tcgctcgtca cgttctccga atgccccacg ccgcgcgggc
     3421 gagcgagcgc gagtacgagc gccgcaagaa cgacgttccg aaggatgaac agcatgcgct
     3481 cgaccgcgga gcccacgtgc ggcccgcgcg cgagagtcga tgtgcgcgag aacgtgatcg
     3541 ccggcggacg ctttcgcgca cgaatgatcc accagatcgg aagcaggagc agcagcagca
     3601 acgccagcgg cgtgaccagc tgaacggagg gaagttgcat cacgccgcct tcgccttttc
     3661 agccgcggcg ttcgccgcct cgacagcagt gtcggtatcg acgacgatcc gtcgagccgc
     3721 aacgcctatc tctcgtgcgc gctcggctgt cgaacgctca cgtgcgaact tgatgagatc
     3781 cgtcgcgtcg aggacgtcga taaggctttg cgtgggaacg accgcggagc gctggagaga
     3841 atccgccaac tcatgcgtcg tcgcggactg cgccgccgcg ggcacagtcg ccgcgaggta
     3901 tctcctcaac acctgtacca tctccaccgc gtaccgctct gattcacccg actcgatgag
     3961 acgctgcgaa tcgatgcgcg cgaagtcacg ctccgcgatc tggcgcggag acaatccccg
     4021 tgcaacgcga cgtcgccagc gacgccacaa ccagatcagg agaccgagga gcgcaatcgc
     4081 t
//
LOCUS       DATIMD010000428         6720 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3062832, whole genome shotgun sequence.
ACCESSION   DATIMD010000428 DATIMD010000000
VERSION     DATIMD010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6720)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6720)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6720
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3062832"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..392
                     /locus_tag="VLI40_09395"
     CDS             <1..392
                     /locus_tag="VLI40_09395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HSU97432.1"
                     /translation="AEDSGAAVLQFANGAVGVLDITMLTYPRNLEGSLTILGDRGSVK
                     IGGTAVNRVETWLFEDYDDDDKLIEAAATTPPTVYGFGHQGYYRNVLRVLRGEAVPDT
                     DGREGRKSLEIILAIYESARTGKSVSL"
     gene            complement(551..844)
                     /locus_tag="VLI40_09400"
     CDS             complement(551..844)
                     /locus_tag="VLI40_09400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97433.1"
                     /translation="MDPYTAHTIIKDATVVAVAAILGIGFPMARAYGRRVEKGTAGPR
                     TLPSGETAEARMERIERAVEAMALEVERMAEGQRFMTKLLAEPGRLKAPDDKV"
     gene            994..2115
                     /locus_tag="VLI40_09405"
     CDS             994..2115
                     /locus_tag="VLI40_09405"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HSU97434.1"
                     /translation="MAVPLLDLKAQHGTIRDEVIAAIMPIVDGQTFILGEPVERLEKQ
                     VAELSHTKHAIGCANGTDAILLALRALDIGRNDAVVTTPFTFFATAGAVHNVGARTVF
                     ADIDPDTFNISPAAVDETVRNTPDAKAVIAVDLFGQMAAIDEIRNVLPQGMPVIEDAA
                     QSIGASRRVEGLEVMAGEIADIGTFSFFPSKNLGGYGDGGMTVTQSDELAARLRRLRT
                     HGSIKTYFHEEVGYNSRLDALQAVVLSAKLPHLEAWSAARRRNASLYDRAFADLDGVR
                     TPVIDSKNKSIYNQYTLRAARRDELQEFLRKRGIGNSVYYPLPLHLQPCFAYLGYEEG
                     DFPESERAAKEVVSLPVYPELTDSQRDEVISAVRAFYGR"
     gene            2131..3459
                     /locus_tag="VLI40_09410"
     CDS             2131..3459
                     /locus_tag="VLI40_09410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HSU97435.1"
                     /translation="MDNKQRLLDKIADRTAVIGVVGLGYVGLPLAVEFAKAGFKVIGF
                     DVTKSLTDMLNTGKSHIQDVPSAELADVVSKKLFEATTDPKRIKEMDCVSIAVPTPLV
                     KTRDPDMSYVVAATATISEYAHPGMLVVLESTTYPGTTRELMQPKLEAAGLKIGSDVF
                     LAFSPERVDPGNPVWHTKNTPKVVGGITPACTEVATALYQSCLDTIVPVTSTETAELV
                     KLLENTFRSVNIGLANEMAIVCEKLGVNVWEVIDAAATKPFGFMKFTPGPGIGGHCIP
                     LDPHYLAWKMRTLNYKTRFIDLASEINSQMPALVVEKVAQALNHEHKSVNGSKVLVLG
                     VAYKKNIDDMRESPALDVIRLLEERGAAVSFHDPHVSTFREDGHVFTGVDLTDAALKH
                     SDAVVIVTDHDSVNYQRVVDLAPVVVDARNATKGLKSKTGRIVPLSADAA"
     gene            3466..4872
                     /locus_tag="VLI40_09415"
     CDS             3466..4872
                     /locus_tag="VLI40_09415"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HSU97436.1"
                     /translation="MNIAVIGTGYVGLVAGACLAETGNTVICADLDERKISLLKRSEI
                     PIFEPGLDAIVERNQADGRLIFTTDVEAAIADAEVVFIAVGTPPDEDGSADLSHVLAV
                     ADTVGRSMTRETVVVTKSTVPVGTAPLVKKAVAKHARFPFHVVSNPEFLKEGAAVEDF
                     LKPDRVVLGVESEFATTVMGELYAPFVRTGRPVIYMDIASAEMTKYAANGMLATRISF
                     MNEIAALCEATGADVDEVRRGLGSDTRIGPSFLFPGPGYGGSCFPKDVKALVRTGAQS
                     GVPLEILSSVDSSNERQKRRLGDKLRHALLSHVTHESAGGKSLPHSNLPHADNKDLHG
                     IRVAVWGLSFKPGTDDMREAPALVLIEQLLGWGATVCAHDPAAMEEARRRIGDGGGKI
                     CYAETGYDALTGADALVIVTDWNEYRHPDFNRLKATLKRPIVVDGRNLYDPKKMSNVG
                     ITYYSIGRQHNGAQETTA"
     gene            4869..5651
                     /gene="bamD"
                     /locus_tag="VLI40_09420"
     CDS             4869..5651
                     /gene="bamD"
                     /locus_tag="VLI40_09420"
                     /inference="COORDINATES: protein motif:HMM:TIGR03302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HSU97437.1"
                     /translation="MNRARRSLVVLGPLLALALATACHGNFDPKVYASNPESLFAASL
                     KQFNSHHYDNAAKGFEQLTHDLPARDALLPLSYYYLGESQEKNGDHLLAAQSFTRISD
                     AFPDDSLAPKSLLAGGRSYAKMWRKPELDPTYGTSALNTFESLVSLYPDSHLVPQANA
                     EIARLDNMFATKDLDVGDHYLRRGAYDSAIIYFKDVIKKHPTAKATRKAYLDLLTAYR
                     AIKYDADAKDLCTAALKAYPNDKEVAKQCGSASSAEASTPRT"
     gene            5606..6151
                     /gene="nadD"
                     /locus_tag="VLI40_09425"
     CDS             5606..6151
                     /gene="nadD"
                     /locus_tag="VLI40_09425"
                     /inference="COORDINATES: protein motif:HMM:NF000840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_function: GO:0004515 - nicotinate-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HSU97438.1"
                     /translation="MRLGVFGGSFDPPHIGHYLAAVDAAERLGLDRVLWVPTAQQPLK
                     AGAPHVASADQRFRMVQAAVLTNPAFEASRIEIDRPGLSYTVATVQSFAAEFPDAELY
                     LLIGEDAWSRFGEWREPETIRTLVHIEILARKTESEFAGRVVEVSSTEVRARARAGKS
                     VRGFVLDAVAEIIESERLYQW"
     gene            6145..>6720
                     /locus_tag="VLI40_09430"
     CDS             6145..>6720
                     /locus_tag="VLI40_09430"
                     /inference="COORDINATES: protein motif:HMM:NF019156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97439.1"
                     /translation="MVTEVTGLIKNVFGTRHDRERRRVQPLVNQINAEYERLHSLSDE
                     ELRGQTARFRAHLQEVTGELEARIAELKEKKHVAASATEREKLDDELGGADGRSGLEG
                     QLRELVARTLDEILPEAFATVREAARRLVGTTVNVTGHDQEWNMIHYDVQLIGGIQLH
                     RGRIAEMATGEGKTLVATLPLYLNALAGRGAH"
BASE COUNT         1347 a         2095 c         2065 g         1213 t
ORIGIN      
        1 aagcggagga ttcgggcgcg gccgtgctgc agttcgcgaa cggtgcggtg ggagtgctcg
       61 acatcaccat gctgacctat ccgcgcaatc tcgaagggtc gctcacgatc ctcggcgatc
      121 gcggctccgt gaagatcggc ggcaccgcgg tgaacagggt cgagacgtgg ctgttcgagg
      181 attacgacga cgacgacaag ttgatcgagg ctgccgcgac gacgcctccc acggtttacg
      241 ggttcggaca tcagggttac taccggaatg ttctccgggt actgcgcggc gaggctgtac
      301 cggatacgga cggtcgggaa gggcggaagt cgctcgagat tatcctcgcg atatacgaat
      361 cggcgcgaac cgggaagtcc gtcagcctgt aaagcagctc gtcattgtca ttcccgcgaa
      421 agcgggaatc catttgctgc cgacccgcct tgtgctgcca tcgcacttga agatcgataa
      481 catggattcc cgctttcgcg ggaatgacga gtctctgggc ccgcgttcgt gggaatgacg
      541 acgtgccgga tcagaccttg tcgtccggcg ccttgagccg ccctggctca gccagcagct
      601 tggtcatgaa ccgctgcccc tccgccattc gctcgacttc gagagccatc gcctcgactg
      661 ccctctcgat ccgctccatc cgcgcctccg cggtctcacc tgacggcagc gtgcgcggac
      721 ccgcggtgcc cttctcgacc cgcctgccgt acgcacgcgc catgggaaag ccgatcccca
      781 gtatggcggc gacagcgacg acggtggcat ccttgatgat tgtatgtgcc gtgtacgggt
      841 ccatccttcc tcgcggcctg agtggctcga cgcgcgcctg gcgcccatag cggaaattaa
      901 ttgacttagg gcgctccgac cggcgatctt tccaggctgt atcgacgtcc gtccagccct
      961 tttctctggc cggcgcgagt aaccccggat atcatggccg taccccttct agacctcaaa
     1021 gcccagcacg gcaccattcg cgacgaagtc atcgcagcga tcatgccgat cgtggatggg
     1081 cagacattca tactcggcga gcctgtcgag cgactcgaga agcaggtcgc cgagctgtcg
     1141 catacaaagc acgcaatcgg ttgcgccaat ggaaccgatg cgatcctgct cgcgttacgc
     1201 gcgcttgaca tcggacgcaa tgatgccgtc gtcacgacac cgttcacgtt ctttgccacc
     1261 gccggcgccg ttcacaacgt cggcgcgcga acagtgttcg ccgacatcga tcccgacacg
     1321 ttcaacatat ctccagcggc cgtcgacgag accgtgcgca acacgcccga cgcgaaggca
     1381 gtcatcgcgg tcgatctgtt cggacagatg gcggcgatcg acgagatccg gaacgtgctg
     1441 ccgcagggaa tgcccgtgat cgaggacgcc gcgcaatcca ttggcgcgag cagacgggtc
     1501 gaggggctcg aggtgatggc aggcgagatc gcggacatcg gcacattcag cttcttcccg
     1561 tccaagaacc tgggcggtta cggcgatggc ggcatgaccg tcactcagag tgacgagctc
     1621 gccgcacggc tcagaagact cagaacccac ggcagcatca agacgtattt tcacgaagag
     1681 gtcggctaca acagcaggct cgatgcgctc caggcagtcg tactgtccgc aaagcttccg
     1741 cacctcgaag cgtggagcgc ggcgcgtcgt cgcaatgcat cgctgtacga cagggcgttc
     1801 gcggatctcg atggcgtgcg cacacccgtg atcgacagta aaaacaagtc gatctacaac
     1861 cagtatactc tgcgcgccgc gcgccgcgac gagctgcagg aatttctcag gaaacgcggt
     1921 atcggaaact ctgtctatta tccgctgccg ctgcatctcc agccgtgctt cgcttacctc
     1981 ggttacgagg aaggtgattt tccggagagc gagcgcgcgg caaaggaagt tgtatcgctg
     2041 ccggtgtacc cggagcttac cgattcacag cgcgacgagg tcatctcggc agttcgcgct
     2101 ttctacggcc gttgagggcc ctccaaacga atggataaca agcagcgtct tctcgacaaa
     2161 atcgccgacc ggactgccgt cattggtgtg gtcggacttg gctacgtagg acttccactc
     2221 gcggtcgagt tcgcgaaagc cggcttcaag gtcatcggct tcgatgtaac aaagagcctg
     2281 accgacatgc tcaataccgg caagtcacac attcaggatg ttccatcggc tgagctcgcc
     2341 gacgtcgtca gcaaaaagct gttcgaggcg acgaccgatc ccaagcgcat caaggagatg
     2401 gattgcgttt cgatcgccgt cccgacgccg ctggtcaaga cgcgcgaccc cgacatgagc
     2461 tacgttgtcg ccgcaactgc gaccatcagc gagtatgccc acccgggcat gctcgtggtg
     2521 ctcgagagca cgacgtaccc gggcaccacg cgtgagctga tgcagcccaa gctcgaagcc
     2581 gccggcctca agatcggcag cgacgtgttc ctcgcgttca gccctgagcg cgtcgaccca
     2641 ggcaatcccg tgtggcatac caagaacact ccgaaggtcg tcggcggcat cacgccggca
     2701 tgcaccgaag tcgcgaccgc gctgtatcag agctgtctcg acacgatcgt ccccgtcacc
     2761 tcgaccgaga cggctgagct ggtcaagctg ctcgagaata cgttccgctc cgtcaacatc
     2821 ggactcgcga acgagatggc gatcgtctgc gagaagctcg gcgtcaacgt ctgggaagtg
     2881 atcgacgcag cggcgaccaa gccgttcggc ttcatgaagt tcactccggg ccccggaatc
     2941 ggcggccact gcatcccgct cgatccgcac tacctcgcgt ggaagatgcg cacgctcaac
     3001 tacaagacgc gcttcatcga tctggccagc gagatcaact cgcagatgcc cgccctggtg
     3061 gtcgaaaagg tcgcccaggc tctcaaccac gagcacaagt cggtgaacgg cagcaaggtt
     3121 ctcgtgctcg gcgtcgccta caaaaagaac atcgatgata tgcgcgaaag cccggcgctc
     3181 gacgtgatca ggctgctcga agagcgtggc gccgccgtca gcttccacga tccgcacgtg
     3241 tcgacgttcc gggaggacgg ccacgtcttc accggcgtgg atctcaccga cgctgcgctc
     3301 aagcattccg atgccgtcgt catcgtcacc gatcacgact cggtgaacta tcagcgagtc
     3361 gtcgacctgg cgcccgtcgt ggtggatgcg cgcaatgcca cgaagggtct caagtccaag
     3421 accgggcgca tcgtgccgtt gtcggccgac gcagcctagc gcaacatgaa catcgccgta
     3481 ataggaacgg gctacgtcgg cctggtcgca ggggcgtgcc tcgccgaaac aggcaacacg
     3541 gtcatctgtg ccgacctgga cgagcggaag atctcgcttc tcaagcgcag cgagatcccg
     3601 atcttcgagc cgggcctgga cgcaatcgtc gagcgaaatc aggccgacgg acgcctgatc
     3661 ttcaccaccg acgtcgaggc tgccattgcc gacgcagagg tggtgttcat tgccgtcggg
     3721 acgccccctg acgaggacgg gtctgccgat ctatcccacg ttctggctgt cgccgacacg
     3781 gttggccgct cgatgacacg cgagacggtg gtcgtcacca agtccacagt tcccgtcggg
     3841 acggcaccac tggtcaagaa ggcggtcgcc aagcacgcac gctttccgtt ccacgtggtg
     3901 agcaatcccg agttcctgaa agagggagcg gcagtcgagg actttctcaa gcccgaccgc
     3961 gtcgtgctcg gtgtcgagag tgagttcgcc accaccgtca tgggagagct ttacgccccg
     4021 ttcgtacgta ccggccgccc ggtcatctac atggacatcg cctccgcgga gatgaccaag
     4081 tacgctgcca acgggatgct cgcgacccgc atcagcttca tgaatgagat cgcggcgctg
     4141 tgcgaggcca ccggcgcaga cgtcgacgag gttcgccgag ggctcggtag cgatacgcgc
     4201 atcgggccca gctttctgtt cccagggccg ggatacggcg gaagctgctt ccccaaggac
     4261 gtgaaagcgc tcgtccgcac cggcgcacag tccggcgtgc cactcgagat cctcagctcg
     4321 gtagatagct cgaatgagcg tcaaaagagg cggctcggcg acaagctgcg tcatgccttg
     4381 ctatctcatg taacacatga aagtgcaggt ggtaaatcgt tgccacacag taatttaccg
     4441 catgcggata acaaagacct gcacggaatt cgtgttgcgg tatggggtct ctcgttcaag
     4501 cccggaacag acgacatgcg cgaggcgcct gcgctcgtgc ttatcgaaca actgctcgga
     4561 tggggggcga cggtttgcgc gcacgaccct gcggcaatgg aagaggctcg acgccggatt
     4621 ggcgacggcg gcggcaagat ctgctacgcg gaaacggggt atgatgctct gacgggcgcc
     4681 gacgcgcttg taatcgtcac ggactggaac gaataccgcc atcccgactt taaccgtctc
     4741 aaggctacgc tcaagcggcc gatcgtcgtc gacgggcgca atctgtacga tcccaaaaag
     4801 atgtccaatg ttggaatcac ttattactcg ataggacgcc agcacaacgg cgcccaggaa
     4861 acaaccgcgt gaatcgtgct cgccgctcgc ttgtagttct cggaccgctt ctggcgctcg
     4921 cccttgcgac ggcgtgccat ggcaacttcg atccaaaggt ttacgccagc aatcccgagt
     4981 cacttttcgc ggcgtcgctg aagcagttca attcgcatca ttacgacaac gcggccaagg
     5041 gattcgagca gcttacgcac gatctgcctg cccgtgatgc gctgctcccg ctgtcctact
     5101 actacctggg cgagtctcag gaaaagaacg gcgatcacct gctggccgcg cagagcttca
     5161 ccagaatctc ggacgccttt ccggacgaca gcctcgcgcc caagtcgctt ctcgccggcg
     5221 gccggtcgta cgccaagatg tggcgcaagc cggagctcga tccgacctac ggcacctccg
     5281 cgctcaatac cttcgagtcg ctggtgtcgc tgtatccgga ttcgcatctc gtgccgcagg
     5341 cgaacgccga aatcgcgcgt ctggacaaca tgttcgccac caaggatctg gacgtcggcg
     5401 accactatct ccgtcgcggc gcgtacgatt cggcgatcat ctatttcaag gacgtcatca
     5461 agaagcaccc caccgccaag gccaccagaa aggcgtatct cgacttgctg accgcgtatc
     5521 gcgccatcaa gtacgacgca gacgcgaagg atctctgcac tgcggcgctc aaggcctacc
     5581 ccaatgacaa ggaggttgcc aagcagtgcg gctcggcgtc ttcggcggaa gcttcgaccc
     5641 cccgcacata gggcactatc tggcggcagt ggatgccgcc gagcgcctgg gacttgatcg
     5701 tgtgctctgg gtgcctacgg cccagcagcc gctcaaggcc ggagcgccgc acgtggcgtc
     5761 ggctgaccag cgattcagaa tggttcaggc ggccgttttg acgaacccgg ccttcgaggc
     5821 gagcaggatc gaaatcgacc ggcccgggtt atcttacacg gttgcgaccg tccaatcgtt
     5881 tgcggcggaa ttcccggatg cggagctgta tctgctcata ggcgaagacg cttggtcgcg
     5941 cttcggcgaa tggcgtgagc cggagactat tcgaacgctc gttcatatag agattcttgc
     6001 gcggaaaacg gagagtgagt tcgccggccg cgttgttgag gtttcatcga ctgaggttcg
     6061 tgcgcgtgcg cgtgcgggca agtcggtgcg cggcttcgtg ctggacgcgg tcgcagagat
     6121 catcgaatcg gaaaggttgt atcaatggtg acagaagtta ctggtctgat taaaaacgtc
     6181 ttcggcaccc ggcacgatcg ggagcggagg cgcgtgcagc cgctggtcaa tcagatcaac
     6241 gctgaatacg agcgactgca ctccctgtcg gacgaagagc tgcgcggcca gacggccagg
     6301 ttccgtgcgc acctccagga agtcaccggt gagcttgaag cacggatcgc cgagctgaag
     6361 gagaagaagc acgtcgccgc ctcggcgact gagcgcgaga agctcgacga tgagctgggc
     6421 ggcgcggacg ggaggagcgg cctggaaggg cagttgcgag agctcgtcgc acgcacgctc
     6481 gacgagattc tgccggaggc gtttgccaca gtgcgcgagg ccgcgcgcag actggtgggc
     6541 acgacggtaa acgtcacggg gcacgatcag gagtggaaca tgatccacta cgacgtgcag
     6601 ctcatcggcg gaatccagct tcatcgcgga cgtatcgcgg agatggcgac gggcgaggga
     6661 aagacgctcg tcgcaacgtt gcctttgtat ctcaacgcgc tggcggggcg tggcgcgcac
//
LOCUS       DATIMD010000429        10685 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1333203, whole genome shotgun sequence.
ACCESSION   DATIMD010000429 DATIMD010000000
VERSION     DATIMD010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 10685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10685
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1333203"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..747
                     /locus_tag="VLI40_09435"
     CDS             142..747
                     /locus_tag="VLI40_09435"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HSU97440.1"
                     /translation="MFTGLIDEVGTIDRVADTDAGREFRVRTGYPALTAGESIAVNGA
                     CLTVRESGDGWFTVAAIVTTLGRTAVDGWTIGTRVNLERAMRLGDRLGGHLVQGHVDE
                     VGVVREVRREADAVVIDIEVSADMFGSFVPVGSVAIDGVSLTVNALPADRILQISLIE
                     FTLRHTNLGELRPGARVHIEADMIGKYVRRLLTPYTETVNA"
     gene            755..1969
                     /locus_tag="VLI40_09440"
     CDS             755..1969
                     /locus_tag="VLI40_09440"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA];
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HSU97441.1"
                     /translation="MPEPKFGTIEQALRDIAAGKMVIVADDDDRENEGDLICAAEHIT
                     TEGVNFMIRKAGGLICLALTGERADHLDLPQMSEFNTEEQRTAFTVSIDAAPRFGVTT
                     GISAHDRATTIRVAVDPSTTRADLRRPGHVFPLRAREGGVLQRVGHTEAAIDLARLAG
                     MRPAGVICEILNEDGSAARRPQLELFAREHGLTFVTVAQLVSYRLRTERLVHRIAEAR
                     LPTTHGEWRIIGYRNDVDQHEHVALVHGHVVGESGVLVRMHSKCLTGDVFHSQRCDCG
                     WQLDTAMEMIQAEGRGVIVYLDQEGRGIGLLNKLKAYQLQDEGKDTVEANEALGFGPD
                     LRNYGIGAQILLDLGLRSMRVLTNNPRKLVGLEGYGLIVDDRVPIVPPSTSENAHYLK
                     TKQAKLGHLLAS"
     gene            2035..2514
                     /gene="ribH"
                     /locus_tag="VLI40_09445"
     CDS             2035..2514
                     /gene="ribH"
                     /locus_tag="VLI40_09445"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HSU97442.1"
                     /translation="MAEFNGTPRGSGRRVVVVASRFNETITRPLVDGALEALVAHEVA
                     FDDIDVVWVPGAWELPLAARRALESGRYDALVALGAVIRGETPHFDFVAGEASRGLAL
                     VCIDAGIPVGFGLLTCDTMDQALARAGGVHGNKGWDAAVAALETTDVLDQIEPADEG"
     gene            2504..2914
                     /gene="nusB"
                     /locus_tag="VLI40_09450"
     CDS             2504..2914
                     /gene="nusB"
                     /locus_tag="VLI40_09450"
                     /inference="COORDINATES: protein motif:HMM:TIGR01951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HSU97443.1"
                     /translation="MRVESRARSRALQALYAWDMRDGTALDRVAQQVWDDLAVSQEEQ
                     HFAGFLVRILIARGDEIDTSLSAVTTNWRLSRIGAIERSVLRLAIAELLQGTTPPRVV
                     IKESVRLAERYGSEQSARFVNGVLDAYARQQGML"
     gene            2918..4021
                     /locus_tag="VLI40_09455"
     CDS             2918..4021
                     /locus_tag="VLI40_09455"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSU97444.1"
                     /translation="MRILVINWQDRDNPHAGGAELHLHEIFGRIARDGHDVDLLCSGF
                     PGAARDTVLDGIRVYRVGSRFSFPLHAHRAYEALVAKNDYDIVVEDLNKIPLYTPRWK
                     PRKLVVITHHLFGTTAFREESVPVAAATWLAERPLGRGYRNIPFEAVSLSTRDDLVTR
                     GIPADCIEVIYNGVDVESLTPDPNVRSEVPLFSYLGRLKRYKRVDLVVKAFAMLDAQE
                     ARLEIAGKGDDRDRLESLVARLHIEDRVRFLGYITEVEKRDLLRRSWATVLASPKEGW
                     GISNLESAACGTPVIAADSPGIRESVVDGDTGFLVPGSDVAAYAAAMRGLLDSPELVT
                     TLGANARRFAETFTWERAATETLAHLQHVARGA"
     gene            4023..4337
                     /locus_tag="VLI40_09460"
     CDS             4023..4337
                     /locus_tag="VLI40_09460"
                     /inference="COORDINATES: protein motif:HMM:NF014534.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPF/RaiA family ribosome-associated protein"
                     /protein_id="HSU97445.1"
                     /translation="MDIQFHGHQAEITDGLRMKASEGVQKLMDHLGRPVDADVWVSED
                     GVKKTVELVLRAPHFDNLVAKSEGKYHEPALTNAIAKLDAQIRRLKTAKKKQFHEAEL
                     RA"
     gene            4351..5322
                     /gene="hprK"
                     /locus_tag="VLI40_09465"
     CDS             4351..5322
                     /gene="hprK"
                     /locus_tag="VLI40_09465"
                     /inference="COORDINATES: protein motif:HMM:TIGR00679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr(Ser) kinase/phosphatase"
                     /protein_id="HSU97446.1"
                     /translation="MTRHPTVGELVERLADPLQLDDLGSGVGLQRPLPGPEISSPGLA
                     LSGYVGRFVSDRLQVLGETEVSYLNSLDPVRREEIIKLFFSFHLPAVFITKGQEPPPG
                     LREHARAAETALIRTALSTAEFYSGVKPALEELFAPTTTLHGSLADVYGVGLFFTGAS
                     GIGKSECVLDLVERGHRLVADDLVIVSRRGHDLLIGRAHEMAAHHMEIRGVGLINIPS
                     IFGIRSVRQQKRIEVVVHLETWDRNAPVERTGLDTSKASILGVEIPKITIPLNPGKNI
                     TVIAEVVAMNHLLHYSGINPAEQFNERLIQRMQKASAIRRYLQEDVE"
     gene            5323..5715
                     /locus_tag="VLI40_09470"
     CDS             5323..5715
                     /locus_tag="VLI40_09470"
                     /inference="COORDINATES: protein motif:HMM:NF015567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97447.1"
                     /translation="MDPDVAPRAIVAGHGAFPSGLVSAVEQITGRGNALIPFSNLGLG
                     RAEIESGLRDLLALHGVNVVFTDLPGGSATFAARRVQHDTPGLFVVTGVSLAALMDFV
                     FCDADMPAAESTARAVEKGRAAIVSLAI"
     gene            5716..6207
                     /locus_tag="VLI40_09475"
     CDS             5716..6207
                     /locus_tag="VLI40_09475"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF015769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HSU97448.1"
                     /translation="MPIALYRIDDRLIHGQVVVGWGQPLNLGFIVLVDDVVAESDWEQ
                     ELYRLGVPPSMDLYFSSTSDAAREIAKYASDRRTGMVLTGTVETMLQLARTAVLPITS
                     VNVGGIHHREDRTQKMRYVFLTKEEERDLRGMAELGVVVTAQDVPSAPSHSLDEMLRG
                     CMT"
     gene            6204..6899
                     /locus_tag="VLI40_09480"
     CDS             6204..6899
                     /locus_tag="VLI40_09480"
                     /inference="COORDINATES: protein motif:HMM:NF015566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HSU97449.1"
                     /translation="MTIQSILFSIVPVSLLGAVIGLDMVSFPQMMLSRPLVSATLGGA
                     FVGRPGAGLLIGAVLELIALETLPFGASRYAEWGTAGVVGGVVMAGQPQGAAGALPVA
                     MFVALATAVFSSRSMVWVRTWNAHQARRMRVAIDAGSPSAVDQLQLRGLTMDLVRGFV
                     ITFVALIILFPLSQEIVAIWGVNAIYSRAVVTALAATVAAGAIWTLTHRAARAGWLFV
                     LGLGAGTALLLLQ"
     gene            6896..7681
                     /locus_tag="VLI40_09485"
     CDS             6896..7681
                     /locus_tag="VLI40_09485"
                     /inference="COORDINATES: protein motif:HMM:NF015570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HSU97450.1"
                     /translation="MTPPQVHKWARRDPGTPAPVGKVAIAAALIRLFAVQGSWNYETM
                     LGNGIAFSMKPLLEHLPEERYHSAMARQARYFNAHPYLAGVAVGSLARAELDGDNPAR
                     IERFRTALCGPLGSVGDQLVWAGWLPLCSLIALTAFALGAGPLVVVCIFLGVYNVGHI
                     ALRTWGLRVGLRSGMRVAPALANPVFREWPAALARISAVLAGLILPLALQRIIGPGRV
                     LAGGVAVVAVVGAVVLARFGARATGWRAALGVLAIFVLYSVAR"
     gene            7681..7947
                     /locus_tag="VLI40_09490"
     CDS             7681..7947
                     /locus_tag="VLI40_09490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HSU97451.1"
                     /translation="MAERTVTIVNKNGVHARPAAEIVKTAGKFSSNVTIVRDDLEVNG
                     KSIMGVMMLAAECGSEIILRATGPDADAAIDALAQLVATKFGER"
     gene            7948..9750
                     /gene="ptsP"
                     /locus_tag="VLI40_09495"
     CDS             7948..9750
                     /gene="ptsP"
                     /locus_tag="VLI40_09495"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HSU97452.1"
                     /translation="MPRAIVGLPASPGIVVGPVHLLRWEVPQVRQRIISDEQVGPEIA
                     RFEDVVARARTRLGQIRERVSAHAGEEEAAIFDVQLAMLDDVELLDNVRSLIHQNLGA
                     EKAFDLVMADWRQSFARHTHQMLRERVADLTDVHIRVLSMLLDLADHDPVDLPKGSNA
                     ILVTHDLTPSLTVQLDRDAIAAIATDAGTRTSHVAILARSLGLPAVVGLRDATTQLRP
                     GDRVILDGSLGVVVPNPTEAQIAAYAERAVRDASDDAAMREIASAEPVTLDGVRIVLR
                     ANVDLPDEAAAAAGSGAEGVGLMRTEFLAVGRATMPDEDEQFRAYQGVVCAFGKHPVV
                     IRTFDVGGDKLPIRGYATEANPFLGWRAIRVCLDEPELFKTQLRALLRAAMFGDVRIM
                     LPLIVTLDEVRAARRLLKEASDELTARGVEHRSDVPLGVMVETPAAAIGADILASEVA
                     FFSIGTNDLVQYTLAVDRGNVNLAARFTPLHPSVLRLIRRTVQAGTAAGLEVAVCGEM
                     ASQPLMAFALIGLGVRQLSVAAQSVALVKRVIRGISVDVARAAADSAMLAGTAEEVEQ
                     VLRAAVRSAFGDAPFLRYGLPVKGDLDMFGDAGA"
     gene            9845..>10685
                     /gene="metK"
                     /locus_tag="VLI40_09500"
     CDS             9845..>10685
                     /gene="metK"
                     /locus_tag="VLI40_09500"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017370549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HSU97453.1"
                     /translation="MSERHLFTSESVTEGHPDKIADQISDAILDAILTDDASARVACE
                     TLVTTGLAVVAGEITTDTYVPVPDIVRETIARIGYTDATFGFDCKTCAVMSTIDRQSP
                     DIAQGVDTGGAGDQGMMFGYASDETPELMPLPIQLAHRITQSLADYRRAGGKKWLRPD
                     GKAQVTVVYEDHIPIAVDTVVVSTQHSDDISTRRLRQAIMSEVIEPNIPKEMRTRGIK
                     YHINPTGRFVIGGPQGDAGLTGRKIIVDTYGGMGRHGGGAFSGKDPSKVDRSACYAAR
                     WVAK"
BASE COUNT         1920 a         3201 c         3504 g         2060 t
ORIGIN      
        1 gtattgggcg gaggcgcact cgcggcattc tcgtcgacgt cgcctcgccg agcggagaac
       61 gtccgccgga tcccgatact ccgtcgccag gcctttggcg acgatctgat gactatttat
      121 gccctgcacg ctgtttgaag aatgtttact ggactgattg atgaggtcgg gaccatcgac
      181 cgcgtcgccg atacggacgc cggccgggag tttcgggttc gcacgggtta tccagccctc
      241 accgctggcg agagcatagc ggtgaacgga gcctgcctca cagtgcgcga gtcaggtgat
      301 ggctggttca ccgttgctgc aatcgtcacc acgctcggcc gcaccgcggt cgacggctgg
      361 acaatcggga cgcgcgtcaa tctcgagcgc gccatgcggc tcggcgaccg gctcggcggg
      421 cacctggtcc agggacacgt tgacgaggtc ggagtagtgc gcgaggtacg gcgcgaagcc
      481 gacgctgtgg tgatcgacat cgaggtgtcc gccgacatgt tcggctcttt cgttcccgtc
      541 ggctcggtcg cgatagacgg cgtcagtctc accgtcaatg cattgccggc ggatcgcatt
      601 cttcagatct cactgatcga gttcacattg cgccacacca atctgggcga gctgcgcccg
      661 ggtgcgcgcg tgcacattga agcggacatg atcggaaagt acgtgcggcg gctactgacc
      721 ccatatacgg agacggtcaa tgcctgaatc cagattgcct gaacccaagt tcggaaccat
      781 cgagcaggcg ctgcgcgata tcgctgccgg caagatggtc atcgtcgctg acgacgacga
      841 tcgcgagaat gagggcgacc tcatctgcgc cgcggaacac ataacgaccg aaggcgtgaa
      901 cttcatgatc cgcaaggcgg gtgggttgat ctgtcttgcg ctgacgggtg agcgcgccga
      961 tcatctcgac cttccgcaga tgagcgagtt caacaccgag gaacagcgca ccgcgttcac
     1021 cgtcagcata gatgccgcgc cgcgctttgg tgtcaccacg ggaataagcg cgcacgatcg
     1081 ggccacgacc attcgcgtag cggtcgatcc cagcaccacg cgtgcggatc ttcggcgtcc
     1141 gggccacgtg ttcccgttgc gcgcgcgcga aggcggcgtg ttgcagcgcg ttgggcatac
     1201 cgaagcggcg atcgatctcg cgcggctcgc cggaatgcgg ccagcgggcg tcatctgcga
     1261 gatactgaac gaggatggaa gcgctgctcg caggccacag ctcgagctgt tcgcgcgtga
     1321 gcacggactc accttcgtca cggttgcgca gctggtgtcg taccgtctgc gcaccgagcg
     1381 actggtgcat cgcatagcgg aggcgcgtct gccaacgacg cacggcgagt ggcgcatcat
     1441 cggctatcgc aacgatgtgg atcagcatga gcatgttgca ctcgtacacg gccacgtggt
     1501 tggcgaatcc ggcgtgctcg tcagaatgca ctccaagtgt ctcaccggcg acgtgtttca
     1561 ctcgcagcgt tgcgattgtg gctggcagct cgacaccgcg atggagatga tccaggcgga
     1621 ggggcgcggt gtcatcgtgt atctcgatca ggaaggccga ggcatcggtc ttctcaacaa
     1681 gctcaaggcc taccagctac aggacgaggg caaggacacg gtcgaggcga acgaggcact
     1741 cggcttcggt cccgacctgc gcaactacgg gatcggagcg cagatattgc tggacctcgg
     1801 gcttcgatcc atgcgcgtgc tgaccaacaa tccacgcaag ctcgtcggac tcgaaggata
     1861 cggactgata gtggacgatc gcgtaccgat agttccacca tcgacctccg aaaacgcgca
     1921 ctatctcaag acgaagcagg ccaagctcgg gcatctgctc gcgtcgtgaa cgcaggaccg
     1981 agcaactgct cgtaaccgat cgtaaccgct cgtaacgcac ccaacaagaa attaatggca
     2041 gagttcaacg gaacaccgcg cggctcgggg cgacgtgtag tcgtcgtcgc gagtcgtttc
     2101 aacgaaacta ttacacgtcc actggtcgat ggcgcactcg aagcgctggt cgcgcacgag
     2161 gtggcattcg acgacatcga tgtggtctgg gtgcccggtg cgtgggagtt gcctctcgcc
     2221 gcacggcgtg cgctcgagag cggacgctat gacgcgctcg tcgcgcttgg cgcggtgatt
     2281 cgcggcgaga caccgcactt tgattttgtc gcgggagagg catcccgcgg tctcgcgctc
     2341 gtatgcatcg atgcgggaat cccggttggc ttcggattgc tgacatgcga cacgatggat
     2401 caggcgctgg cacgtgctgg cggcgttcat gggaacaagg gctgggacgc agcggttgcg
     2461 gcgctcgaga cgaccgacgt cctggatcag atcgagccag ccgatgaggg ttgagtcgcg
     2521 cgcgcgctcg cgcgctctgc aggcgttgta cgcctgggac atgcgcgatg gcaccgcgct
     2581 cgatcgcgtc gcgcagcagg tgtgggacga cctggccgtg tcgcaggaag agcagcattt
     2641 cgcaggtttc ctcgttcgca ttctgatcgc gcgcggcgat gagatcgata cgtcgttgag
     2701 cgcggtaacg accaactggc ggctcagccg catcggtgcg atcgagcggt cagtgctgcg
     2761 actcgcaatc gccgagctgt tgcagggcac cactccgccg cgcgttgtga tcaaggaatc
     2821 cgtgcgactt gcagagcgtt atggaagcga gcagagcgcg cgctttgtga acggagtgct
     2881 cgatgcgtac gcgcgtcagc agggcatgct ctgagctttg cgcatccttg tcatcaactg
     2941 gcaggatcgc gacaatccgc acgctggcgg cgcggagctg catctgcatg agattttcgg
     3001 gcggattgca agagacggcc atgatgtcga cctgctgtgc agtggcttcc cgggcgcggc
     3061 gcgtgacacc gttctggatg ggattcgcgt atatcgcgtg gggtcgcgct tctcatttcc
     3121 gctacatgcg caccgcgcct atgaggcgct ggtcgcgaaa aacgactacg acatcgtggt
     3181 cgaggatctg aacaagattc ccctgtacac tccgcgctgg aagccgcgga agctcgtcgt
     3241 catcacgcac catctcttcg gcacgacggc cttccgcgag gagtccgttc ctgtcgctgc
     3301 ggcaacatgg ctcgccgaac gtccgctcgg gcgtggctat cgcaatatcc cgttcgaggc
     3361 tgtaagcctg agcactcgcg acgatctggt cacgcgcggc atccctgcgg actgtatcga
     3421 ggtcatatat aacggagtcg acgtagaatc ccttacgcct gatccgaacg tacgttcgga
     3481 agtgccgtta ttctcatatc ttggccgatt gaagcggtat aagcgggtcg atctggttgt
     3541 gaaagccttc gcaatgctcg atgcgcagga agctcgcctg gagattgcag gcaaaggcga
     3601 tgatcgtgac cggctggaat cgctcgtggc aaggctccat atcgaggatc gggttcggtt
     3661 tctggggtat atcacggaag tggagaagcg ggatctgttg cggcgatcat gggcaacggt
     3721 cctcgcctct cccaaagagg gctggggaat cagtaacttg gagtcagcag catgtggcac
     3781 accggtgatt gcggcggact ctccgggcat cagagagtca gtggtggatg gcgataccgg
     3841 ttttcttgtt ccaggttcgg atgtcgcagc atatgctgct gcgatgagag ggttgcttga
     3901 ttcgccggag ctcgtcacga cactaggagc caacgcgcgc cgctttgccg aaacctttac
     3961 atgggaacgc gcggcgacgg agacgttggc acatctccaa catgtagcca ggggagcgta
     4021 gcatggatat ccaattccac gggcatcagg ccgagatcac ggatggactt cgcatgaagg
     4081 catcggaagg agtccagaaa ttgatggacc atctcggcag accagtcgac gccgacgtgt
     4141 gggtgagcga ggacggcgta aagaaaaccg tggaactggt gctgcgtgca ccgcattttg
     4201 ataatctggt ggcgaagagt gaagggaagt atcacgagcc tgcattgacc aacgcgatcg
     4261 ccaagctgga cgcgcagatt cgccgtctca agaccgcgaa gaagaagcag tttcacgagg
     4321 cagagcttcg cgcgtgacgc gtcactcagc gtgacgcggc atccgaccgt cggcgagctg
     4381 gttgagcggc tcgccgatcc gctgcaactc gatgatctgg gcagcggtgt gggactccag
     4441 cgccccttgc cgggaccgga aatttccagc cccggccttg cgctatcggg ctatgtcggg
     4501 cgcttcgtct ccgatcggct gcaggtgctt ggggaaaccg aagtcagtta cctcaactcg
     4561 ctcgatcccg ttcggcgcga ggagatcatc aagctcttct tctcctttca cctgcccgcg
     4621 gtatttatca ccaagggtca ggagccgccg cctgggttgc gcgagcacgc acgcgcagct
     4681 gaaaccgcgc tgattcgcac ggcgctttcc acggctgagt tctacagtgg cgtcaagccg
     4741 gcgctggagg aattgttcgc accgacaact accctgcatg gctcgctcgc tgacgtttac
     4801 ggagtgggcc tctttttcac cggggcgagt ggaatcggca agtcggagtg tgtgctcgac
     4861 ctggtggagc gcggccaccg ccttgtcgcc gacgatctgg tgatcgtttc caggcgcggt
     4921 cacgacctgc tcatcggacg cgcgcacgaa atggcggcac accacatgga gattcgcggc
     4981 gtggggctca tcaacattcc gtccatcttc ggcattcgct cggtgcggca gcagaagcga
     5041 atcgaagtcg tggtgcatct ggaaacgtgg gacaggaacg cgcctgtcga gcgcacgggg
     5101 ctggacacgt ccaaggcaag catacttggt gtcgagattc ccaagattac catcccgctc
     5161 aatcccggaa agaacatcac ggtcatagcg gaggtggtcg cgatgaacca tcttctgcac
     5221 tactccggaa tcaatccggc ggagcagttc aacgagcgcc tgatccaacg catgcagaag
     5281 gcatcggcga tccggcgcta cctgcaggag gatgtcgagt agatggatcc tgacgtcgcg
     5341 ccgcgcgcga ttgtcgccgg acatggcgcc tttccaagcg gactcgtctc cgctgtggag
     5401 cagataaccg gacgcggcaa tgcgctcatt ccattttcca atcttggtct ggggcgtgcg
     5461 gaaatcgaaa gcgggctgcg cgacctcctc gcactgcacg gcgtgaatgt cgtattcacg
     5521 gatctgcccg gaggcagcgc gacatttgcc gcgcgccgcg tgcagcacga cacccccggt
     5581 ctgttcgtcg ttaccggcgt gagtctcgcc gctctcatgg actttgtatt ctgcgacgca
     5641 gacatgccag cggcggagtc aactgcacgt gccgtcgaga aaggacgcgc cgctatagtt
     5701 tccctagcga tctgaatgcc aatagcgctt tatcgaatcg acgatcggtt gatacacggc
     5761 caggtcgtcg ttggctgggg gcagccactc aatcttggct tcatcgttct ggtcgacgac
     5821 gtcgtcgcgg aatcggactg ggaacaggag ctgtatcggc tgggcgtccc gccaagcatg
     5881 gatctgtatt tctcgtcgac gagcgacgcc gcgcgcgaga tcgcgaagta cgcgtcggat
     5941 cgtcgcacag ggatggtcct taccggaacg gtcgaaacga tgttgcaact cgcgcgtacc
     6001 gcggtgttgc cgatcacttc ggtcaacgtg ggcgggattc atcaccgtga ggaccgcacg
     6061 cagaagatgc gctacgtgtt cctcacaaag gaggaagagc gggacctgcg cggcatggcc
     6121 gagctcggcg tcgttgtcac ggcgcaggat gtcccgtcgg cgccgagtca ctcgctggat
     6181 gagatgttgc gcggatgcat gacgtgacga tccagtcgat cctcttcagc atcgtccctg
     6241 tatcgctgct gggagcagtg atcggtctcg acatggtgag ctttccgcag atgatgctgt
     6301 cgcgccctct cgtatcggcc acgctgggcg gcgcgttcgt ggggcggccg ggcgccggcc
     6361 ttttgatcgg tgcggtgctc gaactcatcg cgctcgagac gctgccgttc ggcgcgtcgc
     6421 gttacgcgga atggggaacg gctggtgtcg tgggcggtgt cgtgatggcg ggccagccgc
     6481 agggcgccgc gggtgcgcta ccggtcgcga tgtttgtcgc acttgcaacc gctgtattca
     6541 gcagccggag catggtgtgg gtgcgtacat ggaatgcaca ccaggcacgc cggatgcgcg
     6601 tcgccatcga cgcaggctcg ccgtcggcag tcgaccaatt gcagttgcgc ggtctcacga
     6661 tggatctcgt gcgtggcttc gtcataacct tcgtcgcact catcatcctg tttccgctgt
     6721 cacaggagat cgtcgcgatc tggggtgtca atgcgatcta ttcgcgcgct gtcgtgactg
     6781 cgctcgcggc gacagtggcc gctggtgcta tctggactct cacccatcgt gcggcgcgcg
     6841 ccggttggct cttcgtgctc ggactcggtg ccggcaccgc actgttgttg ctgcaatgac
     6901 gccgccacag gtacacaagt gggcgcgtcg cgatcccggt acgccggcgc cggtcggcaa
     6961 ggtcgcgatc gcagcggcac tcatccgcct gttcgcggtg cagggatcgt ggaattacga
     7021 gaccatgctc ggcaatggaa tcgcgttcag catgaagccg ttgctcgagc atctgccgga
     7081 ggagcgctat cactccgcga tggcgcgcca ggcgcgttat ttcaatgcac atccgtacct
     7141 tgccggtgtg gctgtgggat cgctggcccg ggccgagctg gatggtgaca accccgcccg
     7201 catcgagaga ttcagaaccg ccctgtgcgg gcctctcggc agtgtcggag accagctcgt
     7261 ctgggccgga tggctgccgc tctgctcgct gatcgcgctc accgcgttcg cgctcggagc
     7321 tggcccgctg gtggtggtgt gtatctttct gggcgtctac aatgtgggac acatcgcgct
     7381 caggacgtgg ggtcttcgtg taggactcag aagtggcatg cgcgtcgcgc cggcccttgc
     7441 gaatccagtt ttcagagagt ggccagcggc gctggcacga atttcggcgg tactggccgg
     7501 actgattctt ccgctcgccc ttcagcgcat catcggaccg ggacgcgtac tcgccggcgg
     7561 cgtggcggtc gtcgcggtag tcggggcggt agttcttgct cgtttcggtg cgcgtgcgac
     7621 gggttggcgc gccgcgctcg gagtgctggc gatttttgtc ctctactcgg tggctcgttg
     7681 atggcggagc gaacggttac gatcgtgaac aagaacggag tccacgcgcg acctgccgcc
     7741 gagatcgtca agacggcggg caagttcagc agtaatgtta cgatcgtacg cgacgaccta
     7801 gaggtgaacg gcaagagcat catgggcgtg atgatgctgg ccgctgaatg cggatcggag
     7861 ataattctgc gcgcgacggg acccgacgcg gatgccgcga tcgatgcgct ggcgcagctg
     7921 gtggccacaa agttcgggga gcggtaggtg ccacgcgcga tcgttggcct gccggcttca
     7981 cccgggatcg tcgtaggccc cgtacatctt ctccggtggg aagtaccgca ggtacgccag
     8041 cgcatcatct cggacgagca ggtcggtccc gaaatcgctc gattcgaaga tgtagtcgcg
     8101 cgagcgcgca cgcgtctagg ccagatcagg gagcgcgtca gcgcgcacgc tggcgaggag
     8161 gaggctgcca tcttcgatgt gcagcttgcg atgctcgatg acgtcgagct gctggacaac
     8221 gtgcgctctc tcatccatca gaacctcggc gcggagaagg cgttcgatct tgtcatggcg
     8281 gactggcgcc agagcttcgc gcgacacacc catcagatgc tgcgcgagcg cgtcgcggat
     8341 ctcaccgacg tacacatccg cgttctgtcg atgttgctcg acctcgccga tcacgatccc
     8401 gtcgatctgc ccaagggatc caacgcgatc ctcgtcacgc acgatctgac gcccagtctc
     8461 actgtgcagc tcgatcgtga tgcgatagcc gcgattgcaa ccgatgccgg cacgcgaacg
     8521 tcgcacgtcg ccatcctggc tcgatccctg ggccttccag cagtggttgg tctgcgcgat
     8581 gccacgactc aactgcggcc cggcgatcgt gtaattctcg acggctcgct cggcgtggtg
     8641 gtgccgaatc cgaccgaagc gcagatcgcg gcgtacgccg agcgtgcggt gcgcgacgcg
     8701 tcggacgatg cggcgatgcg cgagatcgcg tccgccgagc cggttacgct cgacggagtg
     8761 cgaatcgtgc tgcgcgcgaa cgtcgatctg ccggacgagg ccgccgccgc agccggaagc
     8821 ggcgcagagg gagtgggcct catgcgcacc gagttcctcg ctgtcggccg cgccacgatg
     8881 cctgacgagg acgaacagtt tcgtgcttat cagggagttg tgtgcgcgtt cggcaaacat
     8941 cccgtcgtca ttcgcacgtt cgacgtcggc ggcgacaagc tcccgattcg cggttacgcg
     9001 accgaagcga atccgtttct cggctggcgt gcgatccgcg tctgtctgga tgagcccgag
     9061 ctgttcaaga ctcagctgcg tgcgttgctg cgagcagcga tgttcggcga cgtgcgcatc
     9121 atgctgccat tgatcgtgac gctggacgag gtgcgcgccg cgcgcaggtt gctgaaggaa
     9181 gcgtccgacg agctcaccgc tcgcggtgtc gagcaccgga gcgacgtacc gctcggcgtg
     9241 atggtggaaa caccggccgc ggcaatcggt gcggacattc tcgcctccga agttgcgttc
     9301 ttcagcatcg gcacgaacga cctggtgcag tatacgctcg ccgtggatcg cggcaacgtg
     9361 aatctggctg cgcgcttcac tccattgcat ccgtccgtgt tgcgcctgat caggcgtacc
     9421 gtccaggccg gtaccgcggc tggtctggaa gtggctgttt gtggcgagat ggcatcgcag
     9481 ccattgatgg cgttcgcgct catcgggctc ggtgtccggc agctgagcgt cgccgctcaa
     9541 tcggtcgccc tcgtgaagcg cgtgatccgc ggcataagtg tggacgtcgc ccgcgccgct
     9601 gccgattccg cgatgcttgc cggcacggcg gaggaggtcg agcaggtgct tcgggcggcg
     9661 gtccggtcgg cctttggcga tgcgccgttt ctccggtatg gattgcccgt caagggtgat
     9721 ctggatatgt ttggagacgc cggcgcttga tccatccgtt catccggctt gacggaaata
     9781 gtcggccctc ccgccacttc ggccggtagc gctcaatccc cgtctggccc ctatcaccga
     9841 tattgtgtcc gaacgccatc ttttcacgtc cgaatccgta accgaaggcc accccgacaa
     9901 gatcgccgac cagatttccg acgcgatcct ggatgccatt ctcaccgacg acgccagcgc
     9961 gcgcgtagcg tgcgagacgc tcgtaacaac cggtctggcg gtagtcgcgg gcgagatcac
    10021 gaccgataca tacgtgccgg tgccggacat cgtccgcgaa acgatcgcgc gcatcggcta
    10081 caccgacgcg accttcggct tcgactgcaa gacatgcgcg gtcatgagca cgatcgaccg
    10141 ccaatcgccg gacatcgcgc agggcgtcga cacgggcggg gcaggtgacc agggaatgat
    10201 gttcggttac gccagcgacg agacgccgga attgatgcca ttgccgatcc agcttgcgca
    10261 tcgcatcacg cagtcccttg ccgactaccg tcgcgccggc ggcaagaagt ggctgcgccc
    10321 ggatggaaag gcgcaggtaa ccgtagtgta cgaagaccac atcccgatag cggtagatac
    10381 agtcgtcgtc tcgacgcagc acagcgatga catctccact cgtcgcctgc gccaggcgat
    10441 catgtccgag gtcatcgagc cgaacatccc gaaggagatg cgcactcgcg ggatcaagta
    10501 tcacatcaat ccgaccggcc ggttcgtcat cggcggcccg cagggtgacg ccggtctcac
    10561 gggtcgcaag atcatcgtcg acacctacgg cggaatggga agacacggcg gcggcgcatt
    10621 ctcgggcaag gatccgtcca aggtggaccg ctccgcatgc tacgcagcgc gctgggtggc
    10681 gaaga
//
LOCUS       DATIMD010000430         2147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1042343, whole genome shotgun sequence.
ACCESSION   DATIMD010000430 DATIMD010000000
VERSION     DATIMD010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1042343"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1708
                     /gene="hutU"
                     /locus_tag="VLI40_09505"
     CDS             <1..1708
                     /gene="hutU"
                     /locus_tag="VLI40_09505"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HSU97454.1"
                     /translation="FRRMHFMGRSGGESVMTHGARVVRAPHGTEITCKGWQQEAAMRM
                     LMNNLDPEVAERPDDLVVYGGTGKAARNWEAFDAIVRELRDLGDDETLLVQSGKPVGV
                     LRTHRSAPRVLIANSNLVGRWATWDKFRELERAGLIMYGQMTAGSWIYIGSQGIVQGT
                     YETLGAVARKHFDGSLAGRLVVTAGLGGMGGAQPLAATMLGAAFLGVEVAERRIDKRI
                     ETGYCDRKTSSLDEALAWLGEAQRNRTPLSVGLVGNAADVIPELVRLGVVPDVLTDQT
                     SAHDMLNGYVPAGMSLSDADELRRVDPDEYVRRSTTSAVRHVEAMLALQKMGAVTFDY
                     GNNIRTVAFDAGLERAFDFPGFVPAYIRPLFCEGKGPFRWAALSGDPADIARTDRLVL
                     DLFPHDEHLARWIKLASERIHFQGLPARICWLGQGDRARFGVALNDLVASGEISAPIA
                     IGRDHLDTGSVASPFRETEAMLDGSDAIADWPILNALVNTASGASWVSFHHGGGVGIG
                     NSLHAGQVVVADGTPEMRERIERVLTNDPATGILRHTDAGYDIARDAAARHGLTIPVP
                     RQ"
     gene            1791..>2147
                     /locus_tag="VLI40_09510"
     CDS             1791..>2147
                     /locus_tag="VLI40_09510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97455.1"
                     /translation="MSDAGIRTNVAIAIDEGRIVAVGAMTDVERELSELGDRGDAERP
                     ASPEYIDCAGRVVTPGLVDSHTHAVFGRPRYDEQELRAAGAGYMEIAEKGGGIHSSVR
                     DLRTRSEDDLVTLTRAR"
BASE COUNT          403 a          619 c          756 g          369 t
ORIGIN      
        1 gtttcgacga atgcatttca tgggacgcag cggaggagaa agcgtaatga cgcatggtgc
       61 cagagtcgtg cgcgcacccc acgggaccga gatcacgtgc aagggatggc agcaggaagc
      121 tgcgatgcga atgctgatga acaacctcga tcccgaagtc gccgagcgtc cggatgatct
      181 cgtcgtctat ggcggaacgg ggaaggcagc gcgcaactgg gaagccttcg acgcaattgt
      241 gagagagctt cgcgatctcg gcgatgacga gacgctgctc gtgcagagcg gcaagccggt
      301 cggggtgctg cggactcatc gcagtgcgcc gcgcgtgctc atcgcgaaca gcaatctcgt
      361 ggggcgctgg gcgacgtggg acaagttccg cgagctcgag cgtgcgggtc tgatcatgta
      421 cggccagatg accgccggct cctggatata catcggatcg cagggcatcg tgcagggaac
      481 gtatgaaacg ctcggcgcgg tggcgcgcaa gcatttcgac ggctcgctcg cggggcgact
      541 cgtcgtcacc gcgggactcg gtggaatggg cggcgcacaa ccactcgccg cgacgatgct
      601 cggcgctgca ttcctcggcg tggaagtcgc cgagcgtcgc atcgacaagc ggatcgaaac
      661 cgggtactgc gatcgcaaga cgagcagcct cgacgaagct ttggcgtggc tcggcgaagc
      721 gcagcgaaac cggacgccgc tgtcagtggg actcgtcgga aacgcggccg atgtgattcc
      781 ggagcttgta cgcctcggcg tggtgcctga tgtgctgacg gatcagacga gcgcccacga
      841 catgctgaac ggttacgtgc ctgctggaat gtcgctcagc gatgcggacg agctccgacg
      901 cgtcgatcct gacgaatatg tacgacgctc gacgacgagc gcggttcgtc acgtcgaagc
      961 gatgctcgca ctgcagaaga tgggcgcggt gacgttcgat tacggaaaca acatccgaac
     1021 cgtagccttc gatgcgggtc tcgaacgagc gttcgacttc cccggattcg tgcccgcata
     1081 tatccggccg ttgttctgcg aggggaaggg cccgttccgg tgggcggctc tatcgggtga
     1141 tccagcggac atcgcacgca ccgaccgcct ggtgctcgat ctgttcccgc acgatgagca
     1201 tcttgcgcgc tggatcaagc ttgcgagtga gcgaattcac ttccagggac tgccggcgcg
     1261 gatatgctgg ctcggtcagg gagatcgtgc gcgcttcggc gtcgcgttga acgatctcgt
     1321 tgcgtcgggc gagatcagtg cgccgatcgc gatcgggcgc gatcatctcg ataccggaag
     1381 cgttgcgtct ccgttccgtg agactgaagc gatgctggat ggcagcgatg cgattgccga
     1441 ctggccgata ttgaacgcgc tcgtgaacac cgcgagtggt gcaagctggg tgtcgttcca
     1501 ccatggcggc ggcgttggaa tcggcaattc gctgcatgcg ggacaggtgg tcgttgcgga
     1561 cggtacgccg gagatgcgcg agcgcatcga gcgcgtgctc accaacgatc ctgcgaccgg
     1621 catcctgcgc cacacagatg ccggctacga cattgcccgc gacgccgctg cgcgccacgg
     1681 gctgacgatt cccgttccgc gtcaatagtg tgacgcggcg catcatcttt cataacgcat
     1741 cgcaggtagt cacatgcgcc gggcccgcgc gcggaaggcg cggtgcagag atgtccgacg
     1801 caggaatacg tacgaacgtc gcgatcgcga tcgacgaggg ccgcatagtt gccgtcgggg
     1861 cgatgaccga cgtcgagcgc gagctgagcg agctcggaga tcgtggagat gcagagcgtc
     1921 cggccagtcc ggagtatata gactgcgcgg gccgagtcgt gacgccggga ctggttgatt
     1981 cacacacgca cgcggtgttc ggccggccca ggtacgacga gcaggagttg cgggctgccg
     2041 gcgcgggtta catggagatc gcagagaagg gaggcgggat ccactcgtcc gtgcgcgacc
     2101 tgcgcacgcg gagcgaggat gatctggtaa cgctgaccag agcgcgg
//
LOCUS       DATIMD010000431         2471 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3925335, whole genome shotgun sequence.
ACCESSION   DATIMD010000431 DATIMD010000000
VERSION     DATIMD010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3925335"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1281)
                     /locus_tag="VLI40_09515"
     CDS             complement(<1..1281)
                     /locus_tag="VLI40_09515"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HSU97456.1"
                     /translation="MSSQRFSRTTLFVFVFSCVLAHAGTFTLEQVLSSPFPNGLVAAQ
                     HSPRIAWVFNAKGARNVWIADGPNFAARQVTHFTGDDGIPIASLRITPDGRTVVFVRG
                     TETNEAGRVADPTNELAPRRQMVWAMEVDGDSPRALGEMGCGEEECEDVELSPDGQFA
                     VWAARKQLWIAPVSGATPSHQITDLPGNTLSPQWSPDGHEIAFVSNRGDHSFIGVYDL
                     GRDSVRYLAPGVDRDVSPRWSPDGKQVAFERMRGTEQKVPLIPDRPEPWSIWIADVAT
                     GNGHEVWQSGPKLDDSYPELTANVSFKFPANDRLVFASEQDGRNHLYSVAVSGGPAIL
                     LTPGDYDVEDVALSADKKSVLYTSNENDVDRRHIWRVALPDGKPLAVTHGDTMEWSPV
                     ETGTGNYLACLGSTATSPAMPYRLTAQGREMIAAS"
     gene            1506..>2471
                     /locus_tag="VLI40_09520"
     CDS             1506..>2471
                     /locus_tag="VLI40_09520"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HSU97457.1"
                     /translation="MLVFICAVGLSAAAAARDQVTTVVVSALTSSATPAPGTDGQQHV
                     VYELVLTNTSATPATLQTISVVDAASPSKALATFRGADFMSRLRTTGSRPVKDANLDL
                     DSTRLFLIDIAIPAGSAVPSRLLHTIDLMGGSMPGPTATTPVALSYTVAPIAITRELR
                     VIGPPLKGQRWVAANGCCAPGGVHRGTGLPVNGEIYFAQRFAIDWMQLDDQGRFVKGD
                     AADVHNYTCYGADVLAVADGTVIQTLNNLEDQKPGTLPDPKTINIDNIDGNHVILDLG
                     GGVYAFYAHMQKDSVAVHVGDRVTRGQVLGKLGNTGNTSAPHLHFQ"
BASE COUNT          491 a          806 c          711 g          463 t
ORIGIN      
        1 tgacgcggca atcatctcgc gcccctgcgc ggtaaggcga tacggcatgg caggcgaagt
       61 cgccgtcgaa ccaagacacg cgaggtagtt gcccgtcccg gtctccaccg gagaccactc
      121 catggtgtcg ccgtgcgtca cggctagcgg cttgccatcg ggaagagcca cacgccagat
      181 atgccggcga tcgacatcgt tttcgttcga ggtatacagc accgacttct tatcggccga
      241 gagcgccacg tcttctacgt cgtaatcacc gggcgtgagc aggatcgctg ggcctccact
      301 gaccgcaacc gaataaagat ggttacggcc gtcctgttcg gacgcaaaga ccagcctgtc
      361 gttcgcagga aacttgaacg acacattcgc cgtcagctcg ggataggaat cgtcgagctt
      421 cgggccgctc tgccacacct catgaccgtt cccggtcgcc acatcggcaa tccagatgga
      481 ccacggctcg ggacgatccg gaatcagcgg caccttctgc tcggttccgc gcatgcgctc
      541 gaacgcaacc tgcttgccat cgggagacca gcgcggcgaa acatcgcgat ccactcctgg
      601 cgcgagatac cgtacggagt cgcggccgag atcgtagacg ccaatgaaac tgtggtcgcc
      661 acgattactg acaaacgcga tctcgtgccc atccggagac cactgcgggc tcaacgtgtt
      721 tcccggcaga tcggtgatct ggtgcgaagg cgttgccccc gacaccggag cgatccacaa
      781 ctgcttgcgc gcggcccata cggcgaactg cccgtctggc gaaagttcga cgtcttcgca
      841 ctcttcctcg ccgcagccca tctcacctaa tgcgcgtgga gagtcgccgt cgacttccat
      901 cgcccacacc atctgcctgc gcggtgcaag ctcgttggtt ggatcggcaa cccggcccgc
      961 ctcgttcgtt tccgtgccgc gaacgaagac caccgtgcgt ccgtcaggag tgattcgcag
     1021 gctcgcgatg ggaatgccgt cgtcgcccgt gaagtgcgtt acctgtcgcg cagcgaagtt
     1081 cggaccatcg gcgatccaga cattgcgcgc gcccttcgcg ttgaacaccc aggcgatacg
     1141 cggcgaatgt tgcgccgcca ccagtccgtt aggaaaaggc gagctcaaca cctgctcgag
     1201 ggtgaaagtg ccggcatgcg cgagcacaca ggagaagacg aacacgaaca acgtggtgcg
     1261 agagaatcgt tgggagctca cggaaaagaa gcttaccacc gagtcgctgg gaagagctgt
     1321 agcttttgct gggtgccgag tcacttatcc gcccgggcat gcccctgttc cgctgatccc
     1381 cctggtgatc cgctggaagc ctcattcttc cccgcgctgt tgcggagaac atcagagacg
     1441 gcttgacgcc ctttagtaca atttcccgca tgcgcaaaca gagatccccg ttcgtcgtcc
     1501 gagctttgct cgtcttcatt tgtgcggtcg ggcttagtgc cgccgcggct gctagagatc
     1561 aagtcaccac cgtggtggtt tccgctctca cgtccagcgc gactcccgca cccggcaccg
     1621 acggacagca gcacgtggtc tacgaacttg tcctcacgaa taccagtgcc acaccggcta
     1681 cgctgcaaac catttcggta gtcgatgccg cgagtccgtc gaaagcgctc gcgacattcc
     1741 gaggtgcgga cttcatgtcg cgcctacgca ccaccggcag ccggccggtg aaagatgcca
     1801 atctcgatct cgacagcaca cggctgttcc tcatcgacat cgccatccct gccggctcgg
     1861 ccgtgccctc gcgtttgctg cacactatcg atctcatggg cggctccatg cccggcccca
     1921 cggcgactac gccggttgcg ctcagctaca cggtcgcgcc catagcgatc acgcgtgaac
     1981 tccgcgttat cggcccaccg ctgaaaggtc aacgctgggt ggcagcgaac gggtgctgtg
     2041 cgccgggcgg cgtccaccgc ggaactggat taccggtgaa tggtgaaatc tatttcgcgc
     2101 agcgcttcgc gatcgactgg atgcaactcg acgaccaggg gcgcttcgtc aaaggcgatg
     2161 ccgctgacgt gcacaactac acctgttacg gcgctgatgt cctggcggtt gcggatggca
     2221 cagtcatcca gacactcaac aatctcgaag accagaaacc tggcacgctt cctgatccga
     2281 agaccatcaa catcgacaat atcgacggca accacgtaat tctcgatctc ggcggaggcg
     2341 tgtacgcgtt ttatgcgcac atgcagaagg attcggttgc ggtacacgtg ggcgatcgcg
     2401 tcacccgggg acaagtgctg ggcaaactgg gcaacacggg taacacctct gctccacact
     2461 tgcactttca a
//
LOCUS       DATIMD010000432         9264 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5088706, whole genome shotgun sequence.
ACCESSION   DATIMD010000432 DATIMD010000000
VERSION     DATIMD010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9264
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5088706"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VLI40_09525"
     CDS             <1..189
                     /locus_tag="VLI40_09525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97458.1"
                     /translation="GKTIVGSLSPELLQPMEERLQRLEQTIEAIALQVERIAEGQRFV
                     TKLLSDAEQQPHRLGAPR"
     gene            278..1138
                     /locus_tag="VLI40_09530"
     CDS             278..1138
                     /locus_tag="VLI40_09530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97459.1"
                     /translation="MRSPGSTATFVILAIAGTACRRSERPTPPAAISHRSVVATGARD
                     YLITATDYAYTGLPVRAPSGWLTLRLANRGSEQHMLGVLAVPTGYTPATFVDSIVHLH
                     VPPDVKSAAGVDVVSPGDTAVISAYFPAGHYAVGCFVKSPDGAFHVVKGMAGSFDVVA
                     TPDTGSAPTIDAIATMRGNDIELTGAPIRSGLRTIRVLSDGPNFRDFQLLKLLPGRTS
                     QDALTWYAHRATIAPAATAIGGVSGMTSSQKAAMTVNFTPGSYVMLFDIQDAHGRPGF
                     VHRTFGIPAR"
     gene            1204..1482
                     /locus_tag="VLI40_09535"
     CDS             1204..1482
                     /locus_tag="VLI40_09535"
                     /inference="COORDINATES: protein motif:HMM:NF016875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HSU97460.1"
                     /translation="MIQSFRHKGLKKFFESGITAGVQPQHAQRLRILMAALDTAQAIQ
                     DMNVPGFRLHPLKGRRSGVWSVSVNGNWRVTFEFRDGQAYILDYEDYH"
     gene            1482..1775
                     /locus_tag="VLI40_09540"
     CDS             1482..1775
                     /locus_tag="VLI40_09540"
                     /inference="COORDINATES: protein motif:HMM:TIGR02607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HSU97461.1"
                     /translation="MAMHNPPHPGEFITEVYLIPNNLSGRELAGKLGVAASTLNRVLT
                     GSSGISPEMALRLAKALGRSPESWLAMQYNRDLWEARQRVDLASVTKVRLTAA"
     gene            1869..2396
                     /locus_tag="VLI40_09545"
     CDS             1869..2396
                     /locus_tag="VLI40_09545"
                     /inference="COORDINATES: protein motif:HMM:NF014657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HSU97462.1"
                     /translation="MLSFDIRALESTAAQVSGDLSAADPIWSAADTRPSDAVHVEGRL
                     SSAGGGRFYFSGKLSGQVTLECRKCLVEVTREVSEDAHFLFAPAGDPTTEDDPDVFTY
                     DPGVHQLDLRPAVREGWLLSVPAFVDCREDCKGLCLKCGANLNEGACDCQPATTDARW
                     DALRQIDDLRDDSNA"
     gene            2420..2602
                     /gene="rpmF"
                     /locus_tag="VLI40_09550"
     CDS             2420..2602
                     /gene="rpmF"
                     /locus_tag="VLI40_09550"
                     /inference="COORDINATES: protein motif:HMM:TIGR01031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HSU97463.1"
                     /translation="MAVPKRRISKQRKRLRNTAKGAPAIALQKCPQCQAIKRPHHVCE
                     ECGYYGGKQRVAAKGA"
     gene            2603..3640
                     /gene="plsX"
                     /locus_tag="VLI40_09555"
     CDS             2603..3640
                     /gene="plsX"
                     /locus_tag="VLI40_09555"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: protein motif:HMM:TIGR00182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HSU97464.1"
                     /translation="MARIALDAMGGDFAPAAPVTGALLALAELDQSHSIQLVGRADLI
                     HSTLDSLLAGEHAALALHRDRISVVDAPEAIDMSEKPLAALRAKPNNSMTIGLTLQVK
                     GEADAFVSAGNTGAQMAASALVLKLLPGLHRPAIATLFPTAQRPVVVLDSGANVDCSA
                     RELLQFAWLGGVYAECILGRENPAIGLLSIGEEPEKGNAAVKEANALFASAGFKFLGN
                     VEGRDLPAGRTDAGLIDVVVCDGFVGNVVLKFYEAVTPMIVGLIRKSAGIEPEILARS
                     LSQLDYSEHGGAPLLGVRGVSIISHGKSSPRAIKNSVKVGVRAVESKMNDMMGKRLTA
                     SEQTHSVATAS"
     gene            3637..4632
                     /locus_tag="VLI40_09560"
     CDS             3637..4632
                     /locus_tag="VLI40_09560"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HSU97465.1"
                     /translation="MIPTVARITGTGRGLPARIFTNDDFASIGIETSDEWIMERTGIH
                     ERRIASATETTCWMAATASRQAMQRAGVTAGEIDAIILSTATPDRLLPATAVDLQAEL
                     GATRAAAFDVSAACSGWLYGLAVAEGMIASGAIDTALVVGAEKMSAIIDWKDRSTCVL
                     FGDGSGAVVLQRNKAGERAGILSTFMRSDGCLANLLYRPDGGAANPMTAEILENRTHL
                     VKMAGREVFKHAVREMSEAADRALDSAKLRAADIDLLIPHQANTRIIEATAKHANISM
                     DKVYVNVDRFGNTSSASIPIALDEVIEKKIVGPGATVMMVAFGAGFTWASAIVRL"
     gene            4656..5594
                     /gene="fabD"
                     /locus_tag="VLI40_09565"
     CDS             4656..5594
                     /gene="fabD"
                     /locus_tag="VLI40_09565"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: protein motif:HMM:TIGR00128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HSU97466.1"
                     /translation="MNVILLFPGQGSQKQGMGKDLAAAFPAARETFQRIDDTLGFALS
                     SLCFDGPQEELTLTRNAQPALYAHGAAAWAAVRDMLVNRVVAAAGHSLGELTAYHAAG
                     SLQLESGATLVRKRGEIMFDIGSERPGTMAAVLGHLTVPIDELCKQATREAGLVVPAN
                     YNNDEQVVVSGEPAGVERVMELAKTAGAKRSLRLAVSGAFHSPLMEPTEIAFSGVLRA
                     TELVDPEFPVYSNVTADACTTGAEARTLLLRQLTSPVRWSTEVRTMDAAHPDSLYVEL
                     GPGRVLGGLVSHLVPGARTIAVGAPADVDKLAEALG"
     gene            5591..6331
                     /gene="fabG"
                     /locus_tag="VLI40_09570"
     CDS             5591..6331
                     /gene="fabG"
                     /locus_tag="VLI40_09570"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HSU97467.1"
                     /translation="MSIQIDLAGRNALVTGSTRGIGRAIANTLAECGARVAVVGRDLE
                     RSQGVAAEIGGGALGFAADVGDVAAVVKLVADVEAAFGGIDILVNNAGLTRDNLLMRI
                     KDDDWDAVIDANLRGAFVAIRAATRGMMKRRWGRVINITSIVGINGNKGQANYAASKA
                     GLIGLTKSVARELGSRNILANAVAPGFIDTDMTAAMTPEARSAMAGQIPLERLGAPMD
                     VAGAVAFLASDLASYITGQVLVVDGGMI"
     gene            6480..6719
                     /locus_tag="VLI40_09575"
     CDS             6480..6719
                     /locus_tag="VLI40_09575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HSU97468.1"
                     /translation="MADNSEKVKDIIANELGVEREKLTDGASFIDDLGADSLDIVELV
                     MEFEKEFNIEIPDEDAEKLRTVGDALAYLNGKVAA"
     gene            6719..7969
                     /gene="fabF"
                     /locus_tag="VLI40_09580"
     CDS             6719..7969
                     /gene="fabF"
                     /locus_tag="VLI40_09580"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HSU97469.1"
                     /translation="MARRVVVTGMGVVTPVGNSVAATWDALKAGTSGVAPITKFDASK
                     FPVRFAAEVKDFNPGDYMERKEVKRSDVYTQYAVAAAKMAMSDAGLSDPAAAGIDPDR
                     IGVIIGSGIGGLKSFEEQHDVYRELGPSKISPFFIPMFIADIAAGIVSMQFNAKGPNY
                     ATVSACATSAHAIGDAFRTIQYGDADVMITGGAEATVTPMAIGGFANMKALSERNDSP
                     STASRPFDATRDGFVMGEGAGIVILEELEHARARGATIYAEIVGYGATGDAYHLTAPA
                     PDGEGAQRAMKRAMRDAKLGPADVQYINAHGTSTPANDLNETRAIKAVFGEYAKDLNV
                     SSTKSATGHMLGAAGAVEFVICALVVGEGVIPPTINYEHPDPELDLNFTPNVAVTRPV
                     TAALSNSFGFGGHNVSLAVRRFEE"
     gene            7978..9138
                     /gene="mqnE"
                     /locus_tag="VLI40_09585"
     CDS             7978..9138
                     /gene="mqnE"
                     /locus_tag="VLI40_09585"
                     /inference="COORDINATES: protein motif:HMM:TIGR03700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HSU97470.1"
                     /translation="MLAGMTLDLSLVTDPALRAAGEKLSSGTRLDASDGLTLFESPDI
                     IGLGSLADQVNRAKNGDRVTFASNQHINPTNVCYLRTTCVFCSFARLPKEDGAYHYSL
                     EQVFEESNSTGGLTREFHIVGGLDMKAGLQYYADMFRGLKQRHPNIHIKALTAVEIAH
                     IARIDKMSIEDVLVTLRDAGLDTLPGGGAEIFSKAVRASIAEKKLVAEDWIEVHRTAH
                     RLGIRSNCTMLYGHVESMQDRVDHLMLLRDLQDETGGFLAYVPLAYHPDNNDLGIELG
                     RQGTATSGFDDLRNLAAGRLFLDNFDHIKSHWIMVTPGLSQASLSFGVNDLEGTVVKE
                     KIYHEAGAHTAQGMSLDDLIKLIRGARRVPVERDSLYNVVRTFDDDSSQRAA"
BASE COUNT         1821 a         2915 c         2849 g         1679 t
ORIGIN      
        1 ggaaagacga tcgtagggag tctatcaccg gaattgttgc agcccatgga agagcgcctc
       61 caacggctgg agcagacgat cgaagcgatc gcattgcaag tcgagagaat cgccgaaggc
      121 cagcggttcg ttacaaagct cctctctgac gcggagcaac agccccatcg actcggcgca
      181 ccgcgttagc ccgcatcggt caggcaaggc caactcggct tgacgcgcat gccggcagga
      241 tacatcttcg ccgctaaccg tcacccgtta taacctcatg cgcagccccg gatcgaccgc
      301 gacgttcgtt atccttgcaa ttgcggggac agcatgcagg cgcagcgagc gaccgacgcc
      361 acccgcggcc atatcgcatc gttcggtcgt cgcgaccggc gcgcgcgatt acctgatcac
      421 tgcgaccgac tacgcataca ccggtctccc cgtccgcgcc ccatccggtt ggttgacgct
      481 tcgcctggcg aatcgcggca gtgagcagca tatgctgggt gtgcttgcag tgccaacggg
      541 atacacacca gcaacgttcg tggactccat cgttcacctg catgtcccgc cggatgtgaa
      601 aagcgcggca ggcgtcgatg ttgtaagccc tggcgataca gcagtgatct ccgcgtactt
      661 tccggcgggc cactacgcag tcggctgctt cgtgaaatcg ccggacggcg cgtttcatgt
      721 ggtgaaggga atggccggct ccttcgacgt agttgcgacg cccgacaccg gatcggctcc
      781 cacgattgat gcgattgcga ccatgcgtgg caatgacatc gagctcaccg gcgctccgat
      841 cagaagcgga ctacgcacca ttcgtgtgct gagcgacggt ccgaattttc gggattttca
      901 gctgctgaag ctgcttccgg gccgcacatc gcaggacgcc ctcacgtggt atgcgcatcg
      961 agcgaccata gcgcccgcgg cgaccgccat cggcggcgtc agtggcatga cttccagtca
     1021 gaaggccgcc atgacagtca acttcacccc tgggtcatac gtgatgctgt tcgatattca
     1081 ggatgcgcac ggccgtccgg gattcgtgca tcggaccttc ggcatcccgg cgcggtagta
     1141 cgcaacacct gtgtccttgc tcaagtcttg ttgctcggtg cgcaacgcgc tacattatga
     1201 tgcatgattc aatcgttccg gcacaaaggg ctaaagaagt tctttgagtc cggaattacc
     1261 gccggagttc agccgcaaca cgcgcaacgc ttgagaatcc ttatggcagc gctcgacacc
     1321 gcgcaggcaa tacaagacat gaatgtcccc gggttccgtc tgcacccgtt gaagggacgc
     1381 cggagcggcg tgtggtccgt atcggtaaac ggaaactggc gcgtaacatt tgaattccgg
     1441 gatgggcagg cttacatact ggattatgag gactaccact gatggccatg cacaatccgc
     1501 cgcacccagg cgaattcatt actgaggttt acttgatccc gaacaacctc agcggtcgtg
     1561 agcttgctgg caagctgggc gtcgccgcat caactctgaa cagggtactc accggctcca
     1621 gcggcatcag tccggagatg gcactccgac ttgcgaaggc cctcggccga tctccggaaa
     1681 gctggctcgc tatgcagtac aaccgcgatt tgtgggaggc caggcagcga gttgatctgg
     1741 ccagcgtcac caaggtcagg ctgactgcgg cataaaaccg gggactgaga cgcaacgcac
     1801 agtcgactgc ggtgtgcagt accatatccc gttgcacccc gccccctatc tggctatctt
     1861 acgtggctat gctgtccttc gacatccgcg cgctggagtc gaccgccgca caggtctcag
     1921 gagacctttc ggccgccgat cccatatgga gtgcggccga tacgcgtccg agcgacgcag
     1981 ttcacgtcga ggggcggctt tcgagtgccg gtggcggtcg cttctacttc agcggcaagc
     2041 tatccggaca ggtgacgctg gaatgccgga agtgcctcgt cgaggtcact cgggaggtga
     2101 gcgaggacgc acatttcctc ttcgcccctg ccggcgatcc gacgaccgaa gacgatccgg
     2161 acgtattcac gtacgacccc ggtgttcacc agctcgacct tagaccggct gtacgcgaag
     2221 gatggctcct ctcggtgcca gccttcgttg attgcaggga ggactgcaag gggctatgcc
     2281 tcaaatgcgg cgccaacctg aacgaagggg cttgcgactg ccagcccgcc accaccgatg
     2341 cccgctggga tgcgctgcgc cagatcgacg atctgcgcga cgattccaac gcctgaaaac
     2401 ctgacctaga agccgtccca tggccgtccc caaacgccgt atatccaagc agcgcaagcg
     2461 ccttcgcaac accgcgaagg gtgctcctgc gattgctctc cagaagtgtc cgcagtgcca
     2521 ggccatcaaa cgcccgcacc acgtgtgtga ggaatgtggc tactacggcg gcaaacagag
     2581 agtagccgct aagggcgcct agttggcccg catcgcgtta gacgcgatgg ggggcgactt
     2641 tgcccccgcc gctccagtca caggtgcgct cctcgcgctc gctgaactgg accagtcaca
     2701 cagcatccaa ctcgtcgggc gtgcggatct catccacagc acgctcgact cgttgctcgc
     2761 cggtgagcac gccgcccttg cgctgcaccg cgaccggata tccgtcgtcg atgcccccga
     2821 agcgatcgat atgtcggaga agccgctcgc cgcgctgcgc gccaagccca ataactccat
     2881 gacgataggc ctcacacttc aagtgaaagg tgaggccgac gcgtttgtgt cggccggcaa
     2941 cacgggtgcc cagatggcgg cctccgcact ggtcctcaag ctgcttccgg gcctccatcg
     3001 tcccgccatc gcgacgctct ttcccaccgc gcagcggccg gtcgtcgtcc tcgattccgg
     3061 cgcaaatgta gactgctccg ctcgcgagct gctccagttt gcctggctcg gcggcgtcta
     3121 cgccgagtgc attctgggcc gcgaaaatcc cgcgataggg ctgctcagca tcggcgaaga
     3181 gccggagaag ggaaacgcgg ccgtcaagga agccaacgcc ctgttcgctt cagctggctt
     3241 caaattcctg ggcaacgtcg agggacgcga cctgccggcc ggacgcaccg atgcaggatt
     3301 gatcgacgtc gtcgtatgcg acgggtttgt cggtaatgtg gtactcaagt tctacgaggc
     3361 cgtcacgccg atgatcgtcg gactcatcag gaaatcagcc ggcatcgagc ccgagatact
     3421 cgcgcgctcg ctcagccagc tggactactc ggaacacggc ggcgcccccc ttcttggcgt
     3481 gcgcggtgtc agcataatct cacatggcaa gtcatcgccg cgcgccatca agaactcagt
     3541 gaaggtcggc gtgcgtgcag tggagagcaa gatgaacgat atgatgggca aacgtcttac
     3601 cgcgtctgaa cagacccatt ccgtggcgac cgcgtcatga ttcccacagt cgcgcgcata
     3661 accggaacgg gccgcggact tccggcgaga atcttcacca acgacgactt cgcctcgatc
     3721 ggcatcgaga cgtccgacga atggatcatg gagcgcaccg gaatccatga gcgccgcatc
     3781 gcttccgcaa cagagaccac gtgctggatg gccgccaccg catcgcgcca ggcgatgcag
     3841 cgcgcgggcg ttacggctgg tgagatcgac gcgataatcc tgagcaccgc gaccccagat
     3901 cgcctgcttc ccgcaacagc cgtagatctt caggcagagc tcggcgcgac gcgcgcggct
     3961 gcgtttgacg tgtcagcagc ctgttccggc tggctgtacg ggctcgcagt cgccgagggc
     4021 atgatcgcgt ctggcgcgat cgacaccgca ctcgtagtcg gcgctgagaa gatgagcgca
     4081 atcatcgact ggaaggaccg gtcgacctgc gtgttgttcg gcgacgggtc gggcgcggtc
     4141 gtattgcagc gcaacaaggc tggagagcgc gccggcattc tgtccacgtt catgcgcagc
     4201 gacggctgcc tcgcgaatct gctgtaccgc cccgacggcg gcgccgcaaa tccgatgacg
     4261 gccgagatcc tggagaaccg gacgcacctc gtgaagatgg ccggacgcga agtcttcaag
     4321 cacgccgtgc gcgagatgag cgaggccgcc gatcgcgcac tcgactccgc caagctgcgc
     4381 gcagcggata tcgatcttct cattccgcat caggccaaca cacgcatcat cgaagcgacc
     4441 gcgaagcacg cgaatatctc gatggacaag gtgtacgtca acgtggatcg cttcggcaat
     4501 acgtcttccg cgtcgattcc gatcgcgctc gatgaagtca tcgagaagaa gatcgtcggg
     4561 cccggcgcga cggtgatgat ggtcgcgttc ggcgcgggct tcacgtgggc ttccgcgatc
     4621 gttcgcctgt agtcaggaac gatcaccagc gatcgatgaa cgtcatcctg cttttccccg
     4681 gtcagggatc acagaagcaa ggaatgggaa aggatctcgc cgcggcgttt cccgccgccc
     4741 gcgagacgtt ccagcgcatc gacgatacgc tcggcttcgc actgagctcg ctgtgctttg
     4801 atggaccgca ggaagagctg acactcacca ggaacgcgca gccggcgctg tacgcccacg
     4861 gagctgccgc gtgggccgcc gtgcgcgaca tgctcgtcaa ccgcgtagtc gcggccgctg
     4921 ggcattcgct tggcgagctg acagcgtacc atgcggcggg ctcgctccag ctggaatccg
     4981 gcgcgacgct ggtccggaaa cgcggcgaga tcatgttcga catcggctcg gagcgtccgg
     5041 gaaccatggc agcggtgctg ggacatctga ccgtaccgat agacgagctc tgcaagcagg
     5101 cgacccgcga agccggtctc gtcgtaccag ccaattacaa caacgacgaa caggtcgtcg
     5161 tttcgggtga gcccgccggt gtcgagcgcg tgatggaatt ggccaagaca gcgggcgcaa
     5221 agcgatcgct gcgactcgcg gtgagcggcg cgtttcactc gccgttgatg gagcccaccg
     5281 agatcgcatt cagcggcgtg cttcgcgcga ccgagctcgt cgatccggaa tttccggtct
     5341 actccaacgt gaccgccgac gcgtgcacga ccggcgctga agctcgcacg ctgctgctcc
     5401 ggcagttgac gtcgcctgtc agatggtcaa ccgaggtccg cacgatggac gcggcgcatc
     5461 ccgactcgct ctatgtcgag ctggggcctg gcagagtact cggcggcctg gtatcgcacc
     5521 tggtaccggg tgctcgcacg atcgcagtcg gcgcacctgc cgacgtcgac aaactcgccg
     5581 aggcgctggg atgagcattc agatcgatct tgcagggcga aacgcactcg tcaccggcag
     5641 cacgcgcggc atcggtcgcg caattgcgaa tacgctcgcc gaatgcggag cgcgtgtcgc
     5701 agtggttggt cgcgacctcg agcgcagtca aggcgtagca gcagagatcg gtggcggcgc
     5761 gcttggtttc gcagccgacg tcggtgatgt cgccgcggtc gtgaagctcg tggcagatgt
     5821 cgaggcagcg tttggtggca tcgacattct cgtcaacaac gccggactca cgcgcgacaa
     5881 tctgttgatg cgcatcaagg acgacgactg ggatgccgtg atcgacgcga atttgcgcgg
     5941 cgcattcgtc gcgattcgtg cggcgacgcg cggcatgatg aagcgccgct ggggccgcgt
     6001 gatcaacatc accagcatag tcggaatcaa cggcaacaag gggcaggcga actacgccgc
     6061 cagcaaggcc ggtctcatag gcctcaccaa gtcggtcgcc agagagctgg gctcgcgtaa
     6121 cattctggcg aacgctgtag cacccggctt catcgacacg gacatgaccg ccgcgatgac
     6181 gcctgaagca cggtcggcaa tggccggcca gatcccgctg gagcgtctag gggctcccat
     6241 ggatgtcgcc ggagccgtcg cttttctcgc ctcggacctg gcatcgtaca taaccgggca
     6301 ggtgctcgtc gtggacggcg ggatgatcta gtacggcgcg gattcatccg cgtctggccc
     6361 agtcaggagc aatcggattt gccagggatt acatatccaa aggcattcgc aacgctctac
     6421 ctgccctccc ggggcagggt taaattgtaa cgttaccccc aaactgtacg aggatccgca
     6481 tggccgacaa ttcggagaag gtaaaggaca ttatcgccaa cgagcttggc gtggagcgcg
     6541 agaagctcac cgatggcgct tcattcatcg acgatctcgg tgctgacagc ctcgacatcg
     6601 tcgagctcgt gatggaattc gaaaaggaat tcaacatcga gattcccgac gaagacgcag
     6661 agaagctgcg cacggttggt gacgcgctcg cgtatctgaa cggaaaggtc gctgcgtaat
     6721 ggcgcgtagg gtcgtcgtca ccggcatggg cgttgtcacg cccgtcggca actccgtggc
     6781 ggcgacttgg gacgctctca aggctggcac gtcgggcgtc gcgccgatta ccaaattcga
     6841 cgcgagcaaa ttccccgtgc ggttcgccgc cgaggtaaag gatttcaatc ccggcgatta
     6901 catggagcgc aaggaagtca aacgctccga tgtgtacacg cagtacgccg ttgccgctgc
     6961 caagatggcg atgtcggacg ctggcctcag cgaccctgca gcagcgggaa tcgatcccga
     7021 ccggatcggc gtcatcatcg gttcgggaat cggtggcctc aagagtttcg aagagcagca
     7081 cgatgtgtat cgggagctgg gcccgagcaa gatcagcccg ttcttcattc caatgttcat
     7141 cgccgatatt gccgcgggta tcgtctcgat gcagttcaac gcaaagggac ccaactacgc
     7201 gactgtatcc gcatgcgcga cgtccgcgca cgcgatcggc gacgcattca gaacgatcca
     7261 gtacggcgac gccgacgtca tgatcaccgg cggtgccgag gcaacggtta cgccgatggc
     7321 gatcggcggc tttgcgaaca tgaaggccct ttcagagcgt aacgattctc cgtccacggc
     7381 ttcgcggccg ttcgatgcca ctcgcgatgg cttcgtcatg ggcgaggggg caggtatcgt
     7441 catactcgag gagctcgagc atgcgcgcgc gcgcggtgcg accatctacg ccgagatcgt
     7501 cggctacggt gcaacgggtg atgcatatca ccttactgca cccgcacccg acggcgaggg
     7561 tgcacaacgc gcaatgaagc gtgcgatgcg cgacgccaaa ctcggaccgg ccgacgttca
     7621 gtacatcaac gcgcacggta cgtcgacacc cgcgaacgac ctcaacgaga cgcgcgccat
     7681 caaggccgtg ttcggcgagt atgcgaagga tctcaacgtc agctccacca aatctgcgac
     7741 tggtcacatg ctcggcgcgg ccggcgcggt tgaattcgtt atctgcgcac tcgttgtcgg
     7801 tgagggagtg attccaccga ctatcaatta cgagcatccg gatccggagc tcgatctcaa
     7861 cttcacgccc aacgtcgcgg tcacgcggcc tgttaccgcc gcgctgagca atagctttgg
     7921 cttcggcggc cacaacgtca gcctggctgt ccggcgcttc gaggagtaac accctgcatg
     7981 ctcgcgggaa tgacgctgga cctgtcgctc gtcaccgacc ccgcgctgcg cgctgcaggc
     8041 gagaagctct cctcaggcac gagactcgac gcctctgacg gcctcacgct gttcgagagt
     8101 cccgacataa ttggacttgg atcgcttgcc gatcaggtga accgcgcgaa gaacggcgat
     8161 cgcgtcacct tcgcctccaa ccagcacatc aatccgacca acgtctgcta tctgcggacc
     8221 acctgcgtct tctgctcgtt cgcccggctg ccaaaggaag acggtgccta tcattacagt
     8281 ctcgaacaag tgttcgaaga gtcgaattcc acgggtggac tgacccggga gttccatatc
     8341 gtcggcgggc tcgacatgaa ggccggcctg cagtactacg cagacatgtt ccgcggcctc
     8401 aagcagcgtc atcccaacat ccacatcaag gcgctcaccg cggtcgagat cgcgcacatc
     8461 gcgcgcatcg acaagatgtc gatcgaggac gtgctcgtga cgctgcgtga tgccgggctc
     8521 gacacgctgc cggggggcgg cgccgaaata ttcagcaagg cggttcgggc cagcatcgcg
     8581 gaaaagaagc tggtggccga ggactggatc gaggtgcacc gcactgcgca ccggctcggc
     8641 atccgcagca actgcacgat gctgtacggt cacgtcgagt cgatgcagga tcgcgtcgat
     8701 catctcatgc tgttgcgcga tctgcaggac gagaccggtg gttttctcgc ctacgtccct
     8761 ctggcgtatc atccggataa caacgatctc ggtatcgagc ttgggcgtca gggtacggcg
     8821 acatccggtt tcgacgatct gcgcaatctc gccgccggcc gtctcttcct cgacaacttc
     8881 gaccacatca agagtcactg gataatggtg acgccgggcc tgtcgcaggc gtcgctgtcg
     8941 ttcggcgtga acgatctgga aggcaccgtc gtgaaggaga agatctacca cgaggccggc
     9001 gcgcacaccg cgcagggaat gtcgctggat gatctcatca agctgatacg cggcgcgcgg
     9061 cgcgtgcccg tggagcgtga ctcgctgtac aacgtcgtcc gcactttcga cgacgattca
     9121 tcgcagcgcg cggcgtagcg gcatggtcag ccgcatgaag atcggacgca tcccgtacat
     9181 caactgctat cctgtttacg gcgctataga ccgcggcatc atcccgttcg atggcgagct
     9241 cgttgacggc attcctaccg cgct
//
LOCUS       DATIMD010000433         4388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3352118, whole genome shotgun sequence.
ACCESSION   DATIMD010000433 DATIMD010000000
VERSION     DATIMD010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4388
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3352118"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(194..721)
                     /locus_tag="VLI40_09590"
     CDS             complement(194..721)
                     /locus_tag="VLI40_09590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97471.1"
                     /translation="MTAKFISTVLKAASVVTVPLAMLAVSVPAGAQHPGQRNHSEWRF
                     DNGRYNNGRYDYDRHDKWHHKKEHHKNKNKNYKNGYYRNGRYNNGRYGQYPAPVILQR
                     PVYGNRGVPGRVSGKALPAPQRNNGYPSRGATRYPSAPVIPGFPTPITPNGRAGKVLP
                     GAGQQSHEYNTRRRY"
     gene            1018..1488
                     /gene="msrB"
                     /locus_tag="VLI40_09595"
     CDS             1018..1488
                     /gene="msrB"
                     /locus_tag="VLI40_09595"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HSU97472.1"
                     /translation="MDSTRKFQKPSDEELKKKLTPEQYRVTQHEGTERPFTNEYNDNH
                     RAGIYVDVVSGEPLFSSLDKFDAHCGWPSFTKPLDEEGVTTRTDNKLGMTRTEVRSAQ
                     ADSHLGHVFNDGPGPTGLRYCMNSAAMRFVPVEKLEEEGYGEWLKLFHGGQDAR"
     gene            1755..2264
                     /locus_tag="VLI40_09600"
     CDS             1755..2264
                     /locus_tag="VLI40_09600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97473.1"
                     /translation="MHSPRTLALAALPVLLLAACAKKDRTTPELQAAGQPTATPPAKQ
                     PVTACAMVTEAEMSKILGVTVAAEPHEKTSDQTECIYKPASGISPYVDFTLTRGDGEA
                     AMTAAGMMNQHEAGIASPYEGIGDQAVAVGPTLMIRTGEDLVQLVFSGVTDAPAAAKK
                     IFDTAKPRM"
     gene            2266..3426
                     /locus_tag="VLI40_09605"
     CDS             2266..3426
                     /locus_tag="VLI40_09605"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSU97474.1"
                     /translation="MTPSRILAAAVTLALSLAACSGKNTASANTTTERPGDARRSDVP
                     SSGSPAAVATAPMSTSRIPFIVGLRTVSAVSDANGDYESFASIESIASDRYRIVVSAE
                     LKDESGGAPREISVPRWVRMEDVRSSRAMRHYFHTGDAEQFTGTTPGVSTAVMSDLRN
                     TGASRMTFVDVDDVFGMSVVQRTLNGTIKRVEPQAVPVAMLVNDKPTQLPAIHVKGVL
                     SDDDSSDDFEFYILDDPDNPLLLAKTGPGFSSSIIRIDYPEAGGTRQTLETKLAANEP
                     VDVYGIYFSFNRADIRPESDSVLQVIADVMMKNPTWHLRIDGHTDAIGNNVANQILSE
                     KRAAAVKSALVTRYKVDGSRLATGGHGASNPKDRNDTPEGRARNRRVELRRE"
     gene            3477..3962
                     /locus_tag="VLI40_09610"
     CDS             3477..3962
                     /locus_tag="VLI40_09610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97475.1"
                     /translation="MNRTVALALCCVIAACSKPGGEAAATASALVASTSATGAAATDP
                     VCKLYSSADAAHYIGKPAKDGDLSMGGCQWAAQDGVGDMAVQVVPASYDEQPTAAAGY
                     RKLPDVGTNGFVSTFLDGWLAGAVIGKHAIRTSVYGSGVSDATAIALLKETIKRRGNT
                     Q"
     gene            3959..>4388
                     /locus_tag="VLI40_09615"
     CDS             3959..>4388
                     /locus_tag="VLI40_09615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97476.1"
                     /translation="MSLRRSTLACLCMLAAVGGCKRSDAGSSSARVGSTGTPGSAPQN
                     AGGSGSADVKYLPNVRTVEQSDGMRALIAVSTDGSTLVFDKSRGAIPALGVGDVLLIK
                     GLLARKILATEIDGNEIAVLTAPIALGELVADGKITVHAPI"
BASE COUNT          922 a         1297 c         1357 g          812 t
ORIGIN      
        1 ctacatgcag gcgctcaccg accccagggc gcgggatctc accaggttcg taccgaagaa
       61 ggtgccgagc ggactgcccg tggggcagta gcgggagata ctggtggtga tgttgaatgc
      121 agcccccgaa catcgggggc tgcattcaat tcacgtctac gtcacaccag tggcgcgtgg
      181 cgccggtgac gccttaatat ctgcgacgag tgttgtactc gtggctctgc tgacccgctc
      241 caggcagcac ctttcccgcg cggccatttg gcgtgatcgg agtcgggaaa cccggaatca
      301 ctggcgctga cggataccgc gtcgctccac gcgagggata tccgttgttg cgctgcggcg
      361 cgggcaacgc cttcccggaa actcttccgg gaactccacg attgccatac acaggacgct
      421 gcagaattac cggcgccggg tactgaccgt accggccgtt attgtaccga ccgtttctgt
      481 aatacccgtt cttgtaattc ttgttcttgt tcttgtgatg ctctttcttg tggtgccact
      541 tgtcgtggcg gtcgtaatcg tagcggccgt tattgtagcg gccgttgtcg aaacgccact
      601 cggagtggtt gcgctggcct ggatgctgcg caccggctgg cactgatact gccagcatcg
      661 cgagtgggac ggtcaccacg cttgctgcct tgagcacggt actgatgaac ttcgcagtca
      721 taaaattctc ctccggttgg cacactgcta cacctgatcg cttcgttcct tcccgttatt
      781 taacatatac gcgtgcaaac gccatgctaa gcgtccgcgc atgaacattc gcgtgtaatc
      841 gtcgtggacc tgtcagcgaa ctgacaatcc gcgcatcaca gtcgcgtctg cgagcccgta
      901 catgacagga acctgtcacg ggtcctgggc gaatcgctaa atttctcgta tggcgcggag
      961 tggacatgca actgcacttg acggagccgc gcactcttca atctgtgaga gcctgtaatg
     1021 gattcgacga gaaagtttca gaagccgagt gacgaagagc tgaagaagaa actcacaccc
     1081 gagcagtatc gcgtcacgca gcacgaaggc accgagcgtc cgttcacgaa cgagtacaac
     1141 gacaaccata gagctggcat ctacgtcgat gtcgtgtcag gtgaaccgct cttcagctcg
     1201 ctcgacaagt tcgacgcaca ctgtggctgg ccgagcttca ccaagccgct cgatgaagaa
     1261 ggcgtgacga ccagaaccga caacaagctt ggcatgacgc gcaccgaggt acggtctgcg
     1321 caggcggatt cacatctggg ccacgtgttc aacgatggcc ccggaccgac tggtctgcgt
     1381 tactgcatga actcggcggc catgcgtttc gtgccggtgg agaagctgga ggaggaagga
     1441 tacggagagt ggttgaagct gtttcacggt ggccaggacg cccggtagat accgcatgta
     1501 caagccctga ggggccaaca ctctcacttt atagaagaca gcaggcaagg cgcgacccct
     1561 tcgcgcccgg aataaagcag gctggctgag gagcgttccg ctccaatgca tgtggttgcg
     1621 tggtcgtaaa gcgatgcccc gcaacgattt gacgtgtgtt gtcatggcca tgatgtgtgc
     1681 cgcgtaagct tgcccggatt attcaccgga ctcgcggatc cccgccatcg gttcaacact
     1741 caaatccaag acgaatgcac tcgccccgaa cgctggcgct cgcggcgctg cctgtcctgc
     1801 tgctggcagc gtgcgctaag aaagacagga caacgccgga attacaggcc gcgggccagc
     1861 ccacggcgac tccaccggcg aagcaaccgg taaccgcctg cgcgatggtc accgaagccg
     1921 agatgtccaa aatcctcggg gtcaccgtcg ccgcggaacc gcacgaaaag acttcggacc
     1981 agacggagtg catctacaag cccgcgtcgg gaatcagtcc gtatgtcgat ttcactctga
     2041 ctcgtggaga cggagaggcg gcaatgacgg ccgctggaat gatgaaccag cacgaagccg
     2101 gaatcgccag cccgtatgag ggaatcggcg atcaggccgt ggcggtcggg ccgactctga
     2161 tgattcgcac aggggaggac ctcgtgcagc tggtcttctc cggcgtcact gacgcgccgg
     2221 cagcagcgaa gaagatcttc gataccgcaa aaccgcggat gtgacatgac gccgtcacgc
     2281 atccttgctg ctgcggtgac tctggcgttg tcgcttgcgg catgctccgg gaagaacacc
     2341 gcgagcgcca atacgacgac ggaacgaccg ggagatgccc ggcgatcgga tgtcccgtcg
     2401 agcggatcgc ccgccgcagt cgcgacagct ccaatgtcga cgtcgcgcat cccgttcatc
     2461 gtcggactga ggacggtgag tgcagtcagc gatgccaatg gcgactacga gtcgttcgca
     2521 tcgatcgaat cgatcgcgtc ggacaggtat cggatagttg tctccgccga actgaaggat
     2581 gaatccggcg gcgcgccgcg ggagataagc gtgccgcgct gggtacgcat ggaggacgtg
     2641 cgcagcagtc gcgccatgcg gcattacttc cacaccggag acgccgaaca gtttaccgga
     2701 accacgccgg gcgtatcgac cgctgtgatg agcgatctgc gcaacacagg tgcaagcagg
     2761 atgacgttcg tggacgtcga tgacgtcttc ggcatgtcgg tcgtgcaacg aacactgaat
     2821 ggtaccatca agcgcgtcga gccgcaggcc gtgcctgtgg cgatgctcgt caacgacaag
     2881 cctacgcagc tgcctgcgat tcatgtgaag ggcgttctgt ccgacgatga ctcgtcggat
     2941 gacttcgagt tctacatact ggacgatccc gataacccgc tgctgctcgc caagaccggg
     3001 ccggggtttt cgtccagcat catacggatc gactatcccg aagcgggcgg aacgcgccag
     3061 acgctcgaaa caaaacttgc cgccaacgag cccgtggatg tgtacggcat ctacttctcg
     3121 ttcaatcgcg ccgacatccg gccggagtcc gacagcgtgt tgcaggtgat tgccgacgtg
     3181 atgatgaaaa atccgacctg gcatctgcgc atagacgggc acacggatgc tattggaaac
     3241 aatgtggcga accagatcct gtcggagaaa cgcgccgcgg ctgtcaagtc ggcactggtg
     3301 actcgctaca aggttgacgg gagtcgtctg gccaccggcg gccatggtgc ctcgaatcca
     3361 aaagacagaa acgacacccc cgaaggacgc gcacgcaatc gtcgcgtcga attgaggcgc
     3421 gaatgaccat ccagcagatc atccagcaga tcatccaaca tcaacgagga aaagccatga
     3481 accgaactgt tgcacttgct ctgtgctgcg tgatcgctgc ctgttccaag ccgggtggcg
     3541 aagcggcggc cacagcttct gcgctggttg cgagcacgag cgcgaccggt gcggctgcta
     3601 ccgatccagt gtgcaagctc tactcgagcg ccgatgctgc gcactacatc ggcaagccgg
     3661 caaaggatgg tgatctgagc atgggtggct gccagtgggc cgcgcaggat ggagtcggcg
     3721 acatggccgt gcaggtagtt ccggcgagtt atgacgaaca gccgaccgcg gctgccggct
     3781 accgcaagct gcccgatgtc ggcaccaacg gattcgtatc gacgtttctg gacggttggc
     3841 ttgctggagc agtcatcggc aagcatgcga tccggaccag tgtatacggc agcggcgtga
     3901 gcgatgcgac cgccatagca ctgctcaagg aaacgatcaa acgacgcggt aacacgcaat
     3961 gagtctgcgc cgctcgacac ttgcgtgtct ctgcatgctc gccgccgtcg gcggatgcaa
     4021 gaggagtgac gccggtagct ccagcgcgcg cgtaggctcg accggaactc caggcagcgc
     4081 tccgcagaac gccggcggct cgggctcggc ggacgtcaag tatctcccga acgtccggac
     4141 tgtcgagcag agtgacggga tgagagcgct catcgccgtg agcactgacg gatcgacgct
     4201 tgtgttcgac aaatcgcgcg gtgcgatacc agcgctcgga gtcggggacg tgcttctcat
     4261 caaggggttg ctcgcgcgga agatccttgc taccgagatc gatgggaacg agatagcggt
     4321 actcacagcg ccgatcgcgc tcggcgagct cgtcgcagac ggaaagatca ccgtgcacgc
     4381 gccaattc
//
LOCUS       DATIMD010000434         6853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3066539, whole genome shotgun sequence.
ACCESSION   DATIMD010000434 DATIMD010000000
VERSION     DATIMD010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6853
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3066539"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VLI40_09620"
     CDS             <1..180
                     /locus_tag="VLI40_09620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97477.1"
                     /translation="EYRDAGVKWYRTDQNGTVTIRSPGVPGGGYTITPSRPGTDLNGP
                     SDRRASARACSGTEG"
     gene            complement(200..478)
                     /locus_tag="VLI40_09625"
     CDS             complement(200..478)
                     /locus_tag="VLI40_09625"
                     /inference="COORDINATES: protein motif:HMM:NF022659.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3006 domain-containing protein"
                     /protein_id="HSU97478.1"
                     /translation="MTDSNSSSSSPAHGGFTSIWVIDQIENGVAAVEVNGGNVVTMPV
                     EVLPKGIREGDVLRVTILQDPEELARRLALSAAQVAKGGKGGKGNITL"
     gene            592..2091
                     /locus_tag="VLI40_09630"
     CDS             592..2091
                     /locus_tag="VLI40_09630"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSU97479.1"
                     /translation="MDTAEVLSFPPLESDARAHVCIIGAGIAGLTTAYLLTRAGKAVI
                     VIDDGPVGGGETGRTTAHISNALDDRYSSLATLFGDDGARRAAESHTAAIQRIEAIAE
                     LEGIDCDFERLDGFLFLHKGGKSKLLTDELEASHQAGLTDTELVECAPLDTFDTGIAL
                     RFPRQAQFHALRYLNGLARAITRDGGRIYSGTKAKGIEDGKPAKVTTDDGHTIIADDI
                     VVATNSPVNDWMVMHSKQAAYRSYVVGLRVPSDAIPHMLLWDTADPYHYVRVHSADKP
                     GAAYEVLIVGGEDHRTGQAQDMDARFARLEQWARERFPMANDVLYRWSGQIMEPVDSL
                     AFIGRNPGADEHIYIITGDSGHGITHGTIGGILLTDLIMGVDNPWTEIYDPGRIAFRT
                     APHFARENLNVAEQYSSWITPGDVGSIAEIPNDSGAVVRRGVHKLAVYKDASGKISKC
                     SAVCTHLYCIVDWNDTEKTWDCPCHGSRFDPYGKVVNGPAIENLEPVQE"
     gene            complement(2143..>6853)
                     /locus_tag="VLI40_09635"
     CDS             complement(2143..>6853)
                     /locus_tag="VLI40_09635"
                     /inference="COORDINATES: protein motif:HMM:NF028476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HSU97480.1"
                     /translation="DFTFLYDERRKLFSIGYHTSASSFDNSFYDLLASEARLASFMAI
                     AKGDVPVEHWFHLGRSLTSDRGIRALASWSGSMFEYLMPVLVTQSYPFTLLDQTYHGA
                     VRRQILYGVERKAPWGVSESAYNVRDRNQVYQYRGFGVPDLALKRGLNKDLVVAPYAT
                     VLAMLIQPHQAIRNLAILESEGALGPYGFRDAIDYTRPDPGSTRAVVGTYMAHHIGMS
                     LVALTNALQRQVWQRRFHADPLVRSNELVLQERIPRRLVVQRTGNEDEPVPMAPVETA
                     KPAVRETDTPHTSQPSIALLGNVPYTTLITNAGGGYSRYGDIVVTRWRRDTTRDNHGE
                     WIYIKDITSGRVWSAAHQPVAVDADAYHVSFASDRVEFHRRDGDVDTMMEVVVSSDDA
                     AEVRRVTITNRSAVTREFELTSYSEIVLQSLDTDRQHPAFGNLFVQTEWVGEHSAIIA
                     TRRPRSSDEKVYWGAHVVATGPERVGGVSYETDRAKFIGRGKSVRHPDAMEDAATLSN
                     TAGAPLDPIFSLRVRIRVAPGKSVPVSFTTLVAETRERAVELSDLYDDPFSARRALDL
                     SWAQAQAELRDLGIAPSDAAVYQQFAGYLIYPHPQLRPTGTELRDNTRGQQSLWPLGI
                     SGDNPILLATIDAPEGMPSIRQLLQAHHYWRLKGLKSDLVILNERPPSYLQELNDTLT
                     STVMASSEAALIDRSGGVFIRRTDVLKPEDIALIRAMARVHVACDGLGLGSLLEFPDD
                     KKEYAGRPDAPVPPRYARRTANRNASMTPSDSPVTNGFGFFNDAGEYELRLYGTELPP
                     APWANVVANSAAGFVITESGSSCTWAESSFFYRITPWHNDPVRDPCSDCIYLRDDETG
                     DVWTATPAPIREMTEYVVKHGTGYSIFDHQHADIHTSVKIAMATDDPVKLSTLRITNN
                     GRSPKRVTVTSYVEWVLGVSRDLTQQHVYTSYDTETASVIGQNFFDQEYSDLVAFLAM
                     SGDVTSYTADRREFIGRNGTPARPAALSKAALGESVGEVVDPCGALQTSVTVHPGETA
                     EVIILLGAISSMDEARTLIRRYKTVESSVAEVDRSGKAWRDRLATIKVKTPDESFDRM
                     ENGWLLYQALSCRMWGRTALYQSSGAYGFRDQLQDCMAFLYTDVPVARAHILRAASRQ
                     FVEGDVQHWWHPKSGRGVRTRFSDDLVWLPFVVAHYTEVTGDNSVLDEQARFITMRQL
                     APDEHELYDKPEISDESATIYEHCVRALRKACTFGQHDLPLIGSGDWNDGFSRVGIEG
                     KGVSVWLAWFLIATLKRIAEISASRGDTATHDDFLRIAERYRNGIETSTWDGDWYVRA
                     YYDDGYPLGSSKSEEAKIDSIAQSWSVLSGAGNPQRAQSAMASVDQHLVRNDGRLVML
                     LTPPFDKTTHDPGYIKGYLPGVRENGAQYTHAATWVVWAQVMNGNGAHAFELFQMLNP
                     LTHSNTREAVERYKVEPYVVVADIYTADQHLGRGGWTWYTGSASWYYRTGLEGILGFT
                     KRGDRLAMNPCIPPTWDGFTIEYIYQSATYTIEVRNPAHVPRGVKSVTLDGTLVADGT
                     VQLRDDGAHHAVVVTMG"
BASE COUNT         1322 a         2138 c         2035 g         1358 t
ORIGIN      
        1 gaataccgcg acgccggagt gaagtggtac cgcacagatc agaacggtac ggtcacgata
       61 cgatcacccg gtgtgccggg aggtggctac accatcacgc cgtcacgacc gggcactgat
      121 ctgaatggcc cgagcgatcg cagagcaagc gcgcgtgcgt gctccggaac ggaaggttga
      181 tcaccggcca ggaacggcat tacagcgtga tgttgccctt tccgcccttg ccgcctttcg
      241 ccacctgagc ggctgacagc gcaaggcgcc gcgccagctc ctccggatcc tgcaatatcg
      301 tcacacgcag gacgtcgccc tcgcgtattc ccttcggtaa tacttcgact ggcatcgtca
      361 cgacgttacc gccgttgact tcgacggcgg ctacaccgtt ctcgatctgg tcgatcaccc
      421 agatgctcgt gaatcctccg tgcgctggcg aggacgaaga cgagttcgaa tcggtcattt
      481 gtgctccgtg cggacgtggc ataccgaatg ctctggggaa agatatcgaa gggctacctc
      541 aacccctagc aagcgatgta ctctggttcc ggcgcaaccg aatctctctg gatggatacg
      601 gctgaagtac tgtcgtttcc accgctcgaa agcgatgctc gcgcgcacgt ctgtatcatc
      661 ggtgccggta ttgccggcct gactacggcg tatcttctca cgcgtgccgg caaggcggtg
      721 atcgtcatcg acgacggccc ggtcggcggt ggcgagacgg gtcgcaccac tgctcacatc
      781 tccaacgcac tcgacgatcg ttactccagt ctcgcgacgc tctttggcga cgatggtgcg
      841 cgacgcgccg ccgagtcgca tacggctgcg atccagcgca tcgaagcaat cgccgagctg
      901 gagggcatcg actgcgactt cgagcgattg gacggatttc tctttctcca caagggcgga
      961 aagagcaagc ttcttacaga cgagctggaa gccagccatc aggcgggcct gaccgatacc
     1021 gaactggtcg agtgcgcacc actcgacaca ttcgatactg gtatcgcgct acgttttcct
     1081 cgtcaggcgc agtttcatgc gttgagatat ctgaacggcc tggcgcgtgc aataacacgc
     1141 gacggtggcc gcatctattc cggaacgaaa gcaaaaggca tcgaggacgg gaagccggcg
     1201 aaggtgacaa ccgacgacgg ccacacgatc attgcagatg acatcgtcgt cgccaccaat
     1261 tcgcccgtga acgactggat ggtgatgcac agcaaacaag cggcgtatcg cagttacgtc
     1321 gttggactgc gcgtgccgtc cgacgcgatt ccacacatgc ttctgtggga caccgccgac
     1381 ccatatcatt atgtccgcgt tcattccgct gacaagcccg gcgccgccta tgaggtgctc
     1441 atcgttggcg gcgaggacca caggaccggt caggcgcagg atatggatgc ccggtttgcg
     1501 cgcctggagc agtgggcgcg cgaacgtttt ccgatggcaa acgacgttct gtaccgctgg
     1561 tcaggacaga tcatggagcc ggtggacagc cttgcattca ttggaaggaa tccaggcgca
     1621 gacgagcaca tctacatcat caccggcgat tcaggacacg gaatcacgca cggtacgatc
     1681 ggtggcattc ttcttaccga tctgatcatg ggcgtcgaca atccatggac ggagatctac
     1741 gatccaggcc gcatagcttt ccgcacagcg ccccatttcg cccgcgagaa cctgaacgtt
     1801 gccgagcagt attcaagctg gataacaccg ggcgacgtcg gaagtatcgc cgagattccc
     1861 aacgactcgg gcgccgtcgt gcgtcgtggt gtgcacaagc tcgcggttta caaggacgcg
     1921 tccggaaaga tcagcaagtg ctccgcagtg tgcacgcatc tctactgcat cgtcgattgg
     1981 aacgataccg agaagacgtg ggactgtccc tgtcacggct cgcgattcga tccctatggc
     2041 aaggtcgtga acggtccggc aatcgagaat ctggagccgg tgcaggaata accaccggcc
     2101 cgcgcattcc catccgcatt cccatccgca ttcccctccg catcacccca tggtcacgac
     2161 cacggcgtga tgcgcgccgt cgtcacgcaa ctgtaccgtg ccatcagcaa ccagtgtacc
     2221 atccaaggtc acactcttca cgccgcgcgg gacgtgtgcg ggattgcgta cttcgatggt
     2281 gtacgtcgcc gactgataga tgtactcgat cgtgaatccg tcccacgtgg gtggaatgca
     2341 cggattcatc gcgagccggt cgccgcgctt ggtgaagccg agtattcctt cgagaccggt
     2401 gcgataatac cagctcgcgc tgccggtgta ccaggtccag ccgccacgcc cgagatgctg
     2461 gtcagcggtg tagatgtcgg ccacgaccac atacggctcg accttgtagc gctcgacggc
     2521 ttctctcgtg ttcgagtgcg tcagtggatt cagcatctgg aacaactcga atgcgtgtgc
     2581 gccgttgcca ttcatgacct gggcccagac cacccacgtt gcggcatgcg tgtactgcgc
     2641 gccattctcg cggacacccg gcagatagcc cttgatgtaa cccggatcgt gcgtcgtctt
     2701 gtcaaacgga ggcgtgagca gcatgacgag ccgcccgtcg ttccggacaa ggtgctggtc
     2761 gaccgatgcc atcgctgact gcgcgcgttg tggattgcca gcgccggaca acacactcca
     2821 gctctgcgcg atggaatcga tcttcgcttc ctcgctcttg ctcgacccga gtggatagcc
     2881 gtcgtcgtag tacgcacgaa cgtaccaatc gccgtcccag gtactggttt cgattccgtt
     2941 ccggtaccgc tccgcaatcc tgaggaagtc gtcgtgcgtt gccgtatccc cgcgcgaggc
     3001 gctgatctcc gcgatgcgct ttagcgtcgc gatgaggaac cacgcgagcc agacactcac
     3061 ccccttccct tcgataccga cgcggctgaa gccgtcgttc cagtcgccgc tgccgatcag
     3121 gggaagatcg tgctgaccga atgtgcacgc cttgcgcagc gcacgcacgc aatgctcgta
     3181 tatggtcgcg ctctcatcag atatttccgg cttgtcatac agctcgtgtt cgtctggcgc
     3241 gagctgacgc attgtgatga acctcgcctg ctcgtccaga accgaattgt caccagtcac
     3301 ttccgtataa tgcgccacga cgaacggtag ccacaccagg tcgtccgaga agcgcgtccg
     3361 aaccccgcgg ccactcttgg gatgccacca gtgctgcaca tcgccttcca cgaactggcg
     3421 gctggcggcg cgcaggatat gggcacgtgc aaccggaacg tcggtgtaca gaaacgccat
     3481 gcagtcctgc agctgatcgc ggaatccgta cgcaccgctc gactggtaca gtgcggtacg
     3541 cccccacatc cggcatgaga gagcctggta cagcaaccag ccattttcca tccggtcgaa
     3601 cgattcatcc ggcgttttga ccttgatcgt cgcgagcctg tcgcgccatg ccttgccgga
     3661 gcgatccacc tctgcgacgg agctttccac ggtcttgtat ctccggatga gcgttcgcgc
     3721 ttcatccatc gaggagattg cgccgagcag aatgatcacc tcggctgtct cacccggatg
     3781 caccgtcaca ctcgtttgca gcgcgccgca cggatcgacg acctcgccaa ccgattcgcc
     3841 gagcgcggcc ttggacagtg cggcggggcg agccggcgtt ccattccttc cgatgaattc
     3901 gcgccggtcc gcggtgtagc tcgtcacgtc accgctcatt gcaaggaacg caacgagatc
     3961 ggagtattcc tggtcgaaga agttctgacc gatcactgac gccgtttccg tatcatacga
     4021 cgtgtacaca tgctgctgtg tcaggtcacg cgaaacacca agcacccatt cgacgtagct
     4081 cgtgaccgtg acgcgctttg gcgaccggcc gttgttcgtg attctgagtg tgctcagctt
     4141 taccggatca tccgtcgcca tcgcgatctt gacggaagtg tgtatgtccg catgctgatg
     4201 gtcgaagatg gagtagccgg tgccatgctt gacgacatat tccgtcatct cgcgaatcgg
     4261 tgccggtgtc gcagtccaca cgtcgcccgt ctcgtcgtcg cgcaggtaga tgcaatcgct
     4321 gcacggatcg cggacggggt cgttatgcca cggagttatg cggtagaaga agctgctctc
     4381 cgcccacgtg cagctactgc cgctctccgt gatgacgaac ccggcagcgg aattcgcgac
     4441 tacattcgcc cacggcgcgg gtggtagctc cgtgccatag agccgcagct catactcacc
     4501 ggcatcgttg aagaagccga aaccgttagt gaccggcgaa tccgatggcg tcatggacgc
     4561 attgcgattc gcagtgcggc gcgcgtatcg cggtggaacc ggagcatcgg gtcgtccggc
     4621 gtattccttc ttgtcatccg gaaattcgag gagagatccc agtcccagcc cgtcgcacgc
     4681 aacgtgcacc cgcgccattg cccggatgag cgcgatgtct tccggcttga gcacatcggt
     4741 acgccgaatg aacacaccgc ccgagcggtc gatgagcgca gcctcgctcg acgccatgac
     4801 cgtcgatgtg agagtgtcgt tcaattcctg cagatacgac ggtggccgct cgttcaggat
     4861 cacgagatcg gacttgagcc ccttcaatct ccagtagtga tgtgcctgca acagctgcct
     4921 gatgctcggc attccttccg gtgcgtcgat ggtcgcgagc aggatcggat tatctccgga
     4981 gatgccgagc ggccagagcg attgctgtcc acgagtgttg tcgcgcagct cggtgccggt
     5041 cggccgcagt tgcggatgtg gatatatcag atagccggcg aactgctggt acacagctgc
     5101 gtcactcggc gcgattccga gatcgcgtag ctcggcctgc gcctgtgccc agctcagatc
     5161 gagtgcacga cgtgcgctga acggatcgtc atacagatcc gacagctcga cagcacgttc
     5221 ccgggtctcc gcgacgagtg tggtgaagct caccggcacg gatttaccgg gcgcgacacg
     5281 aatgcgaacg cgcagcgaga agattggatc gagcggcgcg ccagctgtgt ttgacagcgt
     5341 ggcggcgtct tccatcgcat cggggtgccg cacggacttt ccacggccga tgaactttgc
     5401 gcgatccgtc tcgtagctca cgccgccgac acgctcggga ccggtcgcga ctacatgggc
     5461 tccccagtac accttttcgt cggacgaccg cgggcggcgc gttgcgatga tcgcggaatg
     5521 ctcgccgacc cattcagtct gaacgaagag attgccgaat gcgggatgct gtctgtcggt
     5581 atcgagcgat tgcagcacga tctcggaata gctcgtgagc tcgaactccc gcgtcacggc
     5641 ggatctgttg gtgatcgtga cgcgccggac ttctgccgca tcatcggacg ataccacgac
     5701 ttccatcatc gtatcgacgt cgccgtcgcg gcgatggaac tcgacgcgat cgctcgcgaa
     5761 tgaaacgtga taggcgtcag cgtcgacagc gaccggctgg tgggccgcac tccacacgcg
     5821 cccgctcgtg atgtccttga tgtatatcca ctcaccgtgg ttgtcgcgcg tcgtgtcgcg
     5881 acgccagcgt gtcaccacga tgtcgccata gcggctgtag ccgcctccgg cgttggtgat
     5941 cagcgtggtg tacggaacgt ttccgagcag cgcgatgctt ggttgcgagg tgtgcggtgt
     6001 atcggtctcc cgtaccgccg gcttggcggt ttcgaccggg gccatcggaa ccggttcgtc
     6061 ctcgttgccg gtgcgctgca ccaccagtcg tcgcggaatg cgctcctgaa gcaccagctc
     6121 gttcgagcga accagaggat ccgcatggaa gcgccgctgc cacacctgtc gttgcaacgc
     6181 gttggtaagc gctacaagac tcattccgat gtggtgcgcc atgtacgttc caaccactgc
     6241 gcgcgtggat ccaggatccg gacgcgtgta gtcgatcgcg tcgcggaagc cgtacggccc
     6301 gagggcccct tcactctcca ggatggcgag gttgcggatt gcctggtgcg gctgaatcaa
     6361 catcgcgagc accgtagcgt acggggcaac gacgaggtcc ttgttgagac cgcgcttcaa
     6421 tgcgagatcg ggcaccccga agccgcgata ctgatatacc tgattccggt cgcgcacatt
     6481 gtacgccgat tccgaaactc cccacggtgc ctttctctcc acaccgtaca gaatctgccg
     6541 ccgcacggcg ccgtgatacg tctgatccag cagggtgaac ggataggact gcgtcacgag
     6601 taccggcatc agatactcga acatgctgcc actccacgac gcgagcgcac gaatgccccg
     6661 atccgacgtg agcgagcgtc ccagatgaaa ccagtgctcg acgggaacgt cacccttggc
     6721 gatcgccatg aacgacgcca ggcgcgcttc ggacgcaagc aagtcgtaga acgaattgtc
     6781 aaacgagctt gcgctggtat ggtatccgat ggagaacagc tttctgcgct catcgtacag
     6841 aaatgtgaag tcc
//
LOCUS       DATIMD010000435         2166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1623890, whole genome shotgun sequence.
ACCESSION   DATIMD010000435 DATIMD010000000
VERSION     DATIMD010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1623890"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..1878)
                     /locus_tag="VLI40_09640"
     CDS             complement(58..1878)
                     /locus_tag="VLI40_09640"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSU97481.1"
                     /translation="MIQSWSPESSPAFAAAGAELAAVLLQISVTLGLMVVCAWQYREY
                     RKPVFAWWSLAWGLYVVRLAAIGAFIFTRESMLLYWHQVFTGWTALAVLATALVFSGS
                     FRRRRWHVVAILFPPIWSYFAVYHLGAYTLASVPMVLFLSCATLWTGVVFYRYARGTR
                     SIGATVLAAAFFVWGVHHLDYPLLRAYGAWLPWGYYVDVLLTITVGAGILLLVTDDLR
                     RGVGTLGTLSSDLMSAASSSRERVVATVLQRIVSVPAVSGAAVFRLDPAGEGYFELGV
                     GACESWSGTTPTGSQAELLSQVAAGAQRAFIAPEWSAVADAIGDGLAFPFAAVLPVEE
                     RGAEGGGSALVIVAEDHVPFAALDANFLTALGRQMGGTLENSRLYTALQQRTADLERL
                     STRMVLQQEDERRRLSRELHDETAQLLSAVKMELAILRDVVPASDAGRVDEALALTDA
                     GIRSIRAVIHDLRPSLLDDLGLVPALRSVATAFAQRSGTEVRLDLPPAREFPALEDGA
                     DLAFYRALQEALSNIGRHAGASTVDIALNCDDGNVRLTVVDNGCGLPMARDAAARSGM
                     GLIGMRERFASLGGTVDLSDKPGGGAQLTASLPLDAGVIA"
     gene            complement(1984..>2166)
                     /locus_tag="VLI40_09645"
     CDS             complement(1984..>2166)
                     /locus_tag="VLI40_09645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HSU97482.1"
                     /translation="AEDLRTGNRRHTNECWLTFVHLGDDGKPAPVPPLILETETDHHL
                     HGIAARRREQLLAERN"
BASE COUNT          443 a          718 c          660 g          345 t
ORIGIN      
        1 ccacgagaac ccttatgtca tgcgtcgtgt cgggcgtcac gtcctgcgtc accgcggtca
       61 cgcgatcaca cctgcgtcca gcggtaggct ggcggtgagc tgagcaccgc cgccgggttt
      121 gtcgctaagg tcgacggtac cgccgagtga tgcgaatcgc tcgcgcatcc cgatgagccc
      181 catgccggag cgcgctgccg catcgcgcgc catgggaaga ccacacccgt tgtcgacgac
      241 agtcagcctc acgttgccat catcgcagtt gagcgcgatg tcgactgtgg acgcacctgc
      301 gtgccggcca atgttcgaca gcgcctcctg cagcgcgcga tagaacgcga gatctgcacc
      361 gtcctcgagc gcgggaaact ctcgcgccgg cggaagatcg agacgcactt cggtgccgga
      421 tctctgcgcg aacgcagtcg cgacggatcg cagcgcggga acgaggccaa gatcatccag
      481 caatgacgga cgcagatcgt gaatcacggc gcggatgctg cggatcccgg cgtctgtcaa
      541 cgccagcgct tcatccacgc ggcccgcgtc tgacgcgggc acgacatcgc ggagaatcgc
      601 cagctccatc ttcacggcgg agaggagctg cgccgtttcg tcgtgcagct cgcgcgacag
      661 ccggcgccgt tcgtcttcct gttgcaacac cattcgtgtc gagagtcgct cgagatcggc
      721 ggtacgctgc tgcagcgcgg tgtacagtcg cgaattttcg agagtgccgc ccatctgacg
      781 gccgagcgca gtgagaaagt tcgcgtcgag cgcggcgaac ggaacatgat cctcggcgac
      841 gatcacgagt gcgcttccgc caccttcagc cccccgctcc tctaccggca gaaccgcggc
      901 gaacggaaat gcgagcccgt caccgatcgc gtccgcgacg gcgctccatt ccggcgcgat
      961 gaatgcgcgt tgggcgcccg ccgcgacttg cgacagcagc tcggcctgcg atcccgtcgg
     1021 cgtcgttcca ctccagcttt cacacgctcc gacgccaagc tcgaagtacc cctcgcccgc
     1081 tggatccagc cggaacacag cggcaccgct gaccgccggc acggaaacaa tgcgctgcag
     1141 aaccgtagca acgacgcgct cgcgcgacga cgatgcagcc gacatcagat cagatgagag
     1201 agtgccgagt gtgccgacgc cgcggcgcag atcgtcggtg acgagcagca gaattcccgc
     1261 accgactgtg atcgtgagga gtacgtcgac gtaatatccc cacggaagcc atgcgccgta
     1321 cgcacgcagc aacggatagt cgagatgatg tacgccccac acgaagaatg ccgccgccag
     1381 aacagtcgca ccgatcgagc gcgtgccgcg cgcgtaacga tagaatacga ctcccgtcca
     1441 cagcgtggcg cacgagagga acagcaccat cggaacggat gcgagcgtgt acgcaccgag
     1501 gtggtaaacg gcgaaatacg accagattgg cggaaacagt atcgcgacga cgtgccagcg
     1561 ccgtcgtcgg aagctgcccg agaatacgag ggcagtcgcg aggacggcga gcgctgtcca
     1621 gccagtgaag acctgatgcc agtagagcag catcgattcg cgcgtgaata tgaacgcgcc
     1681 gatcgctgcg agtcgcacca catacagtcc ccacgcaagc gaccaccacg cgaacaccgg
     1741 cttgcggtac tcgcggtact gccaggcgca gaccaccatg aggccgagcg tcaccgaaat
     1801 ctgcaacagc acggccgcca gttcggcgcc tgctgcggca aatgctgggc ttgactccgg
     1861 cgaccaactc tggatcatcg acctcgactg agagaaaact tacccgaata attctctcgg
     1921 tattatatcg ccagtgatgc ctcaggcaaa gtcacaaatg ttattgaaac ggcgacggcc
     1981 tctctaattc cgttccgcca gcaactgttc ccttcgtctc gccgcgatcc catgcaggtg
     2041 atggtccgtt tcggtctcga ggatcagcgg cgggaccggc gcgggcttgc cgtcgtcgcc
     2101 aagatgaaca aaggtcagcc agcactcgtt cgtatggcgc cggtttccag tcctcagatc
     2161 ctcggc
//
LOCUS       DATIMD010000436         6288 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1623963, whole genome shotgun sequence.
ACCESSION   DATIMD010000436 DATIMD010000000
VERSION     DATIMD010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6288
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1623963"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..477)
                     /locus_tag="VLI40_09650"
     CDS             complement(<1..477)
                     /locus_tag="VLI40_09650"
                     /inference="COORDINATES: protein motif:HMM:NF014919.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97483.1"
                     /translation="MAEHIDDPDDLMDDLDGLDAAEQRLVARLRAPVVVDASAFDARV
                     MAAVEREPAFGRSNRRATRHATGHATRRMVAAISVAGFAMVAVVAFIMIRGAGERTVP
                     GNHPVTVVRSAVSNVRFTLVASGASAVAVAGSFNGWSTAATPLRRIDKNTWTADIPL"
     gene            complement(470..1051)
                     /locus_tag="VLI40_09655"
     CDS             complement(470..1051)
                     /locus_tag="VLI40_09655"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSU97484.1"
                     /translation="MPITAETAQDRAWHAATVARVLQGDVSAYSELVARHRDRLLRYA
                     MRMLCDSDEADDVTQETFVRAYRSLATCEDPSRFGGWIFSILANRCRTAGARRARREA
                     VFISTAMDVDEWAEYSEPSGVDATVPSAERVERALMGLNAAHREAFLLKYVEDLSYDE
                     ISVLTGAGVSALKMRVSRAREFLRASLQELADG"
     gene            complement(1105..3048)
                     /locus_tag="VLI40_09660"
     CDS             complement(1105..3048)
                     /locus_tag="VLI40_09660"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HSU97485.1"
                     /translation="MNRIRALMIKSSRKLGRPVVNAAGWIRTMRTTPEVALDTVRRRL
                     ELLLAATYGVRFEIAPLADDTPRNTFHVGRRRPMARHDGVAIKLPATMDASDGTQAAI
                     ARYRLLAIEQAMRIMRGSAALAPTGNAIARDLYNLREGAEIDASIAISAPGVASLIAE
                     ERARAVAARPNLSRLSAREQAVEQLVQTVLKADPAAIPEDVRAGASPEDSLAWAHARV
                     RAIESLTGQYRPLKPIAVWGETLDAAGAAAAQGPQYGALVPPSPGYGSGESAAPSAGA
                     DDTLQELTPTGNDAARLPDNSVDQNDPDHALVLDDASTTGDTDPDADGGRAGRKGALN
                     VTDAAILEASRSGDGILYPEWDCNASAYRELGAVVHARRAPQGDSAWSDRVLGEHPAL
                     VRRVRREFERLRSRRVRLLRQREGDELDLAACVRALTDATAGDSSDDRLYMSVRAARR
                     AIAIAILVDVSASTRDVVTDGRSVIDIEKTTLLIASEAFDALGDSYSILSFSGVGAAD
                     VRVATLKPFSEPNSDAVRRRIAGIEAGGNTRLGAAIRHATAVLAAQPAGHRLLLILSD
                     GKPNDVDRYFTTYAVEDSRQAVFDARADGIYPFCLTIDANDRDPYLARVFGTAGHTVL
                     RNPEHLPVALLDLVRDLLRGGGR"
     gene            complement(3058..3879)
                     /locus_tag="VLI40_09665"
     CDS             complement(3058..3879)
                     /locus_tag="VLI40_09665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018286761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbbQ/NirQ/NorQ/GpvN family protein"
                     /protein_id="HSU97486.1"
                     /translation="MTISEPTIAAPIAAVQSTEPYYVAIGHEVEIFERCHRRGLPVLL
                     KGPTGCGKTRFVEHMAWRLGRPLVTVACHDDLSASDLTGRYLIRGGETLWMDGPLAVA
                     ARLGAICYLDEVVEAREDTVVVIHPLTDDRKLLPIDKTGEMIVAAPGFQLVASYNPGY
                     QHAIKDLKPSTRQRFVSLDFDYPAATTEAQIVAHESGVKSSVAASLVEVAHRVRRLRD
                     QGLAEGPGTRLLVSAGRLIAEGIPSGRACQVAIGAALTDDPDLLSAIGDIIDTTM"
     gene            3967..5793
                     /locus_tag="VLI40_09670"
     CDS             3967..5793
                     /locus_tag="VLI40_09670"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HSU97487.1"
                     /translation="MSERAHRTAAITAERTLLAVERTWTAITAWFNGKALSENAVLLI
                     FAVVTGLLSALGVVAFYKGIDLAYWVFYRFPTAEFPRFALFTYRPVVTAAGLAVAWWV
                     MRHIGRGHEGMNVPDVQLAVVRRGGDIEVRPALARTAASAITIGAGGSAGNEGPVVVL
                     GAMIGSWLGRTFRFAPSRVVVLVGCATGAAISAAFNAPLAGAFFALEEVVGTLAAGSF
                     APVVVSSVVAAVVSRSVFGNHPAFAIPRQYGYAHASELLLLYPLLGVVCGLIAALYVR
                     TYFAAGDVQKKIPLPPSLIPWIGGATVGLLVFASGGRLVGYGHLAMHSDIFGELAWYG
                     LLALALGKIVATAITLNMGGSGGVFTPSLYIGAATGGAFGAALSAVFPALGLHPEAYA
                     LVGMGALIAGATDAPITGILLVFEMTNDYAIVIPLMLTVVITHTIARRLSADSLYSGW
                     LRRRGESIEQGADRDVLAGLHVSDAYESAPQVIFEGAAVDELLAHLGNTRQLYFPVVD
                     ESYGLVGVITVADLGQLARNDEYLGPLLVASDIAQPSETVSPGDSLLEAIRKMGVRGA
                     ESIPVVDRHTSRLLGIINRSHVLNLYERTVSSLRRHPHQPAH"
     gene            complement(5816..>6288)
                     /locus_tag="VLI40_09675"
     CDS             complement(5816..>6288)
                     /locus_tag="VLI40_09675"
                     /inference="COORDINATES: protein motif:HMM:NF021921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipoate protein ligase C-terminal
                     domain-containing protein"
                     /protein_id="HSU97488.1"
                     /translation="SIRSRVVNISEFLKRPITVTELRELIIERIFGTRDRSRIPTLEL
                     DAADWAEVDALVKRKYGSWDWNYGENPPCNVQRAHRFTAGEIDVRVNVEGGRVAAVRI
                     FGDFMGREDVAELEALMVGVPYDYASISAALADVDLDSYFGDIPPSEALALLAG"
BASE COUNT         1114 a         2089 c         1915 g         1170 t
ORIGIN      
        1 gagcggaatg tcggcggtcc aggtgttttt gtcgattcgg cgaagcggcg tcgctgccgt
       61 gctccaacca ttgaagcttc cagcaaccgc aaccgcggac gcgcccgacg caaccagcgt
      121 gaaccggacg ttgctgaccg ccgagcgcac gaccgtcacc ggatggttcc ccggaacggt
      181 gcgctcgccg gcgccgcgta tcatgatgaa tgcgaccacg gcaaccatcg caaaaccagc
      241 aacagagatc gccgcaacca tgcgacgcgt tgcatgaccg gtcgcatgac gggttgcgcg
      301 gcggttcgat cgaccgaacg cgggctcccg ttccaccgct gccatcacgc gcgcgtcgaa
      361 tgcactcgcg tccaccacaa ccggcgcgcg gagccgagcg accagtcgct gctccgctgc
      421 atccagaccg tccagatcgt ccatcagatc gtccgggtcg tcgatgtgct cagccatctg
      481 ccaactcctg caacgacgca cgtaaaaact cccgtgccct gctgacgcgc atcttcaatg
      541 ctgacacgcc cgcgccggta agcacggaga tctcatcgta actcagatcc tcgacatact
      601 tgaggagaaa cgcttcgcga tgtgctgcgt tcagtcccat caacgcgcgt tcgacccgtt
      661 cggccgacgg taccgtcgca tccacaccgc tcggctcgga atactccgcc cattcatcga
      721 cgtccatggc cgtcgagata aataccgcct cgcgtcttgc gcggcgggca ccggccgtgc
      781 ggcaccgatt tgcgagaatg ctgaagatcc agcctccaaa gcgcgacgga tcctcgcacg
      841 ttgcgagcga gcgatacgca cgcacgaacg tttcctgggt cacgtcatcg gcctcgtcgg
      901 agtcgcacaa cattcgcatc gcatatcgta gaagtctgtc ccgatgccgc gccaccagct
      961 cggagtacgc cgacacgtca ccctgcaata cccgcgcgac agtcgcagcg tgccacgcac
     1021 gatcctgggc ggtttcagcg gttatcggca tcggcacgga ttcaaagata cgaccctggc
     1081 acgggctcgg gcgtcacatc gcccctagcg gccgccgcca cgcagcaggt cacgcaccag
     1141 gtcgagcagc gcgacgggaa ggtgttccgg gttgcgtaga actgtgtggc ccgccgttcc
     1201 gaacacgcgt gcgaggtacg gatcgcggtc gttcgcatcg atggtaaggc agaatggata
     1261 gatcccgtcg gcgcgtgcgt cgaatacggc ctgccgcgaa tcctccacag cgtacgtcgt
     1321 gaagtaccgg tccacgtcgt tcggctttcc atccgacaga atgaggagca gacggtggcc
     1381 cgccggctgt gccgcgagca ctgcggtcgc gtgacgaatg gctgcaccaa gccgggtatt
     1441 tccgccggcc tcgattccag cgatgcgccg cctgaccgcg tcgctgtttg gttcgctgaa
     1501 cggtttgagc gtggcaacgc gaacatcggc cgcgccaaca ccggaaaagc tgagaatcga
     1561 gtacgaatcg ccgagcgcat cgaaagcctc gctcgcgatg agcagcgtcg tcttctcgat
     1621 gtcgatcacg ctgcgcccat ccgtaacgac atccctcgtg gacgcgctca cgtcgacgag
     1681 gatggcgatg gcaatcgcac gccgcgcggc gcgaaccgac atgtacagcc ggtcatcgga
     1741 cgaatcaccg gccgttgcat ccgtgagtgc gcgcacgcac gcagcaaggt cgagttcgtc
     1801 tccctcgcgc tgacggagca agcgcactcg ccgcgacctg agccgctcga actctcgccg
     1861 cacgcggcgc accagcgcgg gatgctcgcc gagcacacga tcggaccatg cgctatcacc
     1921 ctgtggtgca cgccgcgcgt gtactaccgc gccaagctca cgatacgccg acgcgttgca
     1981 gtcccactcg ggatacagga ttccatcacc tgaccgcgat gcctcgagaa tggcagcgtc
     2041 ggtgacattc agcgcacctt tacgtcccgc cctgccaccg tcggcatcgg gatccgtgtc
     2101 accggtggtc gatgcgtcgt ccaggacaag cgcatgatca gggtcattct gatcgactga
     2161 attgtccggc aacctggcgg cgtcattgcc agttggcgtg agctcctgaa gtgtgtcgtc
     2221 agcaccggcc gacggcgcgg cgctttctcc ggagccatag cctgggctcg gcggaacgag
     2281 cgcgccatac tgcggcccct gcgccgctgc tgcaccggcg gcgtcgagcg tctctcccca
     2341 cactgctatg ggtttgagcg ggcgatactg gccggtcagc gactcgatcg cacgcactcg
     2401 ggcgtgtgcc catgcgagtg aatcttcggg agacgctccg gcgcgaacat cctcgggaat
     2461 cgcggccgga tccgccttca gcactgtctg cacgagctgc tcgaccgcct gctcacgcgc
     2521 actcaatctc gagagattcg gccgagccgc aacggcgcgc gcacgttcct ccgctatcag
     2581 tgatgccaca cccggcgcgc tgatcgcaat ggacgcatcg atctccgcgc cttcgcgcag
     2641 gttgtagagg tctcgcgcga tcgcattgcc ggtcggtgca agcgcggcgc ttccacgcat
     2701 gatgcgcatc gcctgctcga ttgccaacag ccggtaacgc gcaatcgccg cttgcgtacc
     2761 gtcggacgca tccatcgtgg caggcagctt gatcgccact ccatcgtgtc gcgccatggg
     2821 gcgtcgccgt cccacgtgaa acgtgtttcg tggtgtgtca tccgccagcg gtgcgatctc
     2881 gaatcgcacg ccatacgttg ctgcgagcaa cagctcgagt cgtcgccgca ccgtatcgag
     2941 cgccacctcg ggagtcgtgc gcatcgtgcg tatccagcct gcggcattca caacgggtcg
     3001 ccccagcttg cgagacgact tgatcatcag cgcgcgtatc cgattcacgg tcgcattcta
     3061 catcgtcgtg tcgatgatgt cgccgatggc ggagagcaga tccggatcgt ccgtgagcgc
     3121 agcgccgatc gcaacctgac acgcacgtcc actcggtatc ccctcggcaa tcagtcgtcc
     3181 tgccgatacg agcaacctcg tgccaggacc ttccgcgagc ccctgatcgc gcaaccggcg
     3241 aacgcgatga gcaacctcta ccagcgacgc tgcaacggag gatttcacgc cactttcgtg
     3301 cgccacgatc tgtgcttccg tcgtcgccgc gggatagtcg aaatcgaggg acacgaaccg
     3361 ttgcctcgtg ctcggcttga gatccttgat cgcgtgctga tagcccggat tgtacgaagc
     3421 gacgagctga aatcccggcg ccgcgacgat catctcaccg gtcttgtcga tcggaagaag
     3481 tttgcgatcg tccgtgagcg ggtgaatcac gacgaccgta tcctcgcgcg cctcgaccac
     3541 ctcgtcgaga tagcagatcg cgccaagtct ggcggccaca gcgagcggcc cgtccatcca
     3601 taaggtctcg ccgccacgaa tgagatagcg gcccgtgaga tcactcgccg aaagatcgtc
     3661 gtggcatgca acggtgacga gcggccggcc cagccgccat gccatgtgct ccacgaagcg
     3721 cgtcttgcca catcctgtgg gacccttgag caacaccggc agcccgcgcc gatggcagcg
     3781 ctcgaatatc tcgacctcat ggccgatcgc cacgtagtac ggttccgtac tctgcacagc
     3841 ggcaatgggc gcggcgatcg ttggttcaga gatcgtcatg gtgccctcaa gctattgggg
     3901 cgccgtcggt tacggaacag gccccgtgta atgagaatgt ttgtggtcgc tgttacattc
     3961 cgcagcatgt ccgagcgagc gcaccgcacc gcggcaatca ccgcggaacg cacccttctc
     4021 gcggtcgagc ggacgtggac cgcgatcacg gcgtggttca atgggaaggc gttgagcgag
     4081 aatgcggttc tgctcatctt cgccgtcgtg acgggcctcc tgagtgcgct cggcgtcgtc
     4141 gcattctaca agggcatcga cctcgcgtac tgggttttct accgctttcc gacggccgaa
     4201 tttccgcgct ttgcactgtt cacctaccgg ccggtagtga ccgccgccgg tctcgcggtg
     4261 gcgtggtggg tgatgcggca cataggacgc ggccacgaag gaatgaacgt tcccgacgtg
     4321 cagctggccg tggtcagacg aggcggtgac atcgaagtca gacccgcgct cgcacgcacc
     4381 gccgcgagcg cgatcacgat cggtgccggc ggctccgcag gtaacgaggg tcctgtagtc
     4441 gtgctcggcg cgatgatcgg atcgtggctc ggacggacct ttcgcttcgc tccatcgcga
     4501 gtggtggtgc tggtgggatg cgcaaccggg gcggccatca gcgcggcgtt caacgcaccg
     4561 ctggcaggag ctttcttcgc gctcgaggag gtcgtcggca cactcgcagc cggctcgttt
     4621 gcaccggtag tggtttcgag cgttgttgca gcagtcgtgt cgcgctccgt gttcgggaac
     4681 catcccgcgt tcgcaattcc gcgccagtac ggatatgcgc acgcgagcga gctgctgctg
     4741 ctgtatccgt tacttggtgt ggtctgtggc ctgatcgcgg cgctgtatgt gcgcacatac
     4801 ttcgccgcag gtgatgtgca gaagaagatc ccgcttccgc cgtcgctcat tccgtggatc
     4861 ggcggcgcga cggtcggcct tctcgttttc gcgtccggcg gccggcttgt cggatacggc
     4921 cacctcgcga tgcacagcga catctttggc gagctggcct ggtatggatt gctcgcgctt
     4981 gcgctcggca agatcgtcgc gacggctatc acgctcaaca tgggcggatc tggcggcgtc
     5041 ttcacaccat cgctgtacat cggcgccgcg actggcggcg cttttggcgc cgcattatcg
     5101 gccgtcttcc ccgcgttggg gctgcatccg gaagcgtatg cgctggttgg catgggcgcg
     5161 ctcatcgcgg gtgctacaga cgctccgatc accggaatac tgctcgtgtt cgagatgacg
     5221 aacgactacg cgatcgtaat cccgctgatg ttgaccgtcg tcatcacaca taccattgcg
     5281 cgccggctca gcgcggactc actctacagc ggctggctgc gccgtcgcgg cgagtcgatc
     5341 gagcagggcg ccgatcggga cgtactcgcc ggactgcacg tgtccgatgc gtacgaatca
     5401 gcgccgcagg tgatcttcga gggcgccgct gtcgacgagc tgctcgcgca ccttggcaat
     5461 acccgtcagc tgtattttcc cgtcgtggac gagtcgtacg gactcgtggg cgtcataaca
     5521 gtcgccgatc tcggccagct tgcgcgcaat gatgaatacc tgggaccgct gctggtagcg
     5581 agtgacatcg cgcaaccatc cgaaaccgtg tcacccggcg attccctgct cgaagcgatt
     5641 cgcaagatgg gagtgcgcgg cgcagaatcc attccggtgg tggatcggca cacgagccgg
     5701 ctgctcggca tcatcaaccg aagtcacgtg ctcaatctgt acgagcgcac cgtatcatcg
     5761 ctgcgccggc atccgcatca gccggcgcat tgacatgtgc attgacgggc gccagtcacc
     5821 cggccagcag tgccaacgcc tcgctcggcg ggatgtcgcc gaagtaactg tccaggtcga
     5881 cgtcggcgag cgcggctgat atcgatgcgt agtcgtacgg aacaccgacc atcagcgcct
     5941 cgagctctgc aacgtcttca cgtcccatga agtcaccaaa gatgcgaacc gcagcgacac
     6001 gcccaccctc gacgttcacg cgcacatcga tttcgcccgc cgtgaaccgg tgcgcacgct
     6061 gcacgttgca cggcggattc tcgccgtaat tccagtccca cgacccgtac ttccgcttta
     6121 ccagcgcatc cacttcggcc cagtcggccg cgtccagctc cagtgtcggg atcctgctcc
     6181 tgtcgcgcgt tccgaagatt cgttcgatga tgagctcgcg cagctccgtg acagtgattg
     6241 gacgtttaag aaattcactt atattcacga cacgactgcg aatcgact
//
LOCUS       DATIMD010000437         2086 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4802692, whole genome shotgun sequence.
ACCESSION   DATIMD010000437 DATIMD010000000
VERSION     DATIMD010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4802692"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1971
                     /locus_tag="VLI40_09680"
     CDS             <1..1971
                     /locus_tag="VLI40_09680"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU97489.1"
                     /translation="QGQTLRDRMRDEGQLPVDAAVRLVQEVADALDYAHRHDVVHRDI
                     KPENILLHEGHALVADFGIGKAIIAAAASGVTTLTQVGVTVGTPAYMSPEQAAGDEID
                     GRSDLFALGCVLYEMLTGEAAFTGSTVQAVIAKRFHYSPPSASTIRPTVPAGVSHTIE
                     RLLERDPAARISTGALVIAALREQDTAPTAQTPRRAEQSVAVLPFANMSASADDDYFA
                     DGITEEIINLLAQLNGLRVAARTSCFAFKGKNEDLRIVGEKLGVQHVLEGSVRKAGPH
                     VRITAQLINAADGYHVWSERYDRNLVDIFALQDDIANSIATKLQLSLLDAPDRAVART
                     GLRNVEAYELLLKGRVLLRQRGPATLDALACFQRAVALDPELVEAHALLADAYRLIWI
                     YGMAPASETVPQARAAIARALNLDSDDPQALSTLSNIASTYDMDVERCLALADRVFAR
                     EPLRVETLCERGFVVALRRDSSPESLAEALHYIRMARGADPLNAWAAAIEAMSLACIE
                     NYEDAVREARHAVALDPLAFTGRWALVWCLAAIGKDDEAIAAATEALLMSGRHPRILA
                     DVAAIHARRGERRAALEILEELRGRAAMGFVERSVLGSVAASSGLMVEARTLVARGIA
                     EHETFWHFAKSPAWAPFRADSEGAAMLHTLGF"
BASE COUNT          390 a          635 c          675 g          386 t
ORIGIN      
        1 cagggacaga cactgcgcga ccgcatgcgt gacgaaggtc aactccctgt tgatgccgca
       61 gtacgcctgg tgcaggaagt ggcagacgcg ctcgattacg cgcatcgtca cgacgtggtg
      121 caccgcgata tcaagccgga aaacatcctc ctgcacgagg gccacgcgct cgtcgctgac
      181 ttcgggatcg gaaaggcaat tattgctgcc gcagcgagtg gtgtgacgac gttgacccag
      241 gttggcgtca ccgtcggaac gcccgcgtac atgagtcccg agcaggctgc gggtgatgaa
      301 atcgacggac gcagcgatct gttcgcgttg ggttgcgtgc tgtatgagat gttgacaggc
      361 gaggctgcgt tcacaggttc tactgttcag gccgttatcg caaaacgttt tcattattct
      421 ccaccatcag ctagcacgat aagaccgacg gtgccggctg gcgtcagtca tacgatagaa
      481 cgcctgttgg agagagatcc ggcggcgcgt atatcaaccg gggcgttggt tatagcggcg
      541 cttcgtgaac aggatacggc gccgacggca caaactccgc ggcgcgccga acagtcggtg
      601 gcggtccttc cgttcgctaa tatgagcgcg agcgccgacg acgattattt cgccgacggc
      661 atcaccgaag agattatcaa tctgctcgca cagctcaatg gcctgcgcgt tgccgcgcgt
      721 acctcgtgct tcgccttcaa gggaaagaac gaagacctcc gtatcgtggg ggagaagctc
      781 ggggtacagc acgtcctcga gggaagtgtg cgcaaggctg gtccacatgt gcggatcacg
      841 gcacagctca tcaacgcggc cgacggttac cacgtctggt cggagcgcta cgaccgtaat
      901 ctcgtcgaca tcttcgcgct gcaggacgat atcgccaact ccatagcgac gaagctgcaa
      961 ctgtcgctgc tggatgcacc cgaccgcgcg gtcgcacgta ccggactgcg caacgtggaa
     1021 gcgtacgagc ttctgctcaa aggacgcgtg ctgctcaggc agcgcgggcc cgcaactctc
     1081 gatgccctcg cttgctttca gcgcgcagtg gcgctcgacc cggagttggt agaagcgcat
     1141 gcattgctgg ccgacgcata ccggctcatc tggatctacg gcatggcgcc agccagcgaa
     1201 acggtacctc aggcccgcgc ggcgatcgcg cgcgccctca acctggactc cgatgatccg
     1261 caggcactgt cgacgctctc caacatcgcc agcacatatg acatggacgt cgagcgatgc
     1321 ctcgcgctcg ccgatcgcgt ttttgcgcgt gagccactgc gcgtggagac gctgtgcgag
     1381 cgtggattcg tcgtggcact gcgcagggat tcgtcgccgg agtcacttgc ggaagctctg
     1441 cactacatac gcatggcgag aggcgctgat ccgctgaatg cctgggcggc tgcgatcgaa
     1501 gcgatgtcgc tcgcatgtat cgagaattac gaagatgcgg tgcgcgaggc gcgacatgcc
     1561 gtcgcgctcg atccgctcgc gttcaccggg cggtgggcac tcgtgtggtg cctcgccgct
     1621 attgggaagg acgatgaagc catcgccgcg gccaccgaag ctctgctcat gtcgggacgc
     1681 catccgcgca tcctcgcgga cgtcgctgca atccacgccc gccgcggaga aaggcgcgcc
     1741 gcattggaga ttctcgagga gctgcgtggc cgcgcggcca tgggattcgt cgagcgctca
     1801 gtgctgggat cagtggcggc gtcctccgga ctcatggtcg aagcgcgcac gctcgtggcg
     1861 cgtgggatcg cggagcatga gacgttctgg cacttcgcga agtcacccgc atgggcaccc
     1921 ttccgggcag actcggaagg agcggcgatg ctgcacactc ttggtttcta gagccatggc
     1981 tcgtgtcgcg caggcaaggc atgaaccggt gccccgcttc gccgcgccat cgagagcggt
     2041 gaccgaatcg cgcgttcgac cttggtgctg tttgaatggc aacacg
//
LOCUS       DATIMD010000438         2454 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3068035, whole genome shotgun sequence.
ACCESSION   DATIMD010000438 DATIMD010000000
VERSION     DATIMD010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3068035"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..852)
                     /gene="hemH"
                     /locus_tag="VLI40_09685"
     CDS             complement(<1..852)
                     /gene="hemH"
                     /locus_tag="VLI40_09685"
                     /inference="COORDINATES: protein motif:HMM:TIGR00109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HSU97490.1"
                     /translation="MPDSAREPAPIGVLLMAYGGPESLTEIPGYLADIRDGRPTTPAV
                     LAEITRNYEAIGGRSPIAELTRRQADGIARLLNPTGGQPRFRVYVGMRHWSPWIEETV
                     GTMSVEGIDRAVSMVLAPHFSGMSIARYQAKIADGLSMYRTSIDFAHVDSYHTAPGLI
                     AALADRVRAGIVRWPEAERESVHVIFSAHSLPERIIRAGDPYDAQVHETAQLVAQSAG
                     IPSDKWSWSYQSAGRSPEPWLGPTYPDHLAALAARGIRNVVSVPVGFVCDHVEILYDI
                     DIEAQRIA"
     gene            complement(845..1969)
                     /gene="hemE"
                     /locus_tag="VLI40_09690"
     CDS             complement(845..1969)
                     /gene="hemE"
                     /locus_tag="VLI40_09690"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: protein motif:HMM:NF013381.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HSU97491.1"
                     /translation="MTAATRPAATHAHGTHAAASEAPAASVAADSILVRACRRQAVPH
                     TPVWLMRQAGRYMPEYRAIRARQTMLEAIGDPATAAEITLQPVSALGVDAAIIFSDIL
                     PPLVGMGLELDFVAGTGPHIANPVRASRDVDMLGTPPAEQTMRGTLSAIRLVRDALPV
                     STALIGFAGAPFTLACYAIEGGSSQRYEIAKSFMYAEPAAWGRLMRRLVTVLADYLIA
                     QARAGADVLQVFDSWAGALGPHDYARYVQPYNVALYRAVKAAGVPVINFSTGTGAYID
                     DVAACGGDVIGIDWRTPLDDVRARLGDKKAIMGNLDPIALLAPWRELKAQIDDVLARA
                     GSTPGHIFNLGHGILPSTPVDSVRRLVDYVHQVTAADSHA"
     gene            complement(1966..>2454)
                     /locus_tag="VLI40_09695"
     CDS             complement(1966..>2454)
                     /locus_tag="VLI40_09695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HSU97492.1"
                     /translation="PSGMIDGAVGAIRTALDNAGHANVAIMAYAVKYSSAFYGPFREA
                     AGGAPSFGDRRTHQLDPANRGIALRESALDVAEGADFLMVKPALAYLDIVNAVSEAHP
                     GVPLVAYNVSGEYAMVKAAAAAGWIDERAIVLESLVSMRRAGAGMIITYHAKDAARWL
                     QE"
BASE COUNT          435 a          797 c          758 g          464 t
ORIGIN      
        1 ggcgatgcgc tgcgcctcga tgtcgatgtc atacagaatc tccacatgat cgcagacgaa
       61 tccaaccggc acgctcacga cgttgcgtat tccgcgagca gcgagcgccg caagatgatc
      121 aggataggtg ggtcccagcc atggctcggg actgcgaccg gcagattgat agctccacga
      181 ccatttatcg gacggtattc ccgcgctctg tgcgaccagc tgtgcggtct cgtgaacctg
      241 tgcatcgtac ggatcccccg cgcgaatgat gcgctcgggg agactgtgcg cgctgaagat
      301 gacgtgtacc gactctcgct cagcctctgg ccagcgaacg atacccgccc gtacgcgatc
      361 ggcgagtgca gctatcagcc cgggcgcggt gtggtagctg tcgacgtgcg cgaagtcgat
      421 cgacgtgcga tacatcgata acccgtcggc gatcttcgcc tgataacgtg cgatgctcat
      481 cccactgaag tgcggcgcga ggaccatgct taccgcgcga tcgatcccct cgacgctcat
      541 cgtccctacg gtctcctcga tccagggtga ccagtgccgc attccgacgt acacccggaa
      601 ccgtggctga ccacctgtcg gattgaggag gcgcgcaata ccatcagcct ggcgtcgcgt
      661 caactccgcg attggcgagc gcccgccgat cgcctcgtaa ttgcgtgtga tctcggcaag
      721 aaccgccggt gttgtgggac gaccgtcgcg tatgtcggcc aggtagccag gaatctcggt
      781 aagcgactcg ggtccgccgt acgccatgag tagcacaccg atcggtgccg gttcacgagc
      841 gctgtcaggc atgcgagtcc gccgccgtga cctggtgcac gtagtcgacc agtctgcgca
      901 cactgtctac gggtgtggac ggtagtatgc cgtgaccaag attgaatatg tgacccggcg
      961 tcgagcctgc acgcgccagc acgtcatcga tctgagcctt cagctcacgc catggcgcga
     1021 gtagcgcgat tggatcgagg ttgcccatta tcgctttttt atcacccagt cgcgcgcgca
     1081 catcatcgag cggcgtgcgc cagtcgatcc cgatcacatc accaccgcaa gcggcgacgt
     1141 cgtcgatgta tgcgccggtt cccgtgctga agttgattac aggaacgccg gcagccttta
     1201 ccgcgcggta gagtgcgacg ttatatggct ggacatagcg cgcgtaatcg tgtgggccga
     1261 gtgctccggc ccatgagtcg aacacctgca gcacgtccgc gcctgctcgt gcctgagcga
     1321 tgagatagtc cgccagcacg gtgacgagcc ggcgcatcaa ccgcccccac gcagcaggct
     1381 ccgcgtacat gaagctcttc gcgatctcgt atcgctgcga gctgccgcct tctatcgcgt
     1441 agcacgccag tgtgaatggc gcgcccgcaa atcctatgag agcggtcgat accggaagtg
     1501 cgtcccgtac gagccgaatg gcgctcagcg taccgcgcat ggtctgctcg gctggcggag
     1561 taccgagcat gtcgacgtcg cgcgatgcgc gaaccggatt ggcaatgtgc ggaccggtac
     1621 ctgcaacgaa gtcgagctcc agccccattc cgacaagcgg tggcagaatg tccgagaaga
     1681 ttatcgcggc atcgacgccg agcgcgctca cgggctggag tgtgatttcg gctgcggttg
     1741 ccggatcacc gatcgcttcc agcatcgtct gtcgcgcgcg gatcgcgcga tattccggca
     1801 tgtaccgtcc tgcctgccgc atgagccaga ccggagtgtg cggcacggcc tgccggcgac
     1861 acgctcgaac gagaatggaa tccgctgcca cgctcgcagc gggtgcttcg ctggccgctg
     1921 catgcgttcc gtgcgcgtgc gtcgcggctg gccgcgttgc cgccgtcact cctgcagcca
     1981 tcgtgcggcg tccttcgcgt gatacgtgat gatcattccg gctcccgcgc ggcgcatcga
     2041 cacgagcgac tcgagtacga tcgcgcgctc gtcgatccat cctgccgcag ccgcggcctt
     2101 taccatcgcg tactctccgc tcacgttgta cgcgacgagt ggaacacccg gatgcgcctc
     2161 acttacggca tttacgatgt cgagatacgc gagcgctggc ttcaccatga gaaagtccgc
     2221 gccctccgct acgtcgagcg cactctcgcg cagcgcgata ccacgattcg ctgggtccag
     2281 ctgatgtgtg cgccggtcgc caaagctcgg tgcgccaccg gctgcctcgc ggaacgggcc
     2341 gtaaaacgct gacgaatatt ttacggcgta tgccattatc gcgacgttgg catggcccgc
     2401 gttgtcgagc gccgtgcgaa tggcgccgac agcgccatcg atcattccgc tcgg
//
LOCUS       DATIMD010000439         3411 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1337988, whole genome shotgun sequence.
ACCESSION   DATIMD010000439 DATIMD010000000
VERSION     DATIMD010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1337988"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VLI40_09700"
     CDS             <1..190
                     /locus_tag="VLI40_09700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97493.1"
                     /translation="VTRLGARLRSAKPIDAGAEADGMEVATLPLVPFGVFLAPAAVVS
                     LFYGNALIQWYLTRFIGQ"
     gene            187..1434
                     /locus_tag="VLI40_09705"
     CDS             187..1434
                     /locus_tag="VLI40_09705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97494.1"
                     /translation="MIQRSSDNRARAVKTGLVVLLLIASASCRRRPESAGGPYGDIVA
                     QAVPAVEKAVGLKFKTPPRIEVRTKEQVRDYVLKQLADTATIREIAGQSAAYKLLGMI
                     PDTLDLPKLMTSLLEEQIVGFYDPETKVLYIVKGSPKESAQLIVTHELVHALQDQYVN
                     LDSIQKATGDNDRQSAQQAVFEGEAVYEQIHAMLGPGNIAVAMPGGWDRVRQTIRNNQ
                     AAMPIYSSAPMVIQETLIFPYLSGAEFVKNFRAREPGRVPFRDLPVSTAQVLHQNEFF
                     DKRVAPTPVSFAPVSSVRPTYENDLGEFETRLYLYQHLNDVDVAARGASGWNGDRYIT
                     WNTASGPAIAWATVWLTPERAADFYELMQQVATAREPAKHGRSEKVTTGEVAGRQVVL
                     LVDTPAGIAPPISLSDVRLGKRP"
     gene            complement(1505..2107)
                     /locus_tag="VLI40_09710"
     CDS             complement(1505..2107)
                     /locus_tag="VLI40_09710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97495.1"
                     /translation="MSDVLVQFDEPQLSADGRMFTAEVRGNRLPTGLWEAWIEFQPRI
                     GGEAVRTHRETEQLSRGDLRFWAAGITRDQLRDALARALAPERTPHLDAAPQVTDADE
                     GAEDDTVLAMTQARNNDPVLDPFSVYRRSGEYTLRQELSALNAQQLAGIIAHYQVAEI
                     DVIDLARTYEDALAERIVAGVQHNVDTNRTLASRREIRAE"
     gene            2347..>3411
                     /locus_tag="VLI40_09715"
     CDS             2347..>3411
                     /locus_tag="VLI40_09715"
                     /inference="COORDINATES: protein motif:HMM:NF016196.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HSU97496.1"
                     /translation="MHEPPTVLNSEPRVTLAAPPIADEALKRERLLRMKRFALLLLIC
                     SGVIFVIALLMERHYGWVWLGYVRAGAEASVVGGVADWFAVTALFRHPLGIPIPHTAI
                     VPARKDRIGRALGNFVQQNFLDRDVVARKLAALRLGDRTAQWLSEPANARTVTRATAH
                     ALTSAANVLRDEDVQSFLERTAGDRLRSVQVAPLIGRALRLLTADGRHQELLDEALRL
                     AARATEANDTLIREKVQEQTPWWIPGVVDRRISDRVVSGIGRTLAEVSADPDHPLRHK
                     FDDAVRNFIDRLQSSPETIARAEALKEELLADATTREFIATIWSDIKRKLGEYALRTE
                     DAEFTGGKLEGAIASLAHNVL"
BASE COUNT          651 a         1068 c         1054 g          638 t
ORIGIN      
        1 agtcacacgg ctcggtgcgc ggctacgtag cgcgaaaccg atagacgctg gcgccgaagc
       61 cgacggcatg gaagtcgcga cgcttccact cgttccgttc ggtgtattcc tcgcacctgc
      121 ggccgtcgtc tcacttttct atggtaatgc gctgatccag tggtatctca cccgtttcat
      181 cggtcaatga ttcagcgctc atcggacaac cgtgcgcgcg cggtgaagac cggcctggtc
      241 gttctgctcc tcatcgcgag cgcgtcatgt cgccgtcgtc ccgaaagcgc gggcggacca
      301 tacggcgaca tcgtcgcgca ggcggtgcca gctgtcgaga aggcagtcgg cctcaagttc
      361 aagacgccac cccggatcga ggtccgcacc aaggagcagg tgcgcgacta cgtgctcaaa
      421 cagctcgcgg atactgcaac catacgcgag atcgcgggcc agtccgccgc gtacaagctg
      481 ctcggcatga ttcccgacac gctcgatctt ccgaaactga tgacaagtct gctcgaggag
      541 cagatcgttg ggttctatga tccggagacg aaggtccttt acatcgtcaa gggatcaccc
      601 aaagagtcgg cgcagctgat cgtgacgcac gagctggttc acgcactcca ggatcagtac
      661 gtgaacctcg actcgatcca gaaggccacc ggcgataacg atcgccagtc cgctcagcag
      721 gccgtattcg agggcgaggc ggtttacgag cagatacacg cgatgctcgg ccccggcaac
      781 atcgccgtag cgatgccggg cggctgggac cgcgtgcgcc agacaatccg caacaaccag
      841 gcggcgatgc cgatctactc cagcgcgccg atggtaattc aggagacact catattcccg
      901 tacctgagcg gggccgagtt cgtgaagaat ttccgcgcgc gcgagccggg ccgggtgccg
      961 ttcagggatc tgccggtatc gaccgcccag gtcctgcatc agaatgaatt ctttgacaag
     1021 cgcgtggcgc cgactccggt ctccttcgca cccgtttcaa gcgtccggcc gacctacgaa
     1081 aacgatctcg gcgagttcga gacgcggctg tatctctacc agcatctcaa tgatgtcgat
     1141 gtcgcagcgc gtggtgcatc ggggtggaat ggcgatcgct acatcacctg gaataccgcg
     1201 agcgggccgg cgatcgcatg ggctacagtc tggttgacgc cggagcgcgc cgcggacttc
     1261 tatgaactga tgcagcaggt cgcgacagcg agggagccgg cgaagcacgg acggtcggag
     1321 aaagtcacga cgggcgaagt cgcgggccgg caggtagtcc tgttggtcga tacacccgcc
     1381 ggaatcgccc cgccgatcag cctgagcgac gtgcgtttgg ggaagcgtcc gtagccagtc
     1441 acccgcaaat gttgaaaacc aagcgtttgt aacggcgctc gcgcgcgccc cgagtgcggc
     1501 tcaactactc agcgcgaatc tctcgtctgg acgcaagtgt ccgattcgtg tccacattgt
     1561 gttgcacgcc tgcaacaatt ctttccgcca acgcatcttc atacgttcgc gccagatcga
     1621 tcacgtctat ctccgcaacc tgatagtgcg cgatgatgcc ggcgagctgt tgagcattca
     1681 gcgcgctcag ctcctgacga agtgtatact cgccggaacg tctgtaaacg gaaaacggat
     1741 ccaggaccgg gtcgttgttt ctggcctggg tcatcgcaag aaccgtgtca tcttcggcac
     1801 cttcatcggc gtctgtaact tgcggtgctg catcgagatg cggcgttcgc tcgggtgcca
     1861 gcgcgcgcgc cagcgcgtct ctcaattggt ctctcgtaat gccggcggcc cagaatcgga
     1921 gatcgccgcg cgacaattgc tcggtctccc gatgcgttcg cacggcctcg ccgccgattc
     1981 gcggttgaaa ctcgatccag gcttcccaca agcctgtagg aagtctgttg ccgcgaactt
     2041 ccgcggtgaa catcctgcca tctgcgctca gctgaggctc gtcgaattga accagtacgt
     2101 cagacatcgc atccagggcg gcgacgagtc gcggatacag ttattgtccc gcgagcatca
     2161 tcgatttgcg gccgcgtagt gcaagcaatc ggccacgcga agcggcgcga tttcgttcat
     2221 ccaagtgaca gcttcatgcg catacgcgga gcattccaaa catccggttg tcgggtgccg
     2281 gatcccgtat ccaacaattg tgatgcccga atccatgggc tgccacgtta acattcagcg
     2341 gtgacgatgc acgagccacc cacggtactg aacagtgagc cccgcgttac gctcgcggcg
     2401 cctccgatcg ccgacgaggc gctcaagcgc gagcgtctgc tccggatgaa gcggttcgcg
     2461 ttgctgctgc tcatctgttc cggcgtcatt ttcgtgatcg cgctcctcat ggagcgacac
     2521 tacggatggg tctggcttgg ctacgtacga gcgggggccg aggcgtccgt ggtgggcggc
     2581 gtggcagact ggttcgccgt gacagccctg ttccggcatc cgctcggcat tcccatcccg
     2641 cacacggcga tcgttcccgc acgcaaggac cgcatcgggc gggcgcttgg aaatttcgtc
     2701 cagcagaatt ttctggaccg ggacgtcgtc gcgcgcaaac tggccgccct gcggctgggc
     2761 gaccgcacgg cccagtggct ctccgagccc gcgaacgctc gaacggtaac acgcgccacc
     2821 gcacacgcac tgacatcggc cgccaacgtc ctgcgcgacg aggacgtgca gtcgttcctc
     2881 gagcgcaccg ccggcgaccg tctgcgcagt gtgcaggtcg ctccgttgat cggtcgcgcg
     2941 ttacggttgc tcactgccga tggcaggcat caggagctgc tcgatgaggc gcttcgtctc
     3001 gccgcgcgcg cgaccgaagc aaacgatacg ctcattcgcg agaaggttca ggaacagacg
     3061 ccctggtgga taccgggcgt tgtggaccga cgcatttcag acagggtcgt gagcggaatc
     3121 ggccggacgt tggcggaggt gagcgcggat ccggatcatc cactgcgcca caagttcgac
     3181 gatgccgtgc gcaacttcat cgatcgcctg caatcgtcac cagaaaccat cgcacgtgcg
     3241 gaagcgttga aggaagagct tctggcggac gcaacgacgc gtgagttcat tgccacgatc
     3301 tggtccgaca tcaagcgcaa gctcggcgag tatgcactgc gtacggaaga cgcggagttc
     3361 accggcggca agctggaggg agcgatcgcg tcgctcgcgc acaatgtgct g
//
LOCUS       DATIMD010000440         4184 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3928805, whole genome shotgun sequence.
ACCESSION   DATIMD010000440 DATIMD010000000
VERSION     DATIMD010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4184
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3928805"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VLI40_09720"
     CDS             complement(<1..293)
                     /locus_tag="VLI40_09720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97497.1"
                     /translation="MPLYNTATAATAIGVTDKWLDNLLSHNHIPGVQSESQGVPRRLS
                     LAAVTQIALIKDLVDLLNVPVSTAVRVAAAMLTDPDGRSFGDSPIRITMDLDE"
     gene            349..894
                     /locus_tag="VLI40_09725"
     CDS             349..894
                     /locus_tag="VLI40_09725"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSU97498.1"
                     /translation="MKCFVMAVAALIGTGLSVPAGAQSSIHLGVAGGAAIPVGKLDGT
                     YSAGANGLATLSMGPAESPLGLRIDYQYAGFNGKTVAGARVPDLHINSLTANLVMAFR
                     VGYAKPYLIGGAGWYPLRLPGATKRENDFGVNGGAGVAFPLPYTGIGAFIEARYHDVN
                     RSETTPYTSIHYIPVTFGLMF"
     gene            1063..1629
                     /locus_tag="VLI40_09730"
     CDS             1063..1629
                     /locus_tag="VLI40_09730"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSU97499.1"
                     /translation="MVSLTKFAAVAAIVISSATVAGAQSVTSATKPFSLGLSGGASIP
                     TGDLSNSVNTGYNIGGHVGLGSPAIPIGFRGDVNYDNFGAKGSGNSNAHVWSYTANAV
                     YDIPTMTGIRPYVIGGIGGFKPGVSTSSGGSTYSASSGTKFGFDVGGGLTIPLSGFNA
                     FVEARYNRFNNDGGGSTSFVPITFGVMF"
     gene            complement(1686..2102)
                     /locus_tag="VLI40_09735"
     CDS             complement(1686..2102)
                     /locus_tag="VLI40_09735"
                     /inference="COORDINATES: protein motif:HMM:NF014677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF190 domain-containing protein"
                     /protein_id="HSU97500.1"
                     /translation="MTMRGLKGERVLMRIHIGERDRYEGKPLYEAIVNLLRSRGYAGA
                     TVFRGVMGYGASGRLAADHMELLAFDLPLVIECVDTQEKIEAILPDIDVMIDAGLITL
                     ERAKVILYRGRRNDSAPHTLPEEDRIDITGDWRQQK"
     gene            complement(2105..2497)
                     /gene="crcB"
                     /locus_tag="VLI40_09740"
     CDS             complement(2105..2497)
                     /gene="crcB"
                     /locus_tag="VLI40_09740"
                     /inference="COORDINATES: protein motif:HMM:TIGR00494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1903425 - fluoride transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:1903424 - fluoride transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HSU97501.1"
                     /translation="MTIWYVAAGSALGGASRYVIGTALQQRFGLAFPVGTLIVNITGS
                     LLLGFLLRFALGSNQLSPETRIFLTTGFCGGYTTFSTFTYDTAVMFESGQYRRAALYV
                     TLSVVLSLVATFAGFALAQSALTFRSRA"
     gene            complement(2517..4046)
                     /locus_tag="VLI40_09745"
     CDS             complement(2517..4046)
                     /locus_tag="VLI40_09745"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSU97502.1"
                     /translation="MSGSSDETPTGPDLSAGIPASSIADGAMLLGHVGNDPVLVARTD
                     GSLYAIGATCTHYGGPLAEGIIVGDTVRCPWHHACFSLRTGEPLRAPALDRVTCYRVD
                     ESAGNVFVREAIEPPSTYRRALSSPPTSIVIIGAGAAGVAAAEMLRRCGYTDSIKLFD
                     QLHTPPVDRPNLSKDYLAGTAEEEWVNLRPEDFYTSHNIELIRGRRVNRIDTRAHTVA
                     TDDGTTTKFSALLLATGSSPVRLPVPGADLPTVHYLRTLDDSKAIIAATQTGKRAVVI
                     GASFIGLEVAASLRARNVAVTVVAPESLPLGRILGDELGKMVKAMHEGKGVTFMLGAS
                     VKSITADAVQLADGTSLPADFVVIGVGVRPEVAIAQDAGIKVDNGVVVSTTLETSVPG
                     IFAAGDIASWPDPRAGRIRVEHWVVAERQGQIAARNMLGANEPFTLTPFFWSRHYDLQ
                     INYVGRSSPDDSREVDGDPMKHDCTVTYMPSGGAVSAQADVGRDRSSLLAEARLDGEI
                     K"
BASE COUNT          836 a         1187 c         1304 g          857 t
ORIGIN      
        1 aactcgtcca ggtccatggt tatgcgtatt ggtgagtcgc caaagctcct gccgtccggg
       61 tcggtcagca tggctgcggc gacgcgcacg gcggtggaca cgggcacatt gaggagatcg
      121 acgaggtcct tgatcagcgc aatctgagtg actgccgcga gcgagaggcg gcgcggtacg
      181 ccttgtgatt cgctctggac gccgggtatg tgattgtggg acagcaggtt atcgagccat
      241 ttatcggtga ctccaatggc agttgcggcg gtcgcggtat tatacagggg cataatatcc
      301 tagagtagga ggatatttaa aattaaccta atttattagg ataaatacat gaagtgcttt
      361 gtcatggctg tagcagcgct gatcggaaca ggtctgagcg taccagcagg agcacagagc
      421 tcgatccacc taggcgttgc cggaggtgct gcgattcccg tgggaaagct tgacggcacg
      481 tattcggcgg gggcaaatgg actcgccact ctttcgatgg gaccggcgga atctccgctc
      541 gggcttcgga tcgactacca gtacgccggc ttcaacggca agacagtcgc tggcgcgcgt
      601 gttccggacc tccacataaa ctccctgact gcgaatctcg tgatggcatt ccgggtcggc
      661 tatgccaagc cctatctcat aggcggcgca ggctggtatc cgcttcggct gccaggtgca
      721 accaagcgtg aaaatgactt cggtgtgaac ggtggtgccg gcgttgcctt tccgctgccg
      781 tacactggca ttggtgcgtt catagaggcg cgttaccacg atgtgaatcg ttcggagacg
      841 acgccttaca cgtcaattca ctacatccct gtcacgtttg gattgatgtt ctaaacatat
      901 gttgcacaaa aaaagacgac cgtgcaaata aacgcatgtt ctcgctgttc ccgcggaacc
      961 ctttggatcg tcctgtgcta gaagtaaggt gaaggtgttg gtgcgcgccg cggattttca
     1021 gaatccgagg cgcgtttgat tagaacctct caaggagtca ttatggtaag tcttacaaag
     1081 tttgcggcag ttgcagcgat tgtaatctca agtgcaactg ttgcgggcgc acagagtgta
     1141 acgagcgcga caaaaccgtt ctcgctcggt ctctccggcg gcgcttcgat cccgacaggt
     1201 gatttgtcaa acagtgtaaa cactggctac aacatcggcg gtcatgtcgg actcggctcg
     1261 ccggcgatac cgatcggttt tcgtggtgat gtgaactacg acaacttcgg tgcaaaggga
     1321 tccggcaatt ccaacgcgca cgtctggtca tacacggcca acgcagtgta cgacattccg
     1381 acgatgaccg gaattcggcc gtacgtgatc ggcggtattg gcggtttcaa gcccggcgtc
     1441 agcacgtcgt ccggtggtag cacgtattcc gcgagcagcg gcacgaagtt cggtttcgac
     1501 gttggcggtg gtctgacgat tccgttgtcg ggcttcaacg cattcgtgga ggcgcgctac
     1561 aatcgcttca acaatgacgg cggcggcagc acaagcttcg tcccgatcac gttcggcgtg
     1621 atgttctagt actgcaacac tgcacgatga aaacagcccc tggccgcaat ggtcgggggc
     1681 tgttttcatt tctgttgtcg ccagtcgccg gtgatgtcga tcctgtcttc ttccggaagt
     1741 gtgtgcggcg cggagtcgtt gcgcctgccg cgatagagaa tcaccttggc gcgctcgagt
     1801 gtgatgagtc ctgcgtcgat catcacgtcg atgtccggca ggatggcttc gatcttttcc
     1861 tgtgtgtcga cacactcgat cacgagcgga agatcgaagg cgagcagctc catgtgatcg
     1921 gccgccagcc ggccgcttgc gccgtaaccc atgacgccgc ggaaaaccgt ggcgccggca
     1981 tagccgcgag agcggagcag attgacgatc gcctcgtaca acggctttcc ttcgtatctg
     2041 tctcgctcgc caatgtgaat gcgcatgagt acgcgctcgc ccttgaggcc acgcatcgtc
     2101 atcgtcaggc tcggctgcga aaggtcagag cagattgtgc aagtgcaaag ccggcgaatg
     2161 tcgccaccag cgacagcacg acgctgagtg tgacatacaa cgcggcgcgg cgatactggc
     2221 cgctctcgaa catcaccgcg gtgtcgtagg tgaacgtaga gaaggtggtg tagccgccgc
     2281 agaatcccgt cgtgagaaaa atgcgcgttt ccggcgatag ctggttactg ccaagcgcga
     2341 aacgcagaag aaagccgagc agcaggctgc ccgtgatgtt tacgatgagg gtgccaaccg
     2401 gaaacgcgag cccgaagcgt tgctgcagtg cggttccaat cacataccgg ctcgcgccac
     2461 caagggcgct gccggcagcg acgtaccaga ttgtcaacag ggcttcaggg atcacgctac
     2521 ttgatttcgc cgtcgaggcg ggcttcggcc agaagactgg accggtcgcg gccgacatca
     2581 gcctgcgcgc tgacagcacc acccgatggc atgtacgtca cggtgcagtc gtgcttcatc
     2641 ggatcgccgt cgacctcgcg gctgtcgtcg ggggacgacc ggccgacgta gttgatctgc
     2701 aggtcgtagt ggcgactcca gaaaaacggc gtgagtgtga acggctcgtt cgcgccgagc
     2761 atgttgcgcg ccgcgatctg gccctggcgc tccgcgacga cccagtgctc gacgcgaatc
     2821 cggccggcac gcgggtcggg ccacgacgcg atatcaccgg cggcaaaaat tccaggcacg
     2881 gacgtctcga gcgtcgtact caccacgacg ccgttgtcga ccttgatgcc ggcgtcctgc
     2941 gcgattgcaa cttcggggcg cactcccact ccgatgacaa cgaagtctgc cgggagtgaa
     3001 gtgccatcag cgagttgaac cgcatcggcc gttatggact tgacgctcgc gccgagcatg
     3061 aacgtcacgc ccttgccttc gtgcatggcc ttcaccattt tgccgagctc gtcgcccagt
     3121 atgcgtccga gcggtaacga ctcaggcgca actacagtga cggcaacatt gcgtgcgcga
     3181 agcgatgcgg ccacttccag accgatgaag ctggcgccga tcacaaccgc acgcttaccg
     3241 gtttgcgtcg ctgctatgat tgccttgctg tcgtcgaggg tgcgcaggta gtgcacggtc
     3301 ggcaggtcgg cacccggcac ggggagacgt acgggtgaac tgcccgtcgc cagaagcaat
     3361 gcactgaatt tcgtggtcgt gccatcgtcc gtggcgacgg tgtgcgccct ggtatcgatg
     3421 cgattgacgc ggcggccgcg aatcagctcg atgttgtgcg atgtgtaaaa atcctcggga
     3481 cgaagattga cccattcctc ttccgcggtt ccggcgagat aatccttgga gagattgggg
     3541 cgatctaccg gtggtgtatg cagctggtcg aatagcttga tcgaatccgt gtaaccacat
     3601 ctccgcaaca tttccgcagc cgcgacaccg gcggcaccgg cgccgatgat gacgatggac
     3661 gttggagggc tggaaagcgc gcggcggtac gtcgagggtg gctcgatggc ttcgcgaacg
     3721 aacacattgc ccgcactttc gtcgacgcgg tagcatgtga cacgatccag tgccggagcc
     3781 cgcaacggct cgccggtcct gaggctgaag cacgcatgat gccagggaca acgaacggta
     3841 tctccgacga tgattccttc ggctagtggt ccgccgtagt gcgtgcaggt tgcaccaatt
     3901 gcgtacagcg atccgtcggt acgggctacg agaacgggat cgttgcccac atggccaagc
     3961 agcatggcgc cgtccgcgat cgatgacgct ggaattcccg cggagagatc gggtcctgtg
     4021 ggtgtctcgt cagacgaacc ggacatggta ccacctcgtg ttcagggaat gagctgcaac
     4081 ctgcggacaa ccgcgccaag cgccgcgtgt gcagcggtaa tctgatcatc tactgcatcg
     4141 ggtcccgttc cgccagggac gtttcggcga gcaaccgatg catc
//
LOCUS       DATIMD010000441         2307 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4220966, whole genome shotgun sequence.
ACCESSION   DATIMD010000441 DATIMD010000000
VERSION     DATIMD010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2307
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4220966"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1464)
                     /locus_tag="VLI40_09750"
     CDS             complement(<1..1464)
                     /locus_tag="VLI40_09750"
                     /inference="COORDINATES: protein motif:HMM:NF028457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5117 domain-containing protein"
                     /protein_id="HSU97503.1"
                     /translation="MYRSINLIAALGACLAFSACRPATPPAPAPSPARAPTHGAVDSG
                     SHSGVRQYAVVVPGSAETHRGLFITHRVGDRLLFEIPRSAFNEDMLQLGRLVRAAPER
                     DPSQQDDFGGDQFSERAIRWERAGNRVLLRSPSYSITADSTLAIHRAIVAATYPPILA
                     TFDVLAYGPDSSAVIDVTRLFTTSVPEFSALRGSIDPQRSFIESTVAFPDNVEIEATQ
                     TVGPTQSQLASASRVSVLTRSVLAHWSIIRLPAHPMQPRWADDRIGIYSLGPIDFGAD
                     ADHAVHRRYIARWRLEKKFPDSAVSVPVHPIIYYIDPATPDKWKPWIKKAVEDWQPAF
                     EAAGFRHAIIARDPPTNDPSWSAEDIRHTVIRWMPSTTENAYSDGTRDIRTGELLNGS
                     IRVFNNITNMLRDWYLTQVAPLDPRVQQPQFPDSLMGRLLEYIVSHEVGHTIGLYHNH
                     KASSLYPADSVRSASWVRRMGFTPSVMDYARFDYVAQP"
     gene            complement(1518..>2307)
                     /locus_tag="VLI40_09755"
     CDS             complement(1518..>2307)
                     /locus_tag="VLI40_09755"
                     /inference="COORDINATES: protein motif:HMM:NF015863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HSU97504.1"
                     /translation="IVDTHRGGERFFEVTEAIHRRLLAGEIGRRIVGIATVCFVLLLL
                     SGVVIWWPRALRALKAHLTFKRPAGWKRRNYDLHVVLGIYATLILLVVGATGLVWSFR
                     TVGKAVDGLTPSGKATPPPPHSTPVATLAAIGMQSALDIGGAALGPVTTLVAYPATRP
                     RDAITVMGLPPHAPWRQAMDIAYIDQYSGRTLRIDRFANRPLGEFARRVTNPIHVGSL
                     YGLPSEIAAFIACLIGTIAPFTGAVIWINRKWPRALRWPARRAA"
BASE COUNT          433 a          690 c          782 g          402 t
ORIGIN      
        1 cggttgcgcc acgtagtcga agcgcgcgta gtccatcaca gatggcgtga atcccatgcg
       61 gcgaacccag ctcgcggagc ggacagaatc cgcgggatac agcgagctcg ccttgtggtt
      121 gtgatacaga ccgatcgtgt gaccgacctc gtgcgacact atgtactcca gtagtcgtcc
      181 catcagcgaa tcggggaact gcggctgttg tacgcgcgga tcaagcggcg cgacctgcgt
      241 cagataccag tcgcgcagca tgttggtgat gttgttgaac acgcgtatcg agccgttcag
      301 caattcaccg gtgcgaatgt cacgcgttcc atcgctgtac gcattctccg tcgtcgacgg
      361 catccagcgg atcactgtat gccggatgtc ctcggcggac cagcttggat cgttcgtcgg
      421 aggatcacgg gcaatgattg cgtggcggaa gcccgcggcc tcgaaggccg gctgccaatc
      481 ttccactgct ttcttgatcc acggcttcca cttgtccggt gttgcgggat cgatgtagta
      541 gatgatcggg tgcacgggca ccgacaccgc ggagtcgggg aacttcttct cgagtcgcca
      601 gcgcgcgatg tagcggcgat gcaccgcgtg atccgcgtcg gcgccgaagt cgatggggcc
      661 gagggagtag atccctatgc gatcgtcagc ccagcgcggc tgcatcggat gcgctggcag
      721 acggatgatg ctccagtgcg cgagaacgct gcgcgtgagc accgatacac gactggcgga
      781 cgcgagctga ctctgcgtcg gacccacggt ctgcgtcgct tcgatctcga cattgtcagg
      841 gaacgcgacc gtactctcga tgaacgagcg ttgcgggtcg atcgagccgc gaagcgcgga
      901 gaattcgggc acggaggtcg tgaacagtcg agtcacgtcg atcaccgcgg agctgtccgg
      961 tccgtaggcg agtacgtcga acgtggcgag aatcggtggg tacgtggcgg cgacgatggc
     1021 gcgatggatc gcgagcgtac tgtcggctgt aatcgagtac gatggcgagc ggagcagcac
     1081 cctgttgccg gcgcgctccc agcgaatcgc gcgttcgctg aactgatcgc cgccgaaatc
     1141 gtcctgctgc gacggatctc gctccggagc ggctcgcacg agccgcccga gctgaagcat
     1201 gtcctcgttg aacgcgctcc gcgggatctc gaacaggagc cggtcgccaa ctcgatgcgt
     1261 gatgaacaga ccgcggtggg tctcggcgga accaggcacc acgactgcat attgccgaac
     1321 gcccgagtgc gaaccgctgt cgaccgctcc gtgcgtgggg gcgcgtgcgg gtgacggagc
     1381 cggcgccggc ggcgttgcgg gacgacacgc gctgaatgcg aggcatgcgc cgagcgcggc
     1441 gatcaggttg atggatcgat acatatgtgc ttcgagatga cgatggaaaa cggaatgttc
     1501 agtgatggag tgcgatatca tgcggcgcgt cgtgccggcc aacgcaacgc gcgcggccat
     1561 ttgcggttga tccagatcac cgcgcccgtg aacggcgcga tcgttccgat gaggcatgcg
     1621 atgaacgcgg cgatctcgct tggcagaccg tacagcgaac cgacgtgaat gggattcgtc
     1681 acccgtcgtg cgaactctcc gagtggacgg ttcgcgaagc gatcgatgcg gagcgtgcgc
     1741 ccggagtact gatcgatgta cgcgatgtcc atcgcctggc gccatggtgc gtgcggcggg
     1801 agtcccatca cggtgatcgc atcgcgcgga cgcgttgccg gatatgcgac gagcgtcgtg
     1861 acgggaccga gggccgcgcc gccaatgtcg agcgcggact gcatgccgat cgccgccaga
     1921 gtcgcgaccg gcgtggagtg cggcggtggc ggcgtggcct tgccggacgg ggtgagacca
     1981 tcgaccgcct ttccgacggt acggaacgac cacacgagtc ctgtcgcacc aaccacgagc
     2041 agaatcaatg tcgcgtagat gccgagcacg acgtgcaggt cataattacg ccgtttccat
     2101 ccagcagggc gcttgaacgt gaggtgcgcc ttgagcgcac gcagcgcgcg cggccaccag
     2161 attaccacac cactgagcag aagcagaacg aagcagaccg tcgcgattcc cacgatgcgg
     2221 cgtccgatct caccagcgag gagacgccga tggatcgcct cggtgacttc gaaaaacctc
     2281 tcgccgcctc ggtgcgtatc cacgata
//
LOCUS       DATIMD010000442         5911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2198947, whole genome shotgun sequence.
ACCESSION   DATIMD010000442 DATIMD010000000
VERSION     DATIMD010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5911
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2198947"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1089)
                     /gene="carB"
                     /locus_tag="VLI40_09760"
     CDS             complement(<1..1089)
                     /gene="carB"
                     /locus_tag="VLI40_09760"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HSU97505.1"
                     /translation="MPKRTDIHRILVIGSGPIVIGQGAEFDYSGTQATKALKEEGYEV
                     ILINSNPATIMTDPEFADATYVEPVTPKFVELVIEKERPDALLPTMGGQTALNVAMSL
                     SQNGVLEKYGVELIGADERAIRTAEDRALFNEAMKRIGLQVARGGTATTYEEALVLVE
                     DTGFPSIIRPAFTLGGSGGGIAYNRDEFEEIVKRGLDLSPMSQVLVERSLIGWKEFEL
                     EVMRDAADNVVIVCSIENIDPMGVHTGDSITVAPAMTLTDREYQLMRDASVAVIREIG
                     VAAGGCNIQFAVNPVDGEMIVIEMNPRVSRSSALASKATGFPIARIGAKLAVGFRLDE
                     VPNDITKTTPASFEPVLDYVVVKCPRFAF"
     gene            complement(1168..1416)
                     /gene="rpmB"
                     /locus_tag="VLI40_09765"
     CDS             complement(1168..1416)
                     /gene="rpmB"
                     /locus_tag="VLI40_09765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HSU97506.1"
                     /translation="MKSQLAEKRTKAIERNKCYACGKGVTFGNNVSHANNKTRRTWKP
                     NLQVARVAVADKIVKVKVCTSCLAAGKVVRAPRSQAVA"
     gene            complement(1419..1781)
                     /gene="rplQ"
                     /locus_tag="VLI40_09770"
     CDS             complement(1419..1781)
                     /gene="rplQ"
                     /locus_tag="VLI40_09770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017042856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HSU97507.1"
                     /translation="MRHRKVGRQLRRTPEQRLALLRNLAQSLIQHGAIETTEAKAKEL
                     RPFVEKLITKAKEGTLHSRRLAARHVQQRAVNDKLFKEVAPKFATRQGGYTRILKTGH
                     RKGDGAEMARIELMPETK"
     gene            complement(1928..3004)
                     /locus_tag="VLI40_09775"
     CDS             complement(1928..3004)
                     /locus_tag="VLI40_09775"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF003513.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HSU97508.1"
                     /translation="MANAIDLRGLVRPQLVESTKREDTPNVAEFRLQPLERGFGYTLG
                     NAMRRMLLSSLRGSAVWGFRIDGVVHEHQTIPGVVEDVHQIIANLKTLVLSLDDATET
                     TVVRVTKTGPAAIKASDITGAAGLTVLEPDHHLFTLQDDRDITFELYVNHGRGYVEAD
                     QHVADRNLPVDLVRIDSIYNPVRRCNFSVDATRVGQRTDYDRLTLLVETNGTISPEEA
                     VSYAAALAQTHFQYFAGFGSHTSAPITAASEMGGNDAARLAQLLSTPIEDLELSVRSV
                     NSLKNSEIRTLGDLVKRTEDQILDVKNFGKKSLNEIAELLERENLNFGMKFEQSEEGV
                     RITDRGTPPNRAALAEAAIGDDED"
     gene            complement(3122..3754)
                     /gene="rpsD"
                     /locus_tag="VLI40_09780"
     CDS             complement(3122..3754)
                     /gene="rpsD"
                     /locus_tag="VLI40_09780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002614801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HSU97509.1"
                     /translation="MRYTGPSCRQCRREGTKLFLKGTKCFTEKCPVERRPTPPGQHGA
                     SVARRRKVSEYSKQLREKQKIKRIYGVSEKQFRNTFERVTTLPGVTGHNLLAALESRL
                     DNIIYRMGFAQSRKAARQLVRHRHVEVNGKSVDVPSFLVQPGQEVRVRAKSREQASII
                     VSMDQASRGAPLSWIAVDKESFSGRMLERPTRPNIPIAAQEQLVVELYSK"
     gene            complement(3758..4135)
                     /gene="rpsK"
                     /locus_tag="VLI40_09785"
     CDS             complement(3758..4135)
                     /gene="rpsK"
                     /locus_tag="VLI40_09785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004074888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HSU97510.1"
                     /translation="MATAKKVKKIVEAEGLAHVSATFNNTTITITDNRGNTISWSSSG
                     KAGFKGSKKSTPFAATVAGEQAGREAFSAGVRRVNVRVQGPGSGRESAIQALATAGLQ
                     VKSIRDVTPIPHNGCRPPKRRRV"
     gene            complement(4139..4516)
                     /gene="rpsM"
                     /locus_tag="VLI40_09790"
     CDS             complement(4139..4516)
                     /gene="rpsM"
                     /locus_tag="VLI40_09790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HSU97511.1"
                     /translation="MARIAGVDLPRDKKLEIGLTYIFGIGRKTAQSILQSTGVSPSQR
                     VRDLNDADTNKLRQAIERDLKVEGALRTEVAMNIKRLMDIGSYRGTRHRRGLPVRGQR
                     THTNARTKKGPRRAIAGKKKVTK"
     gene            complement(4520..4636)
                     /gene="rpmJ"
                     /locus_tag="VLI40_09795"
     CDS             complement(4520..4636)
                     /gene="rpmJ"
                     /locus_tag="VLI40_09795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020322760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HSU97512.1"
                     /translation="MKVRSSVKPICEHCKVIKRQGVIRIICSRNPKHKQRQG"
     gene            complement(4679..5401)
                     /gene="pyrF"
                     /locus_tag="VLI40_09800"
     CDS             complement(4679..5401)
                     /gene="pyrF"
                     /locus_tag="VLI40_09800"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF001273.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HSU97513.1"
                     /translation="MTQSSRVTPHATPIVALDFWMADAALQMVDLLGDRCDFYKVGGE
                     LFTVAGPTIVRQLVARGKRVFLDLKFHDIPNTVEKATAAAAELGASIVTVHASGGLRM
                     IRAAVDIAGPGCEVFAVTVLTSLSGTDLDAVWGGARRGGGSDLTPDVLRLARLAKDAG
                     VAGVVCSGLEAPVLRDRFGADLKLLVPGVRLPGSDRGDQTRVVTPAEAAQAGASYVVL
                     GRTVTSADDPGAAMDQAVASLA"
     gene            complement(5412..>5911)
                     /locus_tag="VLI40_09805"
     CDS             complement(5412..>5911)
                     /locus_tag="VLI40_09805"
                     /inference="COORDINATES: protein motif:HMM:NF013355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97514.1"
                     /translation="CADSASLAAVVSGARSATRKPIFVKLSPVLPNIGDAALTAAAAG
                     ADGITVVNTLPGLVVDVDARRPRIGFGSGGASGPGLLPVGVLATYRVRRAVSLPIIGV
                     GGVTSASDALQYMIAGASLVAIGTASLRDPRTAERIVRDLSRWCDEHGVAAIQDVVGT
                     LQWPA"
BASE COUNT         1008 a         1882 c         1862 g         1159 t
ORIGIN      
        1 gaatgcgaag cgcggacact tcacgaccac gtagtcgagc accggctcga acgacgccgg
       61 cgtcgtcttc gtgatgtcgt taggcacctc gtcgagccgg aatccgaccg cgagcttcgc
      121 gccgatgcgc gcgatcggga atccggtcgc cttggacgcg agcgccgacg agcgcgacac
      181 acgcggattc atctcgatga cgatcatctc gccgtcgact ggattcaccg cgaactggat
      241 gttgcatcca cccgcggcga caccgatctc gcgaatcacg gcgaccgacg cgtcgcgcat
      301 gagctgatac tcgcgatccg tgagcgtcat cgccggcgct actgttatcg aatcgccggt
      361 gtgcacaccc atcggatcga tgttctcgat ggagcatacg atcactacgt tgtcagccgc
      421 atcgcgcatc acttccagct cgaattcctt ccatccgatg agactgcgct ccacgagcac
      481 ctgactcatg ggcgagagat cgagtccgcg cttcactatc tcctcgaact cgtcgcggtt
      541 gtacgcgatt ccaccaccgc tgccgccgag cgtgaatgcg ggccggatga tcgacggaaa
      601 gccggtgtcc tcgacgagca cgagcgcttc ttcgtaagtc gtcgcagttc caccgcgcgc
      661 gacctgcagt ccgatgcgct tcatcgcctc gttgaacagc gcgcgatcct cggcggtgcg
      721 tatcgcgcgc tcgtcggcgc ctatcagctc gacgccgtat ttctcgagca cgccgttctg
      781 ggatagcgac atcgcgacgt tgagcgccgt ctggccgccc attgtcggca gcagcgcgtc
      841 ggggcgttcc ttctcgatca cgagctcgac gaacttcgga gtgaccggtt cgacgtatgt
      901 cgcgtcggcg aattccgggt cggtcatgat agtggcggga ttcgagttga tgagaatcac
      961 ctcgtatccc tcttccttca gtgccttcgt cgcctgcgtg cccgagtagt cgaattcggc
     1021 gccctggccg atgactatcg ggccggagcc gatgacgagg atgcgatgga tatcagtacg
     1081 ctttggcatt tcgaccttct aagatacaaa aacggggcga ctgacgagtc gccccgaatg
     1141 aggaggaatc tgaagacgtc agggcgttca ggctaccgcc tgactccgcg gcgcccggac
     1201 gaccttgccg gcggcgaggc agctcgtgca gaccttgacc ttgacgatct tgtcggcgac
     1261 ggcgacgcgt gcaacctgga ggtttggctt ccaggtgcgg cgggtcttgt tgttggcgtg
     1321 cgagacgttg ttaccgaagg taacgccctt gccgcaggcg tagcacttgt tccgctcgat
     1381 cgccttggta cgcttctcgg cgagttggct cttcattttc atttggtctc cggcatgagc
     1441 tcgatgcggg ccatttcggc gccgtcaccc ttgcggtggc cagtcttgag gatgcgcgtg
     1501 tagccgccct ggcgtgtcgc gaacttcggt gcgacttcct tgaacagctt gtcgttcacg
     1561 gcacgctgct gcacgtgacg ggccgcaaga cggcgggagt gaagcgtgcc ttccttcgcc
     1621 ttcgtgatca gcttctcgac gaagggccgc agctccttgg ccttggcttc ggtcgtctcg
     1681 atcgcgccgt gctggatcag cgactgcgca aggttccgaa gcagcgcgag gcgctgctcg
     1741 ggggtgcgcc gaagttgccg gccgactttt ctatgtcgca tctaaaaatt cctcaagggt
     1801 ccaatggcgt gcctgcccgt ctccggactg gcgccaaact tcgatcgtcg tcgtactgcg
     1861 ggcgggcacg ggggcctgcc cctacaacat ccacgtaacg caaggcgcgg atgcatccgc
     1921 gccctactta atcctcgtcg tcgccgatgg cggcttcggc gagcgcggcg cggttcggag
     1981 gggtgccccg atccgtgatc cgcacgcctt cttcagactg ctcgaacttc atgccgaagt
     2041 tcagattctc gcgctcgagc agctctgcga tttcattcag tgacttcttg ccgaaattct
     2101 tgacgtcgag gatctgatcc tcggtgcgct tgacgagatc gccgagcgtc cggatctcgc
     2161 tgttcttgag cgaattgacg gagcgaacgg agagctcgag atcctcgatc ggcgtcgaga
     2221 gcagctgtgc aagccgtgct gcgtcgttgc cgcccatctc gctggcggca gtgatcggag
     2281 ccgacgtgtg cgagccgaag cccgcgaaat actggaagtg cgtctgcgcc agagccgcgg
     2341 catagctcac cgcttcttcg ggcgagatgg tgccgttggt ctcgacgagc agcgtaagac
     2401 gatcgtagtc ggtacgctgg ccaacgcggg tcgcgtcgac gctgaagttg cagcgacgaa
     2461 ccgggttgta gatcgagtcg atgcggacga ggtcgacagg aagattccgg tcggcgacgt
     2521 gctgatcggc ctcgacatag ccacggccat gattgacgta cagctcgaac gttatgtcgc
     2581 gatcgtcctg cagcgtgaag aggtgatggt cgggctcgag aacggtgagt ccggctgcac
     2641 cggtgatgtc gctggccttg atcgctgccg gtccggtctt ggtaacgcga acgacggtgg
     2701 tctcggtcgc gtcatcgagg ctcaggacga gcgtcttgag gttggcgatg atctggtgaa
     2761 cgtcttcaac gacacctgga atggtctggt gctcgtgtac gacgccatcg atgcggaaac
     2821 cccagacggc agagccgcgc agcgatgaca gaagcatgcg gcgcattgca ttgccgagtg
     2881 tgtagccaaa gccgcgctcg agcggctgca gccggaactc ggcgacgttg ggtgtgtcct
     2941 cgcgcttggt ggactctacc agctgcgggc gtacgagccc gcggagatct attgcgttag
     3001 ccatgatgtt tgtctgattt aaccgttacc ccgcccctaa cgcgtggtaa gtcggtacga
     3061 aggttagggc ctcgtttgat acgacacgac gagggcggcc acagggcccg cccctacgcg
     3121 tttatttcga atacaactcc acgaccaact gctcctgcgc tgcgatcggg atgttcgggc
     3181 gtgtcggacg ctccagcatc cggccgctga acgactcctt gtcgacggcg atccacgaga
     3241 gcggagcgcc gcgcgaagcc tggtccatcg aaacgatgat cgacgcctgc tcgcgcgact
     3301 tggcgcgaac gcgcacttcc tgaccgggct gcacgaggaa gctaggcacg tccaccgact
     3361 ttccattcac ctcgacgtga cggtgacgga cgagctggcg agctgccttg cggctctgcg
     3421 cgaagcccat gcggtagatg atgttgtcca gacggctctc gagcgccgcg agaagattgt
     3481 gtcccgttac gccgggcagc gtcgtgacgc gctcgaacgt gttgcggaac tgcttctcac
     3541 tcacgccgta aatgcgcttg atcttctgct tctcgcgcag ctgcttggag tactccgaaa
     3601 ccttgcggcg gcgagcgacg ctcgcgccat gctgtcctgg cggcgtcgga cgacgctcga
     3661 ccgggcactt ctcggtgaag cacttggtgc ccttgaggaa gagcttggtc ccctcgcggc
     3721 ggcactgacg gcagcttggt cctgtgtaac gcatgtacta aaccctccgc cgcttgggcg
     3781 gacggcaacc attgtgtgga atcggtgtta cgtcgcgaat cgacttgacc tgcagaccag
     3841 cggtggcgag cgcctgaatc gcagactcgc gaccagagcc gggaccctgc acacgcacgt
     3901 tcacgcggcg aacgccggcg gagaaggcct cgcgtccagc ctgctcgcca gcgacagtcg
     3961 cggcgaacgg agtggacttc ttggagccct tgaatcccgc cttgcctgac gagctccacg
     4021 agatcgtgtt gccgcggttg tccgtgatcg tgatcgtcgt gttgttgaac gtcgccgaca
     4081 cgtgagcgag gccctcggcc tcgacgatct tctttacttt cttcgcagtt gccatgtgtt
     4141 acttcgtaac cttcttcttg ccggcgatcg cgcggcgcgg ccccttcttg gtgcgggcgt
     4201 tagtgtgcgt gcgctgtcca cgaaccggaa gaccgcggcg gtgacgcgtg ccgcggtacg
     4261 agccgatgtc catgaggcgc ttgatgttca tcgcgacttc ggtccgaaga gcgccctcga
     4321 ccttgaggtc gcgctcgatg gcctgacgaa gcttgttcgt gtcagcatcg ttcagatcgc
     4381 ggacgcgctg cgaaggactc actcccgtcg attggagaat ggactgagcg gtcttgcgac
     4441 cgatgccgaa tatgtaagta agcccgatct cgagcttctt gtcgcgcgga agatccacgc
     4501 ccgcaatacg agccattagt taaccctgac gctgcttgtg cttgggattg cggctgcaaa
     4561 tgatccggat aacgccctgg cgcttgatca ccttgcaatg ctcgcagatc ggcttgacgc
     4621 tgctacgtac tttcacgaac tgctccgaat tttgggtcag cctttgaaaa tagtccggtc
     4681 acgccagcga cgcaaccgcc tgatccattg ccgccccggg gtcgtcggcc gatgtcacgg
     4741 tccgacccag taccacatac gacgcgcccg cctgggcggc ctccgccggt gtcaccacgc
     4801 gggtctggtc gccccggtcg ctgcctggca acctcacccc ggggaccagg agcttgagat
     4861 cggctccgaa gcggtccctg agcaccggag cctccagtcc gctgcaaacc acacccgcga
     4921 cgccggcgtc cttcgcgagc ctcgccagcc gcagaacgtc gggtgtaaga tcgctgcccc
     4981 cgcccctccg cgcgccgccc cacaccgcat ccagatccgt gccgctgagc gaggtcagca
     5041 cggttacggc gaagacctcg cagcccgggc cggcgatgtc caccgcggcc cggatcatcc
     5101 ggagcccgcc gctcgcgtga accgtaacta tcgaggcgcc cagctccgcc gccgctgcgg
     5161 tggccttctc gacagtgttg ggaatgtcgt ggaacttgag atcgagaaag acgcgcttgc
     5221 cgcgcgcgac cagctgtcgc acgatcgtcg gtcccgccac ggtgaagagc tcgcctccga
     5281 ccttgtagaa gtcgcaccgg tccccaagca ggtcgaccat ctgcagcgca gcgtcggcca
     5341 tccagaaatc cagcgcgacg attggcgtcg catgtggtgt cacgcggctc gactgagtca
     5401 tgagggccga gtcatgcggg ccactgcaac gttccaacaa cgtcctgaat tgcagccact
     5461 ccgtgctcgt cgcaccagcg cgacagatcg cgtacgatgc gctcggcggt gcgcggatcg
     5521 cgaaggcttg cggtcccgat tgcgaccagc gacgcgcccg cgatcatgta ttgcagtgcg
     5581 tcgctcgcgg atgtcacgcc gcccacacca attatcggaa gcgacactgc gcgccgcacg
     5641 cgataggtcg ccagcactcc cacggggagc aacccgggac cactcgcgcc accactgccg
     5701 aagccgattc gcggacggcg agcgtcgacg tccaccacaa ggccgggcag cgtgttcacg
     5761 acggtgatcc cgtcggcgcc tgccgcggcg gcagtgagcg cggcatcgcc gatgttgggc
     5821 agcacgggtg acagtttgac gaagatcggt ttccgcgtcg ccgatcgcgc gccggatacc
     5881 acggccgcga gcgatgcgct gtcggcacag a
//
LOCUS       DATIMD010000443         6792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_178797, whole genome shotgun sequence.
ACCESSION   DATIMD010000443 DATIMD010000000
VERSION     DATIMD010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6792
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178797"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /locus_tag="VLI40_09810"
     CDS             complement(<1..233)
                     /locus_tag="VLI40_09810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97515.1"
                     /translation="MNASDPIQTPVTGRENSEDQREAAQALAQFYRALNSRDLELMQR
                     NWVNSVEAAMDNPLGGIKRGWAEIKPTYEKLFA"
     gene            complement(789..1217)
                     /locus_tag="VLI40_09815"
     CDS             complement(789..1217)
                     /locus_tag="VLI40_09815"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HSU97516.1"
                     /translation="MSRVLVDTGPIVALLNRRDRHHAWVRKVLDTIEPPIFTCEAVIS
                     EACFLLGRFTHGPDTVLELLANDVLKVDFQIRSELDSLRKLMQKFASVPMSLADACLV
                     RMTELERETVIVTLDSDFHVYRRNRRHVIPTIMPGQRKGG"
     gene            complement(1214..1453)
                     /locus_tag="VLI40_09820"
     CDS             complement(1214..1453)
                     /locus_tag="VLI40_09820"
                     /inference="COORDINATES: protein motif:HMM:NF013561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HSU97517.1"
                     /translation="MATPMRTVSFKLPEDLDEALTGLARRRNASRSALVRDALRAVTA
                     GSDRSVTNVVDQLVKPFDGPADLSTNPKHMTGYGK"
     gene            complement(1554..2285)
                     /locus_tag="VLI40_09825"
     CDS             complement(1554..2285)
                     /locus_tag="VLI40_09825"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSU97518.1"
                     /translation="MPNRHSSIIVPLVLAMFLALGCATGGTAADHTANSVNAASSSAA
                     ILLDPANPEWRRAAPAVSHLRFETTKGVFVLELVRAWGPIGADRLYNLARLGYYNDTR
                     FHRVDAGYIAQWGINGNPAVNAAWKDQQIVDDPPRSHNVRGTYAFSQFPPSSGRSNTR
                     NTQIYVNLKDNLRNDAEPFTVLGTVVEGMDVLDSLYSGYGEKSGGGVRQGKQGPLEAG
                     GNAYMDREYPKLDRILRVTVTTVER"
     gene            2618..3190
                     /locus_tag="VLI40_09830"
     CDS             2618..3190
                     /locus_tag="VLI40_09830"
                     /inference="COORDINATES: protein motif:HMM:NF015658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF305 domain-containing protein"
                     /protein_id="HSU97519.1"
                     /translation="MLLAVPAAAQAQQSMAGMNMGDHGKITIPPGVLYTVPDVEFMQG
                     MIAHHGQAIYMSRLAAAHKADPRVLKLADKIDQSQVAEIRIMQDWLVRNKQFAPDSAA
                     WRTVTMPGMLTAAQLKELDAATGTAFDRAYLTYMTQHHKGALKMVDDLFATPGAAQDV
                     DVNVFANDVVAVQTAEIDAMRRMLSKLPEN"
     gene            3235..5019
                     /locus_tag="VLI40_09835"
     CDS             3235..5019
                     /locus_tag="VLI40_09835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97520.1"
                     /translation="MQISRRIFALIAPMIVVPSILAAQTYPSGNDPRNGLKPGRLDAG
                     VAAENMRLVSFSPKPAAFDTARGLTFINSDLAFSNKYVYQGNFAGFTVWDVSNPNAPK
                     TVAVVSCITAQADPSVYGNLLFISAEGRGNRNDCAKGGVQDPKDHMAGVRIYDVSNPA
                     SPRLIKNVQTCKGSHTHTIVPDPKDKGVIYIYVSGNQEARPATELAGCNNGTDPADEN
                     NSLYRLDVIRVPLAHPEQSAVVTGARIFTGLDPAARAAGRPARAPRAGEEPAPATGPR
                     NCHDVTAYPAMNLLAGACASYGLLVDISNPMKPVRLDAVSDTNFSLWHTAVFSNDGKQ
                     VVFTDEWGGGTGPMCQATSMMQMGGNTTLTIDSKRKLTQHAYFKIPSAQTAQENCVSH
                     NGGLIPIPGRDIMAQGWYQGGVDVIDFTDPDHPKELAFYDRGPIDAAPTAPEGARGTR
                     GTIGGSWGAYWWNGLIYSSELDRGFDIYELTPSDQLSANEIAAAKLVHLEQYNPQSQP
                     HIVWPAAFPVVRSYLDQLVRGNGLAAERTTAIASALDAAEKQSGKQRRAALETLASQV
                     NKDVNGAQDSARVKSMATAITALAKATE"
     gene            complement(5069..5479)
                     /locus_tag="VLI40_09840"
     CDS             complement(5069..5479)
                     /locus_tag="VLI40_09840"
                     /inference="COORDINATES: protein motif:HMM:NF015180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerC domain-containing protein"
                     /protein_id="HSU97521.1"
                     /translation="MSRTLRVADSAGVIGAVLAALCCAGAPIILSVLAALGIGFLRSD
                     AILLPFMSVALIIALWGFWSDARTHRGYGPLTLAIAGAVSLVAGVVFVHGMPAKALIG
                     VGAIALVVGTLWNARCRATCAPQGAATAEELPER"
     gene            6245..>6792
                     /locus_tag="VLI40_09845"
     CDS             6245..>6792
                     /locus_tag="VLI40_09845"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU97522.1"
                     /translation="MYPKFCGRTLRRQHCARHVRIARGIGIPFRVATVGVLVALATVS
                     GSANGQAKATMRVTDRGSLVTARLARRATDADSDAATLDSLLALARTRNPAVRAAESR
                     VVEAHATIGPAGARPDPMLMAGVLDFPYGKVGYTDNFTMNMLRVTQTFPYPGKLSLAT
                     RAAEEDETGARATLAQQRLDVER"
BASE COUNT         1336 a         2160 c         2026 g         1270 t
ORIGIN      
        1 ctggcgaaca atttctcgta ggtcggtttg atttcggccc agccgcgctt tatccctccc
       61 aagggattgt ccatcgcggc ctccacggaa ttgacccaat ttcgctgcat cagttccaga
      121 tcacgcgagt tgagggcacg atagaattgc gcaagcgctt gagccgcctc gcgctgatct
      181 tcgctatttt cgcgccctgt gacgggcgtt tgaatcggat cacttgcatt cattgagtag
      241 tcctccgtgg tgaatcggaa gctctgcagg atccgaaccg ccactcatgc actcttcgta
      301 ctgccgctga cggtgcgctc tacgctggct cgaatggatg cgaagcttcc gacctgccgc
      361 gtcgattgtc tgacagggac gtcttgacac ctcctgtggt cgcgcggagg tttcaccggg
      421 tcagtctcgc tgttcccttt acggaggttc gtccggatga aggaactacg ctgcagagat
      481 gtcggtttcg attgcggtgc cgtcgtgcgc gccgagaccg aagaggaagt gctcaggcaa
      541 gctgctgagc acgcaggtac tacgcatggt ctgacaaatc tcgacgccga cactgtgcag
      601 aaaattcggt caaagatccg aacggactga gtccgtcggt gcaggtcgcg cgtccggaac
      661 cccacgcgtc ccctcggtgt gccacatact tcattctatg atggcgtaac ggaggagatg
      721 cggggtcaac cgcgccctgt gaacagctgt ggcaggtagc tttgcgattc agatatcctg
      781 agtgatcctc agccgccctt tcgctgaccc ggcatgatcg tcggaatcac atggcgacga
      841 ttccggcgat aaacgtggaa gtcgctatcc agtgtgacaa tcacagtttc gcgctcaagc
      901 tccgtcatcc gaaccaggca ggcgtccgca agggacatcg gaacactcgc gaatttctgc
      961 atcagcttgc gaagcgaatc gagctcggag cgtatctgaa aatcgacttt caggacatcg
     1021 ttggccagaa gctcgagcac tgtgtccggc ccatgcgtga atcttccaag caggaagcag
     1081 gcttccgaga tgacggcctc gcatgtgaag atcggtggct ctatcgtgtc gagcaccttg
     1141 cgaacccacg cgtggtgacg gtctcgtcga ttgagcaggg caacgatggg cccggtatcg
     1201 acgagtacgc gactcacttg ccataccccg tcatgtgctt tggattggtc gagagatcag
     1261 ccggtccatc gaagggcttc accaactgat cgacgacgtt cgtcacggag cggtcgctgc
     1321 cagcagtcac cgcccgaagt gcgtcgcgaa ccagagcgga gcggcttgcg ttgcgacgtc
     1381 gagccagacc ggtcagggct tcatcgagat cctcgggcag cttgaacgag accgtgcgca
     1441 tcggagtggc catcgtatta cctcctgatc ataaaggtaa taccacgata atgcgaaaat
     1501 caacgacgtt cttcaactgg gttgatccac aatgtgctgc gcatgtcgct cgctcagcgc
     1561 tcgaccgtcg tcaccgtcac tctcaatatc cgatcgagct tcgggtattc ccgatccatg
     1621 tacgcattcc ctcccgcctc gagcgggcct tgcttgccct gccgcacacc gccgccggat
     1681 ttttcgccgt agcctgaata caggctgtcg aggacgtcca tcccctcgac cacggtcccc
     1741 agcaccgtga acggctcggc gtcgttgcgc aggttgtcct tcaggttgac gtagatctgc
     1801 gtgttgcgcg tattcgaacg gcccgagctc ggcgggaact gcgagaacgc gtacgtgccg
     1861 cgcacgttgt gcgatctggg cggatcgtcg acgatctgct gatccttcca cgcggcgttc
     1921 actgcagggt ttccgttgat cccccactgc gcgatgtagc cggcgtccac gcgatggaag
     1981 cgcgtgtcgt tgtagtagcc gagccgcgcg aggttgtaga gacggtccgc gccgatgggg
     2041 ccccacgcgc gcaccagctc aagcacgaac actcccttgg tcgtctcgaa acggagatgc
     2101 gacacggcgg gcgccgcgcg gcgccactcg ggattcgccg ggtcgagcag gatggccgcg
     2161 gaactgctgg ccgcgttcac gctgttggcc gtgtggtcgg cagcggtccc gccggtagca
     2221 caacccagag ccaggaacat cgcgagtact agtggtacaa tgatggatga atggcggttc
     2281 ggcatcgtca taatgtacgc gtcgcagtgg cggagacgct cgccgcgcgc gttggcattg
     2341 acccgatggt ggatggcgac catgaaggga aaccccgatt catcaacggt tcgcttgccg
     2401 atgccgtagt tggatacgag gcagccatga tgtctcgatc ggcggttccg acccagcggc
     2461 ctctcgcatg caccaggcag cggccggggt tgactggata ccagccgcgg ctacaacgta
     2521 cgcaagtaac ttttcgccga ttcttccctc accccgtggc cccggcagac ccgtgaattt
     2581 ctctcgcctc actgctaccg cactcacggc cctcggattg ctgctcgccg tgcccgccgc
     2641 cgctcaggct caacagtcga tggcggggat gaacatggga gatcatggca agatcacgat
     2701 cccgcccggc gtcctctata cggtgcccga cgtcgagttc atgcagggca tgatcgccca
     2761 ccacggacag gcgatctaca tgtcgcgcct ggccgccgcg cataaggccg acccccgcgt
     2821 gctcaagctc gcggacaaga tcgatcagtc ccaggtcgcg gagatccgga tcatgcagga
     2881 ctggctcgtc cgcaacaaac agttcgcacc ggactcggcg gcatggcgca cggtgaccat
     2941 gccgggtatg ctcaccgcgg cgcagctcaa ggagctcgat gccgccaccg gtaccgcatt
     3001 cgatcgtgca tacctcacct acatgaccca gcaccacaag ggcgcactca agatggtgga
     3061 cgatctcttc gccacccccg gtgccgcgca ggacgtggac gtgaacgtgt tcgcgaacga
     3121 cgtcgtcgcc gtccagaccg ccgagatcga cgcgatgcgc cggatgcttt cgaagttgcc
     3181 cgagaactga gtccccttac acacccgctc acacaacacc aggagcctta cctgatgcag
     3241 atctcccgta ggatcttcgc tctcattgcg cccatgatcg tcgtaccgtc gatcctggcc
     3301 gcgcagacct acccaagcgg taacgatcct cgcaacggcc tcaagccggg gcgcctcgat
     3361 gctggtgtcg ccgccgagaa catgcggctg gtgtcgttct cgcccaagcc ggcggcgttc
     3421 gatacggcgc gcggactgac gttcatcaac tcggacctcg ccttcagtaa caagtatgtc
     3481 tatcagggca actttgccgg tttcacagtt tgggatgtga gcaatccgaa cgcgccgaag
     3541 acagttgcag tcgtgtcatg catcaccgct caggctgacc cgtcggttta cgggaacctg
     3601 ctcttcatct ctgcggaagg gcgtggaaat cgcaacgact gcgcaaaggg cggcgtgcag
     3661 gatccaaagg accacatggc cggcgtccgc atctacgacg tatccaatcc cgcctcgcca
     3721 cgcctcatca agaatgtgca gacgtgcaag ggatcgcaca ctcacacgat cgttcccgat
     3781 cccaaggaca agggtgtgat atacatctac gtctcgggca atcaggaagc acgtccagcc
     3841 actgagctcg cgggatgcaa caacgggaca gatccggcag acgagaacaa ctcgctctac
     3901 cggctcgacg tgatccgagt gccgctcgcg caccccgagc agtccgcagt ggtgaccggc
     3961 gcgcgcatct tcacggggct cgatcccgcg gctcgcgccg ccggccggcc ggcccgcgca
     4021 cctcgtgcgg gcgaagagcc agcaccggca accggcccac gcaactgcca cgacgtcaca
     4081 gcatatccgg cgatgaatct ccttgccgga gcatgcgcga gctacgggct gctggtggat
     4141 atctcgaatc ccatgaagcc cgtgcggctc gacgcggttt ccgataccaa cttctcgctc
     4201 tggcataccg ccgtgttcag caacgacggc aagcaggtcg tgttcacgga tgagtggggc
     4261 ggcggtacgg gtccgatgtg ccaggccacg tcgatgatgc agatgggcgg caacactacg
     4321 ctgaccatcg actcgaagcg aaagctcacg caacacgcgt acttcaagat cccgtcagcg
     4381 cagacggcgc aggaaaactg cgtctcgcac aatggaggat tgattccgat ccctggccgc
     4441 gacatcatgg cgcagggctg gtatcagggc ggcgtggatg tcatcgactt cacggatcct
     4501 gaccatccga aagagctggc tttctacgac cgcggaccga tcgacgccgc tcccacagca
     4561 ccagagggtg cgcgtggcac gcgcggaacg attggcggat cgtggggcgc gtactggtgg
     4621 aacggactga tctattcgtc cgagctcgat cgtggattcg acatctacga gctcacgccc
     4681 agcgatcagc tatcggcgaa cgagatcgcg gcggcaaagc tggtgcatct cgagcagtac
     4741 aatccgcaga gccagccgca catcgtgtgg ccggcggcat tcccggtggt ccgctcctat
     4801 ctcgaccagc tcgtacgcgg caacggcctc gccgcggagc gtacgaccgc aattgcgagc
     4861 gcgctggacg ccgcggaaaa gcagagcggg aagcagcgcc gcgcggcact cgagacgctc
     4921 gccagtcagg tcaacaagga tgtgaatggc gcacaggatt ctgcgcgcgt caagtcgatg
     4981 gctacggcga tcaccgctct cgcgaaggcg actgagtagc ggagcttaaa gattgcgttg
     5041 atcgccatcg gagagactcc gatggcggtc aacgctccgg aagttcctcg gccgtcgctg
     5101 cgccctgagg cgcgcatgta gcacgacacc gtgcgttcca gagcgtcccc acaaccagcg
     5161 ctattgcacc cacgccgatc agagctttgg ccggcatccc gtgcacaaac acgacaccag
     5221 cgacgagcga caccgcgcca gcgatcgcaa gcgtgagcgg tccatagcca cggtgtgttc
     5281 gtgcgtcgga ccagaatccc cacagtgcga tgatcagcgc cacgctcatg aagggaagga
     5341 gaatggcgtc gctccgcagg aacccaattc cgagtgctgc gagcacgctc aggatgatcg
     5401 gcgcgccagc gcagcagagg gcagcgagta ccgcgccgat cactccggcg ctgtcagcga
     5461 cgcgcagcgt gcggctcatg attgactgct gctgccgcga gcgaccaatc gctcaggata
     5521 ggtcaatacc gacatggtct taaggctgtc atcagataat gatactccca tgatcgtact
     5581 cgaacctgca gccacaatcc atatgaatcc gcggcatcag caacagcatg atcgcccggc
     5641 tcctctggaa cttcctttcc cacaatggta ctatcccttt gtcatgatcg cggttcccag
     5701 gcgccattcc atgaggctct cctctttcgt cgccacgctg ctatccggcg tgttgacctt
     5761 ccagctggcg ctggcggggg gtggaatgct gtgtcttatg ccgaatggcg acggcatgtc
     5821 gtcgatgcaa gctatgccag gtgcatcacg agtagtcgtg cacggcccgc aacgcgatag
     5881 tgaaggcaag gctgggactc cggccgatca gcagtgtgat ggtcacggtc agcctgtgca
     5941 gtgcgtgacc atggcagcgt gcgcgccgag cgttattccg gttgctcgtg ctgtcacgct
     6001 cacaccgcca agagtacccg ccgtcgtcgt gtccgcaccg gtgattgttc ctccctcgca
     6061 aacctcggcg ccagaactcc cccctcctcg ggcctagtcc agcctgcact cggctaccaa
     6121 cgtagccgac cgtacgccgc ccggcagtgt ccggatacct cggatgcacc gcgcaggatc
     6181 gaccatgctg cgtcgtcacg aatgacggcc cggatggtga tcccggactt caatcgaagg
     6241 gctcatgtat cccaaatttt gcgggcgcac tctgcgccgg cagcactgcg cacgccacgt
     6301 ccggatcgcc cgtggaatcg gcattccatt tcgcgtcgca actgtcggtg ttctcgtcgc
     6361 acttgccacg gtctccggtt ctgccaatgg tcaggcgaag gcaacaatgc gagtgaccga
     6421 tcgcgggtca ttggttacag caaggctcgc acgccgagca accgatgcgg actctgatgc
     6481 ggccacactc gactcactgc tcgcactcgc tcgcacgagg aatccagccg tgcgagctgc
     6541 ggagtcacgc gttgtagagg cacatgcgac aatcggtccg gccggagcaa gacccgatcc
     6601 catgctcatg gccggtgtgc tcgacttccc gtacggcaag gtgggctaca ccgacaactt
     6661 caccatgaac atgctacggg taacgcagac attcccgtat cccggaaagt tgtcacttgc
     6721 gacgcgtgca gctgaagaag acgagacagg ggcacgcgct acgcttgcgc aacagcgatt
     6781 ggacgtggag cg
//
LOCUS       DATIMD010000444         4363 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3068833, whole genome shotgun sequence.
ACCESSION   DATIMD010000444 DATIMD010000000
VERSION     DATIMD010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4363
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3068833"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..197
                     /locus_tag="VLI40_09850"
     CDS             <1..197
                     /locus_tag="VLI40_09850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU97523.1"
                     /translation="AFVGMFVGWLGTLALRALTPIAASIPLWSIGTAVGASVVTGIIF
                     GMLPALRASRLDPVEALRYE"
     gene            278..1003
                     /gene="bshB1"
                     /locus_tag="VLI40_09855"
     CDS             278..1003
                     /gene="bshB1"
                     /locus_tag="VLI40_09855"
                     /inference="COORDINATES: protein motif:HMM:TIGR04001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019213 - deacetylase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol biosynthesis deacetylase BshB1"
                     /protein_id="HSU97524.1"
                     /translation="MRMADVEILAIAAHRDDIELTCGGTLIKSARQGRTTAIIDLTAG
                     ETGTRGSAELRAQESEAAAKILGVSQRINLGLPDAGLVNTPETRALLATAIRKLRPRI
                     VIAPPLEGRHPDHIVAGQLVRDACFIAGLAKVAPETPPHRPRKVIHAIAFREDHVKPT
                     FVVDISDVFDDKMRAVRCYASQFDDAIQAGEVYPTGEPLYDVIRHQSAHYGSLIRTRF
                     GEPFYTTETMRVDDIGALEVATF"
     gene            1000..1734
                     /locus_tag="VLI40_09860"
     CDS             1000..1734
                     /locus_tag="VLI40_09860"
                     /inference="COORDINATES: protein motif:HMM:NF015272.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004833 - tryptophan 2,3-dioxygenase
                     activity [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase family protein"
                     /protein_id="HSU97525.1"
                     /translation="MTDDEPTYPTYLKLAELLSLQVPRSSPEHPDELLFITVHQSSEL
                     WFKLILHELGKLRNSIANGHVLEAVESVGRVNGLMRIVTAQLHALDTLSPQGFSQFRH
                     NLGTSTGGQSAQFRAIELISGLRDPGYLEYLKSQQPLDPIVERALSQAPLPELFAQLL
                     SQRGVTARTLYATNEARELRLLAEGLLSYEQEFAMWRFLHVEVIERVIGPGTPGTGGS
                     LGAKALRDTLGNRFFPELWAVRAEFY"
     gene            1746..2906
                     /locus_tag="VLI40_09865"
     CDS             1746..2906
                     /locus_tag="VLI40_09865"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase family protein"
                     /protein_id="HSU97526.1"
                     /translation="MAQSPIYLDNAATTPVREEVFEAMRPFFGPKFGNPSSLHSFGRE
                     ARAALDEARERLAVCLGAHPDEVSFNSCGTEGDNTAVLCLWRAMRSFGRNAVVTTPIE
                     HKAVLAAAHEVAHEGGEERILDIDSNGVVVDASFDENVRDDVAVTSVMWVNNETGVIQ
                     DIPALAQRARSRGVAFHTDAVQAFGKVVIDARTQPFDLLSISGHKIGAPKGIGALFIR
                     RGTAFEPLIRGGSQDRGRRAGTENLAYVVGLATAAELAVAEREQHWKETEHMRDRLQA
                     LLLAAIPDAVVHSRGARRAPHVLNISVPGTDNESMLMALDLRGIACSGGSACQSGSVT
                     PSHVLSALGVDPALANAAVRMSFGPINTEADVDRVAEVFPKLVAKARSMAAA"
     gene            2953..4059
                     /gene="mnmA"
                     /locus_tag="VLI40_09870"
     CDS             2953..4059
                     /gene="mnmA"
                     /locus_tag="VLI40_09870"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HSU97527.1"
                     /translation="MLPNRVLVAMSGGVDSSVAAALLVERGYDVVGVTMKLFSDGSEV
                     PDRPCCSLDSVNDARRVCERLGIPHYVLNMESRFGHDVMDDFVAEYVAGRTPIPCVRC
                     NTFTKFRDLLHTADNIDAQWIATGHYARVSGGELLRGSDDAKDQTYFLWGIDRAVISR
                     MILPVGDMTKSETRAIATRLGLTMVANKADSQEICFVPDGDYVKVIAQRAGADSPALQ
                     RGPIVHSDGRVLGEHDGYARFTVGQRRGLPGGFAEPLFVVEIRPEDRAVIVGSRDELL
                     GTGVAATEVNWLVEAPPLPGDAVQVRIRHHSPLTHGVVLRAEDGEVEIALDEAVVAIS
                     PGQSLVIYSGDRLLGGGFIASPRRVRAELPLLAV"
     gene            4113..>4363
                     /locus_tag="VLI40_09875"
     CDS             4113..>4363
                     /locus_tag="VLI40_09875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97528.1"
                     /translation="MRPLSAILIGTALLSPVQWAQAQAYAFRQYGADAGVDPATALAF
                     DSDGQLLIGTNDGLLRLDGRDVTRVALAATHVGVVRLAAG"
BASE COUNT          749 a         1348 c         1436 g          830 t
ORIGIN      
        1 gcgcgttcgt cggcatgttc gtcggctggc tcggaacgct ggcgctccgc gcgctgacgc
       61 cgatcgcagc gagcattccg ctctggtcca ttggaacggc ggtcggagcg agcgtggtga
      121 ctggaatcat cttcggcatg ctgccagcgc tccgagcctc tcgtctcgat cccgtcgaag
      181 ccctgcgcta cgagtagctc ttccggttca tgcttggtgc cagccgcggc accgagcata
      241 aaccgaatga ccaatcggcc gcctgcgccg taatttcatg cgcatggcag atgtggaaat
      301 actggcgatc gccgcgcatc gcgacgacat cgagctcacg tgcggcggca ctctcatcaa
      361 gtccgcgcgg cagggccgca ccaccgcaat aatagatctc accgctggcg agaccggcac
      421 gcgcggctct gcggagctcc gggcgcagga gtccgaagcc gccgcgaaga ttctgggcgt
      481 cagtcagcgc atcaatctgg ggcttcccga cgccggcctc gtgaacacac cggagacacg
      541 cgcgctgctc gcgacggcga tccgcaagtt gcgcccccgt atcgtaatcg cgccaccgct
      601 tgagggacgg catccggacc acatcgttgc cgggcaactg gtgcgcgacg cgtgcttcat
      661 tgccggtctg gcgaaggtcg caccggaaac gccgccgcac cggccccgga aagtgattca
      721 cgcgatcgcg ttccgtgagg accacgtcaa gccgacgttc gtcgtggaca taagcgacgt
      781 gttcgacgac aagatgcgcg ccgtcaggtg ttatgcgtcg caattcgacg acgcgatcca
      841 ggcaggcgaa gtatatccca cgggcgagcc gctgtatgac gtgatacgac atcagtcggc
      901 acactacgga tcgttgattc gaacgcgctt tggcgagcca ttctacacta ctgaaaccat
      961 gcgagtcgat gatatcggcg cgctggaggt cgcgacattt tgacggatga cgagccaacc
     1021 tatccgacat acctgaagct cgccgagctg ctttcgttgc aggttccacg cagctcgccc
     1081 gagcatcctg acgaattgct gttcatcacg gtgcatcagt cgagcgaatt gtggttcaag
     1141 ctgatattgc acgagcttgg caagctgcgg aattcgatcg cgaacgggca tgtgctcgaa
     1201 gcggtggaat cggttggaag agtgaatgga ctgatgcgga tcgtcacagc gcagcttcac
     1261 gcgctcgaca cgctgtcgcc gcaggggttc tcccagttcc ggcacaatct cggaacctcc
     1321 accggtggcc agagcgcgca gttccgcgcg atcgagctga tctcgggact gcgggatccc
     1381 ggctatctgg agtatctcaa gtcacaacag ccactcgatc caatcgtcga acgagcgctg
     1441 tcgcaggcgc cgctaccgga gttgttcgca cagctgctgt cgcagcgcgg ggtgacggca
     1501 cgcactctgt acgccaccaa tgaggcgcgc gagctcagat tgctggccga gggtctgctg
     1561 tcgtacgagc aggagttcgc gatgtggcgc tttctgcacg tcgaggtgat cgagcgcgtc
     1621 ataggcccgg gcacgccggg caccggcggc tcgctcggcg ccaaggccct ccgcgacacg
     1681 ctcggcaacc ggttcttccc ggagctgtgg gcggtccggg cggaatttta ttagctttcg
     1741 tagagatggc acagtccccg atctacctcg ataacgccgc gaccacccct gtacgcgagg
     1801 aggtgttcga ggcgatgcgg ccgttcttcg gtccgaagtt cggcaatccg tcctcgcttc
     1861 acagcttcgg ccgcgaagcg cgtgctgcac tggatgaagc gcgcgagcgc ctggccgtct
     1921 gccttggcgc gcatccggac gaggtatcgt tcaactcgtg tggcaccgaa ggcgacaaca
     1981 ctgcagtgct ctgcctgtgg cgtgcgatgc gcagcttcgg acgcaatgcc gtcgtcacaa
     2041 ctccgatcga gcacaaggct gtgctcgcgg ctgcgcacga ggtcgcgcac gaaggcggag
     2101 aggagcgcat cctcgacatc gattcgaatg gagtcgtcgt cgatgcgtca ttcgacgaga
     2161 acgttcgcga cgatgttgct gtaacgagtg tgatgtgggt caacaacgaa acgggtgtca
     2221 ttcaggacat ccctgccctt gcgcagcgcg ccaggagtcg cggtgttgca tttcacaccg
     2281 atgcggtgca ggcattcggc aaggtcgtca tcgacgctcg cactcagcca ttcgacctcc
     2341 tctcgatttc cggccacaag attggtgcgc ccaaggggat cggtgcgctg ttcattcgtc
     2401 gcggcaccgc gttcgagccg ttgatccgcg gcggctcgca ggatcgcggt cgcagagccg
     2461 gcaccgagaa tcttgcatac gtcgtcggtc ttgcgacggc cgccgagttg gctgtggctg
     2521 agcgtgagca gcactggaag gagacggagc acatgcgcga tcgcctgcag gcgctgctcc
     2581 tcgcggctat tcccgacgcg gtggtacaca gtcgcggcgc gcggcgcgct ccgcacgtac
     2641 tgaacatctc cgttcccggc acggacaacg agtcgatgct gatggcgctc gatctgcgcg
     2701 gcatcgcgtg ctctggtggc agtgcgtgcc agagcggaag cgtcacgccg agtcacgtgc
     2761 tgtcggcact gggcgtcgac cccgccctgg cgaatgcggc ggtgcggatg agtttcgggc
     2821 ccatcaatac cgaggcggac gtcgatcgtg tggctgaggt gttcccgaaa ctggtcgcaa
     2881 aagcccggtc gatggccgcg gcgtagctcg ggcgcgggga tgcacctgcg tcccatcgct
     2941 tagttttaca tcatgctacc gaaccgagtc cttgtcgcga tgtcgggcgg cgtggactct
     3001 tccgtcgccg ccgcgctcct tgtggagcgt gggtacgacg tcgtcggtgt caccatgaag
     3061 ctgttctcgg acgggtccga ggttccggat cgtccctgct gctcgctcga ttccgtcaac
     3121 gacgctcgtc gcgtttgcga gcggctcgga attccgcatt acgtactgaa catggagagc
     3181 cgcttcggcc acgacgtgat ggatgacttc gtcgccgagt acgttgcggg ccgcactccg
     3241 attccatgcg tgcgatgcaa cacgttcacc aagttccgcg acctgttgca cacggccgac
     3301 aacatcgatg ctcagtggat tgcgaccggc cactacgcgc gggtatccgg cggtgaattg
     3361 ctgcgcggaa gcgatgacgc gaaggatcag acctatttcc tctggggaat cgatcgcgcg
     3421 gttatatcgc gcatgattct tcccgtcggc gacatgacga agagtgagac gcgcgcgatc
     3481 gcgacgcgcc tcggcctgac gatggtcgcc aacaaggcgg acagtcagga gatctgtttc
     3541 gtacccgacg gtgattacgt gaaggtgatc gcgcagcgcg ctggcgccga ctcgcccgcg
     3601 ttgcagcgcg gcccgatcgt gcacagtgac ggccgcgtgc tcggtgagca cgatggctac
     3661 gcgcggttca cggtcggaca gaggcgcggt ctccctggcg gatttgcgga gccgctgttc
     3721 gtcgtggaaa tacggcccga ggatcgcgcc gtgatcgtcg gatcgcgcga tgagttgctt
     3781 ggcacgggcg tggctgcgac tgaagtcaac tggctcgtcg aggcgccgcc gctacccggc
     3841 gatgcggtgc aggtgcgcat ccgtcatcac tcgcctctca cgcatggcgt tgtgctgcgc
     3901 gcggaagacg gtgaagtcga gatcgcgctc gatgaagctg tcgtcgcaat atcgccgggg
     3961 cagtcgctgg tgatctacag cggggatcgg ctgctggggg gcgggtttat cgcgtcccca
     4021 cggcgggtgc gcgcagagct accgctgctg gccgtctagc agctggcagg gccgccgggc
     4081 aggaattagc gggcgagcta cgtttagtac ccatgcgccc cttgtcggcg attctgatcg
     4141 gtacagctct gctctcaccg gtacagtggg cgcaggcgca ggcgtatgca ttcagacagt
     4201 acggcgccga tgccggcgtc gaccctgcga ccgctctcgc tttcgattcc gatgggcagc
     4261 tcctgatcgg caccaacgat gggctgcttc gcctcgatgg gcgcgatgta accagggtcg
     4321 cgctggcggc gactcatgtc ggagtagtac gactggccgc tgg
//
LOCUS       DATIMD010000445         3797 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_178938, whole genome shotgun sequence.
ACCESSION   DATIMD010000445 DATIMD010000000
VERSION     DATIMD010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3797
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178938"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..558
                     /locus_tag="VLI40_09880"
     CDS             <1..558
                     /locus_tag="VLI40_09880"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682784.1"
                     /note="catalyzes the reaction of glycine with
                     5,10-methylenetetrahydrofolate to form L-serine and
                     tetrahydrofolate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HSU97529.1"
                     /translation="VLCKAEHAKAIDKAMFPGIQGGPLEHVIAAKAVALKEALDPSFR
                     TYCTQIIANAQTLAGALADRGMNIVSGGTDTHLMLVDLRNRGLTGKVLEQALDRAAIT
                     VNKNTVPKETQSPFVTSGVRIGTPAVTTRGMREPEMQQIAALIDRVAKAPDDATVSGE
                     VRAEVRALTDRFPLYPGSFAERDEA"
     gene            558..944
                     /locus_tag="VLI40_09885"
     CDS             558..944
                     /locus_tag="VLI40_09885"
                     /inference="COORDINATES: protein motif:HMM:TIGR04138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Minf_1886 family protein"
                     /protein_id="HSU97530.1"
                     /translation="MADLAFRDGVMEQIRQRESRYEEGAYLFVLAALEYSQAQLQVRR
                     HITGRELAVACRDLAIDRYGIMARVVLERWGIASTDDIGSVVFTLVDLGFLASQPTDT
                     REQFSDVYDFFEAFERRYPWNGKALV"
     gene            963..2456
                     /locus_tag="VLI40_09890"
     CDS             963..2456
                     /locus_tag="VLI40_09890"
                     /inference="COORDINATES: protein motif:HMM:TIGR00196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HSU97531.1"
                     /translation="MPVRVVDGEESVALDAAAIAGGVPSRALMRAAAFNAASVICAKF
                     PDQLRRGATILTGPGNNGGDGWALASALDAAGVRVQVREITLARTPDAVAERALASRL
                     IGTDSLSSGVVVDAMLGTGNTGDLRGAILNATHEVARARDHGATVIALDLPTGVNATH
                     GAGKESVTADLTISFGGCKRGSLISRAACGEIVVVEIGLGAPPANLPTLIDAAFVHDN
                     VPRIMPDAHKGTRKSVAVVAGGDNMGGAAIMAATGALRAGVGLVQVSTAASNVAPMHT
                     RIPEALVAPLAKASSTIQHWADAVLIGPGLGTDDATRDLIHGLMRDWRGPIVVDAGAL
                     SAYADDLSALREVLTGRPAIITPHPGEMSRLTGRDVKYVLDNRFDIGLDVSRKIDATV
                     LLKGTPTIVSSPDGTRYVIASGTAVLATGGSGDALGGIVATLLAQECVPGVAAACAAW
                     VHGRAAELTPGMRGYRLTDVLERLPQAWSLDGTRLQYPVLASLPALS"
     gene            2453..3403
                     /gene="thiL"
                     /locus_tag="VLI40_09895"
     CDS             2453..3403
                     /gene="thiL"
                     /locus_tag="VLI40_09895"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HSU97532.1"
                     /translation="MTHGGEIAFGPGEEFRFIRRLIRRFGSLAVGIGDDAALIHVPRD
                     NMLAMSTDTAVDNVHFRRDWLTLDEIGYRATTAAISDLAAMGANGLGILVALATPPES
                     RENLDALGDGIARAAVSAGVRIFGGDTARSAVLSLTVTAFGNTRDALRRDAARAGHHV
                     YVTGLLGGPGAAVSALTEGEPLPELWRERFANPHARLREARWAAGRGARAAIDISDGL
                     LADAAHVAAASNVHMTLDLDRIPVIQGVDPIAALQSGEEYELLLTSAIPLDCDAFRAR
                     FGIPLTGIGSVSDGEPGVVVISQGKQLEIEPRGSDHFRVA"
     gene            3403..>3797
                     /locus_tag="VLI40_09900"
     CDS             3403..>3797
                     /locus_tag="VLI40_09900"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSU97533.1"
                     /translation="MPLIRTLATMLVIGVLTIVFATVLILAALVGVPNRRGSIYDVLP
                     RTWARWTLWAGGVKVRVHGLEALPVGGTFIFICNHVSLFDILALVGWLPRNNFVAKAE
                     LFKIPVFGAGLRVLGTVPMERTNQKAAFGA"
BASE COUNT          663 a         1110 c         1297 g          727 t
ORIGIN      
        1 gttctgtgca aggccgagca cgcgaaggca atcgacaagg cgatgtttcc cgggatacag
       61 ggcggcccgc tggagcatgt catagccgcg aaggccgtcg cgctcaagga agcgctggac
      121 ccttcgttca ggacatattg cacgcagatc atcgcgaatg cgcagacgct tgctggtgcg
      181 ctggcggatc gcggaatgaa catcgtttcc ggtggtaccg atacgcatct catgctggtc
      241 gatctgcgca accgtggact caccggcaag gtgctcgaac aggcactgga tcgtgccgca
      301 atcacggtca acaagaacac cgttccaaag gagacgcagt cgccgtttgt gacgagcgga
      361 gtgcggatag gcacgcctgc ggtcaccacg cgtgggatgc gcgagcccga gatgcagcag
      421 atcgcggctc tgatcgatcg cgtcgcaaag gcaccggacg acgctacagt gtcgggcgaa
      481 gttcgcgccg aggtgcgcgc tctcaccgat cgctttccac tgtatccggg aagttttgca
      541 gaaagggatg aggcctgatg gcagatctcg catttcgcga tggcgtcatg gagcagattc
      601 ggcaacgcga atcgaggtat gaggaaggtg catatctgtt cgtcctcgcc gcactggaat
      661 attcgcaggc gcagctgcag gtgcgccgtc atattaccgg cagggaactc gccgtggcgt
      721 gtcgcgatct cgcgatcgac cgctatggaa tcatggcgcg tgtggtactc gagcgatggg
      781 gaatcgcctc caccgatgac attggatcgg tcgtgttcac gctggtggac ctgggttttc
      841 tcgcaagtca gcccactgac acgcgggagc agttcagcga cgtatacgac ttcttcgagg
      901 cgttcgagcg tcgctatccg tggaacggca aggcgctcgt ctgatccgcg tccgacgaat
      961 caatgccggt tcgcgtcgta gacggtgagg aatcagtcgc gctggacgcg gctgcgatag
     1021 caggaggagt tccatcgcgc gcactgatgc gcgctgctgc gttcaatgcg gcatccgtta
     1081 tctgcgcgaa gtttccggat cagctgcgac gcggcgcaac cattctcacc ggacccggca
     1141 acaacggtgg cgacggctgg gcgctcgcat cggcgctcga cgcggcaggc gtgagggtgc
     1201 aggtgcgcga gatcaccctg gcgcgaacgc cggatgcagt cgccgagcgc gcgctggcga
     1261 gcagactcat cggtacggat tcgctttcgt cgggcgttgt ggtcgatgcg atgctcggca
     1321 ctggcaacac cggcgatctt cgtggcgcga ttctgaacgc gacacacgag gtggcgcggg
     1381 ccagggacca cggcgccacg gtgatcgcgc tggatctgcc gaccggcgtg aatgcgacgc
     1441 acggcgcggg caaggaaagc gtgacggctg atctcacgat cagcttcggc ggttgcaaac
     1501 gcgggagcct tatctctcgt gcggcgtgcg gcgagattgt cgtcgtcgag atcgggctcg
     1561 gcgcgccgcc ggccaatctc cccacgttga tcgacgcggc atttgtgcac gacaacgttc
     1621 cgcgtatcat gccggacgcg cacaagggaa cgcgcaagag cgtcgccgta gttgcgggcg
     1681 gcgacaacat gggcggtgcg gcgatcatgg cggcgaccgg tgcgctcaga gccggcgttg
     1741 gtctggttca ggtgagcacc gcggcaagca atgtcgcgcc gatgcatacc cgtatccccg
     1801 aagcgctcgt cgctccgctc gcgaaggcgt cgtcgacgat tcagcactgg gccgatgccg
     1861 tactcatcgg tccgggcctc ggcaccgacg acgccacgcg tgatttgatc catggtctca
     1921 tgagagactg gcgtggcccg atcgtggtcg atgcaggcgc gctcagtgca tacgcggacg
     1981 acctgagcgc gctgcgcgaa gtgttgaccg gacgaccggc gatcatcacg ccgcatccgg
     2041 gcgagatgtc gcgccttacg ggccgcgacg tgaagtacgt tctggataac cgcttcgaca
     2101 tcgggttaga cgtatcaaga aaaattgatg cgacggtcct gctcaagggg acgccgacga
     2161 ttgtatccag tccggacggt acacgttacg tgattgcatc cggcacggca gtgctcgcca
     2221 cgggtggcag cggcgacgcg ctcggcggca ttgttgcgac gctgcttgct caggaatgcg
     2281 tgccgggagt tgcggcggca tgcgctgcgt gggtgcatgg acgtgccgcc gaattgacgc
     2341 ccggcatgcg gggatatcgc ctgaccgacg tactggagcg tttgccgcag gcctggtcgc
     2401 tcgatggtac gcggttgcag tatccggttc tcgcgtcgct gcccgcgctt tcgtgacgca
     2461 cggcggcgag attgcgttcg ggcccggcga agaattcaga ttcattcgcc gattgattcg
     2521 aagattcggt tcgctcgcgg ttggcattgg tgacgatgcg gctctgatcc acgttccgcg
     2581 cgacaatatg ctcgcgatga gcacggatac cgccgtcgac aacgtacact ttcgtcggga
     2641 ctggttgacg ctggatgaga tcggctatcg tgcgacgacg gctgcgatca gcgacctggc
     2701 ggcaatgggg gcgaatggcc tggggattct ggtcgcactt gcaacgccgc cggaatcgcg
     2761 agagaatctc gacgcacttg gcgacggaat agcgcgcgca gcggtctcgg ccggcgtccg
     2821 gatatttggc ggcgacactg cgcgaagcgc ggtgctgtcg ctcaccgtca ccgcgttcgg
     2881 aaatacgcgc gacgcgttgc gccgcgatgc tgcgcgtgca gggcatcacg tgtacgtaac
     2941 cggattactc ggcggccccg gtgccgcggt aagcgcgttg accgagggag aaccgctgcc
     3001 ggagttatgg cgcgagcggt tcgcgaaccc acatgcgcga ctgcgcgaag cgcgttgggc
     3061 cgccggtcgc ggcgcacgtg ccgcaatcga catctctgat ggattgctcg ccgatgccgc
     3121 gcatgttgct gcggcgagca atgtgcacat gactctggat ctcgatcgca ttccggttat
     3181 ccagggcgtc gatccgatcg ccgcgctgca gagcggggag gagtatgagc tgctgctcac
     3241 atcggcgatt ccacttgact gcgatgcgtt cagggcgcgg ttcggcatac cgctgacggg
     3301 gattggcagt gtgtccgatg gcgagccggg agttgtcgtg atatcacagg gcaagcagct
     3361 tgaaatcgag ccgcgcggct ccgatcactt tcgagtcgcc tgatgccgct gattcgcaca
     3421 cttgcgacga tgcttgtgat cggcgtgctc accattgtgt tcgcgaccgt cctgatcctg
     3481 gccgcgcttg tcggggtgcc caatcgtcgc ggcagtatct acgacgtgct gccgcgcacc
     3541 tgggcgcgct ggacactatg ggccggtggc gtcaaggtcc gggtgcacgg cctggaggcg
     3601 cttccggtcg gcggaacgtt catcttcatc tgcaaccacg tttcgctctt cgatatcctc
     3661 gcgctggtcg gttggttgcc gaggaataat ttcgtagcga aggcggagct attcaagatt
     3721 ccggtgttcg gagctggtct cagagtgctt ggcaccgtcc ctatggagcg gaccaatcag
     3781 aaggctgcat tcggggc
//
LOCUS       DATIMD010000446         1896 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4804214, whole genome shotgun sequence.
ACCESSION   DATIMD010000446 DATIMD010000000
VERSION     DATIMD010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1896
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4804214"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(160..>1896)
                     /locus_tag="VLI40_09905"
     CDS             complement(160..>1896)
                     /locus_tag="VLI40_09905"
                     /inference="COORDINATES: protein motif:HMM:NF024603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HSU97534.1"
                     /translation="QGRIYITEYETENKKRVRALLQSASEARTRGDNSAALALYRDAL
                     GLDPANVEATEGSAAAAAIAHERDAGVKRQQRLLLGHVNSGDLTMRDYNRALSSLEAD
                     PASLDTHDLQYRRLVDAVVAGELTIRSFVRSTELLDSETGEHSQPSGTPVPAVLASET
                     PPAATPSSTSGATQAAVVTSPQPSAQEPTSSAKNPSQAAKSHERPPSPMPRSSGSRWL
                     KAIGGLAAVVIAFFIFRPHPGPIPTPAPGVVDSATQPSATSRAAQRLADSIAAAQAVA
                     ANRTAAVTPVPGVESPGLSRGQATASAARESKKASDRTQQTITDPSRPLPLKPPTLEP
                     ANGSTSVSIEAQITLRFTDLAPGDEIDRASLLSGNIGLTNSGGGGLSIVFGGDANTVR
                     ITPAGKLAEDTRYFIDVQKAVRTKLGRSLQSPAHYTFFTVTVDSLYFYRLINPNRSVV
                     EGLTADSRFCRMEQEQSGGNQAWYFTKSQVPGYYIMHNAFGGAATGLEGAISPDPCRL
                     NAVANPPTPGMLWYFSPVTESSSSPGRYFLQNMNFRIGRSLALGANGPVMQPTDPRDP
                     QQWWMLQRQQRR"
BASE COUNT          354 a          555 c          594 g          393 t
ORIGIN      
        1 cgctccatat cccgcagcca ggccgcgcag cagtttgctc atcgcgctct cgtaacgatt
       61 ggttgagatc gttccatcgt tccggagtgg aagtgcaggg atcgtacccc tgccgacgag
      121 cgaccgccac caaattgatc gcgatgtgcc gtagttttgc taccgccgtt gttgtctctg
      181 caacatccac cactgttgtg gatcgcgagg atcagtcggt tgcatcactg gcccgttggc
      241 tccgagggcg agagatcgac caatacgaaa attcatgttt tgaaggaaat agcgtcccgg
      301 cgagctgcta gattcggtca ccggagagaa gtaccacaac atgcccggtg tcggaggatt
      361 agcgactgcg ttgagccgac acggatccgg cgatattgca ccctcgagtc cagtcgcggc
      421 gcccccgaac gcattgtgca tgatgtagta acctgggacc tgcgacttcg tgaaatacca
      481 agcctggttt cctccgcttt gctcctgctc catgcgacag aatctggagt cggccgtcag
      541 cccctcgacc acactgcggt ttggattgat cagtcgatag aaataaagag aatcgaccgt
      601 caccgtgaag aaggtgtagt gtgcggggga ttgcagagag cgacccagct ttgtgcggac
      661 cgctttctgg acatcaatga agtacctggt gtcttctgcg agcttgccgg ctggcgtgat
      721 gcgaacagta tttgcgtctc ctccgaagac aatcgaaaga ccgccaccgc ccgagttcgt
      781 gaggccgata ttaccagaaa gtagagaggc ccggtcaatt tcatcgcccg gcgcgaggtc
      841 ggtgaagcgc aacgtgattt gcgcctcgat cgaaaccgac gtcgagccgt tcgcaggttc
      901 caacgttggg ggtttgagcg gaagaggccg cgacgggtcg gtgattgttt gctgagtcct
      961 atcagatgcc ttcttcgatt ccctggcagc ggacgccgtg gcttgtccac gagacagtcc
     1021 cgggctctcg acgcctggca cgggcgtaac cgccgctgtc cgattggcgg caaccgcctg
     1081 agccgccgcg attgaatctg ccaaacgttg cgcggcccgc gaggttgcgc tcggttgcgt
     1141 cgcgctgtcg accacgccag gcgctggagt cggtatgggc cctggatgtg ggcggaagat
     1201 aaagaacgca atcaccaccg ccgctaatcc gccgatcgcc ttgagccatc gtgagccgct
     1261 tgatcgcggc attggcgacg gaggcctctc gtgcgatttc gcagcttgag atgggttctt
     1321 cgccgaggac gttggctcct gtgccgacgg ctgcggtgaa gtgacgacag cagcctgcgt
     1381 cgcaccactc gttgacgatg gagttgcggc aggtggagtt tcggacgcta agaccgccgg
     1441 taccggcgtt cccgatggct gtgaatgctc gccggtctcg ctgtcgagca gctccgtcga
     1501 tcgaacgaat gatcggatcg tgagctctcc ggcaacgact gcgtcgacca accggcggta
     1561 ctgaagatca tgcgtgtcga gcgaggcggg atccgcctcg agcgatgaca acgcgcgatt
     1621 gtagtcgcgc atcgtgagat cgccgctgtt cacgtggccg agcaagagac gctgttgacg
     1681 tttgactcct gcgtcgcgct cgtgcgcaat ggccgccgca gcagcagaac cctcagtcgc
     1741 ctcgacgttc gcaggatcga ggccgagtgc gtcgcgatag agcgcaagcg cggcggagtt
     1801 gtcgccgcgc gtccgcgcct cggacgcgga ctgtagcaac gcacgaacgc gtttcttgtt
     1861 ctccgtctcg tactcggtga tgtatatcct tccctg
//
LOCUS       DATIMD010000447         6133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5668105, whole genome shotgun sequence.
ACCESSION   DATIMD010000447 DATIMD010000000
VERSION     DATIMD010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6133
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5668105"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..1309
                     /locus_tag="VLI40_09910"
     CDS             44..1309
                     /locus_tag="VLI40_09910"
                     /inference="COORDINATES: protein motif:HMM:NF014774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heterodisulfide reductase-related iron-sulfur
                     binding cluster"
                     /protein_id="HSU97535.1"
                     /translation="MTQPTRPPCADTPLAQEQAGLDACVHCGFCLQACPTYLALEDEN
                     DSPRGRIVLMRALADGQLPPSDPDLREHIDRCLGCRACETACPSGVPYGHLLEATRAT
                     LRGGQAPTAASRALLRVFAHRPLMRAAMAFARLLAATPIPTLLMKLPGRMGFAMAMLA
                     STDFPLERGKYRAEGDGRNGSAALLLGCVMEGLFTATNRATERVLTRNDYRMTAAPGQ
                     GCCGALHAHAGDLEAARRLARRNIVAFERSGAQYVVANAAGCGAMMKEYAHLLSGDPK
                     WADRAREISSRVRDVSELLAAVGPRSGGVIPFTVAYDAPCHLQHAQRVTTAPIAVLEA
                     IPGVQLVPLDESDQCCGSAGIYNLIEPETSDAVLARKLDRIGASHAALVATGNPGCLM
                     QIGAGLLRSDMRARAVHPIDLLDASYAAD"
     gene            1287..2270
                     /locus_tag="VLI40_09915"
     CDS             1287..2270
                     /locus_tag="VLI40_09915"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97536.1"
                     /translation="MPPTLLIDRSDRARIELSGAHAVATLNGLVTNDVAALKAGHGQY
                     AAALTAKGKIVADMILLMLDDRIQVHASPASAPGLRAMFTKFVNPRFATLTDVTDITG
                     DITLVGDGSAELIARASGGSVDAETLSALPHFSFVAATIGGAPVMVVHLPPIGAGNEC
                     VYSAILKRDALEDVRTALRGAGAVDAGAEALDTLRVESGFPEWGVDMDENTLPQEANL
                     DDMHAVSYTKGCYIGQETVARIHFRGHVNRSLRRLRFLNDVMPPRGAVLQDSEHRGIG
                     DVRSTAKSERDGAIGIGMVRREIDDGQSIDVHWEGGATTAIVEGKAKGAIE"
     gene            complement(2301..2528)
                     /locus_tag="VLI40_09920"
     CDS             complement(2301..2528)
                     /locus_tag="VLI40_09920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97537.1"
                     /translation="MKRLALVAVALLAVAACSKKQEAATDTTMPAAAATSTDTAMKMM
                     DSSKSMVDTAKKMLDSGKTLADSAKNAMKKP"
     gene            2831..4240
                     /locus_tag="VLI40_09925"
     CDS             2831..4240
                     /locus_tag="VLI40_09925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase"
                     /protein_id="HSU97538.1"
                     /translation="MVNRTVKDELRSNLLDRLAKGGQLFHGVLGYEDTVMPQIANAVL
                     SRHNFILLGLRGQAKSRILRALTTLLDEVVPIVAGSEVNDDPFHPISKFARQLIAEAG
                     DDTPIAWADRDSRYVEKLATPDVTIADIIGDVDPIKAARGGHLLSDELTIHYGMLPRA
                     NRGIFALNELPDLSGKVQVGLFNIMQEGDVQIKGYPVRLPLDLLLVFSANPEDYTARG
                     KIITPLKDRIGSEIVTHYPETVEIGMAITRQEAWADRGVMQVRVPDFMEEVIERIAFE
                     ARTDKRIDRRSGVSQRMPITVLENVISNAERRSVETGESEAVPRIADVYSALPAITGK
                     IELEYEGEIVGGPTIARELIRRAADATFRERAGLVDTDEIVMWFDAGGALQVSDDVSA
                     ASVVKGFESVPTLIDTVEEAGLAGRSDIPLVAAACELVLEALVARRKISRSDEGRYGR
                     AVSEKRRRPGEDYFGGLSA"
     gene            4304..4933
                     /locus_tag="VLI40_09930"
     CDS             4304..4933
                     /locus_tag="VLI40_09930"
                     /inference="COORDINATES: protein motif:HMM:NF024587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidylate kinase-like family protein"
                     /protein_id="HSU97539.1"
                     /translation="MPIITVSRMYCSGGSNVAARVAEAMGWSLLDNTVIDEVAARTGL
                     SASEVAAREERRPSLAERVATAMAMSTQEMMSPIAAAQLPPTEQRLLDVTHAVIEEAA
                     SRDSVVIVGRGAQMMLGSRGDVFGVFCYGPLEALTRSCMQRDGLDHAHAEKRVLHVNQ
                     ERAAWVKSNWGRDWSAVDNYHLCVNTDALGVDGAADAIVRAAHVYFGRG"
     gene            complement(5130..5891)
                     /locus_tag="VLI40_09935"
     CDS             complement(5130..5891)
                     /locus_tag="VLI40_09935"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HSU97540.1"
                     /translation="MPRPYILAETNWKTVSSTEYDVAVLPWGATEAHNYHLPYATDVM
                     ECDAVAAESARRAWEAGAKVIVLPTVPFGVNTGQLDIELCLNMNPSTQAALLGDLVSA
                     LEGQGIQKLVVLNGHGGNDFKQMIRELQPRTSVFLCSLNWYTCVDPAPYFDEPGDHAG
                     ELETSVMQHIAPDLVLPLSEAGDGSQRKPSIAGLRERWVWAPRPWTRVSKDTGTGNPA
                     HATPERGERFFEAVTARISGFLIELAAADMDRLYE"
BASE COUNT         1112 a         1796 c         2063 g         1162 t
ORIGIN      
        1 atccgcacgg tgtacttaat cctggaatca tgggaaccga gtcatgacac agccgacgag
       61 gccgccgtgc gccgacacgc cgctcgcgca ggagcaggcc gggctcgacg cgtgcgtgca
      121 ctgcggattc tgtctccagg cgtgtcccac gtatctggcg ctggaggacg agaacgactc
      181 tccgcgcggc cgaatcgtgc tgatgcgtgc gctggcagat ggacagttgc cgccgagcga
      241 tccggatctg cgggagcata tcgatcgctg tctcggatgt cgcgcgtgcg agaccgcgtg
      301 tccgtcggga gtgccgtacg gtcatctgct ggaagcaacg cgtgcgacgt tgcgcggcgg
      361 gcaggctccg acagccgctt cgcgcgcgct gctccgggtg ttcgcgcacc ggccgttgat
      421 gcgcgcggcg atggcgttcg cgcgcctgct ggccgccacg ccgatcccga cgctgctgat
      481 gaagctgccc ggacggatgg gctttgccat ggcgatgctt gcatccaccg actttccgct
      541 ggagcgcggg aagtatcgcg ccgagggtga cggccggaac ggcagcgcgg cactgctgct
      601 gggatgtgtg atggagggac tgttcacggc gacgaaccgg gcaacggagc gagtgctcac
      661 gcgcaatgat tatcgcatga cggctgcacc gggacagggc tgttgcggag cgctgcacgc
      721 gcatgctggt gatctcgagg cggcacgcag actggcccgg cgcaacatcg tcgcgttcga
      781 gcgctcgggc gcacagtacg tggttgcgaa cgcggcaggc tgcggcgcga tgatgaagga
      841 atacgcgcat ctgttgagcg gcgatcccaa gtgggccgat cgcgcacgtg agatatcatc
      901 gcgtgtgcgc gatgtgagcg agctgctggc cgcggttggt ccgcgctccg gtggagtgat
      961 cccgttcacc gttgcgtacg acgcaccgtg tcatctgcag catgcgcagc gcgtgacgac
     1021 ggcacccatt gcagtgttgg aggcgattcc cggcgtgcag ctggtaccgc tggacgaatc
     1081 ggatcagtgt tgcggcagcg ccgggatcta caatctgatc gagccggaaa cgtcggacgc
     1141 ggtgctggcg cgaaagctgg atcggatcgg cgcgtcgcat gctgcgcttg ttgctaccgg
     1201 caacccgggt tgtctgatgc agatcggcgc gggattgctt cggtccgaca tgagagcgcg
     1261 cgcggtgcat cctatagatt tactggatgc ctcctacgct gctgattgac aggtccgacc
     1321 gcgcgcgaat cgagctttcc ggagctcacg cggtcgcaac tctcaatggt ctcgtcacga
     1381 acgatgtcgc cgcactgaaa gccggccacg gtcagtacgc ggcagcgctc accgccaagg
     1441 gcaagatcgt cgcggatatg atattgctga tgctggacga caggatccag gtgcacgcgt
     1501 cgcccgcatc cgctccggga ttgcgcgcga tgttcacaaa gttcgtgaat ccgcgtttcg
     1561 cgactctcac ggatgttacc gatatcactg gcgacatcac gctcgtcggt gatggttcgg
     1621 ccgagctgat cgcacgtgct tccggtggaa gtgttgatgc agagacgctg tcggcactgc
     1681 cgcatttctc tttcgtcgca gcaacgatcg gcggcgcgcc tgtgatggtc gttcatctgc
     1741 caccgatcgg tgccggcaac gagtgcgtct actccgcgat tctcaagcgc gacgcgctgg
     1801 aagatgtgcg gacggcgcta cgcggtgccg gtgcggtcga cgccggcgcg gaggcgctgg
     1861 atacattgcg cgtcgagagt ggatttcccg agtggggcgt cgacatggat gagaacacgc
     1921 ttccacagga agcaaatctc gacgacatgc acgcggtgtc gtatacgaag ggatgctaca
     1981 tcgggcagga gaccgtggcg cgcatccact ttcgcggaca cgtgaatcgc agtctgcgca
     2041 ggctcagatt cctgaacgat gtgatgccgc cgcgtggagc ggtgcttcag gattcggagc
     2101 atcgtggcat cggcgacgtg cgcagcacgg cgaagagcga gcgtgacggg gcgatcggga
     2161 taggcatggt gcggcgcgag atcgacgatg ggcagtcgat cgatgtgcac tgggaaggcg
     2221 gcgctacgac ggcgatagta gagggaaaag caaaaggcgc gatcgagtga tcgcgccttt
     2281 tgctttgtga gctgtggaga ttacggcttc ttcattgcgt tctttgctga atcggcgagt
     2341 gtcttgccgg aatccagcat cttcttggca gtgtcaacca tcgacttgga gctatccatc
     2401 atcttcattg cagtgtcagt gcttgttgct gctgctgccg gcatggtggt gtcggtagcg
     2461 gcctcttgct tctttgaaca agctgctact gcgagtaggg cgacggcgac gagggccagg
     2521 cgcttcatac gagaatctcc ttggagaggt tcagagggtg atcgcccggg tccgtgcacg
     2581 cagtcgcgat gcccggatgt ggcgcggggt cgaatctatg tctaccagaa tcggtgtcaa
     2641 gtaccacgac ccccgagcta aattacgtcg tacatgaggg tttcgcgact ggttgacatt
     2701 tatccggatg cctgactagc aataatcgcg ctacgccgcc gacaacccgc cgaactgaat
     2761 cgagagtagt gtgcctcaac ttccacaaac atttggtgct ctgaagcgat cggcttatgc
     2821 cgcgccgggc atggtaaaca ggacagtgaa ggacgagctg cgcagcaatc tgctggaccg
     2881 gctcgccaag ggtggtcagc tgtttcacgg cgtcctcggg tacgaggaca ccgtaatgcc
     2941 gcagatcgcc aacgcggtgt tgagccgcca caacttcatt ctcctcggac ttcgcggaca
     3001 ggcaaagtcg cgcatcctgc gagcgctcac gacgctgctc gacgaggtgg tgccaattgt
     3061 cgcgggcagc gaggtgaatg acgatccgtt tcacccgata tccaaattcg cccgccagct
     3121 gatcgcggag gcgggtgacg acaccccgat cgcgtgggcc gaccgcgaca gccgctatgt
     3181 ggaaaaactc gcgacgccgg atgtcaccat tgccgacatc atcggagacg tggatccgat
     3241 caaggcagcc cgcggtggtc atctcctctc cgacgagctg acgatccact acggaatgct
     3301 gccgcgcgcc aatcgcggaa tcttcgcgct caacgagctg ccggatctct cgggcaaggt
     3361 gcaggtcgga ttgttcaaca tcatgcagga aggcgacgtt cagatcaaag gctatcctgt
     3421 gcggctgccg ctggatctgt tgctggtgtt ctccgccaac cccgaggatt acacggcgcg
     3481 tggcaagatc atcacgccgc tcaaggacag aatcgggagc gagatagtga cgcactatcc
     3541 cgaaacggtc gagatcggga tggcgatcac gcgtcaggag gcgtgggcgg accgcggcgt
     3601 gatgcaggtg cgtgtgccgg atttcatgga ggaagtgatc gagcgcatcg cgttcgaagc
     3661 tcgtacggac aaacgcatcg accggcgctc cggcgtgtct cagcgcatgc cgatcacggt
     3721 tctcgagaac gtgatatcga acgccgagcg gcgctcggtc gaaaccggcg aatcggaagc
     3781 ggtgccgagg atcgccgacg tgtactcggc gctgcctgcg attacaggca agatcgagct
     3841 ggagtacgag ggcgagatcg ttggtggccc gaccattgcc cgtgagctga tcaggcgtgc
     3901 cgcggatgcg acgttccgcg agcgcgcggg tctcgtcgac acggacgaga tcgtgatgtg
     3961 gttcgacgct ggtggcgcgc tgcaggtgtc tgatgacgtc tctgccgcgt cggtggtgaa
     4021 gggcttcgag agcgtgccga cgctgatcga cacagtcgag gaagcaggac tggctggccg
     4081 gtcggatatt ccgctggtcg ccgcggcgtg cgagcttgtg ctcgaagccc tggtggccag
     4141 gcgcaagatc tcgcgctccg acgaggggcg ttatgggcgc gcggtgagtg agaagcgccg
     4201 gcgtccgggc gaggattatt tcggcggact ttcagcgtag ccttcagggt agactttcgg
     4261 cgtagacttt ccgtccagct tttcagccca gcgaggtttc cgtatgccga tcatcactgt
     4321 ctcgcgcatg tactgctcgg gtggctcgaa cgtcgccgcg cgagtggcgg aagcgatggg
     4381 atggtcgctg ctggacaaca ccgtgatcga cgaggttgct gcccgcacgg gattgagcgc
     4441 ctcggaggtc gcggcgcggg aagagaggcg cccgtcgctg gctgagcggg tcgccacggc
     4501 gatggcgatg agcactcagg agatgatgtc gccgattgcc gcggcgcagc tgccgcccac
     4561 ggagcagcgc cttctcgacg ttacccacgc cgtgatcgag gaggccgcga gccgcgactc
     4621 ggtggtgata gtggggcgtg gcgcgcagat gatgctgggc tcgcgcggag acgtctttgg
     4681 agtgttctgc tacggccctc tggaagcgct cacacgcagt tgcatgcaac gggacggcct
     4741 ggaccatgcc cacgccgaga aacgcgttct acatgtcaac caggaacgcg cagcctgggt
     4801 caagtccaac tggggacgcg actggagcgc ggtggacaac taccatctct gcgtcaacac
     4861 cgatgcgctg ggcgtggacg gcgccgcgga cgcgatcgtg agggcggcac acgtgtactt
     4921 cgggcgcggc tgagagggcg ccagatggtc gtcattcccg cgaaagctgg ctcagagact
     4981 cgtcattccc gcgaaagcgg gaatccatct gttgccgacc atcttcctgc tgccatcgca
     5041 cttgaagatc gataacatgg attcccgctt tcgcgggaat gacgaccatc agatgggatt
     5101 cccgcgttcg cgggaatgac gaattcaggt cactcgtaca gtctgtccat gtccgcggct
     5161 gcgagctcga tcagaaagcc tgatatccgg gcggtcaccg cctcgaaaaa ccgctcgccg
     5221 cgctccggag tcgcatgagc gggattgccg gtccccgtgt ctttcgagac gcgagtccac
     5281 gggcgcgggg cccagaccca tcgctcgcgc agtcctgcaa tcgagggctt tctctgactt
     5341 ccgtcaccgg cctcggagag cggtaacacc agatccggcg cgatgtgctg catcacgctc
     5401 gtttcgagct cgccggcatg atcgcccggc tcgtcgaaat acggtgccgg atcgacgcac
     5461 gtgtaccagt tgagcgagca gaggaagacg ctggtcctgg gctgcagctc gcggatcatc
     5521 tgcttgaagt cgttgccgcc atgtccgttg aggacgacga gcttctgtat cccctgccct
     5581 tcgagcgcac tcaccagatc tcccagcaac gcggcctgag tgctcggatt catgttgagg
     5641 cagagctcga tgtcgagctg cccggtgttc acgccaaacg gaacggtcgg cagcacgatg
     5701 accttcgcgc cggcttccca cgctcgacgc gccgactcgg cggcgactgc gtcgcactcc
     5761 atcacgtcgg ttgcgtaggg cagatggtaa ttgtgagctt cggtcgcgcc ccacggaagc
     5821 acggcaacgt cgtactccgt ggaggacacg gtcttccagt tggtctcggc gaggatgtag
     5881 ggacggggca ttctggaaat tacatgagaa gcgccgaaat cactcggact gcaggtggct
     5941 cgggctgtcg cccttcaggt gcgccgaatc tctacaggct cgtaatggaa cacgaaatag
     6001 ttgaaagcct gttccgtacc ccacggcgtg cgatgcatct cgtggctgct ggcgacgagc
     6061 cgacagtcgc tgccgagctc gctcttcagc gcgtccgccg agtaccggac cgtgtccagt
     6121 ccactacaac gaa
//
LOCUS       DATIMD010000448         4961 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4804988, whole genome shotgun sequence.
ACCESSION   DATIMD010000448 DATIMD010000000
VERSION     DATIMD010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4961)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4961
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4804988"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1106
                     /locus_tag="VLI40_09940"
     CDS             <1..1106
                     /locus_tag="VLI40_09940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97541.1"
                     /translation="GRLGLPATASAADSDRAARLLVEIQEHRDDTARTRGAIDSLETM
                     GVHVRGMMGGGQARGGPSQCHDITVYPSVGLAAGACSGYGLLLDIKDPTHPVRIQAVA
                     DSNFSFWHSATFNNDATSLLYTDEWGGGTQPKCRASDPIDWGADALFTLRNRQLKHVG
                     YFKMPAAQTATENCVAHNGGLVPVPGRDIMVQGWYQGGVSVFDFTDPAHPKEIAYFDR
                     GPIDASKLVIGGYWAGYYYNGYIYGSEIARGLDVFKLTPTADLTQNEIDAANLVRFDR
                     LNPQSQPKLVWPAAFPVALAYVDQLVRDNGLPAARTTAITTALKSAEQMSGAKRSAAL
                     RTLAGQLDHDATSASDAKRVRALAAVVQGLETK"
     gene            1282..1893
                     /locus_tag="VLI40_09945"
     CDS             1282..1893
                     /locus_tag="VLI40_09945"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSU97542.1"
                     /translation="MANLIRLAMPSDGPALADIYRPAVTDSATSFELDPPDGATMAQR
                     VAHVMGRTPWLVFQRDGIVLGYAYAGIHRERPAYQWSVEVSAYVHRDAQRLGVARSLY
                     TSLFAALVVQGFRNAYAGITLPNEASVGFHTAMGFTPVGVYRGIGYKHGDWHDVAWFE
                     RSLAPRDASPPVPRPLRECTDDATFLAAIGSALASGQAGHHQG"
     gene            1929..2432
                     /locus_tag="VLI40_09950"
     CDS             1929..2432
                     /locus_tag="VLI40_09950"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU97543.1"
                     /translation="MAITQKISPCLWFADEAEEAAQFYIGIFKNSRITATTRYSAVGF
                     EAHHRPPGSVMTVVFELDGQALTALNGGPVFKFNEAVSFQVNCTTQDEINYYWAKLSA
                     GGDPAAQQCGWLKDRYGLSWQIVPSIMDELLQDENSPGTQRVMEAVLQMKKIDIAQLL
                     RARDGAA"
     gene            complement(2511..2990)
                     /locus_tag="VLI40_09955"
     CDS             complement(2511..2990)
                     /locus_tag="VLI40_09955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSU97544.1"
                     /translation="MSSSSSSSVVITPEQLLEDWQGHRRLTRRMIDAFPDESLFTYSI
                     GGMRPFSALMMEVIKMAVPILRGEITGEWTSDDPPDATTRAELLDLWDRTTADIDRMW
                     PDIPPRRFQEVDTAFGQWTMPGYAMFLYAIDNEIHHRGQGYVYLRSLGIEPPPFYAR"
     gene            complement(3071..4261)
                     /locus_tag="VLI40_09960"
     CDS             complement(3071..4261)
                     /locus_tag="VLI40_09960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97545.1"
                     /translation="MPSPVSARRVGEWALRVISLAVLVVILMRAWGPSSRSARTENAG
                     QGSIAASLPRWSIAGPARIHLALDSVLPHGQRDWLAAIERAGTNVTWNSTRITPLALT
                     LTRMPDPSATYELSASAPRDSVIVVRDAVGVMDSVKAGNNGIRAAIPGVTSRAGISVG
                     GSNAWANAPDTTVFKRLLVEGAASWETKFTIAALAERGWKVDAVTHVAPGVDVREGSP
                     VLPDTSRYAAVIAVDSTAALVSRGAGSFVRSGGGLITLHGANTVGPSGATSVVLEHRS
                     DGEVRASRVGAGRVIRVGYKDLWRQRMSGDDTVPDPVAAHRAWLARAVASVAYAPRLA
                     VAVDSASDPAPLADMVDRLGARSGSADAPSPMQSEVPSSVLFGILLVSLLLELASRRL
                     RGAR"
     gene            complement(4245..>4961)
                     /locus_tag="VLI40_09965"
     CDS             complement(4245..>4961)
                     /locus_tag="VLI40_09965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4159 domain-containing protein"
                     /protein_id="HSU97546.1"
                     /translation="QGHDTVARTRATRVAGGPTRWKCWRTVERIVERETVTRFVFCTG
                     QYDSGDWDSAPLVPANLIDSIAQYTSIAVAPSGVNVALASDAILDYPFVYITGHLPVR
                     FSAAERRNIRKLTERGGMIFVDDHNHDIDGVFHKTALEEITIALSKPVDIPNDHELYR
                     SFFKFADGPPTTSQELNGWGDNLVHKNLQGVMQDGRISLLYSSKDYSSEWNYHPESKR
                     FNAVDNTRFGVNIIVYALTR"
BASE COUNT         1002 a         1550 c         1482 g          927 t
ORIGIN      
        1 tcgggcggtt gggacttccg gcaacagcaa gtgcagccga ttcggatcgc gcggcacggc
       61 tgctcgtcga gattcaggag catcgcgacg acaccgcacg cactcgcggt gcaatcgact
      121 cgctggagac gatgggcgta catgtgcgcg ggatgatggg cggcggccag gcgcgtggcg
      181 gcccgtcaca gtgccatgac attaccgtgt atccgagcgt cgggctcgct gctggtgcat
      241 gctccggcta cggactcctg ctcgacatca aggatccgac gcacccggtc cgcatacagg
      301 ctgttgcaga ttccaacttc tcgttctggc actccgccac gttcaacaac gacgccacga
      361 gcctgctcta cactgacgag tggggtggtg gtacacagcc caagtgccgc gcaagtgatc
      421 caatcgactg gggtgcagat gccctgttca cgcttcgcaa caggcagctc aagcacgtcg
      481 gctatttcaa gatgccagcc gcgcagaccg caacggagaa ctgcgttgca cacaacggtg
      541 ggctggtccc ggtgccaggc cgcgacatca tggttcaggg atggtaccag ggtggtgtat
      601 cggtcttcga cttcaccgat cctgcacacc cgaaggagat cgcgtacttc gatcgtggac
      661 cgatcgacgc atccaagctc gtaatcggcg gatactgggc cggttactac tacaacggct
      721 acatctacgg ctcggagatc gcgcgcggac tcgacgtgtt caagctgacg ccgaccgccg
      781 atctcacgca gaacgagatc gacgccgcaa atctcgtacg gttcgatcgc ttgaacccgc
      841 agagtcagcc caagctcgtg tggccggctg cattcccggt ggcgctcgcg tatgtcgatc
      901 agctcgtgcg tgacaatgga ctcccggcag cgcgcactac ggcgatcacg actgcactca
      961 agagtgcgga gcagatgagc ggcgcgaagc gctctgccgc gctcaggaca ctcgccggcc
     1021 aactcgacca cgacgcgacc agtgcaagcg acgcaaaacg cgtccgggca cttgcggccg
     1081 tcgtccaggg attggaaacg aagtagctct gcagtcgacc gcagttggcc gattgtatct
     1141 gacaacacgt cgcaacatgt gacaacgggc gcgcctttcg gcgcgcccgt tttgcgttcg
     1201 gatgtcccgg gcgcctcccg aaccgaactg ccaggattca ctggactgta gttaccgaga
     1261 cgcctaactt tttgtgtatc gatggctaat ctcattcgcc tcgcgatgcc gtcagacggc
     1321 cccgcactgg ccgatatcta tcggcctgca gtaaccgact cggcgacttc gttcgagctg
     1381 gatccgccag acggcgcgac gatggcccag cgcgttgcgc acgtcatggg gcgcacgccg
     1441 tggttggtat tccagcgcga cggtattgtg ctcggatatg catacgctgg catccatcgc
     1501 gaacgccccg cctaccaatg gtcggtcgaa gtatctgcat acgtgcatcg tgacgcgcag
     1561 cggctcggtg tggcgcgttc gctctatacg tctctgttcg cggcactcgt cgtgcaggga
     1621 tttcgcaacg cttacgccgg tatcacgctg ccaaatgagg cgagcgtcgg tttccacacc
     1681 gcaatgggat ttacgcctgt gggagtctat cgcggcatag gatacaagca cggtgactgg
     1741 cacgacgtcg cgtggttcga gcggtctctc gcgccgcgtg acgcatcgcc gcctgtaccg
     1801 cgaccgctcc gtgaatgcac ggatgacgcg acgttcctcg ccgcaatcgg ctcggcactt
     1861 gcatccggcc aggctggtca ccaccagggc tgatcgcaca gcgaacgttc aacacaagga
     1921 gcatgatcgt ggcgataact cagaaaatca gcccgtgcct gtggttcgcc gatgaagccg
     1981 aagaagccgc gcaattctac atcggaatct tcaagaattc gcggataacc gcgaccactc
     2041 gatacagtgc agtggggttc gaagcgcacc accggccgcc aggatcggtg atgaccgtgg
     2101 tgttcgagct ggatggtcag gccctcaccg cgctgaatgg tgggcccgtc ttcaagttca
     2161 acgaggcggt ttcgttccag gtgaattgca cgacgcagga tgaaatcaat tactactggg
     2221 caaagctgtc agcaggaggc gatccagcgg ctcagcagtg cggctggctc aaggacaggt
     2281 acggcctctc atggcagatc gtaccgagca tcatggatga gttgcttcag gacgagaact
     2341 cgccgggaac gcagcgcgtg atggaagcgg tgctgcagat gaaaaagatc gatatcgcac
     2401 agctcctccg agctcgcgac ggagctgcat gacgcaggcg tatcagtcca gcttgggaca
     2461 gcggacctcg tcgtgaccgt ttggagcagc agcacgcgat caaacgcccg tcatcgcgcg
     2521 tagaacggcg gcggctctat ccccagggag cgaagataga cgtagccctg gccgcggtga
     2581 tgaatctcat tgtctatagc gtacagaaac atcgcgtagc ccggcatggt ccactggccg
     2641 aacgctgtat cgacttcctg aaaacggcgc ggcggaatgt caggccacat ccgatcgatg
     2701 tctgccgtcg tcctgtccca tagatccagc agctccgccc tcgtagtcgc atccggcgga
     2761 tcgtccgacg tccattcccc tgtgatctcg ccgcgcagga tgggtactgc catcttgatc
     2821 acttccatca tgagcgccga gaaggggcgc attccgccga ttgaataggt gaacagcgac
     2881 tcatcaggaa acgcgtcgat catacggcgc gtaagcctgc ggtgtccctg ccagtcttcc
     2941 aggagctgtt cgggagttat cactacgcta ctgctggacg atgatgacat gttgagctcg
     3001 cgcgaagggt aagcggatga ctcggtaaat taggggcgcg atctggatcg tgccatgatt
     3061 gaggctgtcg ttacctcgcc ccgcgcagtc gccgcgaagc cagctccagc aacagtgaga
     3121 ccagcaggat tccgaacaac acgctcgatg ggacctcgct ctgcattggc gacggtgcat
     3181 ccgccgaacc ggagcgcgcg cccaatcgat caaccatatc tgcgagcggc gcaggatcac
     3241 tggccgaatc cacagcaacg gcgaggcgcg gtgcgtacgc aaccgacgcg acagctcgcg
     3301 cgagccatgc acgatgcgca gcaacgggat cgggcacagt atcgtcgccc gacattcgtt
     3361 gacgccacag atccttgtaa cccacgcgaa tcactcgtcc ggcaccaaca cgggaagcgc
     3421 gcacttcccc gtcggacctg tgttccagta caacggatgt cgcaccgctc ggacccactg
     3481 tatttgcacc atgcaacgtg atgagtccgc ccccactccg cacgaacgat ccggcgccac
     3541 gcgatacaag cgcagcagta ctgtccacgg caatgacggc ggcgtagcgc gatgtatcgg
     3601 gaagcaccgg actgccttca cgcacatcca caccaggcgc gacatgagtc accgcgtcga
     3661 ccttccatcc gcgctccgcc agtgctgcga tcgtgaactt tgtctcccag ctggccgcgc
     3721 cttcgacgag cagccgcttg aaaaccgtcg tgtctggagc gttggcccac gcattcgagc
     3781 caccaacaga tatccctgcg cgactcgtga cgccgggaat cgccgccctg atcccgttgt
     3841 tccccgcttt cacactgtcc atcacaccaa cagcatcgcg cacgacgatc acactatccc
     3901 gcggtgctga cgccgagagc tcgtacgtag cggatggatc gggcatgcgt gtgagagtga
     3961 gcgcgagcgg agttatcctc gtcgagttcc atgtaacatt ggtgccggca cgctcgatcg
     4021 cggcgagcca gtcgcgctga ccatgcggaa gtaccgaatc gagcgcgaga tgaatccgtg
     4081 ccggccccgc gatgctccat ctcggtagcg aggcagcgat gcttccctgc ccggcattct
     4141 ctgtacgagc cgatcgtgac gacggtcccc acgcgcgcat gaggatcacg accagcaccg
     4201 caaggctgat cacgcgcagc gcccactcgc caacgcggcg cgcgctaacg ggtgagggca
     4261 tacacgatta tgttgacgcc gaatctggta ttgtcgacgg cgttgaagcg tttgctctcg
     4321 ggatggtagt tccactccga gctgtaatcc ttgctgctgt acagaagact gatacgaccg
     4381 tcctgcatca caccctgaag attcttgtgc acgaggttgt cgccccagcc attcaactcc
     4441 tggctcgtcg tgggtggccc atcggcgaat ttgaagaagg agcgatacag ctcgtgatcg
     4501 ttgggaatgt cgaccggttt ggaaagggcg atggttatct cttccagggc ggttttgtga
     4561 aacactccgt caatgtcgtg attgtggtca tccacgaaga tcatcccgcc gcgttccgtc
     4621 aacttcctga tattgcggcg ctcagccgcc gagaagcgta ccggtagatg tccggtgatg
     4681 taaacgaacg gataatccag aatcgcatcc gacgcgagcg cgacgttcac gccactcggc
     4741 gcaacggcaa tgctcgtgta ctgcgcgatc gaatcgatga gattggccgg aacgagcggc
     4801 gccgaatccc agtcaccgga atcgtactgc cccgtgcaga agacaaatcg ggtcacggtt
     4861 tcccgctcca cgatccgctc cacggtacgc cagcatttcc agcgcgtggg gcccccagca
     4921 acgcgcgtcg cgcgcgtacg agcgacggtg tcatgtcctt g
//
LOCUS       DATIMD010000449         2430 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4805033, whole genome shotgun sequence.
ACCESSION   DATIMD010000449 DATIMD010000000
VERSION     DATIMD010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4805033"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            27..806
                     /locus_tag="VLI40_09970"
     CDS             27..806
                     /locus_tag="VLI40_09970"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU97547.1"
                     /translation="MTNTNERGILDLKGRRALVTGASRGIGAATARLLAAAGADVMIG
                     YRTRRDDANAVAADAVACGVRAAVHAADVATADGALELVQATVRELGSLDIFVGNAGI
                     WPEEEVPLSAMDATRWHRTMRENLDSIFFTCTAVAGSISDGGRMVLISSTAGQRGEAY
                     HADYAATKGAVISITKSLAVELASRDVTVNCVAPGWVDTEMVAGAISGQGIERISGGI
                     PLGRIASPDDIAGPVVFLCSPLARHITGEIVNVNGGSVLCG"
     gene            886..1437
                     /locus_tag="VLI40_09975"
     CDS             886..1437
                     /locus_tag="VLI40_09975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97548.1"
                     /translation="MRISLSSLARIALGLTAVAIAGCATGSVVNQHQDPVMMMVGNSG
                     AALQYRQDVRVITQSATGTPASLWAKLNAAYSDLGLPVTARDSTDFALAAQNAQFTGR
                     FGQTPMSRIIDCGSTAFGTQRANAYRVWLSVATQLRPSATGTQVRTSLAARAQDPSSS
                     TAAIQCGSTGALEADIATALGAH"
     gene            complement(1518..1934)
                     /locus_tag="VLI40_09980"
     CDS             complement(1518..1934)
                     /locus_tag="VLI40_09980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97549.1"
                     /translation="MRYGLIAAAAAATLTITAISAGAQVVTLTPANAAWCRVHRDRCA
                     DARDIRYDRRDIHRDARDIALDRRDVRADQRVVRRDVRDIRIDRANHNPAAVRADERA
                     AAAGQRAANAEYRDIFGDRRDVNQDRRDMRNDRRWP"
     gene            complement(2011..>2430)
                     /locus_tag="VLI40_09985"
     CDS             complement(2011..>2430)
                     /locus_tag="VLI40_09985"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HSU97550.1"
                     /translation="ANEQRTYVSGERPVVVDVDGVRVSPFICYDLRFPELFRAVASDT
                     DLMVVIASWPAARRAHWDALLRARAIENQCYVIGVNRTGVGDSIAYDGGSAAYDPWGI
                     ALDRSVTAAAADVTSVTVSAGEVERVRGAYPFLADRR"
BASE COUNT          466 a          765 c          788 g          411 t
ORIGIN      
        1 gctcggtgtg acggatacat tgtgcgatga ccaataccaa cgaacgcgga atactcgacc
       61 tgaaagggcg gcgcgcactc gtaacagggg cgtcgcgcgg cataggcgcc gcgacggcgc
      121 gcctgctcgc cgccgcaggg gcggacgtca tgatcgggta ccgcacccgt cgcgacgatg
      181 ccaatgcggt tgcagccgat gcagtggcgt gcggtgttcg cgccgcggtg cacgctgccg
      241 acgtcgcgac ggcggatggt gcactcgaac ttgttcaggc gaccgtacgc gagctcggaa
      301 gtctggacat cttcgtcggc aatgcaggaa tctggcccga ggaagaggtc ccgctgagcg
      361 cgatggacgc gacccgctgg catcgaacga tgcgcgaaaa cctcgactcg atcttcttca
      421 cgtgcaccgc ggtcgccggg agcatttccg atggcggaag gatggtgctg atatcaagca
      481 cagccgggca gcgtggcgag gcgtatcacg ctgactacgc ggccaccaag ggcgcggtca
      541 tctcgattac caagtccctt gccgtcgaac ttgcctcgcg tgacgtcacc gtcaattgcg
      601 tcgcgccagg gtgggtcgac acggaaatgg tggcgggtgc gatctccggc caggggatcg
      661 agcgtatctc cggcggcatc ccgctgggca ggatcgcgtc gccggacgat atcgctggtc
      721 cggtagtatt cctctgctct cccctggcgc ggcacatcac gggcgagatc gtcaacgtca
      781 acgggggaag cgttctctgc gggtgattcc tgccgcacgc tagccggatc tcacgcgaac
      841 ggctactttc tgcggagcat tctcatcctg aacggagctg gtcgcatgcg catctctctg
      901 tcatcgctcg caaggatagc tctcggactc acagctgttg caatagcggg ctgcgcaaca
      961 ggatcggtag taaatcagca ccaggaccct gtgatgatga tggtcggtaa cagcggcgcg
     1021 gcgctacaat atcgtcagga cgtccgggtg atcacgcaga gcgccaccgg cactcccgca
     1081 agcctgtggg cgaaactcaa cgcggcatat tccgatctcg gtctgccggt aacagcgcga
     1141 gacagcactg acttcgcact ggcagcgcag aatgcgcaat ttacgggcag gtttggacag
     1201 actccgatgt ctcgcataat cgactgcggc tccacggcat tcggcacgca gagggcgaac
     1261 gcctatcgag tctggctgag cgtcgcgacg cagctccgac catcggccac agggacacag
     1321 gtgcggacaa gcctggcggc aagggcgcag gacccgagct catcgaccgc cgcaattcag
     1381 tgcggaagca ctggcgctct cgaagcggac atcgcaaccg cactcggcgc acactaggat
     1441 cggccgcgca aataccgcga acgtgagaaa gccgccgagc gtgaactcgg cggctttctc
     1501 gtatcgatac gtttgcctta cggccagcga cgatcgtttc tcatgtcgcg ccggtcctga
     1561 ttcacatcgc ggcgatcacc gaagatgtcg cggtactctg cgttggcggc gcgctggcca
     1621 gcggcagcag cgcgctcgtc ggcgcggacg gcagccgggt tgtggttggc gcggtcgatg
     1681 cgaatgtcgc gcacgtcgcg cctgaccacg cgctggtcgg cgcgaacgtc gcgtcgatcc
     1741 agggcaatgt cgcgagcgtc gcggtgaata tcgcgacgat cataacgaat gtcgcgcgca
     1801 tcggcgcacc ggtcgcgatg gacgcggcac caggcagcat tggccggtgt gagtgtgacg
     1861 acctgcgcgc cagccgaaat ggcggtaatg gtaagagtcg cggccgctgc tgcggcaatc
     1921 agtccgtacc tcatgtcaat cctccgtccc gcaatgtgaa agcgccttgc atgctcgctc
     1981 acgagaatag acgctgaggt acggaggacg ttaacggcgg tcggccagaa acggatatgc
     2041 acccctgacg cgctcgacct ctccggcgga aactgtcacg gatgtgacat cggccgcagc
     2101 agcggtgacc gaccggtcca gcgcaatccc ccatggatcg tacgccgccg acccgccgtc
     2161 atacgcgatc gagtcgccga cgccggtgcg attcaccccg atcacgtagc actggttctc
     2221 gatggcgcga gctcgcagca gtgcgtccca gtgtgcccgg cgcgctgcgg gccagctcgc
     2281 gatcacgacc atgagatcgg tatccgacgc aaccgcgcgg aacagctcgg ggaagcgcag
     2341 gtcgtagcag atgaacgggc tcacacgaac accatcgaca tccactacga caggccgttc
     2401 gccactgacg taagtacgtt gctcattcgc
//
LOCUS       DATIMD010000450         3522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5094776, whole genome shotgun sequence.
ACCESSION   DATIMD010000450 DATIMD010000000
VERSION     DATIMD010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3522
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5094776"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VLI40_09990"
     CDS             <1..507
                     /locus_tag="VLI40_09990"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSU97551.1"
                     /translation="YLMKPVGPERFSAAMRRVRERQTETAALARVAELQALLTQVAPA
                     VRQPLLVTTAKGVIRIDPDEIDWIGADDYYAVLHVGTKHYLLRESLASLEERLPAARF
                     VRVHRSAIVNCSRVKEIRRGALVLSDGTTLVTSRRRRAAVRVALSKASTYMDSSVVLT
                     DNGNQAVE"
     gene            606..965
                     /locus_tag="VLI40_09995"
     CDS             606..965
                     /locus_tag="VLI40_09995"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSU97552.1"
                     /translation="MSDSAVVAFETAWAAAAVAHDTAALRCVLANNFVDTSWQGALRT
                     RRDVLASGPVTPSGLTQHFSDWRIDRFDGTVIVRGLNTVTGADGKPVSALRFTDVLRY
                     LDGRWQAVAAQETPVRQ"
     gene            1119..1823
                     /locus_tag="VLI40_10000"
     CDS             1119..1823
                     /locus_tag="VLI40_10000"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSU97553.1"
                     /translation="MTNPAQCITIIGAEHGAALGIDRLMAAAGYDVQRADDLKIATST
                     LANRPGAIVVASCTSNAPPLSMISTPRSASRDTPILILAPWASGTGSSARNMSIGNRC
                     TVEPFAPTEFLARLKTLVQDSAPNDDDAATILTFGDVEIDVPACSVRRNGTPVALTTK
                     EFDLLIALIRMRGAIASRATLLKVVWGYHSEVVTRTVDIHIAELRRKLEPIPSEPRYL
                     ITVRKRGYRFAGRQIS"
     gene            1995..2858
                     /locus_tag="VLI40_10005"
     CDS             1995..2858
                     /locus_tag="VLI40_10005"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSU97554.1"
                     /translation="MTTESNSVATPTATLTALVVDDEAIARDGLGHILSALDGIEVLP
                     GARNGREAIKMIRARRPDVVFLDVEMPDVNGIDVVRTLQDEATSDELPIFVFVTAYST
                     YAIEAFNLAASDYLVKPFTDARIARCMDRVRRLHARIRAERLSQAVLSMARNDFTAPR
                     APVTDPKAYIQRMLIPHGVRTIVVPVNTIEWIGADNDYIVVHSQGKAHLLRGTLGAVE
                     QDLDPNNFARAHRSILVNVEQIAELRRERDGSAAMVLRDGTRLPVGRRRYDEIRIRLG
                     SRSVSGIGSDH"
     gene            complement(2775..>3522)
                     /locus_tag="VLI40_10010"
     CDS             complement(2775..>3522)
                     /locus_tag="VLI40_10010"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSU97555.1"
                     /translation="RDRERERRTLALEAQLARAELHTLRAQLHPHVLFNALHTIALLA
                     RRDSNEAIRVTVLLGNVLRSVLDSGGTDERPLREEISLIEQYLAIELVRFADRLQVVW
                     EIEDQTQDAMVPTLLLQPLVENALRHGIARSVNGGTVVVSAKRSEESVCITVWNDGPA
                     LPCGRIGRRGVGLRNTEERLHRLYGDAGRLTITNDPRGGVNVRVCAPWRTLDAVAVAD
                     RTTLVVAPDAGYAAAAEANPDLVVASTSNR"
BASE COUNT          675 a         1126 c         1097 g          624 t
ORIGIN      
        1 tatctcatga agcccgtcgg acccgagcgg ttctccgccg cgatgcgtcg cgtccgcgag
       61 cgtcagaccg aaacagcagc gcttgcccgc gttgcagagc tgcaagctct gttgacacag
      121 gtagctcccg ccgtcagaca accgctgctc gttacaacag cgaagggtgt gatacgcatc
      181 gatccggacg agatagactg gatcggcgct gatgattact acgcggtcct gcacgttgga
      241 acgaagcact acctgctccg ggaatcgctc gcatcactgg aagagcgcct gccggccgct
      301 cgcttcgtgc gcgtccaccg ctcggcgatc gtgaattgca gcagggtgaa ggagattcgc
      361 cgaggagcgc tcgtgctgag tgatggcacg actctcgtta ccagcagacg ccggcgcgca
      421 gcggtgcggg ttgcattgag caaggcgtcc acgtacatgg acagttccgt cgtactcacc
      481 gataacggaa accaggcggt cgaatgaagc tcgcgtcagc agtggcgata agtctctgca
      541 tcattactgt ctccacatca gctggcgcgc agcgatcgtc ctgcgcccca gcgatgcaca
      601 aaactatgag tgattcagcc gtggtcgcat tcgagaccgc gtgggcagcg gcggccgtcg
      661 cgcacgacac cgccgcactt cgctgcgtgc tggccaacaa tttcgtcgac accagctggc
      721 agggtgcgct gcggaccagg cgcgacgtgc tcgcaagcgg cccggtcact ccctcggggc
      781 tgacgcagca cttcagtgac tggcgcatcg atcgtttcga tggcacggta atcgtgaggg
      841 ggttgaatac agtcaccggc gcagacggca aaccggtatc cgcccttcgt ttcaccgatg
      901 tgctccgtta tctggacggg cgttggcagg ccgttgccgc gcaggagacc ccggtgcgac
      961 agtagccgcg gcaggaacca tcgatggagc gatggatgga gcgaatgagc cattcgccgc
     1021 gcggctggtg cacctcgccg caacggcggc accgggccag cattgtacgg gttacgttag
     1081 cgttgcgtgt aattgttcac actgaacgga gctgacgcat gacgaatcca gcacagtgca
     1141 tcaccataat cggcgcggaa cacggagcgg cgctaggcat cgacaggctg atggccgccg
     1201 ctgggtacga cgttcagagg gccgatgatc tcaaaatcgc caccagtacg ctcgcgaatc
     1261 ggcccggtgc gatagtcgtc gcatcgtgca cctccaacgc tccgccgctc tcgatgatca
     1321 gcaccccgcg ctccgcgagc cgcgacacac cgatcctgat actcgcgccg tgggcctccg
     1381 gaaccggttc atccgcccgg aacatgtcga tcggaaacag gtgcactgtc gagccgttcg
     1441 ctcccaccga attcctggcg cgactcaaga ccctggttca ggactctgcc ccgaacgacg
     1501 atgacgcagc aaccatactc accttcggtg acgtcgagat cgatgttccc gcctgctcgg
     1561 tccggaggaa cggcacgccg gtcgccctca cgaccaagga attcgacctg ctgattgctc
     1621 tcattcggat gcgcggcgcc atcgcctccc gtgctacgct gctcaaggtg gtctggggct
     1681 accactcgga ggtggtaaca cgcaccgtcg acatccacat cgccgagctg agacgcaagc
     1741 tggagccgat accatccgag ccgcgctacc tgataacggt gcgcaagcgc ggttaccgct
     1801 tcgccggtcg ccagatcagc tgacgacatc ggacagggcg ccggtcgcag tgccgacgct
     1861 gcgcgtcggt aacgaggcga ccagcgcttt gtggcgagtg ctctgatcca gtcgtgccga
     1921 ccgttcaccc gcccgagctg accgttcggc gtggggagtc gccgtttgcg ccatcggatg
     1981 gtattctcca tggcatgacc accgaatcga attcggtcgc gacgccaacg gcgacactca
     2041 ccgccctggt ggtggacgac gaagccatcg cgcgcgacgg gcttggccat attctttcag
     2101 cactggatgg aatcgaggtt cttccaggtg ccaggaacgg ccgggaggcg atcaagatga
     2161 tccgcgcgcg ccggccggat gttgttttcc tggacgtcga gatgccggat gtcaacggaa
     2221 tcgacgtcgt tcgtacgctg caggatgaag cgacatcaga cgagctgccg atcttcgtct
     2281 tcgtcaccgc gtactccacg tacgcgatag aagcgttcaa cctcgccgcg tcggactacc
     2341 tggtcaagcc gttcaccgat gccagaatcg cgcgatgcat ggatcgggtg cgccggctgc
     2401 acgcgcgcat acgcgctgag cgactgagcc aggcagtgtt gtccatggcg cgaaatgatt
     2461 ttacggcgcc acgcgcaccg gtaacggatc caaaggcgta catacagcga atgctgatcc
     2521 cgcacggcgt acgtaccatc gtcgtaccgg tgaatacgat cgagtggatc ggcgcggaca
     2581 acgactacat cgtggttcac tcacagggca aggcgcatct cctgcgcggc acacttggcg
     2641 ccgtcgaaca ggatctcgat ccaaataatt tcgcgcgcgc gcacagatcg atcctggtga
     2701 acgtcgagca gatcgcggag ttgaggcgcg agcgcgatgg atcggcggcg atggtcctgc
     2761 gcgacggaac gcggctaccg gttggacgta gacgctacga cgagatccgg attcgcctcg
     2821 gcagccgcag cgtatccggc atcgggagcg accactagcg tcgtcctgtc agcgaccgcg
     2881 actgcatcga gcgtacgcca cggtgcacag acgcggacat tcacgcctcc acgcggatcg
     2941 ttggtgatgg tgagacggcc cgcatcgccg tagagcctgt gcaggcgctc ttccgtattt
     3001 cgcagcccca cgccgcggcg tccgatccgg ccacagggca acgccggtcc atcgttccag
     3061 accgtgatgc acacgctctc ctccgagcgc ttcgcagaga cgacgacggt gccgccattc
     3121 acactgcgtg caataccgtg ccggagtgcg ttctccacaa gaggctgcag cagcaaggtg
     3181 ggaaccatcg cgtcctgcgt ctggtcttcg atctcccata ctacctgaag ccgatcggca
     3241 aatcgaacga gctcgatcgc cagatattgc tcgatcagcg agatctcttc gcgcagcgga
     3301 cgctcatcgg tgccgccgct gtccagtaca cttcgcagga cgttgccgag cagcacggtg
     3361 acgcggatcg cctcgttgga atcacgacgc gcgagcagtg cgatggtgtg cagcgcattg
     3421 aacagaacgt gcggatgcaa ttgcgcgcga agcgtgtgca gctccgcgcg ggcaagctgt
     3481 gcttccagcg cgagcgtgcg acgctcgcgc tcgcggtccc gc
//
LOCUS       DATIMD010000451         6901 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4807772, whole genome shotgun sequence.
ACCESSION   DATIMD010000451 DATIMD010000000
VERSION     DATIMD010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6901
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4807772"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2194)
                     /locus_tag="VLI40_10015"
     CDS             complement(<1..2194)
                     /locus_tag="VLI40_10015"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HSU97556.1"
                     /translation="MIVAVSLFLCYLPALFYIRRSQSSVAEFFTSGQSAPWWLVGTSM
                     VATTFSTDTPNLVTDFVRSHGVSYNWVWWAFLLTGMATVFFYAQLWRRSGVLTDLEFY
                     ELRYSGRPAALVRGFRAVYLGFFFNIMIMSTVTLAAVKIANVMLGWGRLETIVIAGTA
                     CVLFASISGLWGVLATDMVQFALAMIGVIAAAYVSLDQPAVGGLAGMLSKIDPKTLSL
                     LPDFNDTSLTLTVLVIPLTIQWWSVWYPGSEPGGGSYVAQRILASKNERHALGATLWF
                     NVANYALRPWPWIIVALCSMLVFPTLGDIHRALPNVDPKLIGNDLAYPAMLTLLPVGM
                     KGLIIAALFAAYRSTMETHLNWGSSYLVIDFYQRFLAPGKTERHYLWISRSLTAVLMI
                     AAGAFTLFLSTASDAFQLLLSVGAGTGLIYLLRWFWWRINAWSEISAMASSFIVAIGF
                     FVAEKMGHAAPEPMPLLVTVAITTVVWVSVTLFTSPADHATLLRFYELTRPAGPGWKA
                     IRAESKIAASPDSLPQMLLGWTSGVMFVYAGLFGTGSIIYGRTFQASIWFVAFIISGV
                     VLMQVVRRIWSTEEPVRSNDTSAIAANRPCTKAVILARGLGKRMREVDTDVALDPAQA
                     AAAESGVKGMMPVGRPFLDYVLSSLADAGFTDVCIVVPPDHEEMASYYASQVTPKRLR
                     VSFAVQSAAIGTADAVLAAEEFTAGEPFVVLNSDNYYPPAPLTRLRLAN"
     gene            complement(2338..4434)
                     /locus_tag="VLI40_10020"
     CDS             complement(2338..4434)
                     /locus_tag="VLI40_10020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97557.1"
                     /translation="MADSRDRSNSSPGSQSGVTRRDFFDRTGRIALGLGALQLGLGRS
                     AFAEGLGMLGGAVTPLASRARVSADEFTLSNDAIRAMWTTAGGAFRPVRLDDVLNNAA
                     LPVSAQAFTLTLADKSTIQASDMRITSAPRTEVLSANAGASRKAERLAGHQVTMTLQD
                     PAGRIEAVWRGILRDGSNYVRQEITLRALGGEIPVHEIALLDFNARNAMAPGTVRGTP
                     IVVGDAYFAFEHPLANNAVDGDRVRCRMTRTLPLRPGTTIEFSSVVGVTHPGQLRRDF
                     LTYVERERAHPYRTFLHYNSWYDIGYFNKYTEADALGAIAAFGTELHEKRGVTLDSFL
                     FDDGWDDSKTLWHFNSGFPDGFTNVEAATRKYGAAPGVWMSPWGGYGEPHKERIEYGK
                     AQGYETNKDGFALSGPVYYKHFRDTCIDMIRKYGVNQFKFDGTGNYASTYPGSPFDSD
                     FDAAIHLIGELRTEKPDLYVNLTTGTYPSPFWLRYADSIWRGGEDHDFAGIGTSRQRW
                     ITYRDADTYEHVVRAGALFPMNSLMLHGMIYAKQAHNLMTDPGNDFTSEVRDYFGTGT
                     QLQEMYITPSLLSQANWDTIAECAKWSRNNAGTLVDTHWVGGDPQRLEPYGWASWAPL
                     KGILTLRNPSNVAQDIAIDVERAFELPDSAPRKYFARSPWAPVRGNPPIGFRAGEERK
                     LRLEPFEVLTLEMIPA"
     gene            5021..>6901
                     /locus_tag="VLI40_10025"
     CDS             5021..>6901
                     /locus_tag="VLI40_10025"
                     /inference="COORDINATES: protein motif:HMM:NF013469.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase family protein"
                     /protein_id="HSU97558.1"
                     /translation="MHRALLKMFARCFWLVLAFLVVVPRGSSAQQPATHSFQIAKGAF
                     LLDGKPLQIVSGELHYARIPREYWRHRLRMARAMGLNTIATYVFWNYHEVRPGVFDFH
                     TGNRDLAEFVRIAQQEGLWVILRPGPYVCAEWDFGGLPSYLLKTPGMTVRSDDPRYMK
                     AAQRYMDAMAAEVRPLLVTHGGPILMVQVENEYGSFGSDSGYKEATRKMLVDAGIDVP
                     LFTADGDWLFQKGGIPGVFAAANGEMNYDSLTKRVDAYNGGHGPYMVAELYPGWLTHW
                     AEPFPVTPVDSFLPAYDSMLKRGVSINLYMFHGGTNFGFTSGANYTRALPIEPSMTSY
                     DYDAPLSEAGWPTPKYYALRDVIRRDVSYAIPDVPAALPVIAVPPVRLTAVSDLTGII
                     DRVTPVIAAQPMSFEDLDQASGYVLYRHRFNSATNGVLRVRGLRDYAAVMVDGRRVAT
                     LDRRTKSFSAPVTIPAGGRLDILVENMGRINYGSALVSDRKGIIEPVTIESAGDTTEI
                     TGWSMYRLPFGSVPKLTTMPGKTNATAGIPTLYRGNFTLTRTGDTFLDMREWNKGIIF
                     VNGINLGRYWNVGPQQTLYLPGAWLHKGRNSIVVFELNGHDGAPEITGLTQPILTQLN
                     AGP"
BASE COUNT         1410 a         2049 c         2114 g         1328 t
ORIGIN      
        1 cattagccag gcggagacgc gtgagcggag ccggcggata gtagttgtcc gagttgagta
       61 ccacaaatgg ctcgcccgcg gtaaactctt ctgcagcgag cactgcatcg gcggtgccga
      121 tggccgcgga ctgaaccgcg aacgagacgc gcagccgctt tggagtgacc tgactggcgt
      181 agtagctcgc catctcctca tgatccggtg gaacgacgat gcagacgtcg gtaaacccgg
      241 cgtcagcgag cgagctcagc acgtaatcaa ggaagggccg gccaacgggc atcattccct
      301 tgactccaga ctcggccgcc gccgcttgtg cgggatcgag cgcgacatcg gtgtccacct
      361 cgcgcattcg cttgccgagc ccacgagcca gaatcacagc ctttgtgcac ggacgatttg
      421 ccgcgatcgc ggaagtgtcg ttgctgcgca ccggctcctc ggtggaccag atgcgcctca
      481 cgacctgcat cagcacgacg ccgctgatga tgaatgcgac aaaccatatc gatgcctgga
      541 acgtacgacc gtagataatg ctgccggttc cgaaaaggcc tgcgtaaacg aacatgacgc
      601 cggaagtcca gccgagcagc atctgtggca ggctgtcagg tgaggcggct attttggact
      661 ccgcacgaat cgccttccat ccgggaccgg cgggacgcgt gagctcgtag aagcgaagca
      721 gcgtcgcgtg atcggcgggg ctcgtgaaca gggtgaccga tacccagacc accgtcgtta
      781 tggcaactgt gacaagaagc ggcatcggct cgggtgccgc atggcccatc ttctccgcca
      841 cgaagaatcc gatcgcgacg atgaacgacg atgccatcgc cgatatctca ctccacgcat
      901 tgatgcgcca ccagaaccag cggagcagat agatgagccc cgttccggcg ccgacggaca
      961 gcagtaactg aaatgcgtcg ctggccgtcg atagaaacag ggtgaatgca cccgcggcga
     1021 tcatcagaac agcggtgagc gaacgggaga tccatagata gtgacgctcg gtctttccgg
     1081 gcgcgaggaa gcgctggtag aaatcgatca ccaggtagga tgatccccag ttgaggtgcg
     1141 tctccatggt cgatctgtac gctgcgaata gcgcggcgat gatcagtccc ttcattccca
     1201 ccggcagcag cgtgagcatc gccggatagg cgagatcgtt gccgattagc ttcggatcga
     1261 cgtttggcaa tgcgcggtga atgtcgccga gcgtcgggaa gacgagcatg gaacagagcg
     1321 cgacgattat ccacggccag ggacgcaaag cgtagtttgc aacgttgaac cagagggtcg
     1381 cgccgagcgc gtgacgctcg ttcttcgatg cgagaatgcg ctgcgcgaca tagctaccgc
     1441 caccaggctc cgaacccggg taccagaccg accaccattg gattgtgagc gggatgacga
     1501 gaacggtgag cgtgagcgac gtgtcgttga aatccggaag gagcgacagc gtcttggggt
     1561 cgatcttcga gagcattccg gcgagaccgc cgacggccgg ttgatccagc gagacatatg
     1621 cggcagcgat cacgccgatc atcgcgagcg cgaactggac catgtcagtc gcgagcacac
     1681 cccacaggcc cgatatcgag gcgaacagca cgcacgccgt tccggcaata acgatcgtct
     1741 cgagacgacc ccagccgagc atcacgtttg cgatcttgac ggcggcgagt gtcaccgtcg
     1801 acatgatcat gatgttgaag aagaagccga ggtacacagc acgaaagccg cgcacgagcg
     1861 cggccgggcg accggagtaa cgcagctcgt agaactcgag atcggtgaga acgcccgaac
     1921 gacgccacag ctgagcgtag aagaagaccg tggccattcc cgtgagcagg aatgcccacc
     1981 agacccagtt gtacgagaca ccgtgcgagc gtacgaagtc tgtcaccagg ttgggtgtgt
     2041 cggtgctgaa tgtcgtggca accatcgacg ttccgaccag ccaccacggg gcggactgcc
     2101 cggatgtgaa aaactccgcc acgctcgact gcgagcgccg gatgtagaac agcgccggca
     2161 gatagcagag aaagagactt accgcgacga tcacccaatc aatcgacgtc aactgcattc
     2221 ggttgtatcc tgttggctat gtaggtgtag gtgcggtaac gtcagggcgc cgatgcatcc
     2281 gcgggtaacg atataaataa tcgtgggatt ccggagacgc gcgaatcttt ccgcgcctca
     2341 ggctggtatc atttcaagcg taagtacctc gaatggctcc aatcgtagct tgcgctcctc
     2401 gccggcgcgg aatccgatcg gcgggtttcc acggactgga gcccacggac tccgcgcgaa
     2461 atacttccgc ggtgccgagt ccggaagctc gaacgcacgc tcgacgtcga tcgcgatgtc
     2521 ctgcgcaacg ttgctgggat tccgaagcgt gagaattccc ttgaggggcg cccacgacgc
     2581 ccatccgtac ggctccagtc gttgcggatc cccgcctacc cagtgcgtat cgaccagagt
     2641 cccggcgttg ttgcgggacc actttgcgca ttcggcgatc gtgtcccagt tcgcctgtga
     2701 cagtagcgat ggcgtgatgt acatctcctg cagctgagtt cccgtgccga aatagtcacg
     2761 gacttcggat gtgaagtcgt tgcctggatc ggtcatcaga ttgtgcgcct gcttcgcata
     2821 gatcattccg tgcagcatca gcgaattcat cggaaatagt gcacccgcgc ggacaacgtg
     2881 ctcgtacgtg tcagcatcgc ggtaagtaat ccagcgctgt ctgctggtgc cgattccggc
     2941 gaagtcatga tcctcgccgc cgcgccagat cgaatccgcg tagcgcagcc agaacggcga
     3001 cggatacgta ccggtcgtga gattcacgta caggtccggc ttctcggtgc gcagctcgcc
     3061 aattagatgg atagctgcat cgaagtcgct gtcgaacgga cttccggggt atgtgctcgc
     3121 gtagttgcct gttccgtcga acttgaactg attcacgccg tacttccgga tcatgtcgat
     3181 gcatgtatcg cggaagtgct tgtaatagac cgggccggaa agcgcgaaac cgtccttgtt
     3241 ggtttcgtag ccctgcgcct tgccgtactc gatgcgctcc ttgtgcggct cgccgtagcc
     3301 tccccatggc gacatccaga ctccgggcgc ggcgccgtac ttgcgagtcg ccgcttccac
     3361 gttcgtgaat ccgtccggga atccggagtt gaagtgccac agcgttttgg agtcgtccca
     3421 gccgtcgtcg aacagaaacg aatcgagcgt aacaccacgc ttctcgtgca gctcggttcc
     3481 aaatgccgcg atggcgccaa gtgcatcggc ctccgtgtac ttgttgaagt agccgatgtc
     3541 gtaccaggag ttgtaatgca gaaaggtgcg atacggatgc gcacgctcgc gctcgacgta
     3601 cgtgaggaag tcgcgccgca gctggcccgg gtgcgtgaca ccgacaaccg agctgaactc
     3661 gatggtcgtt ccggggcgca atggcaacgt gcgcgtcatc ctgcaacgga ctcgatcgcc
     3721 gtccacggca ttgttggcaa gcggatgctc gaaggcgaaa tacgcatcgc ccacaacgat
     3781 cggtgttcca cgaactgtac cgggtgccat cgcgtttcgc gcgttgaaat cgagcagcgc
     3841 gatctcgtgc accggaatct ctccgccgag tgcgcgtagc gttatctcct ggcggacata
     3901 gttcgatcca tcgcgcagta tcccacgcca taccgcctcg atacgaccgg ccggatcctg
     3961 cagcgtcatc gtcacctgat gccccgcaag tcgctcggcc ttgcgtgatg caccggcatt
     4021 tgcggacaac acttccgtgc gtggcgcgga tgtgatgcgc atgtcactcg cctggatcgt
     4081 tgatttgtcg gcgagtgtca gtgtgaatgc ctgtgcggaa accggcagag cggcgttgtt
     4141 caacacgtcg tccagccgca ccgggcgaaa cgcgccgcca gctgtggtcc acatcgctcg
     4201 tatggcatca ttgctgagcg tgaactcatc cgccgagacc ctagcgcgac ttgcgagcgg
     4261 tgtgaccgcc ccgccgagca tgcccagccc ttcggcgaag gcgctgcggc cgaggccgag
     4321 ctggagtgcg ccgagtccga gcgcgatgcg gccggtccgg tcgaagaagt cgcgtcgggt
     4381 gaccccggac tgggatccgg gggaagaatt ggaacgatcc cggctatccg ccacaggtcc
     4441 gtgctcctta tatatgtgtt gtgagcagat cgggatcgat cgccgccgtg gcgagattat
     4501 cgcctgggca gtcggcggtc aaggagacga cgcctatcag gcacgcgagc cgcgcaatcg
     4561 ctgttatcgg ggagcctcac cgaacgcggc cgcgagcagc agttgggctg agcgaacctg
     4621 cctggtgtcc aaatgccatt cactgatctt gacactatca ttgagggcgg cattattgac
     4681 ggtgtccgtg ctccggagct tcttctaccg tgccgacttt gcacctgaag cccgcgccga
     4741 agagagccct gcgagataat cggcgtagcg caccccagcg gaacactcgt gcaaaatacg
     4801 acagcaagcc gaagccggat tttctgggtc tcagcgcttg tccacggcgc gattatcctg
     4861 atcgccgtca ttggcacatc actactcttg aaaagcggaa gtggcagagc tcggatgcac
     4921 agcatctcca ttgccctgtc caccatagcg atcgtactgg tatcgttggc tgtggtgatt
     4981 ccaatcctac agcggcttcg ctcgtcgaaa cgctgaccgg gtgcatcgcg cactgctgaa
     5041 gatgttcgct cgctgcttct ggctggttct ggcattcctc gttgtcgtgc cgcgcggatc
     5101 ttctgctcaa cagccagcca cacactcttt ccagatcgcc aaaggcgcat ttctactcga
     5161 cggaaagccg cttcagatcg tatcgggtga gctgcattat gctcgcattc cgcgggaata
     5221 ctggcgccac cggctccgga tggccagggc gatgggcctc aataccatag ccacatacgt
     5281 gttctggaat tatcacgagg tgcggcccgg cgtgttcgac ttccacaccg ggaatcgcga
     5341 cctcgcggag tttgtccgga tcgcacagca ggaaggattg tgggtgattc tgcgtccggg
     5401 gccgtacgtc tgcgcggaat gggacttcgg cgggctgccg tcgtatctgc tcaagacacc
     5461 ggggatgaca gtgcgcagcg acgatcctcg ttacatgaag gccgcacaac ggtacatgga
     5521 cgccatggcc gcggaagtac ggccattgct cgtcacgcac ggtggcccga ttctcatggt
     5581 gcaggtcgag aacgaatacg gctcgttcgg ctccgactcc ggctacaagg aagcgactcg
     5641 caagatgttg gtcgacgccg gcatcgacgt gccgctgttc actgccgacg gtgactggct
     5701 gtttcagaag ggcggaatcc ctggcgtgtt cgcagccgct aacggcgaga tgaattatga
     5761 cagtctcacc aagcgcgtcg atgcgtacaa cggtggacat ggtccgtaca tggttgcaga
     5821 gctgtatcct ggatggctca cgcactgggc ggagccgttt cccgtaacgc cggtcgacag
     5881 ttttctccca gcgtacgaca gcatgttgaa gcgcggtgtg agcatcaatc tgtacatgtt
     5941 tcacggcggc accaatttcg gcttcacttc cggtgcgaac tacaccaggg cgctgccaat
     6001 cgagccgagc atgacgagtt acgattacga cgcaccgctt tcggaagcgg gatggcccac
     6061 gccgaagtac tacgcgttgc gcgatgtgat acgtcgggac gtgtcgtacg cgattcccga
     6121 cgtgcccgct gcgttgccgg tgatcgcagt accgccggtt cgtctgaccg ccgtgagcga
     6181 cctcacgggc attatcgatc gtgttacacc tgtgatcgcc gctcagccga tgtcgttcga
     6241 agacctcgat caggcgagcg gctacgttct ctatcgccat cgattcaata gcgcgacgaa
     6301 tggcgttctg cgcgtccgcg gactgcgcga ttacgcagcg gtcatggtgg atggacgccg
     6361 cgtcgcgaca ctcgatcggc gcacgaagag tttctcagcg cccgtgacga ttcccgccgg
     6421 aggccggctc gacattctcg tcgagaacat gggacgaatc aattacggtt cggctctcgt
     6481 gagcgaccga aagggaatca tcgagccggt gaccatcgag agtgccggcg atactaccga
     6541 gatcacggga tggtcgatgt atcgcttgcc gttcggcagc gtaccgaaat tgacaaccat
     6601 gccgggcaag acgaatgcaa ctgctggaat accgacgttg taccgcggca acttcacgct
     6661 cacgcgcacc ggcgacacgt ttctcgacat gcgtgagtgg aacaagggca tcatctttgt
     6721 gaacggtatc aacctcggca gatactggaa tgtcgggccc cagcagactt tgtaccttcc
     6781 gggtgcatgg cttcacaaag gacggaactc aatagttgtg ttcgagctga atggacacga
     6841 tggcgcgccg gaaatcaccg gattgacgca gccgattctc acacaactga acgccggacc
     6901 a
//
LOCUS       DATIMD010000452         9015 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1630022, whole genome shotgun sequence.
ACCESSION   DATIMD010000452 DATIMD010000000
VERSION     DATIMD010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9015
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1630022"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(323..706)
                     /locus_tag="VLI40_10030"
     CDS             complement(323..706)
                     /locus_tag="VLI40_10030"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU97559.1"
                     /translation="MLMARDVTASLAFYARLGFVDAFRDVSATPRYAVVRRGQVELHL
                     QWADPGQWAHSGDRPAYRFPTPDVDALYAEALAAGAVAREADGGPYSTPADTPWGTRE
                     FHVRDPGGNVLQFYSTQPPRRTRAV"
     gene            complement(925..1665)
                     /locus_tag="VLI40_10035"
     CDS             complement(925..1665)
                     /locus_tag="VLI40_10035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97560.1"
                     /translation="MSDQFTQLKREVLLLRACVLSATLCLVIVALTAFRRPSAPTRFD
                     EIDVQRINIREPDGKLRMVLSDKARSTGPIAYGKPFGRRGGTRAGIIFFNDEETEDGG
                     LVFDGKTENGKYAAGAQLSFDQYNHDQVMTLAYNDRNGDRNVGLVMGERSGPGLDTRA
                     PQLDSLDMMADGPAKDSALRATFGPINGVPQFAPRVFVGRRDNGNAALVLMDRKGRPR
                     LRLLVDSLGSARIEFLNDSSRVVRSFTP"
     gene            complement(1987..3042)
                     /locus_tag="VLI40_10040"
     CDS             complement(1987..3042)
                     /locus_tag="VLI40_10040"
                     /inference="COORDINATES: protein motif:HMM:NF013384.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low specificity L-threonine aldolase"
                     /protein_id="HSU97561.1"
                     /translation="MQETKALPQTLPNFASDNWAPAHPDVMDAVVRANNGPVPSYGGD
                     PYTLEAEALIRQEFGAAAQPFFVFTGTGANVLSIESCIRPYEAILCSDTAHIQTSEWG
                     AVERMTGSRIIPIHAPDGKITADGVAAAIPQQDGHAGARPGVVSLTQATEYGTIYTPD
                     EVSAIAHVAHEHGMYVHMDGARLANAAASLGLSLREVSTGSNVDVLSFGGTKNGAFCA
                     EAVVFMNEHLARDFVLRRKQAMQMASKLRYMSVQFTALLTNDLWLRNARHANAMARRL
                     SDGLASIPGVTVTQKVEANEVFVIVPDRAIAPLNKAASLHVWNEATSELRLVCSFQTS
                     EDEVDGFVARAREIIAA"
     gene            complement(3099..6314)
                     /locus_tag="VLI40_10045"
     CDS             complement(3099..6314)
                     /locus_tag="VLI40_10045"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004225.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="error-prone DNA polymerase"
                     /protein_id="HSU97562.1"
                     /translation="MVSARLVGLMRYVELRAHTAFSFGDGAVTPEALVSRAARLGYEA
                     IGITDTADLGGIVRAKVAADEHGIKLIAGTELRVDGRPMAFLARDIDGCRNLASLITH
                     ARVGSIESWSPTNRQRRRGMPSVSWSHVADHTEGLHLLTGPASGALAHLVREGRRDEA
                     KRTLHEWREAFSGRIAVEVQRHRGCGDESALAGALVDLATTATTPWVVCNDPRYLGDN
                     SRLIHDMLTALRAGLDLDRAAERGLLHPNGEWHLRSPDTMLEMWAGLEEGIEESGRIA
                     SECDFSVRWLRPPLPAFPIPDDADADEYLRVKVYEGATTRWGATLSDRQCAQLEHELG
                     VIRRLGFAGFFLVMWDAVRFARSKNILCQGRGSAASSAVAYCLGVTAVDPILNGLLFE
                     RFLSEARVPGPSGEYTEAPDIDLDIEHDRREEVLNYVYGKYHREHSAITCTVQTYRAP
                     NAILDAMRALGYPVELGLELSKRLHRFDPEAGATKVRGALAAQFGVDLTGPRGLAILT
                     AMSAFEGLPRMRSTHVGGFVLSRDLLGDYLPIEHTSMGRTIIQFDKDDLDYIGMPKFD
                     FLGLGALALVRRAFDSIETRSGRRLELYELPQDDAPTFDMISSGETIGTFQIESRAQI
                     ASILNTRPQTMYDIVVQISLIRPGPIQGEFVHPYTRRRRGLETPSYAHPALEPILRRT
                     YGIPIFQEQAMAISSVLGGFTPPEADRLRRTMGNIRKKTRLENVLVELTDRMVNNPVP
                     DPPVSREVAEQISRDLSTFANYGFPESHAWSFALIAYATAYLKCHYATDFYLGLLNAQ
                     PMGFYPNATIIHEARRRGVEVRPPCLRDGRRICTTEDTAESGQPALRIGWRHIRSVGE
                     RTLDRLSEAQDFLPFTSIADVVERVGLTRAESLQLARAAAFGAWEPDRRRAAWEALRA
                     VGDNLPFAPAHRFRYDPRELDERELIFLDYQATGICVTGHPMEHVRERLDRAGIVRSR
                     DIQSLRDGQRVVIAGLVTVRQRPGSAKGTIFILLEDEWGFVNVIVSPRLVDRYNDIVK
                     YARFIVVEGRFERDGGVTNVVGRRFRELAVEQLVYGSHDFH"
     gene            complement(6287..7591)
                     /locus_tag="VLI40_10050"
     CDS             complement(6287..7591)
                     /locus_tag="VLI40_10050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97563.1"
                     /translation="MSFLCLHNLAWLASQPATLHAPLLTIVPRVLADGDLVWADLRGL
                     PVRDTTERVRNAFTAHNAIDSSVKCGVASTAVAAEVAARHSPQSVTYVRDGYDRDFLA
                     PFPIAVLNPDRKLANLLDGTGIELCRDLARLSQEEVEVRLGAEGVRLWRLTRADDARR
                     IFGSMPRALPEASLEWTDYAIRRAERLVFVINALFGNVCETLKSRGEGAVAVTISFAL
                     ANRTTIDHPIRAARPTASQNAWMRLVRLEIERVVFPDAVTGITLRVDSTSGTGGRQGD
                     VFDRGFGSESAAEEALGQLMDDQGAIAVEPENSAHPLLDRRTAWTSVSATRVMERAHI
                     YAASLSRSGESALTLQLLPEPRRISVATFRRRGDEIPRSYRDEGRTYDIVEAAGPDRV
                     SGGRWDDAYARDYFRCVVEESGLVWLYCDRRSGAWYLHGWWD"
     gene            complement(7609..8304)
                     /locus_tag="VLI40_10055"
     CDS             complement(7609..8304)
                     /locus_tag="VLI40_10055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97564.1"
                     /translation="MATASALRDLRELLDLKFPDAAPLQRHRTEVVATGIDELDRIFP
                     SGGFPRGRLSVWTPGGGATAVLRSACRSAVAGGERAVWIDGSGTMAGAFWDAGPVLLR
                     PGSRLHALRAAEALLRSGGLAVVVLAGADPEGTENVRLSRAAHESGSVCIALTSSATT
                     SALRASSTIRPHGYVWRRDPHGDAAVVDAATLDVRISSLGWNRRARVVLAVRRDELRL
                     ALSVDLPDRRGQR"
     gene            8502..>9015
                     /locus_tag="VLI40_10060"
     CDS             8502..>9015
                     /locus_tag="VLI40_10060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97565.1"
                     /translation="MILVTAIAALFVAPVTVTSAPVTPTPVTPAPAITYNGRERQLRV
                     APPRLDGDVTMDGKLDEPQWQQAARLTGFSQFAPSDGVPAADSTEILVWYSSTAMYFG
                     VRAYESHEAVHPNLSDRDHIDAEDRIEFLLSTFNDGRQAFVFQVNPLGSQADGTLVES
                     GASNNTAGLGT"
BASE COUNT         1797 a         2912 c         2655 g         1651 t
ORIGIN      
        1 gatcgcccga ctgcttcaac gttcgttagc ctgctggcaa caacggccgt tcgctggccg
       61 tgcagcgtaa acgtgtccga cgcaaacgcg aagcgatgcg agccgaactg gaggaagctc
      121 aacagcggaa tccgatcacg cggccgctgt agtgcagcgg ccattaagcc gatcgcagtc
      181 gcgaagacag cactgagggc gagaactcgc tttatgagga tgaccggtag cagcctgacg
      241 cccaagctaa gctgcaaagc ggcgcacgct ggaccatacc gaatgaggac gtctgtgccg
      301 ctttgtcaac ttcagcgctt cgttagaccg cacgggtgcg acggggcggt tgcgtgctgt
      361 agaactggag cacgttaccg ccggggtcac gcacgtggaa ctcgcgcgtt ccccacggcg
      421 tgtccgcggg cgtactgtac gggccgccgt ccgcttcccg cgcaacggcg ccggccgcga
      481 gcgcttcggc gtacagggcg tccacatccg gcgtcgggaa tcggtacgcc ggccggtcgc
      541 cggagtgcgc ccattgtccg gggtccgccc actgcaggtg caactccact tggccccgcc
      601 gtacgactgc gtagcgcggg gttgccgaca cgtcgcggaa cgcatcgacg aagcccaacc
      661 gcgcgtagaa cgccagcgag gcggtgacgt cgcgtgccat aagcacgggg tgaacggcgg
      721 tgatcgcggt cggcatgtga gcctcggaga aatggcagtg cggtctaacg ccccagctaa
      781 cttgcgagcg agttcaataa aagccgagcg aagcgagctt cctcagatcg ctcgccaagt
      841 tcagcgttcg ttaggcgtcg gtgcgagcga cggtgacacg gtgatccaat acagaccgac
      901 ggatcgagag ttcatgcgat gcggctacgg agtgaagcta cggactacac gactactgtc
      961 gttgagaaat tcgatgcgcg ccgaacccag tgaatccacg agaagtctca ggcgagggcg
     1021 acccttgcgg tccatcagca ccagggcagc attgccgttg tcgcgccgac cgacaaacac
     1081 tcggggcgcg aactgtggca ctccgttgat cgggccgaat gtggctcgca gggcggaatc
     1141 cttcgctggc ccatccgcca tcatgtcgag cgagtccaac tgcggcgcac gggtgtcaag
     1201 gcccgggcca ctacgctctc ccattacaag acccacgttc cgatctccgt tccggtcatt
     1261 gtaggcaagc gtcatcactt gatcgtggtt gtattgatcg aacgacaact gagcgccggc
     1321 agcgtacttg ccgttttccg tctttccgtc gaatacgagt cccccgtctt cggtctcttc
     1381 gtcattgaag aagatgattc cggcgcgcgt tccgcctcga cggccgaatg gttttccata
     1441 ggcaatcggg cccgtcgacc gagccttatc cgagagcacc atccggagct tgccatcagg
     1501 ctcgcggatg ttgatgcgtt gcacgtcgat ttcatcgaaa cgcgtcgggg cagacggccg
     1561 ccgaaatgcg gtcaatgcga cgatgaccag gcagagcgtc gcgctgagta cgcatgcgcg
     1621 aagaagtagg acctcgcgct tcagttgagt aaactggtct gacatgaggg atacctccgg
     1681 tataggtcat ttccacaggg aaaaatgctg cgagggaact tgaccacttt ggacagggcc
     1741 tcatgacaaa acgttaagga cgcggcgcga tcagtgagag gctggctgac aacgccagac
     1801 gtaggcctgg cgcggcgacg actggttgtt tttgggtgcg cgtctagaat gcgtaagttc
     1861 gtcagggcat cgcgcaacgg gaggccggtt ggcggcttaa cgcatatcag actgcaagtt
     1921 ctgcttcaaa aacactgcaa gcatgcagta taaggcgaat ggtcgagcag aacacacccc
     1981 aggatgctac gccgcaataa tctccctcgc gcgagcaaca aaaccatcaa cctcgtcctc
     2041 gctggtctgg aacgagcaca ccagtctcag ctccgatgtc gcttcgttcc agacgtgcag
     2101 cgaagcagcc ttgttcaacg gcgcgatcgc gcggtcgggg acgataacaa atacttcatt
     2161 cgcctcaacc ttctgcgtga ctgtaacacc cggaatcgac gccagtccgt cgctcaggcg
     2221 ccgagccatc gcgttcgcgt gccgggcatt gcgaagccac aggtcatttg tgagaagcgc
     2281 ggtgaactgc accgacatgt agcgcagctt ggatgccatc tgcatcgcct gcttgcggcg
     2341 cagaacgaaa tcacgcgcga gatgctcgtt catgaacacg acggcctcgg cgcagaacgc
     2401 gccgttcttc gttccgccga atgagagcac gtcgacatta cttccggtgg acacttcgcg
     2461 cagcgagagg ccgagcgacg ctgcggcgtt cgcgaggcgc gcgccatcca tgtgcacgta
     2521 catcccgtgc tcgtgagcga cgtgtgcaat cgcgctcacc tcatccgggg tgtaaatcgt
     2581 gccgtattcc gtggcctggg tcagcgacac gacgcctggt ctcgcccccg catgaccatc
     2641 ctgttgcgga atcgcggcgg caacaccgtc tgcggtaatc tttccatcgg gtgcgtggat
     2701 cggaataatt ctggagcccg tcatgcgctc caccgctccc cactcgctgg tctgaatgtg
     2761 tgcagtatcg ctgcacagta tcgcttcgta cggacgtatg cagctctcga tcgagagtac
     2821 gttcgcgccc gttccggtga acacgaaaaa cggctgcgcc gccgcaccga actcctgcct
     2881 gatcagtgcc tcggcttcca gcgtatatgg atctccgccg tacgacggca cggggccgtt
     2941 attggcgcgg accacggcgt ccatcacgtc tggatgcgca ggcgcccagt tgtcactggc
     3001 gaagttgggg agcgtctggg gaagtgcctt cgtttcttgc atggctgaag tgtggacagg
     3061 cagagtacga ccgtcaagct ccaacatgcc caacgctctc aatgaaaatc gtgagacccg
     3121 tacaccagct gctcaactgc aagctccctg aatctgcgcc ccaccacatt cgtgactccg
     3181 ccgtcgcgct cgaatcgccc ctcgaccacg atgaagcgcg cgtatttcac gatatcgttg
     3241 tagcgatcca caagcctggg tgaaacgatc acgttgacga aaccccactc gtcctcgagc
     3301 aggatgaaga tcgtgccctt cgcactgcca ggtctctgac gcacggttac aaggccggca
     3361 atcacgacac gctgcccatc gcgcaaactc tgtatatcgc gactcctgac gatgccggcc
     3421 ctgtcgagac gctcgcgcac gtgctccatg ggatgacctg tcacacatat ccccgtagcc
     3481 tgataatcca gaaatatcag ctcacgctca tcgagttccc tagggtcgta acgaaagcga
     3541 tgcgcgggcg cgaacggcag attatcgcca accgcacgca acgcctccca tgccgcacgc
     3601 ctgcggtccg gctcccatgc gccgaaagcg gcggcgcgag cgagctgcaa cgactcggcg
     3661 cgcgtgagac cgactcgctc cacgacgtcg gcgatggaag tgaacggcag aaaatcctga
     3721 gcctcgctca gtctgtcgag tgtgcgctca ccaacgcttc gaatgtgccg ccagccgatg
     3781 cgtagcgctg gctgcccgga ctctgccgtg tcttccgtag tgcaaatccg tctgccgtca
     3841 cgcaggcaag gaggtctcac ttccacaccg cgtctgcgcg cctcatgaat gatcgtcgca
     3901 ttgggataga atcccattgg ttgtgcgttc agaaggccca ggtaaaaatc ggttgcgtag
     3961 tgacatttga gatacgcggt cgcatacgcg atgagtgcaa agctccatgc gtgcgattcc
     4021 ggaaatccat aattcgcgaa ggtcgacaga tcgcggctga tctgctccgc gacttcacgc
     4081 gaaactggcg ggtccgggac gggattgttc accatgcgat ccgtcagctc gacgagcaca
     4141 ttttccaacc ttgtcttctt gcgaatgttt cccatcgtgc ggcgcaggcg atcggcttcg
     4201 ggtggcgtga atcctccgag caccgacgag atcgccatcg cctgctcctg aaagatcgga
     4261 atcccatacg tcctgcgaag aatcggctcc agggcaggat gcgcgtaact cggcgtttcg
     4321 agcccgcggc gacggcgtgt gtatggatgc acgaattcac cctgaatagg gccgggacgg
     4381 atcaacgata tctgtacgac aatgtcgtac atggtctgcg gacgcgtatt gagaatcgag
     4441 gcgatctgtg ccctgctctc gatctggaag gtgccgatcg tctcgccact cgagatcatg
     4501 tcgaacgtcg gcgcgtcgtc ctgcggcagc tcgtacaact cgagccgcct gccactccgt
     4561 gtctcgatcg aatcaaatgc gcgtcgcacc agagcgagcg ctcccagccc aaggaaatcg
     4621 aacttcggca tgccgatgta atccagatcg tccttgtcga actggatgat cgtgcgtccc
     4681 atgctcgtgt gctcgattgg caggtaatcg ccgagcagat ctctggagag cacgaaacca
     4741 ccaacgtgtg tcgagcgcat gcgcggcaac ccttcgaaag ccgacatggc agtcaggatc
     4801 gcgagtcctc gcgggccagt cagatcgaca ccgaattgcg cggccagcgc tccccggacc
     4861 tttgtcgctc ccgcttcagg gtcgaagcga tgcagtcgct ttgacagctc gagcccaagc
     4921 tcgacgggat atcccagcgc gcgcatcgcg tccagtatcg cgttcggcgc gcgatacgtc
     4981 tgaaccgtgc acgtaatcgc ggaatgctcg cggtgatact tgccgtacac gtagttgagc
     5041 acttcttcac gtcggtcgtg ctcgatgtcg agatctatgt cgggcgcttc ggtgtactcg
     5101 ccactgggtc ctggaacccg cgcttcggaa agaaatcgct cgaacaacag accattcaga
     5161 atgggatcta ccgcagtcac gccaagacag tacgcgaccg ctgagcttgc cgcgcttcca
     5221 cggccctgac agagaatatt tttgctgcgc gcaaaacgta cggcatccca catcacgaga
     5281 aagaaaccgg cgaaaccaag cctgcgaatc actcccagct cgtgctccag ctgcgcgcac
     5341 tgcctgtcgc tcagcgtcgc gccccagcgt gtcgttgcac cttcgtacac cttcactcgc
     5401 agatactcgt ctgcatccgc atcatcagga atggggaagg caggcaacgg cggcctgagc
     5461 cagcgcaccg agaaatcaca ctccgatgcg atgcgcccgc tctcctcgat tccctcctcc
     5521 aggccggccc acatctcgag catcgtgtca ggtgatctga gatgccattc accattcgga
     5581 tgcagcaggc cgcgctccgc ggcacgatcg agatccagac ctgcacgcaa cgcggtgagc
     5641 atgtcgtgaa tgagtctgct gttgtcgccc agatagcgcg ggtcgttgca gaccacccat
     5701 ggagttgtcg ccgtcgtcgc gagatcaacc aatgcaccgg cgagagcact ctcgtcaccg
     5761 catccacgat ggcgttgcac ctcgaccgct atcctcccac tgaaagcttc ccgccactca
     5821 tgcagtgtcc gcttcgcttc atccctccga ccctcacgca ctagatgcgc aagagcgcct
     5881 gacgccggcc ctgtcagcag atgcaaccct tccgtatgat ccgccacatg cgaccatgac
     5941 acgctcggca ttccgcgcct gcgctgccga tttgtcggcg accaactttc tatcgatccg
     6001 actcgcgcgt gagtaatgag tgaggcaagg ttgcgacagc catcgatgtc acgggcaaga
     6061 aacgccatcg gcctgccatc cacgcggagc tcggtgcctg caatgagctt gatcccatgc
     6121 tcgtcggccg cgactttggc tcgaacgatg ccgccaaggt cggccgtgtc cgtgatgccg
     6181 attgcttcgt atccgagtct ggccgcacgc gataccagtg cctccggcgt gaccgctcca
     6241 tcgccgaacg agaacgcggt gtgcgcacgc agctccacat aacgcatcaa tcccaccagc
     6301 cgtgcagata ccacgcgcca ctgcgcctgt cgcagtacaa ccagaccagg ccactctcct
     6361 ccacgacgca gcggaagtag tcgcgcgcgt aggcatcatc ccagcgacca cccgacaccc
     6421 gatcaggacc tgctgcctcg acaatatcgt acgtccttcc ttcatcacgg tacgagcgcg
     6481 gaatctcatc gccgcgccgc ctgaacgtcg caaccgaaat gcgccgcggc tcgggcagaa
     6541 gttgcagcgt gagggccgac tcgccactgc gtgacaggga cgccgcgtag atatgcgcgc
     6601 gctccatcac gcgcgtggcc gacaccgacg tccacgcagt gcgacggtcc agcaacggat
     6661 gtgcgctgtt ctccggctcg acagcaatgg cgccctggtc atccatcaac tgtcccagcg
     6721 cttcctcggc ggccgactca ctgccaaagc cgcgatcgaa gacgtcaccc tgccgccctc
     6781 cggttcccga cgtcgagtcc acgcgcagcg tgatgccggt caccgcatcc gggaatacga
     6841 cgcgctcgat ctccagacgc acgagacgca tccacgcatt ctggcttgct gttgggcgcg
     6901 cggcacgtat cggatgatcg atcgtcgtgc gattcgcgag tgcgaagctg atcgtcaccg
     6961 cgaccgctcc ctcaccgcgc gacttgagcg tctcgcacac gttgccgaac aatgcgttga
     7021 tgacgaacac cagacgctcc gcgcggcgta tcgcgtaatc ggtccactcg agcgaggctt
     7081 cgggcagcgc gcgcggcatc gatccgaaga tgcggcgcgc gtcatcggcg cgcgtgaggc
     7141 gccagagccg cactccttcg gcgccaagtc gcacctcgac ttcctcctgg gagagacgcg
     7201 cgagatcgcg gcacagctcg atgcccgttc catcgagcag attggcgagc ttgcgatcgg
     7261 gattgagaac ggcgatcggg aacggcgcga gaaagtcgcg atcgtatcca tcgcgcacgt
     7321 acgtgaccga ttgcggtgaa tggcgagccg cgacttcagc ggcgaccgca gtcgatgcga
     7381 ccccgcactt cacgctgctg tctatcgcat tgtgcgcggt gaatgcgttg cgcacacgct
     7441 ccgtcgtatc gcgcacgggc aatccgcgca gatccgccca cacgagatca ccatcggcca
     7501 gcacgcgtgg cacgatcgtg aggagcggtg cgtgcagtgt ggctggctgt gacgcgagcc
     7561 acgcgaggtt gtgcaggcag aggaatgaca ttgccgctta accagccatc accgctgccc
     7621 acgccggtcc ggtagatcca ccgacaacgc cagccgcagc tcatctctcc gcaccgccag
     7681 cacgacacgc gccctgcggt tccatccgag tgatgatatc cgcacgtcca gtgtcgctgc
     7741 atccaccacc gctgcgtcgc cgtgcggatc ccggcgccat acgtaaccgt gcggacgaat
     7801 cgtcgatgac gcgcgcaacg ctgatgtagt tgcgctcgac gtgagcgcga tgcacacgct
     7861 gccgctctcg tgcgcggcgc gagacagtcg cacgttctcg gttccttccg ggtcggctcc
     7921 tgccagcacg accactgcga gtccacccga tcgcaacaga gcttctgcag cacgcagtgc
     7981 gtgaagccgg ctccctggac gcagcagcac cggtcccgca tcccagaagg cgcccgccat
     8041 ggtaccgctg ccgtcgatcc acacggcccg ttctccgcca gccacagcgg agcggcacgc
     8101 cgagcgcagg acggccgtgg cgccgccacc tggagtccag acggacagcc gtccgcgcgg
     8161 gaatcctccg ctcggaaaga tccgatccag ctcgtcgatc ccggttgcca caacctcggt
     8221 ccggtgacgc tgaagcggcg ctgcgtccgg gaatttgagg tcgagcaact cacgtagatc
     8281 gcgtaatgcg gatgcggtgg ccatatcctt gactacaagt gtttatcaaa acaacgccag
     8341 ggaggctaga atataccgaa caaacaccga atgcaagact gggtccggtg gcgcctgagg
     8401 gccgaagaaa cggacccgac gcgcctgctg gagaggtgat cgggtactaa gttcatggct
     8461 ggccgtacgc agcagtcccg gatctggcga ccaacacacg aatgattctc gttacagcaa
     8521 tcgcggcgtt gttcgtcgcg cccgtcactg tcacatcggc tccagttaca ccaactcctg
     8581 ttacgcctgc gccggccatc acctacaacg gccgcgagcg tcagcttcgc gttgcgccgc
     8641 cgaggctgga tggtgatgtg acgatggacg gcaagctgga cgagccgcag tggcagcagg
     8701 cggcgcgact cacgggcttc tcgcagttcg cgccatccga tggtgtgccc gccgcagact
     8761 cgacggaaat tctggtatgg tattcgtcaa ctgcgatgta cttcggtgtg cgcgcgtatg
     8821 aatcacacga ggccgtgcat ccgaatctct ccgatcgcga tcacatagac gcggaagatc
     8881 gcatcgagtt tctgctgagc accttcaacg acggaagaca ggcgttcgtc ttccaggtga
     8941 atccactcgg cagccaggca gatggaacgc tggttgaaag tggcgcgtcc aacaacacgg
     9001 ccgggctcgg cacga
//
LOCUS       DATIMD010000453         2981 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5097222, whole genome shotgun sequence.
ACCESSION   DATIMD010000453 DATIMD010000000
VERSION     DATIMD010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2981
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5097222"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1034)
                     /gene="pyk"
                     /locus_tag="VLI40_10065"
     CDS             complement(<1..1034)
                     /gene="pyk"
                     /locus_tag="VLI40_10065"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HSU97566.1"
                     /translation="MPYTRRTKIVCTLGPSTATYDSIMAIAEAGMNVARLNFSHGTHA
                     DHAERIRTVRQIAEELGQPIAILGDLQGPRIRIGDLALSIPLKPGDDITLVHEGEEMG
                     GEIPVTYSQLASDVKVGDRILVDDGLIELVALEVRAPRVHARVIHGGVLRSHKGLNLP
                     GVQVSAPSLTEKDIADVTFAIEQELDYLALSFVRRAEDITSLRALLPPWMNIVAKIEK
                     DAALANIESIIRASDGVMVARGDLGVELPFEEVPVAQKRIISLSNQIGRPVITATQML
                     ESMVTNPRPTRAEASDVANAILDGTDAVMLSAETAAGAYPRLAVEAMSRIIAEIEQHP
                     PSRQLRDLRNR"
     gene            complement(1034..2146)
                     /gene="tal"
                     /locus_tag="VLI40_10070"
     CDS             complement(1034..2146)
                     /gene="tal"
                     /locus_tag="VLI40_10070"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HSU97567.1"
                     /translation="MDNHRLQALHDAGQSIWLDYIDRTMLHNGDLERRLTDDVLTGMT
                     SNPTIFQKALAEGNAYDDQLRAAPASLNVKQLFELVETQDVRDACDIFADVYHRTDGN
                     DGYVSIEVSADLANNAAGTIEEAHRLWTAVNRPNLLVKVPGTVEGAKAVRQLITDGIN
                     VNITLLFAVKAHERVIDAYIDGLEARLSRRLPIDRIASVASFFVSRVDTEVDKRLEAI
                     GGSARQYEGKAAIANAKMAYQLFVTKFGGARWNMLAAKGARVQRPLWASTSTKNPAYR
                     DVLYVETLIGPDTVNTMPPKTIEDFRDHGVVARTVDANMAQARADLAAIAQVGVSLDD
                     VTDTLLREGIASFEKSFDALSAGIKAKVAQLHSSKV"
     gene            complement(2115..>2981)
                     /locus_tag="VLI40_10075"
     CDS             complement(2115..>2981)
                     /locus_tag="VLI40_10075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSU97568.1"
                     /translation="DALLRLSRPFLLDRSVACASGILRPASGAELRDGEFTLRRGRGW
                     IDGCQTVEFLRNFVFLRMGWNRVASNIVVPSNPVMFKREHIFGMGGFDASEEVPAVDI
                     AMRLSRYLTDNGINARMPVIPDPVAWFIVGGDLKAAGQTRRAWLRGLRRALVRNSAMF
                     GNPEYGMFGVVALPYFWLGIIIAPMLELAGYFGLVLGLATGALDSSFAWAYLASVVGY
                     GILLSIWSVVFQATFFPGNGKQDSTARLLAYAVIESLGYRQILLFFRSAAYLVDRQPK
                     HTHGQPSPSGVT"
BASE COUNT          576 a          908 c          909 g          588 t
ORIGIN      
        1 cgattgcgca gatcgcggag ctggcgtgac ggcggatgtt gctctatctc ggcgatgatg
       61 cgactcatcg cctcgactgc cagtctcgga taggctcccg cggcggtttc agcggacagc
      121 atcacagcgt cggtgccgtc caggatggca ttcgcgacgt cactcgcctc ggcgcgtgtg
      181 ggacgcggat tggtcaccat cgactccagc atctgcgtcg ccgtgattac cggtcggcca
      241 atctgattgg acagcgatat gatccgcttc tgtgcgaccg gaacttcctc gaacggcaac
      301 tcgacaccga gatcaccacg tgctaccatg actccgtcgg acgcgcgaat gatcgactcg
      361 atgttggcaa gcgccgcatc cttctcgatc ttcgcgacga tgttcatcca tggcggcaac
      421 agcgcacgga gcgacgtgat gtcctcggcg cgccgcacaa agctgagcgc gagatagtcc
      481 agctcctgct cgatcgcgaa cgtcacgtcc gcgatgtcct tttcggtgag agagggcgcc
      541 gacacctgta caccgggcag gttcaatccc ttgtgactgc gaagaacgcc accgtgtatg
      601 acgcgcgcgt ggacgcgcgg cgcccgcacc tcgagcgcca cgagctcgat cagaccatca
      661 tcgaccagaa tgcggtcgcc gaccttgacg tcgctggcga gctgtgaata cgtaaccgga
      721 atctcgccgc ccatctcctc gccttcatgc acgagcgtta tgtcgtcacc cggcttgagt
      781 ggaatgctca atgcgagatc gccgatacga atgcgcgggc cctgaagatc gccgagtatc
      841 gcgatcggct ggccgagctc ttcggctatc tgacgaaccg tgcggatgcg ctccgcgtga
      901 tcggcgtgcg taccatgaga gaaattcaga cgcgcgacgt tcattcccgc ttctgcgatc
      961 gccatgatcg agtcgtacgt cgctgtggat ggaccgaggg tgcagactat tttggtgcgg
     1021 cgagtatacg gcatcagacc ttgctggagt gaagctgcgc gaccttggcc ttgatgcctg
     1081 cgctcagggc gtcgaatgat ttttcgaagc tcgcgatgcc ttcgcgcaga agtgtatcag
     1141 tgacgtcgtc gagactgacg cccacctggg cgatggctgc gagatccgcg cgggcctgcg
     1201 ccatgttggc gtcaactgtg cgcgcaacca cgccgtggtc gcggaaatcc tcgatcgtct
     1261 ttggcggcat cgtattcacc gtgtcgggtc cgatgagggt ctcgacgtaa agcacatcgc
     1321 gatatgccgg attcttggtg ctggtgctcg cccacagcgg acgttgcacg cgcgcgccct
     1381 tggctgcaag catattccat cgcgcgccgc cgaattttgt gacgaagagt tgatacgcca
     1441 tcttcgcgtt ggcgatcgcg gccttgccct cgtactggcg tgcgctgcca ccgatcgctt
     1501 cgagtcgctt gtcgacttcg gtatccacac ggctgacgaa gaaactggcg accgaagcga
     1561 tgcgatcgat cggcaagcgc ctggacagac gcgcttcgag gccgtcgatg tatgcatcga
     1621 tgacacgctc gtgcgccttc accgcgaaca gcagcgtgat gttgacattg atgccgtccg
     1681 tgatgagttg ccggacggcc ttggcgcctt ccacagtgcc tggaaccttc acgaggagat
     1741 tgggacggtt gaccgccgtc cagagccgat gcgcttcctc gatcgttccc gccgcgttgt
     1801 tcgccagatc tgcggagact tcgatcgaca cgtagccgtc gttaccatcg gtgcggtgat
     1861 agacatccgc gaatatgtca cacgcgtcgc ggacgtcctg cgtctcgacc agctcgaaca
     1921 actgcttgac attgagcgat gctggagcgg cgcgaagctg atcgtcgtac gcgttgcctt
     1981 cggcgagcgc cttctggaag atggttgggt tggacgtcat accggtgagc acgtcgtcgg
     2041 tcaggcggcg ctcgagatca ccgttgtgca gcattgtgcg atctatatag tcgagccaga
     2101 tcgactggcc ggcgtcatgt aacgcctgaa ggcgatggtt gtccatgggt gtgtttgggt
     2161 tgacggtcaa ctagatacgc agcggagcgg aagaacagga gaatctgacg atatcccagc
     2221 gattcgatca cggcatacgc gagcagcctt gcggtgctgt cctgtttgcc gttaccggga
     2281 aagaacgtgg cctggaatac cacgctccat atagatagga gtatgccgta tccgaccacc
     2341 gacgccaagt aggcccaggc aaatgacgaa tcgagtgcgc cggttgcgag tcccagaacg
     2401 aggccgaaat agcctgccag ctccagcatc ggagcaataa tgattccgag ccagaaatac
     2461 gggagcgcga cgacgccaaa catcccgtat tccgggttgc caaacatcgc ggagttccga
     2521 accagagcgc ggcgcaatcc gcggagccac gctcggcgcg tctggccagc ggctttcaga
     2581 tcccctccga cgatgaacca tgcgacagga tccggtatca cgggcattct ggcattgatg
     2641 ccgttgtcgg tcagataccg tgacaggcgc atggcgatat ccaccgccgg cacctcctcg
     2701 ctggcgtcga agccgcccat cccgaatatg tgctcgcgct tgaacatcac cggattgctc
     2761 ggcaccacga tattactcgc gacgcgattc cagcccatcc gcaggaacac gaaattgcgc
     2821 aggaattcga cagtctggca gccgtcgatc cagccgcgtc cgcggcggag tgtgaactct
     2881 ccatcacgca gctcagcgcc gcttgcagga cgaagaatgc cgctggcgca cgccaccgat
     2941 cggtccagca ggaacggacg cgatagccgg agcagcgcat c
//
LOCUS       DATIMD010000454         1728 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5672388, whole genome shotgun sequence.
ACCESSION   DATIMD010000454 DATIMD010000000
VERSION     DATIMD010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5672388"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..841)
                     /locus_tag="VLI40_10080"
     CDS             complement(<1..841)
                     /locus_tag="VLI40_10080"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HSU97569.1"
                     /translation="MSTDSNRPDRSQLASNTGDLPTDAFRKHGHEMIDWIAEYLEDPA
                     RYPVLSQSRPGDTIAALPRSAPATGEDMTDILADFERVIMPGITHWNNPSFFAYFAIS
                     SSIPGILGELLATALDTNAMLWKSSPSATELEMVVLDWLRQALGLPAPWFGVINDTAS
                     ISTMLALVVAREAANLGIREKGIAGRDDVPILRVYCSEQAHSSVDKGAITVGYGHDNV
                     VHIPTDDQFRMRPEALAQAIAEDRKRGFRPVAVVATIGTTSTTSIDPVPAIADICERE
                     GIWL"
     gene            1014..1541
                     /locus_tag="VLI40_10085"
     CDS             1014..1541
                     /locus_tag="VLI40_10085"
                     /inference="COORDINATES: protein motif:HMM:NF019241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSU97570.1"
                     /translation="MAAPLPQDLQVSALRSRLTGALPLMMQAAIEPFDDESIWWQPAP
                     GVNPVAVLALHCAGNLRHFIGRHIAGTDYVRNRPEEFDASRRLGKHEILDEFRRAIDE
                     VRVAMDSLSTEDYAAPSRDPDGRHWTVYEDFVSATVHLALHTGQAVQLAKLKGYKLSD
                     RVWGEAHAASGASRV"
     gene            1534..>1728
                     /locus_tag="VLI40_10090"
     CDS             1534..>1728
                     /locus_tag="VLI40_10090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97571.1"
                     /translation="MSDIFTITALGVSIGLLLLGIGLGWLAASSRQKSVLGTLHSKIA
                     DLTARYEIRSAEAARLMLRVE"
BASE COUNT          311 a          503 c          575 g          339 t
ORIGIN      
        1 gcagccagat tccttcgcgc tcgcagatgt cggcgatggc gggcacgggg tcgatgctcg
       61 tggtgctggt cgttcctata gttgcgacga cggcgacggg tctgaagccg cgctttcggt
      121 cctccgctat cgcttgggcg agcgcctcgg gccgcatcct gaactgatcg tcagtcggaa
      181 tgtggacgac gttgtcgtgt ccgtagccaa ctgtgatcgc tcccttgtcc acagatgagt
      241 gggcctgttc ggaacagtaa acgcgcagta tggggacatc atcgcgccct gcgatgccct
      301 tctccctgat tccaagattt gctgcctcgc gcgccacgac cagtgcgagc atggtcgaga
      361 tgctggcggt gtcgttgatc acgccgaacc acggagccgg aaggccgagt gcctgccgga
      421 gccagtcgag caccaccatc tccagctcgg tcgcgctcgg gctggacttc catagcatcg
      481 cgttggtatc cagcgccgtg gcgagcagct cgccgagtat gccggggatg gaggagctga
      541 tggcgaagta ggcgaagaag gaggggttgt tccagtgggt gatccccggc atgatgacgc
      601 gctcgaagtc tgcgaggatg tcggtcatgt cctcgcccgt tgccggtgcg gaccttggta
      661 gcgctgcgat cgtatcgccc gggcgcgatt gtgacagaac ggggtaccgg gcggggtctt
      721 ccaggtattc agcgatccag tcgatcattt cgtgaccgtg ctttcggaac gcgtcggtcg
      781 ggagatcgcc ggtattcgag gccagctggc tacgatcagg acggttggaa tcggtgctca
      841 ttatcgattc gaaacggtgc ggggaaaatt ttgcgaaaca agtatcggat ccaatgttac
      901 gtaacgtgac ctcgaactgt cgtggtttac gtgcccgagc gacgcaggtg agcgtcgctg
      961 agccagacgg cgtggatgca tccgcgcctt ccaattccaa aaatggcaag acgatggcag
     1021 ctcctctccc tcaggacctt caggtatccg cgctgcgcag ccggctcacc ggcgcgcttc
     1081 cattgatgat gcaggcggcg atcgagccgt tcgacgacga gtcgatctgg tggcagccgg
     1141 cacccggcgt caatcctgtc gcagtactgg cgttgcactg cgccggcaac ctcagacact
     1201 tcataggccg gcacatcgcg ggcacggact acgttcgcaa taggccggaa gaattcgacg
     1261 cgtcgcgccg gctcggcaaa catgagatcc tggacgagtt caggcgcgcg atagacgagg
     1321 tgcgcgttgc gatggattcg ctatcgacgg aagattacgc ggctccgtcg cgcgatccgg
     1381 acggacggca ctggacggtg tacgaggatt tcgtcagcgc gacggtccat ctggcactgc
     1441 atacaggaca ggctgtgcag ctcgccaagc tcaagggtta caagctgagc gatcgtgtat
     1501 ggggcgaggc gcacgccgcg tcgggagcgt cgcgtgtctg acatcttcac aatcaccgcg
     1561 ctcggcgtct ccatcggcct cctgctgctg gggatcggac ttggctggct cgccgcatcg
     1621 agtcggcaga aatccgtgct cgggacgctg cacagcaaga tcgcggatct cacggctcgc
     1681 tacgagatcc ggagcgcaga agctgcgcgg ctcatgctgc gcgtggaa
//
LOCUS       DATIMD010000455         3818 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3073812, whole genome shotgun sequence.
ACCESSION   DATIMD010000455 DATIMD010000000
VERSION     DATIMD010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3818
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3073812"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..559)
                     /locus_tag="VLI40_10095"
     CDS             complement(<1..559)
                     /locus_tag="VLI40_10095"
                     /inference="COORDINATES: protein motif:HMM:NF014654.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HSU97572.1"
                     /translation="MASSVAERTAADDGEQHGFIVELPEFSGPLDLLLSLIRDEQVDI
                     YDIPIARIAEQFLARIHGMSIDDAADYLEMAARLLRIKAQMLLPRPEGMEAWEDPRAE
                     LVRRLLEYQQVREVVDVLERLGDDRRNRFARSYVQPQVEQIDRDDRPFAATLADLFAA
                     VDRVLRQAKRPLVHDVIPRALDVDGA"
     gene            complement(580..1176)
                     /locus_tag="VLI40_10100"
     CDS             complement(580..1176)
                     /locus_tag="VLI40_10100"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HSU97573.1"
                     /translation="MKNGDMTAYQLGRLTWNPLKHIDPFMTILLPIFLWISHAPILGG
                     AKPIPVNPRNYRNFKTGDITVSLAGVTTNVILAFVFAAVLPLLYFPGRAFPNATNAFA
                     LMQQMCVYGIWINLILAAFNLLPIPPLDGSHVFKYVLPPAWALSYERISRFGLLIIYA
                     LLFLGGPLLTWWLFPAIAGTRFLVGVSIGFLLPGVGGL"
     gene            1351..1599
                     /gene="rpsT"
                     /locus_tag="VLI40_10105"
     CDS             1351..1599
                     /gene="rpsT"
                     /locus_tag="VLI40_10105"
                     /inference="COORDINATES: protein motif:HMM:TIGR00029.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HSU97574.1"
                     /translation="MPNIASAKKNMRKSRAAQVRNRAQRSTLRTALKKARAENASSEA
                     MAEAVTLLDRAARKGLVHKNAAARRKSRMAKAAKKAAA"
     gene            1708..2511
                     /locus_tag="VLI40_10110"
     CDS             1708..2511
                     /locus_tag="VLI40_10110"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSU97575.1"
                     /translation="MPHSQPDSTLRFSDRVENYVRYRPGYPAEVIDVLARETGLTPAS
                     EIADVGSGTGISSELFLRNNNTVFGIEPNAEMREAAERLLAAYPRFHSVPARAEATAL
                     PNASIDYVTAGQAFHWFDPQLARMEFARILRPGGWAVLLWNARRLDSTPFLRDYDAML
                     ERYGTDYRQVRHQNLDVARLRVLFDGAIGQAFQLRTLYNEQRFDFEGLRGRLLSSSYT
                     PTANHPGYLPMLRELKRIFDEHAENGSVAIEYDTEIYFGHVAHARPFAE"
     gene            complement(2547..3134)
                     /locus_tag="VLI40_10115"
     CDS             complement(2547..3134)
                     /locus_tag="VLI40_10115"
                     /inference="COORDINATES: protein motif:HMM:NF017496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HSU97576.1"
                     /translation="MYMAVATTHPDEHRHWTAADLRDIPDDRNRYEIIDGELFVTPSP
                     SWRHQDLAGLLFSLLGPYLEAHQLGKVLLAPADVELSDDTVIEPDLFVVPLVEGKPPA
                     RWKDVGRLLVAIEILSPSTSRVDRTVKRRRYQREGVPEYLIVDGDAHVVERWRPADER
                     PEIISERLEWQPDPSLLPLVIDLPLLFARALGASG"
     gene            3498..3701
                     /locus_tag="VLI40_10120"
     CDS             3498..3701
                     /locus_tag="VLI40_10120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97577.1"
                     /translation="MSDNTVCNRIAQSLNAATGTSGLTRKLYVVKVGSYYTAQDPDHP
                     SGEWWPTVSLDKLYHVLGVVLAP"
BASE COUNT          794 a         1198 c         1132 g          694 t
ORIGIN      
        1 tcgcgccatc cacgtcgagc gcgcgcggaa tcacgtcgtg caccagcggc ctctttgcct
       61 gacgcagcac acgatccaca gcggcgaaca gatcggcgag cgtggctgcg aacggacggt
      121 catcgcggtc tatctgctcg acctgcggtt gaacgtagga gcgcgcgaac ctgttgcgac
      181 gatcgtcccc gagacgctcg agcacgtcga ccacctcgcg cacctgctga tactcgagaa
      241 gccgccgcac cagctcggcg cgcggatctt cccacgcttc catgccttcg ggacgcggaa
      301 gcagcatctg cgccttgatg cggagcagac gggcggccat ctcgagatag tccgccgcgt
      361 cgtcgatgct cataccgtgg atgcgcgcca gaaactgttc cgctatgcgc gcgatcggaa
      421 tgtcgtagat gtccacctgc tcatcgcgaa tgagcgacag cagcaggtcc agcggtccgg
      481 agaattcagg gagctcgacg atgaaaccgt gctgctcgcc atcgtcagct gctgtacgct
      541 cggctacgct cgatgccacg ctcgatgcct gggccgacgt cacagcccgc ccactcccgg
      601 aaggagaaat ccgatcgaca cgccgaccag gaaacgcgtg cctgcgattg ccggaaacag
      661 ccaccacgta agcaacggac cgcccaggaa cagcaatgcg tagatgatca gcagaccgaa
      721 gcggctgatc cgctcatacg acagtgccca cgccggcggc aggacgtact tgaagacatg
      781 cgacccgtcc agcggcggga tgggcaacag gttgaacgcg gcgagaatca ggttgatcca
      841 tatgccgtat acgcacatct gctgcatcag ggcgaacgcg ttcgtcgcgt tcgggaacgc
      901 gcggcccgga aagtagagca gcggcaatac tgccgcgaaa acgaaggcga ggatcacatt
      961 tgtggtgaca ccggccaacg acaccgtgat gtccccggtc ttgaaattcc ggtaattccg
     1021 cgggttgacg ggtatgggtt tggccccgcc gaggattggc gcgtgcgaga tccagaggaa
     1081 gatcggaagc aggatcgtca tgaacggatc gatgtgcttc agcgggttcc acgtgaggcg
     1141 gccgagctgg taggcggtca tgtccccgtt cttcatggct acccacccgt gagcgtactc
     1201 gtgggcgacc atggaaaaga gcaggactgg ggctactaat aggaattgag cgacgctatc
     1261 caacttgact cggttatggg gatgatctaa tttacgaggc tagtcgcgaa tcggaaacgc
     1321 tttcgcttca tcgagttaac caaccccgtc atgccgaata tcgcgtccgc gaagaagaat
     1381 atgcggaagt ctcgtgccgc gcaggtccgt aatcgtgcgc agcgctcgac cctccgtacc
     1441 gccctcaaaa aggcgagagc cgaaaacgct tcgtccgagg ctatggccga agccgtaacg
     1501 ctgctcgatc gcgcagcgcg caagggtctc gtacacaaga acgccgccgc gcgccgcaag
     1561 agccgcatgg ccaaggccgc gaagaaagca gccgcgtagc agggcgcggg ttcttccgcg
     1621 cctcgccaat cgaggcgcga tcggaattgg atgaacgtgc gcggatcgtt ccgcccctga
     1681 cccactcagg cgtgatcgga attggcaatg ccccactccc aaccggattc cactctccgt
     1741 ttctccgatc gcgtggagaa ttatgtccgt taccgcccgg gttatccggc cgaagtaatc
     1801 gacgttctcg cacgtgaaac gggcctcacc ccagcatccg aaatagctga cgtaggctcg
     1861 ggcaccggca tctcgtccga gctattcctg cgcaacaaca acacggtgtt cggtatcgag
     1921 ccaaacgccg agatgcgcga ggccgctgag cggttactgg cagcgtatcc gcgctttcac
     1981 agcgtgcctg cgcgcgccga agctactgcg cttcccaacg cctcaatcga ttatgtaacc
     2041 gcgggccagg cgttccactg gttcgatccg cagcttgcca gaatggaatt cgcacgcatt
     2101 cttcgtcccg gtggatgggc cgttctgttg tggaacgcgc gacgcctcga cagcactccg
     2161 tttcttcgtg attacgatgc gatgctggag cggtacggca cggactatcg tcaggtccgc
     2221 caccagaacc tcgacgtggc gcgtctgcgc gtgctgttcg acggagcgat tgggcaggcg
     2281 tttcagcttc gcacgcttta caacgagcaa cgtttcgatt tcgaaggcct gcgtggccga
     2341 ttgctctcgt cgtcatacac accgacggcc aatcacccag gctacctgcc gatgttgcga
     2401 gagctcaaaa gaatcttcga cgaacatgcg gagaacggct cggtcgcgat cgaatacgac
     2461 acggagatat acttcggtca tgtcgcgcac gctcgcccat tcgcagaatg acgagcggct
     2521 gacaacttac tgaatcgatc cgcgattcag ccgctcgctc caagcgctcg cgcgaatagc
     2581 agtggcagat cgatcacgag aggaagaagt gacggatcag gctgccattc gagccgttcg
     2641 ctgatgatct ccggccgctc gtccgctggc cgccagcgct ccacgacgtg cgcatcgcca
     2701 tccacgatca agtattccgg cacgccttca cgctggtagc gccgccgttt caccgtccgg
     2761 tccacccggg acgtgctcgg cgagagaatt tcgatggcga cgaggagccg accgacatcc
     2821 ttccatcgcg cgggcggctt cccttcaacg agaggaacca cgaacaagtc cggctcaatg
     2881 acggtgtcgt cagacagctc gacatcagcg ggagccagca aaaccttgcc cagctggtgc
     2941 gcttcgagat acggaccgag caaggagaac agaagcccag ccagatcctg atgcctccac
     3001 gacggcgaag gcgtcacgaa cagctcgccg tcgatgatct cgtagcggtt ccggtcgtcc
     3061 ggaatgtcac gaagatcggc tgcggtccag tgcctgtgct cgtcaggatg agtcgtcgca
     3121 acggccatgt acatacaata ggctcctcgg cggaggcgtg gcaagtgcac acgctcccca
     3181 atgtcggggc ccgcgggcgc ttcggtggta gcaggcgtct tgcgccacca gcatcttgct
     3241 acctggtaaa ccgctgacga cattctttcg aattccgagg ctgtgccgtc caacgtcttc
     3301 tgattttact ggcggttttc acgattggcg caagggcggc gtattcgcaa accggatcca
     3361 cctgtcgcgc atctgacaca ggtgccgcac gcatgcttga ctatgtcagc caactcgtca
     3421 catcgacgga accagtacgc gtgcaggttc gtaacagtct cggcttgccg gcaacccgcg
     3481 cgtctgacgt tagtctcgtg agcgacaaca cggtgtgcaa caggattgcc cagagcctga
     3541 acgcggccac tgggacttcg gggcttacgc gaaagctgta tgtcgtaaag gtcggatcgt
     3601 actatacagc gcaggatccg gatcatccat ctggtgaatg gtggcctaca gtatcgctcg
     3661 acaagctgta tcacgtcctc ggcgttgtcc tcgcaccata gccctcaaca gccgccattg
     3721 ctggcgacca cgcgagcgcc gcaacgatga gccgtcagtc aacagaggca gccacccagt
     3781 cgcctaaaac gtcgacagct ctccgccgca gcgctcgc
//
LOCUS       DATIMD010000456         4265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3651351, whole genome shotgun sequence.
ACCESSION   DATIMD010000456 DATIMD010000000
VERSION     DATIMD010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4265
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3651351"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..488)
                     /locus_tag="VLI40_10125"
     CDS             complement(<1..488)
                     /locus_tag="VLI40_10125"
                     /inference="COORDINATES: protein motif:HMM:NF014589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase N-terminal
                     domain-containing protein"
                     /protein_id="HSU97578.1"
                     /translation="MYTLGINAAFHDPAACLVRDGDVVAAAEEERFTKIKHGKRPVPF
                     STWELPFHAIDFCLSRAGIDLRDVDHVAYSFEPAQLLGTHTGDATIPIPLDPAQYSER
                     EQGASPWEPLFLSHILNAPRQLVDGAPLHLEKRFRDAYWNGSFEWHFLDHHACHAASA
                     FLA"
     gene            complement(528..1676)
                     /locus_tag="VLI40_10130"
     CDS             complement(528..1676)
                     /locus_tag="VLI40_10130"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HSU97579.1"
                     /translation="MTGSVHDWATASRILCIRLDTIGDVLMTTPAIRAVREAGDGRTV
                     TLLTSSSGATIAPLIPCIDDVITYDAPWLKTPGQRETSDVDHAMIRALRAARFDAAII
                     FTVFSQSALPAALMSFLADIPLRLAHVRENPYELLTTWVRDTEPDSGIRHEVERQLAL
                     VQAVGYQTSDTHLALRVTRAMRRDIQALLSSLGIGPATPWIVLHPGATAPSRRYPPKQ
                     FAAAVHPLVAERGYRVLVTGGAAEAALVSEMCHRIGSHAIDLAGRLDIAQLAALVDAA
                     PLLITNNTGPAHIAAAVGTPIVDVYALTNPQHTPWRVPARVLSHDVPCRNCFKSVCPL
                     GHNNCIRGIAPHDVTRAALDLLAERRASKPSTANKHAPAATDHWPAPL"
     gene            complement(1673..2245)
                     /locus_tag="VLI40_10135"
     CDS             complement(1673..2245)
                     /locus_tag="VLI40_10135"
                     /inference="COORDINATES: protein motif:HMM:TIGR01662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HSU97580.1"
                     /translation="MSRRVVLLDKDGTLVENVPMNADPARIRLTPGVPDALLRLSAAG
                     FRIAVVSNQSGVAFGHFTEEALVDVEQRMRELLAQFAIELDGFFYCPHHPDAVVERYR
                     CVCDCRKPAPGLLATAATRFHASPERIWMVGDILDDVEAAHRAGCRAILFDSGGETEW
                     MVTPLRRPEFVVTRFERVADIILGAPRNAA"
     gene            complement(2242..3534)
                     /locus_tag="VLI40_10140"
     CDS             complement(2242..3534)
                     /locus_tag="VLI40_10140"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSU97581.1"
                     /translation="MTNKRIAVITEHASPLAALGGTDCGGQNVYVRELAIELARRGHY
                     VDVFTRRETADAATIVQFAPRVRVVHVEAGPPRCLPKEDLLPFMPEFADFMIDFAELT
                     DETYDVLHANFWTSGVAAMRVKRATGTPVVITFHALGRVRRMHQGPDDGFPAERGDIE
                     EDLVAEADAVIAECPQDAADLMELYHAPRNKLRVVPCGVDCRRFAPVDRRKARSVLGL
                     DDDAPTLLQLGRMVPRKGIADVVRAVGSLRHTHHIPARLLVVGGATNVPDESATPHLA
                     DLRRVAQEHDVADAVDFVGRRGGDQLRYYYCAADLFVTTPWYEPFGITPLEAMACGTP
                     VIGSSVGGIKHTVVDGETGILVPPRDPEAIASAAATLLGDSTFWQRMSRNAIRRVHSC
                     FRWGDVVAEIDNLYNHVIADRRRELPVDVQIAASELSA"
     gene            complement(3531..>4265)
                     /locus_tag="VLI40_10145"
     CDS             complement(3531..>4265)
                     /locus_tag="VLI40_10145"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSU97582.1"
                     /translation="SARNYTQDQFELLTDAQQALPRIYLEHDPPLDHPFAQRHVVTDP
                     DVLIVHVTAWNAIMWDSGNSPTRVIEHGVLVPDDVRSTGELPRGICAINNLRTRGRRM
                     GADVFMAAREQVPIDLVGMDAESVGGIGEIAPPTLAEFQARYRFAFSPIRRTSLGLAL
                     IEAMMIGLPVIGLATCELASTIENGKSGFVDTSLARVIAAAQELVRDRNEAQRLGNCA
                     RRVARERYNIARFTRDWDTTFREVAA"
BASE COUNT          757 a         1329 c         1373 g          806 t
ORIGIN      
        1 gcgagaaaag cactcgccgc gtgacacgcg tgatgatcca gaaagtgcca ctcgaacgac
       61 ccgttccaat atgcatcgcg gaatcgtttt tccagatgca gcggggcgcc atcgacgagc
      121 tggcgcggcg cgttcaggat atgcgagagg aacaacggct cccatggact cgcgccctgc
      181 tcgcgttcgg aatattgcgc cggatcgagc gggatgggga ttgtcgcatc gcccgtgtgc
      241 gtaccgagca gctgagcagg ctcgaacgag tatgccacgt gatcgacgtc ccgaagatcg
      301 attccagcgc gtgagaggca gaagtcgatc gcgtggaacg gcagctccca cgtagagaac
      361 ggcaccgggc gcttgccgtg cttgatcttg gtgaaccgct cttcctccgc ggcggcgacg
      421 acgtcgccat cgcgcacgag acaggctgcg gggtcgtgaa atgctgcgtt gattccaagt
      481 gtgtacatcg ttccgtctcc atcctgtcgc gattgaatga gtatccgtta cagtggtgcc
      541 ggccagtggt ctgtggcggc gggtgcgtgc ttgttggctg tcgagggctt gcttgctcgc
      601 cgttcagcga gaaggtcgag cgcggcgcgt gtcacgtcgt gcggtgcgat accgcgaatg
      661 cagttattat ggcccagcgg gcagacactc ttgaagcagt ttctgcacgg cacgtcgtgg
      721 gacagtacgc gcgccggcac ccgccacggc gtgtgctgcg ggttggtaag cgcatataca
      781 tcgacgatcg gtgtgcctac cgcggcggcg atgtgcgcag gtcccgtatt gttggtgatg
      841 agcagtggcg cggcatctac cagcgccgcg agctgcgcga tgtcgagcct tccggccaga
      901 tcgatggcgt gcgacccgat gcgatggcac atctcgctga cgagcgcggc ctcggccgca
      961 ccaccggtca cgagcactcg atatccccgc tcggcaacca gtggatgaac cgctgccgcg
     1021 aactgtttgg gtggatagcg cctcgatggc gccgttgcgc cggggtgcag tacgatccac
     1081 ggagtcgcgg gcccgatccc cagactcgac agcagcgctt gaatatcccg tcgcattgcg
     1141 cgtgtcacgc gcagcgccag gtgcgtatcg gaagtctggt aacccacagc ctggacgagc
     1201 gcgagctggc gctcgacttc gtgtctgata ccggagtccg gctccgtatc tctcacccac
     1261 gtcgtcagca gctcgtacgg gttctcgcga acgtgtgcca gacgcagcgg gatgtcggcg
     1321 agaaaactca tcaatgcagc cggcagcgcg ctctgcgaga acaccgtaaa gatgattgcg
     1381 gcgtcgaagc gggcagcgcg cagcgcgcgg atcattgcgt gatccacgtc gctcgtctcg
     1441 cgttgcccgg gagtcttgag ccacggtgcg tcgtacgtga ttacgtcgtc gatgcacggt
     1501 atcagcggcg caatcgtcgc gccggacgaa gaagtaagca gcgttaccgt gcgcccgtcg
     1561 ccggcctccc tgactgcgcg gattgcaggt gtcgtcatca gcacgtcgcc gatggtgtcg
     1621 agccggatgc acaggatccg gctcgccgtt gcccagtcat gtacgctgcc tgtcacgcgg
     1681 cgttccgcgg tgcgccgagg atgatgtcag ccacccgctc gaaacgtgtc acgacgaact
     1741 caggtctacg cagtggtgtg accatccact ccgtctcacc acccgaatcg aacagaattg
     1801 cgcgacagcc ggcgcggtgc gcagcctcga cgtcgtcgag gatgtcgccg accatccaga
     1861 tacgctccgg tgatgcgtgg aatcgagtag ccgctgttgc gagaagtccc ggggccggtt
     1921 ttctgcaatc gcagacgcat cggtatcgct cgacgacggc atcggggtgg tgcggacagt
     1981 aaaagaatcc gtccagctca atggcaaact gcgcgagcag ctcgcgcatc cgttgctcga
     2041 catccacgag ggcctcttct gtgaagtggc cgaacgcgac accggactga ttggacacta
     2101 ccgcgatgcg gaatcccgcg gctgacagcc gcagcagcgc gtcgggcacc cctggcgtga
     2161 ggcgaatcct tgctggatcg gcgttcatcg gcacgttctc gacgagcgtg ccgtccttgt
     2221 ccagcagtac gacccggcgg ctcacgcgct caactcgctt gccgctatct gtacgtcaac
     2281 tggaagctct cgacgtcggt cggcgatgac gtggttgtag agattgtcga tttcggcgac
     2341 cacgtcgccc cagcggaagc acgaatggac gcgcctgatg gcattgcgtg acattcgttg
     2401 ccagaacgtg gagtcgccca acagtgttgc agctgcgctc gcgattgctt ccgggtctct
     2461 cggcggtacg aggattcccg tctcgccgtc cacgaccgta tgcttgatgc ctccgacact
     2521 ggatccgatc acaggcgtgc cacacgccat tgcttcaagg ggggtgatgc cgaacggctc
     2581 gtaccatgga gtcgttacaa acagatctgc ggcgcaatag tagtatcgaa gctgatctcc
     2641 gccacggcgc cccacgaagt cgactgcgtc cgcgacgtcg tgctcctgcg cgacgcgtct
     2701 gaggtcggcc aggtgcggag tcgccgattc gtccggaaca ttggtcgcgc cgccgacgac
     2761 cagcagacgg gcggggatgt ggtgcgtgtg acgcagactc ccgacggccc gtacgacgtc
     2821 cgcgattccc ttgcgtggga ccatgcggcc aagctgcagg agagtcggcg catcgtcatc
     2881 gagccccaga acgctgcggg ccttgcgtcg atcaacgggc gcgaagcggc ggcagtccac
     2941 gccgcatggc acaacgcgca gcttgttgcg cggcgcgtgg tagagttcca tgagatcggc
     3001 ggcgtcctgc ggacattccg cgattactgc atccgcctct gcgacgaggt cttcctcgat
     3061 gtcgccacgc tcggctggaa agccgtcatc cggcccctgg tgcatgcggc gcacacgtcc
     3121 gagcgcatga aaggtgatta ctaccggagt gcctgtcgct cttttcacgc gcatcgccgc
     3181 aacaccggac gtccagaagt tggcgtgcag cacatcgtac gtctcgtccg tcagctcggc
     3241 gaagtcgatc atgaagtcgg cgaactccgg catgaacggc agcagatcct ctttcggaag
     3301 gcacctcggc ggccccgcct cgacgtggac gacgcggacg cgcggtgcga attgcacgat
     3361 cgtcgcagcg tccgccgttt cacgcctcgt gaagacgtcc acgtaatgac cgcggcgtgc
     3421 gagctctatc gcgagttccc tgacgtaaac gttctggccc ccgcaatcag tgccgcccag
     3481 tgcggcgagc ggggaagcat gctcggtgat aactgcgatg cgcttattgg tcatgcggcc
     3541 acctcccgga atgtcgtgtc ccaatcgcgt gtaaagcgag cgatattgta tcgctcccgt
     3601 gcgacgcgtc tcgcacaatt accaagtcgt tgcgcttcgt tcctgtcccg caccagttcc
     3661 tgcgccgcgg ctattactcg agcaagcgat gtgtcgacaa atcccgactt gccgttctcg
     3721 atcgtcgacg caagctcgca ggtcgcgagg cctattaccg gcaatccgat catcatcgcc
     3781 tcgatgagag caaggccgag actggttcgc cggatcgggc tgaacgcgaa ccggtagcgc
     3841 gcctggaact ccgcgagggt gggcggagcg atttccccga tacctccaac agattcggcg
     3901 tccatgccta cgaggtcgat gggcacctgc tcgcgtgccg ccatgaatac gtcagcgccc
     3961 atgcggcggc cgcgcgtacg gaggttgttg atcgcgcata ttccgcgtgg cagctcgccc
     4021 gtgcttcgaa cgtcgtccgg aacgagaaca ccgtgttcga tcacgcgtgt gggcgagttg
     4081 ccggaatccc acattatcgc gttccacgcg gtgacgtgca cgatcagtac gtccggatcc
     4141 gtgaccacat gccgctgcgc gaaggggtga tcgagcggcg gatcgtgctc gagatatatg
     4201 cgagggagtg cttgctgcgc atccgtgagc agctcgaact ggtcctgcgt gtagttgcgc
     4261 gccga
//
LOCUS       DATIMD010000457         1842 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5098981, whole genome shotgun sequence.
ACCESSION   DATIMD010000457 DATIMD010000000
VERSION     DATIMD010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5098981"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            38..448
                     /gene="queF"
                     /locus_tag="VLI40_10150"
     CDS             38..448
                     /gene="queF"
                     /locus_tag="VLI40_10150"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HSU97583.1"
                     /translation="MPKPQLLEVFPNPYADRDYEIHMDCPEFTSLCPLGGIEGDASDL
                     TALEGGAPDFATIRITYFPADSCVELKSLKLYLWSFRNDGIFYERAVNRILDDLVERV
                     KPRWMRVVGDFNLRGGIKSVITASNGIRPDTRNL"
     gene            complement(456..950)
                     /locus_tag="VLI40_10155"
     CDS             complement(456..950)
                     /locus_tag="VLI40_10155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97584.1"
                     /translation="MTSNLLRHLAAVAAIGAVCASCATQFYDSPNTLGVLPAPKPVPL
                     WLGAIHGTGTTGVSGAAAVTPSPTPGWTHVLISVDNSVAGGEYGWSLKSGSCAAQGNV
                     VGPTDRYGDFIVHADGSGAAEATVPETLSPSASYAVVATPAASATASATAPAACADLV
                     LRSM"
     gene            1032..1415
                     /locus_tag="VLI40_10160"
     CDS             1032..1415
                     /locus_tag="VLI40_10160"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU97585.1"
                     /translation="MSSAFFGLRTVIYHVSDLQAAKEWYTLATGIEPYFDESFYVGFN
                     IGGFELGLDPDPSSGMSGVGGTTAYWGVASVARALVDLVEAGATLKAPATDVGDGIRV
                     GVVLDPFGNELGVIENPHFKLVEVS"
     gene            complement(1431..>1842)
                     /locus_tag="VLI40_10165"
     CDS             complement(1431..>1842)
                     /locus_tag="VLI40_10165"
                     /inference="COORDINATES: protein motif:HMM:NF045040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97586.1"
                     /translation="KKPEFTRVHPSLSKEADRVATLVHTLALAVDSAVMRHGRKIVDR
                     QFIQERMADAAIGIYMSTAVLSRTTWEIERAGSVDAVKPEMDCARLFLADRYRQVRRS
                     IRRISRNQDDRMKAVAERVLETSDAAPISPSDRM"
BASE COUNT          355 a          515 c          597 g          375 t
ORIGIN      
        1 cgacatgcac gggtttccta caaactagat ttgtagcatg ccaaagccgc aactgctcga
       61 agtgtttccg aatccttacg cggatcggga ctatgagatt cacatggact gtcccgagtt
      121 cacgtcgctc tgtccgcttg gcggaataga gggtgatgcg agtgatctga cagcgctcga
      181 aggcggtgcg ccggatttcg cgacgattcg gatcacgtac tttccggcgg actcgtgcgt
      241 ggagctcaag agcctcaagc tctatctgtg gagcttccgg aatgacggga tattctatga
      301 gcgcgcggtc aacagaatcc tggacgatct cgtggagcgc gtgaagccca ggtggatgcg
      361 cgttgtcggt gatttcaatc tgcgcggcgg gatcaagtcg gtgatcacgg cctcgaatgg
      421 aatcaggccg gacacgcgga atctgtgaac agcgattaca tcgatcgcaa gacaagatcg
      481 gcgcatgcgg ccggcgcggt agcagacgct gtagcagatg ctgccggagt cgcaactaca
      541 gcgtaggacg ccgacgggga tagagtttcc gggacggtcg cttcggcggc gccggatcca
      601 tctgcgtgaa caatgaaatc tccgtacctg tcggtcgggc cgacgacgtt gccctgcgct
      661 gcacaactgc cggacttgag actccagccg tattccccgc ctgccacgct gttgtcgacg
      721 gagatgagga cgtgcgtcca gccgggcgtt gggctgggtg ttacggccgc cgctccggag
      781 acgccggtcg ttccggtacc gtgtatggcg ccgagccaca atggaactgg cttgggggcc
      841 ggcaaaacgc cgagcgtgtt gggggaatcg tagaattgtg tcgcgcagga ggcacagact
      901 gctccgattg cggcgacggc agcaaggtgg cgaagtaagt tcgaggtcaa tcgcatttcg
      961 gccagattaa tgcaatttcc gggcgcgacg cccgcggcaa caagttgccg atcactccaa
     1021 tccacttctc gatgtcatcc gcatttttcg gactccgcac cgtcatttac catgtgtcgg
     1081 acctgcaggc agcgaaggaa tggtatacgc tcgcgacggg aatcgagccg tacttcgacg
     1141 agtcgttcta tgtcggcttc aacatcggtg gcttcgagct gggactggat ccagatccat
     1201 cgagcggcat gagcggcgtt ggtgggacga ccgcctactg gggagtcgcg agcgtagcgc
     1261 gcgcgctagt ggatctggtt gaagcaggcg caactctcaa ggcaccggcg accgatgtcg
     1321 gcgacgggat tcgcgtgggg gtcgtgctcg atccattcgg caacgagctg ggcgtcatag
     1381 agaatccgca cttcaagctc gttgaagtaa gctgacgatc gagggcggga tcacatgcga
     1441 tcggacggcg agatcggtgc ggcgtccgac gtctcgagca cacgctcggc gacggccttc
     1501 attctgtcgt cctggttgcg cgatatgcgt ctgattgagc gacgcacctg acgatagcgg
     1561 tcggcgagaa agagacgcgc gcaatccatc tccggcttga cggcgtcgac gctgcctgcg
     1621 cgctcgatct cccaggttgt tcgcgacagc accgcggtgc tcatgtagat accgattgcg
     1681 gcgtcggcca ttcgctcctg gatgaactgg cggtccacga tcttcctgcc atgtctcatc
     1741 accgcgctat ccacggctag cgcgagagtg tgaaccagcg ttgcgacgcg atcagcttcc
     1801 ttggaaagcg acgggtgaac tctggtgaat tccggtttct tc
//
LOCUS       DATIMD010000458        11203 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_474796, whole genome shotgun sequence.
ACCESSION   DATIMD010000458 DATIMD010000000
VERSION     DATIMD010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 11203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11203
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474796"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..747
                     /locus_tag="VLI40_10170"
     CDS             <1..747
                     /locus_tag="VLI40_10170"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSU97587.1"
                     /translation="PVDYQPGRKYPVAFMIHGGPQSAWNDDFHYRWNPETYAGAGFAV
                     VAINPRGSTGYGQAFTNAVSGDWGGAPLGDLKKGWAAALERYSFLNGNEACALGASYG
                     GYMVYWMAGVWNKPWKCMVDHDGVFDTRMMAYATDELWFEDHENGGTQYEHPANYEKF
                     NPLDHVAQWRVPMLIVHSGHDFRIPDSQGIGAFTALQRRGIPSKLLYFPDESHWVQKP
                     HNSVLWHDTVIDWLKEWTGGKSGQAANVTR"
     gene            744..2000
                     /locus_tag="VLI40_10175"
     CDS             744..2000
                     /locus_tag="VLI40_10175"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU97588.1"
                     /translation="MSSTAAVGPGVRHPWVWAVLYFPYGLTFGFPAIAIGFLARRAGM
                     PLSAIAGVVGMSFLAAGWKFVWAPLGDYTLSRKRWYLLAVVMISAGLVALTTVPLSAH
                     TLPLVSLLVLLTSVAGTFLAFATEGLMVHNTPAAMRGRAAGWFQSGNQFGQTAGGGVG
                     LWLMTHVASPWMAGILLAAVVCSCAAVLPLLHEPERQLANAPVATRASDALRNLLVLI
                     RSRAGRIGLLLAVLPIGTGAAEFLFGSLGREWRAPADTVSAVLGLGGGVAIVLGCFVG
                     GRLADHLHKPTAYAVSCGLGLAACVLMALSPRTAGGYAATTLFYTFTLGMVAASYTGL
                     VLAIVGHTAAATKINLFFALNSLFSLGMLRVDGWAHDSWGTNGMLFTEALVGVVALAI
                     FVAVVSRIRGNVLVLDVDDRGPVIAH"
     gene            complement(2533..4617)
                     /locus_tag="VLI40_10180"
     CDS             complement(2533..4617)
                     /locus_tag="VLI40_10180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97589.1"
                     /translation="MTTALVPRQPALRAGVTVIATTSRGETWYVVKNPESGSYLRMGA
                     TEGRVLRALDGMTAPAEIVRRLAAEGVRISVATVETFVRVCSRRGLLENTAAERFVLQ
                     LERLRAERSRSRSLFRGELLRMRWSFGDPNAFFDRTLPSLRWCFTRPFVIGSTILWLA
                     AIWAAVGQSSRLHAEVGALLLPANLTLGRTLLIWLIFLGIAIVHEIGHGYTCKRFGGE
                     VHEIGFMLVYLQPAFYCNVSDAWSFPDLRARLWVTAAGGWIELVVAASATLVWCFVQP
                     GSPLSEPALIITVLAGGLGLLTNANPLMPFDGYFALSDWLGIPNLRQRGLAYWGWWLR
                     RHVLHLDAPEPAATPDEQRILLRYGSVAAVYITVVLAATLHYIGAWSWRTFGGFGLLA
                     SAIASVFLFRSMVRSWGEAVRDAAMQSGAWVARRLRGRRARGVWAALILVVLVSIVLP
                     WPITTGGSMTAVSATSATAVVATESGVVSAVLVREGDRVVTGDPVLLLAEPGVLRERE
                     SLARVMATQSADQLAAQVRGDAAATEIAAAGRRAALVRAASADDRLARGVVRARSSGT
                     IVTPHTERLLGQRLVAGATAVEIADADSVELHISLGGAGAVLARNGMQVRLMSYADAA
                     HPIVASVSSVAALGDTADASGRLEARVRVARNAAWRPGVTGEGRIVLRQSTLLGAAWW
                     RVRSWVRTDLLL"
     gene            complement(4624..5673)
                     /locus_tag="VLI40_10185"
     CDS             complement(4624..5673)
                     /locus_tag="VLI40_10185"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSU97590.1"
                     /translation="MIFYLSNRHALRLILVAAVCAAATTGTTGCNVGTASSAAQVTTA
                     TAKGRPTPSLVSAGAGGDDVATVQVITVDDPLVLPAQLYVDHDVVIAAQSSGVLQHLD
                     ADLGKSVAAGAVLANIDSGDQRIAVAKAEAAVTQASRFAKRLRALSYTGGVTVADSES
                     AEFAVRQAGLSADSARRALALTRVTAPFAGVIAARYVGPYRLVHVGDTLFRITETGPL
                     LARVRVPEGRRDALVPGARATVEDIEHRTVAAHVIRVAPTVDAASGTREVILAVGSAA
                     GLRPGSAVTVRLGAATRRVTVVPNDLIGEGGYVVVLGAQPTLRQVRLGDELAGGRREV
                     LSGLAPGNRVRRPDR"
     gene            complement(5670..7550)
                     /locus_tag="VLI40_10190"
     CDS             complement(5670..7550)
                     /locus_tag="VLI40_10190"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSU97591.1"
                     /translation="MSSDSTSSTLAAATSLVENRAQGVVHDRLTALRAGVADLAAAGS
                     TLEIPPIALRIALAATDSPNGSFWRATAAGWECHVASGPQSSGLAGRVVPMDEVFTES
                     EDGRVIVAALAPTAGAAPFAALRVWRESDAAPFHPDIDREWLAAVAVAAAAAFVADAR
                     LRQADRSTDVALLAEMSREIASTLDIDRVLRLAVNLAARAVPFDRGAIALYDHGHCDV
                     RAIAGVTSIDPEDPAVRDIAARGEWAAGTGEGFYLSDRDAPGSDAERIFVQIFGEDLA
                     AANAESGLYLPLKDEEGVLGVLVLESAHPDFANAREREITDVLAAQVTVAIRNAQLYA
                     QIPLAATIGAFTSRGRALLELPRRRRALAAGIAVVVLAALTLIRWPLRVVGDTPVLSA
                     LDPVEARALVDGVVERILVTEGVPVQRGMALAQLRDADARTTRDAVLSERDVDVRTAT
                     LAASRGDAAQEQLFRERAASLQREADVLDNQLNLAVVRAAVDGVVLTAHPEQRVGLRL
                     AAGDPLLLVGRTDTLELNLGVAEADLALVHVGEEVRLRVDALPGRTFTGRVAQLAELP
                     AARGDGVDFPVRALVPNTDGALRPGMTAYARVLGARTSVAGRVLRRPIRGARLLWWRL
                     WS"
     gene            complement(7765..7923)
                     /locus_tag="VLI40_10195"
     CDS             complement(7765..7923)
                     /locus_tag="VLI40_10195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97592.1"
                     /translation="MSTPQKKDEFVRIDLTQQQSEKVKKVTGKDAEAIELTINELEER
                     IAPMRMTF"
     gene            8111..10087
                     /locus_tag="VLI40_10200"
     CDS             8111..10087
                     /locus_tag="VLI40_10200"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSU97593.1"
                     /translation="MIVNVDGAVSGAGRLGGKAVALLAYLAIERRHHSRSALAALLWS
                     EQTEDHARTSLRQALTQIRHVVGPILRDDGGSLVLDAEVACDVDSLLSDDESTGVGPD
                     VSRFLTELPLRGARVFEDWATVTREHMRARAAGRLARAVAQLLARRDPTAALAAAEQW
                     CALAPLDDEPEIAAAHVLEQAGRAVEGLARLVAHERMVQDEIGRPPGAALGALVQRLR
                     KRAASETDWASMHGLTPAADAQVDGVSDEARREDARIVAQLLASAPLQERESEWRALT
                     SAWMAASKGKGGVVLIRGEHGVGKSRLLHDLGSWVAGTGGTVLQVSGLEARRSVPFDL
                     LARLVHAGINADGAGCIDGSWLAELARLEPDLYARFPGAPPAPTASAVGGWRVFEALA
                     QLLAVLADENPVLVMLDDLPWCDAESTGLLQALVERTRDTAVLWCATTTAGIAGRAAP
                     GAQLARTLARVPGAQVMEPTRITARGVRGIVDALGRLDDRPDAALRASALTERVLAES
                     EGLPLFTVALLRALYTGGVLIWTAGVWDVQLPAGDPLTIHLVDLDALRRPVAVRVETL
                     AEDERQILITIALAALPCDVELLSHVHGISQLRGATLCNALCESGLLVEEQHAFRCAL
                     RFTAAVVQAGVGEVIRRETIRAVAAALAARAGRE"
     gene            complement(10130..10588)
                     /locus_tag="VLI40_10205"
     CDS             complement(10130..10588)
                     /locus_tag="VLI40_10205"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU97594.1"
                     /translation="MANTRLDHVSVVVDDLAGAVAFFTALDMTIAGEAPIEGQWVDRI
                     NGIEGVRVDIVMMRTSDGHGQLELTKFHNPKLVELEPAIAPPNALGLRSVMFAVDSVD
                     DAVARLRAKGGELIGEVAQYKDIYRLCYMRGPAGIIVALAEELRKPSQPS"
     gene            10734..>11203
                     /locus_tag="VLI40_10210"
     CDS             10734..>11203
                     /locus_tag="VLI40_10210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar O-acetyltransferase"
                     /protein_id="HSU97595.1"
                     /translation="MLNDDRTRVIHRRTPEAAAMVANVKRATAITAALNRLTFDDADE
                     IRTLFSELIGKKVDESFLLIPPFYTAAGNEIRVGRNVFVNQNCTFYDLGGLDIADDVM
                     IGPNVNIITTSHPVEPSQRRALTIGKPIVIGKGVWIATGATIIGGVTVGENSVVA"
BASE COUNT         1985 a         3587 c         3700 g         1931 t
ORIGIN      
        1 cccgtggact atcaaccggg cagaaaatat cccgtcgcgt tcatgatcca tggaggtccg
       61 cagagtgcgt ggaacgacga ctttcactat cgctggaatc ccgagacgta cgcgggcgcg
      121 ggtttcgccg tcgtcgcgat caatccgcgc ggatcgaccg gctacggtca ggcattcacc
      181 aacgcggtgt ccggagactg gggcggtgca ccgctcggcg atctcaagaa aggctgggcg
      241 gcggcgctcg agcgttactc gttcctgaat ggcaacgagg cgtgcgcgct cggcgcgagt
      301 tacggcggct acatggtgta ctggatggcc ggcgtgtgga acaagccgtg gaagtgcatg
      361 gtggaccacg atggtgtgtt cgacacgcgc atgatggcgt acgcgaccga tgagctgtgg
      421 ttcgaggatc acgagaacgg cggtacgcaa tacgaacacc cggcgaatta tgagaagttc
      481 aatccgctgg atcacgtagc gcagtggcgc gtgccgatgt tgatcgtgca cagcggacac
      541 gacttccgga ttcccgacag tcagggtatt ggtgcgttca ctgcgctgca acggcgcgga
      601 attccgagca agctgctcta cttccccgat gagagtcact gggtgcagaa gccgcacaac
      661 agcgtgctgt ggcacgacac agtgatcgat tggctcaagg agtggaccgg tgggaaatca
      721 ggtcaggcgg cgaacgtgac gcggtgagct cgaccgcggc cgtcggtccc ggcgttcgac
      781 atccgtgggt gtgggccgtg ttgtatttcc cgtacggcct caccttcggt tttccggcca
      841 tcgccattgg ctttctcgcc aggcgtgcgg gaatgccgct atcggccatc gccggtgtgg
      901 taggcatgtc gttcctggcc gcgggatgga agtttgtctg ggctccgctg ggcgactaca
      961 ccctgtcacg caagcgctgg tatctcctcg cggtcgtgat gatatccgcg ggcctggtgg
     1021 cgcttacgac ggttccgcta tccgctcaca ctctgccact cgtgtcactg ttggtgctgc
     1081 tcacgagtgt cgccggaacg ttcctcgctt tcgcgacgga gggactgatg gtgcacaaca
     1141 ctcccgccgc aatgcgcggc cgcgcagctg gatggttcca gtcgggcaat cagtttggac
     1201 agaccgccgg cggcggcgtg gggctctggc tcatgacgca tgtcgcttcc ccgtggatgg
     1261 cggggattct actcgctgca gtcgtctgct catgtgccgc cgtgctgcct ctattacatg
     1321 agccagagcg ccagctcgcg aacgcgcccg tcgcgacgcg tgcgagtgat gcactgcgca
     1381 atctgttggt gctgattcgc tcgcgtgccg gacgcatcgg actgctgctc gctgtactcc
     1441 cgatcgggac aggcgcggcg gagtttctgt tcggatcact tggacgggag tggcgagcgc
     1501 ctgcagatac cgtgtccgcc gtgctcggac tgggcggtgg agtggccatc gtgctcggct
     1561 gttttgtggg tgggcggttg gccgatcatc tgcacaagcc aacggcctac gctgtgtcat
     1621 gtgggctcgg tctcgcagca tgcgtattga tggcgctatc cccacgcaca gccggtggct
     1681 acgcagcgac gactctcttc tacacgttca cgctcgggat ggtggctgca tcgtacacgg
     1741 gactggtgct cgcgatcgtg ggtcacacag cggcagcgac caagatcaac ctgttcttcg
     1801 cactgaactc actgttcagc ctcggcatgc tgcgcgtgga cggttgggcg cacgactcct
     1861 ggggaaccaa cggcatgctg ttcaccgaag cgctggtggg ggtggttgcg ctcgccatat
     1921 tcgtggccgt cgtgagccgc atacgcggca acgtgctggt actggacgtg gatgacagag
     1981 ggccggtcat agcgcactga atccggttcg tgcgtcatga tgcacgccgg aatcgcgtca
     2041 cacttgtcac tcacaccgtt ccggcgtctg gtgccagact tatctcacaa gcaacggcta
     2101 ccgacagcga gcgatgagca gcgaacgaga tcgttctttc gccccgagac gcggtaatga
     2161 gcccaaaccg ggagacagga tcatgtccac atcagcccaa ccagccatgc acacgccacc
     2221 agtcgtatcc cagcaggagt gggaggtcgc acgcaaggcg ctgctcataa aggaaaaaac
     2281 caatacccgt gcccgcgacg cgctggcgct cgcggcgtcg ccgacgtttg cgatcatggc
     2341 gctgctgacc ggtatcatgg gcaatggttc gttggagatg tccggaatgg cgcactcatc
     2401 tccgatgagc ggaatggtca cgatgtacct gctgatgagc gtatttcacg gggctgcatg
     2461 gctgaagctg atgcgcacgc gcgctggtcg gtctgagagc ggagttcgtt gcgataccga
     2521 gcggaatcgc tttcagagca ggaggtccgt ccgcacccat gaccggaccc gccaccacgc
     2581 cgcaccgagt agtgtcgact gacggagaac gatgcgaccc tcgccagtga cccccggccg
     2641 ccatgctgcg ttgcgcgcca cacgtacgcg tgcctcgagc ctgccactcg cgtcagcagt
     2701 gtcaccgagc gctgctacgc tgcttacgga tgcgacgatc gggtgcgcag catccgcgta
     2761 gctcatgagc cgcacttgca tgccgttccg tgccagcacc gcaccggcac ccccaaggct
     2821 gatgtgcagc tctacgctgt ctgcgtctgc aatctccacg gccgtcgcgc ccgccacgag
     2881 tctctggccc agcagacgtt cggtgtgcgg agtgacgatc gtgccggagg atcgtgcgcg
     2941 aactactccc cgcgcgagcc gatcgtcggc ggacgcagcg cgcaccagtg ccgctcgccg
     3001 tccggcagcg gcaatctctg tcgcagccgc gtcaccgcgt acctgcgcgg cgagctggtc
     3061 tgccgactgc gtagccatca cacgcgcgag tgactcgcgc tcccgcagca cgccgggttc
     3121 ggcgagcagc agcacgggat cgccggtcac cacgcgatcg ccctctcgca cgaggacagc
     3181 gctcacgaca ccggactccg tggcgaccac ggccgtagcg gacgtcgcgc tcaccgccgt
     3241 catgcttccg ccggtggtga tcggccatgg tagcacaatg gaaaccagaa ccacgagtat
     3301 cagcgccgcc catactccgc gcgcgcgccg tccgcgcagc cggcgcgcga cccatgcacc
     3361 cgactgcatt gccgcgtcgc gtactgcctc tccccagctg cgcaccatgg agcgaaagag
     3421 gaatacgctc gcgatcgcac tcgcgagcag tccgaatcca ccgaatgtcc gccacgacca
     3481 tgcgccgatg taatggagcg tagccgcaag tactacggtg atgtatacag cggcgaccga
     3541 gccgtagcgc aacagtatac gttgctcatc tggcgtcgcc gccggctcgg gggcatcgag
     3601 atgcagcacg tgtcggcgca gccaccatcc ccagtatgcg agtccacgct ggcgcaggtt
     3661 cgggatgccg agccagtcgc tgagtgcgaa gtagccatcg aacggcatga gagggttggc
     3721 gttggtaagc agtcccagtc cgccggccag gaccgtgata atcagggcgg gctcggacaa
     3781 cggagagccg ggctgtacga aacaccagac cagggtcgcg ctggcggcga ccacgagctc
     3841 gatccagccg cctgctgcag tcacccacaa tcgcgcacgc agatcgggaa agctccatgc
     3901 atcgctcaca ttgcagtaga aagctggctg caggtaaacg agcatgaagc cgatctcatg
     3961 tacctctccg ccaaaacgct tgcacgtgta gccgtggccg atctcgtgga caatcgcgat
     4021 gccaaggaag atgagccaga tcagcagcgt acgtcccagt gtgagatttg ctggcaacag
     4081 cagcgcgcca acctcggcgt ggaggcggga cgactggccc acagcggccc agatggccgc
     4141 gagccatagt atggtcgaac cgatgacgaa cggtcgcgtg aagcaccagc gcagcgatgg
     4201 cagcgtgcgg tcgaagaatg cgttgggatc gccgaacgac cagcgcatgc gcaacagctc
     4261 gccgcggaac agcgagcggc tccggcttcg ctctgcgcgc aatctctcga gctgaagtac
     4321 gaatcgttcg gcggcggtat tttcgagcag tccgcggcgc gagcatacgc gcacgaatgt
     4381 ttcgacggtg gcgacggaga tgcgcacgcc ctccgctgcg agccgccgca caatctccgc
     4441 cggtgccgtc atcccgtcga gggcgcgcag cactcgacct tcggtcgcgc ccatacggag
     4501 ataactcccg ctctccggat ttttcacgac gtaccacgtc tcgccacgcg aagtggtcgc
     4561 gataacggtg accccggcgc gaagtgcggg ctggcgtggg acgagcgcgg tcgtcatgac
     4621 ggttcagcga tcggggcgcc gcactcgatt tcccggcgca agcccggaga gcacctcgcg
     4681 ccgcccgccc gccagttcgt ctccaagccg cacctgtcgc agcgtcggtt gcgcaccgag
     4741 cacgaccaca tagccgcctt cgccgatcag atcgttcgga acgacggtca cgcgccgcgt
     4801 cgccgcgcca agccgcacgg taactgccga tccgggtcgc aggccggccg cgctaccgac
     4861 tgcgagtatg acctcgcgcg taccacttgc cgcgtccact gtgggcgcga cacgaatgac
     4921 atgagccgcg acggtgcggt gttcgatgtc ctcaaccgtc gcgcgggcgc ccggtacgag
     4981 cgcgtcgcgc cggccttcgg gcacgcgcac gcgcgcaagc aggggaccag tctcggtgat
     5041 ccggaagagc gtgtcgccaa catgcaccag acggtaaggc cccacgtagc gcgcagcgat
     5101 gacgcctgcg aatggtgcag tcactctggt aagtgccaac gcgcgacgcg ccgagtcggc
     5161 ggacaggccg gcctggcgga cggcgaactc cgccgattcg gaatcggcaa ccgtaacacc
     5221 cccggtgtat gacagtgcgc gcaggcgctt tgcgaaacgt gaagcctggg taacggccgc
     5281 ttccgccttg gccacggcga tccgctgatc cccactgtcg atattggcga gcacggctcc
     5341 ggcagcgaca gatttgccga ggtccgcatc aagatgttga agaactccgc tcgattgcgc
     5401 ggcgatcacg acatcgtgat cgacatacag ctgcgcgggc agcacgagcg gatcgtcgac
     5461 cgtgatgact tgcaccgttg caacgtcgtc cccaccagca cccgcggaca caagcgacgg
     5521 tgtcggacgg cctttggcgg tagccgtcgt gacctgggcg gcggagctgg cggttccgac
     5581 gttgcagccg gtagtgccgg ttgtcgcagc ggcgcagacc gctgcgacga gaattaggcg
     5641 cagagcgtgc cggttcgata gatagaaaat catgaccaca gtctccacca gagaaggcgg
     5701 gcaccgcgaa tcggtcgccg gagcacacgt ccggcaaccg aggtgcgcgc gccgagcacg
     5761 cgtgcgtacg cggtcatccc gggccgcagc gcaccgtcgg tgttgggcac gagcgcgcga
     5821 acagggaaat caaccccgtc accgcgcgca gcggggagtt ccgccagctg ggcgacgcgt
     5881 ccggtgaacg tgcgaccggg cagcgcgtca acgcgcagtc ggacttcctc gccgacgtgt
     5941 accagcgcca gatcggcttc cgccacgccg agattgagtt cgagggtgtc tgtccggccg
     6001 acgagtagca atggatcgcc ggctgccagc cgcagtccca ctcgctgctc gggatgcgcg
     6061 gtgagcacga cgccgtcaac cgcggcgcgc acgacggcga ggttgagctg gttgtcgagc
     6121 acatcagcct cacgctgaag cgacgcggcg cgctcgcgga acagttgctc ctgcgcggcg
     6181 tcgccgcgac tggcggcgag cgtcgcagtg cgcacgtcga catcccgctc ggacagtacg
     6241 gcgtcacgcg tcgtacgcgc gtccgcgtcg cgcagctgag cgagtgccat cccgcgctgg
     6301 acgggtacgc cctctgtcac gagaatgcgc tcgacaactc cgtcgacgag cgcgcgcgct
     6361 tctacggggt cgagcgcgct gagcactggc gtatcgccca ccacgcggag cggccagcga
     6421 atcagtgtga gtgctgcaag aacgacaact gcgataccgg cggcgagcgc gcgtcgccga
     6481 cgcggcagct cgagcagtgc gcggccgcgg gatgtgaacg caccgattgt cgcggcaagc
     6541 gggatctgtg cgtagagctg cgcattgcgg atcgcgacgg tgacctgtgc ggcgaggacg
     6601 tcggtgatct cgcgttcgcg cgcattggca aagtccgggt gcgcagactc gaggacgagc
     6661 acaccgagta caccctcctc gtccttcagc gggagataca gaccgctctc ggcgttggcg
     6721 gcggcgagat cctcgccgaa gatctgcacg aagatgcgct cggcgtcgga gcccggcgcg
     6781 tcgcggtcgc tgagataaaa accctccccg gtgcccgccg cccactcgcc gcgcgcggcg
     6841 atgtcgcgca ccgcggggtc ttccggatcg atgctcgtca caccggcgat cgctcgcacg
     6901 tcacagtgtc cgtgatcata gagcgcgatc gcaccgcggt cgaaaggcac cgcgcgtgcg
     6961 gcgaggttga cggcgagtcg cagaacgcga tcgatgtcga gcgtggatgc gatctcgcgg
     7021 ctcatctccg cgaggagcgc cacatccgtg ctgcggtcgg cctgacgcag acgggcgtcg
     7081 gcaacaaacg cggcggctgc ggctacggcg accgcagcga gccactcacg atcgatatcc
     7141 gggtgaaatg gagctgcgtc ggattcgcgc cacactcgga gtgcggcgaa gggcgcggca
     7201 ccggctgtcg gcgcaagtgc ggcgacgatg acccgtccat cttcgctttc ggtgaacacc
     7261 tcgtccatcg gtacgacccg gcctgcgagc cccgacgatt gtggtcccga ggcaacgtgg
     7321 cattcccatc ccgctgccgt cgcgcgccag aaggaaccgt tcggggaatc cgtggcggcg
     7381 agcgcgatgc gaagggcgat cggcgggatc tcgagcgtgg aacctgcggc ggcgagatcc
     7441 gcgactccag cgcgcagcgc ggtgagccga tcgtgcacaa ctccttgagc ccgattctcc
     7501 accagcgacg tggccgcggc tagcgtggag gaggtggagt ctgaactcac ctcttcacgc
     7561 aaagaaccgc gcccgatcgg ttccgatgga tttttgccct gcggagcctc tcgctccgct
     7621 cacgcactgt ggtggctcac tggggtccat attgcgccac atccccgttg gccgcaagac
     7681 atcgcagccc tttgtgagct attcagctcc caaactacaa agtgcccgac ttcgcacgtg
     7741 cgaagtcggg cacttcataa ttcattagaa agtcattctc atcggcgcga tccgctcttc
     7801 gagctcgttg atcgtcaact cgatggcttc ggcgtccttg ccggtaacct tcttgacctt
     7861 ctcgctctgc tgctgggtca gatcgatgcg aacgaactca tccttcttct ggggagtgga
     7921 catggtttgc tccggttcgg gattgcatga aagagccgat tggcttgtga acaaatgaag
     7981 gatgtaaacc cgccgtgatc cgagcgtgaa ctcactagcg gatggcgtga attcgcagta
     8041 gcttcgcccc gcttgactga ggaggaggag gccgtacctg ccccagctat acctcacgct
     8101 ctgcggaacc gtgattgtca acgtggatgg tgccgtttcc ggtgctggac gactgggcgg
     8161 taaggccgtc gcgcttctgg cctacctggc catagagcgc cggcaccatt cgcgttccgc
     8221 acttgccgcg ctactctgga gcgagcagac cgaggaccat gcgcgcacct cgcttcggca
     8281 ggctctgacg cagatccggc acgtcgtggg accgatcctg cgcgatgacg gcggctcgct
     8341 cgtgctcgat gcggaagttg catgcgatgt ggattcactg ctgagcgacg acgagtccac
     8401 tggagtgggc cccgacgttt cgcgcttcct gaccgagctg ccgctgcgcg gagcgcgcgt
     8461 gttcgaggac tgggccaccg tcacccgcga gcacatgcgg gcccgtgcgg ctggacgtct
     8521 cgcgagagcg gtcgcacagt tgcttgcgcg ccgcgacccc acagcggcgc tggcggcggc
     8581 cgagcagtgg tgtgcactcg caccgctgga cgacgagcct gagatcgctg cggcgcatgt
     8641 gcttgagcag gctggccgag cggtcgaggg ccttgcgcgg ctcgtagcgc acgagcgaat
     8701 ggttcaggac gaaattggtc gtccgccggg tgccgcgctc ggcgcactcg tacagcgact
     8761 ccgaaagcgc gctgccagcg agacggactg ggcctcgatg catggtctca cgccggcggc
     8821 ggatgcccag gtcgacggag tatcggacga ggcccgccgt gaggacgcgc gtatcgtcgc
     8881 acagctcctc gccagcgcgc cgctccagga gcgcgagtcg gagtggcgcg cgctcacctc
     8941 cgcctggatg gcagcctcga agggtaaggg tggcgtggta ctgatccggg gggagcatgg
     9001 agtgggaaaa tcgcgcctcc tgcatgacct cggcagctgg gtggccggca ccggcgggac
     9061 tgtgctgcaa gtgtcggggc tggaagcgcg acgtagcgtg ccgttcgacc tgctcgcgcg
     9121 cctcgtgcac gctggaatca atgcggacgg cgcgggctgc atcgatggtt cctggctggc
     9181 agaactggcg cgactcgagc cggatctgta cgcgcgcttt cctggggcgc caccggcgcc
     9241 gacagcgtca gccgtgggcg gctggcgtgt cttcgaggcg ctcgcacagc ttcttgccgt
     9301 gctcgctgac gagaatccgg tgcttgtaat gctcgacgat ctgccgtggt gcgatgcgga
     9361 gagcacaggg ctgctgcagg cgctggtcga gcgcacgcgc gacaccgccg tgctctggtg
     9421 cgctacgacg acggcgggga ttgcgggacg cgccgcaccg ggcgcgcaac tggcgcgcac
     9481 actcgcgcgc gtgccgggcg cgcaagtcat ggaaccgaca cgcatcacag cgcgcggcgt
     9541 gcgcggcatc gtcgacgcac tcgggcggct cgacgaccgg ccggacgccg cgttgcgagc
     9601 gtcagcgctc accgagcgcg tactagccga aagcgagggg ctccccctct tcacggtcgc
     9661 gttgctgcgc gcgctgtaca cgggcggcgt gctcatatgg actgccggtg tgtgggacgt
     9721 acagctcccc gctggcgacc cgctgacaat ccaccttgtc gatctcgacg cgctccgtcg
     9781 gcccgtcgct gtgcgtgtcg agacgctggc cgaggatgag cggcagatac tcataaccat
     9841 cgcactcgct gcgctgccct gcgacgtaga gctcctgtcg catgtgcacg gtatctctca
     9901 gctccgcggc gccacgctgt gcaatgcctt gtgcgagagc ggacttctgg tcgaagagca
     9961 gcatgccttt cgctgcgcgc ttcggttcac ggccgcagtc gtgcaggccg gcgtggggga
    10021 agtcatcaga cgtgaaacta ttcgcgccgt cgccgcagcg ctcgctgctc gtgcagggcg
    10081 cgaatagtaa cgaggaatcg cggcgacccg cctgtgacgc tgtccgtttc tacgaaggct
    10141 gtgaaggctt ccgaagttcc tcggccaatg ctacgatgat acccgcaggg cctcgcatgt
    10201 agcagagcct gtagatgtcc ttgtactgag ccacttcgcc gatgagctcg ccgcctttgg
    10261 cacgcaggcg agcgacagcg tcgtcgacgc tgtcgactgc gaacatgaca ctccggaggc
    10321 ccagcgcatt cggcggcgcg atcgcgggtt cgagctcgac cagcttcgga ttgtgaaact
    10381 tcgtcagctc gagctgcccg tgcccatccg aggttcgcat catgacgatg tcgacccgga
    10441 caccttcgat cccgttgatg cggtcgaccc actgaccctc gatcggcgcc tcgcccgcaa
    10501 tcgtcatatc gagagcggtg aaaaaagcga cagcgcctgc aaggtcgtcg acgacgacgc
    10561 tgacatgatc cagtctcgtg ttcgccatgc ccgtagtata gcaagggctg tgctcgacgg
    10621 tccaggcccg gagcgcatga tgcatcgtcc tgtattatgg tgcagagtcc gacatgatcc
    10681 gcggccttga catcgcagat cacttgtagc gcacgacgac agggaaatca agaatgctga
    10741 atgacgaccg cacacgggta attcacagac ggacaccgga agcagcggcg atggtcgcaa
    10801 acgtcaagcg agcgaccgcg atcaccgccg cactcaaccg tttgacgttc gacgatgccg
    10861 acgaaatccg gacgttgttc agcgagctaa tcggcaaaaa agtggacgag agcttcctgc
    10921 tgatccctcc attttatacc gccgccggaa atgaaatccg cgtcgggcgt aacgtcttcg
    10981 taaatcagaa ctgcacgttc tacgacctgg gcgggctcga catcgcagac gacgtgatga
    11041 tcggtccgaa cgtgaacatc atcacgacga gccatccagt cgagccgtcg caacgacgcg
    11101 cgcttacaat cgggaagccg atcgtgatcg ggaaaggtgt gtggatcgcg accggcgcaa
    11161 ccatcatcgg tggtgtgaca gtaggtgaga attcggttgt cgc
//
LOCUS       DATIMD010000459         3842 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3937108, whole genome shotgun sequence.
ACCESSION   DATIMD010000459 DATIMD010000000
VERSION     DATIMD010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3842
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3937108"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VLI40_10215"
     CDS             complement(<1..552)
                     /locus_tag="VLI40_10215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97596.1"
                     /translation="MPEQHALPARSLPARALPWILWALTFHILGIAVLFGYFNLSIKV
                     VQAIAAWKEIAGVLLFLVVVTRAATGRGPRVAVSAADLFAALWIALAVVFFATENVVL
                     RDFIPIKAAVFGVRDAAFFMLFYFVGRATPELGDDYRFMKHAFAVLSVTSILAIAEQI
                     FITPQMLVALGVAAYVQNFLGGVA"
     gene            complement(545..1639)
                     /locus_tag="VLI40_10220"
     CDS             complement(545..1639)
                     /locus_tag="VLI40_10220"
                     /inference="COORDINATES: protein motif:HMM:NF025179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNVR domain-containing protein"
                     /protein_id="HSU97597.1"
                     /translation="MPDVVPIAEPSLEPLTLALWTAGVLNRWRTVIVSTTCVLVLALL
                     SAVILPPIYRVTVSFAPNPSGSSKLGGAISSLSSGALSSLTSGMGLGSVGSEPTESPE
                     FYAELMQSRELLTRLLLTKMPDPRKGTPGDSARLVDILKLRSTDPARRIELGVKALGK
                     SMTTESNVKTNLIKVTIDDRYPTVAAHEANVALALVNAFNLEQRTSRARAKRVYLESR
                     SAQAKADLSTAQARYRDFLSSNRQWRLSPTLSSDEETLRRNEDVASDLYLSLEKQVES
                     AKIDEFNDAALITVVDSAVTPVKPYWPRFGLLIPGAILMGIFVGVTIAGVATVYADWS
                     RREPMAAHKLASAIRRRKARTDVPPVARRA"
     gene            complement(1649..>3842)
                     /locus_tag="VLI40_10225"
     CDS             complement(1649..>3842)
                     /locus_tag="VLI40_10225"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HSU97598.1"
                     /translation="GQDAYMSDSVRNSRQRQALARACKARADSLHRPEVIAQAQRDSG
                     FTIFGLDFFRRSTTLFNPNVAGPVDANYRLGPGDQLVLVLTGDVEQSYQLEVTRQGFI
                     VVPTVGQIYVNGLTLSQLNDVLYDRLGRVYSGVRRGADATTHFSITPAKLRSNMVFVV
                     GDVMAPGAYQVSASGTLLSALYAAGGPTDNGSLRDLQVRRGGKLIAHMDFYDYLINGD
                     ASHDVRLETGDIVFVPVHAARVRIVGEVVRPATYEIKPTETLADALRFSGGFKATASR
                     QRVQIERIVPPAERAPGRDRVTTDIVSDAFLTGTGPAVPVEPGDVIRVFPVATRVRNR
                     VTVRGNVNMPGTIGLTPGMTVSSALKLAGGIKPDTYLGEVLITRLNPDSTRQQLRATL
                     RDSTGAVVNDFPLHEDDNLTVYSVTGFRPVRYVAINGAVRKSGQFPYREGMTVRDLVL
                     EAGGLEQSALLNEARIARLPEDRTGTVTAREFTVPLDSSYLFERGPNGQYAGPPGLPA
                     SAGPTPDVQLKPYDNVLILRQPGWELQRTVTVAGEVRYPGKYTLLNKNEHISDVLKRA
                     GGLTPEGYANGVTFYRRSSAIGRIGIELPDVLKDPKSRDNLLLVDGDSLYIPRFNAVV
                     RVQGEVNSPVAVTYSPGKDLNYYIRAAGGATRKADVDHAYVTQPNGKVDAESQRFLIP
                     DYIPKPKPGSVVYVPVNEGGGPSVLAMLGSLTGVASSLLAVIALLRTH"
BASE COUNT          782 a         1163 c         1156 g          741 t
ORIGIN      
        1 cgcgacgccg ccgagaaaat tctgcacgta tgcagcgacg ccgagtgcaa cgagcatctg
       61 cggagtgatg aatatctgct ctgcgatcgc caggatggat gtgacagaca gcaccgcgaa
      121 tgcgtgcttc atgaatcgat agtcgtcacc cagctccggt gttgctcggc ccacaaagta
      181 gaacagcatg aagaaggcgg catcgcgcac accgaagacg gccgctttta ttggaatgaa
      241 gtcgcgcagc accacatttt ctgtggcaaa gaagacgact gccagcgcta tccacagggc
      301 cgcgaacaga tcagctgcag acaccgcgac gcgtggtccc cgaccggttg ccgcacgggt
      361 gacgacgacg aggaacagta gaacgcctgc gatttccttc cacgcggcaa ttgcctggac
      421 aacctttatt gagaggttga aatatccaaa gagaaccgcg atgccgagaa tgtggaacgt
      481 gagcgcccag aggatccatg gaagggctcg cgcgggaagc gagcgcgcgg gcagggcgtg
      541 ctgctcaggc acgacgcgca accggaggca cgtccgtgcg tgctttccgg cgccgtattg
      601 cagacgctag cttgtgggcc gccatcggct cacgccggct ccagtccgcg tacactgtgg
      661 cgactccggc aatcgtgacg ccgacgaaga tccccatcag gatcgccccg ggaatcaaca
      721 atccgaatcg cggccagtaa ggcttgaccg gcgttaccgc cgaatcgacg acggttatga
      781 gggcagcatc gttgaattcg tcgatcttcg ccgattcgac ctgtttctcg agtgagagat
      841 acagatccga agcgacgtcc tcgttgcgcc gcagcgtttc ctcatccgac gagagcgtcg
      901 gcgaaaggcg ccactggcga ttggacgaca ggaaatcgcg atagcgtgcc tgtgccgtgc
      961 tcagatcggc ctttgcctgc gctgaacggc tctcgagata aactctcttc gcgcgtgcgc
     1021 gggaagtacg ctgttcgaga ttgaacgcat tgaccagggc gagcgccacg ttggcttcgt
     1081 gcgccgcgac ggtcggataa cgatcatcga ttgtaacctt tatcaaattc gtcttgacgt
     1141 tggactcggt cgtcatcgac tttcccagcg ctttcactcc gagctcgatg cgccgcgccg
     1201 gatcggtgga tcgtaacttc aaaatgtcca ccagccttgc gctgtcaccc ggcgtgccct
     1261 tgcgcggatc cggcattttc gtgagcagca atcgtgtcag cagttcgcga ctctgcatca
     1321 gctcggcgta gaattcgggt gactcggtcg gttcactccc taccgatccg agtcccattc
     1381 cgcttgtgag actcgacaac gcaccggaac tcagactgct gatcgcgccg cccagcttgg
     1441 atgagccgct gggattgggt gcaaatgaaa cggtgactcg gtagatcggc ggcaggatca
     1501 ccgccgacag cagcgcgagc acgagcacac aggtcgtgct gacgattacc gtgcgccacc
     1561 ggttgagtac gccggcggtc cacaacgcaa gcgttagagg ctcgaggctt ggttccgcaa
     1621 tcggtacgac gtccggcatc ttcggagctt agtgtgtgcg aagcagggcg atcacggcga
     1681 gcaggctcga cgcgactccg gtcaacgacc cgagcatcgc cagtacgctg gggccgccgc
     1741 cttcgttcac gggcacgtat accacgcttc cgggcttcgg cttcggtatg tagtccggaa
     1801 tcaggaatcg ttgtgattcc gcatcgacct tgccgttcgg ctgcgtaacg tacgcatgat
     1861 cgacgtccgc cttgcgggtc gcaccaccgg cggcacgaat gtagtaattg agatccttgc
     1921 caggcgagta cgtaaccgcg accggcgagt tcacttcacc ctgcacacgc acgaccgcat
     1981 tgaatctcgg aatgtagagc gaatcgccgt cgaccagcag caggttgtcg cggctcttcg
     2041 gatctttcag cacatctgga agctcgatac caatccgtcc tatcgcactg gagcgacggt
     2101 agaacgtcac gccgttggcg taaccttcag gcgtaagacc gccagcacgc ttcagcacgt
     2161 cgctgatgtg ctcgttcttg ttaagcaagg tgtatttgcc tgggtagcgc acctcgccag
     2221 cgaccgtcac ggtgcgttgc aactcccaac ccggctgtcg caggatgaga acattgtcgt
     2281 acggcttgag ctgcacgtca ggtgtcggac cggcagaagc cggaagcccc ggcggtccgg
     2341 cgtactgacc gttggggccg cgctcgaaca gataactcga gtcgagcggt accgtgaact
     2401 cgcgcgccgt cacggtgcca gttctgtctt ccggcaagcg tgcgatgcgc gcctcgttca
     2461 gcaacgcact ctgttccagt ccgccggctt cgagtacgag atcgcgaacc gtcattcctt
     2521 cgcgatacgg gaactgaccg ctcttgcgca ccgcaccgtt gatcgcgaca tagcgaaccg
     2581 gacggaaccc ggtgacggaa tacacggtga gattgtcgtc ctcgtgcagc ggaaaatcgt
     2641 tcaccacagc gccggtcgaa tcacgcagcg tagcgcgcag ttgctggcgc gtcgaatcag
     2701 ggttcagccg cgtgatgaga acttcgccga gatacgtatc gggcttgatt ccacccgcga
     2761 gcttgagcgc gctgctgacg gtcatgcctg gtgtgagacc aatcgtcccc ggcatgttca
     2821 cgttgccgcg aacggttacg cgattgcgca cgcgggtagc gacggggaag acgcgaatta
     2881 catcgccggg ctcgactgga acggcaggtc cggttcccgt gaggaacgcg tcggaaacaa
     2941 tatccgtagt gacgcgatct cggcccggcg cacgctctgc cggcggcacg attcgctcga
     3001 tctgtacgcg ttggcgagat gcagtcgcct tgaatcctcc cgaaaagcgg agtgcatctg
     3061 ccagtgtttc ggttggcttt atctcgtagg tcgcggggcg tacgacctca ccaacgatcc
     3121 gcacacgagc ggcgtgaaca gggacaaaga cgatatcacc ggtctcgagc ctgacgtcgt
     3181 gcgacgcatc gccgttgatg agatagtcgt agaaatccat gtgcgcgatc agcttgccac
     3241 cgcgacgaac ctgtaagtca cgcaggcttc cgttgtcggt aggaccgcct gccgcgtaca
     3301 gcgcggacag cagtgtcccg gacgcagaca cctgataggc accgggcgcc atcacgtccc
     3361 cgactacgaa caccatgttg ctgcgaagct tcgctggcgt tatcgagaag tgtgtagtag
     3421 catctgcgcc gcgtctgacg ccggagtaca ctcgacccag ccgatcgtac aaaacgtcgt
     3481 tcaactgact caacgtgagc ccgttgacat atatctgccc gaccgtcggc accacaatga
     3541 aaccttggcg cgttacctcg agttgatacg attgctcgac gtcgccagtg agcacaagca
     3601 cgagctggtc acccggtcct aagcggtaat tcgcgtctac ggggccagca acattcggat
     3661 tgaacagcgt agtcgagcga cggaaaaagt cgaggccgaa tatcgtgaac ccactgtcgc
     3721 gttgtgcctg cgcgatcacc tcgggacggt ggagtgagtc ggctcgcgcc ttacatgctc
     3781 tagcaagcgc ctggcgttgc cgactgttcc gaacgctgtc cgacatgtac gcatcttgac
     3841 ct
//
LOCUS       DATIMD010000460         3249 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4812010, whole genome shotgun sequence.
ACCESSION   DATIMD010000460 DATIMD010000000
VERSION     DATIMD010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4812010"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2509
                     /locus_tag="VLI40_10230"
     CDS             <1..2509
                     /locus_tag="VLI40_10230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97599.1"
                     /translation="DAGATWTEIKGGGFPTTMKGRIGLAVAPSNSKIVYALVEADSLP
                     NPKKSTSTKGRQKLQSGLYRSEDAGATWTKMNDHDERPFYYSEVRVDPRDPNRVYWSS
                     TPVNFSDDGGKTVRNATIGIHVDHHAMWIDPNDPAHFVVGDDGGISQTWDRGGNFDFI
                     NTIAIGQFYAVSYDMGIPYRVCGGLQDNGSMCGPSRRARGNITNAMWFVTGGGDGFYT
                     AQDQTNPDIIYAESQGGAVGRLNYATGERSQIRKPSYRERYQQFEDSLVIARGDTTQP
                     ETPAMKKTLAELRARQRADSIISDMRFNWESPYFLSAHAPQTLYMGGNRVLKSLDRGD
                     HMFPISPDLSTQDTAKINISMHTTGGITLDATGAETYGTITTLAESPIRAGLLYAGTD
                     DGNVWLTRNDGATWDNLTTHFTGVPKGTDVSRIEPSAFDSATFYVTFDNHERNDFTPY
                     VFVTTDFGKTFRSIANNIPTDAPNWVRVIREDPVNRDLLFLGTDVAAYVSMDRGANWQ
                     RFMTGLPTVPVYDLKIQPRDHELIAGTHGRSIWIVDIAPLEQMKDADARGTGTHFFAP
                     STAFEYGESPVEGQEIGQKTFQGTSAPYGAQFTYRLASGVRDSVKFTVTSASGDTVAI
                     VNGPRASGATIERAYWDFRTRTKPEPLSPSQHRDSIAYMHRVDFVIDSMTKAGGNAAE
                     LTRIKAQLVSGGGGFGGFGRGGAPSDRFVARPAESPAPRAPGAAGAAGAGAAGRAGGA
                     GARGGARGGPGGEAPIDPTLMREVFQLVRIPGSSYPAGRGFGGRSAPLAGTGDYLVTM
                     TVGSQVQRQTVHVERSPGLDDDSSSGFGGEEEEDGNP"
     gene            2861..3070
                     /locus_tag="VLI40_10235"
     CDS             2861..3070
                     /locus_tag="VLI40_10235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HSU97600.1"
                     /translation="MRTTGTVKWFNDAKGFGFITPENGTKDCFVHHSAIGGSGFKTLA
                     EGERVEFEIVQGQKGPAAENVTKIG"
BASE COUNT          657 a          952 c         1036 g          604 t
ORIGIN      
        1 cgatgcaggc gcaacgtgga cggaaatcaa gggcggtgga tttccgacga cgatgaaggg
       61 acgcatcggt ctggcggtcg cgccgagcaa ttcgaagatc gtctatgctc tggttgaagc
      121 cgactcgctg ccgaatccaa agaagagcac cagcaccaag ggacgccaga agttgcagag
      181 cggcctgtat cgctccgagg acgccggtgc gacctggacg aaaatgaatg accacgacga
      241 gcggccattc tactattccg aagttcgcgt cgatcccagg gatccgaatc gtgtctactg
      301 gtcgtcgacg ccggtcaact tctccgacga cggcggaaag actgttcgca atgcgacgat
      361 cggcattcac gtcgatcatc atgcgatgtg gatcgatcca aacgacccgg cgcacttcgt
      421 cgtcggcgac gacggcggaa tttcgcagac gtgggacagg ggcgggaatt tcgacttcat
      481 aaacacgatc gcgatcggcc agttctacgc agtgagttat gacatgggaa ttccgtaccg
      541 ggtctgcggt ggattgcagg ataacggctc gatgtgcgga ccgagccgcc gcgcacgcgg
      601 caacatcacc aacgccatgt ggttcgtcac cggcggcggc gatggcttct acaccgcgca
      661 ggatcagacg aacccggata tcatctacgc cgaatcgcag ggcggtgcag tgggccgcct
      721 gaactacgcg accggcgagc gctcgcagat ccgcaagccg tcatatcgcg aacgctacca
      781 gcagttcgag gattcgctcg tcatcgcgcg cggcgatacc acacaacctg aaacgccggc
      841 gatgaagaag acgctcgccg agctcagagc tcgccagcgc gcggactcca tcatctccga
      901 catgcgcttc aactgggagt ctccgtactt cctgtcggcg cacgcgccgc agacgcttta
      961 catgggtggc aatcgcgttc tcaagtcact cgatcgcggc gaccacatgt tcccgatctc
     1021 gccggatctt tccacgcagg atacggccaa gatcaacatc agcatgcaca ccacgggcgg
     1081 catcacgctg gatgctaccg gtgccgagac gtatggaacg atcacaacgc tcgccgagtc
     1141 gccgattcgc gcgggtctgt tgtacgcggg caccgacgac ggcaatgtgt ggctcacgcg
     1201 caacgacggc gcaacgtggg ataatctcac cacgcatttc accggcgtgc caaaggggac
     1261 ggacgtcagc cgcatcgagc cgtcggcatt cgactcggcg acgttctacg tgacgttcga
     1321 caatcacgag cggaacgatt tcactccgta cgtattcgtg acgactgatt tcggcaagac
     1381 gttccgttcg atcgcgaaca acattccgac ggatgcaccg aactgggtgc gtgtgattcg
     1441 cgaggatccc gtcaaccgtg atctgctgtt cctcggtacc gatgtcgcag cgtacgtgtc
     1501 gatggatcgc ggcgcaaact ggcagcgctt catgactggt cttcccacgg tgccggtgta
     1561 cgatctcaag attcagccgc gcgatcacga gctgatcgcc ggaacacacg gacgcagcat
     1621 ctggatcgtc gacatcgcgc cgctcgagca gatgaaggac gccgacgcgc gcggcaccgg
     1681 cacgcacttc tttgcaccgt ccaccgcctt cgaatacggt gagtcaccgg tcgagggtca
     1741 ggagattgga cagaagacct tccaggggac gagcgcgccg tacggtgcgc agttcacgta
     1801 ccgtctcgcg tccggtgtgc gcgactcggt gaagttcacg gtcacgagcg cgagcggaga
     1861 tacggttgcg atcgtgaacg ggccgcgtgc atccggcgcg acgatcgagc gtgcgtactg
     1921 ggacttccgg acgaggacca agccggagcc gctctcgccg tcgcagcatc gtgacagcat
     1981 tgcgtacatg caccgcgtgg acttcgtgat cgattcgatg acgaaggccg gcgggaacgc
     2041 cgcagagctg acgcggatca aggcccagct cgtgagtggt ggcggcggct ttggaggctt
     2101 cggccgtggt ggcgctccga gcgatcggtt cgtcgcacgt ccggcggagt cgccggctcc
     2161 gcgcgcgccg ggtgccgcag gtgctgctgg tgcaggtgcg gctggtcgcg caggcggcgc
     2221 tggtgcgcgt ggtggcgctc gcggcggccc tggaggcgaa gctccgatcg atccgacgct
     2281 catgagagag gttttccagc tggtccggat ccccggaagc agctatccgg ccggccgcgg
     2341 gttcggcggt cgctcggcgc ccttggcggg cactggcgac tacctggtca cgatgaccgt
     2401 gggcagccag gtgcagcgtc agacggtcca cgtcgagcgc agtcctggac tggatgatga
     2461 ctcgtcgtcc ggctttggcg gggaggaaga ggaggacggc aacccgtagg gcgcgatcca
     2521 taggggcgca gctcctgtag tgcgccagtt agagcacctt gttgggccgc ggccatcgtc
     2581 gcggcccaac aaggtccgga gtcctgagaa atcgtgaaat tggggcttgc gtattttttc
     2641 agacacggta aattacttag tgcgacgcgt gcattcgtgt acgacaagtt cccatgtaac
     2701 taggagcctg gtattgcagg ctcctttttg ctgtccggcg ttgcagtcgg gttaaaatcc
     2761 gatccggact aggatcccca tcgtgagggc aatgatcacg aacactactc atggtcgtac
     2821 ggcataccca ttccgaccaa aacaagaaaa aggacaaaga atgcgtacga ccggtactgt
     2881 aaagtggttc aacgacgcga agggctttgg tttcatcacg cctgagaatg gtacgaagga
     2941 ttgcttcgtt catcattccg cgattggtgg atccggcttc aagactctcg ccgaaggcga
     3001 gcgcgtcgag ttcgagatcg tgcagggcca gaagggtccc gcggccgaga acgtaacgaa
     3061 gatcggctag tagtcgagcc acttttcgaa aagagggcca gatcgcgaaa gcggtctggc
     3121 cctttttgtg tctccgcgat cgcgagcagc ggctgagttg atggcgtatc ttgagaatcg
     3181 ccgatggcat aatgagtaca ggatcggatc accgccacaa ttcacgctgc ttccgacttc
     3241 gtacttgct
//
LOCUS       DATIMD010000461         3780 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2785701, whole genome shotgun sequence.
ACCESSION   DATIMD010000461 DATIMD010000000
VERSION     DATIMD010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3780
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2785701"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..1058
                     /locus_tag="VLI40_10240"
     CDS             138..1058
                     /locus_tag="VLI40_10240"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU97601.1"
                     /translation="MIDATSAFLEGVIRTATPLALAALGETVTERSGIINIGLEGSII
                     AGALGAVIGAAHGGVWGGFAFAAACGCGVAAIFALFAVTLRADQIISGTAVTLLALGG
                     TGTLYRILYGSAGAALNTPTLDPTVIPLLSQIPVVGRALFVQPSITYFLYVLIPAVAW
                     WMYRTHAGLGLRAIGENPAAAIAAGVRARRVQFLAVLFGGLLGGVSGGTLVLAQAGTF
                     VEGMSAGRGFIAIAIVVLGRWNPLGAALAALVFGAASALQFFFQATGSNLPYQLFLAF
                     PYVLTLVALAATRGRTSSPAALGRQDFDQD"
     gene            complement(1078..1824)
                     /locus_tag="VLI40_10245"
     CDS             complement(1078..1824)
                     /locus_tag="VLI40_10245"
                     /inference="COORDINATES: protein motif:HMM:NF020965.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyloxyacyl hydrolase"
                     /protein_id="HSU97602.1"
                     /translation="MKTDTAPGGIEFLRLIGTSNVVVRHVKFSVIFVAAAVAILSAQS
                     GAQAARGEVCGVPAPAVDSGAVSRRWSIGGWFAGGTHEPIKTREGHKEDRALFLAGIS
                     ASQLLGRWRFGELRYVPTLVPAVIATANREYERVVYDGGGVGLLPYKKTAFGVGLIPI
                     AAEATLHLSDRTGIVLGGGGGAAYFNRRIPDPDETRFNFLADGHTGVYVHSSAGTLTL
                     GFRLQHISNGDTGRVNPGLDTRMLYVGFNR"
     gene            1864..3315
                     /locus_tag="VLI40_10250"
     CDS             1864..3315
                     /locus_tag="VLI40_10250"
                     /inference="COORDINATES: protein motif:HMM:NF024742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU97603.1"
                     /translation="MTAIVHDPSMTEEPGTALVLDQAPARERWSWALYEFANTIFSMN
                     IATLYFAVWLVSDLHGSNTDVAVGNGIASVLVMLSIPVLGAISDVTRRRKPWVVGFTL
                     VAVLATVAIGAVGQYLIPPIGDSVLHPVAATGFVISGPPLVFVIAAFVIANYAYQGAL
                     PFYNAMMPELAPPDKWGRLSGLGAILGYTGSILGVLMIKPFFDGSLPVLGQLPGALTH
                     ALRTVFPLARSGGRVATFAPTALLYLIFSIPLFVFCRDHFPVRTRQNIPWRQAFHDVA
                     NTIRESRKYPGVLRFIIASFVYQDAMGTIISFMALYAVVAMGFRSGSETTLFVVLTIP
                     AVFGAWLWGRLTDRIGPKNTLMIVLCAWVVLLVAMIAAPSRQAFWIVGAMIGFIYGGV
                     NVAERPMLLRLIPDEEAGRFFGLMVLSARAAAIVGPLVWALAVDGLTPGFGKGIAYRA
                     GVATVAVAMCIALLILRGVPDNFPTTEKPAGVQ"
     gene            3338..>3780
                     /locus_tag="VLI40_10255"
     CDS             3338..>3780
                     /locus_tag="VLI40_10255"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HSU97604.1"
                     /translation="MARWLSGIGLNWFYSDIRITGLDRIPPDGPILVAMNHQNALVDA
                     MLALHIVPRELRITAKATLGESLAGTALMKAADIIPLSRASDSTAAPDPIRNRHSFQA
                     IIDELRIGGAVLVFPEGKSHNDPKLAPLKTGLARAALRAREVGIHG"
BASE COUNT          706 a         1145 c         1103 g          826 t
ORIGIN      
        1 gcgctcgaga ccggtgccgg tgcaatgcag cgtaacatcg gcattccatc caccactgcg
       61 tcggtgatcg aagccgttgt catactcgtt gtcatcgcga ttgcgcagtt gcgcgccaat
      121 cgggtgacga gagccgcatg atcgacgcga cctctgcgtt tctcgagggt gtgattcgca
      181 ctgcaactcc acttgcgttg gcagcgcttg gcgagaccgt caccgagcga agtggcataa
      241 tcaatatcgg gctcgaagga agcattatcg ccggcgcgtt gggtgctgtc attggtgccg
      301 cgcatggcgg agtctggggc ggcttcgcat tcgcggctgc atgtggctgc ggtgtcgctg
      361 ccatcttcgc actgttcgct gtcaccctgc gcgcggacca gataatatcg ggcacggccg
      421 tcactttgct ggcgctgggc ggaacgggaa cactctaccg tatcctgtat ggaagcgccg
      481 gcgccgctct caatacaccc acgctcgatc cgacggtaat accattgctg tcgcagatcc
      541 cggtggttgg ccgcgcattg ttcgtacagc cgtccatcac gtacttcctc tacgtgctca
      601 ttccggcggt tgcatggtgg atgtatcgaa cacacgccgg gctcggacta cgtgcgattg
      661 gcgagaaccc agcggccgcc atagccgccg gcgttcgcgc acggcgagtg caattccttg
      721 ccgtgctgtt cggtgggttg ctcggaggcg tgagcggtgg cacgctggta ctagcgcaag
      781 ccggcacctt cgtcgaaggc atgtccgccg gccgcggttt catagcgatc gccatagttg
      841 ttctcggacg atggaacccg ctcggcgccg cgctcgcagc tctcgtgttc ggggctgcaa
      901 gtgcgttgca gtttttcttt caggcaaccg gaagtaatct gccttatcag ctgtttctcg
      961 cctttccata cgtgctcacc ctcgtagcac tcgccgccac ccgcggaagg acaagctcgc
     1021 cggcggcatt gggaagacag gacttcgacc aggactagga gacggagtgg ggaccggtca
     1081 acggttgaaa ccgacgtaca gcatccgtgt gtccagcccg ggattcacgc gcccggtgtc
     1141 accgttcgat atgtgctgta atctgaatcc caaggtgagc gttcctgcgc tggagtggac
     1201 atacactccc gtgtgcccgt ccgcaaggaa gttgaaccgt gtctcatcgg gatctggaat
     1261 acggcgattg aagtaggcgg ctccgcctcc gccgccgagt acaatgccgg ttctgtctga
     1321 taagtggagt gttgcttcag cggcgatcgg tatcagcccc acgccgaacg cggttttctt
     1381 gtaaggcagg agtcccactc cgcctccatc gtaaaccacc ctctcgtatt ctctgttcgc
     1441 cgtcgcgatt accgctggaa cgagcgtcgg gacataccgt agttcgccaa atctccagcg
     1501 accgagcaat tgggaggcac tgattccggc cagaaataac gctcggtctt ccttgtgacc
     1561 ttcacgagtt tttatcggct cgtgagtgcc accagcgaac caccctccaa tcgaccagcg
     1621 acggctcact gcgcccgaat cgaccgccgg agccggaaca ccacacacct cgcctcgcgc
     1681 agcctgggca cccgactgag ccgacagaat ggccacagcc gccgccacga agatgacaga
     1741 aaattttaca tgtcggacta ccacatttga cgtgccgatc agacgcaaga actcgatccc
     1801 tcccggagca gtatcagtct tcactgaaag cgctatcgac ctgcgagccg taatttgaag
     1861 cccatgactg ccatagtaca tgacccctcc atgaccgaag agccgggtac agctctcgta
     1921 ctggatcagg ctcctgcaag agagcgctgg agctgggcac tatacgagtt cgcaaatacg
     1981 atcttctcga tgaatatcgc gactctgtac ttcgcggtat ggctggtctc cgatcttcac
     2041 ggctcgaata ccgacgtagc cgtcggcaac ggcatcgctt ccgtcctggt gatgttgtcc
     2101 atccccgtac tcggtgcgat ttctgacgta acgcgacgac gcaagccgtg ggtggttgga
     2161 ttcactcttg tcgccgtgct cgcaacagtt gccatcggcg ccgtcggcca gtacctgata
     2221 cctcccatcg gagattcagt gttgcatcct gttgcagcga ccggcttcgt gatttccggt
     2281 cctccactgg ttttcgtgat cgccgcattc gtgatcgcga actacgcgta ccagggagcg
     2341 cttccattct acaatgcaat gatgcccgag cttgcgccgc ccgataagtg gggacggctg
     2401 tcagggctcg gcgcgattct cggatacacc gggtcgatcc tgggcgtgct catgatcaag
     2461 cccttcttcg acggttcact ccccgtgctc ggacagctcc cgggcgcgct cacccatgcg
     2521 ttgcggacgg tatttcccct tgcgagatcg ggcggtcgtg tcgcgacctt tgcgccaacc
     2581 gcactactgt atctcatctt cagcatcccg ttattcgtat tctgtcgcga tcactttccg
     2641 gtgcgcacgc gccagaacat accatggcga caggcgttcc acgacgtggc aaatacgatt
     2701 cgcgaatcac gcaagtatcc cggtgttctc agatttatca tcgcctcgtt tgtgtatcag
     2761 gatgcgatgg gaacgatcat cagcttcatg gccctgtatg cagtcgtggc gatgggattc
     2821 aggagcggca gtgagacgac actatttgtc gtgctcacaa tcccggccgt gttcggagca
     2881 tggctttggg gtcgcctcac tgatcgcatc ggaccaaaga acacgctgat gatagtgctc
     2941 tgtgcctggg tcgtactgct cgttgcaatg atcgctgcgc catcccgcca agcattctgg
     3001 atagtaggtg cgatgatcgg cttcatctac ggtggagtga acgtcgctga gcgtccgatg
     3061 ctgctgcggc tgattcctga cgaggaagcg ggacgattct ttggactcat ggtgctctcc
     3121 gcgcgagccg cggcgattgt tggaccgttg gtctgggcgc tggctgtcga cgggctcaca
     3181 ccgggcttcg gcaagggcat tgcataccgt gccggcgtcg caacagtagc cgtcgccatg
     3241 tgcatcgcgc tgctcattct gcgtggcgta ccggacaact ttccgacgac tgagaagccg
     3301 gctggcgtac agtagccaaa ctggaatgat tcaacgattg gcgcgttggc tcagcggtat
     3361 cggtctgaac tggttctata gcgatatacg aatcacaggt ctggaccgca ttccgccgga
     3421 tgggccgatc ctggtggcga tgaaccacca gaacgccctg gttgatgcaa tgcttgcgct
     3481 tcacatcgta ccgcgcgagc tgcgaatcac cgccaaggct acgctgggcg agagccttgc
     3541 gggtaccgcc ttgatgaagg cagctgacat cattcccctg agccgcgcat cggatagtac
     3601 cgctgcgccg gacccgattc gcaaccggca ctccttccag gcaatcatcg acgaactgcg
     3661 aattggggga gcggtgctcg tatttcccga ggggaagagc cataacgatc ccaaactcgc
     3721 accactcaag acaggacttg cacgcgccgc gttgcgagcg cgcgaggttg gtattcatgg
//
LOCUS       DATIMD010000462         5254 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2497157, whole genome shotgun sequence.
ACCESSION   DATIMD010000462 DATIMD010000000
VERSION     DATIMD010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5254
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2497157"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VLI40_10260"
     CDS             <1..217
                     /locus_tag="VLI40_10260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97605.1"
                     /translation="NVVAALSINGPSARLRPDVLRDLVGPVCAAANRISHRLGATQEM
                     LGAPPVTRDVDAGSNKPGKSRATAISR"
     gene            222..1202
                     /locus_tag="VLI40_10265"
     CDS             222..1202
                     /locus_tag="VLI40_10265"
                     /EC_number="3.4.15.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR02069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009057 - macromolecule catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycinase"
                     /protein_id="HSU97606.1"
                     /translation="MEEIDVAEARTVRSSVRIARAVVFCGSALLLPVASVAAQSTRAT
                     RATLPARTDAVRGTLFIVGGGAQPPELVTQFIALAGGPGHARIAIFPMASEDTTTGPD
                     KKAQLDSMGAQSFVINVTRAQADADSIVKLIGTATGIWFPGGDQVRITRALQGSRALR
                     AIHERYRAGAVIGGTSAGAAIMSDSMLTGNQFFPGMKTAVDSGNSSRRIGRDVIEVIP
                     GLGFLHDAIVDQHFIKRMRENRLISVILERPSFIGVGIDESTALRVYPDGHWQVYGAS
                     AAVVFDARNATVTSRSAPRLGAAGMRVSVLPAGSTFDPRTGKATLPSGGK"
     gene            1432..4365
                     /locus_tag="VLI40_10270"
     CDS             1432..4365
                     /locus_tag="VLI40_10270"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSU97607.1"
                     /translation="MSDSSSQQPITGAQVQVVGTTLGAITNDLGVYVIRGVNASTVSV
                     RAQRIGFVPVTHEITVGAGVTANGDFALRPIATSLSQVVVIGYGSSSRRDVSGALSTV
                     SGSDVVGTPNAGIDAALQGKMPGVQVTQNAGNPGNGISVRIRGSSSVSASNQPLYVVD
                     GVPIQTEDFAQLGFDGQDLTGVTALNPDEIESITVLKDAASAAIYGSRASNGVVLITT
                     KRGQAGKARISFDAYTGMQQVSKRLPMLNAKQYIKYMGQGAVNDGYDPADYGLVSGVD
                     DTLNTDWQDAVFRQTPIENLNLALSGGSDRMKYYVSGTYFNQEGIVIGSSYQRANGRA
                     NLDFNATDRLSVSTSIGLTREQNYRIQGDGSLEGIVTNAIGNQPQFRVRNADGTFTNP
                     DDGLEYPNSVALATYNSSPTTTQRTLANVEAKYSLSNSLVFTGRAGADLLNLHERDWE
                     SPLVPGTYAASVNGVGKSGYSTGNRFLGEGFLTYNGKIGGNSTYTLTAGASAERNKDE
                     LNFIRGEQFSSPELHDAGSAASATAYDATRSQHNLVSYFSRANFSFLDRYLLTASLRK
                     DGSSRFGQNNRYGTFPAVSAGWVVTNEPFFHALTRLGSIKLRGSYGVTGNQGISNYAY
                     LATFGAANYGTAPGISPNNFANPNLKWEQTRETDFGFDWNMFSGRIALIGDYYNKKTT
                     NLLVNRPITGTSGFTQFFDNVGDVKNTGTELQLTTQNFVARNPGDFSWTTDLSFSTNK
                     NEVTALYGNQPLFGGVRSVNSVIVGAPLGAFYLQKFTGVNPQTGDAVYQDTNGDGSIT
                     ADDRVVAGNASPTYWGGFTNSFTWKNFDFRGFLQFSGGNKIFNAMRLFADDGGYAYDN
                     KLDYVLNAWQKPGDVTSEPRASFDGVSGARTVSTRMLESGSYTRLQEITIGYRLPGSM
                     SWLGGLHNTRLYVSGHNLATFTGYRGYNPDVNSNGSTSSIGLGTDFYAYPLARTYSVG
                     ISSEW"
     gene            4410..>5254
                     /locus_tag="VLI40_10275"
     CDS             4410..>5254
                     /locus_tag="VLI40_10275"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSU97608.1"
                     /translation="MRPRLLFLVLPLAVAGCSSILDVTPTSTVPEATAITDAAGARSA
                     LNGAYAGLQSLSYYGESYVNFPEVVSDNGNASGTLTSYADGDANAMTADNAEVTTMWN
                     SIYDDVNRANQIIAKVPDVTGLNTDDKNEVLGEAHFLRALDYHNLVRLWGGVPLRLEP
                     VESVTQAAEITRATPADVYKQILSDLGQAETLISNTDQTTQASLGAAYAIDARVRLYM
                     GDWTGAEAAAAKVEKMDYTLVSNFSDLFNANGNATSEDIFRVLFTPAQYNEVGYYYLT
                     KNLGGR"
BASE COUNT         1102 a         1577 c         1596 g          979 t
ORIGIN      
        1 aaacgtcgtg gcggcgctga gcatcaacgg ccccagcgca cgacttcggc cggatgtgct
       61 gcgcgacctg gtaggtcctg tctgcgccgc cgccaatcgc atttcacaca ggctcggcgc
      121 cacgcaggag atgctcggag caccgccggt aacacgcgac gtggacgccg gatcgaacaa
      181 gcccggcaag tcacgcgcaa ccgcgatttc ccgttaacag catggaggag atagacgtgg
      241 cagaggcaag gacagtcaga tcgtcagttc gcattgcacg cgcggtggtt ttttgcggct
      301 cggcgttgct gctgcccgtg gcgagtgtcg cggctcagag tacaagggct acaagggcca
      361 cgctgcctgc gcgcaccgat gcagtacgcg gcacgctgtt catagttggt ggcggcgctc
      421 aaccacctga gctcgttacg caattcatcg cgctcgccgg cggtcctggc cacgcgcgca
      481 tcgcgatctt cccgatggcg agtgaggaca cgacaaccgg acctgacaag aaggcgcaac
      541 tcgacagcat gggtgcgcaa tcgttcgtga tcaacgtgac gcgcgcgcag gctgacgccg
      601 attcgatcgt gaagttgatc ggcacagcca ccgggatctg gtttcccggc ggcgatcagg
      661 tgcgcatcac cagggccttg cagggatcga gggcgttgcg cgcgattcac gaacgttatc
      721 gcgccggtgc tgtgatcggt ggaacgtcgg ccggcgcagc catcatgagc gactcgatgc
      781 tcaccggcaa ccagttcttc cccggaatga agacggcggt ggattccggg aattcatcca
      841 ggcgcatcgg gcgcgacgtc atcgaggtca tcccgggcct tggatttctg cacgacgcga
      901 tcgtcgatca gcacttcatc aagcgcatgc gtgagaatcg gttgatcagc gtgatactcg
      961 agcggccatc gttcattggt gtcggcatag acgaaagcac cgcacttcgc gtttatccgg
     1021 acggccactg gcaggtttac ggcgcgagcg cggcggttgt gttcgacgca cgcaacgcaa
     1081 ctgtcacttc gcgcagtgcg ccgaggctcg gcgctgcagg aatgcgcgtg tctgtactac
     1141 cagctggaag caccttcgat ccgcgaaccg gaaaggcaac actcccatca ggaggtaaat
     1201 gatcccggag ttccagtctc gacacgatga tcgtgcacgc cgcaatgcgc gccggatctc
     1261 gtgttcaaca tcgtcacagt gcaggtctga ttcttttacc ggggaatgct cgtgaaatct
     1321 gtcagttacg tatggagata ctgtatcgcc accgtcgtcg gagtcgcgct cgtttcggcg
     1381 gcatcgccgc agcgggcgca ggcgcaggga acgggggtca ttcgaggtac cgtgagtgac
     1441 tcttcgagcc agcagccgat aacgggcgcg caggtacagg tcgtcgggac gacgcttggc
     1501 gcgatcacca acgacctggg tgtgtacgtg atcagaggcg tcaacgcgtc gacagtgagt
     1561 gtgcgcgcgc agcgaatcgg cttcgtaccg gtgacgcacg agataacagt tggcgcggga
     1621 gtcaccgcga acggcgattt cgcgttgcgt ccaatcgcga cttcgctctc gcaggtggtc
     1681 gtgatcggtt atggatccag cagccggcgg gacgtgagcg gcgcgctgag cacagtgagc
     1741 ggctccgacg tcgtcggaac gccgaacgcc ggaatcgacg ccgcgttgca gggcaagatg
     1801 ccgggtgtac aggtcaccca gaatgcaggt aatcctggaa acggcatctc ggtacgcatt
     1861 cgcggatcgt cgtccgtctc ggcgagcaat cagccactgt acgtggttga tggtgtgccg
     1921 atccagaccg aagacttcgc acagcttggc ttcgatgggc aggacctgac cggagttacc
     1981 gcactcaacc cggatgagat cgagtccatc accgtgttga aggacgcagc ttcggccgcg
     2041 atctacggat cacgcgcgtc caacggtgtc gtcctgatca caaccaagcg cggtcaggcg
     2101 ggcaaggctc gcatcagctt cgatgcctac accggcatgc agcaggtgtc gaagagattg
     2161 ccgatgctca acgcgaagca gtacatcaag tacatgggac agggcgcggt gaacgacggt
     2221 tatgatcctg cggattacgg cctcgtctcg ggtgtcgatg ataccctcaa caccgactgg
     2281 caggacgcgg ttttccgcca gacgccgatc gagaacctga acctggcgct gtccggcgga
     2341 agcgacagga tgaagtacta cgtatcaggt acgtacttca accaggaagg aatcgtcatc
     2401 ggctcgtcgt accagcgcgc aaatggtcgc gcgaatctgg acttcaatgc gaccgaccgt
     2461 ctctcagtga gcacttcgat cggtctcacc cgcgagcaga actatcgcat tcagggcgac
     2521 gggtcgctcg agggaatcgt cacgaacgcg atcggcaatc agccacagtt tcgcgtgcgc
     2581 aacgccgacg gaacgtttac gaacccggat gacggtctgg aatatccgaa cagcgtcgca
     2641 ctcgcgacgt acaacagctc gccgacaacc acgcagcgca cgctggccaa cgtggaggcg
     2701 aagtattcgc tatcgaattc gctggtattc accggaagag caggcgctga tctgctcaac
     2761 ctccacgagc gcgactggga gtcgccactc gttcccggca cgtacgcggc cagcgtcaat
     2821 ggcgtcggca agtcgggcta cagcaccggc aaccggttcc tcggcgaagg cttcctcacg
     2881 tataacggaa agatcggcgg gaacagcacg tacacgctga ctgccggcgc gagcgcggag
     2941 cgcaacaagg acgagctcaa cttcattcgc ggcgagcagt tcagcagccc cgagctgcac
     3001 gacgctggaa gtgccgcgag cgcgacggca tacgatgcca cgcgcagcca gcacaacctc
     3061 gtctcgtact tctcccgcgc aaatttctca ttcctcgatc gctacctgct gaccgcgagt
     3121 cttcgtaagg atggctcgtc ccgttttggt cagaacaatc gttacggtac cttcccggcg
     3181 gtgtccgccg gctgggtcgt caccaacgag ccgttcttcc acgcgctcac gcggctgggt
     3241 tccatcaagc tgcgcgggag ttacggcgtg acgggaaatc agggcatcag caattacgcc
     3301 tatctggcga ccttcggcgc ggcgaattat ggaaccgcac ccggtatctc gcccaataac
     3361 tttgcgaacc cgaatctcaa gtgggaacag accagggaga ccgacttcgg cttcgactgg
     3421 aacatgttca gtggtcgcat cgcgctcatt ggggactact acaacaagaa gacgacgaac
     3481 ctgctggtca acagaccaat cacgggtacc agcggcttca cgcagttctt cgacaacgtc
     3541 ggagacgtga agaacacagg taccgagctg cagctcacga ctcagaattt cgtcgcgagg
     3601 aatccggggg acttctcctg gaccactgac ctctcgttct ctaccaacaa gaacgaagtc
     3661 actgcgctgt acggcaatca accgttgttt ggcggtgtgc gtagcgtgaa ttccgtaatc
     3721 gtcggtgcgc cgctgggtgc gttctatctc cagaagttca ccggtgtcaa tccacaaacc
     3781 ggcgacgctg tctaccagga taccaacggt gacggttcaa ttaccgcgga cgatcgtgtc
     3841 gtggctggta atgcttctcc gacttactgg ggtggcttca ccaactcgtt cacctggaag
     3901 aacttcgact tccgcggttt cctccagttc agcggtggca acaagatctt caacgccatg
     3961 cgcctgttcg ccgacgacgg cggctatgcg tacgacaaca agctggacta cgtgctgaat
     4021 gcatggcaga agcccggtga cgtcacgagt gaaccgcgcg caagcttcga cggagtttcc
     4081 ggagcccgca cggtttcgac gcgcatgctt gaatcgggct cgtacacgcg gctccaggag
     4141 atcacgatcg gctatcgtct tccgggatcc atgtcgtggc ttggcggtct tcacaacacg
     4201 cgactgtacg tgtcgggtca caacctggcc acgttcaccg gctacagggg ctacaaccct
     4261 gacgtcaaca gcaacggatc cacctcgagc atcgggcttg gaaccgactt ttatgcctat
     4321 ccacttgccc gcacctactc ggtcggcatc tcaagcgagt ggtaaatatg aggcctgaca
     4381 tgcgaaatca atcacgagcc aattcactga tgcgacccag attgctgttc ctggtgctcc
     4441 cgctcgcggt agcaggatgt agctctatcc tggacgtgac tccgacgagc acggttccgg
     4501 aagcgacggc tatcaccgac gcagctggcg cacgctcggc gctgaacgga gcgtacgccg
     4561 gtctccagag cctgtcctac tatggcgagt cctacgtcaa cttcccggag gtcgtgtcgg
     4621 acaacggcaa tgccagcggg acgttgacgt cgtacgccga cggcgacgca aacgcgatga
     4681 cggcggacaa tgccgaagtc acgacgatgt ggaattcgat atacgatgat gtaaaccggg
     4741 cgaaccagat catagccaag gtcccggacg tcaccggtct gaacactgac gacaagaacg
     4801 aggtgctcgg cgaggcgcac ttcctgcgcg ctctggacta tcataatctg gttcgtctgt
     4861 ggggcggcgt gccgctccgt ctcgagccgg tcgagtccgt cacgcaggct gccgagatca
     4921 cgcgtgcaac gccagcggac gtgtacaagc agattctgag cgatctcgga caggcagaga
     4981 cgctgatcag caataccgat cagacgacgc aggcatcgct cggtgctgca tatgccatcg
     5041 acgcccgcgt aaggttgtac atgggtgatt ggacaggcgc agaagccgcc gcggcgaagg
     5101 tcgagaaaat ggactacacg ctcgtgtcga acttcagcga tctcttcaat gcgaacggga
     5161 atgccacatc ggaagacatc ttccgcgtgc tcttcacgcc tgcgcagtac aacgaggtcg
     5221 gctactacta tctcacgaag aaccttggtg gtcg
//
LOCUS       DATIMD010000463         3388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5677603, whole genome shotgun sequence.
ACCESSION   DATIMD010000463 DATIMD010000000
VERSION     DATIMD010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3388
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5677603"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(213..1499)
                     /locus_tag="VLI40_10280"
     CDS             complement(213..1499)
                     /locus_tag="VLI40_10280"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSU97609.1"
                     /translation="MNTESGAARDIPPRIDESAERLLRELAPQVLGVVARKCGDFADA
                     EDAVQEALIAAAMQWPAAGIPANPRGWLFSVAMRRLKDQIRSESARRRREDEVADERT
                     HDAPFAPPDDTEFGVTVDDTLVLLFMCCHPALSPSSAVALTLRAVGGLTTGEIAAAFL
                     VPEATMAQRISRAKQSIKASGVAFRMPDDQEREERLGAVMHVLYLIFNEGYTSSSGTA
                     LHRTDLSSEAIRLARMLRSSIPNNGEATGLLALMLLTDARRAARAGAHGELIPLDEQD
                     RSLWDRKLISEGVSLVSTAFASGLVGPYQLQAAIAAIHDESARVEDTDWPQIMALYGV
                     LKRMSNNPMIALNYAIAAAMVEGPAAGLVLLDELDTEEKLRGHYRLDAVRAHLYEMAG
                     DDVRATRHYRAAADGTASIPERDYLNMKAARVNAKS"
     gene            complement(1496..1909)
                     /locus_tag="VLI40_10285"
     CDS             complement(1496..1909)
                     /locus_tag="VLI40_10285"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSU97610.1"
                     /translation="MKYMMMMNTPAGTGDYQINNWSPDDFKAHIAFMHDFNRQLTEAG
                     EMVACEGLTPPAQARLVRAGKDGRPVTDGPFPETKEFLAGFWIIDVDSATRAYTLAAV
                     VSAAPGPGGAALNMAIELRPVMSAPPDPSAPALTR"
     gene            2096..2662
                     /gene="efp"
                     /locus_tag="VLI40_10290"
     CDS             2096..2662
                     /gene="efp"
                     /locus_tag="VLI40_10290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HSU97611.1"
                     /translation="MAMPATQIRRGMVLVFEGEPCRVVEFRHHTPGNLRAMVQAKLKN
                     IRTGNSFEHRFRAADSIEKAAMETHDLEFMYQGGDTYHFMNTENYDQIEMDEEALGDS
                     AQWMQPGMKIQAEYYNGNPIGIQLPNSLNLEIVDTAPVMKTATKTASTKPAKLSNGVT
                     INVPEFIAQGERVRVNPTTGEYMDRAKD"
     gene            2749..2822
                     /locus_tag="VLI40_10295"
     tRNA            2749..2822
                     /locus_tag="VLI40_10295"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2783..2785,aa:His,seq:gtg)
     gene            2855..2927
                     /locus_tag="VLI40_10300"
     tRNA            2855..2927
                     /locus_tag="VLI40_10300"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2888..2890,aa:Trp,seq:cca)
     gene            complement(2972..>3388)
                     /locus_tag="VLI40_10305"
     CDS             complement(2972..>3388)
                     /locus_tag="VLI40_10305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97612.1"
                     /translation="YKKDGAYPWLWESIRHATFDDMPQAYKDAYLAINPDSNALHAMF
                     ERDVARMRAFPEIRDEDLQAIEAPALIIAGDNDVVRPEHAVEMFRMMQHASLAIFPGG
                     HGDYMGEITTVKPAQNEYPVLPIVEAFLAETTKRDA"
BASE COUNT          649 a         1039 c         1020 g          680 t
ORIGIN      
        1 agatcgataa cctggattcc cgctttcgcg ggaatgacga cggacagatg gaccgtcgcg
       61 ttcgcgggaa tgacgacgga cagatggacc gtcgcgttcg cgggaatgac gacggacaga
      121 tggaccgtcg cgttcgcggg aatgacggct cttctgaaca tggattccca aggcgcgatg
      181 aatccgcgcc ctacagcggg aacgacggat cctcaagatt ttgcattcac tcgcgccgcc
      241 ttcatgttca gataatcccg ctccggaatg ctcgccgttc catcggcggc cgcgcgatag
      301 tgacgcgtcg cgcgcacgtc atcacccgcc atctcgtaca gatgcgcgcg aaccgcgtcg
      361 agtctgtaat gaccgcggag cttttcctcc gtatccagct cgtccaacaa cacgagaccc
      421 gctgcaggac cttccaccat cgccgctgcg atcgcgtaat tcagcgcgat cattggattg
      481 ttcgacatcc gtttgagaac tccgtacagc gccattatct gaggccagtc ggtgtcttcg
      541 acacgtgctg attcgtcgtg aatcgcggcg atcgcagcct gaagctggta cggaccaacc
      601 agtcccgagg cgaacgcggt ggataccagc gagacgcctt cgctgatgag cttccgatcc
      661 cacagtgacc gatcctgctc atccagcgga atcagctcac cgtgcgcacc tgctcgcgca
      721 gcgcgccgtg cgtcggtgag aagcatgagc gcgagcaatc ccgtggcttc tccattgttc
      781 ggtatcgatg agcgcaacat gcgcgcaagc cggatcgctt cgctggaaag gtcggtgcga
      841 tgcaatgcgg ttccactgct gctcgtgtac ccctcgttga atatgagata cagcacgtgc
      901 atcaccgcgc ccaatcgctc ttcgcgctcc tgatcgtcgg gcatgcgaaa cgcgactccg
      961 gacgccttga tgctctgttt ggccctgctg atgcgctgtg ccatcgtcgc ttccggaacg
     1021 agaaacgcag cggctatctc gccagtcgtg agtccgccga cagcacgcag tgtgagcgcg
     1081 actgccgacg aaggagaaag cgcgggatga cagcacatga agagcagcac gagcgtatcg
     1141 tcaacggtca caccgaactc cgtgtcatcc ggcggcgcga acggcgcgtc gtgtgtgcgc
     1201 tcgtccgcga cttcgtcttc acgccggcgc cgcgcgctct cgctgcgtat ctgatccttc
     1261 aggcgtcgca tcgcgacact gaagagccaa ccgcgcggat ttgctggaat gccggccgcc
     1321 ggccactgca tcgccgcagc gatcagcgct tcctgaaccg catcctcggc gtcggcgaaa
     1381 tcaccgcatt tccgcgcgac tacgccgagc acctgcggcg caagctcgcg cagcaagcgc
     1441 tcggcggatt catcgatgcg cgggggtatg tcccgcgccg cacccgattc ggtgttcaac
     1501 gcgtgagtgc gggcgcggat ggatcaggtg gagcgctcat gaccggtcgt agctcgatcg
     1561 ccatgttgag cgcagcgccg ccgggtccgg gtgctgcgga gactaccgcc gccagtgtgt
     1621 aggcacgcgt ggcgctgtcg acgtcgatga tccagaagcc cgcgagaaat tccttcgtct
     1681 ccgggaaggg accgtcggtt accgggcgcc cgtccttgcc ggcgcgcacc agcctggcct
     1741 gggccggcgg cgtcaggccc tcgcacgcca ccatttcacc ggcctcggtg agctgccggt
     1801 tgaagtcgtg catgaacgct atgtgtgcct tgaagtcgtc cggcgaccag ttgttgatct
     1861 ggtagtcccc ggttccggct ggcgtgttca tcatcatcat gtatttcatc gcttgatctc
     1921 ctctggttag gcgcccagac ggcgcttgcg tagagaagtc gtagccggca cccgattctc
     1981 tacatcctcg ctaaaaattg ccggaatcta ggtgccccac cagtggccgg ttgcctggaa
     2041 cgacccctcc tcgctacctt taaaggctat gtacgttttt ccgaggattt gactaatggc
     2101 gatgccagcc acgcagattc ggcgggggat ggttctcgtg ttcgagggtg agccgtgccg
     2161 cgtcgttgag ttccgacacc acacgcccgg caacctccgc gcgatggtgc aggccaagct
     2221 caagaatatc agaaccggca acagcttcga gcaccggttc cgtgctgccg attccatcga
     2281 gaaggccgcg atggagacgc acgacctgga gttcatgtat cagggtggcg acacctatca
     2341 cttcatgaac accgagaatt acgatcagat cgagatggac gaggaagcgc tgggtgattc
     2401 cgcccagtgg atgcagcccg ggatgaagat ccaggccgag tactataacg gcaacccgat
     2461 cggcatccag ctccccaatt cgctcaatct ggagatagtg gataccgcgc cggtcatgaa
     2521 gacagcgacg aagaccgcct cgaccaagcc agccaagctg agcaacggcg tgacgatcaa
     2581 cgtccccgag ttcatcgcgc agggcgagcg ggttcgtgtg aatccgacca ccggcgaata
     2641 catggaccgc gccaaggact gattggagct tccggggccg ccgtgttagt tgctggccct
     2701 cgattgctgg attagaatga aatgcctggg gcgacgtgcc ccgacatggt ggctgtagct
     2761 caattggtta gagcaccgga ttgtggttcc gggggttgcg ggttcaattc ccgtcagcca
     2821 cccctgtacg acttcggggt tggatgatca gtgtaggtcc gtagctcaat tggtagagca
     2881 ccggtctcca aaaccggggg ttgcaggttc gattcctgcc gggcctgtta cggtgagaac
     2941 gaaaaaatcg atgcacaagc aagcggggcg ctcaggcgtc ccgctttgtt gtttcggcaa
     3001 gaaacgcttc cacgatcggc agcactggat attcgttttg cgctggcttc acggtcgtga
     3061 tctcgcccat gtaatcgccg tgaccgccgg gaaatatcgc aaggctcgcg tgctgcatca
     3121 tgcgaaacat ctcgacagcg tgctcaggac gcacaacgtc gttgtcgccg gcgatgatga
     3181 gtgcgggggc ctcgatcgct tgcaaatctt catctctgat ctcggggaac gcccgcatgc
     3241 gcgcaacgtc tctctcgaac atcgcgtgaa gcgcatttga atcgggattg atcgccagat
     3301 atgcatcctt gtacgcctgc ggcatgtcgt cgaacgttgc gtgccgtatc gattcccaca
     3361 gccacggata cgcgccatcc tttttgta
//
LOCUS       DATIMD010000464         1501 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3939413, whole genome shotgun sequence.
ACCESSION   DATIMD010000464 DATIMD010000000
VERSION     DATIMD010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3939413"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..332
                     /locus_tag="VLI40_10310"
     CDS             <1..332
                     /locus_tag="VLI40_10310"
                     /inference="COORDINATES: protein motif:HMM:NF013995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HSU97613.1"
                     /translation="GAEPAGIVGTAEIVREGYPDFSAWDPSDEHYDPKSSESNPTWYM
                     VDIRAGDRFENFLDLPGLRHVRELEKMELLRKGSRLSVQPVRPDEWKTILRIGGVKSP
                     GARSKAR"
     gene            390..1028
                     /locus_tag="VLI40_10315"
     CDS             390..1028
                     /locus_tag="VLI40_10315"
                     /inference="COORDINATES: protein motif:HMM:NF025605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSU97614.1"
                     /translation="MSAEVTEPRWRRLPEERPQQILHAALEVFGEHGLAGARLEDIAR
                     QAGVSKGTIYLYFPNKEALFREMVRSTIVEAIVAGEGIPDTGSAREQLLAFMAHYWDF
                     VRTPAFSVIYRVVVSELHHFPDLVEFYSAEVIARTQKLLSGIIRRGIDAGEFRAVDPA
                     VAGRMLISLFSTSAMWCCKRKFFPHLRDRPDEQIYNELVDFYLSALRAVPHK"
     gene            1025..>1501
                     /locus_tag="VLI40_10320"
     CDS             1025..>1501
                     /locus_tag="VLI40_10320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97615.1"
                     /translation="MKGKSTTRLVLLSSLGVALSIAARPVMAQDTTTAHVPSTLSIGD
                     AARIAARNSAPALGARIRVTEAQARVRQSRADLLPSLSASASQFTRTLNTASFGFSLP
                     GLNPNGQIIGPFRVLDARGSVAAPLFNFGAFARYRAAGAAVKASSAAATVASEQAGA"
BASE COUNT          291 a          468 c          471 g          271 t
ORIGIN      
        1 ccggtgccga accagccggg atagtcggga cggcagagat cgtgcgtgag ggatacccgg
       61 atttttccgc gtgggaccca tccgacgagc actatgaccc caagagcagc gagtccaacc
      121 cgacctggta catggtagac attcgggccg gcgaccgatt cgagaacttc ctcgatctcc
      181 cgggcctgcg gcatgtccgg gaactggaga agatggagct gctcagaaaa ggaagccggc
      241 tctcggtaca gccggtccgg ccggatgaat ggaagaccat cctccggatc ggcggcgtga
      301 aatccccagg tgcgcgctca aaggctcgtt gacggcatgg ccggttctga gtatgttact
      361 gactggtcag taacatacgt aaaacgctta tgtccgcaga agttacggag ccgcgctggc
      421 ggcggctccc ggaagaacgc ccgcaacaaa tactgcacgc cgcgctcgag gtcttcggag
      481 agcacggcct tgctggcgca cgcctggaag acatcgcccg gcaggccggt gtctcgaagg
      541 gcaccatata cctgtacttt ccgaacaagg aagcattgtt ccgcgagatg gtgcgctcaa
      601 ccatcgtcga ggccatcgtc gcgggcgagg ggattccgga cacgggctcg gcgcgcgagc
      661 agctgcttgc gttcatggcg cactactggg atttcgtgcg cacaccggcg ttctcggtga
      721 tctaccgcgt cgtcgtaagc gagctgcatc acttccccga tctggtggag ttctacagtg
      781 cggaggtgat tgcccgcacg cagaagctgc tctccggcat catccgccgc ggaatcgacg
      841 ctggagagtt tcgtgcggta gatccggccg tcgcgggacg aatgctgata tcgcttttca
      901 gcacgagcgc gatgtggtgt tgcaagcgaa agttcttccc gcaccttcgc gaccggcccg
      961 acgaacagat atacaacgaa ctggtcgact tctacctctc cgcgctccgc gcggtacctc
     1021 acaaatgaaa ggcaaatcca ccacgcgcct ggtcctcctg tcgagcctgg gtgtcgcgct
     1081 gagcatcgca gcgcggccag tcatggcaca ggacacgacc acggcgcatg taccatccac
     1141 gttgtcgatc ggcgatgcag ctcgtatcgc agcgcgcaac agcgcgccgg cactcggagc
     1201 acggatacgt gtcaccgagg cacaggcgcg cgtgcgccag agccgagctg acctgttgcc
     1261 gtcgctgagc gcatcagcgt cgcaattcac tcgaaccctc aacacagcat cgttcggttt
     1321 ctcgcttccc ggtctcaatc cgaatggaca gatcatcggt ccgtttcgcg tgctcgatgc
     1381 gcgcggaagc gtggcggcac cgttgttcaa ttttggcgcg ttcgcacggt accgcgccgc
     1441 tggcgcggcc gtgaaagcga gcagcgccgc tgcgacggta gcatcggaac aggccggcgc
     1501 g
//
LOCUS       DATIMD010000465         3417 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2209219, whole genome shotgun sequence.
ACCESSION   DATIMD010000465 DATIMD010000000
VERSION     DATIMD010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2209219"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..451
                     /locus_tag="VLI40_10325"
     CDS             <1..451
                     /locus_tag="VLI40_10325"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSU97616.1"
                     /translation="SEPRLGINVQQPAPNLVEPKLPALQAYQLSLSAPTPPAGSFDAT
                     AAARGQVVFAGAGKCAQCHVGQDFSDGNTRLHALSEIPTDPAYALRTATKQWRTSPLK
                     GVWQHPPYFHDGSAATLADVVERYNSKLALNLTAQQKADLVEYLKSL"
     gene            606..1028
                     /locus_tag="VLI40_10330"
     CDS             606..1028
                     /locus_tag="VLI40_10330"
                     /inference="COORDINATES: protein motif:HMM:NF015085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HSU97617.1"
                     /translation="MKASTKFLTGGALILGVAGYLMASSISKTATYYLTPTELSTKVA
                     TDPTFYNTGVKVGARVVSGSILRQPGGRETSFRMTDGTHTYNVDYRGITPDTFTDSVD
                     VVVEGRLGRDQVFHATTLLAKCASRYENAPDRPARSQT"
     gene            1068..3107
                     /locus_tag="VLI40_10335"
     CDS             1068..3107
                     /locus_tag="VLI40_10335"
                     /inference="COORDINATES: protein motif:HMM:NF027651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HSU97618.1"
                     /translation="MILVGELSLWVALLMAVWTATVSFAGGSLKRQDLIASAERGTYA
                     TFAMVVLASAGLWTAIFTHDFSFKYVASYTSANLPKAYLFTAFWGGQAGSMLFWVLIL
                     TFFSSLAVLTSRSRNRELMPYVIGTLAVIAIFFLATLCFGSNPYERLDWLPVDGRGMN
                     PQLQNPGMAIHPPNLYLGYVGTSIPFAFAIAALVTRRLDAEWLVAVRRWALVSWFFNT
                     TGIVLGMWWAYVELGWGGYWAWDPVENASLLPWLTTTAFLHSVMVQEKRGMLRKWNVT
                     LVICSFLLSIFGTFITRSGVISSVHSFAQSPVGNWFAGFLGVAIIVSVYLVTTRLKDL
                     KANAVLESMVSREAAFLYNNLVLVGIAFSVLWGTLFPILTEAVRGTKITVGPPFFNAV
                     NVPLGLLLLLLTGIGPLIAWRRASIANLRRQFTFPAAALVIVPALLFAAGMRSMSAII
                     AYAFAGFVTATILQEFYKGIGARHSMYSESIPVAFVHLIARNRRRYGGYIVHAGVVII
                     FCAFAGLAFKTEHDLTVSAGDTKTLVDPFGHTWSFTSQGVSRYDVLNREVTAVALETR
                     RDGKPMGVITSEKRQYFSGNDPNNRVPTFEPATAVGIMGSFRQDVYVTLAGVTGQDTG
                     EIRITFNPLVRWVWLGGMCMAIGGLIVMWPQAERRRKQGGYVTTLRPDAIPAEIA"
     gene            3104..>3417
                     /locus_tag="VLI40_10340"
     CDS             3104..>3417
                     /locus_tag="VLI40_10340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97619.1"
                     /translation="MMMGRRQFLLSVASGLGVAGVARVAGAQGSANSMDMDMSAATYK
                     PVRLPPKPNATPLLSDAQRDDLEHHLHCQCGCNLDIYTCRTTDFSCPVSPPMHVDVMG
                     LIA"
BASE COUNT          626 a         1027 c         1069 g          695 t
ORIGIN      
        1 ttcggagccg cggttgggga tcaacgtcca gcaaccggca cccaacctcg tcgagccgaa
       61 gcttccggca ctgcaggcat accaactgag cctgagcgcg ccaacgccgc ctgcgggatc
      121 gttcgacgcg accgctgcgg cacgcgggca ggtggttttt gccggcgcgg gaaagtgcgc
      181 ccagtgccac gtgggccagg atttctccga tggcaacacg cgtttacacg cactgtcgga
      241 gataccgacc gatccggcgt acgccttgcg aacggcaaca aaacagtggc gcacgtcgcc
      301 gctcaaggga gtctggcagc atccgccgta cttccacgac ggcagcgccg cgacgctggc
      361 ggacgttgtg gagcggtaca attccaaact cgcgctgaat ctcaccgccc agcagaaggc
      421 cgacctggtg gagtacctca agtcgctatg accacgggtc cggattcccc gcggcgcgat
      481 cgcgccattc gacatgccgg gtggcgccgc cgagcggctg gcgaccgccg ctcggcggga
      541 gaggtgcacg gtttccccgc cggccgctcc atttgcggct gtacgagacg atatatttcc
      601 acgctgtgaa agcgagcacc aaattcctga ctggcggtgc gctgatcctc ggcgtggccg
      661 gatatctgat ggcaagctcc atcagtaaga cggcgacgta ttatctcacg ccgaccgagc
      721 tttcgacgaa ggtcgcgacc gacccgacgt tctacaatac gggcgtgaag gtcggtgcgc
      781 gtgttgtcag cggctcgatt ctacgtcagc ctggtggacg cgagacgtca ttccgaatga
      841 ctgacggaac acacacgtac aacgtggact accgcggcat cacgccggat acgttcactg
      901 acagcgtcga cgtcgtggtc gaaggcagat tggggcgcga ccaggtattt catgcgacga
      961 cacttctcgc caagtgcgcc tcgcggtatg agaacgcgcc ggatcgtcca gcgcgcagtc
     1021 agacgtgatg acggcgcggc aatgaccgcg ccctacttct ccttacaatg attctcgttg
     1081 gtgagctgtc gctgtgggtc gccttgttga tggcggtctg gacggcgacc gtgtcttttg
     1141 ccggcggctc gctcaagcgc caggatctta tcgcgagcgc agagcgtgga acgtacgcca
     1201 cgttcgcgat ggtggtgctc gcttccgccg gactgtggac ggcgatcttc acccacgact
     1261 tctccttcaa gtacgtcgca tcgtacacca gcgcgaatct ccccaaggcc tatctgttca
     1321 cggcattctg gggcggtcag gctggatcga tgttgttctg ggtgctgatc ctcaccttct
     1381 tctcgtcgct cgcggtgctg acgagtcgca gccgcaatcg cgagctgatg ccgtacgtga
     1441 tcggaacgct cgctgtcatc gcgatcttct ttctcgccac actctgtttc ggatcgaatc
     1501 catacgagcg gctggactgg ctgccggtgg acggacgcgg gatgaatccg cagctgcaga
     1561 atccgggaat ggcgatccat ccgccgaatc tctatctcgg ttacgtcgga acgagcattc
     1621 ctttcgcttt cgcgatcgca gcactggtaa cgcgccggct cgacgcggaa tggctggtcg
     1681 cggtacgacg ctgggcgctc gtcagctggt tcttcaatac gacgggcatc gtacttggca
     1741 tgtggtgggc atatgtcgag cttggctggg gcggttactg ggcctgggat ccggtcgaga
     1801 atgccagcct gctaccgtgg ctgacgacga ctgcattcct ccactccgtc atggtgcagg
     1861 aaaagcgcgg catgctccgc aagtggaatg tgacactcgt catctgctca ttcctgctgt
     1921 cgatcttcgg aaccttcata acgcgaagcg gagtgatatc cagcgttcac tcattcgccc
     1981 agtcgccggt tggcaactgg ttcgccggat tcctcggcgt cgcgataatc gtgagcgtgt
     2041 acctggtaac cactcgtctc aaggatctca aggccaacgc ggtgctcgag agcatggtga
     2101 gtcgcgaggc tgcgttcctg tacaacaatc tcgtgctggt gggaatcgcg ttttccgttt
     2161 tgtggggcac attgttcccg atcctcaccg aagcggtgcg gggtaccaag atcacggtcg
     2221 gcccgccctt cttcaacgcg gtcaacgttc cgctcggact gttgctgctg ctgctgaccg
     2281 gaatcggacc gctgatcgcg tggcgcaggg cgtctatcgc gaatctgcgc cgccaattca
     2341 cgtttccagc ggctgcgctc gtcatcgtgc cggcgctgct gtttgcggcg ggaatgcgga
     2401 gcatgtcggc gataatcgca tacgcgttcg cgggcttcgt tacggcgacc attctgcagg
     2461 agttctacaa gggtatcggc gcgcggcatt cgatgtacag cgaatcgata ccggtggcat
     2521 tcgtgcacct catcgcgcgc aaccgccgcc gatacggcgg ctacattgtg cacgccggtg
     2581 tggtgatcat cttctgtgca ttcgcggggc tcgcgttcaa gacggagcac gatctcaccg
     2641 tttccgccgg cgataccaag acactggtcg atccgttcgg acacacgtgg agcttcacga
     2701 gtcagggtgt atcgcgctac gacgttctca atcgtgaagt aacggcagtc gcgctggaga
     2761 ccaggcgcga cggaaagccg atgggcgtca ttacaagtga gaagcggcag tacttctccg
     2821 gcaacgatcc gaacaatcgc gttccgacct ttgaaccagc aactgccgta ggcatcatgg
     2881 ggtcgttcag acaggatgtg tatgttacgc ttgccggcgt cacaggacag gacacgggcg
     2941 agatacgcat cacattcaat ccgctggtgc gctgggtatg gctgggcggt atgtgcatgg
     3001 cgatcggcgg actcatcgtg atgtggccgc aggccgagcg gagaagaaag cagggcgggt
     3061 atgtaacgac gctgcgcccg gacgcgatcc cggcggaaat cgcatgatga tgggacgcag
     3121 gcagtttctg ctttccgtcg cgagtggcct tggtgttgcc ggcgtcgcac gcgtcgccgg
     3181 cgcacaggga tcggcgaact cgatggacat ggacatgagc gccgccacgt acaagccggt
     3241 gcgactgccg ccaaagccga acgccactcc gctgctgagc gatgcacagc gagacgatct
     3301 cgaacaccac cttcactgcc agtgcggctg taacctcgac atttatacgt gcaggacaac
     3361 tgatttcagc tgtcctgtct caccgccgat gcacgtggac gtgatggggc tgattgc
//
LOCUS       DATIMD010000466         2846 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5104009, whole genome shotgun sequence.
ACCESSION   DATIMD010000466 DATIMD010000000
VERSION     DATIMD010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2846
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5104009"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(72..1070)
                     /locus_tag="VLI40_10345"
     CDS             complement(72..1070)
                     /locus_tag="VLI40_10345"
                     /inference="COORDINATES: protein motif:HMM:NF017864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HSU97620.1"
                     /translation="MSPAASYDIDVVVTRGSAEESVHRVSAAVVADDALIGYAGNPGI
                     ETYWRSCAKPFQLMPFMSSGHLDEIGWGADEIALACASHGGEPEHVAIAERMLSDLGL
                     EEGDLACGAAEPLSQRGQRLLRESGGRTTRLHNNCSGKHAAMLACAKTAGWPTAGYDH
                     LDHPVQQAIVQTIENWTGTPRSHMRIARDGCGVPVFGISLEAMARAFARFAAAIDRDD
                     DVPARIGNSMICNPFLVGGTDRFDTVVMSEAPGVVCKIGAEGVHSAAIVSDGIGIALK
                     VEDGASRAQYPALLALLQHLGALPDPLPQRLAEIARKPVRDTRHEVVGEIVVRAMI"
     gene            complement(1074..2051)
                     /locus_tag="VLI40_10350"
     CDS             complement(1074..2051)
                     /locus_tag="VLI40_10350"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HSU97621.1"
                     /translation="MRRSEIITRDALRVAALAIVALAILTYAIIRLGEAARLFTRRYS
                     LYAFVPNASGLREGGQVTVAGQLAGSISKIEFLPVDNDTTRNLKITVQIDESLQQQVR
                     MDSRVMLRNQGLLGDRFFDITPGTPRFRALHEGDTLVLGPSIGYDVMIQRAAAVLADV
                     AGLTHDLRGLTQSVARGDGTIGKLLTDRAMYDRLNATLESTSALLARLQNPNGTVGRF
                     LDDPQLYTNLTEMVTQVDSLMTKLNSGKGTAGKLLQDDSLYSNLVTVTARADSLVSSL
                     SKGNGTASRLLSDTTLYNQMVQAVQHLNEILADVKKNPKRYTKGAIKIF"
     gene            complement(2052..>2846)
                     /locus_tag="VLI40_10355"
     CDS             complement(2052..>2846)
                     /locus_tag="VLI40_10355"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU97622.1"
                     /translation="LSEDDADAVPRPRAEDPGPLQDAIIELERVYLAFDRPILEDVSF
                     AAFPGETVVIVGESGTGKSTTLKLILRLLQPDSGRVYVNGNDIAGLSFTEALAVRQGM
                     GMVFQSAALFDSMTVFENVAYPLREHTNLSDDEIGERVREKLRFVDLDPDEVTKLAPS
                     ELSGGMQKRVGIARGLAANPGIMLYDEPTSGLDPLTTGVITNLIMKLQRELHVTSVVV
                     THDIRSAFRMSSKIALLHDRRIVFFGSPEEMAASDDDYIQTFLGGY"
BASE COUNT          527 a          894 c          892 g          533 t
ORIGIN      
        1 gtgttggaat tcataatgtc aacgatacgt caagtcacgc acggcgccac ggcgcatctg
       61 tgcgcgacga atcagatcat tgcgcgaacg actatctcac ccacgacctc gtgacgagta
      121 tcgcgcaccg gcttgcgggc aatttcggca aggcgttgtg gcaaggggtc aggcaatgca
      181 ccaaggtgct gcaacagcgc gagcaacgcc ggatactgtg cgcgcgacgc gccgtcctcg
      241 accttgagcg caatgccgat cccgtcactc acgatcgccg cggaatgaac gccttcagcg
      301 ccgatcttgc aaaccacgcc cggcgcctcg ctcatcacga cggtatcgaa ccgatccgtg
      361 ccgccgacga ggaaagggtt gcagatcatc gagttgccga tacgcgcggg aacgtcatcg
      421 tcccggtcga tcgccgccgc aaaacgcgca aaggcgcgtg ccatggcttc gagactgata
      481 ccgaatacag gaacgccgca cccgtcgcgc gcgatccgca tgtgggagcg aggggtgccg
      541 gtccagtttt cgatcgtttg aacgatggcc tgctgcaccg gatggtcgag gtgatcgtac
      601 cctgccgtag gccagccggc ggtcttggcg caggccagca tcgcggcatg cttgcccgag
      661 cagttgttgt gaagccgggt cgtccggccg cctgattccc gcagcagccg ctgtccacgc
      721 tgcgacagcg gctcggccgc gccacatgcg agatcgccct cttcaagccc cagatcactc
      781 agcatccgct cggcgatcgc cacatgttcg ggctcgccgc cgtgggaagc gcacgccagc
      841 gctatctcgt cggcacccca gccgatctcg tccaggtggc ccgagctcat gaacggcatg
      901 agctggaaag gtttggcgca cgaccgccag tacgtctcga tcccgggatt cccggcgtaa
      961 ccgatcaggg cgtcgtccgc gacgactgcg gcggaaacgc gatggacgga ttcctccgcg
     1021 ctcccgcgcg tgacgactac atcgatatca taggaagcgg caggactcac cccttaaaat
     1081 atcttgatcg ctcccttggt gtagcgtttc gggttcttct tgacgtcggc cagtatctca
     1141 ttcaggtgct ggacggcctg caccatctga ttgtagaggg tcgtgtcgct cagaagtctg
     1201 gacgcagttc cgttgccctt gctgagcgac gagaccagtg aatcggcgcg cgccgttacc
     1261 gtaaccaggt tgctgtagag cgagtcgtcc tggagcagct ttccggccgt ccccttgccg
     1321 gaattgagct tcgtcatgag cgagtcgacc tgggtcacca tctcggtgag gttggtgtac
     1381 agctgcggat cgtccaggaa cctgccaacg gttccgttgg gattctgcag acgcgcgagc
     1441 agcgcgctgg tcgactccag tgttgcgttg agcctgtcgt acatggcgcg atcggtgagc
     1501 agcttgccga tggtgccgtc tccgcgcgca acggactgtg tgagtccgcg caggtcgtgc
     1561 gttagaccgg ccacgtccgc gagcacggcc gcggcgcgct gaatcatcac gtcgtatccg
     1621 atggagggac cgagcacgag tgtgtcgcct tcgtgaagcg cccggaacct gggagtaccg
     1681 ggcgttatgt cgaagaatcg atctccgagc aggccctggt tgcgcagcat gacgcgcgag
     1741 tccatgcgca cctgctgctg cagactctcg tcgatctgaa cggtgatctt gagattgcgc
     1801 gtggtgtcgt tgtccacagg cagaaactcg atcttgctga tggagcccgc gagctgaccc
     1861 gcgacggtca cctgtccgcc ctcgcgcaat ccgctggcat tgggaacaaa ggcgtacagc
     1921 gagtaccgcc gagtgaacag gcgcgcggct tcaccgaggc gaatgatcgc atacgtgagt
     1981 atcgcgagcg cgacgatcgc gagtgcggcg acgcgcagcg catccctggt gatgatctcg
     2041 gagcgtctca ttcaataacc gccgaggaaa gtctgaatgt agtcatcgtc cgatgcagcc
     2101 atctcttcgg gcgacccgaa gaatacgatg cgtcggtcgt ggagcagagc gatcttgctg
     2161 gacatgcgaa acgcggatct gatgtcgtgc gtgacgacga cactcgtgac gtgcagctcg
     2221 cgttgcaact tcatgatgag attcgtgatt acaccggtcg tcagcggatc gagccccgag
     2281 gtgggctcgt cgtagagcat tattcccgga ttcgccgcaa gcccgcgcgc gataccgacg
     2341 cgcttctgca tcccgcccga cagctccgac ggcgcgagct tcgtcacctc gtcggggtcg
     2401 agatcgacga agcgcagctt ctcgcgcacg cgctcgccga tctcgtcgtc gctgagattg
     2461 gtgtgctcgc gcagcggata tgcgacgttc tcgaacaccg tcatggagtc gaacagcgcg
     2521 gcgctctgga acaccatgcc catcccctgg cgaacggcga gtgcctcggt gaacgacagc
     2581 cccgcgatat cgtttccgtt tacatagacg cgtccgctat ccggctggag caggcgaaga
     2641 atgagcttga gcgtcgtcga ctttcccgtc cccgactcac cgacgatgac gacagtttcc
     2701 cccggaaacg ccgcgaacga cacgtcctcg agaatcgggc ggtcgaaggc cagatacacg
     2761 cgctcgagct cgatgatggc atcctggagc ggaccggggt cttcggcacg tgggcgcggc
     2821 accgcatcgg cgtcatcctc cgacag
//
LOCUS       DATIMD010000467         1541 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_189989, whole genome shotgun sequence.
ACCESSION   DATIMD010000467 DATIMD010000000
VERSION     DATIMD010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189989"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1196
                     /locus_tag="VLI40_10360"
     CDS             <1..1196
                     /locus_tag="VLI40_10360"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HSU97623.1"
                     /translation="VRPLSDGRVAVLLRESPFYAESGGQVSDGGEIVGNGWRVAVDDV
                     RKLDGKPIAIGKPTGAVARGAVRAAVPHDVRLDTERNHTATHLLHAALRETLGEHVHQ
                     AGSLVAPDRLRFDFTHTGPLTREQIERVEGIVNRGVLAAVPVVTTERPYQDAVSSGAM
                     ALFGEKYGDVVRVVDIPSLSRELCGGTHVRNTAEIGLFSIVSESGIAAGVRRIEAITG
                     TRSYEAARDRERLLVEIADAVKATPATVLRRVHTVLDERRALEKRVSELMRGGGTSGP
                     VQQLLDGAKSVNGLRLVAREVASSDAKSLQELAEAARENAADAVLILVSAMDGGKNAV
                     IAAAGDVARERGARADVIVKTLAQEFGGRGGGKPALAQGGVPSSEVFPALLARAEAIV
                     AEQIG"
     gene            1193..1540
                     /locus_tag="VLI40_10365"
     CDS             1193..1540
                     /locus_tag="VLI40_10365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97624.1"
                     /translation="MTEAQESLGAWLDRALESAPQELAVRIRAVLPPDWRTAPVADAS
                     TLLADAAARELRGLLERGCEERWAAPGLLVVDALVTYACELVALSGGDIEAGTAAILN
                     TIAATLPPEQSTT"
BASE COUNT          257 a          461 c          549 g          274 t
ORIGIN      
        1 cggttcgacc gctgagcgac ggacgtgtag ctgtattgtt gcgcgaatcg ccattttacg
       61 ccgagtccgg cggacaggtt tcggacggcg gcgagattgt cgggaacgga tggcgcgttg
      121 cagtcgatga tgtgcgcaag ctggacggca agccgatcgc gatcggaaag ccgaccggcg
      181 cagttgcgcg cggtgccgtt cgcgctgccg ttccgcatga cgtgcggctg gacactgagc
      241 ggaaccatac tgcaacgcat ctgctgcacg ccgcgctgcg tgagacgctt ggcgagcacg
      301 tgcaccaggc cggctcgctc gtcgcgcccg atcggctccg cttcgacttc acccacaccg
      361 gaccgctcac gcgcgaacag atcgagcgtg tggaggggat cgtcaaccgc ggcgtgctcg
      421 cggccgttcc cgtcgtcacc accgagcgtc cgtatcagga tgcggtgtcg tccggtgcga
      481 tggcactgtt tggcgagaaa tacggcgacg tggtacgcgt ggtcgatatt ccgtcgctgt
      541 cgcgcgagct gtgtggtggc actcacgtac gaaataccgc tgagatcggc ctgttcagca
      601 tagtcagcga atcggggatc gcggcgggcg tgcgccgaat cgaagcgata accggaaccc
      661 gctcgtacga agctgcccgc gatcgtgagc gattgctcgt tgagatcgcc gatgccgtca
      721 aggccacgcc cgctactgtc ctgcggcgag tgcacaccgt tctcgatgag cgtcgtgcgc
      781 tcgagaagcg cgtctccgaa ctgatgcgtg gcggcgggac gagcggcccg gtacagcagt
      841 tgctcgatgg cgcgaaatcg gtcaacggct tgcgactggt cgcgcgtgaa gtagcgagct
      901 ccgatgccaa gtcgttgcag gagctggccg aagcggcgcg cgagaacgcc gcagacgctg
      961 ttctcattct ggtgagcgcg atggatggtg gcaagaacgc tgtgatcgcg gctgccggcg
     1021 atgtcgcaag ggagcgtgga gcgcgcgcgg acgtgatagt gaagaccctg gcacaggagt
     1081 tcggcgggcg cggcggtggc aagcctgcac tggcccaggg cggcgttcca tcttctgagg
     1141 tgttcccagc gctactcgcg cgcgccgagg cgatagtcgc cgagcagatc gggtgacgga
     1201 agcgcaggag tctctcggag cgtggctgga tcgtgcactc gaatccgcgc cgcaggaact
     1261 tgcagtgcgc atccgggcgg tgcttccacc tgactggaga actgctccgg ttgcagatgc
     1321 atccacgctg ctggcggacg ccgctgcgcg cgagcttcgc ggcctgctcg agcgcggatg
     1381 cgaggagcga tgggccgcgc cgggattgct cgtggtggat gcgctcgtta cctacgcatg
     1441 cgagctcgtt gcactttccg gcggcgatat agaagcgggc accgctgcga ttctcaatac
     1501 cattgcggcg acgttgccgc cggaacagtc gaccacgtga t
//
LOCUS       DATIMD010000468         3723 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3080311, whole genome shotgun sequence.
ACCESSION   DATIMD010000468 DATIMD010000000
VERSION     DATIMD010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3723
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3080311"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..191
                     /locus_tag="VLI40_10370"
     CDS             <1..191
                     /locus_tag="VLI40_10370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97625.1"
                     /translation="LSPEKGARTTVYLAASPDVQGVTGQYFDKCKPASTIELSHDVAL
                     QERLWATSVALTGVGADI"
     gene            194..853
                     /locus_tag="VLI40_10375"
     CDS             194..853
                     /locus_tag="VLI40_10375"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HSU97626.1"
                     /translation="MTNSSLGVARRNAMAVALFALFALAGCGASIRPLEPLPAPAPAP
                     ESYPSGGTASVPVDAEDISYFDANPLMVPVEGVQPSGVSDSFNDRRDNGRTHRASDIL
                     VPKGTPVVAAESGTIMRLSRNALGGITIYMMDESGRFIFYYAHLEGYADGLVPKEHVL
                     QGDLLGYVGMTGNAPVPHLHFQAMRRDPNRRDYWNSPAVDVRTFFTIPGKVRASDEQQ
                     R"
     gene            850..1149
                     /locus_tag="VLI40_10380"
     CDS             850..1149
                     /locus_tag="VLI40_10380"
                     /inference="COORDINATES: protein motif:HMM:NF014087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhbY family RNA-binding protein"
                     /protein_id="HSU97627.1"
                     /translation="MNSKERANLRAEAQRLSPLVHVGHGGVTDAIVKTMDDVLRTHEL
                     VKVDISRNLTAPIKEVAGALADATGAEVVQVIGRKATLFRDNPELEWKGNVPPWR"
     gene            1384..1647
                     /gene="fdxA"
                     /locus_tag="VLI40_10385"
     CDS             1384..1647
                     /gene="fdxA"
                     /locus_tag="VLI40_10385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HSU97628.1"
                     /translation="MPYVITEACIGVKDRACVDVCPVDCIYEGEKQLYIHPDECIDCG
                     ACEPECPVTAIFPEEDVPQNMRSYIALNADVFKGPNPPGKPQR"
     gene            1745..3031
                     /locus_tag="VLI40_10390"
     CDS             1745..3031
                     /locus_tag="VLI40_10390"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ectonucleotide
                     pyrophosphatase/phosphodiesterase"
                     /protein_id="HSU97629.1"
                     /translation="MKSLRRPHRLPLGLPHRLHRSVAASVVATLAIIVSACATAPVRP
                     AARVSAAGAPAQVILVSMDGFRRSYLDTDSVPTLHALGRDGVTAQAMIPSFPTLTFPN
                     HYTIVTGLYPEHHGIVGNSIYDPEFRALFTMSNAASKESRWWGGQPIWVTAEKQGERA
                     ASMFWVGSEVEIDSVRPTRWKPFDAKVPFDARVDTVLSWLDLTGAQRLSLVTLYFDEP
                     DHTGHDAGPDSPRTAAAAARADSALGRLVQGLRSRGIYDKVNLIVVSDHGMSQLSPDR
                     VVYLDDVVDTASIRITSLSPDLMITPRDGDAPALLAKIRKLPHVSAWLKADVPERLHY
                     NEGRRITPIVAVADDGWTIATHGARRGPAGGAHGYDNANASMNAIFVAHGPAFRQGVT
                     MQSFPNVDVYDLLAKLLRLQPAPNDGSLQPFADVLR"
     gene            complement(3055..>3723)
                     /locus_tag="VLI40_10395"
     CDS             complement(3055..>3723)
                     /locus_tag="VLI40_10395"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF018649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HSU97630.1"
                     /translation="MNEPQKEVVTKAAPAPAAVSLSAAERTPAARAGAVLFRHRGWLP
                     ILFLGIPLVAPGSMSPQLWVIGIALVVVGEAWRLWGVAAAGTSTRRRSRNVNRLVTYG
                     PFAWSRNPLYNGNFLIWMGFAVISGVFWFLPVAIVLFGIEYSLIVRFEEGVLESTFDG
                     EYLDYKSATPRWLPRPPSSPVAGEFDWPQAWRSEVSTFLQYAVLIIAFIIKSRYGIGG
                     KPMP"
BASE COUNT          715 a         1148 c         1180 g          680 t
ORIGIN      
        1 tgctgtcgcc ggagaaaggg gcgcgcacga ccgtctatct cgccgcatcg cctgacgtgc
       61 aaggcgtgac cgggcagtac tttgacaagt gcaagcccgc aagcacgatt gaattgagcc
      121 atgacgtcgc gttgcaggaa aggctgtggg cgacgagtgt tgcgctcact ggtgtcggag
      181 cggatatctg accgtgacga acagctcgct cggggtcgcc cgcagaaatg cgatggcagt
      241 cgcgctgttc gcactgttcg cactggcggg atgtggcgcg agcatacgtc cgctggagcc
      301 gctgcctgca cccgcaccag cgcccgagtc ctacccatcg ggtggaacgg ccagcgttcc
      361 cgtggatgcg gaagacatat cgtacttcga cgccaatccg ctgatggttc cggtggaggg
      421 cgttcagccg agtggtgtct cggacagctt caacgaccgc cgcgacaacg gacggaccca
      481 tcgcgcgagc gacattctgg ttcccaaggg gacgccggtg gtggccgccg agtcgggtac
      541 gataatgcgg ttgagcagga acgcactggg tgggatcacc atctacatga tggatgaatc
      601 gggccggttc atcttctact atgcgcatct cgaaggatat gccgacggac tcgtccccaa
      661 ggagcatgtc ttgcagggcg atctgctcgg ttatgttggg atgacgggaa acgcaccggt
      721 tccgcatctg cactttcagg cgatgcggcg cgatcccaac cggcgcgact actggaacag
      781 tcccgcggtc gacgtcagaa cgttcttcac aattcctgga aaggtacgcg ctagcgatga
      841 acaacagcga tgaacagtaa ggagcgagcg aatctgcgtg ccgaagcgca gcgattgagt
      901 ccgctggttc acgtcggaca cggcggcgtc acggacgcga tcgtaaagac gatggacgac
      961 gtgctgcgga cgcacgagct ggtgaaggtc gatatcagcc gcaatctgac cgcgccgatc
     1021 aaggaagtcg ccggcgcgct ggccgacgcg accggggccg aagtggtgca ggtgatcggg
     1081 cgcaaggcaa cgttgttcag ggacaatccg gagctggagt ggaagggcaa cgttccgccc
     1141 tggcgttgag ggccgctggt acgcgagtca gtttgcggac agcatcattc tcgcgacggc
     1201 gcgcgctcac cacgccatgc tctggacgca ggatgagcac ttcgacggga ttccagggac
     1261 gaagtgcatc tccaggctct gattgcgggg actgcagtcc ttcagcgttg aaatctgcgc
     1321 cccctggcct atctttcata agattgtccg atcgctccac cgaaggccga accaacctgc
     1381 gaaatgccct acgtaattac tgaagcctgc atcggcgtga aggaccgtgc ctgcgtcgac
     1441 gtctgccccg tggattgcat ctacgagggc gagaagcagc tatatatcca tccggatgaa
     1501 tgcatcgact gcggtgcatg cgagccggag tgtcccgtga cggccatctt cccggaagaa
     1561 gacgttccgc agaacatgcg gtcgtacatc gcgctcaacg cggacgtgtt caaggggcca
     1621 aatccgcccg gaaagcctca acgctagagt cgcgtttttt cgtatctgcg gggcgccttc
     1681 gggcgccttt gctgttcccg gcctcgtcgc gccattctcg acgcattccc caatcggaca
     1741 tcagatgaaa tcgttacgtc gcccgcaccg tctgccgctc ggcctgccgc accgcctgca
     1801 tcgctcggtt gccgcgtcag tcgtcgccac acttgcaatc atcgtctccg cgtgcgcgac
     1861 ggcgcccgtg cggccagccg cacgtgtatc ggcggccgga gcgccagctc aagtgatact
     1921 cgtctcgatg gacggcttca ggcgcagtta tctcgacacc gactccgtgc cgacgcttca
     1981 cgcgctcggc cgcgatggcg taacggctca ggcgatgatt ccgtcgtttc ccacactcac
     2041 ctttccgaat cactacacca tcgtcaccgg gctctatccg gagcaccatg gcatcgtggg
     2101 gaacagcatt tacgacccgg agttccgcgc gctgttcacg atgagcaatg ctgcttccaa
     2161 ggagagccgg tggtggggcg gtcagccgat ctgggtcacc gcggagaaac agggtgagcg
     2221 cgcggcatcg atgttctggg tgggttccga agtcgagatc gacagcgtgc ggcccacgag
     2281 atggaagccg ttcgacgcga aggttccgtt cgacgcacgc gtcgacaccg tgctttcatg
     2341 gctcgatctt accggcgcgc agcgtctgtc gctcgtcacg ctgtatttcg acgagccgga
     2401 ccacacaggc catgacgcgg gaccggattc accaaggact gccgcagccg cggcgcgtgc
     2461 cgatagcgca ctgggcagac tcgtccaggg actgcgttca cgcggtatct acgacaaggt
     2521 gaatctgata gtcgtctccg accacggcat gtcgcagctg tcaccggatc gcgtggtgta
     2581 tctcgacgac gtggtggata cggcgtcgat caggatcact tcgctgtcgc cggatctcat
     2641 gatcacaccg cgcgacggcg atgcgcccgc gctgctcgcg aagatcagga agctgccgca
     2701 cgtgagcgcg tggctcaagg ctgacgttcc ggagcgtctg cactacaacg aaggccgcag
     2761 aatcacaccg atcgtcgcag tcgccgatga tggctggacc atcgcgactc atggtgctcg
     2821 tcgcgggcct gctggtggtg cgcacggtta cgacaacgcc aacgcgtcga tgaatgcgat
     2881 attcgtcgcg catggccccg cgttcaggca gggagtgacg atgcagtcgt tcccgaacgt
     2941 ggacgtctat gatctgcttg cgaagctgct tcgcctgcag ccggcgccga acgacggatc
     3001 gctgcagccg ttcgcggacg tgctgcgttg atgccctgat ccgctgatcg cgaatcaggg
     3061 catcggcttt ccgccgattc cgtagcggct cttgatgatg aaggcgatga tgagcaccgc
     3121 gtattgcaga aaggtgctca cttcgctgcg ccacgcctgc ggccagtcga attcgcctgc
     3181 gacgggtgac gatggcggac gcggaagcca gcgcggtgtc gctgacttgt agtcgagata
     3241 ttcgccgtcg aaggtgctct ccagcacgcc ttcctcgaat cgcacgatca gcgagtactc
     3301 gattccgaag aggacgatcg ctaccggcag aaaccagaac acgccggaga ttacggcgaa
     3361 gcccatccag atcagaaagt ttccgttgta gagcggattg cggctccacg cgaacggacc
     3421 gtaggtgacg agcctgttga cgttgcgcga gcgtcgccgc gtcgaagttc cggcagcagc
     3481 cacaccccag agccgccacg cttcgccgac gaccacgaga gcgataccga tcacccagag
     3541 ctgtggcgac atcgagccag gcgccacgag cggaataccg aggaagagaa tcggcagcca
     3601 gccacgatgc cggaacaaca ccgcgccagc tctcgcggcg ggcgtccgtt ccgcggccga
     3661 gagcgacacc gccgccggtg ctggcgccgc cttcgtcaca acctctttct ggggctcatt
     3721 cat
//
LOCUS       DATIMD010000469         4035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1350805, whole genome shotgun sequence.
ACCESSION   DATIMD010000469 DATIMD010000000
VERSION     DATIMD010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4035
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1350805"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..310)
                     /locus_tag="VLI40_10400"
     CDS             complement(<1..310)
                     /locus_tag="VLI40_10400"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97631.1"
                     /translation="MKERNVFMTRRIPDVAIPILREAGATVTVGQSDEEKGLTTAELL
                     AGVRAADVLLSLLTEPITREVLNSNSRLLGVANYAVGFNNVDVSAATELGIPVSNTPG
                     V"
     gene            complement(339..1637)
                     /locus_tag="VLI40_10405"
     CDS             complement(339..1637)
                     /locus_tag="VLI40_10405"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSU97632.1"
                     /translation="MIHFADRITTLGTENAFSVGADIAKVAGRGIDVVKLNIGEPDFD
                     SAAHINEAAIAEIRRGNSHYCDPQGVIGLREAICNHILESRGLRVTPDRVVVTTGGKP
                     GIGFTIQAYANPGDEVIYPSPGFPIYESWITYAGAKPVPLHLREESGFTFTPDDLAAL
                     ITPRTRVIFLCSPSNPTGGVLSRTELEGIARVIRERAPRDVRVYSDEIYEQCIFDGAT
                     HHSIAAEEEMEGRTIISSGHSKGFAMTGWRLGFTVLPTAAEAAIFKQLTINTVSCVPP
                     FIQEAGRVALTSPESAPEIAKMVAAFQERRDWIVPALNAMPGVRCQNPKGAFYVFPNV
                     AGLCEQLGIIDAYNALPAARRDRTAPSAMLQMYLLYSYGVATMDRNSFGKIGANGQHF
                     LRLSIATSLGRLKEGMERICEASRNPKAFARFMDEEKLYS"
     gene            complement(1728..2258)
                     /locus_tag="VLI40_10410"
     CDS             complement(1728..2258)
                     /locus_tag="VLI40_10410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HSU97633.1"
                     /translation="MVPVRRALRLLLDGKAEIVETDADKLIRSERLSIPHPAVIRLTR
                     FIHVPRKFRRQVTNTFLFARDRYTCQFCGRKQSVLKGRESLTRDHLIPLSRGGLNVWT
                     NVVTACSPCNTRKANHLPSEIGMHPLAAPFEPHFVQLAWAVRRLTPAQSKYIEIFYGR
                     ATLDDLRSIDSTLAAS"
     gene            complement(2389..3318)
                     /locus_tag="VLI40_10415"
     CDS             complement(2389..3318)
                     /locus_tag="VLI40_10415"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HSU97634.1"
                     /translation="MSTHKIWRDGTFVDWQDATIHVMSHVVHYGSSVFEGIRCYDTPD
                     GPAIFRLQDHMRRFLDSCRIYRMPMQHSLDELMSACSEVVSENDLKACYLRPVALRTG
                     EEMGVLPFKAPVETFIIPWIWGRYLGHEALEAGVDVCVSSWRRPAPDTMPTLAKAGGN
                     YLNSQLSKMEARGNGYVEGIMLDSFGFVAEGSGENLFIVRDGTLYTSTISSSILNGIT
                     RDSVIRIAKDLGYSVSEQSIPREMLYIADEAFFSGTAAELTPIRSVDKQEVGTGKPGP
                     ITLAIQEVYMGIATGKMPDRYGWLTRVESRVTA"
     gene            complement(3322..>4035)
                     /locus_tag="VLI40_10420"
     CDS             complement(3322..>4035)
                     /locus_tag="VLI40_10420"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSU97635.1"
                     /translation="AKWHARRGISVRARARSPIALLADLGAMPPGSLLIHAVNADSTD
                     IRTIVRHGACIAHCPTSNAKFGHGIAPLDAFLSAGIAVGLGSDSVASNNRMDLLDEAR
                     MAVLSANLRARSPNALGARQAVALATIGGARAVGSAKVCGSLEPGKSADIAVFRLDSS
                     RANPSPDPEAALAYAMGGSRAFLVVVAGRHLVEQGELTMQPGALHRRVSASGHALHSW
                     RSQQLTGEPLAASRSHPLV"
BASE COUNT          789 a         1261 c         1213 g          772 t
ORIGIN      
        1 gcacgccggg tgtgttggac accggaattc cgagctccgt cgcggcactc acgtcgacgt
       61 tgttgaaccc gaccgcgtag ttcgcaacac cgagcaagcg cgaattggaa ttcagcacct
      121 cgcgcgtgat cggctcggtc agcagggaca gcagcacgtc ggcagcgcgc actcccgcga
      181 gcagctcggc ggtggtgagt cccttctcct cgtccgattg accgacggtg acggtggcgc
      241 cagcctcgcg aaggatcgga atcgcgacat ccggaatcct gcgcgtcatg aaaacgtttc
      301 tttctttcat cgtcctgcgg gttgagtgat ggaactggtc agctgtacag cttttcctca
      361 tccatgaagc gcgcgaaggc tttgggattc cgggaggcct cacagattct ctccattcct
      421 tccttcaggc gtccaaggct ggtcgcgatc gagaggcgca ggaaatgctg gccattcgca
      481 ccgatctttc cgaacgaatt gcgatccatc gtcgcgacgc catagctgta caacagatac
      541 atctggagca tcgccgacgg ggcggtgcgg tcccgtcgcg cggcgggaag tgcattgtag
      601 gcgtcgatga tcccgagttg ctcgcacagt cccgcaacgt tggggaagac gtagaatgca
      661 cccttcgggt tctgacaccg cacccccggc attgcattga gtgcagggac gatccagtcg
      721 cgacgctcct gaaatgctgc aaccatcttc gcgatctccg gcgccgattc gggactcgtc
      781 agcgcgaccc ggcccgcttc ctgaatgaat ggcggaacgc acgagacggt gttgatcgtc
      841 agctgcttga agatcgcagc ttcggccgca gtgggaagaa cggtgaagcc caggcgccag
      901 cctgtcattg cgaatccctt ggaatgtccc gaggagatga tagtgcggcc ttccatttcc
      961 tcttccgcgg cgatgctgtg atgcgtcgct ccgtcaaaga tgcactgctc gtagatctca
     1021 tccgagtaca cccgaacgtc gcgcggcgcg cgctcccgta tcacgcgagc gattccttca
     1081 agctcggttc tggaaagcac accgccagtt ggattggacg gtgagcacag gaaaatcacg
     1141 cgagtgcgcg gcgtgatgag cgcggccaga tcatcgggcg tgaaggtgaa tccggattcc
     1201 tcgcgcaggt gcaacggtac gggtttcgca cccgcgtagg taatccatga ttcgtaaatg
     1261 ggaaaacccg ggcttggata tatcacctcg tcgcccgggt tcgcgtacgc ctgaatcgtg
     1321 aatccaatgc caggcttccc gcctgtcgta acgacgacac gatccggagt cacgcggagc
     1381 ccgcgcgatt ccaggatgtg attgcagatt gcctcccgca gaccaatgac tccctgcggg
     1441 tcgcagtagt gcgagttccc gcgcctgatc tcggcgatcg ccgcttcgtt tatgtgggcc
     1501 gcgctgtcga agtcgggctc gccgatgttg agcttgacca catcgatacc gcggccggcg
     1561 actttggcga tgtcggcgcc gacactgaat gcgttctccg tgccaagcgt cgtgattcga
     1621 tcagcgaaat gtatcattgc aatggttgca tgtacgttga gcgcaccgga gcgcactcaa
     1681 cagagtggat cggcatcgtc gagcaacgac gcccgcggca ctaccgttca gcttgccgcg
     1741 agcgtcgagt cgatcgacct caggtcatcg agcgtggcgc gtccatagaa gatctctatg
     1801 tacttggact gcgccggcgt aagacgacgc accgcccatg ccaactgaac gaaatgcggc
     1861 tcgaacggcg cggcgagcgg atgcatcccg atctcgctcg gaagatggtt ggccttgcgc
     1921 gtgttgcacg ggctgcacgc cgtgacgacg ttggtccaca cattgagacc cccgcgagac
     1981 agtgggatca gatgatcgcg cgtgagcgac tcgcgtccct tcaggacgga ttgcttgcgg
     2041 ccgcagaact gacacgtgta acgatcacgt gcgaagagga acgtgttcgt cacctggcgc
     2101 cggaacttgc gcggcacgtg gatgaaacgc gtgaggcgaa tgaccgcggg gtgcggaatc
     2161 gagaggcgtt cggatcggat caacttgtcc gcatccgtct ccacaatctc cgccttccca
     2221 tcgagcagga gtcggagcgc acgacgtacc ggaaccatcg tcagaggttc gaacgaagcg
     2281 ttgagagcaa gacaaccggc gctcataatc tccctgtcgc ggtaagcgac aacccacgtt
     2341 gctgcacggg gcgaggactg tgcatcctcg ccccgcgcga attcatggtc aggccgtaac
     2401 tctactctcc acgcgagtga gccagccata cctgtcgggc atcttgccag tcgcaatgcc
     2461 catataaact tcctgaatcg cgagcgttat cggacccggt ttgccggtcc cgacctcctg
     2521 cttgtccacc gacctgatcg gcgtcaactc ggcagcggtg ccgctgaaga atgcctcatc
     2581 cgcgatgtac agcatctcac gcggaatgct ctgctccgaa acgctgtaac ccagatcctt
     2641 cgcgatccgg atcacgctgt cgcgtgtgat tccgttcagg atcgacgatg agatggtgga
     2701 cgtgtagagc gtgccgtcgc gcacgatgaa cagattctcg ccactccctt cggcaacgaa
     2761 gccgaaggaa tccagcatta tcccttcgac gtaaccgttc cctcgcgctt ccatcttgga
     2821 aagctgcgag ttgagataat tgccgcctgc cttggcgagc gtcggcatcg tatccggcgc
     2881 cggacgacgc cagctcgata cacacacgtc cacgccagcc tcgagcgcct cgtggccgag
     2941 atatcgtccc cagatccacg ggatgatgaa cgtctcgacc ggcgccttga atggcagtac
     3001 ccccatctcc tccccggttc gcaatgcgac cgggcgaaga taacaggcct tcaaatcgtt
     3061 ttccgatacg acttcgctgc acgcgctcat cagctcatcc agcgagtgct gcatcggcat
     3121 gcgatagatg cggcacgaat cgaggaatcg gcgcatgtgg tcctgcagcc ggaagatcgc
     3181 gggcccgtcg ggcgtgtcgt agcaacggat tccctcgaaa accgaggacc cgtaatggac
     3241 tacatggctc atgacgtgga tcgtcgcatc ctgccaatcg acgaacgtcc cgtcccgcca
     3301 gattttgtgc gtgctcatga cctaaactaa agggtgggag cggcttgccg cgaggggctc
     3361 gccggtcagt tgctggcttc gccagctatg aagagcgtgt ccggaggcgg acacacgcct
     3421 gtgaagggcg ccgggttgca tcgtcagttc gccctgttcg accagatgac gacccgcgac
     3481 cacaacgaga aacgcccgac ttccgcccat cgcgtacgcg agcgcggcct ccggatcggg
     3541 actcggattg gcgcgtgagc tgtccaggcg gaacaccgcg atatcggcac tcttgccggg
     3601 ctccagggat ccgcatacct tcgcgctccc caccgccctg gcgccaccga tggtcgccag
     3661 cgcgaccgcc tggcgagcgc cgagagcgtt tggcgaccgg gcgcgcaggt tggcggatag
     3721 caccgccatc cgtgcctcgt ccagcagatc catacgattg ttgctggcta ccgaatccga
     3781 gccaaggcca acggcgattc cggccgagag gaaagcgtcc agcggcgcga tcccatgtcc
     3841 aaatttcgca ttcgacgtcg ggcagtgcgc gatacatgca ccatgtcgaa cgatcgttct
     3901 aatgtcagtc gaatcagcgt tcaccgcatg gatgagcaac gatccgggcg gcatcgcacc
     3961 caggtccgcc agcagcgcga tgggcgatct tgcgcgagct cgcaccgaaa ttccacggcg
     4021 agcgtgccac ttcgc
//
LOCUS       DATIMD010000470         3415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2211369, whole genome shotgun sequence.
ACCESSION   DATIMD010000470 DATIMD010000000
VERSION     DATIMD010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3415
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2211369"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..903
                     /locus_tag="VLI40_10425"
     CDS             <1..903
                     /locus_tag="VLI40_10425"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HSU97636.1"
                     /translation="SGVVLMQVVRRIWSTEEPVRSNDTSAIAANRPCTKAVILARGLG
                     KRMREADTDVALDPAQAAAAESGIKGMMPVGRPFLDYVLSSLADAGFTDVCIVVAPDH
                     EEMASYYASQVTPKRLRISFAVQSAAIGTADAVLAAEEFTAGEPFVVLNSDNYYPPAP
                     LTRLRLANGPATLGFSRAGLLRGNIPPERIAAYALLDVAPDGTLRKISEKPDASLLAT
                     MGDDVDVSMNCWRVTSEFFRACRDVQPSPRGELELPLAVQYAIDILGMRFKVIPVNEA
                     VLDLSRRSDIPRVAALLSGVEVSL"
     gene            936..2273
                     /locus_tag="VLI40_10430"
     CDS             936..2273
                     /locus_tag="VLI40_10430"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase family protein"
                     /protein_id="HSU97637.1"
                     /translation="MSIAESDAKSRKISQLVHDLARLRGQPAVASSQPLAFWVPGRIE
                     VLGKHTDYGGGRSLLCAVERGICLVTSPRTEHAPARAKNTLRILDANSGEIAELELSP
                     DIEPVPGHWSNYPITVVRRIAMNFPGPMRGADVVFASDLPPAAGVSSSSALVVAFFLA
                     LSAINDLPARQEYRDNIHTPEDLAGYLGCVENGLDFKSLHGRAGVGTFGGSEDQTAIL
                     CAQPNSLVQYSFCPVTFERAIPLSDDLIFVIATSGVLAEKTGSALELYNRVSRRLSVG
                     LECWNRATGRMDSSMGAAIATSPDARARIRDILSAATNAAYPAESLVRRFEQFDSEAN
                     EIIPHAADALARGDIAAFGAYVAESQRGAERALENQIPETVALVRLARSMGADAASAF
                     GAGFGGSVWALVDSSLAQDFQHEWMERYHRAFPERADRSDFFVTRAGPAATAL"
     gene            complement(2315..>3415)
                     /locus_tag="VLI40_10435"
     CDS             complement(2315..>3415)
                     /locus_tag="VLI40_10435"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSU97638.1"
                     /translation="LLAQDSDDAPLRPGRTDVVRVMNLHKAKGLEARVVILAAPVPVP
                     DFPPEVHITRGESGSASGGIVVSAGDRTVAQPVGWAAMADVECRFADAERERLRYVAA
                     TRAMSELVIARCEYPRLKTSTEDRPDTSAWSPFGEVLTAIDRQTVMQPTAAPGRRVTD
                     RTLTEIVEAIAAATLRVTRASESSIRHRTVTESAREQREAARAYDLPRDAGRGVAWGR
                     AVHRCIEAAGCGRAGPSLRAFAAAVASDEKLDDNDVSELEALIVDLQQSDIWKRLTGG
                     GSARFELPVMHVSDGDVVPVLTEGVIDAATLTDDEWLVVDWKTDSASGDAWASRKARY
                     DRQVGAYEEILTALSRHPATSAIHRVRGSDVE"
BASE COUNT          601 a         1115 c         1031 g          668 t
ORIGIN      
        1 agcggcgtcg tgctgatgca ggtcgtgagg cgcatctggt ccaccgagga gccggtgcgc
       61 agcaacgaca cttccgcgat cgcggcaaat cgtccgtgca caaaggccgt gattctggct
      121 cgcggtctcg gaaagcgaat gcgcgaggcg gacaccgatg tcgcgctcga tcccgcacaa
      181 gcggcggcgg ccgagtctgg aatcaaggga atgatgcccg ttggccggcc gttccttgat
      241 tacgtgctga gctcgctcgc tgacgccggg tttaccgacg tctgcatcgt cgttgcaccg
      301 gatcatgagg agatggcgag ctattacgcc agtcaggtca ctccaaagcg gctgcgcatc
      361 tcgttcgccg ttcagtccgc ggccatcggc accgccgatg cagtgctcgc tgcagaagag
      421 tttaccgcgg gcgagccatt tgtggtactc aactcggaca actactatcc gccggctccg
      481 ctcacgcgtc tccgcctggc taatgggccg gcgacgctcg gcttctcgcg cgcgggactg
      541 ttgcgcggaa acattccacc tgagcgtatc gcggcatacg ccttgctcga tgttgcgccc
      601 gatgggacgc tacgcaagat ctccgaaaag ccggacgcat cattgctcgc cacgatggga
      661 gacgacgtcg acgtgagcat gaactgctgg cgcgtcacgt ccgaattctt tcgcgcgtgc
      721 agagacgtgc aaccctcacc gcgcggcgag ctcgagctgc cactcgcggt ccaatacgca
      781 atcgacattc tcgggatgcg cttcaaggtc atcccagtga atgaagcggt tctcgatctc
      841 tcgagacgct cggatattcc gcgggtcgct gctctgctct ctggcgtcga ggtgtcgctc
      901 tgaccgatgt agcggctcgg ctgaacgctg ctggaatgag catcgccgaa tcggacgcca
      961 agtctcgaaa gatttcgcag cttgttcatg acctcgcgcg tctccgcggg cagccagcgg
     1021 ttgcttcatc gcagccgctg gcattctggg ttccgggacg aatcgaggtt cttggcaagc
     1081 acacggacta tggcggtggc cgcagtctgc tgtgcgccgt ggagcgcgga atatgcctgg
     1141 taacgagccc ccgcactgag catgcgccag cacgcgcaaa gaacaccctg cgcatactgg
     1201 atgcgaattc gggtgaaatc gccgaactcg agctgtcgcc cgacatcgag ccagtaccgg
     1261 ggcactggtc caattatcct atcaccgttg tgcgccgcat cgcgatgaat tttcccggac
     1321 caatgcgcgg tgccgatgtc gtatttgcga gcgaccttcc gccagccgcc ggcgtgagca
     1381 gctccagcgc tctggtcgtc gcattctttc tggcactttc tgccatcaac gatcttcccg
     1441 cgcgccagga gtaccgcgac aacatccaca cccccgagga tctcgccggc taccttggat
     1501 gcgtcgagaa tggcctcgat ttcaagtcac tgcacggccg tgcaggcgtc gggacgttcg
     1561 gcggcagcga agatcagacc gcaatcctct gcgcgcaacc caattcgctc gtacagtact
     1621 cgttctgccc tgtgacgttc gagcgggcga tcccgctttc ggacgatctc atattcgtaa
     1681 tcgcgacgag cggcgttctt gcggagaaga cgggctccgc gctcgagctc tacaatcgtg
     1741 tctcacgtcg cctgagcgtc gggctcgaat gctggaaccg cgcgaccggc cggatggatt
     1801 catcaatggg tgcggcgata gcgacgtcgc ccgatgcccg tgcgcggatc agggacatac
     1861 tcagcgccgc taccaacgca gcgtatccgg ccgagtcgct ggtacgacgg ttcgagcaat
     1921 tcgactccga ggcgaacgag atcattccgc acgccgcgga cgcactcgct cgtggagaca
     1981 tcgctgcatt tggagcatat gtagcggaat cgcagcgtgg agcggagcgt gcgctcgaga
     2041 atcagattcc tgagacggtc gcgcttgtgc gcctcgctcg ctccatgggt gccgatgccg
     2101 catcggcgtt tggcgctggc ttcggaggca gtgtgtgggc actggtcgac tcatcgctcg
     2161 cccaggattt tcagcacgag tggatggagc gctatcatcg agcgtttccg gagcgcgccg
     2221 acagatcgga ttttttcgtc acacgagccg gccccgcagc tacagcgcta tagcgtcggt
     2281 gtttgcccgt gctcgccatg gccacgacgc tccgctattc cacgtcactc ccacgcacgc
     2341 gatgaattgc actcgttgct gggtgccgcg atagcgccgt cagtatctct tcgtaggccc
     2401 cgacctgcct gtcatacctt gccttgcggc tcgcccacgc atcgccgctt gccgagtcgg
     2461 ttttccaatc cacgaccagc cattcatcat cagtcaacgt agcagcatcg atgacgcctt
     2521 cggtgagcac cggtacgacg tcgccatccg aaacgtgcat gacgggtagc tcgaagcgcg
     2581 cgctaccgcc gcccgtcaat cgcttccaga tgtcggactg ctgcagatcg acgatcaacg
     2641 cctcgagctc ggaaacgtcg ttatcgtcca gcttttcatc agatgcgacg gcagctgcaa
     2701 aggcgcgaag cgatggaccg gcgcgcccgc atcccgcggc ctcgatgcac ctgtgaacag
     2761 ctcgccccca ggccacgccg cgccccgcat ctcgcggcag gtcgtacgca cgcgctgctt
     2821 cgcgctgctc ccgagccgat tccgtaaccg tacgatgcct gatggaagat tcgctcgctc
     2881 gtgttacgcg gagggtcgca gccgcgatcg cttcgacgat ctcggtgagc gtgcgatccg
     2941 ttacgcggcg gcccggtgct gcggtcggct gcatcactgt ctgccggtcg atcgcagtca
     3001 gtacctcacc gaacggcgac cacgccgacg tgtccggcct gtcttccgtg gatgttttca
     3061 acctggggta ttcgcagcgt gcgatcacca gctcgctcat cgcgcgcgtc gcggcaacgt
     3121 agcgcaaccg ttcacgctcc gcgtctgcaa atctgcactc cacgtcggcc atcgccgccc
     3181 atccgacagg ttgagcaacg gtgcggtcgc ctgccgagac gacgattccg ccactcgcag
     3241 aaccggattc gccgcgtgtg atgtgcactt caggagggaa atccggtacc ggtaccggcg
     3301 ccgcaaggat cacgaccctg gcctccagcc cttttgcctt gtgcaggttc atcacgcgaa
     3361 caacatctgt tcgacccgga cgaagcggag cgtcgtcgga atcctgggcg agcaa
//
LOCUS       DATIMD010000471         3701 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1351548, whole genome shotgun sequence.
ACCESSION   DATIMD010000471 DATIMD010000000
VERSION     DATIMD010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3701
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1351548"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1024
                     /locus_tag="VLI40_10440"
     CDS             <1..1024
                     /locus_tag="VLI40_10440"
                     /inference="COORDINATES: protein motif:HMM:TIGR04514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GWxTD domain-containing protein"
                     /protein_id="HSU97639.1"
                     /translation="SVRVPTFRETSRTDESVIYRRAFRLVPGNYALTYAVRDGSGQRS
                     AGQRQSISVPKLSSPALSTLEPIYEAKPRRTLDSLPSYLPAPRASYVFGVDDSVGVYL
                     ESYGTPGPVSFEVRTPDGKVAWQGNRTLPTQGAGFASGVVTVPLVHADVGIGTIVATL
                     PGSPDSIGTRIFVGFGPDLPVLSFKDMLGYLRFFSTPGKTKPLYDAKPEERGARWTEF
                     LRATDPNPSTPQNEALDEYFGRIRDANATFITDTPRGWLSDRGMVFVTLGAPTNSYED
                     YGSMYMGDIGVVNQMSTRVRILVWEYTQYQTRIIFYDPNDTRQWRLTRPSMAVFQSLL
                     ARTTNR"
     gene            1025..>3701
                     /gene="polA"
                     /locus_tag="VLI40_10445"
     CDS             1025..>3701
                     /gene="polA"
                     /locus_tag="VLI40_10445"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HSU97640.1"
                     /translation="MEVELPQSPRLFLVDGYALIYRAFFALISRPLTTSRGENTSAAW
                     GIANFLQRLLNSHRPEYLGWVHDSGLSFRHERYPAYKATREKLTEELQSDFDRGMERV
                     SSLLDAYGIPILSLEGYEADDVIGTLVTKSVHAGVNVVVISGDKDFQQLVRPGVWLLN
                     PGRGGPASVEEHWVGVENGAERLGVPPSFVTDYLSLVGDSSDNVPGVKGIGDKTACEL
                     VGTYGHLEEILAHASEITKKRPREALLEHAENARLSKELVTIRDDLPVDLDLDALKVG
                     APDNAALAQLYVELEFHTFAKEAAGAVETPKVTESAKYRTVETVAEVARVVRKARKAR
                     TIAVDTETTIDPGSPSKVDPLRSHLVSISIAVAPGEAYYFPFAHTDAGSSHQGELLTD
                     TVVASSNVKNLPALMSDEMKPLRDLLEDESVPKTLQNAKYDMLVLRSEGVVLRGVEFD
                     TMIASYVLDPGRRSHSLDMLALEFLDHTMTSYVDVCGKGKSEITFDQVPLDVARDYSC
                     EDVDMTLRMREHFEPQLDAHELTPLFREVEMPLISVLAEMEWNGIAIDVQRFATLKER
                     FQRERERVQLEIYKEAGEEFNIGSNVQLREILFNRLKLPVLKKTSTGPSTDASVLQEL
                     AEEGHRLPSLLMEYRELAKLESTYLDTLPRSANPRDGRIHTSFNQTVASTGRLSSSDP
                     NLQNIPIRRELGRDIRRGFVPRAGWTLLAADYSQIELRLLAHLSRDNNFVDAFNAGGD
                     IHRQTAAIIFDVPLKSVTSEMRGRAKTINFATIYGQGPHALSRQLGITHAEARDFIAK
                     YFERFEGVKRYLDSMVEFAREHGYVQTIFNRRRYIPELRERNFNMRAFGERTAANSPI
                     QGSAADLIKIAMIRVDDSFRERGFESRMLLQVHDEL"
BASE COUNT          781 a         1028 c         1136 g          756 t
ORIGIN      
        1 atcggtgcgt gtgccgacgt tccgggaaac gtcccggacc gacgagagtg tgatatatcg
       61 cagggcgttc cgcctggttc ccggtaatta tgcgttgacc tacgctgtgc gtgacggaag
      121 cgggcagcgg agcgcgggac aacgtcagtc aatttctgtt ccaaaactgt cgtccccagc
      181 gctgtccacg ctcgagccga tatacgaggc aaagccacgg cgaactctgg attcgttacc
      241 gtcctatctc ccggcgccgc gcgcatccta tgtcttcggc gtcgacgatt cggtgggggt
      301 gtacctggag tcgtatggca cacctggtcc ggtatcgttc gaggttcgta cgccggacgg
      361 caaggtcgcg tggcagggca acagaaccct tccaacgcaa ggtgccggct tcgcgtcagg
      421 tgtagtgacc gttccgctcg tgcatgccga cgtcggtatc gggaccatcg tcgcaacgct
      481 acctggctcg cccgattcga tcggtacgcg aatattcgtc ggcttcggtc ccgatctccc
      541 ggtgttgtcg ttcaaggaca tgttggggta tctccgcttc ttcagtactc cgggtaaaac
      601 gaagccgcta tacgacgcga agccggaaga acgcggcgct cgatggaccg agtttctgcg
      661 tgcaaccgac ccgaatccat cgacgccgca gaacgaggca ctggatgagt atttcggacg
      721 gatacgcgat gccaacgcga ctttcatcac cgatacgcca cgcggatggc tatcggatcg
      781 cggcatggtg ttcgtgaccc tcggcgcgcc tacaaattcg tacgaagatt acggatcgat
      841 gtacatggga gacatcggcg tggtaaacca gatgtcgaca cgggtgcgga ttctggtctg
      901 ggagtacact cagtaccaga cacgaatcat attctatgat ccgaacgaca ctcgccagtg
      961 gcgcctgacg cgaccaagca tggcggtatt tcaatcactg ctcgcccgta cgaccaacag
     1021 ataaatggaa gtagagctac cacaatcgcc aaggctgttc ctggtcgacg gatatgcgct
     1081 gatctatcgt gcctttttcg cattgatatc gcgccctctc actacgagtc gcggtgagaa
     1141 cacttcggcg gcgtggggga tcgcgaactt tcttcaaaga ttgctgaatt cgcaccgccc
     1201 ggaatatctg ggatgggtgc atgattccgg attgtcgttc cgtcacgaac ggtatcctgc
     1261 ttacaaggcc acccgtgaga aactgaccga agaattgcag tcggatttcg atcgcggcat
     1321 ggagcgagtc agctcgcttc tcgatgcgta cggaattccg attctgtcgc tggaaggtta
     1381 cgaagcggat gatgtgatcg ggacgctggt gacgaaatcc gtgcacgccg gcgtcaacgt
     1441 cgttgtcata tcgggagaca aggattttca gcaactggta cgtccggggg tgtggctgtt
     1501 gaatcctggg cgcggtggtc ctgcgagtgt agaggaacac tgggtaggtg tggagaatgg
     1561 cgccgagcgg cttggcgtac cgccaagctt cgtcacggac tatctgtcac tcgtaggtga
     1621 ttcctcggac aacgtgccgg gagtgaaggg aatcggtgac aagacggcgt gcgagctggt
     1681 gggtacttat ggtcatctcg aggagattct cgcgcacgct tcggagatca ccaaaaagcg
     1741 gccgcgtgag gcgcttctcg aacacgccga gaatgcgcga ctgtcgaaag agctcgtaac
     1801 gatccgcgac gaccttccgg tcgatctcga tctcgatgca ttgaaggtgg gggcgccgga
     1861 caacgccgcc ctggcacagc tgtatgtcga gctggagttc catacattcg ccaaggaagc
     1921 cgccggcgct gtcgagacgc caaaggtcac cgaatcggcg aagtaccgta ctgtggaaac
     1981 ggtagccgag gtcgcgcgag tcgtacgcaa ggcgcgaaag gcacggacga ttgcggtcga
     2041 tacggaaacg acaatcgatc ccggctcgcc atcgaaggtc gatccactca ggtcacatct
     2101 cgtttccatc tccatcgcgg tggcgcccgg agaggcgtac tattttccgt tcgcgcatac
     2161 ggatgctggc agcagtcatc aaggcgaatt gctcactgac accgtcgtcg catcgtcgaa
     2221 cgtgaagaat cttccagcgc tcatgtcgga cgagatgaag ccgctcaggg atttgctgga
     2281 agacgagtcc gttccaaaga cgcttcagaa tgcgaagtac gacatgctcg tccttcgtag
     2341 cgagggcgtg gttcttcgtg gtgtcgagtt cgacacgatg atcgccagtt acgtactcga
     2401 tcccggtcgc cggtcgcact cgctggacat gctggcgctc gaattcctgg accacacgat
     2461 gacgtcgtac gtcgatgtgt gtggaaaggg aaaatccgaa atcaccttcg accaggtacc
     2521 actggacgtc gcgcgtgact actcgtgcga agatgtggac atgacgctgc gcatgcgcga
     2581 gcactttgag ccgcagctgg atgcgcacga gcttacgcct ctcttcagag aggtggagat
     2641 gcctctcata agcgttcttg ccgaaatgga gtggaacggc atagcgatcg acgtccagcg
     2701 cttcgcgaca ctcaaggagc ggttccagcg tgagcgtgag cgggtgcagc tggagatata
     2761 caaggaagct ggtgaggagt tcaacatcgg atccaacgtg cagctgcgcg agatcctgtt
     2821 caatcggctc aagctcccgg tgctgaagaa gacgtcgacc ggtccgtcga ccgacgcgag
     2881 cgtcctgcag gagctcgccg aggaagggca ccggctcccg tcgttgttga tggaataccg
     2941 cgagcttgcc aaactggaga gcacgtatct ggatacgctt ccgcgctcag cgaatccgcg
     3001 agacgggcga attcatacct cgttcaatca gactgttgcg agcactggca gactgtcatc
     3061 gagcgatccg aacctgcaga acataccgat ccgccgagag ctgggcaggg acattcgacg
     3121 cggtttcgtc ccgcgtgcgg gatggacgct tctggccgcg gattactccc agatcgagct
     3181 gcggctgctt gcgcacctgt cgcgtgataa caatttcgtc gacgcattca acgccggcgg
     3241 cgacattcac agacagaccg cggcgatcat attcgatgta ccgctcaagt cggttacgtc
     3301 cgaaatgcgc ggacgcgcga agaccatcaa cttcgcaacg atttatgggc aggggccgca
     3361 cgctctctcc agacagctcg gcatcactca cgccgaggca cgggatttca tagcgaagta
     3421 tttcgaacgg ttcgaaggcg tcaagcggta tcttgattcg atggtggagt tcgcgcgcga
     3481 gcatggatac gtacagacga tcttcaaccg gcgccggtac attccggagt tgcgtgaacg
     3541 gaacttcaac atgcgggcct tcggggagcg cacagcggcg aattcgccga tccagggctc
     3601 agctgctgat ctgatcaaga tcgccatgat ccgcgtggac gactcgttcc gcgagcgtgg
     3661 attcgagagc agaatgttgc tgcaggttca cgacgagctc g
//
LOCUS       DATIMD010000472         7510 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3367509, whole genome shotgun sequence.
ACCESSION   DATIMD010000472 DATIMD010000000
VERSION     DATIMD010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7510
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3367509"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..676
                     /locus_tag="VLI40_10450"
     CDS             <1..676
                     /locus_tag="VLI40_10450"
                     /inference="COORDINATES: protein motif:HMM:NF013478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HSU97641.1"
                     /translation="VKWRTSLLIVLTIVIQPIAYANMRVIPQITPSTAMGELLVGFGI
                     GLGAALLVGAAESAGDLLAIQIGLSGASLLDPLTKQTSPVLANFLSLFAITILLALNV
                     HLGMIEALAASLRAVPVGSALDLHAGLANLLALASTLFLAGLRFAAPVIATVMIGNAA
                     LAVLSRATPQLNILSVAFPLQIGLGLFALGIALPFIASTLGNWPTAYDQQLSSFFTAI
                     APGGMH"
     gene            679..1794
                     /locus_tag="VLI40_10455"
     CDS             679..1794
                     /locus_tag="VLI40_10455"
                     /inference="COORDINATES: protein motif:HMM:NF013479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscU/YscU/HrcU family type III secretion system
                     export apparatus switch protein"
                     /protein_id="HSU97642.1"
                     /translation="MSDDYGDKTEEATPKKRQEAQDEGRIPKSPELSVAVLLLGIALV
                     LTAIVPHVASRLFAIMGEGLASAGDTSFSAESAIKTLQALGWRTLSAIMLVASAMAGL
                     SLVINAVQARGVFSLKPITPQLKRISPASNVKRLVGMQAVVELVKSLFKLVIVGFAIH
                     AALGRDAINAIVVTTQQSPIALLQVVTHYSVKLIMTAGLAYLALALADYLWQYWQFSK
                     EMRMSKAEIKQEFKNSEGDPLLKQRMRSIGRAMARKQMLRDVPSADVVIVNPTHRAIA
                     LKYDPSKAPAPIVLAMGQRKVAERIKKLALENGIPIVENRPLAIALIKHARVGMVIPV
                     ELYLAVAEVLAFVIRQRHERGARWAYRPISHLVGDTV"
     gene            1818..3890
                     /gene="flhA"
                     /locus_tag="VLI40_10460"
     CDS             1818..3890
                     /gene="flhA"
                     /locus_tag="VLI40_10460"
                     /inference="COORDINATES: protein motif:HMM:TIGR01398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HSU97643.1"
                     /translation="MTTTAAPSKGGAEIGLAIAVVLVIGLLIIPLPGIMLDMLLVTSI
                     SLSLVVLLSALYTTNPLEFSSFPGLLLLLTLFRLALNVASTRLILTHGQAGHVIQAFG
                     EFVIGGNYAVGLVLFLILIGINFIVITKGAGRVAEVAARFTLDAMPGKQMAIDADLNA
                     GLIDETEARRRREEIARQADFYGAMDGSSKFVKGDAIAALIITFINIIGGIFIGVVQK
                     GLPFSQAVSTYTILTVGEGLVSQIPSLVVSTAAGIMVTHSAGSTQMGTVVASQMTRHP
                     RAMWIAAGVLAMFSIVPGLPMLPFLSLACILGMLARSASAAEKKRAASAVTALSAPKS
                     ESPTSTDPMRDLLQIDPIELEVGYALIPLVDERQGGDLLDRISMLRKQAAVELGILIP
                     PVRIRDDIRLPSNEYVIKLRGSEMARGEVMPRFLMALNTGSVISPIEGIDAVDPSFGM
                     PARWIATNRRADAEAYGYVVVEPSTVVATHLMEVLKANAAELLGRQDVQEMVETLKKT
                     HPALVDDIVPSKISLGTLHRVLQRLLRERIPIRDLVTILEALGDSADTTKDPEALTEH
                     VRRSLSNVIARLYAEPDASVRGITMGPRLEQALTGLFSPRTAQPGMTMLNPDALARML
                     RDLNEMSQAYSTEGRPIPLVTPPSLRVGVRRLIEPVLPSLPVISLAELPTAVNLHSVG
                     TWEMANAA"
     gene            3880..4434
                     /locus_tag="VLI40_10465"
     CDS             3880..4434
                     /locus_tag="VLI40_10465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97644.1"
                     /translation="MPHDLSAPRIIVASGMSGTGVSSVSTGLQDAAPGLNVIDAGSRW
                     TDITEACAPGFTRMIVVTTHDIISITSSYALIKLVRDHFTDAPLELLVNASEERDALK
                     TYERIQVACSHFLGETVGYAGSVPTDAREQEPGEKDATRPVRATLGAAAIVAIHNLAL
                     RLDEELEATVLRGSWRHGERRGVL"
     gene            4431..5195
                     /locus_tag="VLI40_10470"
     CDS             4431..5195
                     /locus_tag="VLI40_10470"
                     /inference="COORDINATES: protein motif:HMM:NF005413.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FliA/WhiG family RNA polymerase sigma factor"
                     /protein_id="HSU97645.1"
                     /translation="MTKMDMQLWKEFARGSQEARDSLLAEHLGLVHHVARQLSRTLAA
                     KADVDEMVSAGTMGLMSALSGFDPSRGLAFSTFAAPRIRGAILDELRRQDHVPRSVRR
                     KARELSGARETLQRIFGRPPEPQEMAEHLGVDVATLWRWEADVENAVHLSIDRQPGEP
                     DSGMAAPAEMLADETHGDIEETLNHEQEVSLLRDAIMELKEQERVVLSLYYFEELKLH
                     EIASVLNLTESRVSQIRSKALGKLRTELGPIRSFVA"
     gene            5400..6098
                     /locus_tag="VLI40_10475"
     CDS             5400..6098
                     /locus_tag="VLI40_10475"
                     /inference="COORDINATES: protein motif:HMM:TIGR03506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein"
                     /protein_id="HSU97646.1"
                     /translation="MSSAAAALRYWERRQEVASNNLANVSTDGFKGQKVFARMVEGAL
                     PAADAVTDFSQGTLQNTSNPRDISLDGSGFFVVKTANGERYSRGGSVQVNEAGELTDS
                     AGHQLLGENGPIRVAARGDDQIGNLQIAKDGTVSVGNAEVGRLRIETIPAKTTLLTEG
                     SGLFVPPATRTKIDPDARIVRQGTLEQSNVTPISEMVDMISIQRSFTSVQQAVTTLDT
                     VRQIATTELARPAN"
     gene            6111..6905
                     /gene="flgG"
                     /locus_tag="VLI40_10480"
     CDS             6111..6905
                     /gene="flgG"
                     /locus_tag="VLI40_10480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009426 - bacterial-type flagellum basal
                     body, distal rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HSU97647.1"
                     /translation="MDPALHTAATGMQAQQTRTDVIANNLANVNTTGFKRSRAHFEDL
                     LYQTLQGPATLGSRDTEQLPAIQVGLGTRLTAVQRIDSQGSLEQTSRPLDLAIQGEGY
                     FEVQMPNGNTAYTRDGSLQVSDQGVLVTGQGYAIQPPIRVPKEATSITISSTGVVTAN
                     GLTTAAGGTQELGRIELARFPNSSGLESMGQNLFSETTSSGEPIRGLPTENGNGSIAQ
                     GYLESSNVEIVTEMVDMITAQRAYEINSKAIKNSEDMAQTANSLMR"
     gene            6989..7363
                     /gene="flgA"
                     /locus_tag="VLI40_10485"
     CDS             6989..7363
                     /gene="flgA"
                     /locus_tag="VLI40_10485"
                     /inference="COORDINATES: protein motif:HMM:TIGR03170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HSU97648.1"
                     /translation="MNKVPVAARDLMRGTILSSTDIKWTDTTLTDGSTPSAAAAVAPG
                     WVARRVIRAGEILQEPGVAKPDLVNAGDAVDVIYSVPGVAIRMHGTAVGRGSKGDEVY
                     VRLDNRRRLRGIIAGPNTVRVM"
BASE COUNT         1534 a         2326 c         2255 g         1395 t
ORIGIN      
        1 ggtcaaatgg cgcacgtccc tcctgatcgt gctcacgatc gtgattcagc ccatcgcgta
       61 tgcaaacatg cgcgtgatac cacagatcac gccgtcaacc gcgatgggcg agctgctcgt
      121 tgggttcggt atcgggctcg gcgccgcgct gctggtcggc gcggctgaaa gtgccggcga
      181 tctgctcgca attcagatcg gcctttcggg cgcgtcactg ctcgatccgc tcaccaagca
      241 gacatcgccg gtactggcca acttcctctc gctctttgcg ataacgattc tcctcgcgct
      301 caacgttcac ctcggcatga tcgaggctct tgctgccagc ctgcgcgccg taccggttgg
      361 cagcgcgctg gatcttcacg caggactcgc aaaccttctc gcacttgcga gcacgctgtt
      421 tctcgcagga ctcagattcg cggcgccagt catcgccacc gtaatgatcg gtaacgcggc
      481 gctcgcggtg ctgagccgcg cgacaccgca actgaacatt ctttccgtcg cgttcccgct
      541 tcagatcgga ctcggcctgt tcgcgctcgg catcgcgctt ccgttcatcg ccagcacgct
      601 cggcaactgg ccgactgctt acgatcagca gctctcttcg ttcttcacgg cgatcgcgcc
      661 tggagggatg cactgagcat gtcagatgat tacggcgata aaacagaaga agcgaccccc
      721 aagaaacgcc aggaggcgca ggacgaagga cgcattccga agagccccga gctttcggtc
      781 gccgtccttc tgcttggtat cgcgctcgtg ctgaccgcga tcgtgccgca cgttgcaagc
      841 cgtctgttcg ccatcatggg cgagggcctc gcttcagcag gtgatacgtc gttctcggca
      901 gaaagcgcaa tcaagacatt gcaggcgctg ggatggcgca cactgtccgc gataatgctg
      961 gtcgcctcgg ccatggcggg actgtcgctc gtcatcaatg ccgttcaggc ccgaggcgtg
     1021 ttctcgctca agccgatcac gccacaactc aagcgcatca gcccggcatc gaacgtcaaa
     1081 cgtctcgttg gaatgcaggc ggtcgtcgag cttgtgaagt cgctgttcaa gctggtgatc
     1141 gttggcttcg cgatccacgc ggcactggga cgcgatgcga tcaacgcaat cgtcgtcacc
     1201 actcaacagt cgcctatcgc actgctgcag gtcgtcacgc actactcggt caagctgatc
     1261 atgaccgcgg gactggcgta cctggcgctc gcgctggcgg attacctctg gcagtactgg
     1321 cagttctcga aagagatgcg tatgagcaag gcggagatca agcaggagtt caagaactcc
     1381 gaaggtgatc cgctcctcaa gcagcgcatg cgctcgatcg gtcgcgcgat ggcacgcaag
     1441 cagatgctca gggatgtgcc gagcgctgac gtcgtgatcg tcaatccgac gcaccgcgcg
     1501 atcgcgctca aatacgatcc gtccaaggcg ccagctccaa tcgttctcgc gatgggccaa
     1561 cgcaaggtcg ctgaacgcat aaagaagctc gcactcgaga acggcattcc catcgtcgaa
     1621 aaccgtccgc tcgcaattgc gctgatcaag cacgcacgcg tcggcatggt gatccccgtc
     1681 gagctgtacc tcgcagtagc agaagtcctc gcattcgtga tccgccagcg gcatgaacgc
     1741 ggcgcacgct gggcgtatcg cccgatctcg cacctcgttg gagacacggt ctgatggcgg
     1801 caatcgcggc aaaaccggtg accacaaccg ctgccccaag caagggaggc gcggaaatcg
     1861 gactcgctat agcggtagtc ctcgtcatcg gcctgttgat cattccgctg ccgggcatca
     1921 tgctcgacat gctgctggtg acgagcatct cgctctcgct ggtagttctg ctctcggcgc
     1981 tgtacacgac caatccgctc gagttcagct cgttccccgg tctgctgctg cttctcacac
     2041 tcttcagact cgcgctgaat gtagccagca cacgattgat cctgacgcat ggccaggccg
     2101 gccacgtcat ccaggcattc ggcgagttcg tgatcggcgg caattacgcc gttggtctcg
     2161 tgctgttcct gattctcatt ggcatcaact tcatcgtcat cacaaagggc gctggacgcg
     2221 tcgcagaagt cgcggcacga ttcacactcg acgcgatgcc tggcaagcag atggcgatcg
     2281 acgccgatct gaatgcggga ctcatcgacg agaccgaagc acgcaggcgg cgcgaggaaa
     2341 tcgcgcgcca ggccgatttc tacggcgcga tggacgggtc gtccaagttc gtgaagggag
     2401 acgcgatcgc tgcgttgatc atcacgttca tcaacatcat cggcggaata ttcatcggtg
     2461 tagtgcagaa gggtcttccc ttctctcagg cggtaagcac atacaccatc ctgacggtcg
     2521 gtgaaggact cgtatcgcag ataccatcgc tcgtcgtatc gacggctgct ggtatcatgg
     2581 tcactcattc tgcgggctcc acgcagatgg gtaccgtcgt cgcatcgcag atgacgaggc
     2641 acccgcgcgc gatgtggatc gcggccggcg tgctcgcgat gttctcgata gtccccggcc
     2701 ttccgatgct gccattcctg tcgctggcgt gcatccttgg aatgctcgcg cgctcggcgt
     2761 cggcggcaga gaagaagcgt gcggctagcg ctgtcactgc gttgtccgcg ccgaaatccg
     2821 aatcgccgac gtcaaccgat ccaatgcggg acctgctcca gatcgatccg atcgagctcg
     2881 aggttggtta cgcgctcatc ccgctcgtgg acgagcgtca gggcggcgac ctgctcgatc
     2941 gtatctcgat gctgcgcaag caggccgccg tcgaacttgg aatactcatt ccgccggttc
     3001 gaatccgcga tgacattcgg ctgccatcga acgagtacgt gatcaagctt cgtggaagcg
     3061 agatggctcg cggcgaagtg atgccgcgct tcctcatggc gctcaatacc ggatcggtga
     3121 tctcgccgat cgagggaatc gacgcagtcg atccgagctt cggcatgccc gcacggtgga
     3181 ttgcaaccaa tcgtcgcgcg gacgcggaag cctatggcta cgtggtcgtc gagccttcca
     3241 ccgtcgttgc cacgcatctc atggaagtcc tcaaagcgaa cgcagccgag ctgctcggcc
     3301 gccaggacgt tcaggaaatg gtcgagacgc tcaagaagac gcatccggca ctggtcgacg
     3361 acatcgttcc atcgaagatc tcgctcggta cactgcatcg cgtactccag cgtcttctcc
     3421 gcgagcgcat cccgatccgc gatctcgtca ccatcctcga agcgctcggc gactccgccg
     3481 atacgaccaa ggatccggaa gcactcacgg agcatgtgcg ccgctcgctg tcgaacgtca
     3541 tcgcgcggct gtatgccgag ccggatgcgt cggtgcgcgg aatcacgatg ggaccgcgcc
     3601 tggagcaggc tctcacgggc ctcttctcac cgcgcaccgc gcaaccgggg atgacgatgc
     3661 tcaatcccga tgcgctcgcg agaatgctcc gcgatctcaa cgagatgtcg caggcttatt
     3721 cgacagaagg gcgcccgata ccgctcgtca cgccgccaag tctgcgtgtt ggcgtgcggc
     3781 gcctcataga gccagtactg ccatcgttgc cggtcatctc gctcgccgag cttccgacag
     3841 cggtgaatct gcacagcgta ggcacatggg agatggcgaa tgccgcatga tctgagcgct
     3901 ccgcgcatca tcgtggcgtc cggcatgtcg ggaaccggtg tgtcgtcggt cagcaccggt
     3961 ctgcaggatg ccgcaccggg actgaacgtc atcgatgcag gatcgcggtg gacggacatc
     4021 accgaagcat gcgcgcctgg attcacgcgc atgatcgtag tgactacgca cgacatcatc
     4081 tcgatcacct cgtcatacgc gttgatcaag ctggtacgcg accatttcac ggatgcaccg
     4141 ctcgagttgc tcgtcaacgc gagcgaggag cgcgacgcgc tcaagacgta cgagaggata
     4201 caggtggcgt gcagtcactt cctcggcgag acagtcggct atgcgggatc ggtgccgacc
     4261 gacgcgcgtg aacaagaacc tggtgagaag gatgcgacga gacctgtgcg tgccacactt
     4321 ggcgcggcag cgatcgtggc gatccacaat ctcgcattgc gattggacga agaacttgag
     4381 gcgacagtgc tacgaggctc gtggcgtcac ggtgagcgga gaggagtctt atgacaaaaa
     4441 tggatatgca gctctggaag gaattcgcgc gcggcagtca ggaggcgcgt gatagcctcc
     4501 tcgccgagca tctcggcctg gtccaccatg tcgcacgtca gttgtcgcgt acgctcgcgg
     4561 cgaaggctga cgtcgatgag atggtgagcg caggcacaat ggggctgatg agcgcactgt
     4621 cgggtttcga tccgtcgcgc ggactcgcct tcagcacgtt cgccgctcca cggattcgcg
     4681 gtgcaattct ggacgagctg cgccgacagg atcacgtccc ccgctccgtt cgccggaagg
     4741 cgcgcgagct gtcaggggcc cgggagacgt tgcagcgaat cttcggacgt ccacccgagc
     4801 cacaggagat ggccgagcat ctgggcgtcg acgtcgcaac gctctggcgt tgggaagcgg
     4861 acgtcgagaa tgccgtgcac ctctcgatcg accgtcagcc cggcgagccc gattccggaa
     4921 tggccgcgcc cgcagagatg ctggccgacg aaacgcacgg cgacatcgag gagacgctca
     4981 atcatgagca ggaggtctcg cttctcagag acgccatcat ggagctcaag gagcaggagc
     5041 gcgtagtgct gtcgctgtac tacttcgagg agctcaagct tcacgaaatc gcgtcggtgc
     5101 tcaatctcac cgagagccgc gttagccaga tccgctccaa ggcactggga aaattgcgca
     5161 cggagctggg cccgattcgc agcttcgtcg cctgatttgt agcggcaata attgcctagc
     5221 ggcagtaatt accctgcata tcgctaagtc atgagtgaga ctgtcactgt ctaagtcttt
     5281 aactatcaat cagttacact gtttttccac atgatgctga aagtggtatc cgtgttgcca
     5341 atacggacca tgtcaaactg gagatccgaa caatgggtgc aagtgtccga ccgaatggaa
     5401 tgtccagcgc agccgccgcg ctgcgctact gggagcgcag gcaggaggtc gcgtcgaaca
     5461 acctcgcgaa cgtctcgact gatggcttca agggccagaa ggtatttgcg cgcatggtcg
     5521 aaggcgcgct cccagccgcc gacgccgtga cggatttctc ccagggaaca ctgcagaaca
     5581 ccagcaatcc tcgagacata tcactcgacg gttccggctt tttcgtcgtc aagactgcga
     5641 acggcgagcg atacagccgc ggtggcagtg tccaggtcaa cgaagccgga gagctcactg
     5701 attccgccgg ccaccagctg ctcggcgaaa atggcccgat ccgcgtcgcc gcacgtggcg
     5761 acgaccagat cggaaatctc cagatcgcaa aggatgggac tgtatcggtg ggtaacgctg
     5821 aggtaggccg cctgcgcatc gaaacgattc cggccaaaac aacacttctc accgaaggca
     5881 gtgggctgtt cgtcccacct gccacgcgca cgaaaataga tccggacgcg cgaatcgtcc
     5941 ggcagggtac tctcgagcaa agcaacgtca cgccgatcag cgagatggtg gacatgatct
     6001 cgattcagcg ctcattcacg tcagtgcagc aggcggtgac cacgctcgac accgttcgcc
     6061 agatcgcgac cacagagctg gcccgccccg caaactaagg agattgagac atggatcccg
     6121 cacttcacac agcagcaaca ggcatgcagg cgcagcagac gcgcaccgac gtcatcgcca
     6181 acaatcttgc caacgtcaat acaaccggct tcaagagaag ccgagcacat ttcgaagacc
     6241 tgctgtacca gacgttgcag ggtccggcaa cgctcgggtc acgcgacacc gagcagcttc
     6301 ccgccatcca ggttggattg ggcacgcgtc tcaccgcggt gcagcgcatc gattcgcagg
     6361 gctcactcga gcaaacttct cgtccgctcg atctcgccat tcagggcgag ggctacttcg
     6421 aagtgcagat gccgaatggc aatacagcct acacgcgtga cggaagcctc caggtttcgg
     6481 atcagggtgt cctggtgacg ggccagggtt acgctattca gccgccgatc agagttccca
     6541 aggaagcgac gtcgatcacg atctcctcga ccggcgtcgt cacagccaac ggattgacca
     6601 cagctgcagg tggaacgcag gagctcggcc gcatagagct tgcgcgcttc cccaattcgt
     6661 cgggtctgga atcgatgggc cagaatctgt tctccgagac cacctcatcc ggcgagccga
     6721 tcagaggcct gccgaccgag aacggtaacg gcagcatagc acagggatat ctcgagtcca
     6781 gcaacgtgga gatagtcacc gagatggtcg acatgatcac tgctcagcgc gcctacgaga
     6841 tcaactccaa ggcgatcaag aacagcgaag acatggcgca gactgccaac tcgttgatgc
     6901 gataaagatg aagaaacaca acgccgcttt tctggctgga cttatgtgct gcgtgcacag
     6961 cgcacgcgcg caatccgtca gtcgcggcat gaacaaggtt cctgtcgcgg cgcgcgatct
     7021 catgcgcgga acgatcctgt cctccaccga catcaagtgg acggatacga cgttgaccga
     7081 tgggagcacg ccgagcgcgg cagcagctgt cgcacccggc tgggtcgcgc gcagagtgat
     7141 tcgcgccggc gagattcttc aggaacctgg cgttgccaag cccgatctcg tcaacgccgg
     7201 cgacgcggtc gatgtgatct actccgtacc gggcgtcgca atccggatgc acggaacagc
     7261 ggtaggtcgc ggcagcaagg gcgacgaagt gtatgtgcga ctcgacaata gacggcgcct
     7321 gcgcggtatc atcgcgggac cgaacaccgt gagggtgatg taatgagcga tgcaacgaaa
     7381 attcgattca cccgcgcact ggccgcgatc gcatccgctg catttgcatc cgcgatattt
     7441 gcatccgcaa caatcgcagg cgcatccgcg gcaggagcgc aagcgggagc gccggcgccg
     7501 agcaccgcgg
//
LOCUS       DATIMD010000473         7020 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5106527, whole genome shotgun sequence.
ACCESSION   DATIMD010000473 DATIMD010000000
VERSION     DATIMD010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7020
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5106527"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VLI40_10490"
     CDS             <1..207
                     /locus_tag="VLI40_10490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97649.1"
                     /translation="IQLEWVINQYFEIDHYQPLLFIVESFEHLFEQVGVLEDWMKQGK
                     LDNVSPGEPSLSDVDVRSFIDAST"
     gene            223..2121
                     /gene="nagB"
                     /locus_tag="VLI40_10495"
     CDS             223..2121
                     /gene="nagB"
                     /locus_tag="VLI40_10495"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004342 - glucosamine-6-phosphate
                     deaminase activity [Evidence IEA];
                     GO_process: GO:0006046 - N-acetylglucosamine catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HSU97650.1"
                     /translation="MSSPRERIRVVVAEDDEIARLIAGRMRDIIRARQKSGEHAVLGL
                     ATGSTPIGIYRELIRMHRDEGLDFSDVVTFNLDEYYGVAPDDIHSYHRYMWENLFSHI
                     NIPRGNVHIPRGDVPRDEIDAECARYEQAIRDAGGIDLQLLGIGKTGHIGFNEPGSGA
                     DSRTRIVTLDTITRRDAAADFFGEENVPTEAVTMGVATILAAREIALVATGEHKAAIV
                     RRAAEGEPSPDVAATYLQEHPDATFYVDPAAAADLTRIATPWLVSEVQWTRDRAIDAV
                     IWLSRLTKKSVLKLDTHDYRENHLSSLVARYGSAGPLNGEVFNALVAKVRGRSKLPHG
                     RRIIVFSPHPDDDVISMGGMLHKLHQNDNEILVAYQTSGNIAVFDHEVRRYLDFVGRM
                     DREFKLDDAPMRRLVKSAEESLATKKQGQVDSDEVQAIKRSIREAEAVSAIESFGMKR
                     EQARFLNLPFYQTGRVHKAPVGPEDVRITLDLLESHRPELIFVAGDLSDPHGTHRMCL
                     EVVERALAEYSGAAPELWYYRGAWQEWTVAAADVLVPLSEEELREKILAIFKHQSQKD
                     RAPFPGQDEREFWQRVEDRNRSTAALIDGLGLPEYYAMEAYVVRKDGKPIEARAVPTS
                     ALGDAPGR"
     gene            complement(2336..3724)
                     /locus_tag="VLI40_10500"
     CDS             complement(2336..3724)
                     /locus_tag="VLI40_10500"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSU97651.1"
                     /translation="MTNTSRRIRTASVAALVTTILIGSAACNDYLKVTNPSAVDVSKL
                     ADSADANLLVNGAIGEFQTMIANTALYGGILTDESNSAHANVSYNLLDQRNLTDNLDL
                     VSLTYSPIQRARFDGDTVANRLIGYDGSTAATDVRIARTLTFAAYSTLILGETFCAAP
                     VQGGAAMTPAQLFAAAQPKFDSALVIARAASAANINKVVADSIVNLALVGAARTALDL
                     GDRARAISYASQVTPDFVYRVYFAEGIPPSPALPVNPYWNGMGSPQASTAANGTSVSG
                     GFSYASSALWIMVDSTFQNLNDPRVPTTPTQVKAMSASYFGYVANQPKSFGGYTAPSV
                     AHPGGQAMTPGASIRIASYLEAQYIIAEANAGNATTLAFVNAQRAANGQPASVATSPT
                     AVMADLRDQRRREFYLDGHRLGDLRRYIALYSVDQFPTGIVPHSAGTPYGTAVCFPIP
                     ISELNSNPNAAG"
     gene            complement(3736..6816)
                     /locus_tag="VLI40_10505"
     CDS             complement(3736..6816)
                     /locus_tag="VLI40_10505"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSU97652.1"
                     /translation="MRFASPLVVSLPRALASVVAALCCVVAGAGAQGATGATGTIKGT
                     VLESPTQRPLSDAQVVVQGTQRRAATGAEGTFTITGVTPGAVTLFARRVGYTAQTQSV
                     TVVAGQTATVVFHMRQAALSLDQVVVTGTANATQRRTVGNAITQLDVGAITQHSTMTN
                     VTDVLQSKTPGLTLVPGSGSPGTAADLRIRGTSSISASNRPIFYVDGVRYNDLSIGNY
                     GPSGTGASGNTFSQGASALDAINPDDIESIEVIKGPAAATLYGADAAGGVIQIITKKG
                     SRSQKASWTLKGEKGSTDWALATPINYTTCTAARIAAKDADGQFSWPGCQGVAVGTVL
                     TDDPMRRDPNALRTGDYQHIAASVRGGTNQYNYYVSGDQSIDQGVFFNSWENRKSGRG
                     NFGYTLSDKLDFSLTSTYLQSRLSLPLSDDAAGGLIISAVRGKPGQRPNQAPGYAIDA
                     PAVTNQYDNKTNSERSIFGFTTNYKPFSWMRNRLTVGMDNDNGLATVYFPPGGQLSQS
                     DYPQGYLAQAVPVTHLYTFDYAGTITTPLTSSLTSEFSVGAQGTKREYRRTEATGSGF
                     PSPEFTLIGAATTLSGSSSFSEQASLGYFVQDQLGWNNRLFVTGAVRADDNSAFGTSF
                     NKVYYPKASLSYVASEEPALHSLFRALHADNFKFRFAYGQAGRAPGPYDALRTYTSSK
                     VIIGGTAQPGLIPGATGNPDLHAERGIETEAGFDASFLSGRLGIEFTGYNKKTTDALI
                     SIPNAPSLGFTSSKFINFGAIQNTGTELGITLRPIDRSWLTWDAHVNYSTNANKVTRL
                     AYQGLKEIDVYDPYLTVAQTQRIIEGSPIAGWWAQDAKRDASGNFVTDAKGNLIIDSL
                     RYVGPVTPKYQGSVSNTFTIAKYFQLYGLIDFEGGFFLLNQRDRNRAQGSNRNSKQFN
                     DGSLTALDSVYYNTAAITAPWIQPGDFVKLRDVSLSYTLPSSFVNAMHVGGAMLTVAG
                     HNLGFLSKRYPGVDPEVNFIGQGTFLGGTTQFLRVDSYTVPMLRRWTTSLTLNF"
BASE COUNT         1340 a         2070 c         2242 g         1368 t
ORIGIN      
        1 atccagctgg agtgggtgat caaccagtac ttcgagatcg atcactacca gccattattg
       61 ttcatagtcg agtcgttcga acacttgttc gaacaagtgg gagtactgga agactggatg
      121 aagcagggca agctggacaa cgtctcgccg ggcgagccga gtctgtcgga cgtcgacgtc
      181 cgcagcttca tcgacgcgtc gacttaaggg cgggcagagc tattgtcttc accgcgggag
      241 cggatacggg tagtcgtcgc cgaagacgat gagattgcgc gactgatcgc tggaagaatg
      301 cgcgacataa ttcgcgcgcg acagaaatcg ggggagcatg cggtgctcgg gcttgcgacc
      361 gggagcacgc cgatcggcat ctatcgcgag ctgatccgca tgcatcgcga cgaaggactg
      421 gatttctccg acgtcgtcac gttcaatctc gacgagtatt acggcgtcgc accggacgac
      481 atccacagct accatcgcta catgtgggag aatctttttt ctcacatcaa cattccgcgc
      541 gggaacgtgc acattccgcg cggcgacgtg ccgcgtgacg agatagatgc ggagtgcgcg
      601 cgctacgagc aggcgatccg cgacgccggc ggaatcgacc tgcagctcct cggtatcgga
      661 aagacaggcc acatcggctt caacgagccc ggttcgggcg ccgattcccg cacgcgcatc
      721 gtcacgctcg acacaatcac tcgtcgcgac gcggccgcgg acttcttcgg cgaggagaac
      781 gttcccaccg aagcggtgac gatgggcgtc gcgacgattc ttgccgcgcg cgagatcgcg
      841 ctcgtcgcaa cgggtgagca caaggctgca atcgttcggc gcgcagccga gggcgagccg
      901 agcccggacg tcgctgcgac gtatctgcag gaacatcccg atgcgacgtt ctacgtcgat
      961 ccggctgccg ccgcggatct cacacgcatc gcgacgccct ggctggtgag cgaggtacag
     1021 tggacgcgcg accgcgcaat cgacgcggtg atctggttga gccggcttac gaagaagtcc
     1081 gtcctcaagc tcgacacgca cgattatcgc gagaatcatc tgagctcgct cgttgcgcgc
     1141 tacggctctg cggggccgct caacggcgag gtattcaacg ctctggtggc gaaggtgcgc
     1201 ggccgcagca agttgccgca cggacgccgc atcatcgtgt tctcaccgca tcccgacgac
     1261 gacgtgatct cgatgggcgg catgttgcac aagctgcacc agaacgacaa cgagattctt
     1321 gttgcgtatc agacgtccgg caacatcgcg gttttcgatc acgaggtgcg cagatatctg
     1381 gacttcgtcg gtcgcatgga tcgtgagttc aagctcgacg acgcaccaat gcgaagactg
     1441 gtgaagtcgg ccgaggaatc gcttgccacc aagaagcagg ggcaggtcga ttcggatgaa
     1501 gtgcaggcga tcaagcggtc gatacgcgaa gccgaggcgg tctcggcgat cgagagcttc
     1561 gggatgaagc gtgagcaggc acgctttctc aatctgccgt tctatcagac cggcagagtg
     1621 cacaaggcgc ctgtcggccc cgaggacgtg cgcatcacgc tcgatctgct cgagtcgcat
     1681 cggccggagc tgatctttgt agcaggtgat ctgtcggatc cgcacggcac acaccgaatg
     1741 tgccttgaag tggtcgagcg tgcgctggct gagtattccg gcgcggcgcc ggagctgtgg
     1801 tattaccgcg gtgcgtggca ggagtggacc gtggcggcag ccgacgtgct cgtcccactg
     1861 tcggaagagg agctacggga gaagattctg gcgatcttca agcaccagag ccagaaggac
     1921 cgcgctccct tccctggcca ggatgagcgc gaattctggc aacgcgtcga ggatcgcaat
     1981 cgcagcaccg ctgcgttgat cgacgggctc ggattaccgg agtactacgc gatggaagcg
     2041 tacgtggtcc gcaaggacgg caagccgatc gaagcgcgcg ccgtcccaac gagcgcgctg
     2101 ggtgacgcac cggggcgctg aaacgactcc gtcattcccg cgaacgcggg aacctgattc
     2161 cgtcattccc gcgaaagcgg gaatccatct gctgccgacc aggttcctgt cgtcatcgcg
     2221 ctcagagatc gataacatgg attcccgcgt tcgcgggaat gacgacgata acatggattc
     2281 ccgcgttcgc gggaatgacg gaccttctgc gacgtgacga tccgtcgaac cgccgttacc
     2341 ccgccgcgtt cgggtttgag ttaagctccg aaatcggaat cgggaagcac actgccgtcc
     2401 cgtacggcgt gcctgcagag tgcggcacaa tccccgtcgg gaactggtcc acactgtaca
     2461 gtgcgatgta acgcctcaga tcaccgagtc gatgcccgtc gaggtagaac tcgcggcgac
     2521 gctggtcgcg cagatccgcc attacagccg tcggcgacgt cgcgaccgac gcaggctgac
     2581 cgttcgccgc ccgctgtgca ttcacaaacg cgagcgtcgt tgcattgccg gcattcgcct
     2641 cggcgatgat gtactgcgct tcgagatagg atgcgatacg gatgcttgct ccgggcgtca
     2701 tcgcctgacc acccgggtgc gcaacgcttg gcgccgtgta tccgccgaac gactttggct
     2761 ggttggcaac gtagccgaag tagctcgcgc tcattgcctt gacctgtgtc ggcgttgttg
     2821 gcacacgcgg atcgttgagg ttctggaagg tgctgtcgac catgatccac agtgcggaac
     2881 tggcgtacga aaatccgccg ctgacgctcg taccgttcgc cgcagtgctt gcctgcggag
     2941 atcccatgcc attccagtat gggttcaccg gcagcgccgg tgacggcggg attccctcgg
     3001 cgaagtacac acggtacacg aagtccggcg tgacctggga cgcgtacgag atcgcccttg
     3061 ccctgtcgcc taggtcgagc gcggtgcgcg cagcgcctac gagcgcgagg tttactatcg
     3121 agtcggcgac caccttgttg atattcgcag ctgatgccgc gcgcgcgatg acgagcgccg
     3181 agtcgaactt gggttgcgct gccgcgaaca gctgcgccgg cgtcatcgcc gcgccaccct
     3241 gtacaggcgc ggcgcagaac gtctcaccga ggatgagcgt gctgtacgca gcgaaggtca
     3301 gtgtccgtgc aatacggacg tcggtcgctg ccgtcgaacc gtcgtagccg atcaatctgt
     3361 tcgcaacggt atctccgtca aaacgcgcac gctgaatcgg gctgtaggtc aacgacacga
     3421 ggtcgagatt gtcggtgaga ttgcgctgat ccagcagatt gtacgacacg ttcgcgtgcg
     3481 cgctgttgga ctcgtccgtg aggattccgc catagagcgc cgtgttcgcg atcatcgtct
     3541 ggaactcgcc gatcgcaccg ttgacgagca agttggcatc agcgctgtcg gcgagcttgc
     3601 tgacatcgac agcgcttgga ttggtgacct tcaggtagtc attgcaggcg gcgctgccga
     3661 tcaggatcgt cgtgacgagg gcggccacgc tcgccgtgcg gattctgcga gaggtgtttg
     3721 tcattgtgcg atcgcctaga agttcagggt gagcgacgta gtccatcgcc gcagcatcgg
     3781 aactgtgtat gaatcgactc gcaggaactg agtggttcca ccgaggaacg ttccctggcc
     3841 gatgaagttg acttcgggat ctactcccgg ataccgtttg gagaggaagc cgaggttgtg
     3901 ccctgcgact gtcagcatcg caccgccgac gtgcatcgcg ttgacgaacg acgatggcag
     3961 tgtgtagctg agcgatacgt cgcgcaactt cacgaagtca cccggttgaa tccacggtgc
     4021 ggtgatcgcc gcggtgttgt agtagacgga gtcgagcgcg gtgagcgagc cgtcgttgaa
     4081 ttgcttggaa ttgcgattcg aaccctgggc acggttgcgg tctcgctgat tcaacaggaa
     4141 gaaccctcct tcgaagtcga tcagtccgta cagctgaaag tatttcgcaa tcgtgaacgt
     4201 gttcgagacg cttccctgat acttcggcgt taccggaccg acgtagcgca ggctatcgat
     4261 gatgagattc cccttggcgt cggtgacgaa gttgcccgac gcatcacgct tggcgtcctg
     4321 cgcccaccag ccggcgatcg gcgagccttc gatgattcgc tgcgtctgcg cgaccgtaag
     4381 gtacggatcg tagacgtcga tctccttgag tccctggtac gccagtcgcg taaccttgtt
     4441 cgcgttggtg gagtagttga cgtgcgcgtc ccacgtcagc caggaccggt cgatcggccg
     4501 cagtgtgatg ccgagctccg tgccggtatt ctgaattgcg ccgaagttga tgaacttgga
     4561 cgacgtgaat ccgagcgacg gtgcgttggg aatcgagatc agcgcgtcgg tggtcttctt
     4621 gttgtaaccg gtaaactcga taccgagacg gccggagagg aacgacgcat cgaatccggc
     4681 ttcggtctcg atgccccgct cggcgtgcag atccggattg ccggtcgcgc cgggaatcag
     4741 acccggctgc gccgtaccac cgatgatgac cttgcttgat gtgtacgtcc tgagcgcgtc
     4801 gtacggtccc ggcgcgcgtc ctgcctgtcc gtacgcgaac cggaacttga agttgtcggc
     4861 gtgcagcgct cgaaacagcg aatgcaacgc cggctcctcc gacgctacat acgagagaga
     4921 tgccttcggg tagtacacct tgttgaagct cgtaccgaac gcggagttgt cgtccgcgcg
     4981 caccgcgccc gtaacgaaca gcctgttatt ccagccgagc tgatcctgaa cgaagtagcc
     5041 aaggcttgcc tgctcgctga aggagctcga cccggacagc gttgtagcgg cgccgatgag
     5101 agtgaactcc ggacttggga aaccgctgcc agtggcttcc gtgcggcgat actcgcgctt
     5161 ggtaccctgc gcaccgacag agaattcgga ggtgaggctg ctcgtgagcg gagtggttat
     5221 cgtgccggca taatcgaacg tgtagagatg cgtgaccgga accgcctgag cgagatagcc
     5281 ctgcggataa tcgctctgcg aaagctggcc acccggcggg aagtagaccg ttgcgagacc
     5341 gttgtcgttg tccatgccga cggtgagcct gttgcgcatc cagctgaacg gcttgtagtt
     5401 ggtcgtgaaa ccgaagatcg accgctcgga attggtcttg ttgtcgtact gattggtcac
     5461 cgcaggcgcg tcgattgcgt agccgggcgc ctgattgggg cgctggcccg gctttccgcg
     5521 cacggcgctg attatgagac cgccagccgc gtcgtcgctc aacggcaatg acagccgcga
     5581 ttgcaggtag gtgctcgtca ggctgaaatc gagcttgtcc gagagcgtgt aaccgaagtt
     5641 tccgcggccg gacttgcgat tttcccaact gttgaagaag acgccctgat cgatggactg
     5701 atcgcctgat acgtagtagt tgtactggtt cgtcccgcca cgaaccgacg ctgcgatgtg
     5761 ttgatagtcg cccgtgcgga gcgcgttggg gtcgcgccgc atcggatcat cggtgagaac
     5821 cgtgccgacg gcgacgccct gacatccggg ccatgagaac tggccgtcgg cgtcctttgc
     5881 ggcaatgcgc gcagccgtgc aggtggtgta attgatcggc gtcgcgagcg cccagtccgt
     5941 cgagcccttc tctcccttca gagtccagct cgccttctgg ctccggctgc ccttcttggt
     6001 gatgatctgt atcacgccac cggcggcatc ggcaccatac agcgtcgccg ctgcgggtcc
     6061 cttgatgact tcgatgcttt ctatgtcatc ggggttgatc gcatcgagcg cagatgcgcc
     6121 ctgtgaaaag gtgttgcccg acgcgcccgt accggacggt ccgtagttgc cgatcgacaa
     6181 gtcattgtag cgcacgccgt cgacgtagaa gatcggccga ttgctcgcgc ttatcgaact
     6241 ggtgccgcga atgcgaagat cggcggctgt tcctggcgaa ccggaacccg gcaccagcgt
     6301 gagtcccggc gtcttggatt gcagcacgtc ggtgacgttg gtcatcgtac tgtgctgcgt
     6361 gatggcgccg acatccagct gtgtgatcgc gttgcccacc gtgcggcgct gagtcgcgtt
     6421 ggcggttccc gtgacgacca cctgatcgag cgacagcgcc gcctgccgca tgtgaaagac
     6481 gacagtcgcg gtctgacccg cgacaacagt gacgctttgc gtctgtgcag tatagccgac
     6541 gcgccgcgcg aacaacgtaa cggcgccggg tgtcacgccg gtgatcgtga acgtcccttc
     6601 ggcgccggtc gcggctctgc gttgcgttcc ctggacaacc acctgcgcat ccgaaagcgg
     6661 acgctgtgtg ggcgactcca gaaccgttcc cttgatggta cccgtggcgc cggtggcgcc
     6721 ctgcgcgccg gcaccagcaa cgacacaaca cagtgccgcg acaacgctcg cgagcgccct
     6781 cggcaacgac acaactagcg gcgaagcgaa tctcatggga taatttctca ggccaaatga
     6841 tcgcgttgaa ggtgcgcacg atgcagcacc gtgatttcac acggctaagc ggcaaatgta
     6901 tagaaatgcg cggtgaacgg tagcggcgat agcgcgaata gcacgaacgg agtcgcacaa
     6961 ggacgtggaa tgtacgctca caaactattc tttaattagt gaaaccatga accgagtcag
//
LOCUS       DATIMD010000474         3648 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1930140, whole genome shotgun sequence.
ACCESSION   DATIMD010000474 DATIMD010000000
VERSION     DATIMD010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3648
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1930140"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..541)
                     /locus_tag="VLI40_10510"
     CDS             complement(<1..541)
                     /locus_tag="VLI40_10510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97653.1"
                     /translation="MMSPLRSLLITAGLAAISVAPVTAQTAATAQNPLLTPSTLPFEA
                     PPFDRIKDSDFQPAIDEGMRQDLADIAKIADQSAPPTFDNTIVALERSGQLLARVQRV
                     FGGLTQSNTNPTLQRVRREEAPRLAAHSDAINLNPGLFARVRTIYEHRKTSGLDAEQQ
                     YLVERYYIRFVRAGANLSEA"
     gene            complement(673..1134)
                     /locus_tag="VLI40_10515"
     CDS             complement(673..1134)
                     /locus_tag="VLI40_10515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97654.1"
                     /translation="MKTKRSAWLSGLTLAAVTGVAACNAPAKPSSDLSRDLDAASSTS
                     SSLTLAPTSGSRDVVSAVERAPDAQPAPAPVQKQVAQHRTPPPARLQPVAAAPQPVTP
                     TQAVVAAPPAVTPAPATVEATRRPTPVQQAPRGGYKTEAEVFRDAPFPIQP"
     gene            1361..1864
                     /locus_tag="VLI40_10520"
     CDS             1361..1864
                     /locus_tag="VLI40_10520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97655.1"
                     /translation="MDTFLGRALTDAATGLPNIPYFRIIQNWEERRARRRNTMVRVIR
                     VAVEGGTDISRRALLWRLCQELRTSDLIASEGRDTFHILLTTPDAENAVSIAERVQHL
                     GDMPGESGEKGEVDGASPLVLRTEIEPPTQYVAEKGPCDPCEEHELIKPPPRDEIDDE
                     PEFKNRP"
     gene            1967..>3648
                     /locus_tag="VLI40_10525"
     CDS             1967..>3648
                     /locus_tag="VLI40_10525"
                     /inference="COORDINATES: protein motif:HMM:NF042769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSU97656.1"
                     /translation="MTDEPGLRAPIHHRRAHLTQGRTMAIAGRCSVALIALSLFSGSD
                     ALAQSARSKPSKPTPTRPASTAASAAASAKRAEEFVLKSGNDTIAVETMQQNGNDITA
                     AMDARGSSRYTLDLKVDSQSLVSRLEIKAYGEASTTPTAHAIVAIVGDSVFAQVGTGI
                     QRAATKVGAIPWVNPSFALLQVLVQRAHRLGTAPATIPLFLIEGGSTVSATVTRVGAD
                     STVVEVGGAELRLHTSPSGEVLGGAVPAQRTEIVRRTIPYAATGVALAKPDYSAPANA
                     PYTSEDVRVNTPGSYVLAGTLTMPRNRNARVPAVVMITGSGLEDRDETVPGVNGYRPF
                     RQIADTLSRRGIAVLRMDDRSFGESGGDATSATTADFANDIRAALAYLKSRPDIDDRH
                     LFLIGHSEGGEIAPMIAATDPSLAGIVTLAGPAATGREISHAQLAYAVSRDSALSAAR
                     RDSILNGQDAILDSAAAHQPWVKYYLSYDPIATAKSVRVPALVLQGGNDRQISPDQAE
                     KLAAALRAGGDKDVTVHVFPELDHLFLVDPTGDPSSYPRLPSKTIGADVLGT"
BASE COUNT          694 a         1094 c         1180 g          680 t
ORIGIN      
        1 ccgcttccga cagatttgcg cccgcgcgta cgaaccttat gtagtaccgt tcgacgagat
       61 attgctgctc ggcgtcgaga ccgctggtct tgcggtgttc gtagatcgtc ctgacgcgtg
      121 cgaagagtcc gggattgaga ttgatcgcat cgctgtgcgc cgcgagcctg ggcgcttcct
      181 cgcgccgcac gcgttgcagc gtcgggtttg tgttggattg cgtgaggcct ccgaacaccc
      241 gctgcacacg agcgagcagc tggccggatc gctcgagagc aacgatggta ttgtcgaacg
      301 tcggtggcgc gctctgatcg gcgatcttcg caatgtccgc gagatcctgc cgcatccctt
      361 catcgatcgc aggctgaaaa tcggagtcct ttatcctgtc gaacggcggc gcctcgaatg
      421 gaagagtgct cggcgtgaga agcggatttt gtgctgttgc cgcagtctgc gcggtgaccg
      481 gtgcaacaga tatcgccgcg agaccagcgg tgatcaaaag cgaacgaagg ggggacatca
      541 tgctctctcc ttggagtgac gccaggggca cttcaaagca tatcgcggag agaacactat
      601 tgcgagacgt gcagcggtga gcggcggatt gtcacgctca ccgagtgttg gcgatccttg
      661 tgttggcgat ccttacggct ggatcgggaa cggtgcgtcg cgaaagactt cggcttcggt
      721 cttgtagccg ccccgcggag cctgctgtac cggagtcggc cgacgagtgg cctcgaccgt
      781 tgccggtgct ggcgtcactg cgggcggcgc ggccacgacc gcttgcgttg gcgtcacggg
      841 ctgcggcgcg gctgcgactg gctggagcct ggccggcggt ggcgttctat gctgggctac
      901 ctgcttctgt acaggagcgg gtgcgggctg tgcatccggg gcgcgctcga ccgccgaaac
      961 cacgtcgcgg ctgccggacg tgggggcgag cgtgagcgac gacgacgtcg acgatgcggc
     1021 gtcgagatct cgactcaaat cagaagacgg cttcgccggc gcattgcacg ccgcaactcc
     1081 agtgacggcg gccagcgtca atccggataa ccatgccgag cgttttgtct tcaccgcatc
     1141 ctccacagga tcatcgatta aagctacact ctatagtact cggcatcggc ccgcaggagc
     1201 cattaaatat ccggtggtat cgtgtagaac gatcgttcgg aaaatttacc ggccagaccc
     1261 gaggaaatca cccgaatgtg cccatttcgt gcaaaggtag ggtgatttcg ccagcacatt
     1321 ggtagcacat tagtagtatc gacgttagga gcatcgacgg gtggacacgt ttctgggaag
     1381 agcacttact gacgccgcga ctggcctgcc gaacatcccc tatttcagaa tcatccagaa
     1441 ttgggaggaa cggcgggctc gtcgcaggaa caccatggtc agggtgatac gggtcgctgt
     1501 ggagggtggc accgacattt cgcgccgcgc tctgctctgg cgactctgcc aggaactccg
     1561 gacttccgat ctcatcgcgt cggagggccg ggacactttc catattctgc tcacgacccc
     1621 cgacgctgaa aatgccgttt cgatcgccga gcgagtgcag cacctcggcg acatgcccgg
     1681 ggagagtggc gagaagggcg aggtggacgg cgcgtcgccg ctcgtgctca ggaccgagat
     1741 cgagccaccg acgcagtatg tcgcggaaaa ggggccgtgc gatccgtgcg aggaacacga
     1801 gctgatcaag ccgccgcctc gcgatgagat cgatgacgag cccgaattca agaaccggcc
     1861 gtaaccgatc cgcacgacct gcacgcatgt gctggcgtaa tacacgctgg ccggcgccgg
     1921 gaccgcagag catcttcaat gctcaccaat aacctggaag tctcgtttga ctgacgaacc
     1981 cggattgcgc gcgcccatcc atcatcggcg tgcgcatctc acgcagggcc gcaccatggc
     2041 tatcgccggc cgctgctctg tcgcactgat cgcgctctcc ctgttcagcg gatcggacgc
     2101 gctggcacaa tcagccagat ccaaaccgag caagcccacg ccgaccaggc cggcgtccac
     2161 tgcggcatct gctgcggcat ctgcgaagcg ggcggaggag ttcgtgttga agagcggcaa
     2221 cgacacgatt gctgtcgaga cgatgcagca gaatggcaac gacatcaccg ctgcgatgga
     2281 tgcgcgtggc agcagtcgtt acacgctgga tctgaaagtc gattcgcaga gcctcgtgtc
     2341 gcgactcgag atcaaggcat acggtgaagc gagtacgacg cccaccgcgc acgcgatagt
     2401 cgcaatcgtc ggtgacagcg tcttcgcgca ggtcggcacg ggaatacaac gcgccgcgac
     2461 gaaggtcggt gcgattccgt gggtaaatcc gtcgttcgcg ttgctgcagg ttctcgtaca
     2521 gcgggcacac cggctcggga cagctccagc cacgatcccg ctctttctca tcgaaggcgg
     2581 cagtaccgta tcggcgactg ttacacgggt tggcgcggat tccacagttg tggaagtggg
     2641 cggtgcggag ctgcggttgc acacttctcc gagtggagaa gtgctgggtg gtgcagttcc
     2701 ggcacagcgc acggagatag tgcgccgcac gattccatat gcggcgaccg gtgtcgcact
     2761 tgcaaagccg gattactccg cgcctgcgaa cgcgccgtac acgagtgaag atgtgagagt
     2821 gaacacgccc ggatcatacg tgcttgcggg aacactcacg atgcccagga accgcaacgc
     2881 gcgcgttccc gcggtggtga tgataacggg ctcgggactc gaggatcgcg acgagactgt
     2941 tccaggcgtc aacggttatc gtccctttcg tcagatcgct gacacgctca gcaggcgcgg
     3001 catcgcggtt ctgcggatgg atgacaggag cttcggtgaa tcgggcggcg acgcaacctc
     3061 cgcaaccaca gccgatttcg cgaacgacat tcgcgcggcg ctcgcgtatc tcaagtcgcg
     3121 tccggacata gatgacaggc acctgttcct gatcggacac agcgagggtg gcgagatcgc
     3181 tcccatgatt gccgcgaccg atccatcgct tgcgggaatc gtgacgctcg ccggtccggc
     3241 ggcgaccggt cgcgagatca gccacgcgca gcttgcatat gccgtttcgc gcgactccgc
     3301 gctcagcgcc gctcgccgcg attccatctt gaacgggcag gacgcgatcc tggattccgc
     3361 cgccgcacat cagccgtggg tgaagtacta tctgtcgtac gatccgatcg cgacggcgaa
     3421 gagcgtgcgt gtgccggctc tcgtgctgca gggcggtaac gaccggcaga tcagtccgga
     3481 tcaggccgag aagcttgcgg ccgcgctacg tgccggcggt gacaaggacg tcacggttca
     3541 cgtctttccg gagctcgacc atctatttct ggtggacccg actggtgacc cgagcagcta
     3601 tccgcgactc ccgtcaaaga ctattggagc cgatgtcctg ggaacgat
//
LOCUS       DATIMD010000475         7438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_192317, whole genome shotgun sequence.
ACCESSION   DATIMD010000475 DATIMD010000000
VERSION     DATIMD010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7438
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192317"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VLI40_10530"
     CDS             <1..207
                     /locus_tag="VLI40_10530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97657.1"
                     /translation="FATHAHIRGIDAVATGEDATSLRRGAADSVKRVKVRQPDIDWSS
                     DRTESVYEIRNFVEFKTVWHPIGA"
     gene            complement(626..2752)
                     /gene="ppk1"
                     /locus_tag="VLI40_10535"
     CDS             complement(626..2752)
                     /gene="ppk1"
                     /locus_tag="VLI40_10535"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HSU97658.1"
                     /translation="MAVNSELFINRELSWLAFNARVLNEAFDARNPLLERLKFLSIFS
                     TNLDEFYMVRVAGLRRQLLAGVTAATGPDGMTPAELVSAIRARILELVERQQHCLHDI
                     LLPALEGQGVRLVTMSELSAGEWQTVDDFFESDIFPVLTPLAVDPTHPFPYISNLSLS
                     LAVQLYDPDNKVERFARVKIPKSLPRWVGVGRANHFVPVEQVISANLGALFPGMEILG
                     SWAFRVTRYSDLEVKASDETEDLLTAIEEQVFQRRFTEVVRVEVQTGVPDEIRAILVD
                     ELREEQTPEFALTPEDVVDGGSLLELGDLMALATLDIPELRDPPFAPVTPVRLRDTTR
                     SIFDVIKERDLLVHHPYESFTASVEQFVQAAALDPDVLAIKMTLYRTSGDTPIVRALT
                     DAAERGKQVAVLVELQARFDEANNITWARTLEDYGVHVAYGLPGLKTHAKTTLVVRRE
                     PDGIRRYVHVGTGNYNSKTARLYTDLGLFTVSRSIGADITDLFNALTGFSRQRLYRKI
                     LVAPANMRDRLMDMIRRETALASAGKSGRIIAKMNSIVDEQIIEALYDASRAGVEIDL
                     IVRGICCLRPGVPGASDNIRVMSVIGRFLEHSRLFYFANDTEPEYYIGSADWMTRNFD
                     RRVEAIVPVDDVLLHEKLYAILRTSLEDNREAWDLASDGSYTQRNPGTGPVRATQEIF
                     LRDPWGGAPPELRLEDARVVHASRRG"
     gene            complement(2753..3790)
                     /locus_tag="VLI40_10540"
     CDS             complement(2753..3790)
                     /locus_tag="VLI40_10540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HSU97659.1"
                     /translation="MIGYVVAIIIVAFVFDFSNGFHDSANSIATIVGTRVLSPVAAVV
                     WAASFNFLALFTVGTAVAKTVGSGMIDVAIVNPNVVLAALLGAIAWNIITWSYGIPSS
                     SSHALIGGYAGAAIAKSGWAAIVWGAKWIETLSFIVISPIVGLVVGLLLMTAIYWIFR
                     RANPGKTDRLFRTLQLGSSALLSLAHGGNDAQKTMGIIVGLLVSVRSLTAHQTGLLGH
                     LYVDNANGVPFWVEVTAYTAISLGTLFGGWRIVATMGRRITKLRPVGGFAAETAGALA
                     ILGATSLGIPVSTTHTITGSIVGVGATTRLSAVRWGLARRIVWAWIVTIPAAGIMAAI
                     AYWILASIVKL"
     gene            complement(3794..4405)
                     /locus_tag="VLI40_10545"
     CDS             complement(3794..4405)
                     /locus_tag="VLI40_10545"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HSU97660.1"
                     /translation="MRLIPRDEQFYELFTQLAERLSLAARLLNQLFREPERRAEHVQA
                     IKSAEHEADEITREIIDRLDRTFITPFDREDIHQLASALDEVVDLLDGAARRVEIFRI
                     TTVHQAAVTLSEVMVRAAVQVEGAVRGMKDPKVVGLKAQELKRLEEEGDAIYHESMGA
                     LFDGALDAIEVIKWKELYDKVEDALDQAEDVANVLQSIALKNG"
     gene            complement(4481..5218)
                     /locus_tag="VLI40_10550"
     CDS             complement(4481..5218)
                     /locus_tag="VLI40_10550"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HSU97661.1"
                     /translation="MIPVGTSLPTRRIAWMNYLIILVTIAVWIQVEGAGVDQVRLAAT
                     ICNLGMVPGEITHVAPIGLAVPLGRGLACVVDNDPINILTPLFSIFLHGSWAHLLGNM
                     LFLWVFGRGIEDTMGHGRYLAFYLICGLVACLAQIASSPGSPVPTVGASGAISGIMGA
                     FLVLYPNVRVKMFFFIILADVRAWIVLIYWFLLQLFEGIATSGQAGSEFSSGVAVWAH
                     VGGFVTGVLLIKFFTSRGTVAAPLRRG"
     gene            5399..7321
                     /gene="dnaK"
                     /locus_tag="VLI40_10555"
     CDS             5399..7321
                     /gene="dnaK"
                     /locus_tag="VLI40_10555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HSU97662.1"
                     /translation="MAEKVIGIDLGTTNSVVSVMEGGDPVVIPNAEGGRTTPSVVAFA
                     KDGERLVGQIAKRQAVTNPANTVFSIKRFMGRKLNEISEEKTRVPYKVEAGANEMVVV
                     EVQGKKFSPPEISAMILQKMKQTAEDYLGTKVTKAVITVPAYFNDSQRQATKDAGKIA
                     GLDVLRIINEPTAAALAYGLDKKKDEKVAVFDLGGGTYDISVLELYDVEGSRQFEVKS
                     TNGDTHLGGDDFDQRVIDWLVTEFKRDQGIDLSKDPMALQRLKEAAEKAKMELSTTQS
                     TDINLPFITADQTGPKHLNYSLTRAKFEQLVDDLIKRVIPPMQQALKDAGIQPNEIDE
                     VLLVGGSTRIPKIQDEVKKFFGKEPNKGVNPDEVVAIGAAVQGAVLTGEQKDVLLLDV
                     TPLSLGIETLGGVMTVLIPRNTTIPTKKSETFSTADDNQSTVEIHVLQGERELATYNK
                     TIGKFQLTGIPPAPRGVPQVEVTFDIDANGILNVTAKDKATNKEQKIRIEASSGLSDA
                     EIDRMVKDAEKNASEDKTRREQIDARNRLDSLAYEVEKNSKEWGDKLGDDMRKRLEAG
                     VEKARTALRGDDVAAINAAAEELSKLYSEAGQAFYQSQNQTAQPGEPAAAPEAEKPAE
                     DNVVEADYEIVDENKK"
BASE COUNT         1609 a         2351 c         2144 g         1334 t
ORIGIN      
        1 ttcgcgacgc acgcacacat ccgcggaatc gacgcagtgg caacgggtga agatgcgacg
       61 tcgctacgcc gcggcgctgc cgacagcgtc aagcgcgtga aggtacgtca acccgacatc
      121 gactggtcgt cggaccgcac ggaaagcgtc tacgagattc ggaatttcgt cgagttcaaa
      181 accgtctggc atccgatcgg ggcttaagta tttaaaggtg tagattactg aatgcctgcg
      241 accgtcggag actacgtact aaccgaccat gccaccgacg aaatggcacg tcgtgcaatc
      301 cccgttactc tcgttgattc agttctacga tcgccgacgc aacgatggac gttctgggag
      361 ggccgtgatt ggagagctta tgaaagtcaa atacgactcg cgcactgaca cgcttagcat
      421 tgtgcttcaa gacaaccgtc ccgtagctga aagcgatgag gacaagccgg gggtcattct
      481 cgactatgat tccgagggga atctcctggg tttagagatt cttgatgcat cgcgtcgggt
      541 gagcaacgct acgaaaatgg agtttcaggc agcgtagatc acgccgctag cgcgtaatgg
      601 gaccttctgc ggtgccgatc cagaatcacc ctctgcgcga ggcgtgcaca acgcgcgcat
      661 cttccagccg aagctccggc ggcgccccgc cccacgggtc gcgcaggaat atctcctgcg
      721 tcgcacgcac cggcccggtt cccggattcc tctgcgtgta gcttccgtcc gacgcaagat
      781 cccacgcttc gcggttgtct tccagcgacg tccgcagaat cgcatacagc ttctcatgca
      841 acaatacgtc gtcgaccggg acgattgcct cgactctccg atcgaagttt cgcgtcatcc
      901 agtctgccga tccgatgtag tactccggct cggtgtcgtt cgcgaagtag aacagccggg
      961 agtgctcgag gaatctgccg atcacgctca tcacgcgaat gttgtcactg gcgcccggaa
     1021 cgcccggacg caggcaacag atgccgcgca ctatgagatc gatctcgaca ccggcgcgcg
     1081 atgcatcgta cagtgcctcg atgatctgct cgtccacgat ggaattcatc ttcgcaatta
     1141 tgcgtcccga ctttcccgca ctggcgagtg cagtctcacg gcggatcata tccatcaacc
     1201 tgtcgcgcat gttcgccggc gcgaccagga tcttgcgata caggcgttgc ctcgaaaatc
     1261 cggtgagtgc gttgaacaga tcggtgatgt cggcgccgat cgaccggctc actgtgaaca
     1321 atcccagatc ggtgtacaac cgcgccgtct tggagttgta gttgccggtt ccgacgtgca
     1381 cgtatctgcg aatcccatca ggctcgcgcc gcaccacgag tgtggtcttg gcgtgagtct
     1441 tcagtcccgg tagtccatac gcgacgtgaa cgccgtaatc ttccagcgtt cgcgcccagg
     1501 tgatgttgtt cgcctcgtcg aatcgcgcct gcagctcgac cagcaccgcg acctgcttgc
     1561 cacgctccgc ggcatcggtc agcgcgcgca cgatcggcgt gtcgccggag gttcggtaca
     1621 gcgtcatctt gattgcgagc acgtctggat cgagcgctgc tgcctgaacg aactgctcca
     1681 cgctcgcggt gaacgactcg tacggatggt gcacgagcag atcccgttcc ttgatcacat
     1741 cgaatatcga gcgcgtcgta tcgcgcagac gaaccggtgt cacgggcgcg aacggcgggt
     1801 cgcgcagctc cgggatgtcc agcgtcgcga gtgccatgag atcacccagc tcgagcagtg
     1861 agccaccatc cacgacgtct tccggagtga gcgcgaattc cggcgtctgc tcctcgcgta
     1921 gctcgtcaac gaggatcgca cggatctcgt ccggcacacc cgtctgcacc tcgacgcgca
     1981 cgacctccgt aaaccggcgc tgaaagacct gctcctcgat ggcggtaagc agatcttcgg
     2041 tctcgtccga tgcctttact tccagatcgg aatatcgcgt cacacgaaac gcccagcttc
     2101 ccaggatttc cattcccggg aacagcgcgc cgagatttgc gcttatgacc tgctccacgg
     2161 ggacgaagtg atttgcacgt cccacgccta cccagcgcgg cagactcttc ggaatcttga
     2221 cgcgcgcgaa ccgctcgacc ttgttatccg gatcgtacag ctgcaccgct agtgacagcg
     2281 aaaggttcga gatgtacgga aatggatgcg tcggatccac ggcgagcgga gtgagcaccg
     2341 gaaagatgtc cgactcgaag aagtcgtcca ccgtctgcca ctcgccggca ctgagctcgc
     2401 tcatcgtcac gagtcgcaca ccctgccctt cgagcgccgg cagcagaata tcgtgcaggc
     2461 agtgctgctg cctttccacg agctccagaa tgcgcgcgcg aatggcgctc acgagctccg
     2521 cgggtgtcat tccatccgga cccgtcgccg cggtcacacc ggcgagaagc tggcgcctca
     2581 gtcccgccac gcgaaccatg tagaactcgt ccagattcgt actgaagatc gacaggaatt
     2641 tgagccgctc gagcagcgga ttgcgtgcgt cgaacgcttc gttcagcacg cgagcgttga
     2701 acgcgagcca gctcagctca cggttgatga acaactcgga attgactgcc atctagagtt
     2761 tgacgatcga cgccaggatc cagtaagcaa ttgcagccat gatgccagca gccggaatcg
     2821 tcacgatcca ggcccagacg attcgccgcg ccagtcccca gcgcaccgcc gacagcctcg
     2881 tcgttgcgcc gacaccaacg atcgagcccg taatggtatg cgtcgtactc acggggatac
     2941 cgagcgacgt cgcacccaga atcgcgagcg ccccggcggt ttcggccgcg aatcccccta
     3001 ctgggcgcag cttggtgatg cgccgcccca tcgtcgcaac tattcgccat ccgccgaaca
     3061 gcgtgcccag cgagattgcg gtgtatgcag tgacctcgac ccagaacggg acgccgttgg
     3121 cattgtcgac gtacaggtgt cccagcagac cggtctgatg cgcagtgagt gagcgaacgg
     3181 aaacgagcag gccgacgatg attcccatcg tcttctgcgc atcattaccg ccgtgcgcca
     3241 gcgataacag cgcggagctg cccagctgca gcgtacgaaa gagccggtca gtcttgccag
     3301 gattggcgcg ccggaatatc cagtagatcg ccgtcatcaa caacaatccg acaacgagtc
     3361 cgactatcgg ggagatcacg atgaacgaca gcgtctcgat ccatttggcg ccccacacta
     3421 tggcagccca tcccgacttc gcgatcgctg cacctgcata gccgccgatc agcgcgtgcg
     3481 acgagctgga cggaattcca tagctccacg tgatgatgtt ccacgcgatc gcgccgagca
     3541 acgctgccag caccacgttt ggattgacga tcgcgacgtc gatcatcccg cttccaactg
     3601 tcttcgcgac tgcagtgccg acggtgaaca gcgcgagaaa attgaacgac gcggcccaga
     3661 ctacggcagc aaccgggctc agcactcgtg taccgactat cgtcgctatc gagtttgcgg
     3721 aatcgtggaa gccgttactg aaatcgaaga cgaacgcgac gatgattatc gcgacgacat
     3781 aaccaatcac acgctatccg ttcttgagtg cgatcgactg caggacgtta gcgacgtctt
     3841 ccgcctggtc cagtgcatcc tcgaccttgt cgtacagctc cttccacttg atcacttcga
     3901 tcgcgtcgag cgcgccgtcg aacagcgcgc ccatcgactc gtggtagatg gcgtcgccct
     3961 cttcctccag cctcttgagc tcctgagcct tgaggcccac gactttcggg tccttcattc
     4021 cgcgcaccgc accctcgacc tgcactgccg cacgcaccat cacttcggaa agcgtgaccg
     4081 cggcctgatg aacggtagta atgcggaata tctcgacccg ccgtgctgcc ccgtccagca
     4141 gatcgaccac ttcgtccagc gccgacgcga gctgatggat gtcctcgcgg tcgaacggcg
     4201 tgatgaaagt cctgtccagg cggtctatta tctcacgcgt tatctcgtcc gcttcgtgct
     4261 ccgccgactt gatcgcctga acatgctcag cccgccgctc tggctctcgg aaaagctggt
     4321 tcaacagccg cgccgcaagc gacagacgtt cggcgagctg ggtgaataat tcgtaaaact
     4381 gctcgtcgcg gggaatcagc cgcacacttc tctccagata aaataaagcg cacgatacgg
     4441 gcgacacatg tgtcgcccgt accgcctcgc ccgtacgaag ttagcctctc cgtagcggtg
     4501 cagccaccgt tccgcgcgaa gtgaagaact tgatcagcaa tacgccggtc acaaatccac
     4561 caacgtgagc ccacacggcc actccgctcg agaattccga ccctgcctgg cccgatgttg
     4621 cgattccctc gaacagttgc agcagaaacc agtaaatcag gacgatccac gcgcggacgt
     4681 ccgccagaat tatgaagaag aacatcttca cgcgaacatt tggatacaac accaggaacg
     4741 cgcccataat ccccgaaatc gcccccgacg cacctaccgt cgggacgggc gatccggggc
     4801 tcgacgcgat ctgcgccaga cacgccacga gtccgcagat gaggtagaag gccagatacc
     4861 ggccgtgccc catcgtatcc tctatcccgc gtccgaacac ccacagaaag agcatgttgc
     4921 cgagcaggtg cgcccagctg ccgtgcagga aaatcgagaa caacggcgtc aggatgttga
     4981 tcggatcgtt gtccaccacg catgccagcc cgcggccaag cggaacggcc agcccgatcg
     5041 gcgcgacgtg ggtgatctcg cccggcacca tccccaggtt gcaaatcgtc gccgcgagcc
     5101 gcacctgatc cacgccggcc ccttcgacct gaatccagac agcgatcgtg accagaatga
     5161 tgaggtagtt catccacgca atgcgccgag tcggcaggct ggttccgact gggatcatgc
     5221 gtttgcccgc gactgcgcca ttctggcagg aaagttcggc atttgcgttg ctctaggaat
     5281 aagtcgcaga tagcaccgtg cggtagtcag caacgacgcc cacatgctcg gggcttgcag
     5341 tactgcagag catcgctgct ctccggcgtc gttttcaccc gaaccagata atacagtcat
     5401 ggcagaaaaa gtcatcggca tcgacctcgg caccaccaac tccgtcgttt cggtaatgga
     5461 aggcggagat ccggtcgtca tcccgaatgc ggaaggcgga cggaccacgc cgtcggtcgt
     5521 tgcattcgca aaagacggcg agcgcctcgt aggccagatc gccaagcgcc aggcagtcac
     5581 caacccggcc aatacagtct tctcgatcaa gcggttcatg ggtcgcaagc tgaacgagat
     5641 cagcgaggaa aagacccgcg ttccgtacaa ggtcgaagca ggcgcgaacg agatggtagt
     5701 cgtcgaggta cagggcaaga agttctcccc gcccgagatc tccgcgatga ttcttcagaa
     5761 gatgaagcag accgctgagg attacctcgg caccaaggtc accaaggccg tcatcacagt
     5821 tcccgcttac ttcaacgact cgcagcgtca ggccaccaag gacgccggca agatcgccgg
     5881 tctcgacgtg ctgcgcatca tcaacgagcc gaccgcggca gcgctcgcgt acggcctcga
     5941 taaaaagaag gacgagaagg tcgcagtgtt cgacctgggc ggcggtacgt acgatatctc
     6001 cgtgctcgag ctgtacgacg tcgaaggctc gcgtcagttc gaggtcaaat ccaccaatgg
     6061 tgacacgcac cttggcggtg acgacttcga tcagcgcgtg atcgactggc tcgtcacaga
     6121 gttcaagcgc gaccagggca tcgatctttc caaggatccg atggcgctgc agcgtttgaa
     6181 ggaagcggcc gaaaaggcca agatggagct gtcgaccacg cagtcgaccg acatcaatct
     6241 tccattcatc accgctgacc agaccgggcc caagcacctc aactattcgt tgacgcgcgc
     6301 caagttcgag cagctcgtcg acgatctcat caagcgcgtg attccgccga tgcagcaggc
     6361 gttgaaggac gccggaatcc agccgaacga gatcgacgaa gttctcctcg tcggtggctc
     6421 gacgcgtatt ccgaagattc aggacgaggt caagaagttc ttcggcaagg agcccaacaa
     6481 gggcgtgaat ccggacgaag tggtcgcgat cggcgcggcg gttcagggcg cggttctcac
     6541 cggcgagcag aaggatgtat tgctgctcga cgttacgccg ctgtcgctcg gaatcgagac
     6601 gctcggtggc gtcatgacgg ttctcatccc gcgcaataca acgattccga ccaagaagtc
     6661 ggagacgttc tctaccgcgg atgacaatca gtcgaccgtc gagatccacg tgttgcaggg
     6721 tgagcgcgag ctcgccacgt acaacaagac aatcggcaaa ttccagctca ccggaattcc
     6781 gcccgcaccg cgcggcgtgc cgcaggtcga agtcacgttc gacatcgatg caaacggaat
     6841 cctcaacgtc accgcgaagg acaaggcgac gaacaaggag cagaagatcc gtatcgaagc
     6901 gtcgagtggc ttgagcgacg ccgagatcga tcgcatggtc aaggacgccg agaagaacgc
     6961 gagcgaagac aagacgcgcc gcgagcagat cgacgctcgc aaccggctgg actcgctagc
     7021 ctacgaagtc gagaagaact ccaaggaatg gggcgacaag ctcggcgacg acatgcggaa
     7081 gcgtctcgaa gccggtgtcg agaaggcgcg gaccgctctg cgtggcgacg acgtcgcggc
     7141 cataaatgcc gccgcggagg agctgagcaa gctgtacagc gaggctggcc aggccttcta
     7201 ccagtcccag aaccagaccg cgcagcccgg ggagccggca gccgcgcctg aggcggagaa
     7261 gccggccgag gataacgtgg tcgaggccga ctacgagatc gtcgacgaaa acaagaagta
     7321 gttgtaaggg caggcccccg tgcctgcccc gactacgctc tcaaacggta ccggctgccc
     7381 gacccgggca gccggtacct gctcgcagta cgaagatggt cctggcgcgt ttcgggga
//
LOCUS       DATIMD010000476         3932 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_773156, whole genome shotgun sequence.
ACCESSION   DATIMD010000476 DATIMD010000000
VERSION     DATIMD010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_773156"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..360)
                     /locus_tag="VLI40_10560"
     CDS             complement(<1..360)
                     /locus_tag="VLI40_10560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97663.1"
                     /translation="MSSTRRLRVFTWHVHGNYLWYLSQTPHDFFVPVKPGRPHPYGGR
                     SGSFPWPDNLHEIPADEVRKANFDCVLFQSARNYTQDQFELLTDAQQALPRIYLEHDP
                     PLDHPFAQRHVVTDPDVL"
     gene            complement(353..1390)
                     /locus_tag="VLI40_10565"
     CDS             complement(353..1390)
                     /locus_tag="VLI40_10565"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HSU97664.1"
                     /translation="MRIAVVRALHLGDMLCAVPALRALRAGFPDAEITLIGLPWAREL
                     IPHLSRYIDAFEEFPGFPGIPERAYDASSIVAFLGRMQTRGFDLAVQLHGSGSHINEF
                     TALLGARRTVVFNDGDISGDISGDDSVRWPKHGTEAARLLMLPLALGCPDRGLDLDIS
                     IDDCDREHVRAMIADPFDGHECICVHPGARFPSRRWPAERFAAVADALAGHGYEIVVT
                     GTSGEAPVTRALCNAMHAPALDLTGKLTLGMFAALVSECAMVICNDTGISHVAAATST
                     PSVVVASGSDVARWKPEDESLHRVLWHDVPCRPCMHITCPTAHECATGVGVSDALRAA
                     IDLLASRPSHV"
     gene            1616..3049
                     /locus_tag="VLI40_10570"
     CDS             1616..3049
                     /locus_tag="VLI40_10570"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU97665.1"
                     /translation="MRSRVPRLWTSEAGASWEQVGRAVDAHAIAQTVMAQLTGGVFLT
                     GFALALGAGSFMIGLLAAIPLATKVAQLVLSWWIERAGHWRRWTIAGAAVSRTSLLLV
                     AVLAVTQGYPSIRLALLVAILALSSLAASVFELSFLTWMAELIPEPLRGVFWGKRGRN
                     AGIVGIIASILASLLLDKSSATSSALQPGFAVVFGAGALIGIGGIVFLRTLPAPRRQH
                     SREDGVDLASTLRTPLRDRNYRLFLIFSALWSFTSGAMAPFYMVYMLRRLDLSFLEVT
                     ILTAITNSLMALTQTHWGRLGDHFGTKPVLRIGAYLIALTPLMWLATAPGRAWPVVIV
                     QILSGVGWSAFHVSQSNLVLKLAPADNRPSYLGSFGAATGLAEGTAPLIGGALLALIA
                     TSNVPTVRVFHVMMLIQLVLFAVATFVPRWIVEPGGTAVGHLIRVMARFRQMDASQPV
                     SLVLEYGYTHLARIADLIAREFPRDAE"
     gene            3103..3663
                     /locus_tag="VLI40_10575"
     CDS             3103..3663
                     /locus_tag="VLI40_10575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97666.1"
                     /translation="MTGLLALWLPILVSAVIVFIASAIIHTVLPWHKSDYGAVPNEDQ
                     VSAALRPFAIPPGDYMIPRARSSADLKSPEFRGRLREGPNLIVTVLPNGEWSMGRNLS
                     LWFMYCLIVSALAACLTGLAAPPGSDPHAVFHFVAITAFIGYAVALWQMSIWWRRSWM
                     TTFKATVDGIIYALLTAATFAWLWPR"
BASE COUNT          712 a         1179 c         1218 g          823 t
ORIGIN      
        1 cagtacgtcc ggatccgtga ccacatgccg ctgcgcgaag gggtgatcga gcggcggatc
       61 gtgctcgaga tatatgcgag ggagtgcttg ctgcgcatcc gtgagcagct cgaactggtc
      121 ctgcgtgtag ttgcgcgccg actgaaacaa cacgcaatcg aaattcgcct tgcgcacctc
      181 gtcagccgga atctcgtgca ggttatccgg ccagggaaat gaccctgagc ggccaccgta
      241 cggatgcggc cgacccggtt tcacgggcac gaagaaatca tgcggggtct ggctcagata
      301 ccagagatag tttccgtgaa cgtgccacgt gaagacgcgg aggcgtcggg tgctagacat
      361 gtgatggacg ggatgccagt aggtcgatgg ccgcgcggag tgcatccgat actccgacgc
      421 cggtggcgca ttcatgcgcg gtcggacacg tgatgtgcat gcatggccgg cacggtacgt
      481 catgccacaa cacacggtgg agactctcgt cctccggctt ccaccgtgca acgtccgacc
      541 ccgatgcaac gacgacgctt ggtgtacttg tggctgccgc gacgtgtgag attccagtgt
      601 cgttgcagat caccattgcg cactcgctga cgagtgcagc gaacatgcca agagtcagct
      661 tcccggtcag gtccaaggcg ggtgcgtgca ttgcgttgca cagcgcgcgc gtaacgggag
      721 cttcgccgga cgttcccgtc acaacgatct cgtagccatg gccggcaagc gcgtctgcaa
      781 ccgctgcaaa gcgctccgcg ggccagcggc gcgatggaaa gcgcgctccc ggatgaacgc
      841 atatgcattc gtgcccgtcg aagggatcgg cgatcatcgc gcgtacgtgc tcacgatcgc
      901 aatcgtcgat cgatatatcg aggtcgagac cccgatcagg gcaacccagt gcgagaggaa
      961 gcatcaacag gcgtgcggct tccgtgccgt gcttcggcca tcggaccgaa tcgtctcccg
     1021 atatgtcgcc cgatatgtcg ccgtcattga agacaacggt gcgccgggca ccgagcagtg
     1081 cagtgaactc gttgatgtgc gatccgcttc cgtgcagctg aaccgcgaga tcgaatccgc
     1141 gagtctgcat gcgcccgagg aatgcgacga tgctggatgc atcatacgcg cgctccggaa
     1201 tcccggggaa cccgggaaac tcctcgaatg cgtcgatgta tcgcgaaaga tgtggaatca
     1261 gctctcgtgc ccatggaagt ccgatgagtg taatttctgc atcgggaaat cccgcacgca
     1321 gcgcgcgcag agccggcacc gcgcagagca tgtcgcccag atgtagcgcg cgcactacag
     1381 cgatgcgcat cacggacatt caccttccgt gcagggccga tcacttacca ggatactgta
     1441 gttgaagatg ggcatcagtg ctgtgcaaca ttgtggtgag ttgcacaaag caagtcgtgc
     1501 gccgaagcgt ttacttccat gcggcagacg gttcgttcat cgacgagtag catgtgccgg
     1561 tgggttgagc ggcgtttgat gcgctggcgg catggcgtgt gcgggtgcgt gtcgcatgcg
     1621 ctcgcgcgta ccacgactct ggactagcga agcgggcgcg agttgggaac aggttggtcg
     1681 cgctgtagat gcgcacgcca tcgcacagac agtgatggcg cagttgacgg gcggggtctt
     1741 tcttaccgga tttgccctgg cgctcggcgc cggctctttc atgatcggcc tgctcgccgc
     1801 cattcccctt gcgacgaagg tcgcacagct cgtgctgtca tggtggatcg agcgcgcggg
     1861 acactggcgc cggtggacga tcgccggcgc ggcggtatcg cgaacttctc ttctgctcgt
     1921 agcggtcctg gccgtaacgc aaggctatcc gagcatccga cttgcgcttc tcgtcgcgat
     1981 tctcgctctt tcgtctcttg cagcgagcgt cttcgagctg tcgttcctca catggatggc
     2041 cgagctaata cccgagccac tgcggggcgt gttctggggg aagcgtgggc gcaatgcggg
     2101 aatagtgggc atcatcgcat cgattctcgc atcgctgctg ctcgataaat cttccgctac
     2161 ctcgtcagcg ctgcagcccg gattcgctgt tgtgttcggt gcgggcgcgc tgatcggcat
     2221 cggcggaatc gtatttctcc gtacgctgcc cgcgccgaga cggcagcaca gtcgcgagga
     2281 tggggtcgat ctcgcatcaa ctcttcgtac gccgctgcgc gatcgcaact acaggctgtt
     2341 cctcatcttc agtgcgttgt ggagcttcac atcaggcgcg atggcaccgt tctatatggt
     2401 gtacatgctt cgccgacttg acctgtcatt tctggaagtc accatactca ccgccatcac
     2461 gaactcgctc atggcgttga cgcagaccca ctggggcagg ctgggtgacc attttggtac
     2521 caagccggtg cttcgtatcg gtgcgtatct gatagcgctc actccgctca tgtggctcgc
     2581 cacagcgccg ggacgcgcgt ggcctgttgt gatcgttcag atactgtcag gagtcggctg
     2641 gagcgccttt cacgtaagtc agagcaatct ggtcctcaag cttgcgccgg ccgacaaccg
     2701 gccgtcgtat ctcggatcgt tcggtgcggc aacgggactg gcagagggga cggcgcctct
     2761 tatcggcggt gcgttgctgg cgctcatagc gacgagcaac gtgcccacgg tccgggtgtt
     2821 tcatgtgatg atgctgattc agctggtact cttcgcggtc gccacttttg tcccgcgctg
     2881 gatcgtcgag ccgggtggaa ccgcggtcgg gcatctgatt cgcgtcatgg cgcgattccg
     2941 ccagatggat gcaagtcaac ccgtatcgct cgtactggag tatggataca cccaccttgc
     3001 gcgaatcgcg gacctgatcg cgcgcgaatt cccgagggat gcggaatagt ggaccggccc
     3061 ccgttgatgt aagttcttgc gacgctcaaa acggagatgg tcatgaccgg gctcctcgct
     3121 ctctggctgc cgatccttgt ttccgcggtg attgtgttca tcgcaagcgc gatcattcac
     3181 actgtgctgc catggcacaa aagcgactat ggcgcggtgc cgaacgagga tcaggtgagc
     3241 gcagcgctca ggccgttcgc gataccaccg ggcgactaca tgattcctcg ggccagaagc
     3301 agcgcggatc tcaaatcacc agaattccgc ggtcgcctgc gggagggccc gaatctcatc
     3361 gtcaccgtgc tccctaacgg tgaatggtcc atgggccgaa acctcagcct gtggttcatg
     3421 tactgtctca ttgtcagcgc tctggcggcc tgtctgaccg ggctcgccgc gcctcctggc
     3481 tccgatcccc acgcagtatt tcatttcgtc gccattactg cattcatagg atatgcagtg
     3541 gcactgtggc agatgtcgat ctggtggcgc cggtcgtgga tgaccacctt caaggccacg
     3601 gtcgacggca tcatctacgc cttattgacg gcggctacct ttgcgtggct ctggccacga
     3661 tagtgccgca tcgccaccgg tcggcctgaa ctcggcttgc ataccgaaag tggggggttc
     3721 catagaatta ggtaggtagc tatctatcta acttcatgcg ctcctcccac aaccatccca
     3781 cctcgcccag ggaagcactc gaagtgtcct tcgtcgcgac actgtgcccc ctcagggaaa
     3841 agctgcgtcg ctgctacgac aatgagctta ccgcgttcgg tctctctcgc gcgctcgcga
     3901 ccccgctcgt ccggatctgg cagaacgacg gt
//
LOCUS       DATIMD010000477         2747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4235431, whole genome shotgun sequence.
ACCESSION   DATIMD010000477 DATIMD010000000
VERSION     DATIMD010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4235431"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1007
                     /locus_tag="VLI40_10580"
     CDS             <1..1007
                     /locus_tag="VLI40_10580"
                     /inference="COORDINATES: protein motif:HMM:NF016817.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="succinylglutamate desuccinylase/aspartoacylase
                     family protein"
                     /protein_id="HSU97667.1"
                     /translation="LSATMKAPVQIRDVCAGSGGRVQGWLTIGETPSGPLRVPLVIIN
                     GREDGPILCMTAGVHATEYAPIDAVMRLLQTIRPETLRGAVIGVPVTNMRMFETRTGF
                     VSPLDGLNLNKIAPGTRDGSISEVLADVLLREVIGAAQYHIDFHAGDVGELLLPFAGY
                     SMTGDHALDLQGEALARAFSPDLISLSTQGSPIPPFPGSLNYSATRNGVVSILAEAGG
                     NGTLEEADVQTHLDGAHNVMRHLGMIEGSSRTETQQRVAARDRVIVRAKRSGLLRLKV
                     QIGDQIVTGQEVAEIYNVFGEVIERVSAAGSGVAGLVWTHKVVNTGDPIVRYWITEPA
                     "
     gene            1057..2541
                     /locus_tag="VLI40_10585"
     CDS             1057..2541
                     /locus_tag="VLI40_10585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSU97668.1"
                     /translation="MLEQDDTAPIRAAIPGAEKRSQVAQAQEMNVVPNFLDARGCPTT
                     AANPESVRLLDHTIEGYLGACADTRDRLDVLLAADPDCVMGHCLDGYFRILSSKRDSM
                     KHATAVLAAAIAAAARSHPTRREQLHLAALGAWSQGDMRGAVEHWDTVLTENPRDIVA
                     LKVSQFVLSYLGESERMRDTVARVLPDWDSAVPGYGFALGCYAYGLEESGEYGRAEEM
                     GRRAVELNAGDIWAAHAVAHVAEMEGRLHDGIAWIESASHAWDSCNNFALHLRWHEGL
                     LHLDLERYGRVLELYDREVRRQQTDEYLDVTNAVSLLWRLEQAGVDVGGRWRELGDCS
                     RGHVSDHALVFADLHYLMALAAVNDAAAIDRFLDSCRRFARSGSGTEATVMTEIGLPL
                     ADAVLAHRRGSYGDVVDTLMPLRRTFRRIGASHAQRDVFDQLLIDSAWRGRRLDAAAE
                     LLAERTARRPRNIWAWKHYADVLEASGATSAAAARATLDRLRAE"
BASE COUNT          545 a          790 c          913 g          499 t
ORIGIN      
        1 aactaagcgc caccatgaaa gcaccggtcc agattcgaga tgtttgcgca ggaagcggtg
       61 ggagagttca gggctggttg acgatcgggg aaaccccgag cggacctctt cgcgtgccgc
      121 tggtgataat caacggtcgc gaagacggtc cgatcctttg catgaccgcg ggcgtacatg
      181 cgaccgagta cgcgccgatc gatgcagtca tgcgactgct gcagacgatc cgcccagaga
      241 ccctgcgcgg agccgtgatc ggcgtgccag tcaccaacat gcgcatgttc gaaacgcgca
      301 ccgggttcgt gtcgcctctg gacggcctca acctcaacaa gatcgcaccg ggcaccagag
      361 acggatcgat ttccgaagtt ctcgccgatg tgctgcttcg tgaagtgatc ggtgcggctc
      421 agtatcatat cgactttcat gcgggcgatg tcggcgaact gttgctgcca ttcgccgggt
      481 actcgatgac gggcgatcac gccctcgatc ttcagggtga ggcgctcgcg cgagcattct
      541 cgcccgatct catctcgctc tccacgcagg gcagtccgat tccgccgttt ccaggatcgc
      601 tgaactattc ggcgacgcgc aatggcgtcg tttccattct cgcggaagcg ggtgggaacg
      661 gtaccctgga agaagccgac gttcagactc atctggatgg cgctcataat gtgatgcgcc
      721 acctcggcat gatcgaaggc tcatcacgca cggaaacaca gcaacgcgtg gcggcgcgcg
      781 atcgagtgat cgtgcgcgcg aagcgttccg gactcctgcg actcaaggtg cagatcggcg
      841 accagatcgt aacagggcag gaagtggcgg agatatacaa cgtgttcggc gaggtcatcg
      901 agcgtgtcag cgcagctgga tcgggggtcg caggactggt ctggacgcac aaggtagtga
      961 ataccggcga cccgatcgtg cgctactgga tcacggaacc cgcctagacg ggcgagcgta
     1021 tagagagtcc gacgaacgcg tggtacgagc agtaatatgt tggagcagga tgataccgcg
     1081 ccgattcgcg ccgcgattcc gggcgccgag aagcgcagcc aggtggcgca agcgcaggag
     1141 atgaacgtcg tgccaaattt cttggatgca cggggctgcc cgactacggc ggcgaatccc
     1201 gagagcgttc gactgctcga tcacacgata gaagggtacc tcggcgcgtg cgcggatacc
     1261 cgtgaccggc tcgatgttct gcttgccgca gacccggatt gcgtaatggg tcactgtctt
     1321 gacggttact tccgcatact gtcgagcaag cgtgacagca tgaaacacgc aacggcggtg
     1381 cttgcagccg ccatcgccgc agcggcgcgc tcccacccga ctcgacgtga gcagttgcac
     1441 ttggcggcac tcggtgcctg gtctcaaggc gacatgcgcg gtgcggttga gcactgggat
     1501 acggtgctga ctgaaaatcc gcgcgatatc gtcgcgctca aagtatcgca gttcgtactg
     1561 tcgtatctgg gcgagagtga gcgcatgcgc gataccgtcg ccagggtgct tcctgattgg
     1621 gattcggcgg ttccgggtta cgggttcgcg cttggatgtt acgcgtacgg gctcgaggaa
     1681 tccggcgagt acggacgagc cgaggagatg ggacgtcgtg cggtagagct gaatgcgggc
     1741 gacatctggg ctgcgcacgc ggtcgcacat gtcgccgaaa tggaaggacg gctgcacgac
     1801 gggatcgcat ggatcgaaag cgcgtcccat gcatgggaca gctgcaacaa tttcgcgctg
     1861 cacctgcgct ggcatgaggg actgttgcac ctggatctgg agcggtacgg tcgggtactc
     1921 gaattgtatg accgcgaagt gcgacgccag cagacggacg agtacctcga cgtcaccaac
     1981 gccgtgtcgc tgctatggcg cctcgagcag gctggagtcg acgttggcgg acgatggcgc
     2041 gaactcggcg attgttcacg agggcacgtg agcgatcacg cgctcgtatt cgccgatctg
     2101 cattatctga tggctctggc ggctgtgaac gatgcagctg cgatcgatcg gttcctggat
     2161 tcctgtcggc ggttcgcgcg aagcggatca ggcaccgaag cgacggtgat gaccgagata
     2221 gggctgccac tcgctgacgc cgtgcttgcc caccgacgcg gttcgtacgg cgatgtggtg
     2281 gacacgctca tgccactgcg gcgcacgttt cgccggatcg gcgcgagcca cgcgcaacgc
     2341 gatgtattcg accagctgct catcgattcg gcgtggcgcg gacgtcgcct ggatgccgcg
     2401 gccgagctgc tcgccgagcg aactgcgcgg cgaccgcgta acatctgggc gtggaagcac
     2461 tacgccgacg tattggaagc gtccggcgcg acgagtgccg cagcggcaag ggccacgctc
     2521 gacaggctgc gcgcagagta gccgcggcgt ccaaacgaga tctgaacgag atccaaacaa
     2581 gatctgaatt cgaaacatga aaccctcgaa aaaacgcgac aggcaactcc ggcctgatac
     2641 gatactgatc cattccggcg gtgatcccga gaatcgcaat ggggcggtca gcgagccggt
     2701 gtatcgcgcg tcgacgatcg tttttccgac ggtggcgcag tacgagg
//
LOCUS       DATIMD010000478         8121 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_193040, whole genome shotgun sequence.
ACCESSION   DATIMD010000478 DATIMD010000000
VERSION     DATIMD010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8121
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193040"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..262
                     /locus_tag="VLI40_10590"
     CDS             <1..262
                     /locus_tag="VLI40_10590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97669.1"
                     /translation="RQSFLMGMVPPEDRSTVAGLSNLPLQVFSSAGPTIAGQLMQSVW
                     LSLPLELAAALQAVNTWLYHVFFRDMRLPEELTAVDVADEPD"
     gene            complement(280..1791)
                     /locus_tag="VLI40_10595"
     CDS             complement(280..1791)
                     /locus_tag="VLI40_10595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97670.1"
                     /translation="MMPIIPALLAALAVVSPHPAAVDPHALVSEAVAAMGIGRKPVGT
                     LRLVGIQHEFMLGNAERAEGPWRAFYSHFSELRDVGAPRLRRTDHAFRADGSEAPERI
                     IVLSDSVLASWTGGRETGASRGTFEDWIDRVELSPDRALRLAASSAQLRLLRTGTRYG
                     VQYDRVELPWRNGTMRIELSRETHLPIAIEAVRPYPDNFRWAPFGDVTMRTDYLDWQL
                     QPWGGWWPMQQQVSFNGQPLRDVTLARTALDSMPAEADSFVVSDSARAQFTAASRMNF
                     ATFRLGMRGQPTELRPGIVRVPDFWSMTLVKQADGVMIFEAHISAQYLHDVIDEAHRR
                     WPGAPIKGIVMTSDPWAHLGGFREAIALGIPIYVNARSIPFLTALARSPHHIQPDAQQ
                     REGRTPKFIPITDKTVVGSGDTRFELYPVGGAYAERMVMAYFPADRLLYGADLVAPTN
                     GPASAHPVFDETEASDLRAAVSREHLSVDSVFCVQNFPHPYSWKVFAPDQKSR"
     gene            complement(2025..3320)
                     /locus_tag="VLI40_10600"
     CDS             complement(2025..3320)
                     /locus_tag="VLI40_10600"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSU97671.1"
                     /translation="MQYHNSNGSGRKPFRNPFGRGVARSVLMLGLAAGTACNSLLDVT
                     NPGVVKSSDLSNPALAPTLDAAALGSFNCAFAQYVATAGVLSEEYIISNSFVDANQWG
                     WRGVETKTQPGTCPGSRATTSLGFYTPLQSARFQAEDAAKRIAAFPDSAVPNRANMLA
                     ELTTYAAYSYVLLGEGMCQMTVDNGPLITRDSTFRIAIAKFTAALALAQTANYAAMTN
                     MALVGRARAELDVGNLAAAKADAQAVPAGFVRNADYSETTVARENRIYNLTIRNDFIS
                     VGPNYRNLTVGGVPDPRVPVLNTGRFGNDAVTPQWQQRKFIGSGAVPMPIASWQEAQL
                     IYAEAAGGQEAKDAINRVRAARGVAPLNGTEGSDIEAIVLEERRRDLFSEGQRLGDML
                     RKNIPFPSGVNHKGQTYGPTTCVPLPDVETQNNPNLRGS"
     gene            complement(3339..6404)
                     /locus_tag="VLI40_10605"
     CDS             complement(3339..6404)
                     /locus_tag="VLI40_10605"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSU97672.1"
                     /translation="MSKRSSSRWLLFAMLLFTGSVVAGGVAKAQSGAASQGTATITGT
                     VVDSAGHAPIAGVQVSAGPAGVTSGTAIKGALTAPNGRFTITGVTAGAVTVRARLLGF
                     APVVRQVNAAAGSVTTVDIALMHQTALLDQVVVTGTAGATQRRAVGNVIETVKATDIV
                     KVAPVSTVGQLIEGRTPGLVVLPSSGQVGSGSQLRVRGVSSLSLTNEPLIYIDGVRMN
                     GDASRGPSQRGGLGTSALDDINPEDIESIEVIKGPAAGTLYGTEASNGVIQVITKRGK
                     TGKPSWNFSQRLGTNWLANPEGRAGTLYSKDPATGLLDSVNLYKHEVQSGNGPIFTNG
                     MLEGTDLSLAGGSDLARYFTSVNYDDDVGVVPWNWAKKLGARANLDLLVGNKLKITAG
                     MGYLRNRTRLAQGAIDIDPFSNLIWGNPLTLNKGQRGFNTSPPEEWSTMESHADVDRT
                     TSNLTLNYTPISWFTNRLVAGLDASTENNWVLYPRQPKGNLDFLGNNGLGSKSVARAL
                     HNFITLDYSGSAKYHRGDNLDFTSSVGLQYYHQDLNTITATGSNFPAIPITTVSGGTT
                     RTGSETYTANATVGVFGQEEMAWRNRLFLTAALRGDDNSAFGKQFKAAYYPKFSGSWV
                     IGEEPWFHVPGVNSLRLRAAYGASGTQPGAFDASQLYAPSVGAADQPGLVPSAFGNPA
                     LRPELSKETELGFESTVIGGSTDISYTHYHRNITDAIVNSPLPPSTGFPGFQVVNIGK
                     VTGWGNELAINTRLITRDKFAWEVGTSYSKNLNRIDDMGGIPFITVAGGQAQNRVGFG
                     VGDIFMYKVLSATIDSAGFVTSALCDGGTGKQGLEMGGKPVPCAQAPRVRWGASQPTW
                     QLGVNTTVTLFKRLRIYASADGNGGNYQSDTEIRALHNLGLTRQVIQRNDPILQEYRS
                     IENDATGTFLASFVRLRELSATYDLPNHFVGRLGANGGSFSLAMRNVAMLWTGAQGWN
                     TSRDGEVYVPVANQHVWDAETRANGQLSQGYQTILPPAASFTATLRLSF"
     gene            complement(6628..8067)
                     /locus_tag="VLI40_10610"
     CDS             complement(6628..8067)
                     /locus_tag="VLI40_10610"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSU97673.1"
                     /translation="MKRFALLFSLLVTAGLASAQTAQTAPQERDVLVTGGWLFASTGN
                     QRVRNPGILIRAGKFLRVGGDLSIAAADAEHVQLADTETVIPGMFDLHAHYAMDLFNA
                     GRKDETTAYPSLFLANGVTSTWPAGEMNPDSMRALRIRIDRGLEPGPRLLNSGPYFGT
                     ARPGWDRNISVDSIYAEVDYWAEHGVRGFKAKGIKPYQLRALIERAHQHGLTVTGHLD
                     SGFGESVNPRDAILMGIDRIEHFMGGDAFTPDRSAYASYEHMTFDTPAFRKIAALYKT
                     QHVYFDATLSAYGYYGKKDPEVYTYYTDEERFLTPYMRSVIAARPPRPVNQQFENIYW
                     TKRKEVKAFYDAGGGDLITLGTDHPSWGEFFTPFAVNRELLSFSLSGIPNAAVLRIAT
                     INSARAIGVGDRLGSIEAGKWADLVVVRGNPLADIRRVRLPRLVIKAGKIYDPQALMK
                     SVEGKIGPASAADTAAWAPTPRQPRRTAR"
BASE COUNT         1523 a         2515 c         2470 g         1613 t
ORIGIN      
        1 gcggcagtcg tttctcatgg ggatggttcc accggaagat cgtagcactg tcgcaggcct
       61 gtcgaatctc ccgttacagg tgttctcgag tgcgggaccg accatcgcgg gtcagttgat
      121 gcagtccgtc tggttgagtc tgccgttgga gctcgcagct gctctgcagg ccgtgaatac
      181 ctggctgtac cacgtcttct tccgcgacat gcgcctgccc gaggagttga cggcagtgga
      241 tgtcgccgac gagccggatt gaacgagtag aatcgctgct caacgcgact tctgatccgg
      301 cgcgaacacc ttccatgaat acggatgcgg gaaattctgt acgcagaaca ccgaatcgac
      361 cgacagatgc tctctgctga ccgccgctcg cagatcggac gcttcggtct catcgaagac
      421 tggatgcgca ctcgccgggc cgttggtcgg tgcgaccagg tctgcgccgt acagcaatct
      481 gtcagccgga aagtacgcca tcaccatgcg ttcagcgtac gcgccgccga caggatacaa
      541 ttcgaaacga gtgtcaccgc tcccaacgac tgtcttgtcg gtaattggaa tgaatttcgg
      601 tgtgcggcct tcgcgctgct gagcgtcagg ctgaatgtga tgcggtgatc gggcgagcgc
      661 ggtgagaaat ggaatactgc gcgcgttcac gtagatcggg attccaagtg caatcgcttc
      721 gcggaagccg cctaggtgag cccacgggtc cgaggtcatc acgatcccct tgatcggcgc
      781 accgggccag cggcgatgtg cctcgtcgat cacgtcatgc agatactgcg cgctgatgtg
      841 cgcctcgaag atcatgacgc cgtcagcctg cttcacgagc gtcatcgacc agaagtccgg
      901 aacgcggaca atcccgggac gaagctctgt gggttgtccg cgcatgccga gccggaacgt
      961 cgcgaagttc atcctggatg ccgccgtgaa ttgcgcgcga gcagagtcgg acacgacgaa
     1021 cgaatcagcc tcggctggca tgctgtcgag cgcagtcctc gcgagtgtaa catcacgcag
     1081 cggctgaccg ttgaatgaga cctgctgctg catgggccac cagccacccc acggctggag
     1141 ctgccagtcc aggtaatcgg tgcgcattgt gacgtcgccg aacggagccc atcggaagtt
     1201 gtcgggatag ggccgcacag cctcgatcgc gataggcaga tgcgtttccc ggctcagctc
     1261 gatgcgcatc gtcccgttgc gccagggcaa ctcgacgcga tcgtactgca cgccgtatcg
     1321 cgtccccgtg cgcagcaagc gcagctgtgc cgagcttgcg gcaagacgaa gcgcccggtc
     1381 aggcgatagc tcgacacgat cgatccagtc ctcgaacgtg cctcgcgatg ctcctgtctc
     1441 acgacctccg gtccacgacg ccagcaccga atcgctgaga acgatgatcc tctccggcgc
     1501 ctccgaccca tcggcgcgga atgcgtggtc ggtacgccgc aatcgcggcg cgccgacgtc
     1561 gcgaagctcg ctgaagtgtg agtagaacgc tcgccacggc ccttccgcgc gctctgcatt
     1621 cccgagcatg aactcatgct gaataccgac caggcgaagc gtgcccacgg gtttgcgccc
     1681 gatacccatg gctgcaacag cctcggacac cagagcgtgc gggtcaactg cggcgggatg
     1741 tggtgacacg accgcgagtg ctgcaagcag cgctggtatt atcggcatca tctatttcga
     1801 atcctttcgg gtcgggaggc tcggcgcatt caggcgacgc gaggccgcga gggcacgggc
     1861 gagcccgctc ggatcaaaga acgaggctgt ggcgctgcga cggtagaggg cattcagtga
     1921 acggtgcgga atcgtgcagc gaacggtcgc ggcgctaaca gataaaaaaa tccccctgcc
     1981 atcagctaga gatggcaggg ggattttgag tcactgctac agaatcacga gccgcgcaga
     2041 ttcggattgt tctgcgtctc gacatcgggc aatggtacgc acgtggtcgg accgtacgtc
     2101 tgccccttgt ggttcacgcc gctcgggaac ggaatgttct tgcgcagcat gtcgccaagg
     2161 cgctgacctt cgctgaacag atcgcggcga cgttcctcga gcacgattgc ctcgatatcc
     2221 gatccttcgg tgccgttgag cggcgcaaca ccgcgtgcag cgcgcacgcg attgatggca
     2281 tccttcgcct cctgtccacc cgctgcttcg gcgtagatca gctgcgcctc ctgccatgaa
     2341 gcgatcggca tcggcaccgc gccgcttccg ataaacttcc gctgctgcca ctgcggcgtg
     2401 actgcatcgt ttccgaaacg ccccgtattc aacaccggca cccggggatc gggcacacca
     2461 ccaacggtga gattacgata gtttggaccg acggatatga agtcgttccg gatcgtcagg
     2521 ttgtagatgc ggttctcacg cgcaaccgtg gtctcggaat agtccgcgtt gcgaacgaag
     2581 cctgcgggca ccgcctgcgc atccgctttc gcagctgcca gattcccgac gtccagctcc
     2641 gctcgagctc ggcccacgag tgccatgttc gtcatcgcgg cgtagttcgc agtctgcgcg
     2701 agtgccaacg ccgcggtgaa cttcgcaatc gcaatcctga acgtactgtc acgcgtgatg
     2761 agcggtccgt tatcgaccgt catctgacac attccctcgc ctagcagaac gtacgaatat
     2821 gcggcgtacg ttgtgagctc ggcgagcatg ttggcgcggt tgggcaccgc cgaatccggg
     2881 aacgccgcta tgcgcttcgc tgcatcctca gcctggaagc gcgccgactg cagtggcgtg
     2941 tagaaaccca gtgacgtggt ggcacgactt ccgggacacg ttcccggctg cgttttggtc
     3001 tccactccac gccagcccca ttgattcgcg tccacgaacg agttggagat tatgtattct
     3061 tccgacaaca cgccggcggt agcgacgtac tgcgcaaatg cgcagttgaa gctgccgaga
     3121 gcggctgcat cgagcgtcgg cgcgagcgcc ggattggaga gatcgctgct cttcacgaca
     3181 cccggattgg tgacgtcgag cagactgttg caggcagttc cagctgcgag cccgagcatc
     3241 agaaccgatc tcgcgacgcc gcgtccgaac ggatttctga acggttttct cccgctgccg
     3301 tttgagttgt gatattgcat cgttggattc ccgtagcgtt agaaggagag ccgcagcgta
     3361 gccgtgaagc tggccgccgg tggcaggatg gtctgatagc cctgtgacag ctggccgttg
     3421 gcacgcgtct ccgcatccca cacgtgctgg ttggcaacgg gcacgtatac ctcgccgtcg
     3481 cgcgatgtat tccagccctg tgcaccagtc cacagcatcg caacgtttcg catcgccagg
     3541 ctgaacgagc cgccattggc gccgagcctg ccgacgaaat gattcggcag atcgtacgtc
     3601 gccgacagct cacgcagtcg aacgaagctc gcgaggaagg taccggtcgc atcgttctcg
     3661 atgctgcgat actcctgcag aatcggatcg ttgcgctgga tcacctggcg cgtgaggcca
     3721 aggttgtgca gcgcgcgaat ctcggtgtcg gactgatagt tgccgccgtt gccatcggcc
     3781 gatgcgtaga tacgcagccg cttgaacaac gttaccgtgg tattcacgcc aagctgccac
     3841 gtcggttgcg aagcacccca gcgtacacgc ggtgcctgcg cgcacggaac gggtttgccg
     3901 cccatctcga gcccctgctt gccagttcct ccgtcgcaca acgccgacgt gacgaaaccc
     3961 gccgagtcga tggtcgcgga gagcaccttg tacatgaaga tgtcgccgac cccgaagcca
     4021 acgcgattct gcgcctggcc gcctgcaacg gtgatgaatg gaataccgcc catgtcatcg
     4081 atacggttca ggttcttgga gtacgacgtc ccgacttccc aggcgaactt gtcgcgtgtt
     4141 atgagtcgag tgttgatggc aagctcgttg ccccatccag tgaccttgcc gatgttcacc
     4201 acctggaaac cggggaatcc ggtcgaaggc ggcaacggcg agttcacgat ggcgtccgtg
     4261 atgttgcgat ggtagtgcgt gtagctgatg tccgtcgagc cgccaatgac ggtgctctcg
     4321 aagccgagct cggtctcctt gctgagctcc ggacgcagtg ctggatttcc gaatgcactc
     4381 ggcaccaggc cgggttgatc ggcggcaccg accgacggcg catacagctg tgacgcgtca
     4441 aaggcgccag gctgagtgcc cgatgcgcca tacgcagcgc gcagacgcag gctgttcaca
     4501 ccggggacat ggaaccatgg ctcctcaccg atgacccacg agccgctgaa cttcgggtag
     4561 tacgctgcct tgaactgctt gccgaatgcg ctgttgtcgt cgccacgcag cgcggcagtc
     4621 agaaagaggc gattgcgcca ggccatctcc tcctgcccga atacacccac ggttgcattc
     4681 gccgtatacg tctccgagcc ggtgcgcgtc gttccaccgc tgacggtcgt gatcggaatc
     4741 gccgggaagt tggagcccgt cgccgtgatc gtattgaggt cctgatggta gtactgcaac
     4801 ccgaccgagc tcgtgaagtc gagattgtcg ccacgatgat acttcgccga accggaatag
     4861 tcgagcgtga tgaaattgtg cagcgcacgc gcgacagact tcgagccgag cccgttgttg
     4921 cccaggaaat cgagattgcc cttgggctgg cgcgggtaga gcacccagtt gttctccgtg
     4981 ctagcgtcga gtccggcgac gagcctgttg gtgaaccacg agatcggagt gtaattcagc
     5041 gtgaggttcg acgtcgtgcg atcgacatcc gcgtggctct ccatggtcga ccattcctcc
     5101 ggcggcgacg tgttgaagcc gcgctgaccc ttgttgagcg tgagcggatt gccccagatc
     5161 agattgctga atggatcgat gtcgatcgcg ccctgcgcga gtcgcgttct gttacgcaga
     5221 tatcccatgc cggccgtgat cttgagcttg ttgccgacga gcaggtcgag gttcgcccgc
     5281 gcaccgagct tcttggccca gttccatgga acgacgccga cgtcgtcatc atagttcacc
     5341 gacgtgaagt accgcgcgag atcggagccg ccggccagac tcaggtccgt gccttcgagc
     5401 attccgttcg tgaagatagg gccgttgccg gattgcactt catgcttgta cagattgaca
     5461 ctgtcgagca gtccggtagc cgggtccttg gagtacagag tgccggctcg accctctggg
     5521 ttcgccagcc agttcgttcc cagacgctgg ctgaagttcc atgacggctt gccggttttg
     5581 ccgcgctttg tgatgacctg gatcacgccg ttcgatgcct cggtgccgta caatgtgccg
     5641 gccgcgggtc ccttgatgac ttcgatgctt tcgatgtctt cggggttgat gtcgtcgagc
     5701 gcgctcgtgc ccagcccacc gcgctgcgac gggccgcggc ttgcatcgcc gttcatgcgc
     5761 acaccgtcga tgtagatcaa cggctcgttg gtcagcgaca gactgctcac accgcgcacg
     5821 cgaagctgcg atcccgagcc aacctgaccc gatgacggca gcaccacgag acccggcgtt
     5881 cggccttcga tcagctggcc aacggtcgag accggcgcaa ccttgacaat gtcggttgcc
     5941 ttgacagtct cgatcacgtt accgactgca cgacgttgcg tcgcgcccgc tgtacctgtc
     6001 accacgacct gatcgagcag cgcggtctgg tgcatgagtg caatgtcgac cgtcgtgacg
     6061 ctaccggccg ccgcattgac ctgtctcacg acaggagcaa agcccagcag gcgcgcgcga
     6121 acggtgacgg cgccggcagt gactccggta atagtgaatc gcccattcgg tgctgtgagc
     6181 gcccccttga tcgcggttcc ggacgtaaca cctgcaggac cggcggagac ctgcactcca
     6241 gcgatcggtg catgtcccgc cgagtcgacg actgttcctg tgatagttgc agttccctgt
     6301 gacgccgcgc cggattgtgc tttcgcaaca cctccagcaa cgaccgaccc cgtaaacaac
     6361 aacatcgcga acagtagcca gcggctactt gatcttttcg acatcaaccc tcccttgggc
     6421 cagaatgaga aaaaccagcg gttgtactac gcgatactcc ggtcgatgaa gtcgcggaga
     6481 tgtccgcgcc aacgaggctc ggagcctgtt gcgctgagcg cgacgatgca gacgtcgcga
     6541 acagagtagc cgcgacaata gtcgtggcgg tgacagctca accaatgaat ctcgatgtaa
     6601 ctgatgcgct ggttgcgccg agcgtcgtca gcgtgccgtg cgacgcggct gtcgtggagt
     6661 tggcgcccat gcggcggtat ccgcagcgct cgccggtccg atctttccct ccaccgactt
     6721 catcagcgct tgcgggtcgt agatctttcc tgccttgatc acgagtcgcg gcaatctgac
     6781 ccggcgaatg tcagccagtg gattcccgcg cacgactacg aggtccgccc acttccctgc
     6841 ttcgatcgat cccagcctgt cgccaacgcc gatcgcgcgc gcactgttga tcgttgcgat
     6901 gcgaagtacg gcggcgttcg gaatgcctga cagtgagaac gacagtaatt ccctgttcac
     6961 cgcgaatggt gtgaagaatt cgccccagct cggatgatcg gtgccgagcg tgatgaggtc
     7021 gccgccacct gcgtcataga acgccttcac ttccttgcgc ttggtccagt agatgttctc
     7081 gaactgctga ttcaccggac gtggcggccg cgcggctatc accgatcgca tgtacggcgt
     7141 gaggaagcgc tcctcgtccg tgtagtacgt gtagacctcg ggatccttct tcccgtagta
     7201 accgtacgcg ctcaacgttg catcgaagta gacatgctgc gtcttgtaca gcgcggcaat
     7261 tttcctgaac gccggcgtgt cgaacgtcat gtgctcgtac gaggcgtacg cagagcgatc
     7321 cggtgtgaac gcgtcgccgc ccatgaagtg ctcgatgcga tcgattccca tcaggatcgc
     7381 gtcgcgcgga ttgaccgatt caccgaatcc ggaatcgaga tggcccgtca cggtgagccc
     7441 gtgctggtgc gcgcgctcga tcagcgcgcg cagctgatac ggctttatcc ccttggcctt
     7501 gaatccacgc actccatgct cggcccagta atcgacttcg gcgtagatcg aatcgaccga
     7561 tatgttgcga tcccaacccg gtcgtgccgt tccgaagtac ggaccggaat tcaacagccg
     7621 cgggccaggc tccaggccgc gatcgattcg aatgcgcagt gctcgcatcg agtccggatt
     7681 catttcgccc gcgggccagg tggacgtcac accgttcgcg agaaagagcg aaggatatgc
     7741 agtcgtctcg tccttgcggc cggcgttgaa cagatccatc gcatagtgcg cgtgcagatc
     7801 gaacatcccc ggaatcaccg tctccgtatc tgccagctga acgtgctcgg cgtccgccgc
     7861 agctatggag agatcgccac cgacgcgcag gaatttgccg gctcgtatga gaatgccggg
     7921 atttctgact cgttgattac ctgtcgatgc aaacagccat ccgccagtga cgagtacgtc
     7981 acgctcctga ggagcggttt gcgcggtctg cgcagatgcg agacctgccg tgacaaggag
     8041 cgagaacaac aaggcaaagc gcttcatctt cgtgtggccc cgatacggtg cttacaatgg
     8101 ctgaacaatc cagcagttcg t
//
LOCUS       DATIMD010000479         3649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3369610, whole genome shotgun sequence.
ACCESSION   DATIMD010000479 DATIMD010000000
VERSION     DATIMD010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3649
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3369610"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..427
                     /locus_tag="VLI40_10615"
     CDS             <1..427
                     /locus_tag="VLI40_10615"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HSU97674.1"
                     /translation="YISVNQSATIWDATPNEDPHYQYVFTTTFDTPSNAAAIGFNMFA
                     FDNYWISGTLNGHAITIDPIPAPPNGGNWTQIFNLTGKDGLVAGGANTLALTVQGNGR
                     TDGVLVDGYVVTTPEPSSMALLGTGLFGLVPMIRRKKQK"
     gene            584..814
                     /locus_tag="VLI40_10620"
     CDS             584..814
                     /locus_tag="VLI40_10620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97675.1"
                     /translation="MQIPRWLQIVVAVCLIVLALDATLYLAGPARDHRYSAGPEHFSV
                     VDGRTGKFCQMNGSVASVCWNPIRADTSAIKP"
     gene            1168..1797
                     /locus_tag="VLI40_10625"
     CDS             1168..1797
                     /locus_tag="VLI40_10625"
                     /inference="COORDINATES: protein motif:HMM:NF016764.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031267 - small GTPase binding [Evidence
                     IEA];
                     GO_process: GO:0006888 - endoplasmic reticulum to Golgi
                     vesicle-mediated transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Yip1 family protein"
                     /protein_id="HSU97676.1"
                     /translation="MSAVGDSLDAQGPTGLVARVKGIIMQPKSEWRVIDSESTTVSQL
                     YTGYIIPLSAIPPIASVIGLSIIGISLPLLGTYHVPFGSALTSAIAQYILGLAGVYVL
                     ALIIDALAPTFGGEKDQIQALKVAAYSSTAGWLAGIFALIPGLRILGILALYGLYLLF
                     TGLPALMKAPAEKAMGYTVVVIICAIVIFVVIGSVAGHFVSYPAMRLTQ"
     gene            1878..2111
                     /locus_tag="VLI40_10630"
     CDS             1878..2111
                     /locus_tag="VLI40_10630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97677.1"
                     /translation="MAKCEVCGNDYYLSFEVVTAGQRHVFDSFECAIHKLAPVCEHCG
                     CKIIGHGIEANGTFYCCAACARAMGANAAADHV"
     gene            2170..2967
                     /locus_tag="VLI40_10635"
     CDS             2170..2967
                     /locus_tag="VLI40_10635"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HSU97678.1"
                     /translation="MTAVRSLRRLRINFLVVVVAGAALPLAAQTTPSSQPKPADTEVW
                     GPEPRIVTPGASDAAPPSDAIVLFDGRNLDQWISARDSSAARWIVANGIVTVNKPSGD
                     IQTKRSFSNYQLHIEWRIPVGITGTSQERGNSGVFLATTPVGGYELQIMDSYNNKTYV
                     NGQAASIYKQYAPLVNAARKPGEWQTYDVVWTAPTFRSDGSLATPAYVTAFHNGVLVQ
                     NHVALKGVTKNTGYPEYKPHGPAPILLQAHGDKSAPISFRNIWVRVL"
     gene            complement(2991..>3649)
                     /locus_tag="VLI40_10640"
     CDS             complement(2991..>3649)
                     /locus_tag="VLI40_10640"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSU97679.1"
                     /translation="LILCLPASSSEERKRTLIAYGAELVLTDPERRMLAAIEQAERIR
                     DEIGAWMPNQFANPANPLIHYTTTAPELWSQLDGRVDAFVYGSGTGGTISGVGRFLKE
                     HDPAIQVIAVEPARSPVLSGGERGQHKFQGMGPGFIPANFDRSVVDRVITVWEEDAFP
                     FARRLAREEGLFVGMSSGGIAFAASQVARELGPGKRVAMIAPDSGARYLSTVLFADMD
                     "
BASE COUNT          719 a         1050 c         1159 g          721 t
ORIGIN      
        1 ctacatcagc gtcaaccagt cggcgacgat ctgggatgcg acgccgaacg aagacccgca
       61 ctatcagtac gtcttcacga cgaccttcga cacgccgagc aatgcggcag cgatcggctt
      121 caacatgttc gcgttcgaca actactggat cagcggcacg ctcaatgggc acgccatcac
      181 gatcgatcca attccagctc cgccgaacgg cggaaactgg acccagatct ttaacctgac
      241 gggcaaggat ggtcttgtcg ccggcggggc gaacactctc gcactcacgg tccagggcaa
      301 cggccgcacc gacggcgttc tcgtcgacgg ctatgtagtt acgaccccgg agccgagctc
      361 gatggctctt ctcggaacgg gcctcttcgg cctcgtgccg atgatccgcc gcaagaagca
      421 gaagtagtaa tggacggatc ggcgcactga ggtgcgctga gaaaaagggg cgtgcatcga
      481 aagatgtacg cccctttctg ctgccatccg tcagctgccc gatgagctac ccggtaagcg
      541 cgaggcactg gccaacatcg gctcatcgcc gcattttgcg gccatgcaaa tacctcgctg
      601 gttacagatc gtcgtcgccg tctgcctgat cgtccttgcg ctcgatgcca cgctctacct
      661 ggcaggtcca gcgcgcgacc accgctattc ggcgggtccc gagcacttct ccgtggtcga
      721 tggtcggacg gggaaattct gccagatgaa tggttcggtg gcttcggttt gctggaaccc
      781 gatcagggct gacacgagcg cgatcaagcc gtagccgggg taccgaccgg gcagtgtcgg
      841 ctggaatcgc tgactagaat cgcttcccgg tcgacgccca gtggcgaacc agacggttcc
      901 atgcccaacc gccgacgccg actatgactg caccggcaag aatgtcgaat accattgtgt
      961 cgctcctgtg ggctccgggc gccggtggtc gacgccgctc tccttaatta tgtgtcagtt
     1021 tcaaggagag aagcgttgcc tcgcacgggt gacgagacgg gtgacgagtc agtggctgac
     1081 ggatcgcctg tagcgcgacc ttgcgcggcg tgtcatggcc ggtagaatct ccctagctac
     1141 ttccaatcaa tcaaccgggg ggattcaatg tccgctgtcg gagattcgct ggacgctcag
     1201 ggaccgactg ggctcgtcgc gcgtgtgaag ggcatcatca tgcagccgaa gtcggagtgg
     1261 cgggtgatag acagtgagtc aacgacggtg agccagctgt acactggcta catcataccg
     1321 ctgtccgcga ttccgccgat cgcatctgtg atcgggttga gcatcatcgg catcagtctt
     1381 ccgttgcttg gcacgtacca cgttccattc ggatctgcgc tgacgagcgc gatcgcacaa
     1441 tacatcctcg ggctggctgg tgtgtatgtg ctcgcgctca taatcgacgc tctcgcgccg
     1501 acgttcggtg gagagaagga ccagatccag gcattgaagg tcgcggcgta ttcgagcacg
     1561 gcgggctggc tggccggaat cttcgcgctc atcccgggcc ttcgcattct cggcatactc
     1621 gcgttgtacg gtctgtatct tctgttcacg ggtctcccgg cgctgatgaa ggcacctgcg
     1681 gaaaaggcga tggggtacac tgtcgtggtg atcatctgcg cgatcgtgat cttcgtcgtg
     1741 ataggatcgg ttgccggtca tttcgtgtcg tacccggcga tgagactcac gcagtagcgc
     1801 aggtggtagt gtaagccaat gagattcgtg cacggaaaat gcgctgccga gggacgtact
     1861 ccacccgagg cggcacaatg gcgaaatgcg aagtgtgcgg caatgattat tacctgtcgt
     1921 tcgaagtggt gacggcggga cagcgacacg tgttcgatag cttcgagtgc gcgattcaca
     1981 agctcgcgcc ggtttgcgag cattgcggtt gcaagatcat cgggcacggc atcgaggcta
     2041 acggcacatt ttactgctgc gcggcgtgtg cacgcgcgat gggcgcgaac gcggcggccg
     2101 atcacgtgtg acggatcggc gcgtcgaatc gggccgtggt gttttcatac catcaacgtg
     2161 gaatttttga tgacagctgt tcgatcgttg cgccggttac gaatcaattt ccttgtggtt
     2221 gtagtcgccg gtgctgcgct gccgctcgct gcgcagacga cgccatcgtc tcaaccgaag
     2281 ccggccgaca cggaagtgtg gggtccggag ccgaggatcg tgacaccggg ggcgtcggat
     2341 gcggcgccgc cgtcagacgc aattgtgctg ttcgatggca ggaatctcga tcagtggatc
     2401 agtgcacgcg acagctcggc ggccaggtgg atcgtcgcga acgggatcgt cactgtgaac
     2461 aagccatcgg gcgatatcca gaccaagcgg agtttcagta attaccaact gcacatcgaa
     2521 tggcgcatac cagttggaat tacaggcacc agtcaggagc gcggcaacag cggtgtcttt
     2581 ctcgccacca ctccggtggg cggatacgag ctacagatca tggactcgta caacaacaag
     2641 acctacgtga atgggcaggc ggcgagcatc tacaagcaat acgcgccgtt ggtgaacgcg
     2701 gcgcggaaac ccggcgagtg gcagacgtac gatgtggtct ggacggcacc gacgttcagg
     2761 agtgatggat cgctcgctac gccggcttat gtaacagcgt ttcataacgg cgtgctggtg
     2821 cagaatcacg ttgcgctcaa gggcgtgacg aagaacacgg ggtatccgga gtacaagccg
     2881 catgggcctg cgcccattct gctgcaggcg cacggcgaca agagcgcgcc gatcagcttc
     2941 aggaatatct gggtgcgggt gttgtagaag gaattgtccg ggatgactgg tcagtccata
     3001 tccgcgaaca ggacagtgga caggtagcgc gctccggaat cgggagcaat cattgctaca
     3061 cgcttgccgg ggccgagctc gcgcgcgact tgcgaggccg cgaaggcgat tccgccggac
     3121 gacatgccta cgaacaggcc ttcttcgcgc gcgaggcgtc gcgcaaatgg gaatgcgtcc
     3181 tcttcccaaa cggtgattac gcgatccact acggagcgat cgaagttggc cgggatgaaa
     3241 cccgggccca tcccctgaaa tttgtgctga ccgcgctcgc cgcctgagag caccggagag
     3301 cgtgcgggct cgactgctat cacctgtatc gccggatcgt gctccttgag aaagcgaccg
     3361 acgccactga tggttcctcc ggttccagag ccgtacacga acgcatcgac ccgaccgtcg
     3421 agttgcgacc acaattccgg cgctgttgtg gtgtagtgga tcagcggatt ggcaggattc
     3481 gcgaattgat ttggcatcca cgcgccgatc tcgtcgcgga tgcgttccgc ttgctcgatt
     3541 gccgcaagca tgcggcgctc gggatcggtg agaacgagct cggcgccgta cgcaatcaac
     3601 gtgcgcttgc gctcctcgct cgacgatgcg gggaggcaga gtatgagtc
//
LOCUS       DATIMD010000480         3182 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5683242, whole genome shotgun sequence.
ACCESSION   DATIMD010000480 DATIMD010000000
VERSION     DATIMD010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5683242"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1659)
                     /gene="ftsH"
                     /locus_tag="VLI40_10645"
     CDS             complement(<1..1659)
                     /gene="ftsH"
                     /locus_tag="VLI40_10645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HSU97680.1"
                     /translation="MPLPRPSGNGPKKPFSWAKFSKTLALWVLLLLIPVVFISYSGGG
                     ADSAPTISYTQYGQELDRDNISKVTVQGGRAIVGEFKEPVAVAGSKPVKKFNTRLPVD
                     NSAEEVARLRNHNVQIDAEDARTSPLGFIFTFLPYLLLIGFWIFLFRQMQSGGNRAFS
                     FGKSKAKLLTADSPKVTFADVAGADEAKVELQEIIEFLKDPAKFTKLGGRLPKGCLLV
                     GPPGTGKTLLARAVAGEAARPFFSMSGSDFVEMFVGVGASRVRDLFEQGKAHAPCIIF
                     IDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNDGVILIAATNRPDVLDPAL
                     LRPGRFDRQIVVDAPDLRGREGILRVHMRNKPVADDVDIFTLARGTPGMSGADLANLM
                     NEGALLAARRNHDKVYMIDLEDAKDKVMLGAERKSMVMKDAERKLTAYHEGGHAICAI
                     KVKGNDPLHKVTIVPRGRALGLAFTLPEDDRVSITREQLKATLVKAYGGRAAEELVFG
                     KEHVTTGAASDIQQATNIARRYVSQWGLSDVVGPILVGDDEQELF"
     gene            complement(1660..2205)
                     /gene="hpt"
                     /locus_tag="VLI40_10650"
     CDS             complement(1660..2205)
                     /gene="hpt"
                     /locus_tag="VLI40_10650"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006166 - purine ribonucleoside salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HSU97681.1"
                     /translation="MLDPDPRLLGRKVSRIAFDEPTIAARVKELGEEITREYSDGDLL
                     VLGLLKGSFIFLSDLVRQIVRPLQVDFLVAASYGESMVSSGNVRLLYDPETALEGKHI
                     LLVEDIIDSGRTLSVLMDLLAVRQPKSLSICALLHKRIATQLRYDARFIGFDAPHEFL
                     VGYGLDHAEDFRHLPYIASLE"
     gene            complement(2198..3118)
                     /gene="tilS"
                     /locus_tag="VLI40_10655"
     CDS             complement(2198..3118)
                     /gene="tilS"
                     /locus_tag="VLI40_10655"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR02432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HSU97682.1"
                     /translation="MTRIRQRVAALGPGNWLLAVSGGMDSMILLDAAAETLDHDTLAV
                     ATFDHGTGPAAREAAALVAERALDLGIGCVCGRAEGAGGSESEWRAARWSFLNDVASR
                     LGATVVTAHTLDDQVETVFIRALRGAGPRGLAGLLADSPVARPLLETTRAEIEQYAQG
                     DRTPYVTDPSNTDRRHLRNRVRLDILPALERASPGFSTSLLEIAEKAAAWRARMEAVA
                     LTFHVMSDSPESHSFERRQLREIPEASLACLWPALCARTGIVLDRRGTERLAAFTIEG
                     ETGQQIQLSGGVRVLMDRRTITFRQTAPNA"
BASE COUNT          608 a          985 c         1002 g          587 t
ORIGIN      
        1 gaacagctcc tgctcgtcat cgccgacgag gatcggaccg acaacgtcgg acagtcccca
       61 ctgcgagacg tatctgcgag cgatgttggt cgcctgctga atgtcgctcg ctgcaccggt
      121 cgtgacgtgc tcctttccga atacgagctc ctcggctgca cgtccgccgt acgccttgac
      181 gagcgtcgcc ttcagctgct cccgggtgat cgacacgcga tcgtcctctg gaagcgtgaa
      241 tgcgagaccg agcgcacggc cgcgcggtac gatcgtgacc ttgtgaaggg gatcgttgcc
      301 cttcaccttg atcgcgcaga tcgcatggcc accctcgtgg tacgccgtca gcttgcgctc
      361 ggcatccttc atcaccatcg acttgcgctc ggcgccgagc atcaccttgt ccttggcgtc
      421 ttcgaggtcg atcatgtaca ccttgtcatg attacggcgt gcagcgagca gcgcgccttc
      481 gttcatgaga ttggcaaggt cggcaccgga catgcccgga gttccacgcg cgagcgtgaa
      541 gatgtcgacg tcgtcggcaa ccggcttgtt gcgcatgtga acgcggagga ttccctcgcg
      601 gccacgcaga tccggcgcat cgacgacgat ctgtcgatcg aagcggcccg gacgaaggag
      661 cgcgggatcg agcacgtcgg gacggttggt cgcggcgatg aggatcacgc cgtcgttgga
      721 ctcgaagccg tccatctcga cgagcagctg attgagtgtc tgctcgcgct catcgtgacc
      781 gccgccaagt ccggcgccac gatggcgtcc gacggcgtcg atctcgtcga tgaagatgat
      841 gcacggcgca tgagccttgc cctgctcgaa gaggtcgcgc acgcggcttg cgccgacgcc
      901 gacgaacatc tcgacgaagt cggagcctga catcgagaag aacggacgtg cagcctcacc
      961 agcaacggcg cgggcgagca acgtcttgcc tgtaccgggc ggtccgacga gcaggcagcc
     1021 cttgggcagg cgtccgccca gcttcgtgaa tttcgccggg tccttgagga actcgatgat
     1081 ctcctgaagc tccaccttgg cctcgtccgc tcctgcgaca tcggcgaaag tgaccttggg
     1141 cgaatccgcg gtgagcagct tggccttgga ttttccgaac gagaacgcgc ggttcccgcc
     1201 cgactgcatc tgccggaaga ggaatatcca gaatccgatc agcagcagat acgggagaaa
     1261 cgtgaagatg aagccgagcg gcgacgtgcg tgcgtcttcg gcgtcgatct ggacgttgtg
     1321 attgcggaga cgggcgactt cttcggcaga attgtcgacc ggcagccgtg tgttgaactt
     1381 cttgactggc ttgctgccag ccacggccac gggttccttg aactcgccaa cgatcgcacg
     1441 accaccctga acggtgacct tgctgatgtt gtcgcggtca agctcctggc cgtactgcgt
     1501 atatgaaatg gtcggcgcgg aatccgctcc gccgcccgag tagctgatga acactacggg
     1561 gatgaggagc aggagcaccc agagagccag agtcttggaa aacttggccc agctgaaggg
     1621 ctttttgggg ccgttgccgg atggacgagg gagcggcatc tattctaaac tcgcgatata
     1681 aggcagatgt ctgaaatctt ctgcatggtc gaggccgtat ccgaccagga actcatgcgg
     1741 ggcatcaaaa ccgatgaaac gggcgtcgta gcggagctgc gtagcgatcc gcttgtgcaa
     1801 caacgcgcag atcgatagcg atttgggctg gcggaccgcc agcaggtcca tcaggacgct
     1861 cagggtccgt ccggagtcaa taatgtcttc aacgagaagg atgtgcttcc cttccagagc
     1921 ggtctcgggg tcgtacagca atcgtacgtt accgctcgaa accatggact cgccgtagct
     1981 tgcggctacg aggaaatcca cttgcagcgg gcgaacgatc tggcgaacca gatcgctcag
     2041 aaatatgaaa ctgcctttca aaaggccaag tacgaggaga tcaccgtcgg aatactccct
     2101 ggtaatctcc tctcccaact ccttcactct ggcagcgatg gtcggctcat cgaatgcgat
     2161 gcgcgagacc ttcctgccca gaagccgggg atccgggtca agcattcggc gcggtctgac
     2221 ggaacgtgat cgtcctgcgg tccatgagga ccctgacgcc gccggatagc tgaatctgct
     2281 ggcccgtttc accctctata gtaaacgccg cgagcctctc ggttccgcgc cggtcgagaa
     2341 cgattcctgt gcgggcacag agagccggcc acaggcaggc gagcgatgcc tcaggaattt
     2401 ctcttaattg acgtctttcg aacgagtgac tttcggggga atcgctcatc acatgaaaag
     2461 taagtgcaac cgcctccatc cgcgcccgcc aggcggcagc tttttcagcg atctcgagca
     2521 gagatgtcga aaagccgggc gacgcgcgct cgagcgccgg caggatatcc aggcggaccc
     2581 ggttgcgaag gtgccgccgg tcagtgttgg agggatccgt cacataggga gttcggtcgc
     2641 cctgcgcgta ttgctcgatc tccgcccggg tggtctcgag aagcggccgt gcaacgggcg
     2701 aatccgccag caggcccgcg aggccgcgag ggccggcacc gcggagcgcc cggatgaaga
     2761 cggtctcgac ctgatcgtcc agcgtgtgcg cggtgacgac ggtggcaccg agtctcgacg
     2821 ccacatcatt gagaaaagac caccgcgccg cccgccattc cgattccgag ccgcctgcac
     2881 cctccgcacg cccgcagacg catccgatcc cgaggtccag tgcacgctcg gcgacgagcg
     2941 cggcggcctc acgcgcggcg ggcccggtgc catgatcgaa cgtcgcgact gcgagcgtat
     3001 cgtggtcgag agtctccgcc gccgcgtcca acaggatcat tgaatccatc ccgcccgaga
     3061 cggccagcag ccagttgccg ggcccgaggg ccgcgactcg ctggcggatt cgtgtcacgg
     3121 tgtcgtgaat ggtgcccatg gtgttaagtt accggctcgc cgtcgtgcgg cgaacattca
     3181 cc
//
LOCUS       DATIMD010000481         2833 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_194478, whole genome shotgun sequence.
ACCESSION   DATIMD010000481 DATIMD010000000
VERSION     DATIMD010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2833
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194478"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2591
                     /locus_tag="VLI40_10660"
     CDS             <1..2591
                     /locus_tag="VLI40_10660"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU97683.1"
                     /translation="EDEVEAMSDAVTRLTTVLADRYAIERELGAGGMATVYLAEDLKH
                     HRKVAIKVLHAELSAILGPERFLKEIELTANLQHPHILPLFDSGSAGGLLYYVMPYVD
                     GETLRGRLNRDKQLSIADAVRIASEAADALEYAHKRGVVHRDIKPENILLHDGHALVA
                     DFGIALAVQQAGGERMTQTGLSLGTPQYMSPEQAMGERNIDARTDIYALGAVTYEMLA
                     GEPPFSGPTAQAIVAKVMTEDPRSLTAQRRSVPEYVDAAVETALQKLPADRFASAAAF
                     GAALSGTGDQVRSHTRTRGGSRRRYMFAMIAGASAVLIAACAAAFLAGSRRRTDAEHV
                     AYHAVTFENQVIFTARFAADGRTIVFDAARQANVPAVYVIRPDYPEARPLGLEDTHLL
                     AASSHGDLAVLTRAHYISHRVFVGTLARVPLEGGTPREMLDSVRDADWSPDGSALAII
                     HEVGGRDRLEYPIGTVLYDAAGYLSDVRVSPDGERVAFMEHPARYDDRGSVDVVDRTR
                     RRTVIAQGFSGEQGVAWSLDGRSVLFSSGEGLGYQVREATLDGGSSQRLATPEAMIIQ
                     DVSRGGSWLAASYAESRISRVRAPGAAGETDVSWLDGSVAAALSHDGRLVTLADISTI
                     AGTNYASVLRRTDGSPAVRLGEGWPAGFTRDGQWVISMVPTTPAQLRLYPVGTGEARR
                     VDLGAFTTLTAAEVWGPGEDSILACGTMAAHTPSCYFRTTADQKWRVVTAPLTSVEVS
                     PSFVSPDGHHFLGRDATGANIVSDLRTDSTRALHGLLAGDEVIRWSPDGRSLWVWRAD
                     TLPIIVDRIDVATGQRTLLETLVPPGDQGLRHIVAVTLADDPRVYAYGAGRVISQLFV
                     IDGARP"
BASE COUNT          478 a          887 c          954 g          514 t
ORIGIN      
        1 ctgaagacga agttgaagca atgagtgacg ctgtcacgcg gctgaccacg gtgctcgccg
       61 acaggtacgc catcgagcgc gagcttggcg cgggtggcat ggcgacggtg tatctcgccg
      121 aagatctgaa gcatcatcgc aaggtcgcga tcaaggtgct gcatgcggaa ctctccgcga
      181 tcctcgggcc tgagcgtttt ctcaaggaga tcgaactcac cgcgaatctg cagcatccac
      241 atattcttcc gctgttcgac tcgggatcgg ctggcgggct gctgtactat gtgatgccgt
      301 acgtcgatgg cgagacactg cgcgggcgct tgaaccgaga caagcaactg tccattgccg
      361 acgcagtcag gatcgcgagc gaggccgccg acgcgctcga gtacgcgcac aagcgcggcg
      421 ttgtgcaccg cgacatcaag cccgagaata ttctgctgca cgatgggcat gcactcgtcg
      481 ctgattttgg aatcgcgctc gcagtgcaac aggccggtgg tgagcggatg actcagactg
      541 gcctgtcgct tggaactccg cagtacatgt ccccggaaca ggcgatgggc gagcgcaaca
      601 tcgatgcgcg aacagacatc tacgccttgg gtgccgttac gtacgagatg ctcgccggcg
      661 agccgccgtt ctccggacct accgcgcagg cgatcgtcgc gaaggtgatg acagaggacc
      721 cgcgctcact cacggcgcag cgcaggagtg tgccggagta cgtcgacgcc gcggtcgaga
      781 cggcgctgca gaagcttccg gccgaccgct tcgcgagcgc cgccgcattc ggtgctgcgc
      841 tgtccggcac gggtgatcag gtgcgctcgc atactcgcac acgtggtggc agccggcgcc
      901 gctacatgtt cgcgatgatc gcgggcgcat ccgcagtgct catcgcggcc tgcgctgctg
      961 cattcctcgc tggaagccgc cggcgcaccg acgcagagca cgtcgcgtat catgcagtga
     1021 cgttcgagaa ccaggtgatc ttcacggccc ggttcgctgc cgacggccgc accatcgtct
     1081 tcgacgcggc gcggcaggcg aacgtaccag cggtgtacgt gatacggccg gactatcccg
     1141 aggcgcgacc gctcggtctc gaagacacgc acctgctcgc cgcttcgtcg cacggcgacc
     1201 tcgctgtgct gacgcgggcg cattatatca gccaccgtgt cttcgtcggg acactggcgc
     1261 gcgttccgct cgagggcggc acgccgcggg agatgctcga cagcgtgcgc gatgctgatt
     1321 ggtcgccaga tggctccgcg ctggccatca ttcatgaggt cggcggacgc gatcgcctcg
     1381 agtatccgat cggcaccgtg ctgtatgatg ctgctggtta cctgagcgac gttcgagtct
     1441 cgcccgacgg agagcgggtc gcgttcatgg agcaccccgc acggtatgac gaccgcggtt
     1501 ccgtggacgt ggtggaccgc acgcgtcgcc gcactgttat cgcacagggt ttttccggag
     1561 agcagggtgt ggcatggtcg ctcgatggtc gctcggtcct cttctcaagt ggcgaggggc
     1621 ttggctatca ggtacgagag gcgacactgg acggcgggtc cagccagaga ctcgccacac
     1681 cggaggcgat gataattcag gatgtgtcgc gcggcggaag ctggctcgct gcgagctacg
     1741 ccgaaagccg catctcgcgc gtccgagcgc cgggcgcggc cggtgagacc gacgtctcct
     1801 ggctggacgg atccgtcgcg gccgctctat cgcacgatgg ccgccttgtt acactggcgg
     1861 acatcagcac gatcgccggc acaaactacg cgagcgtgtt gagacggaca gatggctctc
     1921 ccgcggtgcg gttgggcgag ggatggcccg ccggattcac gcgagacggt cagtgggtga
     1981 tctccatggt tccaacgacg cccgcgcaac tgcggctgta tccggtcggt actggggagg
     2041 cgcgacgcgt cgacctcggc gcgttcacga cgctcaccgc cgcggaggtg tgggggccag
     2101 gagaggattc gatcctggca tgcggcacga tggctgccca cacgccgtcg tgttatttcc
     2161 gcacgactgc cgaccagaaa tggcgcgttg tcaccgcccc gcttaccagc gtcgaggtga
     2221 gtccgagctt cgtgtcaccg gacgggcatc actttctggg cagggacgcc acaggcgcga
     2281 acatcgtctc cgacctgcgc accgactcca cgcgcgcatt gcacggattg ctcgctggag
     2341 atgaggtgat tcgttggagt ccggacggca ggtccctgtg ggtctggcgc gccgacaccc
     2401 ttccgatcat cgtcgaccgg atcgatgtgg cgaccgggca gcgcacactg ctcgagacat
     2461 tggttcctcc gggtgatcag ggactccggc acatcgttgc ggtcacgctc gcggacgatc
     2521 cgcgcgtgta cgcctacggc gcgggccggg tgatttccca actgttcgta atcgatgggg
     2581 cacggccata gcgcgaggca attggacaat cggccgggga gccggtacgt ttgctcggct
     2641 gtgtcggtga cagctgtccc gtaacgagtg cagctacgcg ccgcaggctc accgccggag
     2701 tccttctcca tttccattgc tgatttctct gttatgagtc gtcgatgacg gggatcgacg
     2761 aacgactgcg caccgccctc gcagatcgtt accgcatcga gcgtgagctt ggcgcgggcg
     2821 gcatggcaac ggt
//
LOCUS       DATIMD010000482         4917 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_485661, whole genome shotgun sequence.
ACCESSION   DATIMD010000482 DATIMD010000000
VERSION     DATIMD010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4917
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485661"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..434
                     /locus_tag="VLI40_10665"
     CDS             <1..434
                     /locus_tag="VLI40_10665"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HSU97684.1"
                     /translation="NKPTESRAFVPGSWGAELSDALGPDSGHGPEKLFEKDVFGAFTG
                     TELESWLRANAVTEVMIVGFYTHMCVSTSAREALVRGFDVWIDADATGAADLDDEVLG
                     RQSAAEVRRSALLHLAHMGARMTRPDYTSLDESPATTDHVA"
     gene            431..1081
                     /locus_tag="VLI40_10670"
     CDS             431..1081
                     /locus_tag="VLI40_10670"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HSU97685.1"
                     /translation="MTDGRSARARVVSINVGAVREVEWRGRLVRTAIWKSPVVGRPVA
                     LRGVNLEGDDQADRTVHGGPDKAVYAYSVEDYRYWSEREGTDMHAATFGENLTVEGVD
                     LRRVIVGERWRIGSAELEVAQPRLPCFKLGIRMDDAAFPKRFQSAGRLGAYFRIVREG
                     EVSANAEVTVTVRPTHGVTLGSMIDALDDRTGRPSLLAAGYLPEFWRRVASGEMDE"
     gene            complement(1087..2109)
                     /locus_tag="VLI40_10675"
     CDS             complement(1087..2109)
                     /locus_tag="VLI40_10675"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSU97686.1"
                     /translation="MTTQPGGAITTSTGMERDSYIGTNGWKSAVELRQLRVFLSVVEY
                     GSVSAAAIALGLAQSTVSESLAALDRAVGAPTVLRKRGAHHATLTLAGEAILPHARRM
                     LQQLDAAHCSIAAATRDATATVGITANESVSTYLLAPALGLLRKRWPNTRFSVTIAAC
                     ATTRDDVTAGRCDLGVLLEGRVDNRGDDCVSDARETAHTMVLATEIPLVIFCGPKHAL
                     VRDVRRASVERDEASAFPVFTTDGAGDFHELVRRYFTGDGMPGPRLEAAGSIDGVKRA
                     VAGDPDALGILPGYALSEDLRLGRARVLELNPAPPTVRLVALLPYAQHDRHPALTDLL
                     GVLRDS"
     gene            2234..2989
                     /locus_tag="VLI40_10680"
     CDS             2234..2989
                     /locus_tag="VLI40_10680"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrmJ/YjtD family RNA methyltransferase"
                     /protein_id="HSU97687.1"
                     /translation="MPETVLSRVVVVLYEPQDPVNIGGTVRAMKNMGASELRLVRPCE
                     YTDVRLAGIAHGTADIIEGIRHFDTLDDALADCVKVAAFTARRRAAKRLLTDARAAAP
                     IIAAAAQEGKVALLFGREDSGLPNEAMDRGHLVVTISTTEHSSLNLAQAILLALYELH
                     LVAADATRYIAPPKRDAPAALAAEYELMFSDAEKALEQVQFFKTRHHERIMRSIRSLA
                     FRASPDKREIALLRAMSIEVLRTIDRIKRGLAS"
     gene            3080..3613
                     /locus_tag="VLI40_10685"
     CDS             3080..3613
                     /locus_tag="VLI40_10685"
                     /inference="COORDINATES: protein motif:HMM:NF025875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HSU97688.1"
                     /translation="MALRRKWLTVSGFIAIAAAATMLSAFSGASTSQGFSPEQPIHFP
                     HPLHVQTLKMNCLYCHFSANKSPDPGLPAVATCMGCHALVATNKPEIKKLAAYWNKKQ
                     PVPWVRMHKVPEYVHFPHMSHVNAGVSCQTCHGPIQNMKQVYQYSSLNMGWCVSCHIG
                     QSNPPFKARYDCAACHY"
     gene            3621..>4917
                     /locus_tag="VLI40_10690"
     CDS             3621..>4917
                     /locus_tag="VLI40_10690"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HSU97689.1"
                     /translation="MSTETESKGIKRRDFLKVVGGGAAIAASIGCESDRVEKLIPYLV
                     SPDNTVPGVSTYYATTCRGCAAGCGVIAETRDGRTTKLEGNPAHPVNRGALCSTGQAE
                     VQALYNPDRYRSPMIRKNGKLVAAKWDEALKLFAQKLGETRSRGGAANAVFINQHESG
                     SFPAFLDQWLTDFGMPAHVSYDAGVDTEAIAAHTAAYGVAWPRFDFNAATLVISFGAD
                     FLDGWGPSVPQQLDWADARAKLVGAPRLVAVGARRSLTGLNADTWLDCKPGTEVMIAR
                     ALSGELPVAQAAQQSGVDEKRLQSLVDEYRAAKPSLVLAGGHVASSAELFAAVAALNR
                     ASGAVGTTIRPDQAFLGYEGIAPAAQLRAIGDRMNSGAVSLLMIRGANPAYTMPRSTG
                     FAAAMKKVPFKVSFASIMDDTSEMCDLILPDHHSLEQWGD"
BASE COUNT          954 a         1475 c         1570 g          918 t
ORIGIN      
        1 ataacaagcc gaccgagtcg cgggcgttcg ttcccggttc gtggggcgcc gagctttcgg
       61 acgcgctcgg gcctgactca gggcacgggc ccgagaagtt gttcgagaag gacgtcttcg
      121 gtgcgttcac gggaaccgag ctggaatcat ggctgagagc caacgcggtc accgaagtga
      181 tgatcgttgg cttctacacc cacatgtgcg tgtcgacttc tgcgcgcgaa gcgctggttc
      241 gggggttcga tgtatggatc gacgcagacg ccaccggcgc cgcggatctg gacgatgaag
      301 tgctaggtcg tcagagtgct gcggaagtgc gcaggtcggc gctactgcac ctggcacata
      361 tgggcgcgag aatgacgcgt ccggattaca cttcgctgga tgaatcccct gcgacgacag
      421 atcatgttgc gtgactgacg gtcggtcggc tcgcgcgcgt gtggtttcga tcaacgttgg
      481 cgccgttcgc gaagtcgagt ggcgtggcag gctcgtccgc accgcaatct ggaagagtcc
      541 agtggtgggt cgaccggttg ctcttcgtgg cgtcaatctc gagggtgacg accaggcgga
      601 caggacggtg cacggagggc cggacaaggc ggtgtacgcg tactcggtgg aagactaccg
      661 gtactggagc gagcgcgaag gaaccgacat gcacgcggca acattcggtg aaaaccttac
      721 cgtcgagggc gtcgatctgc gtcgcgtgat cgtaggagag cgctggcgaa tcggtagtgc
      781 cgaattggaa gtcgcacagc cgcgcctgcc atgtttcaag ctcggcattc gaatggacga
      841 cgcggcattc ccaaagcgtt ttcagtccgc cggtcggctc ggcgcatact ttcgcatcgt
      901 gcgcgagggt gaggtgagtg cgaatgcaga agtgactgtc acagtgcgac caacgcatgg
      961 cgtgaccctt ggctccatga tcgatgcgct cgacgatcgg accgggcgac ccagtctgct
     1021 cgccgccgga tacttaccgg aattctggcg gcgcgttgcg agcggcgaga tggatgagtg
     1081 acggcatcat gagtcgcgca gcacgccgag cagatcggtg agcgcgggat gcctgtcgtg
     1141 ttgcgcatac gggagcaatg caacgagtcg gaccgtgggc ggagcaggat tcaactcgag
     1201 cacgcgcgcg cgtccgaggc gaagatcttc tgacagcgcg taaccgggca aaatgccgag
     1261 agcgtccgga tcgccagcga cggcgcgctt gacgccatct atgcttcctg ccgcttcgag
     1321 tctcggcccc ggcatgccgt cgccggtgaa gtaacggcga acgagctcat gaaaatcgcc
     1381 agcaccatcg gtcgtgaaaa ccgggaatgc gcttgcttca tctcgctcca ctgacgctcg
     1441 ccggacgtcg cgcaccagcg catgcttcgg tccgcagaaa atcaccaacg gaatttcagt
     1501 cgcgagcacc attgtgtgtg cagtctctcg cgcgtccgat acgcaatcat cgccgcggtt
     1561 atcgacacgg ccttccagca gcacgccgag atcgcatcgg cctgcggtga catcgtctcg
     1621 tgtagttgca cacgcagcta tagtgaccga aaagcgtgtg ttgggccagc gcttgcggag
     1681 caagccgagc gccggcgcca gaaggtaggt gctgaccgac tcgttggcgg taattccgac
     1741 ggtcgcggtt gcgtcacgcg tcgccgccgc gatactgcag tgagccgcat ccaactgctg
     1801 cagcatgcga cgagcgtgcg gaaggatcgc ctcaccagcg agcgtgagtg ttgcatggtg
     1861 cgctccgcgc tttcgcagca ctgtcggagc cccgacggcg cgatcgagtg cggcgagcga
     1921 ttcggaaaca gtcgattggg cgagcccgag cgcgatcgcc gcggcgctta cacttccgta
     1981 ctcgacgacg gaaagaaaaa ctcgcagctg gcgtagctcg accgccgact tccaaccgtt
     2041 ggtcccgatg taggagtcgc gctccatccc cgtcgatgtc gtaatcgctc ctcccggctg
     2101 agttgtcact attcagtcac tgtccccggg aaaatatcga taattccgat attcacaatg
     2161 acagaggtgt ttcgacggat gaacatgcat gagagcggta tcactccggg gcggactccg
     2221 agtaccttac gccgtgccgg aaaccgtcct ctcacgcgtt gtcgtcgtcc tgtatgagcc
     2281 gcaagatccc gtcaacatcg gcgggacggt gcgtgccatg aagaacatgg gggcaagcga
     2341 gctgcggctg gtgcgcccgt gcgagtatac ggacgtaagg cttgccggta tagcccacgg
     2401 tacggccgac atcatcgagg ggatcagaca tttcgataca ctcgatgacg ctctcgctga
     2461 ctgcgtcaag gtcgcggcct tcactgctcg gcgccgtgcg gccaaacggc tgcttacgga
     2521 cgcgcgcgcg gcggcgccga tcatcgctgc tgcggctcag gagggaaagg tcgccctgtt
     2581 gttcggtcga gaggacagcg ggctgccgaa cgaagcgatg gatcgtggcc atctcgtcgt
     2641 gacgatctct actacagagc acagctctct caacctggcg caggcgattc ttcttgcgct
     2701 gtacgagctg catctggtgg cagcggacgc cacccgctac atcgctccgc ccaagcggga
     2761 cgcgccggcg gcgctggccg cggaatacga gctgatgttc agcgacgcgg agaaggcgct
     2821 ggagcaggtc cagttcttca agacgcgtca ccatgaacgg atcatgcggt ctataaggtc
     2881 gctggctttc cgtgcgtcac cggacaagcg cgagattgcg ctgctgcgcg ccatgtcgat
     2941 cgaggttttg cgcaccatcg accgcatcaa gcgcggcctt gcatcatagg cccgcgcggg
     3001 tgattattgg acgacaactt ggcttgtgaa cattttcaca tagccgaacg tttaactcgc
     3061 ctttaaccac aattcgcgga tggcgttgcg aaggaagtgg ctcacggtat cgggattcat
     3121 cgcgatagcc gcagcagcca ctatgctctc ggcattcagc ggcgcttcga cgtcgcaggg
     3181 cttcagccct gaacagccga ttcatttccc acatcccctg cacgtacaga cgctgaagat
     3241 gaactgcctg tactgccact tttccgcgaa caaatcgcca gatccgggac tgccagccgt
     3301 tgccacgtgc atgggctgtc acgcgctcgt tgccacgaac aagcctgaaa tcaagaagct
     3361 cgcggcttac tggaacaaga agcagccagt gccatgggtt cggatgcaca aggttccgga
     3421 atacgtccat ttcccgcaca tgagccacgt gaacgcaggt gtttcatgcc agacctgcca
     3481 cgggccgatt cagaacatga agcaggttta ccagtattcc tcactgaaca tgggttggtg
     3541 tgtcagctgc cacatcggac agtcgaaccc gcctttcaag gcgcgctacg actgcgccgc
     3601 ctgccactac tgagccccgc atgagcaccg aaacagaatc gaaggggatc aagcgcagag
     3661 actttcttaa ggtggtcggc ggtggtgctg cgatcgcggc atccatcggc tgcgaatctg
     3721 acagagtcga gaagctcatc ccgtacctgg tatctccgga caacacagtc ccgggggttt
     3781 ccacttatta cgcaacgacg tgcagagggt gcgcggccgg ttgcggcgtg atcgcggaaa
     3841 cgcgagacgg tcgcaccacc aagctcgaag ggaatccggc gcatcccgtg aaccgcggtg
     3901 cgctttgctc cacgggccag gccgaagtgc aggcgctgta caatcccgat cgctaccgct
     3961 cgccaatgat tcgcaagaat ggcaagctgg tcgcggccaa gtgggacgag gcgctcaagc
     4021 tgttcgcgca gaagctcggc gagacacgct cgcgcggtgg ggctgcgaac gccgtattca
     4081 tcaatcagca cgagtccggt tcgttcccgg cattcctgga ccagtggctc actgacttcg
     4141 gcatgcccgc gcacgtcagc tacgacgcag gcgtcgacac cgaagcgatc gcggcccaca
     4201 ccgccgcata cggcgttgca tggccgcgtt tcgatttcaa tgcagcgacg ctggtgatct
     4261 cgttcggcgc cgacttcctg gatggctggg gaccgtcggt accgcaacaa ctcgactggg
     4321 ccgatgcgcg cgccaagctg gtcggtgcgc cgcgactggt ggcggttggc gcacggcgct
     4381 cgctcacggg tctcaacgcg gacacgtggc tggactgcaa gccaggcacg gaagtgatga
     4441 tcgcacgtgc actctcgggc gagctgccgg tagcgcaggc tgcgcagcag agcggcgtcg
     4501 atgaaaaacg cctgcaatcg ctcgtcgatg aataccgcgc ggccaagccg tcactcgtgc
     4561 tcgccggcgg acacgtcgcc agctctgccg agctgttcgc agctgtcgcg gcactcaatc
     4621 gcgcgagtgg tgcggtcggt acgactattc gccccgatca ggcatttctc ggttacgaag
     4681 gaatcgcacc cgcggcccag ctgcgcgcga tcggcgaccg gatgaattcc ggtgccgttt
     4741 cgttgctcat gattcgcggc gcgaatccgg catacacaat gcccaggagc acgggctttg
     4801 ctgccgcaat gaagaaggtt ccgttcaagg tgtcgttcgc cagcatcatg gacgacacga
     4861 gcgagatgtg tgacctgatt cttccggatc atcattcgct cgagcagtgg ggcgatg
//
LOCUS       DATIMD010000483         5788 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1933231, whole genome shotgun sequence.
ACCESSION   DATIMD010000483 DATIMD010000000
VERSION     DATIMD010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5788
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1933231"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..304
                     /locus_tag="VLI40_10695"
     CDS             <1..304
                     /locus_tag="VLI40_10695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU97690.1"
                     /translation="AGILQLARGGATEFGPSGVRVNCVGPGVVETPLTAPIKANADWY
                     NAYAAKNTFNRWASPDEMVGPTLFLASDAASYVNGTIIYADGGWLAQDGRFTPPGM"
     gene            321..1394
                     /locus_tag="VLI40_10700"
     CDS             321..1394
                     /locus_tag="VLI40_10700"
                     /EC_number="1.1.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009027 - tartrate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0046395 - carboxylic acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tartrate dehydrogenase"
                     /protein_id="HSU97691.1"
                     /translation="MTVTNSMYRIAVIAGDGIGREVIPAGIDVLRHAVRGEGCTLEFA
                     DFPWGCDYYLQTGAMMSADALDRLQDFDAIYLGAVGAPGVPDHVSVWELILPIRQRFD
                     QYVNLRPMRLLPGVDSPLAGREPHDIDMICVRENSEGEYAGLGGRAFVGTPHEVAQQT
                     GIFTRRGVDRIAEYAFALAERRPRRLLASATKSNALQHSMVLWDDAVEAIANSHPTVE
                     WRKYHVDALAARMVTHPETLDVIVASNLFGDILSDLGAAITGSLGIAPGANINPERRY
                     PSMFEPIHGSAPDIAGQGIANPIGAIWAGALMLDHLGLTAAHDRIIDAITRVMAEGVV
                     RTPDLGGKATTQDLGSAIAGAIG"
     gene            1469..2833
                     /locus_tag="VLI40_10705"
     CDS             1469..2833
                     /locus_tag="VLI40_10705"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ectonucleotide
                     pyrophosphatase/phosphodiesterase"
                     /protein_id="HSU97692.1"
                     /translation="MSHFPKRCFAWLSVLSLCIAGSLAARTVSAQHNTKRHVILISID
                     GMTAIDYLHPDGGLKIPNLQALEARGCRADGMTGIFPTVTYPSHTAMITGEPSSVHGI
                     YTNTPLDPFGYENGGWYYYADKIRSPTLWQVLREADLKTAAVSWPVTVGAGIDYLLPE
                     YRPVRTPEDVSLMSALSTPGLFREMINVDSTDHPMTDAWRTKASVRILDEHQPDLLAL
                     HLSDLDAAQHRYGPHTPEAHAALEKIDAEIGEIHSAVAASGRAAGTAWVVVSDHGFLR
                     DSLLVNPMVALRDAGLIKTNPAGKLVDWKVFINNEGGSAFLEARNPNDTASIAKATEI
                     MRKLAADPANGIAKIDAPEDLKAMHSNPTAFLALEAARGFAIGSELEGPIVTPSTTLG
                     KHGYNPDIPELRPAMILSGAGVYPCQLREGVRIVDVAPTVAALLGVSMHGVAGRNVNT
                     PTSH"
     gene            2854..4143
                     /locus_tag="VLI40_10710"
     CDS             2854..4143
                     /locus_tag="VLI40_10710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine
                     deacetylase/succinyl-diaminopimelate desuccinylase family
                     protein"
                     /protein_id="HSU97693.1"
                     /translation="MLPTGQRVKDVDKLMAAIDAATDEMVDFTCDMLRIPTVNPPGDA
                     YVECAELIGRRLKTFGFAVDYPIAEGRPEHTASHPRMNVVGLKQGRSMRPLVHLNGHF
                     DVVPVGDGWSLDPFGGIVRDGRIYGRGSCDMKAGITAAIYAAEAIRRAGIAMHGSIEV
                     SGTVDEESGGFAGMAWLAEQGRVSSDRTDAVIITEPTDTDRIYIGHRGVYWFEVMTRG
                     RIAHGSMPFFGVNAISQMGLILAEIQQKLLPVLKSRSTSVPVMPPGARNATLNINGIA
                     GGQPVDGMQTPCVADLCRAVFDRRFLAEEEFDSVRGEIVSLLERVAHDSPELKYELRD
                     LMVVQPVHTPDGSSVVSALEQSIHEVLGRPASLAASPGTYDQKHVDRIAGVRNCVAYG
                     PGMLDLAHQPDEYCVIDDLVKCTKVLALSLLSLTGSQ"
     gene            4263..>5788
                     /locus_tag="VLI40_10715"
     CDS             4263..>5788
                     /locus_tag="VLI40_10715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSU97694.1"
                     /translation="MTRRSRWAAVLVSAFLVSSGASFANAQSTGAVAGRVIEASTGRP
                     LESAQIFASDDRNRVARSDAKGQFRLANLSPGSHTIDVRLIGFSNKSVPVTVTAGGTA
                     TIDVQLVTQPLDLDAVVVTGQGGGISKRRIATPVDVIGSDAIEASPATRVDELLQTKL
                     PSAQIRMTSGQAGTTSIIRTRGVTSVSNNSTPVIYVDGVRVDNLNTVATLGLNLSGVR
                     SQGAATSALADLPLDNIDRVEFVPGGAATTLYGSDAANGVIQIFTKHGVAGQTRGFFE
                     ARVGYDTPQTQFLFFKRTSDLIYRNGLTQGYSAGIDGGNDAVTYSASGNIRAAQSQRI
                     DGDNREFGLRNGISANLGQNAKYQGALTYNQSDAPRFRNGNSGGYNALWLLEDGRASA
                     LGFDNNIDDLNAADYAKLKSFITTAEALQDNTVFTRSWTTSHTLSFDPIPSIKTHATF
                     GLNNRFSKEQAIVTNQFLIATKSFPPGTTNQGSISDYERNYTSFTADVGLQHTGNIGS
                     "
BASE COUNT         1203 a         1661 c         1773 g         1151 t
ORIGIN      
        1 agctggtatt ctgcagctcg ctcgcggtgg ggcgactgag ttcggcccgt ccggggtccg
       61 cgtcaactgt gtcggcccag gcgtcgtcga gacgccactc acggcgccga tcaaggccaa
      121 cgcggactgg tataacgcgt acgccgcgaa gaatacgttc aatagatggg cctcgcccga
      181 cgagatggtg gggccgacgt tgttccttgc atcagatgcc gcgagctacg tgaacggtac
      241 catcatctac gccgacggcg gctggttggc gcaggacggg cggttcactc caccaggcat
      301 gtgacgatgg tgcacacggc atgaccgtaa ccaattccat gtatcgcatc gcggtaatcg
      361 cgggcgacgg tatcggcagg gaggtaatcc ccgccggcat cgatgtgttg cggcatgctg
      421 tgcgcggcga aggttgcacg cttgagttcg ccgattttcc gtggggttgt gactactacc
      481 tccagacagg cgcgatgatg agcgccgacg cgttggacag gctgcaggat tttgacgcga
      541 tctatctggg tgccgtcggg gctcctggag tccccgatca cgtttcggtg tgggaactca
      601 tcctgccgat ccgccaacgc ttcgatcagt atgtgaacct gcggccgatg cgactgcttc
      661 caggtgtcga cagtccactg gctggccgcg agccgcacga catcgacatg atctgcgttc
      721 gagagaactc ggaaggtgag tatgccgggc tcggcggccg cgcattcgtc ggaacgccgc
      781 acgaggtcgc tcagcagacg ggcatcttca cgcggcgagg cgtggatcgg attgcggaat
      841 acgccttcgc actcgccgaa cgcaggccac gccggctcct ggccagtgca acgaagtcga
      901 atgcgcttca gcactcgatg gttttgtggg atgatgcggt cgaggcgata gcgaatagcc
      961 accctacggt cgagtggcgc aagtatcacg tcgatgcgct cgcggcgcga atggtaacgc
     1021 acccagagac gctcgatgtc atcgtcgcgt cgaatttgtt cggtgatatt ctcagcgatc
     1081 tcggtgcagc gatcactggc agtctcggaa ttgcgccggg cgccaacatc aatcccgagc
     1141 ggcgctatcc gtcaatgttc gaacccattc acggttcggc gccagatatc gcaggacagg
     1201 gaatagccaa ccccatcggc gcaatctggg cgggtgcatt gatgctcgat cacctcggac
     1261 ttactgcagc gcatgatcgc atcatagacg cgatcacacg cgtgatggcg gaaggagtgg
     1321 tgcgcacgcc cgaccttggc ggcaaggcga cgacacaaga tctcggatcg gctatcgcgg
     1381 gcgcgatagg atgaggcggc tgcggttggc tcatgccgag gttgagcaat ctcatgttca
     1441 taccagagat atgcgaccag caaccagtat gagtcacttc cccaagcggt gtttcgcgtg
     1501 gctttcggtg ctatcgctct gcattgcggg ctcgctggcg gcacggaccg tgtcagcaca
     1561 gcacaacacc aaacgccacg tgattctcat ttcgatcgac ggcatgacgg cgatcgacta
     1621 cctccatccg gatggcgggc tcaagattcc gaacctgcaa gcactggaag caaggggctg
     1681 tagagcggac ggtatgacag gcatttttcc gacagtcacc tatcccagcc atacggcgat
     1741 gatcaccggt gaaccgtcct cagtgcatgg catttataca aacacgcctc tcgatccgtt
     1801 tggctacgaa aacggcgggt ggtattacta cgctgacaag atcaggtcgc caacgctctg
     1861 gcaggtgctg cgcgaggccg atctcaagac ggcagcggtt tcgtggcccg taacagtcgg
     1921 cgcggggatc gactatctgc tgcctgagta tcgtcccgtg cgcacgcccg aggatgtgtc
     1981 gctgatgtcg gctctctcca cgcccgggtt gtttcgggag atgatcaatg tcgattcgac
     2041 agatcatcca atgacagacg cctggcgcac gaaggcgagc gtcaggattc tcgacgaaca
     2101 tcaaccggat ctgctggcac tgcatctatc cgacctggat gccgcgcagc atcgctacgg
     2161 tccgcacact cccgaagctc atgctgcgct ggagaagatc gatgctgaga tcggagaaat
     2221 ccacagtgcc gtcgcagcgt cggggcgtgc cgcagggaca gcctgggtgg ttgtttctga
     2281 tcatggattc cttcgggatt ccctgctcgt caatcccatg gttgcgttgc gcgatgccgg
     2341 tctgatcaag accaatccgg cgggcaagct ggtggactgg aaggtattca tcaacaacga
     2401 aggtggatcg gccttccttg aagcacgtaa cccgaatgac accgcaagca tcgcgaaagc
     2461 gaccgagata atgcgaaagc tcgctgctga tccggccaat gggatcgcga agatcgacgc
     2521 gccggaagac ctgaaggcga tgcattccaa cccgaccgca tttctggcat tggaggcagc
     2581 tcgcgggttt gcgattggca gtgaactcga gggcccgatc gttacaccgt cgactacgct
     2641 cggtaagcac ggctacaacc cggatatccc ggaactgcgg ccagcgatga tcctgtcagg
     2701 cgcgggggtc tatccatgcc agctacgaga aggcgtcagg atcgttgatg tagcaccgac
     2761 ggtggcggca ttgctcggcg tgtccatgca tggtgtagcg ggacggaacg tcaatacacc
     2821 gacttcgcac tgagcgagga tgatatcgtg agcatgttgc caacaggaca gcgcgtcaaa
     2881 gacgtcgata agctgatggc ggcgatcgat gcggctacgg acgagatggt ggatttcacc
     2941 tgcgacatgt tgcgcatccc gaccgtgaat ccgccgggcg atgcgtacgt agagtgcgcc
     3001 gagttgatcg ggcgacggct caagacgttc ggattcgccg tcgactatcc gatagccgaa
     3061 ggccgtccgg agcacacggc atcgcatccg cgcatgaacg tcgttgggct aaaacagggg
     3121 cggagcatgc gtccgctggt gcacctgaac ggccatttcg atgttgtgcc ggttggagac
     3181 ggatggagcc tcgatccatt cggcgggatt gtgcgcgatg ggcgcatcta tggacgagga
     3241 tcgtgcgaca tgaaggccgg gatcactgct gcgatctacg cggccgaagc gattcggcgc
     3301 gcagggatcg cgatgcatgg atccatagag gtcagcggca cagtcgacga ggaaagcggt
     3361 ggattcgcgg gtatggcctg gctcgcggag caaggacggg tgagctcgga ccgcacggac
     3421 gcggtaatca ttaccgagcc gacggatact gaccgcatct acatcgggca ccgcggagta
     3481 tactggttcg aagtcatgac gcgcggtcga atcgctcatg gatcgatgcc tttttttggc
     3541 gtcaacgcga tctcgcagat gggcttgatc ctcgcggaga tccaacagaa gctgctgccg
     3601 gttctcaaga gtcgcagcac atcggtgccg gtgatgccac ccggtgcgcg taacgcgaca
     3661 ctcaatataa atggcatcgc cggcggccaa cctgttgatg gaatgcagac accgtgcgtc
     3721 gctgacctgt gtcgcgcagt gtttgaccgt cgctttcttg cagaggaaga attcgactcg
     3781 gtgcgaggag agatagtgtc tctgctcgaa cgggtggcgc acgattcgcc cgaactgaaa
     3841 tacgagttgc gcgacctcat ggtcgttcaa ccggtgcaca ctccagacgg ttcaagtgtt
     3901 gtgtcagctc ttgagcagtc gatacatgaa gtactcggtc gaccggccag tcttgccgca
     3961 agtccgggga cgtatgatca gaagcacgtg gatcgaatcg ccggtgtgcg gaactgtgta
     4021 gcctacggtc ccggcatgct tgatcttgcg caccagcccg acgaatactg tgtgatcgac
     4081 gatctcgtca agtgcacgaa ggtgctcgca ctctctctac tatcactgac tggatcccag
     4141 tgacagcgct cttcaatggc acgtcaggta gctgatcggt tttaacgcac acgttttctt
     4201 cttgacaagc gttgtaccgg cttaaacatt ggccacttac cgttgatctt ccgagggcac
     4261 cgatgacacg tcgttctcga tgggctgctg ttctcgttag tgcattcctg gtatcgtcag
     4321 gcgcatcgtt cgcaaatgct cagtcgacag gcgccgtcgc tggccgcgtg atcgaggcaa
     4381 gcacgggtag gccgctggag tccgcgcaga tattcgcgag cgatgatcgc aatcgcgtcg
     4441 ctcgctcgga tgccaaagga caatttcgtc ttgccaacct gagtccagga tctcatacga
     4501 ttgatgttcg gttgatcggg ttctccaaca agtctgtgcc tgtcactgtg acagcgggcg
     4561 ggactgcgac gatcgacgtt caacttgtta ctcaaccgct ggacctcgat gcggttgtgg
     4621 tgaccggtca gggtggcgga atctcaaagc gccgtatcgc aacgcccgtc gatgtgatcg
     4681 gatcggatgc gatcgaagcg tcgccagcga cgcgcgtcga tgagttgctg caaacaaaac
     4741 tgccgagcgc gcagatacgc atgacgagcg gccaggcggg taccacgtcg atcatccgca
     4801 cacgcggtgt gacgtcagtg agcaacaact cgacgccagt catctacgtt gacggcgtac
     4861 gagtcgacaa tctgaacacc gtcgcaacac ttggtctcaa tctctccggc gtgagatcgc
     4921 agggcgccgc caccagtgca ctcgccgatc taccgctcga caacatcgat cgagtggaat
     4981 tcgtccctgg tggtgccgct acgacgttgt acggctctga cgcagccaat ggcgtgatcc
     5041 agatattcac caagcacgga gtcgctgggc agacgagggg cttcttcgaa gcgcgcgtgg
     5101 gttacgacac gccgcaaaca cagttcctct tcttcaagcg cacatcggat ctcatctacc
     5161 gtaacgggtt gacccaggga tattccgcag gcatcgacgg cggcaacgac gctgtcacat
     5221 acagcgcgtc tggtaacatt cgcgcagccc agagtcagcg aatcgacggt gataatcgag
     5281 agttcggttt gcggaatggc atcagcgcaa acctgggcca gaatgccaaa tatcagggcg
     5341 cactcacgta caaccagagc gacgcaccgc gcttccgtaa cggcaattcc ggcggttaca
     5401 acgcgctctg gctactcgag gacgggcgcg cctccgcgct gggcttcgac aacaatatcg
     5461 acgacttgaa cgctgccgac tatgcaaagc tgaagtcgtt cattactacg gccgaggcgt
     5521 tgcaggacaa tacggtgttc actcgttcgt ggaccacgtc gcacacgctc tcgttcgatc
     5581 ccattccgtc gataaagacg catgcgacgt tcgggttgaa caaccggttc agcaaggagc
     5641 aggcgatcgt cacaaaccag ttcctcatcg ctaccaagtc gttcccgccg ggaacgacga
     5701 accagggttc gatttccgac tacgagcgca actatacgag cttcacggcc gacgtcggtc
     5761 tccaacatac cggcaacatc ggcagcaa
//
LOCUS       DATIMD010000484         3643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2794506, whole genome shotgun sequence.
ACCESSION   DATIMD010000484 DATIMD010000000
VERSION     DATIMD010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3643
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2794506"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(238..1407)
                     /locus_tag="VLI40_10720"
     CDS             complement(238..1407)
                     /locus_tag="VLI40_10720"
                     /inference="COORDINATES: protein motif:HMM:NF012927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HSU97695.1"
                     /translation="MIIDPTSDPISDPTSDPISAARPGAAGTLLSPVQLGPVSLPNRI
                     VMAPMTRSRADAVGNLTAMMADYYRQRASAGLIITEGVVISPRGKGYPNTPGIFTGEQ
                     LAGWTRVVEAVHGAGGRIFAQLWHVGRVSHPLLQPDGALPVAPSALAVPGELYTNDGM
                     KAFVAPRSLETGEIAEIVDQFRRAAMFARQAGFDGVELHAANGYLIDQFLRDGSNLRT
                     DRYGGSVANRARFLLEVVDAVSGVYGADRVGVRLSPLFSMMGMYDSAPDVTFHNAASA
                     LSEFGLAYMHVVEQRSGAFDWRGLRSAFGGIYMANGGYDRASAEAAIHTAHADLVSFG
                     TPYIANPDLTERFRWGTPLSAGDRATYYGGGAQGYTDYATLELEDVMDVAVGVAV"
     gene            complement(1409..2200)
                     /locus_tag="VLI40_10725"
     CDS             complement(1409..2200)
                     /locus_tag="VLI40_10725"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSU97696.1"
                     /translation="MVVSEGLSSPFKQRQQERRRDGTCRGAASLKRNYNRPMVGGVVQ
                     VFSNIPVSSESSDAAPATTSTSRATFRRTARALALTVALATVPAIATQVEAQTTVAIR
                     PTVGVFVPTGDQRDLLKDAVLVGIQGSYNLAQNFALTGTFGWSPNKDQLLNDEKVDLF
                     QYDLGIEGRLNNLTPTASVSTRPYATLGAGARTYHFRDLDANSQTNFLGFGAVGVDLA
                     QATGPIGLRIEARDNVTAFKGLQSELAERKARNDLQFTAGLTIGF"
     gene            complement(2270..2728)
                     /locus_tag="VLI40_10730"
     CDS             complement(2270..2728)
                     /locus_tag="VLI40_10730"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSU97697.1"
                     /translation="MKQSPELGVTPDAQVEDQDHGRYMVMLLEAARSIQERLEVVLAE
                     VGLTSAKYQAIDALARAGEPLTLSELAGSLRCVRSNITQLVDRLEADGLVKRVDDPAD
                     RRAVRAVVTPLGMDRRADGTQAIAKLQDEVAAHVAPSERAMLDRVLGALK"
     gene            2804..3298
                     /locus_tag="VLI40_10735"
     CDS             2804..3298
                     /locus_tag="VLI40_10735"
                     /inference="COORDINATES: protein motif:HMM:NF016840.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSU97698.1"
                     /translation="MKNEENVTAPWRTIVASSVDWREAHATFDDAVAGLSAELRGRRP
                     EHYPHSAWELVEHIRLAQADLIAFIQNASYTAPKWPDDYWPSEPAPPTTDAWDESIAA
                     VRRDRAELKAIATRSTLDLTATIPWGDGQTYLRTILVAVDHTAYHVGQLIAVRQMLGA
                     WPAA"
     gene            complement(3307..>3643)
                     /locus_tag="VLI40_10740"
     CDS             complement(3307..>3643)
                     /locus_tag="VLI40_10740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97699.1"
                     /translation="KPITPTELEFARSASVKRLPLQFETTLAREGAVNTLLSDDLNLQ
                     YYQTLVPNLKRVTSADAARAGKAHLDADHMAIVVVGDRKVIEPGLRALGLAPVVIVPP
                     LSSVPPQIQ"
BASE COUNT          710 a         1132 c         1091 g          710 t
ORIGIN      
        1 tggcgtttcc tgggcgttga cagcaaacgg aacgatcagt gcgagcgagg cgagccggag
       61 gatgcgcatt ggcaggcaga ggagacggga actgtgcccg aatgtggctg agacgtgcat
      121 cgacgtcaat agcggcggca atgcgcggtc gcttcactgg catgacgcaa tgcctgacgc
      181 cgctcacgca catcgcctgt aatcgattcg taattgtgga ttcacagtga ggcgctatta
      241 taccgcaacg cccaccgcaa catccataac gtcttccagc tcgagtgtcg cgtagtctgt
      301 gtatccctgc gcaccgccgc cgtagtacgt tgcgcgatcg ccggcgctca acggtgtgcc
      361 ccatcggaat cgttcagtaa gatccggatt cgcgatgtag ggtgtgccga acgatacgag
      421 gtcggcgtgc gcggtgtgga tggccgcctc cgcactggcg cggtcatagc cgccattggc
      481 catgtaaatg cctccgaatg cggaccggag cccccgccaa tcgaatgcac cacttctctg
      541 ctccaccacg tgcatgtatg cgagaccgaa ttcgctcaac gcagatgctg cgttgtggaa
      601 cgtgacgtct ggggcactgt cgtacatacc catcatcgaa aagagcggcg acagccgcac
      661 gccaacccga tcggcgccgt acacgccact cactgcatcc actacttcga ggagaaagcg
      721 cgcgcgattc gctactgatc cgccataccg atcggttcgc aggttgctac cgtcgcgcag
      781 gaactgatcg atcagatatc cgttggccgc gtgcagctcc actccgtcga agcctgcctg
      841 ccgtgcgaac atcgctgcgc gacgaaactg atcgacgatc tcggctatct cgccagtctc
      901 gagcgagcgc ggcgcaacga atgccttcat cccatcgttc gtgtacagct cgcccggtac
      961 agccagcgcc gatggtgcaa ccggcagcgc accatcaggc tgcagcaacg gatgcgagac
     1021 tcgacccacg tgccatagct gagcgaagat ccgtccgccc gcgccatgta ccgcttccac
     1081 tactcgcgtc catccggcaa gctgttcgcc ggtgaagatg ccaggcgtgt tcgggtagcc
     1141 cttcccgcgc ggtgagataa ctactccttc cgtgattatc agcccagcgc tcgcacgctg
     1201 ccggtagtag tccgccatca ttgcagtcag gttgcccacc gcgtcagcgc ggctcctcgt
     1261 catcggcgcc atcacaatgc gattgggcag gctcaccggt ccgagctgga ccggtgagag
     1321 aagcgtgccg gccgcgccag ggcgcgcagc cgaaattgga tcagaagttg gatcagaaat
     1381 tggatcagaa gttggatcaa tgatcatttc agaaaccgat cgtcagacca gcggtgaact
     1441 gcagatcgtt gcgcgcctta cgctcggcga gctcactctg caggcccttg aacgcggtga
     1501 cgttgtcgcg cgcttcgata cggagcccga tcgggccggt cgcctgcgcc aggtccacgc
     1561 ctactgcgcc gaagccgagg aagttggtct gggaattcgc gtcgaggtcg cggaagtggt
     1621 acgtgcgtgc gccagcaccg agagttgcat acggtctggt cgagacactc gccgttggcg
     1681 tgagattgtt gagccgaccc tcgatcccga ggtcgtactg gaacagatcg accttctcgt
     1741 cgttgagcag ctgatccttg ttcggcgacc agccgaaggt gccggtcagg gcgaagttct
     1801 gcgccaggtt atacgatccc tggataccca cgaggacagc gtccttgagg agatcgcgct
     1861 ggtctccggt cggtacgaac acaccaaccg tcgggcggat cgcaaccgtc gtctgcgcct
     1921 cgacttgcgt cgcaatggcg gggaccgtgg ccagggcgac cgtcagcgcc agtgcacgtg
     1981 cggtgcgccg gaatgtcgcg cgagatgtgg atgttgtggc tggtgctgca tcggatgatt
     2041 cactggaaac tggaatgttg ctgaacacct gaactactcc tccgaccatc ggccggttgt
     2101 aattgcgctt cagtgatgcg gcgccgcgac acgtaccatc tcttcgtcgc tcctgttggc
     2161 gctgcttgaa tggcgaggac aggccctcgc ttactaccac ttcatcacat agattatata
     2221 accactggat tatccatata tgtacttttt aggcaaataa aagaaacaac tacttcagtg
     2281 ctcccagtac ccggtccagc atcgcgcgct cggaaggagc aacatgggcc gcgacttcgt
     2341 cctgcagctt cgcgatcgcc tgagtgccat ctgctcggcg gtccatcccg agtggcgtga
     2401 cgacggcccg caccgcgcgg cggtcggccg gatcatcgac gcgcttcacc aatccatctg
     2461 cctcgagtcg atcgaccagc tgggtgatgt tggagcgaac gcacctcagg ctgcccgcga
     2521 gctcactcag cgtgagtggc tcacctgctc tggccagcgc atcgatcgcc tggtacttgg
     2581 ccgacgtcag cccgacttcc gccaggacca cctcgagacg ctcctggata ctccgcgcag
     2641 cttcgaggag catgaccatg taacgtccat ggtcctgatc ttcgacttgc gcgtccggag
     2701 tgacgccgag ctcgggtgat tgcttcatgg aatgaatagt acagatatgt cgcttttctg
     2761 tcaagcgatt gccgcatatg cttctacaaa ttctggagac cgcatgaaaa atgaagagaa
     2821 cgtaaccgct ccctggagaa ccatcgtcgc ctcgtcagtc gactggcgcg aggcgcacgc
     2881 gacgttcgac gatgcggttg ctggcctgag cgccgagcta cgcgggcgca ggcccgagca
     2941 ctacccgcac tctgcgtggg agctggtgga gcacattcgg ttggcacagg cggatctcat
     3001 cgcattcatt cagaacgcct catacacagc gccgaagtgg cccgatgatt actggccatc
     3061 cgagccggcg ccgccaacca ccgatgcgtg ggacgaaagc atcgcggccg tgcgacgcga
     3121 tcgcgcggag ctcaaggcga tcgccacacg ctcgacactc gatctcaccg cgacgatccc
     3181 gtggggcgat ggacagactt acctgcgcac catcctcgtc gcggtcgacc acactgcgta
     3241 tcatgtcggc cagctgatcg cggtgcgcca gatgctcggc gcgtggcccg ctgcgtgatc
     3301 actttgctat tggatctgtg gcggcaccga tgagagaggc ggcacgatca cgaccggtgc
     3361 aagaccgagc gcgcgaaggc ctggctcgat caccttgcga tcacccacga cgacaatggc
     3421 catgtgatcg gcatcaagat gcgccttccc ggcccgcgct gcgtctgcgc tggtcacccg
     3481 cttgagattt ggaacgaggg tctggtaata ctggagattc agatcatcgc tcagcagcgt
     3541 attcaccgct ccttcgcgcg caagtgtagt ctcgaactga agcggtagtc gcttgacaga
     3601 ggccgatctg gcgaactcca gctcggtcgg agtaattggt ttg
//
LOCUS       DATIMD010000485         3205 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3085256, whole genome shotgun sequence.
ACCESSION   DATIMD010000485 DATIMD010000000
VERSION     DATIMD010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3205
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3085256"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..339)
                     /locus_tag="VLI40_10745"
     CDS             complement(<1..339)
                     /locus_tag="VLI40_10745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSU97700.1"
                     /translation="MSRPAILAAAVALFCLPFPSVVRAQRIVPRHSIIQKPVDSTATR
                     DVTNKPAAAAVAPGTGSIMGAALDSLHEEMLVHAGVTVMGLAGRHAVTTDAGAFRIDS
                     LPPGKYVLEVT"
     gene            377..1588
                     /locus_tag="VLI40_10750"
     CDS             377..1588
                     /locus_tag="VLI40_10750"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HSU97701.1"
                     /translation="MGTQNSNREVVFLSGVRTPFGTFGGALRDVSAIQLGVIASKIAI
                     DRASIAPASIQQTIFGNVLYTTNDSLYFARHVALRSGCPTEAPALTVNRLCGSGFQAV
                     VSGALEIITGEAEVCLVGGAESMSQAPHAVRGIRWGVPLGKSPVLEDTLTEGLKDSFA
                     NVSMADTAENLNEQYGIGRAASDEFALRSQMLARDAWANGVYDEEVIPVPITNPRTRE
                     TEEFRRDEHMRPNSTAEGLAKLRTAFRENGVVTAGNASGIGDGAGAMVIASREYADRH
                     GIKPLARLVSWGLAGVDPRIMGIGPVPATKAALERAHMSMDDMDMIEVNEAFATQTCA
                     VRAELRIPLEKLNMHGGAIALSHPLAASGARITVHLLHALRASGKRYGLGTACIGGGQ
                     GIALIVESLDA"
     gene            1621..2736
                     /locus_tag="VLI40_10755"
     CDS             1621..2736
                     /locus_tag="VLI40_10755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97702.1"
                     /translation="MKKLLRFAAATAGVASIAGVFACASAPASQPRPVEPIIMGRARD
                     TTWPIKTRENVDLWLHGFALLSNDSSAQVPLFRRGYRDDLTVLKNKANVLTQLDVNHD
                     KLANQLASSRLLINAQFVPFYFSSLEEMHSVIDRFVASNGSPGSAKSQTEAAQFAVLA
                     SYFQSPADRTWLALFASSLWDEDTKFYHSYWVQQQRERANVIDSTTAMWQHLVRPRIQ
                     RFLTNTQQRDGDIILSLPLAGEGRTISAAGGFRTAVAVTFPNRPSDVPQAMYGLAHEL
                     VGTVANAAIADNTTPAEQRSGAADRISSSAAVRAGLMLLEKFVPELADGYARYYVSAT
                     GATPGATPRTQLASLFPIPDAIRDAMKRQIDNIDSGI"
     gene            2726..>3205
                     /locus_tag="VLI40_10760"
     CDS             2726..>3205
                     /locus_tag="VLI40_10760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97703.1"
                     /translation="MESDLPDRTPASTAVTAPEHGLDRRAVERVLARAAELQGIGGGE
                     QDADAITEAKLLEIAKEAGLTVTSVRQALAEERTRVSNDTDDDSRWLVRVAGPTSVSA
                     SRTIPGEPEAIISYLDAYMQRDECMQVQRRFADRVTWEARNDWVAAIKRGLRSGGRSY
                     "
BASE COUNT          628 a         1022 c          985 g          570 t
ORIGIN      
        1 cgtcacctcc agcacgtact tgcccggtgg gagcgaatcg atgcggaacg cgcctgcatc
       61 cgtcgtcact gcatgccgcc ccgcgagccc cattaccgtg acaccggcat ggaccagcat
      121 ctcctcgtgc agtgagtcga gtgcagcgcc cattatgctg ccagttcccg gcgctactgc
      181 agcagccgct ggcttgttgg tcacatccct ggtcgccgtc gagtcaaccg gcttctgaat
      241 gatcgagtgg cgtggaacga tccgttgtgc ccgaacgaca gacggaaatg gcaggcaaaa
      301 cagcgcgaca gctgctgcca gaattgcagg acggctcata gaatctctga ccatgttgcc
      361 ccgtatatta ctccagatgg ggactcaaaa ctcgaatcgc gaagtcgtgt ttctctccgg
      421 cgttcgcact ccattcggta ccttcggcgg cgcgcttcgc gacgtttccg ccatccagct
      481 cggcgtcatc gcatccaaaa tcgcgattga ccgcgccagt atagcgccag catcgataca
      541 gcagactatc ttcggaaatg tactctatac gaccaacgat tcgctctact tcgcgcgcca
      601 cgtagcgctt cgatctggtt gcccgaccga agcgcccgca ctaactgtaa accgcttgtg
      661 tggctcaggg ttccaagcag tcgtgagcgg agccctggag atcatcaccg gagaggctga
      721 agtctgcctc gtaggcggcg ccgagtccat gtcccaggcg ccccacgccg tccgcggaat
      781 ccgctggggt gtgccactcg gcaaatcccc cgtgctggaa gatacgctga cggaaggcct
      841 caaggactcg tttgcgaatg tctcgatggc cgacaccgca gaaaacctca acgagcagta
      901 cggaattggc cgggccgcct cggacgagtt cgcgctcaga tcccagatgc tcgcacggga
      961 cgcctgggcg aacggggtgt atgacgagga agtgatcccc gttccaatca cgaatcccag
     1021 gacccgtgag acggaagaat tccgccgaga cgaacatatg cgccccaatt ccactgctga
     1081 aggactcgcg aagctgcgca ctgcgttccg cgaaaacggt gtcgtgaccg cgggcaacgc
     1141 gtccggaatc ggcgacggcg ccggagcgat ggtcattgcg agccgtgaat atgcggacag
     1201 gcatggaatc aagccgctcg cacgcctggt gtcgtgggga ctcgctggcg tcgatccacg
     1261 catcatggga ataggcccgg taccagccac aaaagctgca ctcgagcgcg ctcacatgtc
     1321 gatggacgac atggacatga tcgaggtcaa cgaggcattc gctacgcaga cgtgcgcggt
     1381 tcgagcggag ctgcgcattc cgctcgaaaa gctgaacatg cacggcggcg cgatcgcact
     1441 gagccatccg cttgccgctt ccggcgcgcg catcactgtc catctgctgc acgcgctccg
     1501 cgccagtggc aagcgctatg gactcggcac cgcctgcatc ggcggcggcc aggggatcgc
     1561 gctcatcgtg gagtcgctcg acgcttgatc gtcatgcaac catcccgcaa atccgaacga
     1621 atgaagaagc ttctgcgttt cgccgccgcc acagctggag tggcatccat cgccggcgtg
     1681 tttgcatgcg catccgcgcc cgcgtctcag cccaggcctg tcgagccgat aatcatgggc
     1741 cgcgctcgcg atacgacctg gccgatcaag acgcgagaga atgtcgatct gtggctgcac
     1801 gggttcgcac tgctgtcgaa cgacagctcg gcacaggtcc cgttgtttcg tcggggctac
     1861 cgcgacgatc tgaccgtgct gaagaacaag gcgaacgtgc tcacgcagct ggatgtcaac
     1921 cacgacaagc tcgcgaatca gcttgcgtcg agtcgtctgt tgatcaacgc gcagttcgtt
     1981 ccgttctact tctcctcgct ggaagagatg cattccgtga tcgaccgctt cgttgcgtcg
     2041 aacggcagtc cgggttccgc gaaatcacag accgaagcgg cgcagttcgc cgtgctcgcc
     2101 agttacttcc agagtcccgc ggatcgtacc tggctcgcgc tgttcgcctc gtcgttgtgg
     2161 gatgaggaca ccaagttcta ccattcctac tgggtgcagc agcagcgcga gcgcgcgaac
     2221 gtgatcgatt ccaccaccgc aatgtggcaa cacctcgtgc gcccgcgcat ccagcgattc
     2281 ctcacgaaca cgcagcagcg cgacggcgac ataattttgt cgctgccgct cgctggcgag
     2341 ggtcgcacga tcagcgcggc cggcggattc cgcacagcag tcgcggtcac atttccaaat
     2401 cgtccgtccg acgtgccgca agccatgtac ggccttgcgc acgagctggt cggtacggtc
     2461 gccaacgccg ccatcgccga caacaccaca ccggcagagc agcgcagcgg tgcagcggat
     2521 cgcatctcca gctcagcggc ggtgcgcgcc ggcctcatgc tgctcgagaa attcgtcccc
     2581 gagctggctg acggttacgc gcgctattac gtaagcgcga caggtgcgac gccaggagca
     2641 acgccccgca cgcagcttgc gtcactgttt ccaattcccg acgcgatccg tgacgcgatg
     2701 aagcgccaga tcgacaatat cgacagtgga atctgatcta ccggacagga cgcctgccag
     2761 cacggcggta accgcgcccg agcacggcct cgatcgtcgt gccgtggagc gtgtactcgc
     2821 tcgtgccgcc gagttgcagg ggatcggtgg cggcgagcag gatgcggatg cgataacgga
     2881 agcgaagctg ctggagatcg cgaaggaagc cgggctcacg gtcacgagcg ttcgacaggc
     2941 gctcgccgag gagcgcacgc gcgtcagcaa cgacacggat gacgatagcc gctggctcgt
     3001 tcgcgtcgcg ggtccgacat cggtatcggc gtcgcggacg attcccggcg agccggaagc
     3061 gattatttca tatctggacg cgtacatgca gcgtgacgag tgcatgcagg tccagcgcag
     3121 attcgcggat cgcgtgacgt gggaggcgcg caacgattgg gtcgcggcga tcaagcgcgg
     3181 acttcgcagc ggagggcggt cgtat
//
LOCUS       DATIMD010000486         6330 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1356813, whole genome shotgun sequence.
ACCESSION   DATIMD010000486 DATIMD010000000
VERSION     DATIMD010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6330
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1356813"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..408
                     /locus_tag="VLI40_10765"
     CDS             <1..408
                     /locus_tag="VLI40_10765"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSU97704.1"
                     /translation="KSKEGAVLRGNPNYLQLVGSRRLSTELGNLAESVNKDGKHGLVF
                     DYAMDANGHPDNIYCRSDHYEYARYNIPIIFFTTGLHSDYHQVTDEPQYIDYDHMARV
                     DNFIEDLAMHVANMDHRPVVDGPHMDPHGSCKQ"
     gene            612..2942
                     /locus_tag="VLI40_10770"
     CDS             612..2942
                     /locus_tag="VLI40_10770"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSU97705.1"
                     /translation="MNRLFSILMLLVMPAVVHAQAAVHGTVVDQQTGAPIVGASVVVT
                     GTTVGAITNDAGGFNINTDLSVTSLTVTSPGYAAREIPVTDATAPLRIRLMASQTRLP
                     GVQIVANKPTPSTAILTQQDLNRASGLSLENSINTVPGVFMQSRTPWGGARITIRGYY
                     PSTSGNSPNSNGLGYNVFLNNIPITDASGATILDDIDYSTLGNVEVIKGPASSQYGSQ
                     IGGTVRFTTARPAPNETSIGQQVTSGSYGLLRTNTTFQTASNTSDLLLNYGHQTYDSF
                     RPHSASLKDYLSATGDYTVSDNQTLSAYFSYNRSFEELAGEIDSADFYARRPVSNAAY
                     LANDSHIQITSFITGLTDHYRLTDDITNQTTVFGTGRTYGQPFAHGFTDANQFTFGAR
                     SAFGYSGQWGGVDVTGTLGGMLERTNISTNGVFIVPAPPFPSRPTDQENYASIASLFT
                     EWNFALPSQFTLTVGASLNKNEFGIRNMLKNNQLSDTTTTQVRSFDALIAPRVALTRG
                     FGNNASVYASVSSGYTPPLLSNTIDNTGAVDLSLKPERAVQYEVGAQGSLLANRLNGE
                     ISLFDIENSDKLISQTVNSITFTTNAGKQRDRGAEASLSYLVIDKPTQLLSLVRPWAS
                     YTYTDSRFIDFRSDNNNTTATVDFSDNAVPRVPRNAFNGGIDLASNQGVYFNSTYQYV
                     DRVPVTFDNSTYVKSYDLLGAKIGYKKQVDRHWSLDASAGGDNLLGSTYYSFLFVGPN
                     YAGLAQAPDGGHGDGYIIPGPYKATVYGNLTLRYTF"
     gene            complement(3153..3380)
                     /locus_tag="VLI40_10775"
     CDS             complement(3153..3380)
                     /locus_tag="VLI40_10775"
                     /inference="COORDINATES: protein motif:HMM:NF017353.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HSU97706.1"
                     /translation="MNKKGASNEAKGAMKEAAGKVKGDVGDALDNSSMHAEGRSEQLK
                     GKVQKNFGKAERALDPDTRRDLNDSDTTRRP"
     gene            3549..4868
                     /locus_tag="VLI40_10780"
     CDS             3549..4868
                     /locus_tag="VLI40_10780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97707.1"
                     /translation="MIKRSRIELPLRTIARAAIAVAVAIAITITVAGCADVPTAFGPT
                     PAQAKANADGLFGAFVKRFTNVERTPRYARAREMLLHYALTPSEVYGDTSIWTSSGPD
                     GYRTLFGNATFRDGRYIFSNTVTDDPVQELGEGRHIMRLHKLSNDDYDWFTGVDFVAG
                     TIKANDFGNVITHWLAASEGHSGAELRAGYRTQFPRTTDALGKLYSLDTLVSTRDADG
                     ANNLYAVVHITPDGIRNDYPAYAAFMAKYADKVKLHFTLQDSRGKWIEVTSRDDYVTV
                     HLRSRDGHFAPLEGPLRPMPDTLAMRVDFTAKIKLFTIGVEHMTGEWVNIHTDHDRGW
                     ALRFTKEPGWVLPPVVGYLIKSPLRRPFEGNGTQFRFTIHDQPGAPTLMSRRGSTTVR
                     ESAILRFIGKLGGAAMGDFVSNAEADENRFNVVLYSALKADVDSAIR"
     gene            complement(4865..5812)
                     /gene="rnz"
                     /locus_tag="VLI40_10785"
     CDS             complement(4865..5812)
                     /gene="rnz"
                     /locus_tag="VLI40_10785"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0042780 - tRNA 3'-end processing [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HSU97708.1"
                     /translation="MDLSVRFLGTSASRPTVERNVTSLAIRRGGETFLFDCGEGTQRQ
                     MMRYGVSFNVGDIFFTHMHADHILGVTGLIRTMALQGRTEPMRLFGPPKSERLLRQAV
                     TLGSDKQHFPINYVEMTPGEPLQRDGYSILPFSVEHGGALALGLAIVESPRLGRFNPD
                     LARSMGIPEGPLWGQIHKGQEITLPDGRVVHPSELVGPTRSGRKLVFTGDARPSDTTA
                     EVAAGADLLIHEATFADEEAPLAIETGHSTAREAATVADKAGVKRLVLTHISSRYSRD
                     VQELAAEARSVFPSAIVARDGMEVVIPFDDEDVDGAAAT"
     gene            5925..5997
                     /locus_tag="VLI40_10790"
     tRNA            5925..5997
                     /locus_tag="VLI40_10790"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5958..5960,aa:Ala,seq:cgc)
BASE COUNT         1301 a         2021 c         1760 g         1248 t
ORIGIN      
        1 aagtcgaagg aaggcgctgt gttgcgtggc aacccgaact atctgcagct cgttggctcc
       61 cgccgtctct cgaccgagct cggcaatctt gccgagtcgg tgaacaagga cggcaagcat
      121 ggtctcgtgt tcgactacgc catggatgcc aacggccacc cggacaacat ctactgccgc
      181 agcgatcact acgagtacgc gcggtacaac atcccgatca tcttcttcac caccggcctg
      241 cactctgatt atcaccaggt gacggacgag ccacagtaca tcgattacga ccacatggcg
      301 cgcgtcgata acttcatcga agaccttgcc atgcacgtcg cgaacatgga tcaccgtcca
      361 gtagtcgacg gtccgcacat ggacccgcac ggaagctgca agcagtaggc tttctgcagg
      421 tttccggttg aagaaggcgc gaacagaaat tcatgttcgc gccttcttcg tattgaaatg
      481 atgcgtatcg tgcggcaacg ctggcgcatg cgtcggcgta ccagaatggg tgtcattttt
      541 gtcatctttc tgtaaggttg gcggcgtagc ggcacctgat cccttcccat ctccaccgct
      601 ggaaacattt gatgaacagg ttgttctcca ttctcatgct actggtcatg cccgcagtgg
      661 ttcacgcgca ggcagccgtg cacggtacag ttgtcgatca acagaccggc gctcccatcg
      721 ttggcgcatc ggttgtggtc acaggtacga cagtcggcgc aatcacgaac gacgctggtg
      781 gcttcaacat caatacagat ctcagcgtca ccagcctcac ggttacgagc cccggttatg
      841 ctgccaggga aatcccggta accgacgcga ctgctccgct ccgcataaga ctcatggcgt
      901 cacagaccag acttcctggt gtccagatcg tcgccaacaa gccgacacct tccaccgcga
      961 tcctcaccca gcaggatctc aatcgcgcga gcggactgag cctcgagaac tcgatcaaca
     1021 cggttcctgg cgtcttcatg cagtcgcgca caccgtgggg cggcgcccgc atcacgattc
     1081 gcggctacta cccgagcacg agcggaaaca gccccaactc caacggcctg ggatacaacg
     1141 tattcctgaa caacatcccg atcaccgatg cgtccggtgc gacgattctc gatgacattg
     1201 actattcaac acttggcaat gtcgaggtca tcaagggacc agcatcgagc cagtatggca
     1261 gccagattgg cggtacggtg cgattcacca ctgcgcgacc cgcgccgaac gaaaccagca
     1321 tcggccagca ggtcacgagc gggagctacg gtttgctccg caccaacacc accttccaga
     1381 cggccagcaa cacttcagat ctactgctga actacggtca ccagacctac gactcgttcc
     1441 gcccgcacag tgcatcgctg aaggattatc tcagcgcgac gggcgactac acggtcagcg
     1501 acaaccagac gctgtcggcg tatttctcct acaaccgctc cttcgaggag ctggcgggtg
     1561 agatcgacag cgctgatttc tacgcccgac gtccggtgag caacgcagcg tacctcgcca
     1621 acgactcgca tatccagatc acgagcttca tcaccggact gacagaccac tatcgtctca
     1681 ccgacgacat caccaaccag acgactgtct tcggaacggg ccgcacttac ggccagccat
     1741 tcgcgcacgg cttcaccgat gccaatcagt tcaccttcgg tgcgcgctcg gcgttcggct
     1801 attcaggtca gtggggtggt gtcgatgtta ccggtacgct gggcggaatg ctcgagcgca
     1861 ccaacatctc gaccaatggc gtgttcatcg ttcctgcacc gccatttccc tcgcggccca
     1921 cggatcagga gaactacgcc agcatcgcgt cgctgttcac ggaatggaac ttcgccctgc
     1981 cgagtcagtt caccctgaca gtcggtgcga gcctcaacaa gaacgaattc ggcatccgca
     2041 acatgctgaa gaacaatcag ctgtccgaca ccacgaccac gcaggtcaga tcattcgacg
     2101 cgttgatcgc tcctcgcgtc gcactcacca ggggattcgg caacaacgcg tcggtgtacg
     2161 cgagcgtcag ctccggttac acgccgccgt tgctgagcaa taccatcgac aacaccggcg
     2221 ccgtcgatct ttcgctcaag ccggagcgcg ccgtgcaata cgaagtcggc gcgcagggca
     2281 gccttctcgc gaatcgcctt aacggcgaga tctcgctgtt cgacatcgag aacagcgaca
     2341 agttgatatc gcaaaccgtg aactcgataa cattcacgac caacgcggga aagcagcgtg
     2401 accgcggtgc cgaagcatca ctcagttacc tcgtgatcga caagccgacg cagctcctgt
     2461 cgctcgtgcg tccgtgggcg tcctatacgt acacggattc caggttcatt gacttcagga
     2521 gcgacaacaa caatacgaca gccaccgtcg atttctcgga caacgccgtg ccgcgcgtgc
     2581 cgcgcaacgc gttcaatggc ggaatcgacc tggcctcgaa ccagggcgtc tacttcaaca
     2641 gcacgtatca gtatgtggac agggtcccgg tcacgttcga caactcgacc tacgtcaagt
     2701 catacgattt gctcggcgcc aagatcggtt acaaaaagca ggtcgacagg cactggtcgc
     2761 tcgacgcgtc cgccggcggt gacaacctgc tcggcagcac atactacagc ttcctgttcg
     2821 tcggaccgaa ctacgccggc ctcgcgcagg caccggacgg cggccatggc gacggataca
     2881 taatccccgg accctacaag gcgacagtct acggaaacct gacgctgcgc tacacgttct
     2941 gacgagccgt ggggactcgt cagaacgtgt aggacgcgga ttatccgcgc ctcgggaatc
     3001 catgcgtccg tcgtcattcc cgcgacggaa cgtcattccc gcgaaagcgg gaatccatct
     3061 gttgccgatc aactttgtgc cgtcaccgca cttgaagatc gataacatgg attcccgctt
     3121 tcgcgggaat gacgacatca aatccgcgtc gttcagggcc gccgcgtcgt atctgaatca
     3181 ttcagatccc ggcgcgtatc gggatccaga gcgcgctcag ccttgccgaa gtttttctgc
     3241 accttcccct tcagctgctc gctacgccct tcggcgtgca tgctcgagtt gtcaagcgca
     3301 tcgccgacat cgcccttgac cttgccggcc gcctccttca tggctccctt cgcctcgttc
     3361 gaggcacctt tcttgttcat ttcgcccatg tgcttacccc tccgttttta caggatgatg
     3421 ccgcttaacg aggcaaacgg tatgccgagt ggcgatcagc acccatgtat ctatcgtaca
     3481 ctcgtgttgg gattgcgctc ggcagagaat atctttgtat gctcctgtac tgactcccat
     3541 accacacctt gatcaagcgt tccagaatag agctgccact ccgcactatc gcgcgtgcag
     3601 caatcgccgt tgccgtcgcg attgcaatca cgattacggt cgctggttgc gccgatgtgc
     3661 cgacagcgtt cggaccaacg ccagcgcaag cgaaggcaaa cgcagatggg ttgttcggag
     3721 cgttcgtgaa acgtttcacg aacgtcgagc gcactccgcg gtacgctcgt gcaagggaaa
     3781 tgttgctgca ctacgccctc acgccatccg aagtttacgg cgacacttcg atctggacat
     3841 catccggccc cgatggatat cgcacgctct tcggcaacgc gacgttcagg gatggtcgct
     3901 acatcttcag caacactgtc accgacgatc ccgtgcagga gctcggagaa gggcgccaca
     3961 tcatgcgcct ccacaagctc agcaacgacg actacgactg gttcacgggt gtcgatttcg
     4021 tcgctggaac catcaaggca aacgatttcg ggaatgtcat aacgcattgg ctggcggcgt
     4081 cggaaggaca cagtggagcg gagctgcgcg cgggctatcg cacgcagttc ccccggacca
     4141 ccgatgcgtt gggcaagctg tactcgctcg acacgctcgt ctccacaaga gatgcggatg
     4201 gcgccaataa tctttacgcg gtagtgcaca tcacccccga cgggattcgc aacgattatc
     4261 cggcgtacgc ggccttcatg gcgaagtatg ccgacaaggt gaagctgcac ttcacgctac
     4321 aggattcgcg cgggaagtgg atcgaggtaa cgtcgcgcga cgattacgtc acggtccacc
     4381 tgcgatcgcg tgatggacac ttcgccccac tcgaaggccc gctccgtccc atgcctgaca
     4441 cgctcgccat gcgcgtggac tttaccgcga agatcaagct cttcacgatc ggcgtcgaac
     4501 acatgacggg cgagtgggtc aatattcaca ccgaccacga tcgcggctgg gctctacgct
     4561 ttacaaagga gccgggctgg gtacttccgc cagtcgtcgg ctatctcatc aagtcgccgc
     4621 tgcgccgtcc gttcgaaggg aacggcaccc aattccgctt caccatccac gatcaaccgg
     4681 gcgctcccac actcatgagc cggcgaggat cgactaccgt ccgcgaaagt gcgattcttc
     4741 gcttcatcgg caagctgggc ggcgctgcaa tgggtgactt cgtatcgaac gccgaggcgg
     4801 atgagaaccg cttcaatgtc gtcctgtaca gcgcactgaa ggcggacgtg gattcggcga
     4861 ttcgttaggt cgcagccgcg ccgtcaacat cttcatcgtc gaacgggatc accacttcca
     4921 tcccgtctcg tgcaacgata gcggacggaa acaccgatct cgcctccgcc gccagctcct
     4981 gcacgtcacg tgagtagcgc gacgagatgt gcgtgaggac caaccgcttc acacctgcct
     5041 tgtctgcgac agttgctgcc tcgcgagcgg tactgtggcc ggtctcgatc gcgagtggcg
     5101 cctcctcgtc cgcgaaggtc gcttcgtgaa tgagcagatc tgcgcctgcc gcgacctcgg
     5161 ctgtcgtgtc ggaaggccga gcgtcgccgg tgaatacgag ctttcgtccg gagcgcgtcg
     5221 gtccgacgag ctctgacgga tgcaccactc tgccatctgg tagcgttatt tcctgtccct
     5281 tgtgtatctg tccccagagc gggccttccg ggatccccat cgaccgcgcg agatcggggt
     5341 tgaatcgacc cagccttggg ctctccacga ttgccagccc aagagcgagc gcgccaccat
     5401 gctcgacgct gaacgggagg atggagtagc catcgcgctg gagcggctcg ccgggcgtca
     5461 tctcgacgta gttgatcggg aagtgctgct tgtcgcttcc gagagtaacg gcctggcgca
     5521 gcagccgctc cgatttcggc ggtccgaaga gcctcatggg ctcggtgcgg ccctgcagtg
     5581 ccatcgttcg gatcaggccc gtgacgccca gaatgtggtc agcatgcatg tgggtgaaaa
     5641 agatgtctcc cacgttgaat gacacgccgt agcgcatcat ctggcgctgg gtcccctcgc
     5701 cacaatcgaa aagaaatgtc tcgcccccgc ggcggatcgc cagcgacgtg acgttgcgct
     5761 cgacggtggg ccgagaggca gaggttccca gaaaacgaac acttagatcc attggcccaa
     5821 tatatcgaag ttgacttttg ggccgtttcg ccctatactt ggggaagtac cacccgtgtg
     5881 cgacgggtag ctacgccttt gtcgcaacca gaatttacgg tcgcggggct gtagctcagt
     5941 tggtagagcg ctgcaatcgc actgcagagg tcaggggttc gattcccctc agctccactt
     6001 ggatgttacc gcaggcttcg gcccgcgtct tgtaataaat agaatttgca ttgcccgccg
     6061 ccgatcggta ggacgtagag ttccaatgac ggcgcgcgtg gcagcctaac cccgggataa
     6121 ctcctggggt tttttattgg gcaggcacgg aggcctgccc ttactgagcc gggacccgta
     6181 cgggcaggcc ctttgggctt gcaccgaggg ccgcccttac atgcatcggc acccgtacgg
     6241 gcaggccccc gtgcctgccc tcagtacgac gaggataaat cccccgcgca gcccaacgcg
     6301 ggctcgcctc ctgctacgcc ggcgcgaagg
//
LOCUS       DATIMD010000487        11502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1644027, whole genome shotgun sequence.
ACCESSION   DATIMD010000487 DATIMD010000000
VERSION     DATIMD010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 11502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11502
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1644027"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(287..1033)
                     /locus_tag="VLI40_10795"
     CDS             complement(287..1033)
                     /locus_tag="VLI40_10795"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSU97709.1"
                     /translation="MSRRAAGRDGSSARDDSVARLFDGYAASYRDTVQRAISASGESV
                     EYFAALKLEHVKREMQNIDISRILDFGCGTGTTALRMAQHFPHAHVTGVDPSLESIGI
                     AKQAAGKGQSAEFVWNQGDELPFPPGSFDLTFTACVFHHIDRDEHARWAGELFRTLRP
                     GGSLMLFEHNPFNPLTRKVVRDCPFDAGVQLLYPRYTRRLLADAGFRIAAHRFYFFFP
                     RALRWLRGLERGLTSVPLGGQYYVRAIRPE"
     gene            complement(1088..2089)
                     /locus_tag="VLI40_10800"
     CDS             complement(1088..2089)
                     /locus_tag="VLI40_10800"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSU97710.1"
                     /translation="MISARVDLCIVVPAYNEERNLPILYGELAEVLDREGISFELLLV
                     DDGSRDRTADVIRSLAAAHDNVRALLLSRNFGHQAAVSVGLQHAFGRSVAVMDADLQD
                     RTTSVVALFRAWESGADVAYAVRRSRAENVFKRTAYRTFYRILARVADIPVQLDSGDF
                     CVMDAAFVAKMNALPERLRFVRGLRAWMGGKQVAVPVDRDARREGEPQYTFVKLVRLA
                     LDGIVSFSDAPLRIASLAGAIVSSFAFAGAIVVLVWKYLGLLPSGAGIASIALSVLFL
                     GGLQLLTIGILGEYVGRIFLEVKARPIGVVHESIRPRPSLISEEDNQASELDAVSTS"
     gene            3026..4666
                     /locus_tag="VLI40_10805"
     CDS             3026..4666
                     /locus_tag="VLI40_10805"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HSU97711.1"
                     /translation="MSIITAPRRKRFATHVAPLALSASLIASGLITSRKKAVWADEVF
                     SATFIGDSSIHRALHNLAAPADGAQPLYYSLGWLWAHVIGPSDTSLRMLSAACVVAGV
                     WLLWATLRVAFPPLVAATGLLLATATSELFVYHVSEIRFYGLLIGLVAAALYTYVRIA
                     LNPKPTRSELFLQAAVSSALVYCHLIGWIYSGVLLAAHVLIDYGQRRFRPRVYASVVV
                     GWATFIVWMPAFIRQIGLTKPHSNLRAPTLTELLTMYQFDARALPLLFIALVALVALT
                     RSQTGIAREGGFAADPSNLDWRWDSSRAAVFVGGVAVLTVPLITFVVSRLVTPMLLPR
                     YVVPSVLGIAVVLAEIVGWAGVSRTPRSPAGRFAWLLFLSAVTAYPVARAWGAPPTPV
                     PGRAELLRLVPPGIPIVVDESYYYHPLNYRNAMENHRVYYLLDWESAIDPANNGTVAV
                     MDRLLSEWVRAGYAKNVVPVPEFVCTHDQWVMLHTPGFLMFERAVARDSAFTLQTLGY
                     AEQHPIILVSRRPGISPRVCDSRNTVQWLPPTGPGSHR"
     gene            4694..5824
                     /locus_tag="VLI40_10810"
     CDS             4694..5824
                     /locus_tag="VLI40_10810"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HSU97712.1"
                     /translation="MERSQSAGAGRSYVPALDGIRGVAILLVIVYHCHELRAGWLGVD
                     LFFVLSGYLITGILVGATQQARYFRNFFARRALRIFPPYYAYLFVVLIALPRLGIAPV
                     PRESWWVWAYLTNVRVAMLGHWSAVPWYTLHLWSVAVEEQFYLVWPLAVWLIPSTVLR
                     RVCVWAILSALAFRLVLAWNGANYFALDDLTPSRMDALMVGAWFALAGLRPSRTATFA
                     AIAAIAAILLIGVHDDWPITLTVGFTFVAVAAGVVVTGVPIDPVLAPLMSWKPLRLAG
                     RYSYTAYLVHPLVIDRLRGGGLYTRRLAVLVVIVTFGIAAFSWKIFESPILRLKRFIP
                     DLPKAANPGQRARDLEAPDRANIPGAVGEARIEPLDYSRNSR"
     gene            5825..6700
                     /locus_tag="VLI40_10815"
     CDS             5825..6700
                     /locus_tag="VLI40_10815"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HSU97713.1"
                     /translation="MRKSCLRFFRAVLRRVIAIYPTRTLANALYHLFDAAHARSLSQL
                     FYRAGAHLFYGGGPGVTGRWVVRFAGRDVIMPLRSAHSEMDWEAAVSIAGHEVPVKNT
                     YREMLEARAIDQFIDVGANFGTHSLLFLAHGIPTVSFEPNAACHEYFLNACAVNGFTP
                     HLQPVALGDIEGSIDFAYPDGQTWLGSCDPAVIEQLHGTIIRRTVPIERLDHFATEFR
                     ATPPGRTLLKIDAEGLELPILRGAGHILETLKPCILYEARDDASRAAVKALLTKFGYS
                     FQAVSDQDFLAVPAR"
     gene            complement(6776..7726)
                     /locus_tag="VLI40_10820"
     CDS             complement(6776..7726)
                     /locus_tag="VLI40_10820"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSU97714.1"
                     /translation="MTRPLVSIIMPVFNGERWLSEAIESVLRQSWGRLELIIVDDGST
                     DESVRIAEHFASRSVVVLRQANQGASVARNAGLALAQGDFIQYLDADDLLDPRKIELQ
                     IGALSDAPGQVATCAWARLYDGIGGAQFEPSVLWRNFAPVDFLVAAYASMHFMPNHAW
                     LTPRAISDRAGTWPPMRARNDDAEYFAKVVLQSSGVRFVPEARAYYRSGHSGLSAASD
                     REALEGYLWTLDQIADRLLAAEDSTRTRSALAASIDHFVSSVEVAAPDLARSAEQRVH
                     RLVGRRFVMPNDGLSMRVLSRLLGRSGARALRRALRRRVR"
     gene            8023..9708
                     /locus_tag="VLI40_10825"
     CDS             8023..9708
                     /locus_tag="VLI40_10825"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HSU97715.1"
                     /translation="MSVSSVTTAADDPQSAVNPGSSQLRSAWLYRIALLAIVIVACGR
                     VAATYRVFSETYDESLHIAAGLQWLGGGAYTYEEKQPPLAQVAAAVGPFLDGQRSHPE
                     LGLAGDEHAIMYDGPGGLLRTLTVSRLGSLPFLVLGILVVAAWGRRVGGDAAGLIAAL
                     LFSTNPTVLGHAGLANTDVPHATTLAAAFFAGILWLDRPTLRQSIWLGIAVAAAILCK
                     LSALPFLGLAGAAIVVMRWMLHRRHGQPASPFSRRAASTLLVATGVAVIVVLAGYRFS
                     VGPVALPRVGGHITVFAPEFFDGLRDVYQHNHNGNQTFFLGEVGTRGWWYYFPVMLAV
                     KTPLPFLILAVAGAVAAEVSLRSRRALDPISALICAGAVLLFSMTAHINLGVRHVLGA
                     VPPLAVVAAYGAVELWRARSVVSQAMVRAAVSLLILFQVGESIAVHPDYLAYFNVLAG
                     ARPEQISVGADLDWGQDLFRLRDELRKRKVDSLSIAYFGAADVSQYGIPNARPLRPGR
                     PVSGWIALSEGRKVGGTFEWLSERFTPVTRVGKSILLYYVPADSLRPARPANR"
     gene            9713..10873
                     /locus_tag="VLI40_10830"
     CDS             9713..10873
                     /locus_tag="VLI40_10830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97716.1"
                     /translation="MVPNVARARLEASTAGEGAVRTGLPSWWGVAPPSHRELIAAGVT
                     AVAIRVVFACALMLGTHTSLHGWAMLRDGESYLRVAAAVRGAMDVPNAFDWRVFPGYP
                     LAIGAVGSIGIPLSLSALLLTWGGAGVAAAAGGALFNRRDVAWALAVLLPGYLMYTSI
                     AMSEGLLLGMTTVGLLMATRGRVAIGGLLLGYAGLIRPVACFAVIAFGLWSLHRREIR
                     NALVCGVTALVVVATGWLTWRGWSHGAAQSVALYNQAYGNRLLEWPFEALIATPLQSP
                     VAAWKVAYIYAHVLLVLVACAFAVRRLLLELPRPHTQGSMGVLAGAWLLGNTMFAVCV
                     GQYWGFHEFHRFIVPALPALYVVLEPLMPRERVWWVAASIASLAMAAFGIAC"
     gene            10958..11332
                     /locus_tag="VLI40_10835"
     CDS             10958..11332
                     /locus_tag="VLI40_10835"
                     /inference="COORDINATES: protein motif:HMM:TIGR00252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HSU97717.1"
                     /translation="MSTATQALGEVGERIAERWLTRAGWKILNRRFRNGHRDIDLVAE
                     REGIVAFVEVKARRDDHFGGPIEAVNWQKRIELTRSARVWIDRHGRAGEAYRFDVIGV
                     IVSDDRVRLRHVPDAFSLASRG"
BASE COUNT         1936 a         3608 c         3634 g         2324 t
ORIGIN      
        1 tcgggtatgg tcgcgcggcg cggatcatcg accagctgca ggaggcaggg atcctcgggc
       61 cgtcggatgg gccaaggggc agggacgtga tcgcggggct ggaggatctg gagagaattt
      121 gcggagcgtg agtgacggca acaaatcgct ctgcggccgg atccgcgact ggactcagcg
      181 ccacgaggcg cggagaagaa acccgagtcc gggaagggga tgctggtacc cgatggcggg
      241 ggtcgcgaag ccagggagag cctgtcgtgg cgcggtgatt cccgcgctat tctggtcgaa
      301 tcgcgcgaac gtagtattga cctcccaggg gcaccgacgt gaggccgcgc tccaaacccc
      361 ggagccatcg cagagcccgg ggaaagaaga agtagaatcg gtgtgcggcg atccggaagc
      421 ctgcgtcagc gagtaaccgg cgcgtatagc gtgggtacaa gagttgaact cctgcatcaa
      481 acgggcagtc gcgcacgacc tttcgagtca acgggttgaa tggattgtgc tcgaacagca
      541 tcagcgaccc gccgggccgg agagtccgaa acaattcgcc cgcccaccgc gcgtgctcat
      601 cacgatcgat atgatgaaac acgcacgcgg tgaatgtcag atcgaagctc ccgggcggga
      661 acggcaactc gtcgccttga ttccatacga actcggctga ttgcccttta ccagcagcct
      721 gcttggcgat gccgatactc tcgagagagg ggtcaacgcc cgtcacatgt gcgtgaggga
      781 agtgctgcgc cattcggagt gcagtcgtcc ctgtaccgca gccgaagtcc agaatccgcg
      841 agatatcgat gttctgcatc tcgcgcttca cgtgttcaag ctttagcgca gcaaagtact
      901 cgacggattc gccgctcgct gagatcgcac gctgaactgt atcgcgatac gatgcggcgt
      961 aaccgtcaaa aaggcgggca accgaatcgt cgcgcgccga gcttccatca cgaccggcgg
     1021 cgcgccgact cattctctcg agcactccat tcaggcgcgc cacagtcagc cgcgcaacgt
     1081 gttcggctca cgacgtcgaa accgcatcta attcgctcgc ctggttgtct tcctcgctga
     1141 tgagcgaagg acgcggcctt atggactcgt gcacgacccc gataggccgt gctttcacct
     1201 cgagaaaaat tcggcccacg tactcgccca gaattccaat cgtcagcagc tgaagtccgc
     1261 caaggaaaag taccgacagc gcgattgacg cgatgccggc gcccgatgga agcaacccga
     1321 gatacttcca cacgagcacc acgatcgcgc ccgcgaacgc gaaactcgac acgatcgcgc
     1381 ccgcgagcga cgcgatccga agcggggcgt cggaaaacga gacgatgccg tcaagcgcca
     1441 agcggacaag tttgacgaac gtgtattgag gttcgccttc acgccgcgcg tcccgatcaa
     1501 ccgggaccgc gacctgcttt ccccccatcc aggcgcggag tccgcgcacg aaccgcagtc
     1561 gttccggaag cgcattcatc ttcgcaacga aggcagcgtc catcacgcag aagtcgcctg
     1621 agtcgagctg caccgggatg tctgcaaccc ttgccagaat ccgatagaac gtgcggtagg
     1681 cggtgcgctt gaaaacgttc tcggcacgcg aacgcctgac ggcgtacgcc acgtcggcgc
     1741 cactctccca agcgcggaag agcgcgacaa cactcgtggt ccgatcctga aggtcggcat
     1801 ccattacggc cacgctcctg ccgaacgcgt gctgtagtcc cacggaaacg gcggcttgat
     1861 ggccgaagtt gcgacttagc aggagcgctc gcacgttgtc gtgcgctgct gccaacgatc
     1921 ggatcacatc tgcggtccga tcgcggctgc cgtcgtccac cagcagcaat tcgaagctga
     1981 tgccttccct gtcgagcacc tccgcaagct ccccatagag gatgggtagg tttcgctcct
     2041 cattgtatgc cggaacaacg atgcacaggt cgactctcgc ggatatcata agggccggtg
     2101 atcagcgatc ttcagatcca ttttggtatt ttgcagactc gaaaaaacgt gcaaggaaaa
     2161 gcacgatcca tgccgtccat cgcggctgga ttcgcagacc gatgtcgacg gggctcaggc
     2221 ttcacgtgcg cgatacgacg ctcgcctcca tcgagacgct gacggcgagt ggacgttgtc
     2281 agccagcagg cggagtgcga cgctccaacg accggtacga tctctctcgc atcgcttcac
     2341 cacgtaagcc cggaccgatc ataagatacc tgtcgcgggc agtcgaccgc gacgggcctc
     2401 acgaggttgg actctgccgc tccgcgtgtt tcaaacgaaa acgagcgcgc aggcaacacg
     2461 ggtagacggg ctgcccaaga tatgaaagta taccttaatt tgcgtgcgtt gggagcgatc
     2521 ccgagcccgc tcagcatctg tcggatccgg ggatcagtta gccaggccgc aagccttcgt
     2581 gaaccagggg tggagacccg cgacacgcag tggcatgggt tgctccggct acgacgattg
     2641 atgttgcttt gactcgcgcc cggcgacgct gaccgctcgg aatcgtgcgg tatcgttgca
     2701 ggcagcgcgc ctgccgtaga taccaatcga tggcggtggg ggccgcaagg gtgggcaggt
     2761 ttgtgcggcc aggaaaactc gtcccgcaaa gacgtcccgg agcggccatc gcgggccgaa
     2821 ccggatgatt acagctggcg ggccgggccc cgttcctgca acgaccgccg ggagaattgc
     2881 cgggctcgat ccggatcaac cttttcgcgc ggcgactgtt gctggctgcc ggttcgggcg
     2941 cgccctggtg cgactgcctg gaactgcgtc tacagggtca tggctcggct gccgactgcg
     3001 acagtcatcc aatcacttcg aactagtgtc gattatcact gctccacgcc gaaagcgatt
     3061 cgctacgcac gtcgcaccgc ttgctctgtc ggcgtcactg atcgccagtg gtctgatcac
     3121 atcccggaag aaggcagtgt gggctgacga agtgttctcg gcgacgttca tcggggactc
     3181 ttcgattcat cgcgctctgc acaacttggc cgcgccggcg gacggcgcac agcccctgta
     3241 ctactcactc ggttggctct gggcacacgt catcgggccg agtgatacga gccttcgaat
     3301 gctctcggca gcatgcgtcg tcgctggcgt ttggctgcta tgggcgacgt tgcgcgttgc
     3361 atttccgccg ctcgttgccg cgacgggcct cttgctcgct acggcgacgt ccgagctctt
     3421 cgtttaccac gtctcggaga tccggttcta cgggttgctc attgggttgg tggccgcagc
     3481 gctctacacc tatgtccgga ttgcactgaa tccgaaacct actcgctccg aactgttcct
     3541 tcaggcggcc gtttcgagtg cactcgttta ctgccatctg ataggctgga tatacagtgg
     3601 agtgctcctg gcagctcacg tcttgatcga ctacgggcaa cgacgcttca ggccgcgggt
     3661 ttacgcgtcg gtagtggttg gatgggcgac gttcatcgtt tggatgcctg ccttcattcg
     3721 gcaaatcggt ttgacgaagc cacacagcaa ccttcgcgct ccgacgctca ctgagcttct
     3781 cacgatgtat cagttcgacg cacgggcgct accgctgctg ttcatcgcgc tggttgcgtt
     3841 ggtcgcactg acacggagcc agaccggcat cgcgcgcgaa ggcggtttcg cagccgatcc
     3901 gtcgaacctg gattggcgct gggactcgag cagggcggcg gtattcgtgg gcggggtggc
     3961 agtcctgacg gtgcctctca tcacgttcgt cgtatcgcgg ctcgtgactc cgatgcttct
     4021 cccccgttat gttgtgccct cagttctcgg tatcgcggtc gttctcgcgg agatcgtcgg
     4081 ctgggctggc gtttcacgta cgcccaggtc gcctgcgggg cgcttcgcgt ggctactatt
     4141 cctttcggcg gtcaccgcat acccggtcgc tcgggcttgg ggagcgcccc caacgcccgt
     4201 tccgggacga gccgagctcc ttcgtctggt tcctcccggc atcccgatcg tggttgacga
     4261 gtcctattac tatcacccgc tgaattatcg caacgcgatg gaaaatcatc gcgtctatta
     4321 tctcctcgac tgggagagtg cgatcgatcc ggcgaacaac gggacggtcg ccgtgatgga
     4381 ccgcctcctg agcgaatggg tgcgcgccgg ctacgccaag aacgttgttc cggtccccga
     4441 gttcgtgtgc acacatgacc agtgggtgat gttacacacg cccggcttcc tgatgttcga
     4501 gcgagccgtg gctcgcgatt ctgcgttcac gctgcaaaca ctcggctacg cagaacagca
     4561 tccgatcatc ttggtaagcc gtcggccagg catcagtccg cgggtctgcg acagccgcaa
     4621 cacggtgcag tggctgccgc ccacggggcc cggatcgcat cgatgaccga caactcatcg
     4681 atttgacgcg agggtggaac gatcacaatc agcgggggcc ggacgcagct acgttccggc
     4741 gctcgacggt attcgcggcg tcgcgattct ccttgtcatc gtctatcact gccatgagtt
     4801 gcgtgctggc tggttgggcg tcgatctctt cttcgtcctc tccggctatc tgatcaccgg
     4861 cattctggtt ggcgccacgc aacaagcccg ctacttccga aacttttttg cgcggcgcgc
     4921 acttcgtatc tttccgcctt actacgcata tcttttcgtc gtcctgatag cgctcccgcg
     4981 acttggcatc gctcccgtgc cgcgtgagtc atggtgggtt tgggcatacc ttacgaatgt
     5041 gcgtgttgca atgttggggc actggagtgc ggtgccatgg tacacgctgc atctctggtc
     5101 ggtcgctgtg gaggaacagt tttacctggt ctggccactc gcggtttggt tgatcccatc
     5161 aaccgttctt cggcgcgtgt gcgtctgggc gatcctttct gcactcgcct tcaggctcgt
     5221 cctcgcctgg aacggcgcca actatttcgc actggacgac ctgaccccga gtcgcatgga
     5281 tgcgttgatg gtcggcgcgt ggtttgcact cgcagggcta cggccttcgc gcacagcgac
     5341 gttcgcagcc attgctgcga tagcggcgat cctgctcatc ggtgtacacg atgattggcc
     5401 gatcaccttg acggtgggtt tcacgttcgt cgcggtcgcg gccggcgtgg tcgttaccgg
     5461 cgtgccgatc gatccggtgc tcgcaccctt gatgtcgtgg aaaccgctcc gactcgcggg
     5521 gcggtacagc tataccgcat accttgtcca cccgttggtg attgacaggt tacgcggtgg
     5581 agggctctat actcgtcggc tcgccgtgct cgtcgtcatc gtgacgtttg gaatagcggc
     5641 attctcctgg aagatcttcg agtcgccgat tttgcgactt aagcgcttca tcccagatct
     5701 cccgaaggct gccaacccgg gccaacgcgc gcgcgacctc gaagctccgg atcgcgcaaa
     5761 tattcccggc gccgtcggtg aggctcggat cgagccgctc gattattcac gcaattcccg
     5821 gtagatgcga aagagctgcc ttcgtttttt ccgtgcagtg ctcaggcgcg taatcgcgat
     5881 atacccgacg cgaaccctgg ctaatgccct gtatcacctc ttcgacgcag cgcacgcacg
     5941 gagtctctcc cagctgttct accgggcagg ggcacatctt ttctacggcg gtggccccgg
     6001 cgtcaccggc cggtgggtcg ttcggttcgc ggggcgcgac gtcatcatgc cgttgcgttc
     6061 ggcgcattcc gaaatggact gggaagcggc cgtttcgatc gccgggcacg aagtgccagt
     6121 gaagaacacg tatcgcgaga tgctcgaagc gcgggccatc gatcagttca tcgatgtcgg
     6181 cgcgaacttc ggcacccact cgctgttgtt ccttgcacat ggcatcccca ccgtctcgtt
     6241 cgagccgaac gcggcctgcc atgagtattt tctgaacgcg tgcgcagtga atgggtttac
     6301 cccgcacctg caaccggtag cgctcggcga tatcgagggt tcgatcgact tcgcgtaccc
     6361 cgacggacag acctggctcg ggtcttgtga ccctgcagtg atcgaacaac tccacgggac
     6421 gatcattcgc agaacggtcc cgatcgagcg actcgaccac ttcgcgacgg aatttcgcgc
     6481 gaccccaccc ggacgtaccc tcctcaagat cgatgcggag gggttggagc tgcctattct
     6541 acgcggggcg gggcacatcc tcgagacgct gaagccttgc atcttgtacg aggcgcgcga
     6601 tgacgcctcg cgcgccgcag tgaaggcact tctgacgaaa ttcgggtatt ctttccaggc
     6661 cgtgagcgat caggattttc tcgctgttcc tgcgcggtga attggggggc gcttcggtct
     6721 ggcgccggcg gtgcgcggcc gcggcgacga acatcattca ggccgccagg tgcggttacc
     6781 tcacgcggcg gcgaagtgcc ctgcgcagcg cgcgcgcacc actgcgaccg agcaaccggc
     6841 tgaggacgcg catcgagagc ccgtcgttag gcatgacgaa ccgcctcccg acaagcctgt
     6901 gtacgcgctg ctcggcgctc ctcgcaagat caggggccgc gacttcgacg gatgagacga
     6961 agtgatcgat cgacgccgcg agggccgacc gggtgcgcgt gctatcctcg gctgctaaca
     7021 gccggtcagc gatctggtcg agggtccaaa gatatccttc cagtgcctcc cgatcgctcg
     7081 cggcgctcaa ccctgaatgc ccggatcgat aatatgctcg cgcttcgggg acgaatcgca
     7141 caccgctact ctggaggacg actttcgcaa aatattcagc gtcgtcgttc cgcgcccgca
     7201 tcggcggcca cgtgcccgca cggtcggata ttgctcgcgg tgtgagccag gcatggtttg
     7261 gcatgaagtg catgctggcg tacgctgcga cgaggaagtc gaccggggcg aagttcctcc
     7321 agagcacgga aggctcaaat tgtgcgccgc cgatcccgtc gtacaatcgc gcccacgcac
     7381 atgtcgcaac ctgacccggg gcgtccgaga gcgcgccgat ctggagctcg atcttgcggg
     7441 ggtcgagcaa atcatcggcg tcgagatact ggataaaatc accctgcgcg agcgcgagtc
     7501 cggcgttgcg cgccacgctg gctccctgat ttgcctggcg cagcacgacg acactccggc
     7561 tggcgaagtg ttcggctatc ctcacactct catccgtcga tccatcgtca acgatgatga
     7621 gctcgagcct tccccagctt tgccgaagga ccgattcgat ggcttcgctg agccagcgtt
     7681 cgccgttaaa aacaggcatt atgatcgaca cgagtggtcg agtcatccgc gccactcgaa
     7741 gctgtcggtt tgattcatgt cggcaaggtc gcgtctcgcg gcagctcgtc ggcggttgag
     7801 cgcaagcggt cggtgttgtc tatgaaagtt acctggaacc gaaatgggtc tgagcaaggt
     7861 gcggagttcc gctcgcagcg ctcccttggc gcgaacttcg catacgggcg cgtgaagccg
     7921 cgccagtccg gtcgataccg cataagcgac tgacgttcga ccgattcgtc gtcccatctg
     7981 ctgccaccga aaacgcctgg tggctggtac aatctatagc tgatgtctgt ttcgagtgtc
     8041 accacggccg ctgacgaccc gcaatcagcg gttaatcccg gttcaagcca gctgcgctcc
     8101 gcttggcttt accgaatagc gctgctcgcg attgtcatcg tcgcgtgcgg ccgagtcgct
     8161 gcgacgtatc gggtgttcag cgagacctac gacgaaagcc tgcacatcgc ggcgggtttg
     8221 cagtggctcg ggggcggcgc gtacacgtac gaggagaagc agccaccact cgcgcaggtt
     8281 gccgccgcgg tcgggccgtt tctcgacggc cagcgctcgc atcccgaact tgggttggcc
     8341 ggcgacgagc acgcgatcat gtatgacggt ccgggtggac tgcttcggac gctgacggtc
     8401 tcgcggctcg ggtctctccc gtttctcgtg ctcgggatac tggtcgtcgc ggcttggggt
     8461 cgtcgcgtcg gaggcgatgc ggcgggactc atcgccgcgc tcttgttctc gaccaacccg
     8521 acggtgctcg ggcacgcggg gctcgcgaac acagacgtgc cgcacgcgac cacgctcgcc
     8581 gccgcgttct ttgcgggcat tctctggctc gatcgcccca cgttgcggca aagcatctgg
     8641 ctcggcatcg ccgtcgccgc ggcgatcctg tgcaagctct ctgcgctccc ctttctcggg
     8701 cttgccggcg ccgcgatcgt cgtaatgcgc tggatgcttc accgtcgtca cggacagcca
     8761 gcgtcgccgt tctcgcgtcg agccgcatcc acgctcctcg tcgccaccgg agtcgccgtc
     8821 atcgtggtgc tcgcgggcta tcgtttttcg gtaggcccgg ttgcacttcc cagggtcggg
     8881 ggacacatca ccgtcttcgc tcctgaattc ttcgacgggc tgcgcgacgt ctatcagcac
     8941 aaccacaacg gcaaccagac cttcttcctc ggcgaggtcg gaacacgcgg atggtggtac
     9001 tacttcccgg tgatgctcgc ggtgaagacg ccgctgccgt ttctgatcct cgcggtcgct
     9061 ggcgcagtcg ccgccgaggt gtcgcttcgg tcgcggcgcg ccctcgatcc catcagcgcg
     9121 ttgatttgcg ctggtgcggt cctcctgttc tcgatgacgg cgcatatcaa cctcggtgtt
     9181 cgccacgtgc tcggcgccgt tccgcctctc gcagtggtag ctgcctatgg tgccgtcgag
     9241 ctatggcggg cgcgtagcgt cgtgtcgcag gcgatggttc gagcggccgt gtcgctgctc
     9301 atcctcttcc aggtcggcga gtcgatcgcc gtccatccgg attacctcgc ctacttcaac
     9361 gtgctcgccg gcgctcgccc tgagcagatc agcgtcggcg cggacctcga ttggggacag
     9421 gacctcttcc ggctgcgcga tgagctccgc aagcgaaaag tagactcgct gtcgatcgcg
     9481 tatttcggtg cggcggacgt gagccaatac gggatcccga acgcgcggcc gctccgtccc
     9541 ggccgccccg tttctggctg gattgcgctt agcgaggggc ggaaggtggg cgggaccttc
     9601 gagtggttat cggagcgatt cactcccgtc acgcgggtgg gaaagagcat ccttctctac
     9661 tacgtgccgg ccgattcgct ccggccggcg cggccagcca atcgctgagc agatggtgcc
     9721 taacgtcgca cgcgcgcggc tggaagcatc gaccgcgggc gagggggccg tccgtaccgg
     9781 ccttcccagc tggtggggcg tcgctccccc cagtcaccga gagctgatcg ccgctggcgt
     9841 caccgcggtc gcgatccggg tcgtctttgc gtgcgcgctc atgctcggca cgcacacgtc
     9901 gcttcatggc tgggcgatgc tgcgcgatgg cgagagctac ctgcgggtcg cggcggcggt
     9961 acgcggagcg atggacgtgc ctaacgcgtt cgattggcgc gtctttccgg gctatccact
    10021 ggcgatcggc gccgtcggtt cgatcgggat tccgctttcg ctctcggcgc tcttgctgac
    10081 gtgggggggc gcgggggtcg ccgccgcagc gggcggggcg ctgttcaatc gtcgcgatgt
    10141 tgcgtgggcg cttgcagtgc tcctccccgg ctacctgatg tacacgtcca tcgccatgtc
    10201 cgagggattg ttgctcggga tgaccactgt gggactcttg atggcgacac gcggccgcgt
    10261 cgcgatcggc gggttgctcc ttggttacgc aggactcatc cggcccgtcg cgtgcttcgc
    10321 ggtgatcgca ttcgggctct ggtcgctgca ccgtcgagag atacggaatg cactcgtgtg
    10381 cggcgtgacg gcgctggtcg tcgtggctac ggggtggctg acatggcggg gatggtccca
    10441 tggcgctgcg cagagtgttg cattgtacaa tcaggcgtac ggcaaccggt tgctcgaatg
    10501 gcccttcgaa gcgctcatcg cgaccccgct gcagtcgcca gttgccgcgt ggaaggtcgc
    10561 gtacatctac gcgcacgtgc tactcgtgct cgttgcctgc gcattcgcgg tccggcgcct
    10621 cctgctcgaa ttgccgcggc cacatactca ggggagcatg ggggtgctcg ctggggcctg
    10681 gctcctcggg aacacgatgt tcgccgtctg cgtcggccag tactggggct tccacgagtt
    10741 ccatcgcttc atcgtccccg ctctcccggc gctctatgtc gtgctcgagc cgctcatgcc
    10801 gcgcgagcgc gtctggtggg tcgcggcatc gatcgcatcc ttggcgatgg cggcattcgg
    10861 aatcgcctgc tagtcgacgt gaatcccgcg cgcggttttg tgttcggctg cggaacttcg
    10921 atgatgtggc cttcgccgcg cgatgtaacc tccgcccatg tcaacggcca cgcaggcctt
    10981 gggcgaagtg ggagaacgga tcgcggagcg atggctcacc cgcgctggct ggaagatcct
    11041 caaccggcgc ttccggaacg gccaccgcga catcgacctg gtcgctgagc gggaaggcat
    11101 cgtcgcgttc gtcgaggtca aggcccggcg cgacgatcat ttcggtggcc cgatcgaggc
    11161 ggtcaactgg cagaagcgca tcgagctcac ccgttcggcg cgcgtctgga tcgatcgcca
    11221 cgggcgggcg ggggaggcgt accgattcga cgtcatcggg gtaatcgtaa gcgacgatcg
    11281 ggtcaggctc cgccacgtcc cggacgcgtt cagcctcgct tcgcggggtt gagaaatcgc
    11341 aagcgaaaag cttgaacttc tgaccgtttc ttcgtatttt gttcggtata tcggacgcac
    11401 ctcggcgccc ggtagatttc agcctgcgat agccacggtt tggacgagaa acagagagga
    11461 tcgagagaca acatggcaac ggcaagtgta tcggacgaca ag
//
LOCUS       DATIMD010000488         4361 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2506443, whole genome shotgun sequence.
ACCESSION   DATIMD010000488 DATIMD010000000
VERSION     DATIMD010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4361
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2506443"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..544
                     /locus_tag="VLI40_10840"
     CDS             134..544
                     /locus_tag="VLI40_10840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HSU97718.1"
                     /translation="MRPIRVLVAKPGLDGHDRGAKVVAAALRDAGMEVIYTGLHQTPE
                     MIATAAIQEDVDVVGLSILSGAHMTLIPRVLDLLHADGRDDILVTGGGIIPREDMDAL
                     EARGTGKLFGPGTPTSELVDYIHDWFEARESQTA"
     gene            541..2136
                     /locus_tag="VLI40_10845"
     CDS             541..2136
                     /locus_tag="VLI40_10845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HSU97719.1"
                     /translation="MTSRLQSLDADLRELENKLEQGGGARKIEKLHAQGKLSARERVK
                     LLCDPDSTFLEIGLLVAYDQYDGQAPSAGVVTGLAVVDGREVVVVANDPTVKAGSWWP
                     ETIKKILRAQEIAMRCTIPIVYLVDSAGVNLPYQGGVFPGQFGASRIFYYNSIMRRYL
                     RIPQIAAVMGQCIAGGAYLPALSDVILMVKGTSFMGLGGPNLVKGATGQVIDSETLGG
                     ADTHTRISGVAHYAVDDDPTCIAKIRELISRLPKPAVAAPARRATTDAAIAGLLPADH
                     RMSYDMHALLRLIVDDGALDEFQGELAKEVICGDARIGGIPVAVIANQRGLVKGRAGE
                     KPRFGGIIYAESAEKMAYFIDRCDRQRIPILFVQDVSGFMVGPEAEHEGIIRAGARLV
                     EAMATTRVPKIVLTVNHASGAGYYAMAAQGFDPDFVFTWPTGRMGVMEGEAAIQAVHG
                     PAIDAARKAGGGLNDEVSAVVDEMRADYEHQLDARYAAARGYVDAIIHPEDTRAAIVT
                     ALTASLNNPGPHLGPFVLPTQIA"
     gene            2144..3502
                     /locus_tag="VLI40_10850"
     CDS             2144..3502
                     /locus_tag="VLI40_10850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyclic terpene utilization AtuA family protein"
                     /protein_id="HSU97720.1"
                     /translation="MTERIVRVASGQGFWGDSLDAPRQQVENGPIDYLMLDYLAEVTM
                     SILQKQKERDPAMGYARDFVGAMDSVLDAVTDRGVRVIANAGGVNPPACATAIQGVAK
                     KRGKSIRIGVVTGDDLLPRLNELVEQGHALAHMETGEPLETVRDRVLSANAYIGSKPI
                     VEALSRKAQVVITGRSTDTALTMAPIRFEYGWADTDYDRLAAGIVAGHILECGAQSSG
                     GNCQYDWRNIPDLANVGYPIADAYEDGSFVVTKHPNTGGRVSVQSVSEQLVYEMGDPH
                     GYITPDVIADFSTIRLEDAGPDRVRVFGIKGYAPTDKLKVSIAYRSGYKAVGTLVYSW
                     PDALEKAQLADRILRERLERLGLRFDEILTEFVGASATHGPLAGKTGSDAPEIQLRVG
                     VRSDDRATVERFTREIAPLVLNGPPGVTGFAGGRPKVEEIVAYWPALIDKTVVQTHVE
                     IV"
     gene            3502..3852
                     /locus_tag="VLI40_10855"
     CDS             3502..3852
                     /locus_tag="VLI40_10855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97721.1"
                     /translation="MKVRLLDIAHARSGDKGDTANVGIIANRPEWYPLMSRELTQARV
                     ARHFAGMINGDVDRFELPNLNALNFLLHGALGGGGTLSLKTDAQGKVYSTALLRMVLD
                     VPDAEAHALGLPSA"
     gene            3849..>4361
                     /locus_tag="VLI40_10860"
     CDS             3849..>4361
                     /locus_tag="VLI40_10860"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HSU97722.1"
                     /translation="MNRIRVESDGALAHITLARPEKRNALDHETTHELLQAFTSCAQH
                     TGTHAVLLTADGADFCAGADLTELAGMLGATAEEHYADAEALGRVFIAMREMPKPVIA
                     AVRGRALAGGAGLATAADIVIAHEDAQFGYPEVLVGFVPAMVMTMLRRSVGEKRAYDL
                     VASGRRVTASE"
BASE COUNT          843 a         1323 c         1418 g          777 t
ORIGIN      
        1 cgccaatctc atgcccttca tactcgactg cgcgcgcgcc tactgtacgc tgtacgagat
       61 acgcgccgcc atggaagaag tatttggtgc gtatcgcgag cccgtgttct tctaaccctt
      121 gcaatcgaaa gagatgcgcc ctatccgagt gctagtcgcc aaaccgggac tggacggcca
      181 cgaccgtggc gcgaaagttg tcgcggccgc gctgcgcgac gcggggatgg aggtcatcta
      241 caccggcctg catcagactc cggaaatgat cgccacggcg gcgattcagg aagatgtcga
      301 tgtggtcgga ctttccatcc tgagcggtgc gcacatgacg ctcattccgc gcgttctgga
      361 tctgctgcat gctgacggac gcgatgacat cctggtgact ggtggcggga tcattccgcg
      421 cgaagacatg gatgcgctcg aggctcgcgg caccggcaag ctattcggac ccggaacgcc
      481 aaccagcgag ctcgtggatt acatccacga ctggttcgag gcccgcgaaa gccagacagc
      541 gtgacctcgc ggctacagtc gctggacgcc gatcttcggg agctcgagaa caaactcgag
      601 cagggcggcg gcgcaaggaa aatcgagaag ctgcacgcgc agggcaaatt atccgcgcgc
      661 gagcgtgtga agctgctctg cgatccggac agcacttttc tggagatcgg cctgctcgta
      721 gcgtacgacc agtacgatgg tcaggcacca tcggcgggcg ttgtaaccgg cctggcagta
      781 gtagacggcc gcgaggtcgt cgtcgtcgcg aatgatccga cggtgaaggc cgggtcatgg
      841 tggccggaga ccataaagaa gattctgcgc gcgcaggaaa tcgcgatgcg ctgcacgatc
      901 ccgatcgtgt atctggtcga ttccgcaggg gtgaacctgc cgtatcaggg cggagtattt
      961 ccgggccagt tcggcgcgag tcgcatcttc tattacaact cgatcatgcg tcgctacctg
     1021 cgaatcccgc agatcgcagc ggtgatgggc cagtgcatcg caggcggcgc atatctcccc
     1081 gcattgtccg acgtcattct catggtgaag ggaacgtcgt tcatgggact tggcggcccc
     1141 aacctcgtca agggcgcgac cggtcaggtg atcgacagcg agacgctcgg cggcgcggac
     1201 acgcataccc gcataagcgg cgtcgcgcac tacgcggtgg atgacgaccc tacgtgcatc
     1261 gcaaagattc gcgagctgat ctcgcgcctc ccaaaacccg cggtcgcggc gcccgccaga
     1321 cgcgcaacga cggacgcggc catcgcggga ctcctgccag cggatcatcg catgtcgtac
     1381 gacatgcacg ccctgctcag gctcatcgtc gatgacggcg cgctggatga atttcagggt
     1441 gagctggcaa aggaagtgat ctgcggtgac gcgcgcatcg gcggaattcc cgtcgccgtc
     1501 atcgcgaacc agcggggact cgtgaagggc cgcgcggggg agaagccgcg gttcggcgga
     1561 atcatctatg ccgagtccgc ggagaagatg gcttacttca tcgaccgctg cgatcggcag
     1621 cgcattccga ttctgttcgt gcaggacgtg tccggtttca tggtcggacc cgaagccgag
     1681 catgaaggaa tcattcgcgc cggagcccgg ctcgtcgaag cgatggcgac gacacgggtg
     1741 ccgaagatcg ttctaacggt caatcatgcg tcaggtgcag gttactacgc catggcggcg
     1801 cagggcttcg atccggattt cgtcttcacg tggccaaccg ggcgcatggg agtgatggaa
     1861 ggcgaggctg cgatccaggc ggtgcacgga cctgcaatcg atgcggcgcg caaggccggc
     1921 ggcggactga acgacgaggt atccgcggtc gtcgacgaga tgcgcgccga ttacgagcat
     1981 cagctcgatg cacggtacgc tgccgcgcgc ggatatgtcg acgcgattat tcatcctgaa
     2041 gacacccgcg ccgcaatcgt cacggctctc accgcgtcac tcaacaatcc cggtccgcac
     2101 ctcggaccat tcgttcttcc aacgcaaata gcctgatcat ccaatgactg aacgcatagt
     2161 ccgcgtcgca agcgggcagg gattctgggg cgactcgctc gacgctcccc ggcaacaggt
     2221 cgagaacgga ccgatcgatt atctgatgct cgattatctc gccgaggtca cgatgtcgat
     2281 tctgcagaag cagaaggagc gcgatccggc aatgggatac gcgcgcgact ttgtcggtgc
     2341 gatggattcg gtcctggatg cggtaaccga tcgcggtgtg cgcgtcatcg cgaacgcagg
     2401 tggcgtgaat ccgcccgcgt gcgcaaccgc gattcagggc gtggcgaaga aacgtggcaa
     2461 gtcgatcagg atcggtgtcg tgacaggcga tgacctgttg ccgcgcctga atgagttggt
     2521 ggagcaggga catgcgctcg cgcacatgga gaccggcgag ccgctcgaaa cggtgcgcga
     2581 tcgtgttctc tccgccaacg catacatcgg atcgaagccg atagtcgagg ctctgtcacg
     2641 caaggcgcag gtagtgatca ccggccgctc caccgatact gcgctcacga tggcgccgat
     2701 ccgtttcgag tatggctggg ccgacacgga ttacgatcgg ctcgctgctg gaatcgttgc
     2761 agggcacata ctcgaatgcg gtgcgcagag ctccggtggc aactgtcagt atgactggcg
     2821 taacattccg gatcttgcaa acgtcggcta cccgattgcc gacgcgtacg aggacgggag
     2881 cttcgtcgtc accaagcatc cgaacaccgg cggacgtgtg tcggtgcaga gtgtttcgga
     2941 gcagctcgtg tatgagatgg gcgacccgca cggctacatc acgccggatg tgatcgccga
     3001 cttctcgacg atccgcctcg aggatgcggg gccggatcgc gtgcgtgtat tcggaatcaa
     3061 gggatacgca ccgactgaca agctcaaggt ctcgattgca tacagatccg gatacaaggc
     3121 ggtcggcacg ctcgtgtact cctggccgga cgcgctcgaa aaggcacagc tcgccgaccg
     3181 tatcctgcgt gagcgactcg agcggctcgg tctccgcttc gacgagattc ttacggagtt
     3241 cgtcggtgcg tccgcaacgc acggcccgct cgccggtaaa acgggaagcg atgcgcccga
     3301 aatccagctt cgcgtcggcg tgcggtcgga tgaccgcgcg acggtcgagc gattcacgcg
     3361 cgagatcgcg ccgctcgtcc tgaacgggcc gcccggtgtc acaggcttcg cgggcggacg
     3421 tccgaaagtc gaagagatag ttgcgtactg gccggcactg atcgacaaga ctgtcgtgca
     3481 gactcacgtg gagatcgtct gatgaaagta cgcttgctcg acatcgcgca cgcgcgatcc
     3541 ggcgacaagg gcgacaccgc aaacgtcgga atcattgcca accggccgga gtggtatccg
     3601 ctcatgagtc gcgagctcac tcaggcgcgc gttgcacgac actttgcggg aatgatcaac
     3661 ggcgacgtcg atcgtttcga gctgccgaac ctgaacgctc tcaacttcct gctgcacggt
     3721 gcgctcggcg gcggcggaac gctgtcgctc aagacggatg cacagggaaa agtttattcc
     3781 accgcattgc tgcgcatggt gctcgacgta cccgacgccg aggcgcacgc gctcggtctg
     3841 ccgtccgcat gaaccgcatt cgcgtcgagt ccgatggcgc gctcgcgcac atcacgcttg
     3901 cgcggccgga aaagcgtaac gcgctggatc acgagacgac gcacgagctg cttcaggcat
     3961 tcacctcgtg cgcccagcac accggaacgc atgcggtcct cctcaccgct gacggcgccg
     4021 acttctgtgc tggcgccgat ctcacggagc ttgcaggcat gctcggcgca acagcggaag
     4081 agcactacgc cgacgccgag gcgctggggc gcgttttcat tgccatgcgc gagatgccca
     4141 agccggtgat cgcggccgtg cgtggccgtg cgctcgcggg cggcgcggga ctcgcgaccg
     4201 ctgcggatat cgtgatcgcg catgaagacg cgcagttcgg ctatcccgaa gtcctcgtcg
     4261 gtttcgtacc ggcgatggtg atgacgatgc tccgtcgctc ggtcggcgag aagcgcgctt
     4321 acgatctggt tgcgagcgga cgacgcgtca ccgcatcgga a
//
LOCUS       DATIMD010000489         2956 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3086862, whole genome shotgun sequence.
ACCESSION   DATIMD010000489 DATIMD010000000
VERSION     DATIMD010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2956
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3086862"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..390)
                     /locus_tag="VLI40_10865"
     CDS             complement(<1..390)
                     /locus_tag="VLI40_10865"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 family protein"
                     /protein_id="HSU97723.1"
                     /translation="MLHSRPAGCFALMLVCAAGACNNSGVRVDVRPLAGGPREMTQEQ
                     QVRQVVNRLTFGARPGDYTRVRKIGVDRWVGEQLAPDAISDERAEQFLSRYPSILEDE
                     ATLARIYGAPGDLRKAGGASPDTAAIRA"
     gene            complement(495..2213)
                     /locus_tag="VLI40_10870"
     CDS             complement(495..2213)
                     /locus_tag="VLI40_10870"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HSU97724.1"
                     /translation="MDPRRVAHVLSRISNLLELSGVDRFRARAYRGAAESIRDLSTDD
                     VTPLFRSGALATLPGVGPATLSVIAELVETGESSYLNRLLETIPEGLTDVASVPGLTA
                     AKAALLHRELGIGSLDDLEAAARDGRLLTVRGFGEKTVRRVLRGIDVVRGRSGRLRYQ
                     PALVEAMRSADQVAAHPDVIRVEPAGELRRVAAVVNDIVLVAECSAAAGNVLREVAND
                     AGVVESERRGSAMRIRFVDDTEIYLSCAHSGSFIFELWRRTGNAEHVAEVAAHAADAG
                     VTFEHDGIRGSDGREIVITAEHDIYEAAGLPFIVPELREGMGEVEAAARDALPALITR
                     DDIRGVLHGHSDYSDGSVPIAEMAAAARERGWSYIGISDHSQAAFYAGGLKPDDVRRQ
                     HDEIDRLNAGLRDFRILKGIECDILADGALDYDRKLREEFDYVIGSIHSQFSMDRDRM
                     TARILAALDDPTLTILAHPTGRLLLQREPYDVDLDAVIERAVATGVTLELNADPARLD
                     LDWHWCRVAHDRGARMEIGPDAHSPRGLDHTWFGVSLARKAWLSAADVLNTYSAAEIL
                     KLARRR"
     gene            complement(2217..2699)
                     /locus_tag="VLI40_10875"
     CDS             complement(2217..2699)
                     /locus_tag="VLI40_10875"
                     /inference="COORDINATES: protein motif:HMM:TIGR02246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HSU97725.1"
                     /translation="MMRITRAVLALLVAGSTGCVFVAGNTGSFSAHPTDAERTEARTE
                     IARMMDASARAWTRGDLDGFMDSYEPGSTITYVTPAGVVHGRDAIRARYAPRFARGAR
                     QDSLSFENLEVDLLAPDLANVIAYYRLSRGDSTTARGPTSLVMRRRDGQWRIIHDHSS
                     "
     gene            complement(2696..>2956)
                     /locus_tag="VLI40_10880"
     CDS             complement(2696..>2956)
                     /locus_tag="VLI40_10880"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005384 - manganese ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030026 - intracellular manganese ion
                     homeostasis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HSU97726.1"
                     /translation="LREAWLTGGATAIGALIPVLPFFFLTGRSAVLTSFVIAMASHFL
                     VGGLRSIFTGRGLFRSGFDMFVVGLGVAAVGYYAGEWVAHLL"
BASE COUNT          574 a         1001 c          859 g          522 t
ORIGIN      
        1 tgcgcgaatc gctgcggtat caggcgatgc cccacctgcc ttgcggaggt caccgggggc
       61 gccgtagatg cgtgccagcg tcgcctcatc ctcgaggatc gacggataac gtgagaggaa
      121 ctgctccgca cgttcgtcag agatcgcatc cggtgcaagc tgttcgccga cccaccggtc
      181 cacaccgatc ttgcgcacac gagtgtagtc acccggacgc gcgccaaatg tgagccggtt
      241 cacgacctgc cgaacctgct gctcctgagt catctcacgt gggccgccgg caagcggccg
      301 gacatcgaca cgcacgccgc tgttgttaca ggcgcctgcc gcgcacacca gcatgagtgc
      361 aaaacatcca gctggtcgac tgtgtagcac acgctgcatc agcttctccg catcaggttc
      421 tccggattgg atcagtgcgc atcctcgagt tcgacgcctc ggcttcacgc gttgttaatt
      481 gtcccgcctg catctcagcg tcgtcgcgcc agcttcagaa tctctgccgc ggagtaagtg
      541 ttcagaacat ccgccgcaga taaccacgcc ttccgcgcga gcgacacgcc gaaccaggtg
      601 tgatccaatc ctcgtggcga gtgtgcgtca ggacctatct ccatcctcgc gccgcgatcg
      661 tgcgcaacgc gacaccagtg ccagtccagg tccagtctcg ccggatcggc gttgagctcg
      721 agcgtcacac cggtcgcgac agccctctcg attaccgcgt cgagatcgac gtcgtaaggc
      781 tcgcgctgga gcagcagccg gccggtcgga tgggcgagaa tggtcagggt cggatcgtcc
      841 agggccgcca ggatgcgcgc ggtcatgcgg tcgcgatcca tggagaactg cgagtggatc
      901 gatccgatca cgtagtcgaa ctcttcacgc agcttgcggt catagtccag cgcgccgtct
      961 gcgaggatgt cgcactcgat ccctttcaga atcctgaaat cgcgcagccc ggcgttgagt
     1021 ctgtcgatct catcgtgctg gcgacgcacg tcatcgggct tgaggccgcc cgcgtagaac
     1081 gccgcctgcg agtggtcaga tatgccgatg taactccatc cacgctctcg cgccgccgct
     1141 gccatctcgg cgatcggcac cgagccgtcc gaatagtcgg agtgaccgtg cagcacgcca
     1201 cggatgtcgt cgcgcgtgat gagcgccggc agcgcgtcac gagccgctgc ctctacctcg
     1261 cccattcctt cgcgcagctc cggaacgatg aacggcagcc cggctgcctc gtatatatcg
     1321 tgctcggctg tgataacgat ttcgcgcccg tcacttccac gaataccatc atgctcgaac
     1381 gtgacgccgg catctgcagc atgggcagca acctcggcaa cgtgctctgc gttacctgtt
     1441 cgacgccaca gctcgaagat gaacgagcct gaatgtgcgc acgagagata gatctccgtg
     1501 tcatccacga agcgaatgcg cattgccgat ccacgtcgct ccgactcgac cactcccgcg
     1561 tcgttggcaa cttcgcgcag aacgttgccc gccgcggcgc tgcactcggc cacgagcacg
     1621 atgtcgttca cgacagcggc aacgcggcgc agctcgcccg ctggctcaac gcgaatgacg
     1681 tccggatgcg cagctacctg gtctgcagat ctcatcgctt ccacgagcgc cggctggtag
     1741 cgcagtctgc cggatcgccc acgcacgacg tcgatgcctc ggagaactcg cctgaccgtc
     1801 ttctctccaa aaccgcgcac cgtgaggagc ctgccgtcgc gagctgccgc ttccagatcg
     1861 tccagcgatc caatgcccag ctcgcggtgg agcagggcag ccttggcagc agtcagcccg
     1921 ggcacgctcg ccacatccgt caacccttcc ggtatcgtct ccagtaaccg gttcagatac
     1981 gacgactcgc ccgtctcgac cagctcggcg atcaccgaca gcgtggccgg tccgacgccg
     2041 ggcaatgtcg ccagcgcgcc ggaacgaaac agcggagtta cgtcgtcggt cgagagatca
     2101 cgaatcgatt cagcggcacc acgatatgcc cgcgccctga agcgatcgac tccactcagc
     2161 tccagcagat tgctgattcg cgagaggacg tgcgcaacgc gacgcgggtc catgcatcac
     2221 gatgaatgat cgtggattat gcgccactga ccgtcgcgcc tgcgcatcac gagactggtc
     2281 ggaccacgag cggtagtcga gtcgccgcgg ctcaatctgt agtacgcgat cacattcgcg
     2341 agatcaggcg cgagcagatc gacttccaga ttctcgaatg agagcgaatc ctgccgcgct
     2401 ccacgagcga aacgtggtgc gtagcgcgct cgaattgcgt cgcgtccatg taccacgccc
     2461 gccggagtta cgtacgtgat ggtacttccc ggttcgtacg aatccatgaa gccatcgagg
     2521 tcaccccgcg tccaggcacg cgcagatgca tccatcatcc tggcgatctc ggtccgtgcc
     2581 tccgtgcgct ccgcgtcggt gggatgcgcg gagaagctcc ccgtattacc ggcgacgaag
     2641 acgcatcctg tcgatcctgc aaccagtagc gcgagcactg ctcgtgtgat tcgcatcata
     2701 gcagatgtgc cacccattct cccgcgtagt agccgacggc agcgacgcca agtccgacga
     2761 cgaacatgtc gaacccggag cgaaacaacc cgcgaccagt gaagatcgac ctcaatccgc
     2821 caacaagaaa gtgactcgcc attgcgatca cgaacgacgt caacaccgcc gagcgtccgg
     2881 tcaggaagaa gaacggcagc accggtatca acgctccaat agcggtggca ccacctgtga
     2941 gccatgcctc gcgcag
//
LOCUS       DATIMD010000490         1642 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1357304, whole genome shotgun sequence.
ACCESSION   DATIMD010000490 DATIMD010000000
VERSION     DATIMD010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1357304"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..371
                     /locus_tag="VLI40_10885"
     CDS             <1..371
                     /locus_tag="VLI40_10885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97727.1"
                     /translation="KSDGDVISHCSWVWVLPNAQVELRASQINAFALANAINSFACPL
                     QRTSESQWQYGAAKLDGCSHSHKSSSVNNPAPQTGSSFSTFIIESDTKSSSSASSSGE
                     DTSLYSKEVAHSRYRGNDVV"
     gene            complement(372..1439)
                     /locus_tag="VLI40_10890"
     CDS             complement(372..1439)
                     /locus_tag="VLI40_10890"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HSU97728.1"
                     /translation="MTSVGFDLHKRYITACALNAAGEIIAEVRQLSTALEAVLTWLGA
                     LPGPVTIGCEATLYWEWLATRLAEHSYTVRVAHAFHVKLIWQARAKTDPIDARKLAEL
                     LRVDLFPAIWIPDLETRRRRQLLRGRAFLVRERTRLKNRIHGHLMSENLVPPGADLYG
                     KGGRAWLAAAPLSPVLRAQTERLLTLHDAITVEIQGLDGDVRRAARGNPTVKQLTTMP
                     GVGVFSALFVQAEIGSIDRFRSSHELAAYAGLVPTTRSSGGKTAHGGLGKASNRWLKW
                     IMVEIVVTLKLAPGPVGTYYRHLLRAKGKPKAQAAAARKLCCYLYWMLKQGWTYDEWL
                     QQHVNSQRSEVRPVQRMGAMA"
BASE COUNT          320 a          507 c          506 g          309 t
ORIGIN      
        1 caaagtccga tggtgacgtc atctctcact gcagttgggt gtgggtgctc cctaacgccc
       61 aagttgagct gcgggcgagt caaataaatg cgttcgcgtt agcgaacgcc atcaatagtt
      121 tcgcttgtcc gctgcaacgc acctctgaaa gtcaatggca gtacggtgca gcaaaactag
      181 atggctgttc acacagccac aaatcatcca gcgtaaacaa cccagcacca caaaccggca
      241 gctccttctc cactttcatc atcgagagcg acacgaagtc gtcttcaagc gcctcttcgt
      301 ccggagaaga cacgagcctg tattcgaagg aggtggccca ttcgcgttac cgggggaatg
      361 acgtggtgtg actacgccat cgcacccatg cgttgcaccg ggcgcacctc cgaccgttgg
      421 gagttcacat gctgctggag ccactcgtcg taggtccagc cctgtttcaa catccagtac
      481 aggtagcaac acagcttgcg cgccgcggcg gcctgcgctt tcggcttgcc tttcgcgcgc
      541 agcaggtggc gatagtaggt gcccaccggg ccgggcgcca gcttgagcgt gacgacgatc
      601 tcgaccataa tccacttgag ccaccggttg ctcgccttgc ctaacccacc gtgtgcggtc
      661 ttcccgccgg agctgcgcgt cgtcggcacg aggcccgcgt acgccgcgag ttcgtgactc
      721 gagcgaaagc gatcaatgct gccgatctcc gcctgcacga agagcgcgct gaagacgccg
      781 acgcctggca tcgtcgtgag ctgtttcacc gtggggttcc cgcgcgcggc gcgacggaca
      841 tcgccatcga gtccctggat ttcgaccgtg atggcgtcgt gcagcgtgag caagcgctcg
      901 gtttgcgcgc ggagcaccgg agagagcggc gcagcggcga gccaggcgcg tccgcctttc
      961 ccatagagat cggcaccagg cggtacgagg ttttctgaca tcaggtgtcc atggatgcga
     1021 ttcttcaggc gcgtgcgctc gcgcacgagg aatgcgcgtc cgcgaaggag ttgtcgccgg
     1081 cggcgcgtct caagatcggg aatccagatc gctgggaaga gatcgacgcg gagcagttcc
     1141 gccaacttgc gcgcatcaat cggatcggtc ttcgcgcgcg cctgccaaat gagcttgacg
     1201 tggaaggcat gcgcgacgcg caccgtatag ctgtgttccg cgagccgcgt cgcgagccat
     1261 tcccagtaga gcgtggcttc acagccgatc gtcacgggtc cgggcaacgc cccaagccat
     1321 gtgaggaccg cttcgagcgc ggtggagagt tgccgaacct cggcgatgat ctcgcccgca
     1381 gcattgagtg cgcacgcggt gatgtagcgc ttatggagat cgaatccaac ggacgtcatg
     1441 catgcctccc gcacaggttg cggtgaagct gcgaccgcga ggataactca gcgagatgct
     1501 aggacctcgc gctgcgcatg actttcaatc tcatagagtc gcgttagatc gccggcgcga
     1561 cggtgttgta ggagcacatc gaaccgcgtt cctccgggca ggcgacgaca ttcacttgaa
     1621 aacgccgagt ggctatatcc ca
//
LOCUS       DATIMD010000491         3503 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2507106, whole genome shotgun sequence.
ACCESSION   DATIMD010000491 DATIMD010000000
VERSION     DATIMD010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3503
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2507106"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(206..538)
                     /locus_tag="VLI40_10895"
     CDS             complement(206..538)
                     /locus_tag="VLI40_10895"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSU97729.1"
                     /translation="MTTTATKIESANAPTGPEGQRYLGSTDRIGMRLWKDEPAGERKP
                     TATRAYDTVGYVIRGVAELSMGDETVTLRAGDSWVVPADTEHTYRIVDTFSAIEATSP
                     PAHGLDAP"
     gene            complement(664..951)
                     /locus_tag="VLI40_10900"
     CDS             complement(664..951)
                     /locus_tag="VLI40_10900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97730.1"
                     /translation="MSRPAEPHEITISAGTTMRHVIQLTGPVNNLVALCDDGTMWTYR
                     PDTSAWTQLPSVPGQPAITEASDAMPPHDRAAIERQERAEQARRDRFEGKP"
     gene            complement(1029..1102)
                     /locus_tag="VLI40_10905"
     tRNA            complement(1029..1102)
                     /locus_tag="VLI40_10905"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1066..1068),aa:Pro,seq:tgg)
     gene            complement(1144..1767)
                     /locus_tag="VLI40_10910"
     CDS             complement(1144..1767)
                     /locus_tag="VLI40_10910"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009146 - purine nucleoside triphosphate
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP pyrophosphatase"
                     /protein_id="HSU97731.1"
                     /translation="MTQRCLIATRNPGKLRELRGIFANTPFRLTDLTEVGVAEADDED
                     SIESWETFEENALAKAQYFYRRTGIPTFADDSGLAVDALGGRPGVRSKRFSGRTDLTG
                     RSLDAANNAALLAQLRRMNALPANASFICAAAFVDSDRAVVRTGTTAGVIVPQPRGFS
                     GFGYDPHFVSQELQQTFGEASDADKERVGHRGRAFRSLLGALSGENA"
     gene            complement(1764..2483)
                     /gene="rph"
                     /locus_tag="VLI40_10915"
     CDS             complement(1764..2483)
                     /gene="rph"
                     /locus_tag="VLI40_10915"
                     /inference="COORDINATES: protein motif:HMM:TIGR01966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HSU97732.1"
                     /translation="MGSSDTAVRGEGQMRPISIERGVSPYAEGSCLISFGMTKVLCAA
                     SIEDSVPSWRRGRGEGWLTAEYAMLPRATRTRTSRERDKVGGRTQEIQRLIGRSIRAM
                     LDDFKFGEFTLKLDCDVIQADGGTRTAAITGAAVAAVDAFDWMVAQGKIPVSPVRRRV
                     AAVSVGVIDGTARLDLDYEQDVRAEVDMNVVMSSEGKYVEVQGTGEHGTFDRAQLDRL
                     LELATLGITVLSERQAMALGR"
     gene            complement(2476..2922)
                     /gene="rfaE2"
                     /locus_tag="VLI40_10920"
     CDS             complement(2476..2922)
                     /gene="rfaE2"
                     /locus_tag="VLI40_10920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase"
                     /protein_id="HSU97733.1"
                     /translation="MSWNAMRDWRAEFWGRVVFTNGVFDLLHPGHVDVIQAARAAGDA
                     LVVGINSDESVRRLKGESRPIRSQVERAYVIAALESVDVVTVFDEDTPLELIRCLLPD
                     VIAKGGDYTEATIVGADEIRERGGDVLVVPLTPGQSTTSIIERMRG"
     gene            complement(2949..3254)
                     /locus_tag="VLI40_10925"
     CDS             complement(2949..3254)
                     /locus_tag="VLI40_10925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97734.1"
                     /translation="MLTLAIATYVTVNVGAPYMRFYRFRDAVDQQVRYATFRNDEGIR
                     KEIWAAADSLDLPEDAYHVTVERAPSSIRVFGSYDDSWQLLRYTRPVHFLLNEKGSL"
     gene            complement(3293..>3503)
                     /locus_tag="VLI40_10930"
     CDS             complement(3293..>3503)
                     /locus_tag="VLI40_10930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97735.1"
                     /translation="SRGAPTAVQRSLQMVLDIDVVDQVTGKSLWTRKGYAVDGQYNEG
                     EESVGRSRAVDKLVTAIVDGVQSQW"
BASE COUNT          645 a         1124 c         1059 g          675 t
ORIGIN      
        1 ccgggcgaat atctgtcgct gttcgagccg acccggaact ccggccgcgc cggcgtaatc
       61 agggccgagg gaaccgtgta acaaacagag cgttgcctat cgcgcaccga catgacgttg
      121 catgaccttg catgagattg catgcgcgac gcgtgcaatc tcgcctgtcg catcgcgtgt
      181 acaaaaaatg cggagcgcgc gtgaatcagg gcgcgtcgag cccgtgcgct ggaggcgacg
      241 ttgcttcgat cgcgctgaac gtgtcgacga ttcggtacgt gtgctcggtg tcggcgggaa
      301 cgacccacga atcgccggcc ctgagcgtca cggtttcatc gcccatactc agctcggcga
      361 cgccgcgaat tacgtagccg acggtatcgt atgcacgcgt cgcagtgggc ttgcgctcgc
      421 ccgcgggctc atccttccac agtcgcatgc cgatgcggtc cgtgctgccg aggtagcgct
      481 gcccctcggg accggtgggt gcatttgcgg actcgatttt tgttgcagtg gtggtcattg
      541 ctcgcgtctc cgattgctgc gtgattcatg tggtgaatga tcgcagacgc tgtgccgggt
      601 gatgacgaat cttccgagcg acgtgctcgt gcggagcgca aatgatgctc tgctgattgc
      661 gctctatggc ttgccctcga atcggtctcg gcgcgcctgc tcggcccgct cctgtcgctc
      721 gatcgccgcg cgatcgtgcg gtggcatcgc gtcacttgct tcggtaattg ccggctggcc
      781 cggcaccgat ggcagttgag tccatgccga cgtatccgga cgatacgtcc acatcgttcc
      841 gtcgtcgcac agtgcgacaa gattattgac gggtccggta agctgaatga cgtgccgcat
      901 cgtggttccg gcgctgatgg tgatttcgtg aggctcggcg ggtcgcgaca ccgaccgatg
      961 aacatagccc tcctggacaa gataaagccc cgcatcagtc agagatgcgg ggctttatgt
     1021 cggaaaggtc ggggcggcca gattcgaact ggcgacctcc tgctcccaaa gcaggcgcga
     1081 taccgggcta cgctacgccc cgagccaatg aacttagtcg ggggccaatg gttactgcaa
     1141 cgctcaggcg ttttctccgg aaagcgcgcc gagcagtgat cgaaaggcgc ggccccggtg
     1201 ccctacccgc tccttgtccg cgtccgacgc ctcgccgaag gtctgctgca gctcctgcga
     1261 gacgaaatgg gggtcgtagc cgaagccgct gaagccgcgc ggctgtggaa ctatcacgcc
     1321 ggcggtcgtt ccggttcgga cgacggcgcg atcgctgtcc acaaaggcgg ctgcacagat
     1381 gaacgacgcg ttcgcgggga gcgcgttcat gcgacggagc tgcgcgagca gcgccgcgtt
     1441 gttggcggcg tccagggacc tgccggtgag atccgtgcga cccgaaaaac gcttgctgcg
     1501 cacgccggga cgtcctccaa gtgcgtcgac cgcaagccct gagtcgtcgg caaatgtggg
     1561 aatgccggtg cgacggtaga aatactgcgc ttttgcgagc gcattctctt cgaaggtctc
     1621 ccacgattcg atggaatctt cgtcgtcagc ttcggccacg ccgacctcgg taagatcggt
     1681 gagccgaaac ggcgtgttcg caaaaatgcc gcgaagctcc cgcaattttc cgggattgcg
     1741 cgtcgcgatg agacagcgct gcgtcaccga ccgagtgcca ttgcctgtcg ctccgacagt
     1801 acggtgattc cgagcgtggc gagctccagc agtcgatcca gctgggcgcg atcgaaggtg
     1861 ccgtgttcac cggtcccctg cacttccacg tacttgcctt ccgagctcat cacgacattc
     1921 atgtccacct ccgcacgcac atcctgctcg taatccaggt ccagtcgtgc agttccatcg
     1981 atcacaccga cgctcactgc tgcgacgcgc cggcgcacgg gcgagaccgg tatcttgccc
     2041 tgcgcgacca tccagtcgaa cgcatcaacc gctgcaacgg ctgcgccagt tatcgccgcg
     2101 gttcgcgttc cgccgtccgc ctgaatgacg tcgcagtcga gcttgagcgt gaattcaccg
     2161 aacttgaagt catccagcat ggcgcgaatc gaccggccga tcagcctctg aatctcctgg
     2221 gtgcgcccgc caaccttgtc gcgctcgcgc gaagtgcgcg tacgcgtcgc acgcgggagc
     2281 atggcgtact cggccgtgag ccatccctcg ccgcgaccgc gacgccacga cggcacgcta
     2341 tcctcgatcg atgcggcgca gagcaccttt gtcataccaa acgagatgag acaggatccc
     2401 tcggcgtacg gcgaaacgcc gcgctcgatg gagattggac gcatctggcc ttcaccacgc
     2461 actgctgtat cggaactacc cacgcatccg ctctatgatt gaagttgtag actggccggg
     2521 cgtcagtggg acaacgagca catctccgcc acgctcgcgg atctcgtccg cgccgacgat
     2581 cgtcgcctcg gtgtaatcgc cgcccttcgc tatcacgtcc ggcaggagac accgaatgag
     2641 ttcaagcggc gtgtcttcat cgaacacagt gacgacgtcg actgattcaa gcgcggcgat
     2701 gacgtacgcg cgctccacct gcgacctgat cggacgcgat tcacccttga ggcgccgcac
     2761 ggactcgtcg ctgttgattc caacgacaag cgcatcgccc gctgcacgtg cggcctgtat
     2821 cacgtcgacg tgtccgggat gcaacagatc gaaaactccg ttggtgaaca ccacacgtcc
     2881 ccagaactcg gcgcgccagt cgcgcattgc gttccaggac atgactttcg acgcagggtc
     2941 acgtggtttc acagcgagcc cttctcgttc agtagaaagt gcacgggacg agtgtaacgc
     3001 agcagctgcc acgaatcatc gtacgagccg aatacacgaa tggagctcgg cgcacgctcg
     3061 accgttacgt gatacgcatc ttcaggcaga tcgagagagt cggcggcggc ccagatttcc
     3121 ttgcgaattc cctcgtcatt gcggaatgtg gcataacgca cctgctgatc gactgcatca
     3181 cggaaccggt agaatcgcat ataaggcgcg ccgacgttca cggtcacata tgtcgcgatc
     3241 gcgagcgtca gcaaccaccc aagacaaccg agatcagagg tgccgcggcg gctcaccact
     3301 gcgactgtac tccgtcgacg atcgccgtca cgagcttgtc caccgctctc gagcggccga
     3361 cgctctcctc gccttcgtta tactgtccgt cgacggcgta tcccttgcgc gtccagagac
     3421 tcttgccagt cacctgatcg acgacgtcga tgtcgagtac catctgcagc gatctctgta
     3481 cggcggtcgg tgcgccacgc gac
//
LOCUS       DATIMD010000492         5363 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_778312, whole genome shotgun sequence.
ACCESSION   DATIMD010000492 DATIMD010000000
VERSION     DATIMD010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5363
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_778312"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..400
                     /locus_tag="VLI40_10935"
     CDS             <1..400
                     /locus_tag="VLI40_10935"
                     /inference="COORDINATES: protein motif:HMM:NF037152.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97736.1"
                     /translation="LRAIAEEPGPAPQRLRRLLDALIAVKRRKAAGDPELFSAYRMLA
                     AGAQSVVAAHIEELVGLVATVIRAGVDEGTFRKVDPVAMGRTVLIATSRFHHPAHAAE
                     WADPGIDAAFDDVWRLLMAGLCVGKKKQER"
     gene            481..855
                     /gene="rplS"
                     /locus_tag="VLI40_10940"
     CDS             481..855
                     /gene="rplS"
                     /locus_tag="VLI40_10940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HSU97737.1"
                     /translation="MHAFSETQKEWLRTDVPPFRAGDTVRVNVRVKEGDKERVQAFEG
                     VCIARRGAGVSASFTVRKISNGVGVERIFPLHSPMLADVAVVRRGRVRRAKLFYLRAL
                     TGKATRIKERKAKPAGAQAGNA"
     gene            855..1472
                     /locus_tag="VLI40_10945"
     CDS             855..1472
                     /locus_tag="VLI40_10945"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: protein motif:HMM:NF013514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HSU97738.1"
                     /translation="MRWGPVERELRSAGGLLLAGVDEVGRGPLAGPVVACAVVMDPNA
                     PTINGVADSKTIGAPERRELAVKILARALCVGLGAASVHEIDRLNIYHASTLAIRRAI
                     GKLRVVPDHVLIDGNPIRALEVEHRAIVGGDATCYSIACASIIAKVTRDRLMVSLARR
                     YPAYLWERNVGYSTSAHLSALNSAGPTVHHRKSFGPVAQCQFQLR"
     gene            1451..1954
                     /gene="purE"
                     /locus_tag="VLI40_10950"
     CDS             1451..1954
                     /gene="purE"
                     /locus_tag="VLI40_10950"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: protein motif:HMM:NF012934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HSU97739.1"
                     /translation="MPVSTPLIGVIMGSQSDWDTMSHAATTLEQLGVPFETRVVSAHR
                     TPDLLFEYASTAAGRGLEVIIAGAGGAAHLPGMCASKTLLPVLGVPVESKALHGMDSL
                     LSIVQMPAGVPVGALAIGRAGAINAALLASAIVANGHPEFRDALTRFRADQTQKVLDA
                     PEPRGAA"
     gene            1926..3134
                     /locus_tag="VLI40_10955"
     CDS             1926..3134
                     /locus_tag="VLI40_10955"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: protein motif:HMM:NF004679.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HSU97740.1"
                     /translation="MLPNRGAPRDVLDDAAIPALAGRLAHPVSGPSQRDGVTARVGIL
                     GAGQLGQMLALAGIPLGMRFNFFSPTPSASAESVGNVTIGEYDDVAALREFARSVDVV
                     TYEFENVSSDAVAEIEQICPVWPPRAALVTSQDRGLEKQEFTRLGIPVAPYRLIDSLE
                     DLENAVREVGMPGILKTRRFGYDGKGQVRISARSEAESAWNALGPVPSIYEGFVQFER
                     ELSVIAARSADGTTLCYPVAENHHRDGILRTSFAPADRLSDAKRHQAESYARTLLTAL
                     EYVGVFALEMFDTASGLVANEMAPRVHNSGHWTIEGAETSQFENHMRAVCNLPLGDCA
                     PVGHSAMFNLIGEHPDTACVLAVPDAHLHLYGKTERSGRKLGHVTIRSRNREDLQRHV
                     ASLRAIPRII"
     gene            3147..3797
                     /locus_tag="VLI40_10960"
     CDS             3147..3797
                     /locus_tag="VLI40_10960"
                     /inference="COORDINATES: protein motif:HMM:TIGR00427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HSU97741.1"
                     /translation="MINQSTVAFTTLAFTSLLAIVNPLSAVPLYVTATSDLDDRQRAS
                     TLRIAVATGIIALVAFGLAGTYILRFFGITTYAFRIAGGIIFLGIGSDMLKARRSRDR
                     TSRSEQEAAEQKAEVGIIPLGIPTLAGPGSITTVITLTAQADTRMELVGLYGAIVAVM
                     VLSWMVLAVAPFIVQRVGRTGMNVMTRLMGLLIMVIGVQFIIEGVRTVALDILRHA"
     gene            3794..>5363
                     /locus_tag="VLI40_10965"
     CDS             3794..>5363
                     /locus_tag="VLI40_10965"
                     /inference="COORDINATES: protein motif:HMM:NF012907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 18 protein"
                     /protein_id="HSU97742.1"
                     /translation="MTDDYPDEEAPSGPVFLDRTGRRWPRVRRFATAIGAITTLLLLS
                     LAGIMVLAPPALPAFRPATTTVAPRFVGARENRRRRTKRSELYAALQVQKTARSIRKA
                     AAAIERELAGVPSARQIRAGFYVWWADNSLASFQRNYDDLDWIIAEWGYLSPAGDSVD
                     VSMIQKDTSFFGVYDSIPSHPKVLLLVNNIDRRTQLFQAAGVTAMLATRASRLKVENQ
                     IVDAVLHYRFGGVTIDFENVPPGAITNLVLFQSELGAMLHAHKLLLTQTVGVNAAPRD
                     LKAFSAVNDYLFLMLYDEHYGKGDPGPVASQKWYVDRAREMLRSVPASKAIFALGAYG
                     YDWNDAGPANSGDSYTFQEVLAKGRDNPGSSHMGFDREALNPYMTWTDPDSTDHLVWY
                     LDGASAYNQVRAERALGGAGYAVWRLGAEDPALWRAVGEDRVTDAAGMLSEIPAGYET
                     EFIGDGEILQIVASPRSGRRILTPDTARGVITGERIVAYPSPYIVRKYGKSEHEVALT
                     FDDGPDGTWTPQILD"
BASE COUNT          938 a         1608 c         1783 g         1034 t
ORIGIN      
        1 gctgcgcgcg atcgccgagg agccggggcc ggcaccacaa cggttgcggc ggctgctcga
       61 tgcgctgatt gcggtcaagc gacgcaaagc cgccggcgat ccggagctgt tttctgctta
      121 ccggatgctg gcggccggcg cgcagtccgt cgtcgccgcg cacatcgagg agttggtcgg
      181 actcgtcgcg acggtcattc gtgctggcgt cgacgagggc acgttccgca aggtcgaccc
      241 cgtggcgatg gggcgaacgg tgctgatcgc aacgtcccga ttccatcacc cggcacacgc
      301 ggcggaatgg gcggatccgg gcatcgacgc cgcgttcgac gatgtgtggc ggctgctgat
      361 ggctgggttg tgcgtgggga agaagaagca ggagcgatag cagtaggggt gtcccccttc
      421 caccagcccc ctcctccggc tatgttttga gactgtcccc gaaaacgccg agaatatccc
      481 atgcacgcct ttagcgaaac ccagaaagag tggctccgta ccgatgttcc ccccttccgg
      541 gccggcgaca cggtgcgcgt gaatgtccgg gtcaaggaag gtgacaagga gcgcgttcag
      601 gctttcgagg gcgtctgcat cgcccgccgc ggcgctggcg tctcggccag cttcacggtt
      661 cggaagatct cgaacggcgt tggcgtcgag cgcattttcc cgctccattc gccgatgctc
      721 gccgatgtcg cagtcgtccg tcgcggccgc gttcgccgcg ccaagctgtt ctacctccgg
      781 gcactgaccg gcaaggctac gcgcatcaag gagcgcaagg ccaagccagc gggcgcacag
      841 gccggcaacg cctgatgcgc tggggccctg tggagcgtga actgcgctcc gctggtgggc
      901 tccttctggc tggagttgat gaagtcggac ggggccctct tgcgggcccc gttgtcgcat
      961 gtgcggtcgt catggacccg aacgcgccga ctataaatgg cgtcgcggac tcgaaaacga
     1021 tcggggcgcc cgagcgccgc gagctggcgg tgaagatact cgcccgcgcg ctctgtgtgg
     1081 ggttgggcgc agcctccgtt cacgagatcg accggctcaa catctaccac gcgagcacgc
     1141 tcgccatccg gcgtgcgatc ggcaagctgc gcgttgtccc cgatcatgtg ctgatcgacg
     1201 gcaatcccat tcgcgcactg gaagtcgagc accgcgcgat cgtgggcggc gacgcgacct
     1261 gctacagcat tgcctgtgcg tcgatcatcg ccaaggtcac ccgtgacaga ctgatggtct
     1321 cgctagcgcg gcgctatcca gcgtatcttt gggagcgtaa cgttgggtac agcacgtccg
     1381 cgcatctgtc ggctctcaat tccgcgggac cgaccgtcca tcatcgcaag agcttcggtc
     1441 cagtcgcaca gtgccagttt caactccgct aatcggcgtc atcatggggt cgcagtcgga
     1501 ctgggacacg atgtcccacg ccgctacgac cctggagcag ctcggcgttc cattcgagac
     1561 gcgcgtcgtg agcgcccatc ggacgccgga tctgctgttc gagtacgcgt cgactgccgc
     1621 cggacgagga ctcgaggtta tcattgcagg cgcgggcggc gcggcgcatc tgcctggaat
     1681 gtgcgcgtca aagacgctgc tgccagtgct cggcgttccg gtcgagtcga aagcgttgca
     1741 cgggatggat tctctcctgt ccattgtgca gatgccagcc ggcgttccgg ttggcgcgct
     1801 tgcgatcgga cgcgcaggtg cgatcaatgc ggcgctgctc gcctccgcga tcgtagccaa
     1861 cggccatcct gagtttcgcg acgcactgac acgcttccgc gcggaccaga cgcagaaagt
     1921 gctggatgct cccgaaccgc ggggcgccgc gtgatgtact ggatgatgcg gcgattcctg
     1981 cgctggctgg taggctggct catcccgtga gcggaccatc gcaacgcgat ggcgtcaccg
     2041 ctcgggtcgg aattctcggt gctggccagc tgggacagat gctggcgctg gctggaatcc
     2101 cgctggggat gcgtttcaac ttcttctctc caacaccgag cgcgtccgcc gagtcggtcg
     2161 gcaacgtaac catcggcgag tacgacgatg tcgcggcgct acgcgagttt gcgcggagcg
     2221 tcgatgtggt tacgtacgag ttcgagaatg tctcgtcgga cgccgttgcc gagatcgaac
     2281 agatatgtcc cgtgtggccg ccgcgtgctg cactggtcac gtcgcaggat cgaggactcg
     2341 agaagcagga attcacgcgg ctcgggattc cggtcgcacc gtatcggctg atcgactcgc
     2401 tcgaggatct ggaaaatgcg gtccgcgaag ttggcatgcc ggggatcctc aagacgcgcc
     2461 gctttggtta cgatggcaag ggacaggtgc ggatatcagc gcggagcgag gccgaatctg
     2521 cgtggaacgc gctcggcccc gttccatcga tttacgaagg gttcgtgcaa ttcgagcgcg
     2581 agttgtcggt gatcgcggcg cgttccgccg acgggacgac gctgtgttat cctgtcgccg
     2641 agaaccatca ccgcgatggg atcctgcgga catcgttcgc gccggcggac aggctgagcg
     2701 acgccaagcg tcatcaggcg gagagttatg cgcgcacgct gttgactgcg ctcgaatacg
     2761 ttggtgtatt tgcgctcgag atgtttgaca cggcatcggg tctcgtcgcg aacgagatgg
     2821 cgccgcgcgt gcacaattcc ggccactgga cgatcgaggg tgcggagacg agtcagttcg
     2881 agaatcacat gcgtgcggtg tgcaatcttc cactgggtga ctgcgcaccc gtcgggcatt
     2941 cggcgatgtt caacctgatc ggcgagcatc cggatacggc ttgcgtgctg gcggttccgg
     3001 atgcacatct tcatctgtac ggaaagacag agcggagcgg gcgcaagctg ggacacgtta
     3061 ccatccggtc gcggaaccgc gaggatctgc agcggcacgt tgcgtctctg cgtgcgattc
     3121 cgcgcatcat ctagcggagt gcgcggttga tcaaccaatc gactgtcgcg ttcacgacgc
     3181 ttgcgttcac gtcgctgctc gcgatcgtga atccgttgag cgccgttccg ctttacgtca
     3241 ccgccacttc cgatctggat gacaggcagc gtgcgtccac gctgcgaatc gccgttgcaa
     3301 ccggaataat cgcgctggtc gcgttcgggc ttgcgggcac gtacatcctg cgattcttcg
     3361 gaataactac ttacgcattc cgcatcgccg gaggaatcat cttcctcggc atcgggagcg
     3421 acatgctcaa ggcgcgccga tcgcgcgatc gaaccagccg tagtgagcag gaagccgccg
     3481 agcagaaggc ggaggtcggt attattccgc tggggatacc aacgctcgcg ggtccgggct
     3541 cgatcacgac agtgattacg ctcaccgcac aggccgatac gcgcatggaa ctggtgggtc
     3601 tgtacggcgc gatcgttgcg gtgatggtgc tatcatggat ggtgctggcc gtcgcaccat
     3661 tcatcgtaca acgcgtcggt cggactggca tgaacgtcat gacgcgattg atgggccttc
     3721 tgatcatggt aattggcgtg cagttcatca ttgagggtgt ccgcaccgtt gcgctcgaca
     3781 tcctgcgtca cgcgtgaccg acgactatcc ggatgaggaa gcgccatccg gtcccgtatt
     3841 tctggaccgg acggggcgcc gctggccgcg cgtccggcgc ttcgcgacgg caattggcgc
     3901 gataaccacg ctgctgttgt tgtcgctggc cggaataatg gtgctggcgc cacccgcgct
     3961 accggcattc aggcccgcca cgacgactgt tgcaccacgc ttcgtgggcg cgcgcgaaaa
     4021 cagacgtcga cgtaccaaac gcagcgagct gtacgccgcg ttgcaggtcc agaagaccgc
     4081 gcggtcgatt cggaaggcgg ccgctgcgat cgagcgtgag ctcgcgggag tgccgagcgc
     4141 acgtcagata cgcgctggct tctatgtctg gtgggccgac aattcgctgg cttcgttcca
     4201 gcgcaactat gacgatctcg attggataat agcggagtgg ggctacctgt cgccggccgg
     4261 agacagcgtc gacgtcagca tgattcagaa ggacaccagt tttttcggtg tgtacgactc
     4321 gattccgtcg caccccaagg tgctgctgct ggtcaacaat atcgatcgca ggactcagct
     4381 gttccaggca gctggagtta ccgccatgct cgcgacgcgt gcttcgcggc tgaaggtgga
     4441 gaaccagatt gtcgatgcgg tgctgcacta caggttcggt ggcgtaacga tcgatttcga
     4501 gaacgtgcca cccggcgcga tcaccaacct ggtgctgttt cagagcgagc tcggcgcgat
     4561 gttgcatgcg cacaagctgt tgctgaccca gacggtaggt gtcaatgcgg cgccgcgcga
     4621 tctcaaggcg ttctcggcgg tcaacgacta cctgtttctc atgctctacg acgagcatta
     4681 tggaaagggt gatcccgggc cggtagcaag ccagaagtgg tacgtcgatc gcgcccgcga
     4741 gatgttgcgc agcgtgccag cgtcgaaagc gatctttgcg ctcggcgctt atggctacga
     4801 ctggaacgac gccgggccgg cgaattctgg cgactcatac acttttcagg aagtgcttgc
     4861 gaaggggcgt gacaatcccg gaagctcgca catggggttt gatcgggagg cgctcaatcc
     4921 gtacatgaca tggactgatc cggattcgac cgatcacctc gtctggtatc tcgatggagc
     4981 gagcgcgtac aatcaggtgc gtgccgagcg tgcgctgggc ggcgcgggct acgctgtgtg
     5041 gcgactcggt gccgaagatc cggccctgtg gcgggcggtt ggcgaggatc gcgttaccga
     5101 cgctgcgggc atgctgtcgg agattcccgc agggtacgag acggaattca taggcgacgg
     5161 agagatactt cagatcgtcg cctcgccgcg cagcgggcgg cgcatactga cgcccgatac
     5221 tgcgcgcggc gtgatcaccg gcgagcggat cgtcgcctat ccatcgccct atatcgtcag
     5281 aaagtacggg aagtcggagc acgaggttgc actgaccttc gacgacggcc ccgatgggac
     5341 gtggacgccg cagattctcg ata
//
LOCUS       DATIMD010000493         4213 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3947881, whole genome shotgun sequence.
ACCESSION   DATIMD010000493 DATIMD010000000
VERSION     DATIMD010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4213
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3947881"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(338..997)
                     /locus_tag="VLI40_10970"
     CDS             complement(338..997)
                     /locus_tag="VLI40_10970"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSU97743.1"
                     /translation="MADDLAIINTPSRSELYGPGDMVNRIYFPLDSVISMTAPVGSAQ
                     GEVATVGQEGMIGLPTLFGTDMANMRFFVQIGGRSAVMPADRFTELLRSDDALRTVML
                     RYAHAMFMQIGQSVVCNQRHSLRQRCARWLLMTHDRVPGDHFHLTHEALAVMLGVRRA
                     GVTVAAGNLQKAGLIRYRRGEITIVDRPGLEQVSCECYRLVADVYDRLVGQVIEKDSA
                     A"
     gene            complement(1135..1500)
                     /locus_tag="VLI40_10975"
     CDS             complement(1135..1500)
                     /locus_tag="VLI40_10975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97744.1"
                     /translation="MSVYEMPVVLGVVVILMGLGIIWDSWGPQAIGPMRDRRRRARAA
                     IDLKGELVAGVGIVLLGAALIGSDWRFETVTVLAGGICIVIGALKNRKYFREVFAFRG
                     AARRNDDKLPPKSGKLRIR"
     gene            1622..2173
                     /gene="hslV"
                     /locus_tag="VLI40_10980"
     CDS             1622..2173
                     /gene="hslV"
                     /locus_tag="VLI40_10980"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015365078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HSU97745.1"
                     /translation="MHSTLPTIRATTILAVRRNGQVALGGDGQVTVGDTVMKSNAQKV
                     RTLQNGRLLAGFAGAAADAFTLFEKFEEKLKRFPDNLPRAAVDLAKDWRSDRVLRRLE
                     ALLVVASREHGFIISGTGDIIEPDDGILAIGSGGTYALAAARALVESTELDARDIVRR
                     ALTIAGEICVYTNTNITIIEPGA"
     gene            2175..3623
                     /gene="hslU"
                     /locus_tag="VLI40_10985"
     CDS             2175..3623
                     /gene="hslU"
                     /locus_tag="VLI40_10985"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HSU97746.1"
                     /translation="MASPRTQQALAKLADLTPRQIVHELDRYIVGQGDAKRAVAIALR
                     NRWRRQRAPEAIRDEISPNNIILVGPTGVGKTEIARRLAKLAGAPFVKVEASKFTEVG
                     YVGRDVESMVRDLVEAAISMVRDDRESEVEELANERVDERLLDLLLPMPEEAKPRNDV
                     QTATDDEQVFFVSESGGVTKEVEAARDRHQRTRDKLKALLLAGELDNREVEIEVRQNA
                     PVMFDMMVPQGAPEGMENFSDMLRDMMPKRTRKRTVKVPEARRILMDEELEKLIDQDE
                     LVTDALERVEQMGIIFLDEIDKIAGQRGDSGGPDVSREGVQRDLLPIVEGSTVSTKYG
                     NVKTDHVLFVAAGAFHVSKPSDLIPELQGRFPIRVELKPLTEADFVRIMTEPENALTK
                     QYAALVESEGASLTFTTDGVAEIARTAAHANDRMENIGARRLHTVMTTLLEDVLYELP
                     DGGKEPVNVDAAMVKSRLAKVVEDEDLRRYIL"
     gene            3704..4141
                     /locus_tag="VLI40_10990"
     CDS             3704..4141
                     /locus_tag="VLI40_10990"
                     /inference="COORDINATES: protein motif:HMM:NF019589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97747.1"
                     /translation="MVMDSAAILKVLAHRYPFLLVDSINVIEPGRRVEGIKRVTAGEW
                     FGAAWRPEEAAIPNTLAIEALAQTSAALLLGLVDARAGVVGYFAAIERVRLRDPAVAG
                     DTLVLSVELESFRRGIARLKGRATVNGRRVASASFTTIVRAAV"
BASE COUNT          863 a         1264 c         1298 g          788 t
ORIGIN      
        1 cgtaccatgg gccggcgtcg aatattcgtt gatcgtcgcg atgattgcgg cccccatcat
       61 tctatatccg gtgtcgcggc tgatgtggct cgcgctggac ctgttgctgc gaccgccgga
      121 tgcagcggaa atggagtggc acgcgcgaga gaggaagtaa ccagtgctcg ccattccctc
      181 gaaagcggac taaagactcg tcattcccgc gaaagcgcga atccatctga tgccgaccag
      241 ccttgtgctg ccatcgcact tgaagatcga taacatggat tcccgcttcc gcgggaatga
      301 cgactccttg acccgcatac agggagacac ctactattta cgccgcgctg tccttctcga
      361 tgacctgtcc gacaagccgg tcgtagacgt cggcgaccag gcggtaacac tcgcaggaaa
      421 cctgctccag gcccggcctg tcgacgattg ttatctcgcc ccgacggtag cggatgagtc
      481 cggccttctg gaggttgccg gctgcaaccg tcacgcctgc gcgacgcacg ccaagcatga
      541 cggcgagcgc ttcgtgagtg aggtggaaat gatcgcccgg tacccggtca tgcgtcatga
      601 gcagccatcg cgcgcaacgc tgacgcagtg aatgccgctg gttgcacacg accgactgtc
      661 cgatctgcat gaacatcgcg tgcgcgtagc ggagcatcac cgtgcgcaac gcatcgtccg
      721 accggagcaa ctcggtaaag cggtcggcgg gcatcactgc gcttcttccg ccgatctgga
      781 cgaagaaacg catgtttgcc atgtcggttc cgaagagagt cggaagtccg atcatccctt
      841 cctgacccac ggtcgcaact tcgccctggg ccgagccgac gggcgctgtc atcgatatta
      901 ccgaatcgag ggggaaatag attcggttca ccatgtcccc cgggccgtac agctccgagc
      961 gagaaggagt attgatgatc gcgagatcat cagccaaccg atgtgccgac tcggacggga
     1021 gcgcgcggag cagcaagttt tcgtcgtagt tgtccatggt acggtttagt gcaaacagct
     1081 tgccggtacc ttatggtact aagcctatat gtagcgaaaa tctacatata gttactatct
     1141 aatccgtaat ttgcccgatt ttggcggcaa tttgtcgtca ttgcgcctgg ccgcaccgcg
     1201 aaaagcgaac acttcgcgaa aatatttccg attctttagt gcgcctataa cgatacagat
     1261 cccgccggcg agcacggtca ccgtttcaaa gcgccagtca ctcccgatca gagctgcacc
     1321 tagtagcaca attcctacac cggcgacgag ctcgcccttg aggtcgatgg ctgcccgcgc
     1381 gcgacggcgc cggtcccgca tcggcccgat tgcctgtggt ccccacgaat cccagatgat
     1441 gccgagcccc atcaggatca ctacgacccc cagcacgaca ggcatttcgt acacgctcac
     1501 gatggctcca ttctctcgtc cgacctcttc tgatctctgg tctgattcgc cctgggccgc
     1561 cgatccggcc tcttcgtcac ctcagagtgc aaaaaggggg cgcacggcta tttctttagg
     1621 tatgcacagc acacttccga ccattcgcgc cacgacgatt ctggccgtgc gccgcaatgg
     1681 tcaggtcgca ctcggcggcg acggtcaggt caccgtgggc gacacggtaa tgaaatccaa
     1741 cgctcagaaa gtccgcacgc tccagaacgg ccggttgctg gccggcttcg ccggagcggc
     1801 agctgatgcg ttcaccctgt tcgagaagtt cgaggagaag ctcaagcgct tccccgataa
     1861 cctgccacga gccgccgtcg atctcgccaa ggactggcgc agtgatcgtg tgctccggag
     1921 gctggaagcg ttgctcgtgg ttgcatcgcg cgagcatgga ttcatcatct ccggcacagg
     1981 cgatatcatc gagcccgacg acggcattct cgcgatcgga tcaggaggga cctacgcact
     2041 cgctgcggcg cgtgcgctgg tcgagagcac ggaactcgac gcgcgagaca tcgtacggcg
     2101 tgcgctgacg atcgccggcg agatctgcgt gtacacgaac acgaacatca ccatcatcga
     2161 gccgggagca tagcatggct tctccacgca ctcagcaggc gctggcgaag cttgcagacc
     2221 tcacccctcg gcagatcgtg cacgagctgg accgctatat agttggacag ggtgacgcca
     2281 agcgcgctgt tgccatcgca ctgcgcaatc ggtggcgcag acagcgcgcg ccggaggcca
     2341 tccgcgacga gatctcgccg aacaacatca tactcgttgg tcctacgggc gtcggaaaga
     2401 ccgagatcgc acgtcgcctc gccaagctcg caggcgcgcc gttcgtcaag gtcgaagctt
     2461 ccaagttcac ggaggtcgga tacgtcggac gggacgtcga gtcgatggtt cgcgatctgg
     2521 tcgaagccgc gatcagcatg gtacgcgacg atcgcgaaag cgaggtggag gagttggcga
     2581 acgagcgtgt cgatgaacgg ctcctcgatc ttctccttcc gatgcccgag gaggccaagc
     2641 cgcgcaacga cgttcagacc gcaaccgatg acgagcaggt gttctttgtc tcggaaagcg
     2701 gcggcgtgac gaaggaagta gaggcggcac gcgaccgcca tcagcgtacc cgggacaaac
     2761 tcaaggcgct gttgctggcg ggtgaactgg acaaccgtga agtcgagatc gaggtgcgcc
     2821 agaatgcgcc agtgatgttc gacatgatgg tgccgcaggg agcgccggaa ggcatggaga
     2881 atttttccga catgctgcgg gacatgatgc ccaagcgcac acgcaagcgt acggtgaagg
     2941 ttccggaagc gcgcaggatc ctgatggatg aggagctcga gaagctcatc gaccaggatg
     3001 agctggtcac cgacgcactc gagcgagtcg agcagatggg aatcatcttc ctcgacgaga
     3061 tcgacaagat cgcgggacag cgcggcgata gtggcgggcc ggacgtgtcg cgcgagggtg
     3121 tacagcgtga cctgttgccg attgtggaag gctcgacagt gtccacgaaa tacggcaacg
     3181 tgaagacgga tcacgttctg ttcgtcgcgg cgggcgcgtt tcacgtatcc aagccaagcg
     3241 atctgattcc ggagctgcag ggccgctttc ccattcgcgt cgagctcaag ccgctcaccg
     3301 aagctgattt cgtgcgcatc atgaccgaac cggaaaacgc gctcaccaag cagtatgcgg
     3361 ccctcgtcga gtccgaaggt gcgtcgttga cgttcacgac ggacggtgtc gcggagatcg
     3421 cgcggacagc cgcgcacgca aatgatcgca tggagaacat cggtgcccgg cgacttcata
     3481 ccgtcatgac tacactgctc gaggacgtgc tgtacgaact tcccgatggt ggcaaggaac
     3541 cggtgaacgt cgatgccgca atggtaaagt cgcggctcgc gaaggtcgtt gaagacgagg
     3601 atctgagacg gtatatcctt tgacttccag tgcggagatg agaccgtcca cgcgcgtcga
     3661 tcgcgcagcg cacgtgccct gctcgcttcc gtgacgcaat gacatggtga tggactcggc
     3721 agcgattctg aaagttctgg cccacagata cccgtttctg ctcgtcgact ccatcaacgt
     3781 gatcgagccg ggacggcgcg tagagggaat caagcgcgta acggccggcg agtggtttgg
     3841 cgctgcatgg cggcccgagg aggcggcgat acccaacaca cttgcgatcg aggcgctggc
     3901 gcagacatcg gcggcgctgc tactcgggct ggtagatgct cgcgcagggg tagtcggtta
     3961 ttttgcggcg atcgagcggg tgcgcctccg cgacccggcc gttgccggtg acactctcgt
     4021 tctgagtgtc gagctggaga gcttccggcg cggcatcgcc cgtctcaagg gacgcgccac
     4081 ggtgaatggc cgccgtgtgg cctccgccag cttcacgact atcgttcgcg ctgcggtctg
     4141 agtccgctag aattgatgag gcagaagcag tagacatttc ccgcaatttt cgaccgatga
     4201 ccacagcaca ccg
//
LOCUS       DATIMD010000494         4423 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_778440, whole genome shotgun sequence.
ACCESSION   DATIMD010000494 DATIMD010000000
VERSION     DATIMD010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4423
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_778440"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..1823
                     /locus_tag="VLI40_10995"
     CDS             120..1823
                     /locus_tag="VLI40_10995"
                     /inference="COORDINATES: protein motif:HMM:NF013109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HSU97748.1"
                     /translation="MLVPKLVTTLKTYDRDQFLGDLTAGVIVGVVALPLAIAFAIASG
                     VPPGRGLWTAIVAGFIISALGGSRVQIGGPTGAFVVIVYGIVQKYGIDGLTVATLMAG
                     VILVVMGLAKLGSAIKFIPRPVVTGFTSGIAVIIFSGEIKDFFGLSMGAVPSAFIAKW
                     QAFGAHAGAITPAALGVSVASMAIILLWPRVNRRIPGPFVALIVMTAVVQLLHLPVET
                     IGSRFGTIAASVPHPQVPHLSLAQISALVGPAFTIAFLAAVESLLSAVVADGMIGSRH
                     RSNMELVAQGVANLAAPLFGGIPATGAIARTATNIKNGGRTPVAGMVHALTLLVITVF
                     VGQWAALVPLSVLAAILVVVAYHMSEWRTFLAELRSPKSDVAVLLTTFLLTLLVDLTV
                     GIGVGMVLAAFLFIRRMAEVTQISPIADESDEDAHAGDPYVTDPNAAHRRSVPKGVEV
                     YEINGPFFFGAAEAFRDTIGQVARKPRVLIIRMRYVPALDSTGMYALSELARRSRKDG
                     TTVLLSDVHMQPMVALSGSPALTEIGEENLFDNLDAALVRARELVGVPAVDSRAQVGA
                     R"
     gene            complement(1820..3769)
                     /locus_tag="VLI40_11000"
     CDS             complement(1820..3769)
                     /locus_tag="VLI40_11000"
                     /inference="COORDINATES: protein motif:HMM:NF044459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HSU97749.1"
                     /translation="MADTSASGFSQSNDALRAWFLGPRAENADLLERLIVEALRDHVF
                     WRRNYHPEDGFTIRETDKRTHGYEEAVSTLTQELMGLLAELKRGVPFFSGRYRAHMLS
                     EQTIAAQVGFFATMLYNPNNVSVEASPVTSRLELEVAAQLAGMIGYNPAESWGHLTSG
                     GTVANFEALWIARNVFYLPLAAAGAARDLNVELAVTLPDGTTAPLDSLALQQLLNIRT
                     SDALELWSGLWKSAPHERVTSALANHSLSTVGYQDYGRRLALDYGDPLPASVILVAST
                     AHYSWEKIIRALGIGSNQIVRIPVDSCFRLDTTALWDQIRTLSGRRVPIMACITVCGT
                     TEESAVDQLDEILAVRARAETELGVTFHVHSDACYGGYAASVTWREDGERRSAAEIRE
                     SSGCDWPDERFVRAITALGDADSVTIDPHKLGYVPYPAGAFLLKERRARELVATDPPY
                     LAPTAGLDSAEDLYLGRFIFEGSKPGAAAAAVWLSHKVLPLDASGYGHLIEQTAAGAH
                     RLYDALSTADLSPFRVVLLPQPDINIICYVIHHPSLTTLDSVNAFNERIYALMSLEIP
                     GATPEYIISRTRFQSPMYDGAIVPVLHELGVCTEADWKRAGSDGLVILRSTVMDPFLV
                     APPPAPDHVAGFVAALRRACDTVLG"
     gene            complement(3781..>4423)
                     /locus_tag="VLI40_11005"
     CDS             complement(3781..>4423)
                     /locus_tag="VLI40_11005"
                     /inference="COORDINATES: protein motif:HMM:TIGR01065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HSU97750.1"
                     /translation="SIREPVNALTHLLGAVLAAIGMVVLLVNGAANDSARQVVAFAIF
                     GTSLVLLYSTSGIYHSLNCSERGLAILRRLDHMMIYVLIAGTYTPVCLVLLRGRLGVS
                     LLIVVWIMALAGVVQKLAWMHAPRWFSTVLYLGMGWAAMILAKPLLGAAPLGFFLWII
                     AGGLFYSVGAVVYATKWPNPVPRAFGFHEIWHLFVMAGSFCHYWAVLTYVSHT"
BASE COUNT          879 a         1266 c         1393 g          885 t
ORIGIN      
        1 ctgccaacga tccaactccg ttccgcaatt cggtgtttcg cattcatctc gacgaggtca
       61 ccggtcgggc ggcaaatgga taacgagtcg ggatatcacg acgaaaccct agtatcctga
      121 tgctggttcc gaagctcgtc accacgctca agacatacga tcgcgatcag ttccttggtg
      181 accttacagc aggagtaatt gtcggcgtcg tcgcgcttcc actcgcgatc gcgtttgcaa
      241 ttgcgagtgg agttccaccc ggacgcggtt tgtggactgc gatagtcgcc ggattcatca
      301 tttccgcgct tggcggatcg cgtgttcaga tcggcggtcc taccggtgcg ttcgtcgtca
      361 tcgtttacgg catcgttcag aaatacggga tcgacggtct cacagtagca acgctcatgg
      421 cgggtgtgat actcgtagtc atgggcctgg cgaagctagg ctccgcgatc aagttcattc
      481 cgcggccagt ggtgaccggt ttcaccagtg ggattgcggt gatcatcttc tccggagaga
      541 taaaggactt cttcggtctt tcgatgggcg cagttccatc agcgttcatc gcgaagtggc
      601 aggcattcgg tgcgcatgcc ggagcgatca cgcccgccgc attaggcgtg tcagttgcgt
      661 cgatggcgat aatactgttg tggccaaggg tcaacaggcg catcccgggc ccgttcgtcg
      721 ctcttatcgt gatgacagcg gtggtgcagt tgctgcacct tccggtcgag actatcggct
      781 cgagattcgg aacgattgcg gcgtccgtgc cgcatccgca ggtgcctcac ctttcactgg
      841 cgcagatctc ggcactcgtt ggccctgcat ttacgatcgc ctttctcgcc gcggtggaat
      901 cactgctgtc cgctgtcgtt gcggatggaa tgatcggcag caggcaccgg tccaacatgg
      961 agctggtcgc gcaaggagtg gccaatcttg cagcgccgct gttcggcggt attccagcga
     1021 ctggcgccat cgcacgcacg gcgacgaaca tcaagaatgg cgggcgtact ccggtcgcgg
     1081 gaatggtgca tgcgctgaca ctgttggtca taacggtgtt tgtgggacag tgggcggcac
     1141 tcgtgccgct ctcggtgctc gcggcgattc tcgtagttgt cgcataccac atgagtgagt
     1201 ggcggacgtt tctcgcggag ctgcggtctc caaagagcga cgtggcagtt ctgttgacca
     1261 cctttctgct gacactgctg gtcgatctga cggttggcat cggtgtcgga atggtgctcg
     1321 ccgctttcct gttcattcgc cgtatggccg aggtcacaca gataagccca attgcggacg
     1381 agtccgacga ggatgcacat gccggggatc catatgtaac ggatccgaac gccgcgcatc
     1441 gcaggtcggt accgaaaggt gtcgaagtct atgagatcaa cgggccgttc ttctttggcg
     1501 ccgccgaggc attcagggat acgatcgggc aggtcgcgcg taagccgcgg gttctgataa
     1561 ttcgaatgcg ctacgtgcct gcgctcgatt ccacggggat gtacgcgctg agcgaactgg
     1621 cgcgtcgctc caggaaggat ggaacgacgg tcctcctctc cgacgtacac atgcaaccaa
     1681 tggttgcgct aagtggatcg ccggcgctca cggagatcgg ggaggagaat ctgtttgaca
     1741 atctcgatgc tgcgctcgtc cgggcgcgcg agctggtcgg cgtccccgct gtggacagcc
     1801 gggcacaggt tggtgcgcgc tagccgagca ctgtatcgca ggcgcgccgg agtgcagcga
     1861 cgaatccggc aacgtgatcg ggcgcgggcg gaggtgcaac gagaaacgga tccatcaccg
     1921 tggagcgaag gatgacgagt ccgtcgctgc cggcgcgctt ccagtcagct tcggtgcaca
     1981 cgccaagctc gtgcagcacg ggcacgatag ccccgtcgta catgggactc tggaaccgcg
     2041 ttcgtgatat gatgtactcc ggcgtcgcgc cggggatctc gagactcatc aacgcgtaga
     2101 tgcgttcatt gaatgcgttc acagagtcga gcgtagtgag cgacggatgg tgtattacgt
     2161 aacagatgat gttgatgtcg ggttgtggca gaagcaccac tctgaagggc gacagatcag
     2221 ctgtcgacaa tgcgtcgtac agacggtgcg cgccagctgc ggtctgttcg atgagatggc
     2281 cgtagccact cgcatcaagc ggaaggacct tgtggctcaa ccagacggct gccgccgctg
     2341 cgccgggttt tgaaccttcg aagatgaatc gtccgagata gagatcttcc gcggagtcga
     2401 gaccggccgt cggtgcaaga tatggcgggt cggtggcgac aagctctcgt gcacgccgct
     2461 ccttcagcag gaatgctcct gctggatagg gtacatagcc caacttgtgc ggatcgatgg
     2521 tgacggaatc agcgtcgccc agcgctgtta tcgcgcgcac gaatcgctcg tctggccagt
     2581 cgcagccaga cgactcgcgg atctcggcgg ccgagcgtcg ctcgccatcc tcgcgccatg
     2641 tcactgacgc tgcgtaaccg ccgtagcatg cgtcggagtg cacatgaaac gtgacaccga
     2701 gctccgtctc tgctcgcgcg cgtacagcga ggatctcgtc gagttgatcg actgcggatt
     2761 cctcggtcgt gccgcagacc gttatacatg ccatgattgg aacacgtcgt ccggagagcg
     2821 tgcggatctg atcccacagc gcggtcgtgt cgagacgaaa gcagctgtct accggaatac
     2881 gtacgatctg gttggatccg atgcccagcg cacggatgat cttctcccac gaatagtgcg
     2941 cggtggatgc aacgaggatt acactggctg gcaggggatc gccataatcc agagcgaggc
     3001 ggcgaccgta gtcctggtag ccgaccgtgg agagcgaatg gttcgcaagt gccgaggtca
     3061 cgcgttcgtg cggagccgac ttccagagac cgctccacag ctcgagtgca tctgaagtgc
     3121 gaatgttcag caactgttgc agagcaagtg aatcgagtgg tgcggtcgtg ccatcaggaa
     3181 gcgtgacagc gagctcaacg ttgaggtcgc gcgctgctcc agctgctgcg agtggaaggt
     3241 agaacacgtt tcgggcgatc cagagggcct cgaagttcgc taccgtgcca ccggaagtga
     3301 gatgccccca cgactcggct ggattgtagc cgatcatgcc ggccagctgc gccgcgactt
     3361 ccagctcgag acgcgaagtg actggtgacg cctcgaccga aacgttgttc ggattgtaga
     3421 gcatggttgc gaagaaaccg acctgtgccg cgattgtctg ctcggacaac atgtgcgcgc
     3481 gatatcgtcc gctgaagaat ggaacccctc gtttaagctc ggcgagaagc cccatcaact
     3541 cctgggtaag cgttgaaacg gcctcctcgt atccgtgcgt ccgcttgtcc gtctctcgaa
     3601 ttgtgaagcc atcttccgga tgataattgc ggcgccagaa tacgtgatcg cgcagcgcct
     3661 cgacgatcag gcgctccagc agatcggcgt tctcggcgcg gggacccaga aaccacgcac
     3721 ggagcgcgtc attggattgc gagaaacccg atgcagacgt atcagccatg accgtaccgc
     3781 tcaggtatga gagacgtatg tgagcaccgc ccagtagtgg cagaagcttc cagccattac
     3841 gaacagatgc cagatctcgt gaaagccgaa tgcgcgcggt actggattgg gccacttggt
     3901 ggcgtagacg acagccccca cgctgtaaaa caagccgccg gcgattatcc agaggaaaaa
     3961 tcccagcggg gcagcaccga gcagtggctt cgcgagtatc atggcggccc agcccatacc
     4021 caggtagagt acagtcgaga accagcgcgg cgcgtgcatc cacgcaagtt tctgaacgac
     4081 gcccgcgagc gccataatcc acacgacaat caggagactg accccgagcc tgcctcggag
     4141 cagcaccagg cagaccggcg tatatgtgcc ggcgatcagc acgtagatca tcatgtgatc
     4201 caggcgccgc agaattgcga ggccgcgctc cgagcaattg agcgagtggt agatgccgct
     4261 cgtgctgtac aggagcacga ggctggtccc gaatatcgcg aacgctacta cctgtcgtgc
     4321 gctgtcattg gcggctccgt tgactagcag caccaccatg ccaatcgccg ccagcactgc
     4381 gccgagcagg tgggtcagag cattgactgg ctcacgaatt gaa
//
LOCUS       DATIMD010000495         3151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_488997, whole genome shotgun sequence.
ACCESSION   DATIMD010000495 DATIMD010000000
VERSION     DATIMD010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3151
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488997"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            19..870
                     /locus_tag="VLI40_11010"
     CDS             19..870
                     /locus_tag="VLI40_11010"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSU97751.1"
                     /translation="MPDRPASNTAVGVATLRAAHQILDGPPRVLDDTVVVQLLGPETT
                     ARVREHADRFADRRASGLRAHVLLRSRYAEERLHLAVERGVKQFLVLGAGLDTFAYRQ
                     PEWAHGLRIYEVDHPTSQDAKRERLAAGSISIPGNVTFVSVDFEHETLRDRLTANGFD
                     FTVPTFVSCLGVLVYLTMDAVTDLFRFIASLTPSSEFVFTFGGHPRPLPPGVPSLAEI
                     VAASGEPFRSALDIDEVGRLCAEVGLSAPVVPTESEIASYMGDRRDGLQPPTHNSIAS
                     VMVAPRL"
     gene            909..3065
                     /locus_tag="VLI40_11015"
     CDS             909..3065
                     /locus_tag="VLI40_11015"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSU97752.1"
                     /translation="MKLSFRSLPLAASPVAFLVAFAGPSLGAQSGTAAHPSVAVSNDP
                     FVWLEQVSSPRSMTWVNAENAKTVAVLEKDPHYAALYADAVKLAEARDRIPSPSIIDG
                     QIYNFWQDAEHTHGVWRRTTLASYRSAAPAWTTVLDLDALSKTEKANWFWKGSTCAEP
                     AERRCMVHLSDGGEDAVTVREIDLPSMSFVKDGFVLPHGKQRVAWEDPNTLLVAREWA
                     PGEITKSGYPYIVKRIKRGQPLSSATEVFRGTANDGGYGVSPFTLDDGDGNHAVLISR
                     PLSTFEAEQFILTRNGFEKLALPLKSSVSGLVAGRIIITLDTAWTPVGGTAFKAGSIV
                     SVPLAVMVASPAKFAPTLVVAPGPRESISGMATTKNALILTQLENVRGRAYTYTPARA
                     NGWTRAQLKFPDNLTIGIVDADAHSNTAFLSVTGFLTPSSVWLADAQSGALSSVKSLP
                     PKFDASNDVVEQFDATSKDGTHVPYFVVHRRGMKLDGHNPTILYAYGGFQVSETPNYS
                     ANIGKLWLEHGGVWVLANIRGGGEFGPAWHEAGLKTHRQVVYDDFAAVAQDLVKRGIT
                     STRRLGIQGGSNGGLLMGVEFTQHPEMWTAVDIQVPLLDMLRYEQIAAGSSWVGEYGS
                     VSVPAERKFLEYLSPYNNVRANVKYPEPLIWTTTKDDRVGPQHARKFAAKLASMNIPY
                     MFYEVIEGGHGSGASLKERAHTTALEMTYFTRKLMQ"
BASE COUNT          625 a          929 c          986 g          611 t
ORIGIN      
        1 gcggcacatc tttgaggtgt gccagaccga ccagccagca acaccgccgt aggagtcgcg
       61 acgctccgcg ccgcgcatca gatactcgac ggaccaccgc gagtactcga cgataccgtc
      121 gtcgttcaac tactggggcc ggagacgacg gctcgggtgc gcgaacatgc tgaccgattc
      181 gcggataggc gtgcgagcgg gctccgggcg catgtactac tcagaagccg atacgcagaa
      241 gagcgactgc atctggcagt ggaacgcggc gtaaaacaat tcctcgtgct tggcgccggc
      301 ctcgacacgt tcgcgtatcg tcagccggaa tgggcgcacg gactgcgcat ctacgaagtt
      361 gatcatccga ccagccagga cgcaaaacgt gagcggctgg cggcgggttc catttccatt
      421 cccggcaacg tcaccttcgt ctcggtcgat ttcgagcacg aaacgctgcg cgaccgtctg
      481 acagccaacg gcttcgactt cacggttccg acctttgtct cctgtctggg cgttctggtc
      541 tatctgacga tggacgcggt aacggatctc tttcggttca ttgcgtcgct gacgccatcc
      601 agcgagttcg tcttcacgtt cggcggccat ccgcgaccgc tgccaccggg agttccgtcg
      661 ctcgccgaaa tcgtggctgc atcgggcgag ccgtttcgct cggcgctcga catcgacgag
      721 gtcgggagat tgtgcgccga ggtcggtctt tcggcgccag tggttcccac cgagtccgag
      781 atagcgagct acatgggcga tcgccgggat ggacttcaac cgccgacgca caacagcatc
      841 gcaagtgtga tggtggcgcc gcgcctgtag gcgcgctatt ctctccgtac cacaaactct
      901 caagggccat gaaactctcg tttcggtcac tcccgctggc agcgtcgccc gtcgcatttc
      961 tcgtcgcgtt tgccggcccg tccctgggcg cacagtccgg tacggcagca catccatcgg
     1021 ttgccgtcag caacgatccc tttgtgtggc tggagcaggt ttccagccca cgatccatga
     1081 cctgggtgaa cgcagaaaac gcgaagaccg tcgccgtgct ggagaaggat ccgcactatg
     1141 ctgcgctcta cgccgatgcg gtgaagctgg cggaggcacg cgatcgcatt ccgtcaccgt
     1201 ccataatcga cggtcagatc tacaatttct ggcaggacgc cgagcatacg cacggagtct
     1261 ggcggcgcac cacgcttgcc agctatcgaa gtgcggcacc ggcatggaca accgtgctgg
     1321 atctggatgc tctctccaaa acggagaagg cgaactggtt ctggaaggga agcacgtgtg
     1381 cggagccggc ggaacgtcgt tgcatggttc atctgtcgga cggcggcgag gatgcagtga
     1441 ctgttcggga gatcgatctg ccgagcatga gtttcgtgaa ggatggattc gtgctgccgc
     1501 acgggaagca gcgtgtcgca tgggaggatc ccaacacgtt gctggtcgcg cgcgaatggg
     1561 cgccgggtga gatcacgaag tccggatatc cttacattgt aaagcgcatc aagcgcggac
     1621 agccgctctc gagcgcgacc gaagtattcc gcggaactgc gaacgacggt ggatacggtg
     1681 tgtctccgtt cacgctcgac gatggcgatg gcaaccacgc ggtactcata tcccgtccgc
     1741 tcagcacctt cgaggccgag caattcatcc tgacgcggaa cggattcgaa aagctcgcgc
     1801 tcccgctcaa gtcgtcggtg tccgggctgg tcgcaggacg gatcatcatc acgctcgaca
     1861 ctgcgtggac gccggtcggt ggcactgcgt tcaaggctgg atccatcgta tcagttcccc
     1921 tggcagtgat ggtcgcgagt ccggcgaagt ttgcgccgac actcgttgta gcaccaggtc
     1981 cccgtgagtc catcagcggg atggcgacga cgaagaacgc gctcatactc actcaactcg
     2041 aaaatgtgcg cggacgcgca tacacataca ctccggcacg cgccaacggc tggacacgtg
     2101 ctcagctcaa gttccccgat aacctcacaa tcggaatcgt cgatgcagat gcgcattcga
     2161 atactgcatt tctgagcgtg accggctttc tgacgccgag ctcggtgtgg ttggcggatg
     2221 cacaatcggg tgcgctatcg tcggtcaagt cactgccacc aaagttcgac gcgtcgaacg
     2281 atgtggtcga gcagttcgac gcgacgtcga aggacggcac acacgtcccg tactttgtgg
     2341 tacatcggcg cggcatgaag ctggacggac acaatccaac gatcctctac gcgtacggcg
     2401 gatttcaggt atcggagacg ccaaactact cggcgaacat cggcaagctg tggctcgaac
     2461 acggcggcgt gtgggtgctt gcgaacattc gcggcggcgg tgagtttgga ccggcgtggc
     2521 acgaagctgg tctcaagacg catcgccagg tggtgtacga tgacttcgcc gcggttgcgc
     2581 aggatctcgt caagcgcgga atcacgagca cgcgccggct tggcattcag ggcggctcga
     2641 acggcggtct cctcatgggt gtcgagttca cgcagcatcc ggagatgtgg accgcggtgg
     2701 acattcaggt tccattgctc gacatgctgc gttacgagca gatcgcggcc ggcagctcgt
     2761 gggtgggcga gtatggcagc gtttctgttc cggcggagcg caaatttctc gaatacctgt
     2821 cgccgtacaa caacgttcgc gcgaacgtga agtatccgga gccgctgata tggacgacga
     2881 ccaaggatga tcgtgtcggt ccgcaacacg cacggaaatt cgccgcaaag ctcgcgtcga
     2941 tgaacattcc gtacatgttc tatgaagtga tcgaaggtgg ccatggctcg ggcgcgagcc
     3001 tcaaggagcg cgcccacacg acggcgctgg agatgaccta cttcacgcgc aaattgatgc
     3061 agtgatggac gcagtgatac gtgcagtgat tggtgtatct ttggacggtc atcatttaac
     3121 gggagatcca tcttggcgca ggaagcagga c
//
LOCUS       DATIMD010000496         2989 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2799093, whole genome shotgun sequence.
ACCESSION   DATIMD010000496 DATIMD010000000
VERSION     DATIMD010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2989
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2799093"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(97..540)
                     /locus_tag="VLI40_11020"
     CDS             complement(97..540)
                     /locus_tag="VLI40_11020"
                     /inference="COORDINATES: protein motif:HMM:TIGR00028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TA system VapC family ribonuclease toxin"
                     /protein_id="HSU97753.1"
                     /translation="MFVVDTNILIYAANRNAPEHARCRSQLDAWRSLAGAWYLTWGIC
                     YEFLRVTTHPRVMERPLSAVDAWGFIQSVLASPGVSLLVPTMRHQAVVTELINLVPEL
                     RGNLMHDATTAVLMREHGIRRIYTRDTDFHRFPEIEPIDPLVIVS"
     gene            complement(541..768)
                     /locus_tag="VLI40_11025"
     CDS             complement(541..768)
                     /locus_tag="VLI40_11025"
                     /inference="COORDINATES: protein motif:HMM:NF013561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HSU97754.1"
                     /translation="MKTTLNIDDQVMKRLRREAARLDTTMSELVETALRRLLTPQHTA
                     VALPPLPTFNAGRTLVDIANRDALHDLMDGR"
     gene            988..2205
                     /locus_tag="VLI40_11030"
     CDS             988..2205
                     /locus_tag="VLI40_11030"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HSU97755.1"
                     /translation="MKKWVEIALGIITGIGGFLEVGSIGTAAQAGSEFRYQLGWSLAL
                     GVISLAFLMEMTGRLAAVSKRTYVDLLREHFGMRFFLVALIAVFVVSFMVLTAEIDGV
                     STALEMATGISFPWWAIPVALVGWLLLWRGTFGIVEQGTAILGLLAISFAVGAIKAHP
                     DWGAVGGGLIPSRPTENPARYWYLAVSILGASISPYLYLFYSAGAVEDGWGPDYLGVN
                     WITAGLGNLFGGTLALAVIVTAAVVFAPAHIHIDKFEQIGSLFVSPLGRAGFWLFVAT
                     LCITCFGATLEIALSIAYLIAQGFGWEWSENLRPGRDSRFTSVYTIMILLAAVPAALG
                     MSALSLTNMSMVLSAASLPFTVIPLIVLMNDGAVMGGHRNGWGTNIALLCISLLSIVL
                     FFVALPLQLKGGG"
     gene            2207..2599
                     /locus_tag="VLI40_11035"
     CDS             2207..2599
                     /locus_tag="VLI40_11035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97756.1"
                     /translation="MNQLHGVQLVHDVLDACLTDRTCRKVGRVDELVITLTDGEQPRV
                     STILIGGPVRAQRIGRWMVKLRGMVSAILHHKRDAGVSRVSFSAVREIGETIELDVDA
                     ATLPSGHLERWLGDHIIDRIPGSHGEKK"
     gene            2599..2931
                     /locus_tag="VLI40_11040"
     CDS             2599..2931
                     /locus_tag="VLI40_11040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97757.1"
                     /translation="MSRDLYLSHLIGRVVRDADGHKVGRIEELLATIELHGHGNDYVV
                     AEFHIGAYALLEAFTGGVFAQTLLQRIGPIVRYRRYRVPWEWMNLSDPDHPRINRTRA
                     ELEARTDS"
BASE COUNT          529 a          885 c          938 g          637 t
ORIGIN      
        1 gtgtgattcg ttgcttgctc gggcacagcg ctggaatcta tgccgtagcc gaaccggcgc
       61 ttgcagcgct acgccgcttt ggtgcgtggg tgattgctag gatacgatta cgagcgggtc
      121 gatcggttcg atttccggaa atcgatgaaa gtcggtgtct cgcgtgtaga ttcgccggat
      181 accgtgctcg cgcatgagca cggctgtggt cgcatcgtgc atcaggttcc cgcgtaactc
      241 cggcacgaga tttatcagct ccgtcacgac tgcctggtgc cgcatcgttg gcacgagcag
      301 actcactccc ggcgacgcga gcacactctg aatgaatccc cacgcgtcga ccgctgagag
      361 cggtcgttcc attactcgcg gatgcgtggt gacgcgcagg aactcgtagc agatgcccca
      421 tgtgagatac catgcgcctg ccagtgaccg ccacgcatcg agctgtgagc ggcaccgggc
      481 gtgttccggt gcattcctgt ttgccgcata gatcaggatg ttcgtgtcga caacgaacac
      541 ttaacgtcca tccatcagat cgtgcagcgc atcacgattc gcgatatcta ccagggtgcg
      601 cccggcgttg aatgtcggga gaggaggcag ggccaccgcg gtgtgctgcg gcgtgagcag
      661 ccggcgaagc gcagtctcga ccagttccga catggtcgta tccagccgcg cggcttcgcg
      721 ccggagccgc ttcatgacct gatcgtcgat gttgagcgtg gtcttcatat ggataaccat
      781 atggcttata tggttacatg gcaagatcgt catgatcgcg gtactcataa tccgcaatat
      841 tcacgtctac gagcaattgc gcggtatcag acccgagtcc gtgtaaggcc tttccgcacg
      901 atatgcgtcg cttgcgaccg acccacatgg tcccgcgcct cgattcgcgc gattccggca
      961 gaagtcttgc catgtatcga ccacgccatg aagaaatggg tcgaaatagc actcggaatc
     1021 atcaccggca taggcggctt tctcgaggtc ggatccatcg ggacggcggc gcaggctgga
     1081 agcgagttca ggtaccagct cggctggtcc ctcgccctcg gcgtgataag tctcgccttt
     1141 ctgatggaga tgaccggacg cctcgccgcg gtgagcaagc gcacctacgt cgacctgttg
     1201 cgcgagcatt tcggaatgcg attctttctc gtggcgctca tcgccgtctt cgtggtcagc
     1261 ttcatggtgc tcacggcgga gatagatggt gtcagcaccg cgctggagat ggcgacaggg
     1321 atctcgtttc cgtggtgggc gatacctgtc gcgctggtcg ggtggctgct gctctggcgc
     1381 ggaacgttcg gcatcgtgga gcagggaacg gcgatccttg gcttgctcgc gatctcgttc
     1441 gctgtgggcg cgatcaaggc gcatcctgac tggggcgcgg tcggcggcgg attgattcca
     1501 tcgcgaccaa ccgagaatcc ggcgcgctac tggtacctgg cagtaagcat actcggtgca
     1561 tcgatcagtc catatctcta tctgttctac tccgccggcg ctgtggaaga cggctggggc
     1621 ccggattacc tcggtgtgaa ctggatcacg gctgggctcg gcaacctgtt cggcggcaca
     1681 ctcgccctcg cggtgatcgt aaccgcagcg gtcgtattcg cgccggccca cattcacatc
     1741 gacaaattcg agcagatcgg ctcgctgttc gtctcaccgc tcggacgcgc aggcttctgg
     1801 ctgttcgtcg cgacgctgtg catcacctgc ttcggcgcaa cactcgagat cgcactctcc
     1861 atcgcgtatc tcattgcgca gggcttcgga tgggagtgga gcgagaacct gcgcccgggt
     1921 cgcgactcgc gcttcaccag cgtgtacacg atcatgatac tccttgcagc ggtgccggcg
     1981 gcgctcggaa tgagtgcgct ctcactcacc aacatgtcga tggtcctctc cgcggcgagc
     2041 cttccattca ctgtgattcc gctcatcgtg ctcatgaacg atggtgcagt gatgggcggc
     2101 caccgtaacg ggtggggcac caacatcgcg ctcctctgca tctccctgct gtcgatcgta
     2161 ctgttcttcg tcgcgcttcc cctgcaattg aagggaggcg gctgacgtga accagttgca
     2221 tggagtgcag ctcgtccacg acgtgctcga tgcatgtctg accgatcgca cctgccgcaa
     2281 ggtcggtcgt gtcgatgagc tggtgatcac gttgaccgac ggcgagcagc cgcgtgtgtc
     2341 gaccatactc atcggcggac cggtacgtgc acagcgcatc ggcaggtgga tggtcaagtt
     2401 gcgcggtatg gtgtcggcga tactccatca taagcgggac gccggggtga gccgcgtttc
     2461 gttctcagcg gttcgcgaga tcggtgagac gatcgagctc gatgtggatg ccgcgacgct
     2521 gccctcgggc catctcgagc gctggctcgg tgaccacatc atcgatcgca ttccgggatc
     2581 gcacggggag aagaagtgat gtctcgcgat ctgtatctca gtcatctgat tggccgtgtg
     2641 gtgcgcgacg cggatggaca caaggtcgga aggatcgagg agctgctcgc gacgatcgag
     2701 ttgcacggcc acggcaatga ttacgtcgtc gcggagtttc acatcggtgc atatgcgctg
     2761 ctcgaagcgt tcacgggagg cgtgttcgca cagactctgc tccagaggat aggtcccatc
     2821 gtccgctatc gccgctatcg cgtgccgtgg gagtggatga atctctcaga tcccgaccat
     2881 ccacggatca atcgcacacg cgccgagctg gaagcgcgca cggattcctg acggtgacgg
     2941 acgtcgcgct cgagccacag gctcagccgc aggcgcctgc atatctgga
//
LOCUS       DATIMD010000497         8347 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3089880, whole genome shotgun sequence.
ACCESSION   DATIMD010000497 DATIMD010000000
VERSION     DATIMD010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8347
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3089880"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1679)
                     /locus_tag="VLI40_11045"
     CDS             complement(<1..1679)
                     /locus_tag="VLI40_11045"
                     /inference="COORDINATES: protein motif:HMM:NF015882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HSU97758.1"
                     /translation="MKRQDALDYHSSGRPGKIAVVPTKPLNNQRDLSLAYTPGVAEPC
                     LEIAKNPEAAWRYTARGNLVAVVTNGTAVLGLGNIGALAGKPVMEGKGNLFKQFADID
                     VFDLEVGSENPDDVIRFCQLLEPTVGGINLEDIRSPDCFYIEETLRKTMKIPVFHDDQ
                     HGTAIISGAALLNALEIAEKPISTVRVVFSGAGAAAISTAEHYVRLGVLRENILMCDR
                     AGVIYTGRAGEMDPYKARFANDTDARTLTDALVGADVFVGLSVAGAVTAAMVAPMAPR
                     PIIFALANPMPEILPDEVRSVRSDAIIATGRSDYPNQVNNVLGFPFIFRGALDVRATE
                     VNEVMKMAATRALAHLAKEDVPESVARLYGLQSVHFGPDYLIPFPFDPRVLLWVAPAV
                     AWAAVASGATSEFIDLDEYRDQLEGRLGRARGIVRGLINRAQRDPKRVVFTEGYEPKI
                     IRAAQQLVDEGIAEPILIGNPNDIHDIARRHGINMTDVAVEDPATSPLRDKYAAYLWK
                     RRQRKGLSLGEAHHQLYNSNYFGMCMVACGDADALLAGVNMHYPETIRPAL"
     gene            1968..2234
                     /locus_tag="VLI40_11050"
     CDS             1968..2234
                     /locus_tag="VLI40_11050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97759.1"
                     /translation="MVAPLSESRGFGLSAHVEAAGNHRGHFTHDEASCAACSVLSLHA
                     LSSHPAAVPSPPGHPVFRPVTTAEAWIEALQLKAIQPRAPPASV"
     gene            2309..3580
                     /locus_tag="VLI40_11055"
     CDS             2309..3580
                     /locus_tag="VLI40_11055"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU97760.1"
                     /translation="MSPARWTMLLALCASSASAQQRPDTLLLTRAAAIQLALERNPQL
                     DVAREQIAEQRAAKVQAVAIPDPAVTASLDQQPGLFRSAPAGQKNVGATLQVPFPDKF
                     RLRGNVAGADIKNAQANYVALQRQIAAQTAEQYDSLLVSLRHRSDFLEAQTLANDFLK
                     RTQARFDAGTAPRLDVIKAQVDVAAATNALISNERAIANASSGLNRFIGRPLGAPIVA
                     TDSLTVPPSLPSVDVLEREALNARPELAGLMAQRKGAHSATTLAREFWLPDLTLGVSR
                     DVSGNSGPGVFSTGLAFPLPLLFWQHTKGEVSQSLHFERELAASYRDLEAQVGQDVRT
                     AYAAASTSLRQAIYIRDALLPSAREAYRSTAASYAIGGSSAFEVIDARRTLLDAQSQY
                     SDALAAANTSRSDLERAVSVPLETIASGPNP"
     gene            3577..4725
                     /locus_tag="VLI40_11060"
     CDS             3577..4725
                     /locus_tag="VLI40_11060"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSU97761.1"
                     /translation="MRMKSFCLIAGLALLSACGKSDESANTPTPASAKPSNLTLTPAQ
                     QARIHIDTVALSKFYPSVLTTGTVAFNGDRSTQVLSPVSGPVTKLLVQPGTVVSAGTA
                     LAIVSSPDFAAAVGAYRKAVVTATNLQRIADQDVQLFKTDALSRRDLEQAQADAASAV
                     ADREAALEQIRSLGIDPSVIESATNGGSTGAVPGVIRAPIAGTVVERLITPGQLLQAG
                     ATPAFTIADLSTVWVMANVFESDLATVHKGEHVTVTSAVSPTPFDGTVDYVGALVDSS
                     TRATAVRLVVRNRNDLLKRDMYVNVAIRGDQQKSGILAPVDAVLRDDQNLPFVFVATG
                     TSPNVQYARRSVTLGQRIGDDYEILSGLNPGDRVVAEGALFLQFAESL"
     gene            4722..7910
                     /locus_tag="VLI40_11065"
     CDS             4722..7910
                     /locus_tag="VLI40_11065"
                     /inference="COORDINATES: protein motif:HMM:TIGR00914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0051139 - metal cation:proton antiporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CusA/CzcA family heavy metal efflux RND
                     transporter"
                     /protein_id="HSU97762.1"
                     /translation="MTPPDRNGPPDGPDTHDPRSALPQIEEPRSVEGAAQSFVNRIVA
                     ASLAQPLLTGILAIALIGVGAWSFSRLPVDAYPDVSPPMVEIISQWPGHAAEEVERLI
                     TVPVEAGMNGTPNLKVMRSVSLYGLSDVTMTFEDQTDTYFARQQVFERIPDLSLPDGV
                     SSSVAPMSSPSGLVYRYVIQSPDRTPMQLKNIQDWVLEKQYRAVPGVADMSSLGGQTM
                     QYQVLVDPTKLAGAGLNVSTLANALGNNNGNAGGGFYSEGGQFYYVRGLGRINTLEDI
                     ANTVVAVQNGTPVLVKDVGSVEIGYAPRLGQFGFNDQNDAVEGVILMRTGEQAQTVLK
                     RVEQKTNELNTSVLPKDVKVVPFYDRSDLIQLTTKTVEDNLLRGIVLVVVILIFFLYD
                     IRSGLIVAVSIPLALMFAFICLDLKGIPANLLSIGAIDFGILVDGAVVMVENIHRQLA
                     QRHGTAYDIKTVITAAAAEVDRPIVYAIAVIIAGFSPIYVLTGPSGRLFKPMADTTIF
                     ALIGSLLVTITLLPVVCAVVLRGGVKERRNATFEWILAQYRRGLEWSLKHAKIVLWVS
                     IGIGVACLLIITRIGGEFMPKLDEGALWVRATMPYTISFEESSKIVPQIRTIIKSFPE
                     VTLVASEHGRPDDGTDATGFFNAEFYVGLKPYGEWHGKYHTKPELIAAIDEKLRAFPG
                     ITFNYTQPAEDAVDEAETGLKSSLDAKIFGTDLNVLQERGTQIKKVLDQVRGINQVTL
                     VQELGQPALTVTADRAKMARYGLNVSDVNGLIEAAVGGSAATQVVQGEQLYDLVVRLQ
                     PQFRETADEIGSILIATPSGAQIPLREVTTLKIDNGASFIYRQDNSRYIGLQYSVTGR
                     DLAGAVEDARAQVARKVKLPPGYSIVWGGEFEEYTASRRQLQIVLPLTLAVIFILLFA
                     LYRNFKFPFITVIGVLLSAPLGGLVALWISGTPFSVSSGIGFLALFGVSVQTAVVYIS
                     YANELRLGGLGISEATLDAALLRLRPIMMTALVAALGLLPAAFSTGVGSDSQRPFAMV
                     IVGGLFSRLLLSVFLMPVLYLMVSRENDELHV"
     gene            7912..8292
                     /locus_tag="VLI40_11070"
     CDS             7912..8292
                     /locus_tag="VLI40_11070"
                     /inference="COORDINATES: protein motif:HMM:NF022610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2946 family protein"
                     /protein_id="HSU97763.1"
                     /translation="MRFRIPVTGAGARGRSRGLRVFAIAFALLQIGLQGAFAVSDGYE
                     QQACSHVAPVHAETPGNHHHRLHDSDCVVCHVLSNGATVPPRTITAWIGAARVSGAPR
                     TEIGARPYAILDGARLARAPPVTV"
BASE COUNT         1531 a         2528 c         2655 g         1633 t
ORIGIN      
        1 tcgagcgcgg gacggatcgt ctcggggtag tgcatgttca cgcctgcgag cagcgcatcg
       61 gcgtcgccgc acgccaccat gcacataccg aagtagttcg agttgtacag ctggtgatgc
      121 gcctcgccca ggctgagtcc ctttcgctgg cgtcgcttcc agagatacgc cgcatacttg
      181 tcgcgcagcg gcgacgtggc gggatcttcc acagcgacgt ccgtcatgtt tatgccgtgg
      241 cggcgcgcta tgtcatggat gtcattcggg ttgccgatga ggatcggttc agcgatcccc
      301 tcgtccacga gctgctgagc cgcgcggatg atcttgggct cgtagccctc agtgaagacg
      361 acgcgcttgg gatctctctg cgcacggttg atgagtccac ggacgattcc gcgcgcgcga
      421 ccgagtctgc cttcgagctg atcgcgatac tcgtcgagat ctatgaattc gctggtcgcg
      481 ccactggcaa cagccgccca cgcgaccgcg ggcgcgaccc atagcagaac ccgcggatcg
      541 aacgggaagg gaatcaggta gtccggtccg aagtgaaccg attgcagtcc gtacagacga
      601 gcgacactct cgggcacgtc ctccttcgcg agatgcgcaa gcgcgcgagt cgccgccatc
      661 ttcatcactt cgttcacttc ggttgcacgc acgtccagag cgccgcggaa gatgaacgga
      721 aatccgagaa cgttgttgac ctgatttgga taatcactgc gccccgtcgc aatgatcgca
      781 tcggagcgca cggagcgaac ctcgtcgggg agaatctccg gcatcggatt ggcgagcgcg
      841 aagatgatcg ggcgcggcgc catcggagca accatcgccg ctgtcaccgc gcccgctacg
      901 gaaagcccga caaacacatc ggcgccgacg agcgcgtcgg tcagagtccg cgcgtcggtg
      961 tcgttggcaa agcgtgcctt gtacggatcc atctcgcccg cgcgtccggt gtagatcacg
     1021 ccagcgcgat cacacatcag aatattctcg cgcaacacgc cgagccgcac ataatgctcg
     1081 gcggtggaaa tcgcagcggc gccggcgccc gagaagacta cgcgtaccgt cgagatcggc
     1141 ttttcggcga tctcgagcgc gttgagcagt gccgcaccgg agatgatcgc ggtgccatgc
     1201 tgatcgtcgt ggaagaccgg tatcttcatg gtcttcctga gcgtctcttc tatgtagaag
     1261 cagtcgggcg agcggatgtc ttcgaggttg atgccgccga ccgtcggctc gagcagctgg
     1321 cagaagcgga tcacgtcgtc cggattttcc gagccgactt cgaggtcgaa gacgtcgatg
     1381 tccgcgaatt gcttgaagag atttcccttg ccttccatca ccggcttgcc tgcaagcgcg
     1441 ccgatgttgc cgaggccaag gaccgcggtg ccgttggtaa ctacggcgac caggttgccg
     1501 cgcgccgtgt agcgccaggc agcctcgggg ttttttgcga tttcaagaca gggctcggcc
     1561 accccgggcg tgtatgccag ggatagatct cgctggttgt ttagcggctt ggtaggtacg
     1621 acggcaattt tgccgggccg gccggagctg tgataatcga gagcgtcttg tcgtttcatc
     1681 taaggcttcc aaagatcgca tgcagggggc ccgtggcgcc accctgcgcc gattttgccc
     1741 tgcagggcag ctccccgcgc tgtcctgaga ggcgagtgcg agcccgagcg cgagccggag
     1801 ccagagtgcg aggcgggtac gtagcgtttc gggcactggt gcgtagtacg ggtgcaggta
     1861 tacgattaga ccggatgctg agaccgactc aaagcgtacg acgcagtagc ggacggtggg
     1921 gatggcggct ggcagcattg ctggccattc ttgcccaatg ctggatagtg gtggctcccc
     1981 tctcggagag ccgcggcttc gggctgtccg cgcacgtcga ggccgcgggg aaccatcgtg
     2041 gtcacttcac gcacgacgag gcgtcgtgcg cggcgtgctc cgtgctgtcg ctccacgcgc
     2101 tgagctcgca tccggcggcg gtgccgagcc cgccgggcca tcctgtcttc cggcccgtca
     2161 ccaccgctga agcgtggatc gaggcgcttc agctcaaagc gatccagccc agagcgcctc
     2221 ccgcgtctgt gtagtccgcg tccggttgtc cggggcattt ccgcacccgt gagcgttacc
     2281 ggcccgtcaa cacaactaga gagagcgcat gtccccagca cgctggacga tgctgctcgc
     2341 actctgtgcg agcagcgcgt ctgcccaaca acgtcccgat acactgctac ttacccgtgc
     2401 ggccgcgatt cagctggcac tggagcgcaa tccgcaactc gacgtcgcgc gcgagcagat
     2461 cgcagagcag cgcgccgcca aggttcaggc tgtcgcgatt ccggatccgg cggttacggc
     2521 ttcactggat cagcagcctg gtctgttccg ctccgctccc gcggggcaga agaatgtcgg
     2581 cgcgacgttg caggttccgt ttcctgacaa gttccgcctg cgcggcaacg ttgcgggcgc
     2641 ggatatcaag aacgcgcagg cgaactacgt cgcgctgcag cggcagatag ctgcgcagac
     2701 cgccgagcaa tacgactcgc tgctggtctc gctgcgccat cgcagcgatt tcctcgaagc
     2761 acagacgctc gcgaacgatt ttctcaagcg cacgcaggcg cggttcgatg cgggaacggc
     2821 tccgcgcctc gacgtcatca aggcgcaggt ggacgttgcc gcggcaacca atgctctgat
     2881 ctcgaacgag cgcgcgatcg ccaatgcgtc gtcgggactt aaccgtttca tcggacggcc
     2941 gctcggtgct ccgattgtcg cgaccgattc cctgacggtg cctccctcgc tgccatccgt
     3001 cgacgtgctc gagcgcgagg cgttgaatgc gcgaccggaa ctcgccggac tgatggcgca
     3061 acgcaagggc gcgcactccg ccacgactct ggcccgtgag ttctggctcc cggacctgac
     3121 actcggcgtg tcgcgcgacg tgtcgggcaa cagcgggccc ggcgttttct cgaccggact
     3181 cgcattccca cttccattgc tgttctggca gcacaccaag ggcgaggtga gccagtcgct
     3241 gcacttcgag cgcgagctgg ccgcgtccta ccgcgatctc gaggcgcagg tcggccagga
     3301 tgtccgaacc gcatacgctg cggccagtac ttcgctgcgg caggcgatct acatacgtga
     3361 cgcgctgctg ccgtccgcgc gcgaggccta tcgatcgacc gccgcgagct acgcgatcgg
     3421 tggatcatcc gcgtttgaag tcatcgatgc acgccgcact cttctcgatg cgcagagtca
     3481 gtattccgac gcactggctg cggccaacac gtccagatcc gatctggagc gcgctgtaag
     3541 tgtgccacta gaaaccatcg cttccggacc gaacccatga gaatgaagtc attctgtttg
     3601 atagctggcc tcgctctcct ctcggcttgc ggaaagtcgg acgaatcagc gaatactccg
     3661 actccagcgt cggcgaagcc gtccaacctc acactgactc ccgcgcaaca ggcgcgcatt
     3721 catatagaca cggtcgcgct gtccaagttt tatcccagtg ttctgacgac cggtaccgtc
     3781 gcattcaacg gcgacagatc gacgcaggtg ctgtcacccg tttcgggccc ggtaaccaag
     3841 ctgctcgttc agcccggcac tgtggtttcg gcgggtaccg cgctggccat cgtttcatcg
     3901 ccggacttcg ccgcggccgt tggtgcctat cgcaaggccg tggtaacggc gacgaacctc
     3961 cagcggatcg ccgatcagga cgtgcagctc ttcaagaccg acgcactctc tcgccgcgat
     4021 cttgagcagg cacaggccga tgcggcatcc gcggtcgccg atcgggaggc ggcgctcgag
     4081 cagataagat cgctcggcat cgatccatcg gtgatcgaga gcgcaacgaa cggtggcagc
     4141 accggagcgg taccgggggt gattcgcgcg ccgatcgccg gaacggtggt tgagagactc
     4201 atcacgccgg gccagctgct gcaggcaggc gcaactccgg cgtttaccat cgcggatctg
     4261 tcgacagtct gggtcatggc gaacgtgttc gagtccgatc tcgcgaccgt gcacaagggt
     4321 gagcacgtga cggtaacgag cgcggtaagt ccgacgccat tcgacggaac tgtcgattac
     4381 gtcggtgcgc tggtcgattc gtcaacacgt gctaccgcgg tacgtctcgt cgtccgcaat
     4441 cgcaatgacc tgctcaagcg cgacatgtac gtcaacgttg caatcagggg cgatcagcag
     4501 aagtcgggaa ttcttgcgcc ggttgatgcc gtacttcgtg acgatcagaa tctcccgttc
     4561 gtgttcgtcg cgactggcac ttcgcccaac gtgcagtacg ctcgtcgcag cgtgacactc
     4621 gggcagcgca ttggcgacga ttacgagata ctctcgggtc tgaatccggg tgatcgcgtg
     4681 gtcgcggaag gagcgttgtt cctgcagttc gcggagagcc tgtgacgcct cctgatcgca
     4741 atggaccgcc ggatggaccc gacacgcacg atccacgaag tgcgctccct cagatagagg
     4801 agccgaggtc ggtggagggc gcagcgcaat cgttcgtgaa tcgcattgtc gccgcgtcgc
     4861 tggctcagcc gctgttgacc gggattctgg cgatcgcctt gattggcgtc ggcgcgtggt
     4921 cgttctcgcg actccccgtg gacgcatatc cggacgtctc gccaccgatg gtcgagatca
     4981 tatcccagtg gccgggccac gccgccgaag aggttgagcg gctgatcacc gtgcccgtcg
     5041 aagcgggtat gaacggcacg ccgaatctga aagtaatgcg atcggtgtcg ctgtacggat
     5101 tgtcggatgt gacgatgacg ttcgaggacc agaccgacac gtatttcgcg cggcagcagg
     5161 tgttcgagcg catacctgac ctgtcgctgc cggacggtgt gtcatcgtcc gtagcgccga
     5221 tgtcgtcgcc gtcgggactg gtatatcgct acgtgatcca gagtccggat cgcacaccga
     5281 tgcaactcaa gaacatccag gactgggtac ttgagaagca gtacagggcg gttcccggcg
     5341 ttgccgacat gtcgtcgctc ggcggccaga ccatgcaata tcaggttctg gtcgatccaa
     5401 ccaagcttgc gggagcgggg ctgaacgtgt cgacgctcgc caacgcactc ggcaacaaca
     5461 acggcaatgc gggtggcggt ttctactccg agggtggaca gttctactat gtccgcggac
     5521 tcggccgcat caatactctg gaagatatcg cgaacacggt agtcgccgtg cagaacggga
     5581 cgccggtgct ggtgaaggac gtcggatccg tcgagattgg ctacgcgccg cgtctgggtc
     5641 aattcgggtt caacgaccag aacgatgcag tcgaaggcgt gatcctgatg cgcactggcg
     5701 aacaggcgca gacggtgctc aagcgcgtgg agcagaagac gaacgagctc aacacgagcg
     5761 tccttccaaa ggacgtgaag gtcgtcccgt tctacgatcg cagcgatctg attcagctca
     5821 cgaccaagac cgtggaggac aatctgctcc gcggtatcgt gctcgtcgtc gtgattctga
     5881 tcttcttcct gtacgatatc cgatcgggac tcatcgtagc agtatcgata ccgttggcgt
     5941 tgatgttcgc tttcatatgc ctcgatctca agggaattcc cgcgaacctg ctgtcgatcg
     6001 gagctatcga tttcggaatt ctggtcgatg gcgccgttgt gatggtggag aacatccatc
     6061 gacaactggc gcaacggcac ggtactgcct atgacataaa gaccgtgata acggccgcgg
     6121 ccgcggaagt ggaccgtccg atcgtgtatg cgatagccgt aatcatcgcg ggcttctcac
     6181 cgatctacgt ccttacgggg ccatcgggcc ggttgttcaa gccgatggcg gacacgacga
     6241 tcttcgcgct gatcggatcg ctgctcgtca ctatcacgct gcttccggtg gtgtgcgccg
     6301 tggtattgcg tggaggagtc aaggaacgcc ggaacgcaac gttcgaatgg attctggcac
     6361 agtacagacg cggcctcgaa tggagcctca agcatgcgaa gatcgtgctc tgggtgtcga
     6421 tcggtatcgg cgtcgcgtgc ctgctgatca tcacgcgcat cggcggcgag ttcatgccca
     6481 agctggacga gggcgcgctc tgggtgcgtg cgacgatgcc gtatacgatc tccttcgagg
     6541 agtcgtcaaa gatcgttcct cagatcagga ccatcatcaa gtcgttccct gaagtcactc
     6601 tggtggcgtc ggagcatggg cgtccggatg acgggactga cgcaaccgga ttcttcaacg
     6661 ccgaattcta cgtcgggctc aagccgtacg gagaatggca cggcaagtat cacacaaaac
     6721 ccgagctgat cgccgcgatc gacgagaagt tgcgcgcgtt tcccggaatc actttcaatt
     6781 acacgcagcc ggcagaagac gcggtggacg aagcggagac gggcctcaag agctcgctcg
     6841 acgcgaagat attcggaacc gatctgaacg tgctgcagga gcgcggaacc cagatcaaga
     6901 aggtgctgga tcaggtacgt ggcatcaatc aggtcacact cgttcaggaa cttggccaac
     6961 cggcactgac tgtgacggcg gatcgcgcca agatggcgcg ctacggcctc aacgtgtccg
     7021 acgtgaatgg tctcatcgag gctgcggtcg gtggttcagc cgcgacgcag gttgtgcagg
     7081 gcgagcagct gtacgacctg gtagtgcgat tgcagccaca gttccgcgag actgcggatg
     7141 aaatcggaag cattctcatc gctacaccga gcggtgcgca gataccgctt cgtgaagtga
     7201 cgacgctcaa gatcgataac ggcgcgtcgt tcatctatcg gcaggacaac tcacgctaca
     7261 tcggtctgca atactccgtc acgggacgcg atctggcagg cgcggtagag gatgcgcgtg
     7321 cgcaggtcgc acggaaggtg aagcttccac ccggctattc gatagtatgg ggcggtgaat
     7381 tcgaggagta cacggcgtcg cgtcgccagc tccagatagt gttgccgttg acgctggcgg
     7441 tgattttcat cctgctgttc gcgctgtaca ggaacttcaa atttcccttc atcactgtaa
     7501 tcggcgtgct cctctcggcg ccgctgggcg gactcgtggc gttgtggata tcggggactc
     7561 cattctcggt atcgtccgga atcgggttcc tggcgctatt cggcgtatcg gtccagacgg
     7621 ctgtcgtgta catctcgtat gccaacgagc tgcgactcgg cggactcggg atttccgagg
     7681 cgacgctgga tgcagcattg ttgcggttgc gacctatcat gatgaccgcg ctggttgcgg
     7741 cgctgggcct gcttcctgca gcgttctcca ccggcgtcgg gtccgactcc cagcggccat
     7801 tcgcaatggt gattgtggga gggctctttt cacgactcct gttgagcgtg ttcctgatgc
     7861 ctgtgttgta tctgatggtg tcgcgcgaga acgacgagct gcacgtatag agtgcggttt
     7921 cggattccgg taactggcgc gggcgcgcgt ggacgatcgc ggggactcag agtcttcgcg
     7981 atcgccttcg cgctgctgca aatcgggctg cagggggcat tcgcagtcag tgacggttat
     8041 gagcagcagg cctgctcgca cgtcgcgccg gtgcatgccg agacaccagg caaccaccac
     8101 catcgcctgc acgacagcga ttgcgtcgtg tgccacgttc tttcgaatgg cgcgacagtt
     8161 ccgccgcgca ccattacagc gtggatcgga gcggcgcgcg tttccggcgc gcctcggacc
     8221 gagatcggtg cgaggccgta tgcaatcctc gacggcgcgc gactcgctcg cgcgccgcca
     8281 gtgacagtgt gatctgacgg cggaggcaat gcctccgcca tggattcccg tcgctgccac
     8341 atgctgg
//
LOCUS       DATIMD010000498         8970 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1647706, whole genome shotgun sequence.
ACCESSION   DATIMD010000498 DATIMD010000000
VERSION     DATIMD010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8970
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1647706"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..728
                     /locus_tag="VLI40_11075"
     CDS             78..728
                     /locus_tag="VLI40_11075"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HSU97764.1"
                     /translation="MQRPDVVHTRDNRWSTLSEGNALLIKPAAWTTKLHSKILFAVTA
                     VAVATAPVGAQSYWGQTFTVPGTPNIFLQSVSAPGFHATQGTNYVAQIFAVDGTNLTG
                     PSLFQQALPSSFSGFSLTPNINLTPGGLFAVVVNAQLGLGTFADQGFADGALIYCASS
                     STCNAISGDDFDSQGFSVQFGAATTTPEPGSLALLATGLVGLVPVARRKIRQGTSR"
     gene            904..1770
                     /locus_tag="VLI40_11080"
     CDS             904..1770
                     /locus_tag="VLI40_11080"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSU97765.1"
                     /translation="MHHGDVLLFRFNVQMIDLARVNEAVDQGWAHVRNTPGYLSEREA
                     RFIMTALALAPAEGANVEIGSFKGRSTVGLGTVARILGLDPVHAIDPHTSPSTTDPNL
                     NGATTSYDDFITHVESTGSSTHVVPHRAFSHDVAKTWTKPIRFLWIDGDHTYAGAHAD
                     VEMFKPFLADGAIVAMHDVLGTFEGSLRVFVEDVLDSDDFGPAGFSGSIGWAQFRPKD
                     GHTLRYRVQRRLLAIPARRLIPVAQSGRNLAGWNKYVYKFWRPLAPHGDVDAGRLARQ
                     LVIQPVAHTSSL"
     gene            1917..2288
                     /gene="rpsF"
                     /locus_tag="VLI40_11085"
     CDS             1917..2288
                     /gene="rpsF"
                     /locus_tag="VLI40_11085"
                     /inference="COORDINATES: protein motif:HMM:TIGR00166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HSU97766.1"
                     /translation="MTREYEAVYIFDSALEDAAITEKLSRHHGLLSLTEDAKLDIWGR
                     RQLAYKIGRHENGYYVVARFAADTTTLPEFERSLKLDDGVIRYLISLYEHELGIPADR
                     VEANAARARALAEEEDDEDED"
     gene            2292..2516
                     /gene="rpsR"
                     /locus_tag="VLI40_11090"
     CDS             2292..2516
                     /gene="rpsR"
                     /locus_tag="VLI40_11090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HSU97767.1"
                     /translation="MARRNKKVSPVLEAGIRFIDYKDERFLSRFITENGKILPGRLSG
                     VDARHQRQLARAIKRARYLALLPYTRSQGA"
     gene            2536..3549
                     /locus_tag="VLI40_11095"
     CDS             2536..3549
                     /locus_tag="VLI40_11095"
                     /inference="COORDINATES: protein motif:HMM:NF021506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2232 domain-containing protein"
                     /protein_id="HSU97768.1"
                     /translation="MSRLLAPGWRSALLALLAFLVLPDFPSALRSVVPITETWILLAA
                     MLAVCAALGWWNGGGVWLAVVAIILAWYAATAPAGPGPGSYRSLVHGWTLLLAASFGL
                     ASLLTPGDKFLTRALAALGIASVVAFAVTIATPDGISAVRSVMKTEFNRRTDETVAVV
                     NDMAASPAWQRAVQRSPSLDSMVKSNEADLRKIASRSTRTVPALVALESLLTLALAWV
                     IYHRVASVDLGPALGSAKQFRFNDQLIWGLAVGATIFFLPVFADGRDAGLNLLVFFGA
                     LYLFRGVGVLSFMTRGKWAATLLIVMTVLAPLLLGALALGVGVGDTWMDWRTRANVDT
                     KGD"
     gene            3604..4047
                     /gene="rplI"
                     /locus_tag="VLI40_11100"
     CDS             3604..4047
                     /gene="rplI"
                     /locus_tag="VLI40_11100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HSU97769.1"
                     /translation="MEVILRQAVEKLGHTGDVVSVSNGYGRNYLLPRGVAYLATEGNK
                     RKIEQERQRLETAEEARRGSARELADKLEQVSLTFSARVGEEGKLFGSVTSSDIAAQL
                     AAQGLHVEKRQIELHEPIKALGVYRVPVRLHADVHPEIKVWVIKQ"
     gene            4325..4711
                     /gene="rsfS"
                     /locus_tag="VLI40_11105"
     CDS             4325..4711
                     /gene="rsfS"
                     /locus_tag="VLI40_11105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HSU97770.1"
                     /translation="MAATTASTSIAAAQRAAAVCIDVKANDVVILNLEGVSDMTDCFL
                     IASGTSDTHVRSIAEHVMAELRKQGMRAHHVEGLSQGRWVLLDYVDFLVHIFHPTLRD
                     FYQLERLWGDAEVVPVKAEHVTESIK"
     gene            4708..7896
                     /locus_tag="VLI40_11110"
     CDS             4708..7896
                     /locus_tag="VLI40_11110"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HSU97771.1"
                     /translation="MTVASRVFGVLAAAALLVSAAPASAQRYFGQNQVKYRYFRWRVL
                     ETEHFLIHYYPEEKLPVHDAARMAERSYSRLSRLLGHQFREKKPILLYASRQDFGQSN
                     INGDLGEGVGGVTEPMRQRIELPFTGDYDSFEHVLTHEMVHQFQFDVFSEGKAGANIQ
                     TLEQVNPPGWFMEGMAEYLSLGPNHPLTTMWIRNAVENGSMPTIKQMTDDPDDYFPYR
                     YGEALWRYIGERWGDGAIGEILQSVTTMGIDRGFEHELGITLPQLSDQWRAATREEYL
                     PQLASMQRVRDFATPLLTPKITGGSIFIAPVLSPDGKTIAFLSNGSVKKGEIFIDLYL
                     GDAATGKRIKRLVRTTTNPRFEELRLLYSQGSFSPDSKKFAFTAQTEGRDVLSIADVA
                     TGDVVQYDKLPLDGVLSPSYSPDGKHIVFSGFADGITDLYVVDVDGKNLRRLTSDRYA
                     DEMPSWSPDGTHIAFATDRASTDLPTLKLGKMQIAVYDLQSGTSEVLPGQKGLSINPV
                     WSPDGKSIAYVSDRNGTPNIYLHNLSSNEDLRVTNVQSGVSQFTETSPVMSWSRATDR
                     LAFTYFDRNDFTVWYIDHPQQYATAIPAQAAATVASGAGPTAPVRDSTPGRASNAIST
                     YRSANGSRQSSTLSEAEKSDSTNVSSVATVLADPVTGMPDTLTFKDYPYHVSFQPDYI
                     SGGTVGVSTGSGYGTQYGGGTTLVFSDLTGDHQLAVGGGVYGRIQDASLLFAYANMSH
                     RWQYITGLSQDVAYLNTAAQASPDGTQYQFQFLRYVMRSASITAAYPLNRFQRFELGL
                     GASAIGRGFVTQTYDNFGNFSQSNGQSLGTLSFLSPNAAYVTDNSLFGVTGPISGRRM
                     RFAVSPAIGNLKFINYTADYRRYDPVVFNALTFATRLFFNASYGRDAFQLPIYVGSPD
                     FVRGYDQSSFYGGYSCSSFLNTGSVYANGCSAPQLIGTRAVVFNEELRFPIIRRFDLG
                     ALPIGIPPVDGALFYDAGLAWNAGQAIHFARPRNFNPNLDIDRYFLRSYGGTIRVNLF
                     NLAILNWSYSRPLDRPGSNGAWNWTFALGVAY"
     gene            8004..>8970
                     /locus_tag="VLI40_11115"
     CDS             8004..>8970
                     /locus_tag="VLI40_11115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97772.1"
                     /translation="MHRRLSISLLLLAAIACGRGRKANTDTVGNAASAEAARGPDPIL
                     IRLPRKGGTVRAYLYPRLDSVVWTGHTTSVDRVLGFDPEGGALAIIDAKGQPARVDLR
                     LGESAIATKTQLTSLTSPTGTDIYGVDDKGTVVRLTRSADWKFTPPYPARAVFPQADG
                     SLVIDAQHGADAVLWLMHPPDTSLRDTVTLPITMRAVHAQVGDRVYVATDTALVGVRG
                     RDLSEVPPIRVHGHIVAVAPTPSGDRIYVATTGDSALAVVDRYTDKVASTIRLPGEIS
                     DLRMDGLGRYVIARPIRGDSAWVIAVATNHVIGSVRTKWTEDLPAT"
BASE COUNT         1724 a         2736 c         2740 g         1770 t
ORIGIN      
        1 gttgtcgtaa cccgctgaag tcatgttggc gtgaatagtg cccagtgcgc tgctcaacgc
       61 gcctcccgtg gagacgaatg caacgtcctg acgtggtgca cactcgcgac aaccgctggt
      121 cgactctttc agagggaaac gcattgctga tcaagcctgc tgcctggaca accaaacttc
      181 acagtaaaat tttgttcgcg gtcactgctg tcgcagttgc cactgcgccg gttggtgcgc
      241 agtcatactg gggacaaacg tttacggtcc cagggacacc aaacatattc ctccagtcag
      301 tcagtgctcc agggtttcat gctacccagg gtaccaacta cgttgcacag attttcgccg
      361 ttgacgggac gaatctcaca ggacccagcc tgttccagca ggcgttgcct tcctcatttt
      421 ccggcttcag cctcaccccg aacatcaact tgactcctgg cggcctgttt gccgtcgtag
      481 tgaacgctca gctcgggttg gggacattcg ctgatcaggg gttcgcggac ggtgcgctga
      541 tctactgcgc tagcagtagc acgtgcaacg cgatatctgg cgacgatttc gactctcagg
      601 gcttcagcgt ccagttcggc gcggcaacga cgacgccaga gccgggatcg ctcgcgctac
      661 tggccaccgg cctggttgga cttgtccctg ttgcgcggcg caaaatcagg caagggacga
      721 gtcggtagac ctcgtgaatc aactcggtga gtaatgctcg aataccgagg catgtgatgg
      781 cccggcctgc agccgggcca tttgtttttg tgctcggcga caaggtggcg cgcctggttt
      841 ccgcccaggt cgctggctgc acgccggagc gacgatgtgc ggtccgaagg aaaggagtac
      901 gttatgcacc atggtgatgt gcttctgttc aggttcaacg tccagatgat cgatctcgct
      961 cgagtcaatg aagctgtaga tcagggatgg gcgcacgtgc gcaacactcc cggctatctg
     1021 tcggagcgcg aggcgcgctt catcatgacg gcgcttgcgc ttgcgcctgc cgaaggcgcg
     1081 aatgtggaga tcggaagctt caaggggcgc tcgacagttg gcttgggaac tgttgcgcgc
     1141 attcttggac tcgatcccgt gcacgcgatc gacccgcata catcaccgtc gacgaccgat
     1201 ccaaatctga atggcgcgac gacgtcgtac gatgatttca tcacgcacgt ggagagcacg
     1261 ggcagcagca cgcacgtcgt cccacatcgc gcattttcgc acgacgtggc gaagacgtgg
     1321 acgaagccga ttcgttttct atggatcgac ggcgatcaca cgtacgccgg tgcgcatgca
     1381 gacgtcgaga tgttcaagcc atttctggct gacggtgcca tcgttgcaat gcacgatgtg
     1441 ctcggcacct tcgaaggatc gctccgtgtg ttcgtcgagg atgttctcga ctccgatgac
     1501 ttcggtcccg cagggttcag cgggtcgatc ggctgggcgc agttcaggcc gaaggatgga
     1561 cacacactca gatatcgcgt gcaacgtcgt ttgctggcga taccggcgcg ccgattgatt
     1621 ccggtggcgc agagtggacg caatctcgcg gggtggaaca agtatgtcta caagttctgg
     1681 cggcctctgg cgccgcacgg cgatgtggat gcgggaaggc tggcgcgcca actcgtgatc
     1741 caaccggttg cccatacatc atctttgtga ctacgccgta ccggagagct ttttgatctg
     1801 agttggtctc cctccgccgc acagctatat tgtaaggcta cacaaaaacc catcccttcc
     1861 ctcggttacg gcaaccagcc gggggcggtt atgaccacaa ggaggattgc cagcacatga
     1921 ctcgtgaata cgaggcggtg tacatcttcg attctgcact cgaagacgcc gccatcaccg
     1981 agaagctgag ccgccatcac ggcctgctca gtctcaccga agacgccaag ctcgacatct
     2041 ggggccgccg tcagctcgcc tacaagatcg gccggcatga gaacggctat tacgtggtcg
     2101 cgcgcttcgc cgccgacacc acgacgctcc ccgagttcga gcgctcgctc aagctcgacg
     2161 atggcgttat ccgctatctc atcagcctct acgagcacga gctcggcatt cccgccgacc
     2221 gtgtcgaggc caacgccgcg cgcgcccgcg cactggcgga agaagaagac gacgaggacg
     2281 aggactaacc catggccaga cgcaacaaga aggtctcgcc ggtgctggaa gccggcatcc
     2341 gcttcatcga ctacaaggac gagcgctttc tcagccgctt catcaccgaa aatggcaaga
     2401 tcctgcccgg ccgcctgagc ggcgtggacg cccggcatca gcgccagttg gcgcgcgcaa
     2461 tcaagcgcgc ccgctacctc gcgctgcttc cgtacacgag gagccagggc gcctagtcag
     2521 gcgctcgatc aagctgtgtc acgtctcctc gcacccggtt ggcggtccgc gcttctggcg
     2581 ctcctcgcct tcctggtgct cccggacttt ccgagcgcgc tgcggtcggt ggtaccgatc
     2641 acggagacgt ggatcctgct cgcggcgatg ctggcagtct gcgctgcgct gggctggtgg
     2701 aacggcggcg gtgtatggct ggcggtcgtc gcaatcattc tcgcctggta cgccgccacg
     2761 gctcccgcag gaccgggacc tggcagctac cggtcgctgg tacacggatg gacgctgctt
     2821 ctggcggcgt cgttcggcct tgcgtcgctg ctgacgccgg gcgacaagtt tctgacaagg
     2881 gcgctcgcgg ctctcggaat cgcatcggtc gtggcgttcg cggtgacaat cgcgacgccg
     2941 gacgggattt cggcggtccg gtcggtgatg aagaccgagt tcaaccggcg cacggacgaa
     3001 accgtggccg tggtgaacga catggcggca tctccggcgt ggcagcgagc agtgcagcgc
     3061 agtcccagcc tcgacagcat ggtaaagtcg aacgaggccg atctgcgaaa aatcgcaagt
     3121 cgttcgaccc gcaccgttcc ggcgctggta gcactcgaat cgctactgac tctggcactc
     3181 gcgtgggtga tctatcatcg agtcgcctcg gtcgatctcg ggccggcgct cggctcggcg
     3241 aagcagtttc gcttcaacga ccagctcatc tggggtctgg ccgtcggcgc gacgatcttc
     3301 ttccttccgg tgttcgcgga cggacgcgat gctggattga atttgctggt gttctttggt
     3361 gccctgtatc tcttccgcgg tgttggcgta ctgtcgttca tgacacgcgg aaagtgggca
     3421 gcgacgctcc tgatcgtcat gacggtcctt gcgccgctcc tgctcggagc tctggcactt
     3481 ggtgttggtg tgggcgatac gtggatggac tggcgcactc gcgcgaacgt ggatacgaaa
     3541 ggtgattgac gttcaacctg aagacgttca acaagacgtt caacaaacgg agttgaggta
     3601 aacatggaag tcattcttcg gcaggcggtc gagaagctcg gccacacagg cgacgtcgtg
     3661 agcgtctcca acggttacgg ccgcaactat ctccttcctc gcggtgtcgc gtacctcgcg
     3721 accgagggca acaagcgcaa gatcgagcag gagcgtcaac ggctcgagac cgctgaagag
     3781 gcacgccgcg gatcagcgcg cgagctcgcc gacaagctgg aacaggtctc gctcaccttc
     3841 tctgcacgcg ttggagagga aggcaagctg ttcggatcgg tcacttcgag cgacattgcc
     3901 gctcagctcg ccgcgcaggg tctccacgtg gagaagcgtc agatcgagct tcacgagccg
     3961 atcaaggcgc tcggcgtcta tcgcgtgccg gtgagactgc acgccgacgt acatcccgag
     4021 atcaaggtct gggtaatcaa gcagtagggc gctgcagggc gcggatttat ccgcgcctcg
     4081 gggatccaag ttcagaagag ctgtccgtgg gctccctgtg acgcctttcg ggggatggcg
     4141 ggtcttaact gaccgccatc ccccgccgtc ttatggctac acaccgtgcc agagcggcca
     4201 ctcgtcccgc aacataaatg ctcatgccac aattggcgca cgaaatgctg tttcgtgtgt
     4261 agaattagcg ctgtggagta cacagggcga accccccgta atccgaattc gtttcaggag
     4321 tagaatggct gccacaaccg cttcgacttc cattgccgcc gcgcagcgcg cagcggccgt
     4381 atgcatcgac gtaaaagcaa atgacgtagt aatcctcaat ctcgagggtg tcagcgacat
     4441 gactgactgc tttctgattg caagcggcac ttccgacacg cacgtgcgct cgatcgccga
     4501 gcacgtgatg gccgagttac gcaaacaggg aatgcgcgcg catcacgtcg aggggttgag
     4561 tcagggacgg tgggtacttc tggactacgt ggatttcctg gtgcacatct ttcatcctac
     4621 gttgcgcgat ttctatcagc tcgagcggct gtggggcgac gcggaagtcg ttccggtcaa
     4681 ggcagagcac gtcacggaga gtataaaatg actgtcgctt cgcgggtgtt cggagtgctg
     4741 gccgctgctg cgctgctggt ttccgcagca ccagcgagcg cacagcgtta cttcggccag
     4801 aaccaggtca agtaccgcta tttccgctgg cgtgttctgg aaacagagca cttcctgatt
     4861 cactactatc cggaagagaa gctccccgta cacgacgcag cacgcatggc cgagcgatcg
     4921 tactcccgtc tttcgcgcct gctcgggcat caattccgcg aaaagaaacc gatcctgctc
     4981 tacgcatcgc gccaggattt cggtcagagc aacatcaacg gtgacctggg cgagggcgtg
     5041 ggcggcgtga cggagccgat gcgccagaga atcgagcttc cgttcacggg tgactacgac
     5101 agcttcgagc acgtgctgac gcacgagatg gtgcaccagt tccagttcga cgtgttctcg
     5161 gaaggcaagg cgggcgccaa catccagacg ctcgagcagg tgaatcctcc cggctggttc
     5221 atggaaggaa tggccgagta tctgtcgctc ggtccgaacc atccgctgac gacgatgtgg
     5281 atccggaatg cggtcgagaa cggcagcatg ccgacgatca agcagatgac ggacgacccg
     5341 gacgattact tcccgtatcg ctatggcgag gcgctgtggc gctacatcgg tgagcgctgg
     5401 ggcgacggag cgatcggcga gatcctccag agcgtgacga cgatgggaat cgaccgaggc
     5461 ttcgaacacg agctcggcat cacgctcccg cagttgagcg accagtggcg cgcggcgacg
     5521 cgtgaggagt atctcccgca gcttgcatcg atgcagcgtg tacgcgattt cgcgactccg
     5581 ctactcacgc ccaagatcac cggtggctcc atcttcattg cgccggtcct gtcaccggac
     5641 ggcaagacca tcgcgtttct gtccaacggc agcgtcaaga agggtgagat cttcatcgat
     5701 ctgtacctcg gcgatgcagc cacgggcaag cgaatcaagc gactggtgag gacgacgaca
     5761 aatcctcgat tcgaggagct gcgattgctg tactcgcagg gatccttctc gccggacagc
     5821 aagaagtttg cgttcaccgc gcaaacagaa ggacgcgacg tactgtcgat cgccgacgtc
     5881 gcgacgggtg acgtggtgca gtatgacaag cttccgctgg atggagtgct gagtccgtcg
     5941 tactcgcccg atggcaagca catcgtgttc agtggcttcg ccgacggaat cacggatctc
     6001 tacgtcgtcg atgtcgacgg caagaatctg cgccgtctca cgagcgatcg ttacgcggac
     6061 gagatgccgt cgtggtcgcc cgacggtaca cacatcgcgt tcgcgacgga tcgcgcgagc
     6121 accgatctgc cgacgctcaa gctgggcaag atgcagatcg ccgtttacga tcttcagagc
     6181 ggcacgagtg aggtgcttcc ggggcagaag ggactcagca tcaatcccgt gtggtcgccg
     6241 gatggcaagt cgatcgcgta cgtatcggac cgcaacggta cgccgaacat ctatctgcac
     6301 aatctctcat cgaacgagga tctccgcgtc acgaacgtgc agtcgggtgt gagccagttc
     6361 accgagacga gtccggtgat gagctggtcg cgcgcgacag accgtcttgc cttcacctac
     6421 ttcgatcgca acgacttcac cgtctggtac atcgatcatc cgcagcaata cgcgaccgcg
     6481 attccggcgc aggccgccgc cactgtcgcg tcgggtgcag gtcccaccgc tcccgttcgc
     6541 gactcgacac ccggccgcgc gagcaatgcg atctccacat acaggtccgc aaatggctcg
     6601 cggcagtcga gcacactgtc ggaggccgag aagtctgaca gtacaaacgt ctcgagcgtg
     6661 gcgacggtgc tggcagatcc agtgactggc atgccggaca cacttacgtt caaggattat
     6721 ccgtaccacg tgagcttcca gcccgattac atctcgggtg gtacggtcgg cgtgtcgacc
     6781 ggcagtggat acggcacgca gtatggcggc ggaacgacgc tcgtcttcag cgatctcaca
     6841 ggcgatcatc agcttgccgt gggcggcggg gtgtatggac ggatacagga cgcaagcctg
     6901 ctgttcgcat acgccaacat gagtcacagg tggcagtaca tcacgggctt gtcgcaggat
     6961 gtcgcgtatc tcaatactgc ggcgcaagcc tcacccgacg gcacgcagta tcaattccag
     7021 ttcctgcggt acgtgatgcg aagcgcgtcg atcacggctg cgtacccgct caatcgattc
     7081 cagcggttcg agcttggact cggcgcaagc gcgatcgggc gtggtttcgt cacacaaacg
     7141 tatgacaact tcgggaactt ctcccagagc aatgggcagt cgctcgggac gttgtctttc
     7201 ctgtcgccga atgcagcgta tgtaaccgac aactctctgt tcggtgttac gggacccata
     7261 agcggtcgcc gtatgcgttt cgcagtttcg cctgcgatcg gcaatctcaa gttcatcaac
     7321 tatacggctg actatcggcg ctacgatccg gtcgtattca acgcattgac gttcgcgacg
     7381 cgactctttt tcaacgcctc gtacggccgc gatgcattcc agcttccgat ctacgttgga
     7441 agccctgact tcgtgcgcgg gtacgaccag tcgagcttct acggcggtta ttcctgctcg
     7501 tcgttcctca acactggcag cgtgtatgca aacggctgct ctgctccgca actgatcggc
     7561 acgcgcgcgg tggtattcaa cgaggagctg cgcttcccca tcatccggcg tttcgatctc
     7621 ggtgcgcttc caatcggaat tccgccagtt gacggagcgc tgttttacga cgctggactt
     7681 gcatggaacg ccggtcaggc gattcacttc gcgcggccgc gcaacttcaa tccgaacctg
     7741 gatatcgaca gatatttcct gcggagctac ggcggaacga tccgcgtgaa tctgttcaac
     7801 ctcgcgatac tgaactggtc ctactcacgc ccgctggacc gccccggttc caatggggcg
     7861 tggaactgga ccttcgcttt aggcgtcgct tattgagagg cagggggcgg atgcgtccgc
     7921 cccctgcctg caccaccatc ccggcacgtt ttactgcagc tgaaaccgtc ccggagacgc
     7981 gttgcatcgg ttaaattccc gcggtgcaca gacggctctc tatctccttg ttgcttctcg
     8041 ccgcgattgc gtgcggccga gggcgcaaag cgaatacgga caccgtagga aatgcggcca
     8101 gcgctgaggc cgcccgcggt cccgatccaa ttctcatccg gctgccccgc aagggcggca
     8161 ctgttcgagc ctacctctat ccgcggctcg attccgtcgt ctggacgggc cataccacgt
     8221 cagtcgatcg cgtgctgggc ttcgatccgg agggtggcgc gctcgcgatt atcgacgcca
     8281 agggccagcc cgcgcgggtt gacctccggc tgggtgagtc cgcaatcgcg acgaagacgc
     8341 agctgacttc gctgacgtcc cccacaggga ctgacatata cggagtcgac gacaagggaa
     8401 ctgtcgttcg actcacccgc tccgccgact ggaaattcac accgccgtat ccggcgcgcg
     8461 ctgtctttcc gcaggccgac ggcagtctcg taatcgacgc gcaacacgga gccgacgcgg
     8521 ttctctggct catgcatccg ccggatacga gcctccggga cacggtaacg ctccccatca
     8581 ccatgcgtgc cgttcacgcg caggtgggcg accgggtcta cgtcgcgacg gacacggccc
     8641 tggtgggagt tcgcgggcgt gatctgagcg aagtgccgcc aattcgcgtg cacggacaca
     8701 tagtcgcggt cgcaccgacg ccgagcggag acaggatcta cgtagcgaca accggcgact
     8761 ccgcgctcgc tgtggtggac agatacaccg acaaggtcgc ctcgacgatc cggcttcccg
     8821 gcgagatctc ggatcttcgc atggacggac tggggcgcta tgtaatcgca cgacccatcc
     8881 gcggcgactc ggcatgggta atcgcagtcg cgacgaacca cgtgatcgga tcggtccgca
     8941 ccaagtggac cgaagatctt ccggcaaccg
//
LOCUS       DATIMD010000499         2970 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3668249, whole genome shotgun sequence.
ACCESSION   DATIMD010000499 DATIMD010000000
VERSION     DATIMD010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2970
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3668249"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1695
                     /locus_tag="VLI40_11120"
     CDS             <1..1695
                     /locus_tag="VLI40_11120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97773.1"
                     /translation="YADPHTLFLASNVLFRTRNGGQSWDVISPDLTREDPGVPATFGE
                     FVNADPAHGHHRGVIYSIAPSHRDANVIWVGTDDGLIHVTRDGGKTWSNVTPSSITPW
                     SKIAQLDASHFDDQTVYAAVNRFRLDDLHPHIYRTHDGGKTWKEIDTGLPDDAAVNVV
                     REDPVRKGLLYAGTETTVYVSFDDGDHWQSLRQNLPATSIRDLVVKDSDLVVATHGRS
                     FWILDDVTPLRQLTAQTAHETAHLFAPEATFRVHRDTYTDTPLPPEEPVGQNPPDGAI
                     IDYFLGNTPKNPVTLEILDANGKVVHRYASDDRPEVTEKEIDALNVPAYWIRRPRILS
                     AAPGIHRWIWNLHYSDPSVLMHQYPISAIYMDTPRLPLGPAALPGTYTVRLTVDGKSY
                     TQPLVVKMDPRVHTSAADLQQQFALATHIASMIERDFDAVVEGRALLNQLEEAKTRTP
                     NAPATVRAAIDTLHAHVEALPITRLNNTLGGLLETIDGVDARPTTQGTAAVASLQQQL
                     DAAIVGWNRVRGPELDALNVKLKAAGIPAVAIPSDLTPYRHSLQQGETADKDDNDP"
     gene            1820..2185
                     /locus_tag="VLI40_11125"
     CDS             1820..2185
                     /locus_tag="VLI40_11125"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HSU97774.1"
                     /translation="MYFPPRELEVMSILWRLGSANVAEVRAELKDSLAYNSVLSALRT
                     LEEKNCVRHEPEGRAHRYFPTIDARRAGKSALARIRESIFEGSAERMFAQLVSDRRIS
                     NAELERMQRLIAERLEREP"
     gene            2182..>2970
                     /locus_tag="VLI40_11130"
     CDS             2182..>2970
                     /locus_tag="VLI40_11130"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HSU97775.1"
                     /translation="MTAAIIVYILIVTLPLIAAAALTERALRLWKWPVRGAWAAAAIA
                     IALIGGRTAVQQLSPSQAPLTITSTGNATAIHHTDAGVMADVARLAGNVTSFPRSAAA
                     YAAHAVGPTQSRVLMVLWCVASAVMLIFVCIVYARVWYAARRWKVTEFAGLTVRVAPH
                     AGPAVIGLFRPEVVVPHWMLEYGTDDSSLVVMHETEHQRARDPLLLAAMWSLVALFPW
                     HPGAWYCLARTRLAIELDCDARVVRRGASLGTYAALLLNQARARL"
BASE COUNT          594 a          983 c          858 g          535 t
ORIGIN      
        1 tacgccgacc cgcacacact gtttctcgcc agcaacgttc tcttcagaac gcgcaacggc
       61 ggtcagagct gggatgtcat aagccccgac ctcacacgtg aagatcctgg cgttcccgca
      121 acattcggcg aattcgtcaa cgccgatcct gcgcacggtc atcatcgcgg tgtcatctac
      181 agcatcgctc cttcgcaccg cgacgcgaac gtcatctggg tcggcaccga cgacggcctg
      241 attcatgtaa cgcgcgacgg cggaaagacg tggagcaacg tgacgccgtc cagcatcaca
      301 ccgtggagca agatcgcgca gctcgatgcg tcgcatttcg atgaccagac cgtgtacgca
      361 gcggtgaatc gtttccggct cgatgacctc catcctcaca tctaccgcac tcacgacggc
      421 ggaaagacgt ggaaggagat cgataccggc cttcccgatg atgcggccgt caacgtcgta
      481 cgcgaagatc ccgttcgcaa gggactgctg tacgccggaa ccgagaccac tgtatatgtg
      541 tcgttcgacg acggcgatca ctggcagtcg ctgcgccaga atcttcccgc cacatccatc
      601 cgcgatctcg tcgtcaagga tagcgatctc gtcgtggcaa cccacggccg ctcgttctgg
      661 atcctcgatg acgtaacccc gctccgccag ctcaccgcgc agaccgcgca cgagactgct
      721 cacctgttcg caccggaagc aacgttccgc gttcatcgcg acacgtacac cgatacgcca
      781 ctgccacccg aagagcccgt cggtcagaat ccgcccgatg gcgcgatcat cgattacttc
      841 ctcggcaata caccgaaaaa tcccgtcacg ctggagattc tcgacgcaaa tggcaaggtc
      901 gtacatcgct acgccagcga cgaccgaccc gaagtcaccg agaaggagat cgatgcgttg
      961 aacgtaccgg catactggat ccgccgtccg cgtattctct ccgccgcacc cgggattcac
     1021 cgctggatat ggaacctgca ctactccgac ccaagcgtgc tcatgcacca gtatccgatc
     1081 tcggcgatct acatggacac gccgcgactg ccgctcggtc cggccgcgct tcccggtacc
     1141 tatacagtcc ggctcaccgt ggacggaaag agctacacgc agccgctcgt cgtgaagatg
     1201 gatccgcgcg tgcacacgtc ggccgccgac ctgcagcagc aattcgcgct tgccacacac
     1261 attgcatcga tgatcgagcg cgacttcgac gcagtggtgg aagggcgtgc gttgttgaac
     1321 cagctggaag aagcgaaaac gcgcactccc aacgcaccgg cgaccgtgcg tgcagcaatc
     1381 gacacgctgc acgcacatgt cgaagctctc ccgatcacgc gtctcaacaa tacacttggt
     1441 ggattgctcg aaaccataga tggtgtcgat gcgcgcccaa cgacgcaggg cacagctgcc
     1501 gtcgcctcgt tgcagcagca gctcgacgcc gcaatcgttg gctggaaccg agtcagggga
     1561 ccggagctcg atgccctgaa cgtgaagctc aaggcggccg gaattcctgc cgttgcgatt
     1621 ccttcggacc tcacacccta tcgacattca ctccagcagg gagagaccgc cgacaaggat
     1681 gacaacgacc cctgaccggc tgtcgctcga tcctccagaa agggtagaat cggctaactc
     1741 ctgaaaaacc agttgacaac cgcggggaaa ggacgtaatc tcctgaaaag tcaggagttc
     1801 accctttccc cgagtggtta tgtactttcc gccgcgtgaa ctggaagtaa tgagcatcct
     1861 ctggcgcctt ggctccgcga acgttgcgga agtccgcgcc gaactcaagg actcgctcgc
     1921 gtacaactcg gtgctctccg cactgcggac gctggaggag aagaactgcg tgcgacatga
     1981 gccggaaggt cgcgcccaca gatacttccc caccatcgac gcgcgacgcg caggcaagag
     2041 cgcgctcgcg cgaatccggg aatcgatatt cgaaggctcc gccgagcgca tgttcgcgca
     2101 gcttgtatcc gaccggcgca tcagtaacgc agagctcgag cgcatgcagc gtctcatagc
     2161 ggagcgactg gagcgcgagc cgtgaccgcc gcgatcatcg tctacatcct gatcgtaacg
     2221 ctgccgttga ttgccgccgc tgcgttgacg gagagggcgc tccggctctg gaagtggccg
     2281 gttcgtggag catgggccgc ggccgcaatc gcgatcgcgc tcatcggcgg acgcactgcc
     2341 gtgcagcaac tatcgccgtc gcaggcacct ctgacgatca catcgacggg caacgcaacg
     2401 gcgattcacc acactgacgc cggcgtcatg gccgacgtcg cgcgccttgc cggcaatgtg
     2461 acatccttcc cgcgctccgc cgccgcatac gcagcgcacg ctgtcggacc gacgcagagt
     2521 cgcgtgctca tggtactgtg gtgtgttgcg agcgccgtca tgctgatctt cgtctgcatc
     2581 gtctacgctc gcgtctggta tgccgcgcgg cgttggaagg tgaccgagtt tgcgggcctg
     2641 accgtacgcg tcgctccgca cgccggtccg gccgtcatcg gtctcttccg tccggaggtt
     2701 gtggtacctc actggatgct cgagtatgga accgacgaca gcagtcttgt cgtgatgcac
     2761 gaaacggagc accagcgagc gcgcgacccg ctgctgctcg cagcgatgtg gtcgctcgtc
     2821 gcattgtttc cgtggcatcc cggcgcatgg tactgtctcg ctcgcacccg cctcgcgatc
     2881 gagctggact gtgatgcacg cgtcgtacgg cgcggtgcgt cactcggaac atacgctgcg
     2941 ttgttgttga atcaggcgag agcgcgactc
//
LOCUS       DATIMD010000500         2910 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5405086, whole genome shotgun sequence.
ACCESSION   DATIMD010000500 DATIMD010000000
VERSION     DATIMD010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5405086"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(332..1297)
                     /locus_tag="VLI40_11135"
     CDS             complement(332..1297)
                     /locus_tag="VLI40_11135"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSU97776.1"
                     /translation="MIGGLDVSRIGLGAMSMAGYYNIGAGSDAESIRTIHRALDLGVT
                     HIDTAEIYGPYTNEELVGRAIKDRREQVVLATKFGLVSHAAAGAGVLDSSPANIRVAV
                     EGSLRRLGTDRIDLYYQHRVDPKTPIEETVGALAELIAEGKVRYIGLSEAGPATIRRA
                     HAVHPIAALQTEYSLWTRDPERELLPLLRELRIGFVPYSPLGHGFLTGEIRSPDQLSD
                     DDWRKNNPRFTGENFMRNLQIVDEVKAVAAQAGATAAQVALAWLLAQGDDIAPIPGTK
                     RVARVEENIAADDIELSSEQLDRLSNLMPAVGERHTEASMAIVDR"
     gene            1539..2543
                     /locus_tag="VLI40_11140"
     CDS             1539..2543
                     /locus_tag="VLI40_11140"
                     /inference="COORDINATES: protein motif:HMM:NF018431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSU97777.1"
                     /translation="MANRSSTRRKRGTPKVNRGRSGSAQREKKVGLGAAKSLELANLL
                     QRQTTTEGRNETPIPQLKLYRYSQPTESANVFMEPGVYVVAQGRKRVTVGDETYIYDP
                     SQYLAVSVDLPAAGNVFEASPEEPYLCMTLTVDPRHLAALIVETGRHTPRDDHNGRAV
                     YVSALRPSLLDGFLRLVRLLDAPQDIPVLAPLILRELNYRLLEGEQFGRLAQMAIGDG
                     RLRRVSGAIAWIKEHFREPLEIGTLAKQVNMSPSALHHSFKAVAAMSPVQYQKRMRLH
                     EARRLLLYDSTSAEAVAYEVGYASASQFNREYVRLFGQPPRRDADRLRAEASDESRNP
                     "
     gene            complement(2773..2845)
                     /locus_tag="VLI40_11145"
     tRNA            complement(2773..2845)
                     /locus_tag="VLI40_11145"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2810..2812),aa:Gly,seq:ccc)
BASE COUNT          539 a          887 c          918 g          566 t
ORIGIN      
        1 tggggatcgt tgccttggcc gcgtgtttcg ttcccgcgag acgcgccact cgcgtttctc
       61 ctatgcaggc gctcaagtag cgaagtgaga tatcaaacag gataggatcc gagttacggc
      121 gcatgaggta caacggtccc cggtggtcga aacagcttgt aaccgttgtg aggaccgttg
      181 cgacacgaaa atcggccgcc gaggccggcg gccgattttc acaggtcgtg tttcacaacg
      241 agattcagag cgggcgaccg gactcgaacc ggcgacgtcc agcttgggaa gctgcacgac
      301 gctaaggggg tcgttgcgta agtcggtgtc attatcggtc gacgattgcc atgctggctt
      361 cggtgtgccg ttcgccgaca gccggcatga gattgctgag ccggtcgagt tgttcggagc
      421 tgagttcgat gtcgtcagct gcaatgttct cctcgacgcg ggcgaccctc ttcgtcccgg
      481 gaatcggggc gatatcgtcg ccctgtgcga gcagccatgc caatgccacc tgtgccgccg
      541 tcgcacccgc ctgcgcggca accgccttta cctcgtcaac gatttgcagg ttgcgcatga
      601 agttttctcc ggtgaagcgc gggttgttct tacgccagtc gtcatcggag agttggtcgg
      661 gcgagcggat ctcgccggtg aggaagccgt ggccgagcgg cgagtacgga acgaagccga
      721 ttcgcaactc gcgcagcagc ggtaacagtt ccctctcggg gtcacgcgtc cacagcgaat
      781 actccgtttg gagcgcagca atcggatgca ccgcgtgtgc gcggcggatc gtggccggcc
      841 cagcctccga caggccgatg tagcggacct tgccttcggc gatcagttcg gccagggcgc
      901 cgacggtttc ctcgattgga gtcttcggat cgacgcgatg ctggtagtac agatcgatgc
      961 ggtccgtgcc gaggcgcctt agcgaaccct cgaccgcaac gcgaatattc gccgggctgc
     1021 tgtcgagaac gcccgcacca gcagccgcat gcgagaccaa tccgaacttc gtcgcgagca
     1081 caacctgctc tcgtcgatct ttgatggcgc ggccaacgag ctcctcgttg gtgtatgggc
     1141 cgtagatttc ggcggtgtcg atgtgcgtga cgccgaggtc cagcgcccga tggatggtgc
     1201 ggatggactc cgcgtcgctg cctgcgccga tgttgtaata gcccgccatc gacatcgcac
     1261 cgagccctat ccgggaaacg tcgagtcctc cgatcaaaat gtgtttcatg gcgctgttcc
     1321 tccgttgcta tttgacttgc acttcctgtg attgatccga ttgtttgaga gtggcttgcg
     1381 ggccgcagcg gtcgctcagg actgttcgcg gtagcctccg cttccgtgca tggatggtaa
     1441 tgttctgctc cggtcgagtc tccgccggat cgtgtctggt tattgcctat tcctgcacag
     1501 cgctggaaga attgcccaca cggcggtatc gtgcgagcat ggcgaacaga tcctccactc
     1561 gtcggaagcg cggtacgccg aaggtcaatc gcggccgatc cggttccgcg caacgcgaaa
     1621 agaaggtggg gctcggcgca gccaagagct tggagctcgc gaatctgctc caacgccaga
     1681 ccaccactga ggggcggaac gagacgccga tcccgcagtt gaagctctat cgatattcac
     1741 agccgaccga atcggcgaac gtcttcatgg agccgggagt gtacgtcgtc gcgcaggggc
     1801 gaaaacgagt gacggtgggt gatgagacct acatctacga tccgtcacag tacctcgccg
     1861 tttcggtgga tcttccggct gcggggaatg tcttcgaggc gagtcccgag gagccgtacc
     1921 tctgcatgac gctcaccgta gacccgcgac atctcgcggc attgatcgta gaaaccggac
     1981 gccacacacc gcgcgacgac cacaacggac gagccgttta tgtgagtgcc ctgcgccctt
     2041 cgctgctcga cggctttctc cgattggtac gtctcctcga cgcaccgcaa gacattcccg
     2101 tgctcgcgcc gctcatcctg cgggaactca actaccggct gctcgagggt gagcaatttg
     2161 ggcgtctcgc gcagatggcg atcggtgatg gccgactgcg ccgagtctcg ggagcgatcg
     2221 cctggatcaa agagcacttc cgcgaaccgc tcgagatcgg gacgctcgcg aagcaggtca
     2281 acatgagtcc ctcggccctg catcactcct tcaaggctgt cgcggcaatg agtccggttc
     2341 agtaccagaa gcgaatgcga ctgcacgaag ctcgtcgcct ccttctctat gacagcacga
     2401 gcgcagaggc cgtggcctac gaagttgggt acgcgagcgc gtcgcagttc aaccgcgaat
     2461 acgttcggct atttggccag ccgccgcgac gagacgccga tcgcttgcgc gcggaagcgt
     2521 ctgatgaaag tcggaacccc tgatccgcgc cggtccgcag tctccgcgga ttatctgcgc
     2581 aacgcacggc ggcgcactca agcatcgcga ccttgccgtt catccggagc gcgaaaggcg
     2641 gcgggtgcgt gacggcgacc gtggacatcc agctagagtt tggcgactcg tggggaccgt
     2701 tgagacacga aaaaacggct gccgatctcg gccgccgttt ttcgtaaact gccacgcgat
     2761 aggctcttcc agagcgggcg accggactcg aaccggcgac gtccagcttg ggaagctggc
     2821 attctaccaa ctgaattacg cccgcagacg aggcgcgaaa cgccccgtcg ccagcgcacg
     2881 atccggctgc gcgatggcga cggagaagat
//
LOCUS       DATIMD010000501         7163 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4244697, whole genome shotgun sequence.
ACCESSION   DATIMD010000501 DATIMD010000000
VERSION     DATIMD010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7163
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4244697"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1983
                     /locus_tag="VLI40_11150"
     CDS             <1..1983
                     /locus_tag="VLI40_11150"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HSU97778.1"
                     /translation="DFQPAIDEGMRQDLADIAKIADQSAPPTFDNTIVALERSGQLLA
                     RVQRVFGGLTQSNTNPTLQRVRREEAPRLAAHSDAINLNPRLFARIRTIYEHRKTSGL
                     DAEQQYLVERYYIRFVRAGANLSEADKVRLRALNQEESKLRNEFSSKLLAATKAGALV
                     FDDTAKLAGLSPADIAAAAQAADERGLAGKWVLPLQNTTQQPAQASLTNRTVREQLFN
                     ASIMRAEHGDSNDTRATIARIAQIRAERAKLLGYPDYAAYVLDNQMAKTPAAALKLLT
                     DLVPAATAKARGEAADMQKLIDQQNGGFKLAPWDWQYYAEQVRKKSYDLDETQLKPYF
                     ELNRVLKDGVFFAANKLYGITFTERKDIPVYQPDVRVFEVRDANGKPLALFYYDPFKR
                     DNKAGGAWTSSFVSQSGLLGAKPVVYNVENFTKPAPGQPALLTFGDVTTMFHEFGHAL
                     HGMFSNVEYPTLAGTSVPRDFVEFPSQFNEHWALEPTVFANYARHYQTGAPMPQALVQ
                     KIRRASTFNQGFATTEYLAASLLDLAWHTLPPDAPLQNVDSFETASLKRFKVDMPEVP
                     PRYRSTYFSHIWDNGYAAGYYAYLWSEVLDDDAYAWFTEHGGMTRANGQRFRDMILSR
                     GNTEDVGAMYRAFRGRDPRIEPLLQQRGLSEEKPAG"
     gene            2129..2482
                     /locus_tag="VLI40_11155"
     CDS             2129..2482
                     /locus_tag="VLI40_11155"
                     /inference="COORDINATES: protein motif:HMM:NF015378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HSU97779.1"
                     /translation="MKLASIAAAAATVVAVPLFAQGTTPKTDVPPALARQAKISLDSA
                     RAIATKRLPNASIQSQELEQEKGRLIYSFDMKTTGKSGVEEVNVNAKTGAIVGVMHET
                     AKDEQNEAKSEKKKP"
     gene            2652..3185
                     /locus_tag="VLI40_11160"
     CDS             2652..3185
                     /locus_tag="VLI40_11160"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSU97780.1"
                     /translation="MFARPAMVLAFLVAPPLFAQAPASSTRSPDSEVHDQWSTVSKYL
                     TRAAVAVPESSYTYKPVATVRTFGQLVAHVAGSQMMFCAAALGEKVPAEDDFEKRTMS
                     KDELVKALDASNTYCARAYAVPSSRLGGPVEMFGEHFTQGGLLLMNATHDNEHYGNVV
                     TYMRMMGLVPPSSQPAQ"
     gene            complement(3238..3807)
                     /locus_tag="VLI40_11165"
     CDS             complement(3238..3807)
                     /locus_tag="VLI40_11165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97781.1"
                     /translation="MTASPDEQILLGRSLVLNHDCSGCHGGASPESKEWLAGMMHPEQ
                     EFLIGPCALKLDAKPCWRTRPRNLTPDNATGLGRFSERQIFNALRYGLRPEDTPDVDI
                     TSGTPGAGNFPRHPHYLAPPMPWPAWRYMSDRELQAIAAYLKRAVKPVTNKVPESEGP
                     PDFWASVYTVDLIGPYPAPSFPGANERVP"
     gene            complement(3950..5419)
                     /locus_tag="VLI40_11170"
     CDS             complement(3950..5419)
                     /locus_tag="VLI40_11170"
                     /inference="COORDINATES: protein motif:HMM:NF019352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase family protein"
                     /protein_id="HSU97782.1"
                     /translation="MGTPVGRIANLRSVTRSLIAASFVMPILPPALRHAQPVVAQQVG
                     SKPVADTLRNPPVLRNVSSRPHTVEVNIVAAPARISVLPGRLTDVYAYNGSIPGPTLE
                     AREGDRVIIHFRNDLPEATTVHWHGVHLPANMDGSPFDPVPPGGHYDYIFTIPRGTAG
                     TYWYHPHPDGRSEYQAAMGLFGAFIVRAADDPIAKLPEKVIILSDNRFRPDGSIEFAD
                     SNSTQSDIDMENGREGNVLFVNGQIRPSIPIHNGEVQRWRVINASAARVYRLAIPGKT
                     LLQVGSDDGLFEHAVETKEILVANSERVELLVRGTASPGSSAELTDLPYDRYMPQTRP
                     ADWDTSHVLLDLHYSDQTMPTPVTLPATFRVVPALDTAMATVTRTVVLSQGMINGQTM
                     DMSRVDMHASVGATEIWDVENVVGMDHPFHLHGFQFQVLDRNGVPEPFRSWKDVVNIP
                     KHEAVRFIVRYADFPGKWMFHCHILAHEDHGMMAVLEVR"
     gene            5646..6035
                     /locus_tag="VLI40_11175"
     CDS             5646..6035
                     /locus_tag="VLI40_11175"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019239 - deaminase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rid family detoxifying hydrolase"
                     /protein_id="HSU97783.1"
                     /translation="MPDHFPITPTGSVKPLGPYSPAMGFERLVFVSGQGAVDPATNRL
                     VGADVETQTEQCLRNVQTILEAAGSSLQHVLRCGVFLIDMNEFSQMNAVYGRVFGDHR
                     PARTTVQAAALPGDGLRVEIDCIAYTK"
     gene            6035..>7163
                     /locus_tag="VLI40_11180"
     CDS             6035..>7163
                     /locus_tag="VLI40_11180"
                     /inference="COORDINATES: protein motif:HMM:NF026035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97784.1"
                     /translation="MFPLTAVLLVLQTVASTASPTNGVQDAAYGPHGRLALAIDGDIW
                     VQRAAGDTTHWIQITSGAAWDREPAWSADGNSLVFTSNRDGSSRLYKVQLGAAGNAAA
                     GQPTTSPQRVTDSNAWESNPALAVDGTLAFVRGSGPTARIYLRSPDGHERRLTKSKTG
                     AEGWPAFAPDGKQLAFVAITERGRRLRVALMHGDSTYTVVSNRDVEHPAWSPDGRRLA
                     FGTRSGPAGVWITTPENDYVNLVSARRAAPSWSPNGSTLVLVELPPPSPGYNGDPDRL
                     GERGAGSLQKGSGELWYVSAPPAPDSGNTANVAIAVDQRDRNAAQFDATWQRTAQLYY
                     STPDAASRHAQWETLRNTFRPRALAAKSDDDLANVVHEMLLR"
BASE COUNT         1475 a         2195 c         2192 g         1301 t
ORIGIN      
        1 gattttcagc ctgcgatcga tgaagggatg cggcaggatc tcgcggacat tgcgaagatc
       61 gccgatcaga gcgcgccacc gacgttcgac aataccattg ttgctctcga gcgatccggc
      121 cagctgctcg ctcgtgtgca gcgggtgttc ggaggcctca cgcaatccaa cacaaatccg
      181 acgctgcagc gcgtgcggcg cgaggaagcg cccaggctcg cggcgcacag cgatgcgatc
      241 aatctcaatc ccagactctt cgcacgcatc aggacgatct acgaacaccg caagaccagc
      301 ggtcttgacg ccgagcagca atatctcgtc gaacggtact acataaggtt cgtacgcgcg
      361 ggcgcaaatc tgtcggaagc ggacaaggtc aggctccgcg cgctcaatca ggaagaatcg
      421 aagctgcgca acgaattctc gagcaagttg ctcgcggcga ccaaggcggg cgctctggtg
      481 ttcgatgaca ccgcaaagct tgcgggtctc agtcccgcag atatcgcagc tgcagcgcag
      541 gcggcggacg agcgaggact ggctggaaag tgggtccttc cgttgcagaa caccacgcag
      601 cagcccgcac aggcttcgct caccaaccgc accgtgcgcg agcaactgtt caacgcgtcg
      661 atcatgcgcg ccgagcacgg cgattccaac gatacgcgcg cgaccattgc gcgcatcgcg
      721 cagattcgcg cggagcgtgc gaaactgctt ggctatcccg actatgccgc gtacgtgctc
      781 gacaatcaga tggcgaagac tcccgccgcg gcgctcaagc tgttgaccga tctcgtgcca
      841 gcggccacgg ccaaggcgcg cggcgaggcc gccgacatgc agaagctgat cgatcagcag
      901 aacggcggat tcaagctcgc gccgtgggac tggcagtact acgccgagca ggtgcgcaag
      961 aaatcgtacg acctggatga gacgcagctc aagccttact tcgagctgaa tcgcgttctg
     1021 aaggatggcg tgttcttcgc ggcgaacaag ctgtacggga taacgttcac cgagcggaag
     1081 gacatccctg tctatcaacc ggacgtgcga gtcttcgaag ttcgtgacgc caacggcaag
     1141 ccgctggcac tcttctatta cgatccattc aagcgcgaca acaaggccgg cggcgcctgg
     1201 acgtccagct tcgtctccca gtcaggcctg ctcggcgcaa agcctgtcgt gtacaacgtg
     1261 gagaacttca ccaagcccgc gccaggtcag cccgcgctgc tgacgttcgg cgatgtgacg
     1321 acgatgttcc acgagttcgg ccacgcgctg catggcatgt tctcgaacgt ggagtatccg
     1381 acacttgccg gcacgagcgt gccgcgcgac ttcgtggaat ttccgtcgca gttcaacgag
     1441 cactgggcgc tcgagccgac cgtattcgcg aactacgcca ggcattatca gaccggcgcg
     1501 ccgatgccgc aggcgctggt gcagaagatc cggcgcgcga gcactttcaa tcagggcttt
     1561 gccactactg aatatctcgc cgcttcgctg ctcgatcttg catggcacac gctgccaccg
     1621 gatgcaccgc tccagaacgt cgactcgttc gagacagcat cgctcaagcg cttcaaggtc
     1681 gacatgcccg aagttccgcc gcgctaccgc tcgacgtact tctcgcacat ctgggacaat
     1741 ggctacgccg cgggatacta cgcgtacctg tggagcgagg tgctggacga cgatgcgtat
     1801 gcatggttca ccgagcacgg cggcatgacg cgcgcgaacg gacagcgctt tcgcgacatg
     1861 atactgtcgc gcggaaatac cgaggacgtg ggggcgatgt atcgtgcatt ccgcgggagg
     1921 gatccccgga tcgagccact gctccagcaa cgtggactga gcgaggagaa acccgccgga
     1981 tgaggtgtcg gtagctcgct ctggcgaggg cccggccgag cgtccggcga tcggacgctc
     2041 gctgtaataa tcgtgacagg ttgcgtccat atcgttaatt gatcggcgtg caacacgcgc
     2101 cgtgctcaac catcatatgg agagggtcat gaaactcgca tcaatcgcgg ctgcagcagc
     2161 caccgtggtc gccgtaccct tgttcgcaca gggaacgacg ccaaagaccg atgttccacc
     2221 tgcactcgcc aggcaggcga agatctcact cgactccgcg cgcgcaatcg cgacgaagcg
     2281 tctgccgaat gcatcgattc aatcgcagga gctggaacag gagaaggggc gcctgatcta
     2341 ctcattcgac atgaagacaa cgggcaagag cggcgtcgaa gaagtgaacg tcaacgcgaa
     2401 gaccggcgcg atagtcggag tcatgcacga gactgcgaag gacgagcaga acgaagcgaa
     2461 gagcgagaag aagaaaccat aacggcgaat gcggttcttg ccacggaatc gggctcctct
     2521 cgcgacgcgg cgttagtgga agatcgtgga agatcgaggg agcaggatcc gtccatcctg
     2581 ctccttgcgc ccgatccgaa cgagcgcgac attcgagtgt cgtcagttca ccctcacttc
     2641 ggagcttcgc catgttcgct cgccctgcga tggtgttggc gttccttgtt gcgccgccat
     2701 tgttcgccca ggctcctgct tcatcgacac gctcccctga ctctgaagta cacgaccagt
     2761 ggagcactgt cagcaagtac ctgactcgcg cagcggtcgc ggtacccgaa tcgtcgtaca
     2821 cgtacaagcc ggtagctact gtccgaacct tcggtcagct cgtagcacac gtcgcaggat
     2881 cacagatgat gttctgcgcc gcggcactcg gtgaaaaggt gccagccgag gatgacttcg
     2941 agaagcggac catgtccaag gacgagcttg tcaaggcact cgatgcgtcg aatacgtact
     3001 gtgctcgcgc gtatgcggtg ccatcgtccc gattgggagg tccggtggaa atgttcggag
     3061 agcatttcac gcagggcgga ctgctgctga tgaatgcgac gcatgacaac gagcactacg
     3121 gcaacgtcgt gacttacatg cgcatgatgg ggctcgtgcc gccgtcgagt cagccggcgc
     3181 agtagcagga atcgggaggc aggtcttgct ccgagcaaga tctgcctccc cggtgtccta
     3241 gggaactcgt tcgttagcgc ccgggaacga cggtgccggg tagggaccaa tcaaatccac
     3301 cgtgtagaca ctcgcccaga agtcgggtgg tccttcgctc tccggtacct tgttggtaac
     3361 cggcttgacg gcgcgcttga gatatgcggc gatcgcctgc agctccctgt cggacatgta
     3421 gcgccaagct ggccatggca tcggtggagc gagatagtgc ggatgccgag gaaagttgcc
     3481 ggcgccgggt gtacccgaag tgatgtcgac gtcgggcgtg tcttccggac gaagaccgta
     3541 acgcaatgca ttgaatatct gacgctcgct gaatcttcca aggccagtgg cgttgtccgg
     3601 cgtgagattg cgaggacgcg tgcgccagca cggtttcgca tcgagcttca gtgcacaagg
     3661 tccgatcaga aactcctgct caggatgcat cattccggcg agccattcct ttgactccgg
     3721 actcgcgcct ccgtgacacc ccgagcaatc gtgattcaat accagggatc ttcccagtag
     3781 aatctgctcg tctggcgacg ctgtcacgcg gcttgacgcg aaggcgacac gactcgctgc
     3841 tgccggccgc tgctgtaccc atcccacaat tgcgacagca gatattaaag agctgaaagc
     3901 aagcagtcgc gtaaggaagg ttcgcgtcac tttggcctcc ttgcaggggt tatcgcactt
     3961 ccagaaccgc catcatgccg tgatcctcgt gcgcgaggat gtgacagtgg aacatccact
     4021 tcccaggaaa gtcggcgtag cgaacgatga atcgcacggc ttcgtgtttg gggatgttga
     4081 cgacgtcctt ccagctacgg aacggctccg gcacgccgtt ccggtccagc acctggaact
     4141 gaaatccgtg aagatgaaat gggtgatcca tacccaccac attctcgacg tcccatatct
     4201 cggtagcgcc aactgacgca tgcatgtcga cacgcgacat gtccatggtc tgtccgttga
     4261 tcattccctg gctcagcaca actgtacgcg taactgtagc catggccgta tcgagtgcgg
     4321 gaacgactcg aaatgttgca ggcagcgtga caggagtcgg catggtctga tcgctgtagt
     4381 gcaagtcgag cagaacgtgc gacgtatccc agtctgccgg cctggtctgc ggcatgtagc
     4441 gatcgtatgg cagatcggtg agctccgcgc tgctccccgg tgatgcagtt ccgcggacga
     4501 gcagctccac tcgctcggag ttggcaacca ggatctcctt cgtttccacg gcgtgctcga
     4561 acagaccatc atcgctcccc acctgcagca gcgtctttcc ggggatcgca agccggtaca
     4621 cgcgcgccgc tgatgcattg atcacccgcc agcgctgcac ttcgccgttg tggatcggaa
     4681 tggaaggcct gatctgaccg ttgacgaaca ggacgttgcc ttcccgtccg ttctccatgt
     4741 cgatatctga ttgagtggag ttggaatcgg caaactcgat cgatccatcg ggacggaaac
     4801 ggttatccga tagtatgatc accttttccg gaagcttcgc tatcgggtca tcagcagcgc
     4861 gaacgatgaa tgcgccgaac aatcccatcg cggcctggta ctcgcttcgt ccgtcgggat
     4921 gcgggtggta ccagtacgtt cccgcagtcc cgcgcgggat ggtgaagatg tagtcgtagt
     4981 gtccgcccgg tggcacggga tcgaacggac tgccatccat gttcgccggc agatgcacgc
     5041 cgtgccagtg cactgtcgtt gcttcgggaa gatcgttgcg aaaatggatg atgacgcgat
     5101 cgccttcgcg cgcttccagc gtcgggcctg gaatggatcc attatacgca tacacatcgg
     5161 tcagacggcc cggcaggaca gagattcgcg cgggcgctgc aacgatgttc acctcgaccg
     5221 tgtgtggcct ggacgacacg ttgcgcagca ccggcgggtt cctgagcgtg tctgcgaccg
     5281 gtttggagcc gacctgttga gccaccacgg gttgcgcatg ccgcaaagcc ggtggcagaa
     5341 tgggcatcac gaatgatgcc gctatcaggc tccgggtaac ggagcggagg ttcgcaatgc
     5401 gcccgacagg agtacccaac gatgcctcgt tgtgggtggg agagcgatgg gttgcgcggg
     5461 tgcgaacgac cttaccgtgg gcaccaagat acgggggtcg cgcgcaaccg caagacgcga
     5521 agtgcgtatg cccagatccc gcgcaggcgt tggaacgcga cgactaccgc ggcgcgagcc
     5581 gacacactag gctcatgtac caaaggctca tgtaccaaca gcactcccaa ccgacacatc
     5641 acaccatgcc tgaccatttt ccaatcacac ccacaggttc cgtcaaacca ctcggtccct
     5701 actctcccgc gatgggattc gagcgactgg tattcgtctc gggacagggt gcggtcgatc
     5761 ccgcaaccaa tcgcctggtg ggcgcggacg tcgagactca aacggagcag tgcctcagga
     5821 acgtgcagac catactcgag gcggccggct ccagcctgca gcatgtgctg cgctgcggcg
     5881 tatttctaat cgacatgaat gagttcagcc agatgaacgc cgtttacggc cgcgtgttcg
     5941 gcgaccaccg ccccgcgcgc acaacggtac aggcggcggc gctgccgggc gacggactca
     6001 gagtcgagat cgactgcatc gcgtacacga agtgatgttt ccgctcaccg ccgtgctgct
     6061 cgtcctccag acggtagcaa gtaccgcctc accaacaaat ggcgtacagg acgccgcata
     6121 cgggccgcac ggccggctcg cgctggctat cgacggcgac atctgggtgc agcgggctgc
     6181 aggtgatacc acgcactgga tacagatcac ctcaggagcg gcatgggacc gcgagccggc
     6241 gtggagcgcg gacggcaact cgctcgtatt cacatccaat cgcgacggca gctcccgact
     6301 ctacaaggtg cagctcggcg ccgcaggaaa cgcggccgca ggacagccca cgacttctcc
     6361 gcagcgtgtg accgattcca acgcatggga gagcaaccca gcgctcgcag tggacggcac
     6421 actggcgttt gtccgtggca gcgggccgac cgcgcgtatc tatcttcgct caccagacgg
     6481 gcacgagcga cgcctcacaa agtcgaagac tggcgccgag ggctggccag cgttcgcacc
     6541 ggacggcaag cagctcgcat tcgtagcgat cacggagaga ggacgaagac ttcgcgtcgc
     6601 cctgatgcac ggcgattcca cctacaccgt cgtgagcaat cgcgacgtcg agcatcctgc
     6661 atggtcgccc gatggacgca gactcgcatt cggcacgcgg agtggaccgg ctggcgtctg
     6721 gatcaccact ccggaaaatg attatgtgaa cctcgtcagc gcgcggcgcg ccgcaccgtc
     6781 gtggtctccc aatggaagca ctctcgtact cgtggagctt ccaccaccgt cgcccggcta
     6841 caacggcgat cccgaccgtc ttggcgagcg cggggctggg tcgctgcaga agggctcggg
     6901 ggaattgtgg tacgtgtctg cgccgcccgc acccgacagt ggaaacaccg caaacgttgc
     6961 aatcgcagta gatcagcgtg atcgcaacgc agcgcaattc gatgcgacgt ggcagcgcac
     7021 ggcgcaattg tactactcga ctccggatgc cgcatcacgt catgcgcagt gggaaacgct
     7081 ccgcaacact ttccgtccgc gcgcgctcgc ggcgaagtcc gacgatgatc tcgcgaacgt
     7141 cgtgcacgag atgttgttgc gtc
//
LOCUS       DATIMD010000502         4553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2512218, whole genome shotgun sequence.
ACCESSION   DATIMD010000502 DATIMD010000000
VERSION     DATIMD010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4553
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2512218"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(80..640)
                     /locus_tag="VLI40_11185"
     CDS             complement(80..640)
                     /locus_tag="VLI40_11185"
                     /inference="COORDINATES: protein motif:HMM:TIGR01656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HSU97785.1"
                     /translation="MAQAPTTVFLDRDGTIIRDVSYLSRPEDVELLPGAAHAIARLNH
                     ERIPVIVITNQSGIARGRFTVADYLLTQMRLDQLLNESGATIDATYYCPDHPDFTGPC
                     SCRKPGIALFERAVAEHTLNMSAPGYVGDRWRDVEPFHRLGGTPVLISGPNTPPEDVE
                     RARDENVAIVASLGDAVDILLGAAQS"
     gene            complement(675..1883)
                     /locus_tag="VLI40_11190"
     CDS             complement(675..1883)
                     /locus_tag="VLI40_11190"
                     /inference="COORDINATES: protein motif:HMM:NF024603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HSU97786.1"
                     /translation="MRIRRSSVFNGLAMLALFACASPGVPPGGPERHTPPAITRIQPD
                     TNSVGVRGKEFVIHFDEVISERPAGATTLADLVLISPQRGKPVVDWHRSSLSIRPPKG
                     WRANTAYTVTILPGLADLRGNVRTTPTVVTFSTGPSIPHTSIRGTIFDWLSGLPINSG
                     MIEVRPQTDTSIVYVTASDSIGHYRLVGLPPARYQVRGYADGNRNRGLDPGEAFDTTR
                     VDLADSLNLEILAFAHDSTGPKLGSVSVQDSVTLHANFDTPIDPRVPLTPAQFTLTAP
                     DSSHVAIVSVTAMHPDTAHAMPLPPPVPTQQSVIPVPQRRAPPAKIVLPKPTRPLLVR
                     DVIIVLAKPLQPGATYRLDALNATGPTGRKLSSDRTFTVPKTEKPAATKGTPTRPAAS
                     DTTRRVRPAR"
     gene            complement(1880..>4553)
                     /locus_tag="VLI40_11195"
     CDS             complement(1880..>4553)
                     /locus_tag="VLI40_11195"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF004349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HSU97787.1"
                     /translation="ADAFTADAARSSRSGGDRTPFTIVMPPPNVTAVLHVGHGLNITV
                     QDVIARWRRMRGDETLWLPGTDHAGIATQNIVEKLLASEGKTRFDLGREAFIARTVEF
                     VADTGGSILEQLRSIGASCDWSRTAYTLSPELSVAVREAFVQLYERGLIYRGHRVIHW
                     CPRCLTSLSDEEAEHDEEAGSLYHIRYAIVGEPGKWLTVATTRPETMLGDVALAVNPD
                     DERYASLIGKTVILPIAELEIPIIGDAYADPAFGTGVVKITPAHDPNDFEVGKRHDLP
                     MPVIMTAEGNIDNVTDAEGRVPPELRGVERFEARDRIVAMLKESGALAKVEAHQHAVR
                     HCYRCGTVVEPRLSDQWFVRMRELAAPALDGVRTGRIRILPERWEAVYVNWLEGIRDW
                     NISRQLWWGHRIPVWYCENRGCVTVSRTDVTSCPKCGGPVRQDEDVLDTWFSSWLWPF
                     STLGWPNVDAADLKAFYPTDDLVTAPEILFFWVARMVMAGYAFMGDAPFHTIYLHGTV
                     RDTNHVKMSKSLGNGIDPLDVVRLYGADALRYTVISGMGMGADLVLDPSDLDRSFAPG
                     RNFATKLWNIGRFLLTKVGEEPVASIADIDDSRLSRADRWILERLNIAISECDAAFGP
                     ARPTGATWKQNELHAGLRLNEYAETARRFVWNELADWYLESVKSRVATEGDDRDVARA
                     VLVHVFDAALRMLHPVIPFITEALWQRLPERTAKDSDLLCTAAWPVAMRVAAGAAEFE
                     RVRECVDALRAMRAEYGVTPGKIIHAVVVATTTPDLYVTEAALIGQLARATLTVSGRV
                     DGPAVHALLADGSDLVISLGGLVDIEQERRKLEVELNQLEGQLSALRGRLENVAFTAR
                     APAHIVDAERTKERDWSARVDALRKKIVTLGVGT"
BASE COUNT          837 a         1429 c         1441 g          846 t
ORIGIN      
        1 tcacccagtg cggtgaagtg atccagtatc gcctgcaggt tcgtaccgcc gccggatgca
       61 agcactgcga tgcgcgtttt cacgattgcg ctgcaccaag caggatgtcg accgcgtcgc
      121 caagcgaggc aacgatggcg acattctcgt ccctcgcacg ctcgacgtct tcgggtgggg
      181 tgttcggtcc actgatgagc accggcgtgc cgcccagtcg atgaaacggt tccacatccc
      241 gccatctgtc gccgacgtag cctggcgcgc tcatgttaag agtgtgctcc gcgacggcgc
      301 gctcgaacag cgcgatccct ggcttgcggc aactgcacgg tcccgtgaaa tccggatggt
      361 cgggacagta gtaagtcgca tcgatcgtgg ctccgctttc attcagaagc tgatccagcc
      421 gcatctgtgt aagcagatag tcggccacag tgaaacggcc gcgcgcgatt ccggactgat
      481 tcgttatcac gatcactgga atacgctcgt ggttgagccg tgcgatggca tgcgcggcgc
      541 cgggaaggag ctcgacatct tccgggcgtg acagatagct cacgtcgcga atgatggttc
      601 cgtcccgatc cagaaagacc gtagtcggtg cctgggccat taacgccagc ggtgcgcgat
      661 gatgattgcg tgcatcatcg cgctggtcgt acgcgccttg tagtgtcgga cgctgcgggt
      721 ctggtcggcg ttcccttcgt tgcagctggc ttttccgtct tcggcacggt gaaggtccgg
      781 tcagacgaca acttccggcc cgtcggtccc gttgcgttga gcgcgtcgag gcggtacgta
      841 gcacccggtt gcagcggttt cgcgagtacg atgatgacgt cgcgaacgag cagggggcgc
      901 gtcggtttgg gcaacacaat cttcgccggt ggagcgcgac gttgcggaac cgggatcacc
      961 gactgctgcg tcgggacagg cggaggcagc ggcatcgcgt gtgccgtatc cgggtgcatc
     1021 gccgtaacgg aaacgatcgc aacgtgcgac gagtccggag ccgtcagcgt gaattgcgct
     1081 ggcgtgagcg gcacgcgcgg atcgattggc gtgtcgaagt tggcgtgaag cgtgacagaa
     1141 tcctgtacac tcacgcttcc gagcttgggc ccggtagagt cgtgcgcgaa tgcgagtatt
     1201 tcgagattga gtgaatcggc gagatcgacg cgcgtcgtgt cgaacgcctc gcccgggtcg
     1261 agtccacggt tccggttccc gtcggcgtag ccgcgaacct gatagcgtgc gggtggcagc
     1321 ccgacgagac ggtagtgccc gatcgaatcc gaggccgtta cgtaaacgat tgacgtatcc
     1381 gtctgtggtc gcacctcgat catgccgcta ttgatcggca gtcccgaaag ccagtcgaag
     1441 atcgtgcccc ggatcgatgt gtgtggaatc gacgggccgg tcgaaaatgt gacgacggtg
     1501 ggagtcgttc gcacattgcc acgcaggtcg gccagtcccg gcagtatcgt gaccgtgtac
     1561 gccgtgtttg cgcgccagcc cttgggcggg cgaatgctga gcgacgaccg atgccagtcg
     1621 actacaggct tcccgcgctg cggtgatatc agcaccaggt cggcgagcgt cgtcgcaccg
     1681 gcggggcgtt cggagatgac ctcgtcaaaa tgaatcacga actccttgcc acgtacgccg
     1741 acgctgttcg tgtccggttg aatacgcgtg attgcaggcg gcgtatgccg ctcgggtccg
     1801 ccgggcggaa cgcccggaga tgcgcacgcg aacagtgcaa gcatcgccag cccgttgaag
     1861 acgctgctgc gtcgtatcct caagtaccga ccccgagcgt gacgatcttc ttgcgcagcg
     1921 catcgacacg cgccgaccag tcgcgctcct tggtacgttc ggcgtcgacg atgtgcgccg
     1981 gcgcgcgcgc tgtgaacgct acattctcga gccggccgcg aagtgcggag agctgacctt
     2041 ccagctgatt cagctcgact tcgagtttgc gccgctcctg ctcgatgtcg accagcccgc
     2101 cgagcgagat cacgagatcg ctgccgtcgg cgagtaacgc gtgcaccgct ggtccatcga
     2161 ccctgccgga gacggtaagc gtcgcacgcg cgagctggcc gatcaacgcg gcctcggtaa
     2221 cgtacaggtc gggagtagtc gtcgcgacga cgaccgcatg gatgatcttg ccaggcgtca
     2281 cgccgtattc cgcgcgcatc gcccgcaacg cgtcgacaca ttcgcgcacg cgctcgaatt
     2341 ccgctgcacc ggcggcgacg cgcattgcga caggccatgc ggcagtgcag agaagatcgg
     2401 aatctttcgc ggtccgctcg ggcaaccgct gccacaacgc ctcggtgatg aacggaatga
     2461 cgggatgcaa cattcgcagt gcggcgtcaa aaacgtgaac gagcacggca cgtgcaacgt
     2521 cccggtcatc gccttcggtt gcgacgcgac tcttgacgct ctcgagatac cagtcggcca
     2581 actcgttcca gacgaatcgc cgagcggtct ctgcatattc gttcaatctc aatccagcgt
     2641 gcagctcgtt ctgcttccac gtggcgcccg tcggtcgggc ggggccgaat gccgcgtcgc
     2701 actcggatat cgcgatgttg agacgctcga gaatccagcg atctgcgcgc gagagacgcg
     2761 agtcgtcgat gtctgcgatc gacgcgaccg gctcctcacc aacctttgtg aggagaaagc
     2821 gtccgatgtt ccagagcttg gtggcgaagt tgcgacccgg cgcgaacgag cggtcgagat
     2881 cgctcgggtc gagcacgaga tccgcgccca ttcccattcc cgagatcacc gtgtagcgca
     2941 acgcatccgc gccgtacaac cgcacgacgt cgagcggatc gataccattg ccaagtgact
     3001 tggacatctt cacatggttg gtgtcgcgaa ccgttccgtg cagatagatg gtgtggaacg
     3061 gcgcgtcacc catgaaggcg tagccagcca tcaccatacg tgcgacccag aagaagagaa
     3121 tctccggcgc cgtaacgaga tcgtcggtcg gatagaacgc cttgagatcc gcagcgtcca
     3181 cattcggcca gccaagcgtg gagaacggcc agagccatga cgagaaccac gtgtcgagca
     3241 cgtcctcgtc ctgtcgcacc ggtccgccgc acttgggaca cgacgttaca tccgtgcggc
     3301 tcacggtcac gcagccgcga ttctcacagt accacaccgg tatgcggtgt ccccaccaga
     3361 gctggcgcga aatgttccag tcgcgaatgc cttccagcca gttgacgtaa accgcttccc
     3421 atcgctccgg aagtatgcga atgcgtccgg tccgcacgcc gtcgagtgca ggcgcagcga
     3481 gctcgcgcat gcgcacgaac cactgatccg acagacgcgg ctcgacaacc gtgccacaac
     3541 gatagcagtg ccgcactgcg tgctggtgcg cctcgacctt cgcaagcgcg ccgctttcct
     3601 tgagcatcgc gacgatgcgg tcgcgcgcct cgaatcgctc gacaccgcgc agctcgggtg
     3661 gaacacgtcc ctccgcatcc gtgacattgt cgatgttgcc ttccgccgtc atgatcacgg
     3721 gcatcggcag atcgtgacgc ttgcctactt cgaaatcgtt gggatcatgc gcaggcgtga
     3781 tcttgacgac accggtgccg aacgcgggat cggcgtacgc gtcgccaatg atcggaatct
     3841 cgagctcggc gatcgggagt atcacggtct tgccgatcag cgatgcgtac cgctcgtcat
     3901 ccggattcac cgcgagcgcg acgtcgccga gcatcgtctc gggacgcgtg gttgcaactg
     3961 tgagccactt gccaggctcg ccgacgatcg cgtacctgat gtggtacagc gatcccgctt
     4021 cctcgtcgtg ctccgcctct tcgtcgctca gtgaagtgag acaacgcgga caccagtgaa
     4081 tcacacgatg gccgcgatag atgagaccgc gctcgtacaa ttgcacgaac gcttcgcgca
     4141 ccgcgaccga cagctccggc gacagcgtgt aagcggtgcg cgaccagtcg catgacgcac
     4201 cgatcgatcg cagctgttcg aggatcgatc ccccggtgtc ggcaacgaat tccacggtgc
     4261 gggcgatgaa cgcttcgcga ccaaggtcga agcgcgtttt cccctcgctc gccaacaact
     4321 tctcgacgat attctgagtc gcaattccgg cgtggtcggt gcccggcagc cagagcgttt
     4381 catcgccgcg catccggcgc cagcgtgcga tcacgtcctg cacggtgatg ttcagtccgt
     4441 gacccacgtg cagcaccgcg gtgacgttcg gcggcggcat gactatcgtg aagggcgtgc
     4501 gatctccgcc gctgcgactg gagcgggcgg catcggccgt aaatgcatcg gcg
//
LOCUS       DATIMD010000503         9117 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5117771, whole genome shotgun sequence.
ACCESSION   DATIMD010000503 DATIMD010000000
VERSION     DATIMD010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9117
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5117771"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..145
                     /locus_tag="VLI40_11200"
     CDS             11..145
                     /locus_tag="VLI40_11200"
                     /inference="COORDINATES: protein motif:HMM:NF016245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family protein"
                     /protein_id="HSU97788.1"
                     /translation="MQEVITLSVFVPFAYFYMDQPLKMDYLWAALCIVGAVFFVFRGH
                     "
     gene            complement(389..829)
                     /locus_tag="VLI40_11205"
     CDS             complement(389..829)
                     /locus_tag="VLI40_11205"
                     /inference="COORDINATES: protein motif:HMM:NF020977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HSU97789.1"
                     /translation="MSLLGDRLQADLNAARKAQDKSAVLLLGTILSDVKNKRIELRAD
                     PTDDEVLDVLRKGIKRRRESVEMYDKGNRPDLAEKERAEVAALEKYLPAQASEDEVRT
                     AVRAAIAAGATSMGPLMGRVNPQFKGKADGSMISRIAKEELAAS"
     gene            complement(829..1017)
                     /gene="rpsU"
                     /locus_tag="VLI40_11210"
     CDS             complement(829..1017)
                     /gene="rpsU"
                     /locus_tag="VLI40_11210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008538150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HSU97790.1"
                     /translation="MSEVIIQEDENFERALKRFKKKVEKAGILADLRKHRHYEKPSER
                     RKRKMNAATRKNRRHRAM"
     gene            complement(1071..1418)
                     /locus_tag="VLI40_11215"
     CDS             complement(1071..1418)
                     /locus_tag="VLI40_11215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HSU97791.1"
                     /translation="MADESANCVFCKIVRGEIPATLVAENEAAIAFRDLDAKAPVHVL
                     VIPRKHIASLAHSVDPAVLGEVLVLAGDVARQEGLDGGYRVVINTGPDAGQTVHHLHA
                     HVLGGRNMAWPPG"
     gene            complement(1424..2161)
                     /locus_tag="VLI40_11220"
     CDS             complement(1424..2161)
                     /locus_tag="VLI40_11220"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmE family RNA methyltransferase"
                     /protein_id="HSU97792.1"
                     /translation="MIDSDRAAFYSEDAFTVGAQIALAESDASHIAVLRLGVGERVGL
                     RDGAGHIASGTLVRLGRKNALVEVDEVAEVPPPLPIHLLVPVADRDRMLWLAEKAAEL
                     NVASWRPVLWQRSRSVSPRGDGPTFRSKVRTRMTSALLQSRSAWLPEIFPEATPERAI
                     AASPEGSRVVLEASGRAFSAISVAEPMVVAVGPEGGFDAEELDGLQAAGFRLASIGHS
                     ILRFETAAVAGVAVARALLEANLISDR"
     gene            complement(2158..2985)
                     /locus_tag="VLI40_11225"
     CDS             complement(2158..2985)
                     /locus_tag="VLI40_11225"
                     /inference="COORDINATES: protein motif:HMM:NF018076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HSU97793.1"
                     /translation="MSNEWRAVRVEQCADRDAVMSALFAAGSQGVHEDGDALVTHFPP
                     EFDTAIVVTTVHDADPAAIVTITDVPAVDWSEWRASVDAHRVGRLVVTPPWRAAEFDP
                     ATTIVIDPAMAFGTGEHPTTRGMLRLMQRSIQPGDSVADLGAGSAVLSIAAAKLGATR
                     IAAIEIDDGAEGSAIENIRMNGAESAIRYLVGDATVLLALVAPVRVILANIVSSVLME
                     LLPDMTGSLAADGVALLSGILVEERDLMIRAIDRAGLRVESEDVEGDWLSILASRVS"
     gene            complement(2982..4115)
                     /gene="dnaJ"
                     /locus_tag="VLI40_11230"
     CDS             complement(2982..4115)
                     /gene="dnaJ"
                     /locus_tag="VLI40_11230"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HSU97794.1"
                     /translation="MADYYETLGVPRAASDDDIKKAYRKLAMQFHPDRNNGSPESEEK
                     FKEITEAYDILRDGNKRAAYDRYGEAGLKGGGFGGFHHVDLSEALNIFMRDLGGMGGF
                     NDLFGRRASAAETRTGSDIRISLGLTLQEVATGVEKPVTIKLLNPCDYCKGTGAEPGT
                     SVSTCPTCKGAGEVRRAQQSFFGPVVSVSVCPNCAGDGKVVASPCKKCRGEGRVRSEE
                     QVNIKVPAGVATGQYMTLRGVGNAGPRGGPRGDILVVFEVDEDERFERDGEDLLTEVL
                     VTYPQLALGADVEVPTVTASVTLRIPAGTQSGQVMHLRGRGLPRINASGTGDLHVRLQ
                     LWTPDVLNEEEATLLRRLYEIRPVAPARRERGFWAKVKESLGA"
     gene            complement(4155..5189)
                     /gene="hrcA"
                     /locus_tag="VLI40_11235"
     CDS             complement(4155..5189)
                     /gene="hrcA"
                     /locus_tag="VLI40_11235"
                     /inference="COORDINATES: protein motif:HMM:TIGR00331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HSU97795.1"
                     /translation="MALAELTDRERMVLEAVIQTYVATAQPAGSRQLARRFNFGVSPA
                     TIRNTMSDLEEKGYLFHPHTSAGRVPTDVAYRVYVDSILPAHKFTTAERDSLALQISS
                     GGSAVENILRRAAQSLGIITQELGVALGPRFDASVLNRIELVRLASDRLLVVLSVQGG
                     GVRTIYVDARGQIADEAIAEVSRVLNERLSGLTLREVRNSLSQRLRDTTVGASELINV
                     FVEEGEHIFDEAFDSANDVMLGAASVLAEQPEFASADSMRRLVALTETRQYLAEVLRK
                     RSESSGVSITIGNEHDDPALENFTLVTAQYHVGALNGVIGVIGPTRMPYDKVISLVTH
                     TSQLVTDLLD"
     gene            complement(5203..6348)
                     /gene="hemW"
                     /locus_tag="VLI40_11240"
     CDS             complement(5203..6348)
                     /gene="hemW"
                     /locus_tag="VLI40_11240"
                     /inference="COORDINATES: protein motif:HMM:TIGR00539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HSU97796.1"
                     /translation="MLAGRSDSAPIMVDTVRHLYIHVPFCARRCSYCDFSIAVRSSVP
                     VANYVESIALEIARHDTRQWDLDTIYLGGGTPSRLGAGAADVVKIVRDHASVAPGAEL
                     TIEANPDDVTPENAVAWADAGINRVSLGAQSFDPAVLEWMHRTHSVDQVPNAVAAIRA
                     AGISNISLDLIFALPSSLSRDWAADLDRALELEPGHVSLYGLTVEPHTPLGRWRERGQ
                     VVEAPEERYETEFMMAHERLAAAGYEHYEVSNFGRPGRRSRHNSSYWTGEPYAALGPS
                     AHSFHGNVRSWNVPAYADWERRLRSGESVVAESESLTEENRLSERVYLGLRTMDGLAA
                     TDAEIAVARPWVDAGWAEIINRTIVLTATGFLRLDALAASLTLAGSR"
     gene            complement(6315..7175)
                     /gene="dprA"
                     /locus_tag="VLI40_11245"
     CDS             complement(6315..7175)
                     /gene="dprA"
                     /locus_tag="VLI40_11245"
                     /inference="COORDINATES: protein motif:HMM:TIGR00732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HSU97797.1"
                     /translation="MRHTFRVVRPGDDEWPADIDTISSPPKSLHYTGDITVLAQPRVA
                     IVGSRHPTAYGERVARELSSALASAGACIVSGMAFGVDAIAHRAALECGGTTAAVLGA
                     GIDTVYPRSHVALYDEIAQHGVVLSEFGIGIGTFNGCFPRRNRIIAGLCRLTIVVEAG
                     AKSGSLITAGYAGDFGRNIAAVPGLIDSPQSAGTNQLLRDGAQVIASIDDALALADLS
                     ASASARIPLSLGADEATVWDAVAQHADASADEIITRTGWPASRCLAALTQLEIQGLLE
                     CSPGGVIARR"
     gene            complement(7178..8200)
                     /gene="obgE"
                     /locus_tag="VLI40_11250"
     CDS             complement(7178..8200)
                     /gene="obgE"
                     /locus_tag="VLI40_11250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HSU97798.1"
                     /translation="MFIDKVTVRVIAGTGGSGCQSFRRESLVPMGGPDGGDGGRGGDV
                     IVRGDSNLATLLDYTYRDEWAADRGQHGMGSNMTGKSGKDIYMPVPPGTIVRDKVTGE
                     ILADVLADGEEFIVAKGGRGGKGNAFFVTPTHQSPREWQPGEEGQERTLELELKLIAD
                     IGLVGQPNAGKSTLLSVISAARPKIADYPFTTLQPNLGVVQLSDHRTFVVADIPGIIE
                     GAAEGRGLGLQFLRHIERTRILAMLIPIDAMDWQAEYDQLRVEVAKYSEELAAKPHCV
                     VFTKLDLFGEQYVPPIEAPGAFAVLSISAANREGLSPLLAAWWSELLRLKVEAAKPSE
                     AVAPLP"
     gene            complement(8203..8838)
                     /locus_tag="VLI40_11255"
     CDS             complement(8203..8838)
                     /locus_tag="VLI40_11255"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HSU97799.1"
                     /translation="MNSNTEHETPFSESMRALIRIAAAVAGAPLAFTRRVMVEAVGVA
                     PARAVDEVLLQSYLFAGFPRTLNALRVWREVSGEPAPADDVATTPSLPEVYRLQGEEV
                     CRTVYGNKYDALRKTVGRLHPALDAWMVMDGYGKVLSRPGLTLVQRELCIVAACAASE
                     QIPQLKSHLHGALHCGATPDDLALTLSALTDIVSREALAAAREELNRIKES"
     gene            complement(8896..>9117)
                     /locus_tag="VLI40_11260"
     CDS             complement(8896..>9117)
                     /locus_tag="VLI40_11260"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF017864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HSU97800.1"
                     /translation="GVHSAAIVSDGIGIALKVEDGASRAQYPALLALLQHLGALPDPL
                     PQRLAEIARKPVRDTRHEVVGEIVVRAMI"
BASE COUNT         1659 a         2957 c         2827 g         1674 t
ORIGIN      
        1 gctcaagatc atgcaggaag taataacgct gagcgtgttc gtgccgttcg cgtacttcta
       61 catggaccag ccgctgaaga tggactatct gtgggcggca ctgtgtattg tcggggcggt
      121 gttctttgtg ttcagggggc attgagcgca gacgagagca cgttgacgat cgggtctcgc
      181 cgtccccgcg aaagcggcgg tccatctatc cgccgtcatt cccgcggaag cgggaatcca
      241 tgttaccgat ctctggatgc gacgacagca cgaacctggt cggcagcaga tggattcccg
      301 ctttcgcggg aatgacgagt ttctgagccc gcgttcgcgg gaatgacggc ggacacatgg
      361 attcccgagg cgcggatgaa tccgcgccct acgacgccgc caattcttcc ttcgcgatgc
      421 ggctgatcat gctgccgtcg gcctttccct tgaattgcgg attgacgcgg cccataagcg
      481 gtcccatgga ggtggcgccg gctgcgatcg cggcgcgcac cgctgtgcgg acttcgtctt
      541 cgcttgcctg agctggcagg tacttctcga gcgctgcgac ttccgcgcgc tccttctcgg
      601 caagatcggg gcggttcccc ttgtcgtaca tctcgactga ttcgcgccgg cgcttgatcc
      661 ccttgcgcag cacgtccagt acctcgtcgt cagtcgggtc ggcgcgaagc tctatgcgct
      721 tattcttgac gtcggacagt atcgttccca gcagcagtac cgcgctctta tcctgcgcct
      781 tgcgcgcagc attgaggtca gcctgcagcc tgtcgcctag aagcgacatt acatcgcgcg
      841 atgacggcga ttcttgcgcg tcgccgcatt catcttgcgc ttgcgacgct cgctcggctt
      901 ctcgtagtgg cgatgcttgc gcagatccgc gagaatcccc gccttttcga ccttcttctt
      961 gaagcgtttg agcgcgcgct caaagttctc gtcttcctga atgatgactt ctgacaaacc
     1021 ctattgcccc cgatcctgta acggttgatg tgcagccttt aataataatc tcagccaggc
     1081 ggccacgcca tgtttcggcc gcccagaacg tgggcgtgga ggtggtggac ggtctggccg
     1141 gcatccggac cggtgttgat aaccacccgg tagcctccgt ccagcccctc ctggcgagcc
     1201 acgtcgccgg caagaacgag gacctcgccc agaacggcgg gatcgacgga atgggccagc
     1261 gaggctatgt gtttccgcgg gatcaccagc acatgcacgg gcgccttcgc gtccaggtcg
     1321 cggaaggcga tcgccgcctc gttctcggct acgagggtgg caggaatctc cccgcggacg
     1381 attttgcaga aaacacagtt tgcggattcg tccgccatga gaattaccgg tctgagatga
     1441 ggttcgcttc cagcaacgcc cgggccaccg cgacgccggc gaccgccgcc gtctcgaacc
     1501 tcaggatcga gtggccgatc gacgccagcc tgaacccggc agcctggaga ccatccagct
     1561 cctccgcgtc gaagccgcct tcgggaccga ccgcgaccac catcggctcc gcaacgctga
     1621 tggcgctgaa cgcccggccg ctggcctcga gcacgactcg cgagccttcc ggtgaggcag
     1681 cgatcgcacg ctccggcgtc gcctccggga atatctcggg cagccacgcg gatcgtgatt
     1741 gaagcaacgc ggaagtcatg cgcgtccgca ccttgctccg gaaggtgggg ccgtcgccac
     1801 gcggcgatac gctgcgcgac cgctgccaca aaaccggacg ccagctcgcg acgttgagct
     1861 cggccgcctt ctcggcgagc cataacatgc ggtcgcgatc ggcgactggc accagaagat
     1921 gaatcggcag cggcggaggc acctcggcaa cttcatcgac ctcgaccagc gcgttcttgc
     1981 gaccgagccg gacgagtgtg cccgatgcga tatggcccgc cccgtcgcgc agaccgacgc
     2041 gctcgccgac gccaagacgc agcaccgcta tgtgcgacgc gtcgctctcc gccagcgcga
     2101 tctgcgctcc gactgtgaac gcatcttccg aatagaacgc ggcccggtcg gaatcgatca
     2161 cgaaacgcga ctcgcgagga tactcaacca gtccccttcg acgtcttcgg attcgacgcg
     2221 caggccagca cggtcaattg cacggatcat gagatcgcgc tcctcgacca ggatcccgct
     2281 caacaacgca acgccatctg ccgcgagcga gccagtcatg tctggaagca attccatcag
     2341 gaccgatgat acgatgttcg cgagaatcac acgcacgggc gcgaccagcg cgagcagcac
     2401 cgtcgcatcg ccgacgagat aacggatcgc actttccgcg ccgttcatgc ggatgttctc
     2461 aatcgctgat ccctcagcgc catcgtcgat ttcaattgcc gcgatgcgcg ttgcgccaag
     2521 cttggcagcg gcgatcgaca gcaccgcgct gcccgcgccc agatcggcaa ccgaatcgcc
     2581 gggctgaatg ctgcgctgca tgagccggag catgccgcgc gtggtgggat gctcgccggt
     2641 cccgaacgcc atcgcggggt cgatgacgat ggtcgtcgcg ggatcgaatt cagctgcacg
     2701 ccacggcggc gtcacaacga ggcggccaac acgatgagcg tcgacgctcg cgcgccactc
     2761 gctccaatcg acagccggta cgtcggttat cgtgacgatt gcggctggat cggcatcatg
     2821 cactgtcgtg acgacgatcg ccgtgtcgaa ctccggcgga aagtgtgtga ccagggcgtc
     2881 accgtcttcg tgcacgccct gcgagccggc tgcgaacagc gcgctcatca ccgcatcgcg
     2941 atcggcgcac tgctcgacac gaaccgcgcg ccattcgtta ctcacgcgcc caacgattcc
     3001 ttgacctttg cccagaatcc gcgttcacgt ctcgccggtg ctacgggacg gatctcgtag
     3061 agccggcgaa gcagtgtcgc ctcctcctcg ttcagcacgt ctggagtcca gagctgcagc
     3121 cgcacgtgca gatcacctgt gccggatgcg ttgatgcgtg gaaggccgcg cccgcgcaga
     3181 tgcatcacct ggccgctctg ggttcccgcg ggaatacgca gcgtcaccga agccgtgacc
     3241 gtcgggactt cgacgtcggc gccgagtgcg agttgtggat aggtgacgag aacttcagtg
     3301 agcaggtcct cgccgtcgcg ctcgaagcgc tcgtcctcat ccacctcgaa cactacgagg
     3361 atgtcgccgc gcgggcctcc gcgcggaccg gcgttgccga cgccgcgcaa cgtcatgtac
     3421 tgacccgtcg cgactcccgc cggaaccttg atgttgacct gctcttcgga gcggacgcgt
     3481 ccctcgccac gacacttctt gcacggcgac gcgaccacct ttccgtcacc ggcgcagttg
     3541 gggcacaccg atacgctgac caccggcccg aagaacgact gctgagcgcg acgcacctcg
     3601 cccgcgccct tgcaggtggg acaggtactc acgctcgtgc cgggctccgc gccagtgcct
     3661 ttgcagtagt cgcaaggatt caacagcttg atcgtgacag gcttctcgac gccggtcgct
     3721 acttcctgca gcgtcagccc gagactgatg cgaatgtcgg agccggtgcg cgtctcggct
     3781 gcgctggcgc gacgaccgaa caggtcgttg aagccgccca tgccacccag atcgcgcatg
     3841 aagatgttga gcgcctcgga gaggtccaca tggtggaagc cgccgaagcc gccgcccttg
     3901 aggccagcct cgccgtagcg atcgtaggct gcgcgcttgt tgccgtcgcg caggatgtcg
     3961 tacgcttcgg tgatctcctt gaatttctcc tcggattccg gcgagccgtt gttgcggtcc
     4021 gggtggaact gcatcgcgag cttgcgatat gccttcttga tgtcgtcgtc cgacgcggcc
     4081 cgcgggacac cgagtgtttc gtaatagtct gccatgcgtg tagtgatgcg ttgggtaatg
     4141 cgtgtagtaa tgcgttaatc gagcaggtcg gtgaccagct gagatgtatg agtaacgagc
     4201 gaaataacct tgtcgtacgg catccgggtg ggtccgatga cgccgatgac gccgttcaac
     4261 gcaccaacat gatactgcgc cgtaacgagc gtgaaattct cgagcgcggg atcatcgtgc
     4321 tcgttgccaa tagtaatact cacgccggag gactcgctgc gcttgcgcag cacctcggcg
     4381 agatactgcc gtgtttcggt caacgcaacg agcctgcgca tgctgtccgc gctggcaaat
     4441 tcgggttgct cggccagcac ggaagctgcg ccgagcatca cgtcgttcgc ggagtcgaag
     4501 gcctcgtcga agatgtgctc gccttcttcg acgaagacgt tgatgagctc ggacgcacca
     4561 acggtcgtat cgcggagccg ctgcgacagc gagttgcgta cctcgcgcag cgtgagtccg
     4621 ctcagtcgct cgttgagtac gcgcgaaacc tccgcgatcg cttcgtcggc gatctgtccg
     4681 cgcgcgtcaa cgtagatcgt gcgaacgcct ccaccctgca ccgacaacac cacgagcagc
     4741 cgatcggatg caaggcgcac gagctcgatg cggttgagaa cgctggcatc gaagcgcggc
     4801 cccagcgcaa cgccgagctc ctgcgtgatg ataccaagac tctgcgcggc ccggcggaga
     4861 atgttctcga cggcagatcc gccactcgat atctgcagcg cgagactgtc gcgctcggcg
     4921 gtcgtgaact tgtgtgcggg aaggatcgag tcgacgtaaa cgcgatatgc gacgtcggtg
     4981 gggactctcc cggccgacgt gtgcggatga aagagataac ccttctcttc caggtcgctc
     5041 atggtgttgc gaatggtcgc cggcgaaacg ccgaaattga accgacgggc aagctgacgc
     5101 gacccagcgg gctgggcggt cgcgacatac gtctgtatta cggcctcgag caccatgcgc
     5161 tctcggtcgg tcagttcggc aagtgccata agtgcaatag tatcaacgac ttccggcgag
     5221 tgtcaaggac gccgcgaggg cgtcgaggcg aagaaagcca gtcgccgtta gaacgatcgt
     5281 tcggttaatg atttcggccc atccggcatc gacccaagga cgagcgacgg caatttccgc
     5341 atctgtcgcg gcgaggccgt ccatcgtgcg caaccctaga tacacccgct cggacaaccg
     5401 gttctcctca gtgagcgatt cggactctgc aacaacgctc tcgccggagc gaaggcgtcg
     5461 ctcccaatct gcgtacgccg ggacgttcca gctacggaca tttccgtgga acgagtgtgc
     5521 ggacggtccg agtgcggcgt atggctcgcc ggtccagtac gacgagttgt gcctggagcg
     5581 gcgcccgggg cggccgaaat tggagacttc gtagtgctcg tatccagcgg ccgcgagtcg
     5641 ttcgtgtgcc atcatgaact cggtctcgta gcgctcttcc ggcgcctcga cgacctggcc
     5701 ccgctcgcgc cagcggccaa gcggcgtgtg cggctcgacg gtgagcccgt acaacgagac
     5761 gtgcccgggc tccagttcca gcgcgcgatc cagatcagcg gcccagtcgc gcgaaagcga
     5821 gctcgggagg gcgaaaatca gatcgagcga gatgttgctg attccggcgg cgcggatggc
     5881 cgcgacggcg ttgggtacct gatcgacaga atgggtccgg tgcatccact cgagaaccgc
     5941 tggatcgaac gactgcgcgc ccagcgagac gcgattgatc ccggcatcgg cccacgcgac
     6001 agcgttctca ggcgtgacat cgtcagggtt tgcctcgatc gttagctctg caccgggagc
     6061 gaccgatgca tgatcccgga caatcttcac aacatcagcc gcgccggcac cgaggcgtga
     6121 cggggtaccg ccgcccagat agatagtgtc gagatcccac tgccgcgtgt cgtgtcgcgc
     6181 gatctcgagt gcgatcgact cgacataatt cgcgaccggc accgagcttc gcaccgcgat
     6241 cgagaaatca caatacgagc aacggcgcgc gcagaacggc acgtggatgt agaggtggcg
     6301 cacggtatcg accattatcg gcgcgctatc actccgcccg gcgagcattc caggagcccc
     6361 tgaatctcca gctgagtaag cgccgcgaga caacggctcg cgggccatcc ggtgcgcgtg
     6421 attatctcgt cagcgctcgc gtccgcgtgc tgcgcgacgg cgtcccacac cgttgcctcg
     6481 tcggcgccga gcgagagtgg aatgcgcgca ctcgcactcg cgctcagatc cgcgagcgcg
     6541 agtgcgtcgt cgatgctggc gattacctga gcgccgtcgc gaagaagctg gttcgtgcct
     6601 gcgctctgcg gcgagtcgat cagtccggga accgctgcaa tgttgcgccc gaaatcgccg
     6661 gcgtagcccg cggttatgag agatccgctc ttcgcgcccg cttcgacgac gatcgtcaaa
     6721 cggcagaggc cggcgattat gcgattacga cgcgggaagc aaccgttgaa ggtgccgatg
     6781 ccgatgccga actccgatag caccacgcca tgctgtgcaa tctcgtcgta cagcgcgacg
     6841 tgcgagcgtg gatacacggt gtcgattccc gcgccgagta cggcggcggt tgtgcctccg
     6901 cactccagcg ctgcgcggtg agcgattgca tcgacgccga aggccattcc gctcacgatg
     6961 cacgcaccgg cggatgcgag tgcgctcgac agctcgcgcg cgacgcgctc gccgtaggca
     7021 gtcgggtgac gactacctac tatcgcgacg cgcggctgtg ccagcaccgt tatgtcgccc
     7081 gtgtagtgca gcgatttggg cggcgacgaa atcgtgtcga tatccgctgg ccactcatcg
     7141 tcgcccggac gcacgacgcg gaatgtgtga cgcacactca cggaagcggc gcgaccgcct
     7201 cgctgggctt ggcggcttcg accttgagac ggagcagctc gctccaccat gccgcgagga
     7261 gcggcgacaa accttcccgg ttggcagcac tgatcgagag aaccgcaaat gctcccggtg
     7321 cttcgatcgg gggaacgtac tgctcgccga agagatccag cttggtgaac acgacgcagt
     7381 gcggcttggc cgcgagctcc tcgctgtatt tcgcgacttc gacgcgcaac tgatcgtact
     7441 ccgcctgcca atccattgca tcgatgggga tgagcatggc gaggattcgc gtacgctcga
     7501 tgtggcgcag aaactgaaga ccgagtccgc gtccttcagc tgctccttcg attatgccgg
     7561 gaatatccgc aacgacgaac gtgcggtgat cagaaagttg taccacgcca agattcggct
     7621 gaagcgtcgt gaagggatag tccgcgatct tggggcgcgc ggcagaaatc acggatagca
     7681 gcgtcgactt tcccgcgttg ggctggccga cgagtccaat gtcggcgatg agcttgagct
     7741 ccaactcgag tgtgcgctcc tggccctcct cgccgggctg ccattcgcgc ggcgactgat
     7801 gcgtcggcgt gacgaagaac gcgttcccct tgccgccgcg gccgcccttg gcgacgatga
     7861 attcttcacc atcggccaga acgtcggcga gaatctcgcc tgtcaccttg tcgcgcacga
     7921 tggttcccgg cggaacgggc atgtagatgt cctttccgct cttgccggtc atgttcgagc
     7981 ccatgccgtg ctggccacga tcagcggccc attcgtcgcg gtacgtgtag tcgagcaagg
     8041 tggcgagatt ggaatcaccg cgcacgatca catcgccgcc gcgcccgccg tcgccgccat
     8101 caggtccacc catcggtacg agactctcgc gccggaacga ctggcatccc gacccgcccg
     8161 tgcccgctat gacgcggact gtgaccttat ctatgaacat cgtcaactct cctttattcg
     8221 gttcagttct tcacgtgcgg cagcaagtgc ctctcgggag acgatgtcgg tgagcgccga
     8281 taacgtcagt gccagatcat ccggtgttgc gccgcaatgg agcgcaccat gcagatgcga
     8341 tttgagctgc gggatctgct ccgacgccgc acatgcggcg acgatgcaca gctcccgctg
     8401 taccaacgtc agtccaggac gcgagagcac cttcccgtat ccgtccatca ccatccacgc
     8461 gtcgagcgcc ggatgcaatc gtccgaccgt cttgcgcagc gcgtcgtact tgttgccgta
     8521 caccgttcga cacacttcct caccctgcag gcggtatacc tctggcagtg acggtgtggt
     8581 agcaacgtca tccgccggag ctggctcgcc cgacacttca cgccagacac gcaatgcgtt
     8641 caatgtgcga gggaagcccg cgaacagata cgattgcagc aagacctcgt ccaccgcgcg
     8701 cgccggcgcg acaccgacgg cctccaccat cacgcgtcgc gtgaatgcca ggggcgcgcc
     8761 ggcgactgcc gcggcaatgc ggatgagcgc acgcatcgat tcgctgaagg gcgtttcgtg
     8821 ttcggtgttg gaattcataa tgtcaacgat acgtcaagtc acgcacggcg ccacggcgca
     8881 tctgtgcgcg acgaatcaga tcattgcgcg aacgactatc tcacccacga cctcgtgacg
     8941 agtatcgcgc accggcttgc gtgcaatttc ggcaaggcgt tgtggcaagg ggtcaggcaa
     9001 tgcaccaagg tgctgcaaca gcgcgagcaa cgccggatac tgtgcgcgcg acgcgccgtc
     9061 ctcgaccttg agcgcgatgc cgatcccgtc actcactatc gccgcggaat gaacgcc
//
LOCUS       DATIMD010000504         3386 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3954326, whole genome shotgun sequence.
ACCESSION   DATIMD010000504 DATIMD010000000
VERSION     DATIMD010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3386
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3954326"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            177..674
                     /locus_tag="VLI40_11265"
     CDS             177..674
                     /locus_tag="VLI40_11265"
                     /inference="COORDINATES: protein motif:HMM:NF028057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HSU97801.1"
                     /translation="MNRKLIPGLLQGVLPALLAAVVMAVPAGAQKAARHTTAKARASS
                     SGPSGAWRSIYSDATVKVALDTTQTKRAPDGTYRVRLRWQYPTNQMIGTRHAYRTMVD
                     RKMIDCTTQGIKPVSAQTYDANGKPVAGYDTPDSQLVQIDWAKRPPGSSAGKAYAAVC
                     GAIRK"
     gene            complement(803..2206)
                     /locus_tag="VLI40_11270"
     CDS             complement(803..2206)
                     /locus_tag="VLI40_11270"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/sulfonate/bicarbonate ABC transporter
                     ATP-binding protein"
                     /protein_id="HSU97802.1"
                     /translation="MTTAISAPAASERGEVILEARAVDKYYGDDRTPVLDHVSVALHA
                     GEFVALLGPSGSGKSTLLRLLSGLMPPSSGRVLSHGEDLTGINPNVAIVFQSFALFPW
                     LTVLQNVELGLLAAGVPAEQRRERAIAAIDLIGLDGYEEAFPKELSGGMKQRVGFARA
                     LVVQPEVLFMDEPFSALDVLTGETLRAELQELWSSRSMPTKAVLLVTHNIEEAVTLAD
                     RILVFGANPGHIRIELPGLPAHERAHHGPARQHLVDAIYRVMTNPTEDASTLVGRPSA
                     PARPERPRRYQVLPDVGIDDLTGFVQYLSTMGGRANVHDLARDLQLRSDDVLAIVEAS
                     DLLGFADLQDRAVVITQPGNEFADADLDVEKAMFRRYALAHVSLLRHIVRELDASPSG
                     TLDSDRLMEELEEAFSGGEARRQFETVVDWGRYAELFSYDDASGELRLDPETGVGAAE
                     ALREAMTAGWSVEGEES"
     gene            complement(2217..>3386)
                     /locus_tag="VLI40_11275"
     CDS             complement(2217..>3386)
                     /locus_tag="VLI40_11275"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSU97803.1"
                     /translation="PFGAIALIQNSMMSWAGGWFFLMASEQFVLGANNLRLPGLGSYL
                     AAAAEARDTRAIIWGIVALVTVIVLLDQILWRPLVAWSDKFKFEQSSGDASESWMLDL
                     LRNSALVAWLHDHTVAPVERSLDRPREPRKRSIPMVPRWMRVLAGLLLGLAAIAIVVW
                     GGLAAFHAVSGLAARTWWTIFVATLATFGRTLAALVIATAWTVPFGVAVGMSPKWSRR
                     LQPVVQVIASIPATALFSVLLLILLSLPGGLNIAAIALMVLGTQWYVLFNVIAGAMAI
                     PSDLKEAAGVYGLSGWRRWKVLIIPAIFPYLVTGLITATGGAWNASIVSEYVIFAGHK
                     ISTVGLGALIAEAADAQNFPLLLASTLVMAAVVILGNRLVWRRLYRIAQSRYRLE"
BASE COUNT          707 a         1109 c         1025 g          545 t
ORIGIN      
        1 ccgcgcggaa actctccagg cctgtagagc agacgatctt cttctccggc gaggcgacga
       61 ataccgaggg acacagcggc accgtggaag gggcgctcgc cacaggattg agagcggcac
      121 aaggagtgct ccaggcgtta ggatcagaag acattccaaa ccagtgaggt cagttagtga
      181 atagaaaact catcccgggc ctgctccagg gcgtgctccc tgccctgctc gcggccgtcg
      241 tcatggccgt cccggcaggc gcccagaagg ctgcgcgaca cacgacagcg aaggccaggg
      301 caagcagctc ggggccgtcg ggcgcgtggc gcagcatcta cagcgatgcc acggtcaagg
      361 tcgcgctcga cacgacgcag acgaagcggg ctccggacgg cacctaccgc gtgcggctac
      421 gctggcagta cccgaccaac cagatgatcg gcactcggca tgcctaccgc acgatggtgg
      481 accgcaagat gatcgactgt accactcagg gaatcaagcc ggtctctgcg caaacatatg
      541 acgccaacgg caagccggtt gcgggttacg acacgcccga ttcgcagctg gtgcagatcg
      601 actgggccaa gcggccgccg ggaagcagcg ccggaaaggc gtacgcagcg gtgtgcgggg
      661 cgataaggaa gtaggaggcg cgcgggcgga ctcgtcattc ccgcgaacgc agggacccat
      721 ccattcgtca ttcccgcgaa agcgggaatg acgacctttt gacagatctt ccaagctctc
      781 ccaggctctt cccggctccc ttctaactct cctccccttc caccgaccag cccgcggtca
      841 tcgcttcacg aagcgcctcg gcggcgccaa ctccagtctc gggatcgagc cgcagctcgc
      901 cgcttgcgtc gtcgtacgaa aacaactccg cgtaccggcc ccaatcgacg acagtctcaa
      961 actggcgacg cgcctcgccg ccggagaacg cttcctccag ctcttccatg agccggtcgg
     1021 agtcgagcgt acccgacggc gacgcatcca actcacgcac gatgtgtcgc agcagcgaca
     1081 cgtgcgccaa cgcgtaccgg cgaaacattg ccttctcgac gtcgagatcg gcgtccgcaa
     1141 attcatttcc gggttgcgtg atgacgactg cacggtcctg cagatcggcg aagccgagga
     1201 gatcgctggc ttccacgatc gcgagcacgt catcactgcg aagttgaaga tcgcgcgcga
     1261 gatcgtgcac gttcgcgcgg ccgcccatcg tggagagata ctgtacgaat ccggtgagat
     1321 cgtcgatccc gacatcgggc agcacctgat aacggcgcgg ccgctccgga cgtgcaggcg
     1381 cgctcggtct gccaacaagc gtggacgcgt cctcggtcgg attcgtcatc acacgataga
     1441 tcgcatcgac cagatgctga cgggcgggac cgtgatgtgc gcgctcgtgc gcgggaagac
     1501 cgggtagctc gatccggatg tggcccggat tcgcgccgaa taccagaatg cgatcggcga
     1561 gtgtgactgc ctcctcgata ttgtgcgtga ccagcaacac tgccttggtg ggcatcgagc
     1621 gagagctcca caactcctgc agctcggcgc gcaacgtctc gcccgtcagc acatccagcg
     1681 cggagaaagg ctcgtccatg aacagcactt ccggttgaac caccaatgcg cgcgcgaagc
     1741 cgacgcgctg cttcatgcca ccggatagct ctttcgggaa ggcttcctcg taaccgtcga
     1801 gtccgatcag atcgatcgct gcaatcgcac gctcgcggcg ctgttccgcg ggaacaccgg
     1861 ctgcaagcag accgagctcc acgttctgca gcacggtaag ccatggaaac aacgcgaagc
     1921 tctggaatac gatagcgacg ttcgggttga ttccggtaag atcctcgccg tgcgacagca
     1981 cacgaccgga cgacggcggc atcaggccgg acaacaagcg aagcaacgtc gacttgcccg
     2041 atccggacgg gccgagcagc gccacgaatt ctccggcgtg caacgcgacg ctgacatggt
     2101 cgagcaccgg agtgcggtcg tcgccatagt atttgtccac ggcgcgcgct tcgagtatca
     2161 cctcgcctcg ctcgcttgca gccggtgcgg atatggccgt tgtcatgatg ttgccctcat
     2221 tccagacgat aacgcgattg tgcgatgcga tacagtctgc gccacacgag tctatttcca
     2281 agtatcacga ccgccgccat taccagcgtc gacgcgagta acagcgggaa attctgcgcg
     2341 tcggcggctt ccgcgataag cgcacccaat ccgacggtgc ttatcttgtg gccggcgaat
     2401 ataacgtact ctgaaacgat gcttgcgttc catgcgccgc cggtggcggt aatcaatccg
     2461 gttacgagat acgggaagat tgccggtatg atgagcacct tccagcgacg ccatcccgac
     2521 agcccgtaca cgcccgccgc ttccttgagg tccgacggaa tcgccatcgc cccggcgatc
     2581 acgttgaaca gaacatacca ctgtgtgccg aggaccatca gcgcgatcgc cgcgatgttc
     2641 aagccgcccg ggagtgagag aagtatgagc agcaggaccg agaacagcgc cgtcgctgga
     2701 atcgatgcaa tcacctgcac cacgggttgc aatctgcgcg accacttggg gctcattcca
     2761 accgccacgc cgaacggcac ggtccacgct gtggcaatta ccaacgctgc gagtgtgcga
     2821 ccgaacgtcg cgagcgtcgc aacgaatatc gtccaccacg ttcgcgcggc gaggccagac
     2881 acggcgtgga acgcggcgag cccgccccag acgacgattg ctatggcggc gaggcccagc
     2941 aacaaccccg cgagcacgcg catccatcga ggcaccatcg gaatcgagcg cttgcgcggc
     3001 tcccgcggcc gatcgagcga tctctcgaca ggtgcgaccg tgtgatcgtg caaccacgca
     3061 acgagcgcgg agttgcgcag cagatcgagc atccacgatt ccgacgcatc gccgctcgac
     3121 tgctcgaact tgaacttgtc ggaccatgca accagcggac gccacagaat ctggtccagg
     3181 agcacgatca ccgtgacgag tgcgacaatt ccccagatga tcgcgcgggt gtcgcgcgct
     3241 tcggccgcgg cggcgagata cgatcccagc ccgggcagcc gcaagttgtt ggcgccaagc
     3301 acgaactgct ccgacgccat gagaaagaac cagccgccgg cccagctcat catgctgttc
     3361 tgaatgagag cgatcgcccc gaatgg
//
LOCUS       DATIMD010000505         7352 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2224928, whole genome shotgun sequence.
ACCESSION   DATIMD010000505 DATIMD010000000
VERSION     DATIMD010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7352
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2224928"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1295)
                     /locus_tag="VLI40_11280"
     CDS             complement(<1..1295)
                     /locus_tag="VLI40_11280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HSU97804.1"
                     /translation="MATTVIAPPRTSVERAPREVSRPKTGVWSWLTTTDHKRIGQLYL
                     YTSLTFFLLGGIEALVIRAQLFGPNGRLVSAELYNQIFTMHGTTMIFMALMPLSAAFF
                     NILVPLQIGARDVAFPRLNAFSYWVYLLGGIFINASWLWNAAPNGGWFGYAPLSTRLY
                     NPGLNMDFYVIGLQILGLATLSASFNFITTIINMRAPGMRMMRIPVFTWSAFVTQFLI
                     LVSFPVLTVALTFLLFDRFFGTQFYEPAAGGDPLLWQHLFWLFGHPEVYILILPAFGL
                     VSEVLPTFARKPLFGYPAMVYSLILIGFLAFGVWAHHMFAVGMGPIADATFSVTSMLI
                     AIPTGIKIFNWLATVWGGSIRFATACLFALGLVAMFTIGGISGVMHASAPTDLQQTDT
                     YFVVAHIHYVLFGGTMMGLFAGFYYYFPKVTGRLLDEKLG"
     gene            complement(1439..2161)
                     /locus_tag="VLI40_11285"
     CDS             complement(1439..2161)
                     /locus_tag="VLI40_11285"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSU97805.1"
                     /translation="MTMARPAEGSSAAIVELLRQMPIFAELEDTTIHQLAARCVTRDF
                     GVGRVLFTAGDACRGLYMIQSGRVRIYRTSPDGKEQILHIEGPGRPVAELPLFDGGPY
                     PASAITLEPSRLMFLARDDFEAMYREHPDVAHGVIRALGKRLRHLVQVTETLAFHDVA
                     ARLAMLLVGYTERSGLPTPLGIEITLDRTQEELSMEIGSARESVSRAMRQLKRTGLVQ
                     SLPRGRLRIPDVAKLRSRAQGR"
     gene            complement(2158..2937)
                     /locus_tag="VLI40_11290"
     CDS             complement(2158..2937)
                     /locus_tag="VLI40_11290"
                     /inference="COORDINATES: protein motif:HMM:NF013488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HSU97806.1"
                     /translation="MSDRSIAELWEWAEYYCPWCYVMAVRVHHIQPEYTGRVLAYTRF
                     FPLELLNHEAPPRDVLEQEWWLAAIQEPDAAFVPYTAPDWPTTTLPAFEAVWAARQQG
                     MSIAMNLDLAVRRAFFGESRNIGDRSVLLELARATDLDFKQFERDFASPAARAAVAEE
                     GRIGREQYHVRGTPTMMLQDGTRLRTPIAMAKIRNRRIVSVPPLTHVGEARFDATRAL
                     FEDAIEQRRARDTREIFRDSTVDSFPASDAPSWSPLRIGAP"
     gene            3056..3367
                     /locus_tag="VLI40_11295"
     CDS             3056..3367
                     /locus_tag="VLI40_11295"
                     /inference="COORDINATES: protein motif:HMM:NF013999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HSU97807.1"
                     /translation="METHDTNADDIWNALRTVIDPEIGLDIVTLGLVYDVACGNDSAV
                     PGETVRITHTLTTPGCPMERVITSGIRAAVGRVPGVAAVETNLVWDPVWHSGMIAPGA
                     W"
     gene            complement(3374..3628)
                     /locus_tag="VLI40_11300"
     CDS             complement(3374..3628)
                     /locus_tag="VLI40_11300"
                     /inference="COORDINATES: protein motif:HMM:NF023510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3565 domain-containing protein"
                     /protein_id="HSU97808.1"
                     /translation="MQRDACAGSAIPRRIIGFHQDEENHWVADLECGHTQHVRHDPPW
                     QVRTWVTTESGRATFLGKTLECVKCCDPREVQREVQRETK"
     gene            complement(3680..4762)
                     /locus_tag="VLI40_11305"
     CDS             complement(3680..4762)
                     /locus_tag="VLI40_11305"
                     /inference="COORDINATES: protein motif:HMM:NF019352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HSU97809.1"
                     /translation="MQHAEPTAREKQHISHHPEKIMTRTQILAALAVTGVLTAGVLGF
                     TDNAIRANKVQHIDFDKFVTSTNPSYDARLTEASDAGIKDYRIPIKNAVIEIADGVKY
                     DGWTFGGTVPGPVIHVRQGDRVRVNVVNESDMPHSIDFHAAQIAANVAYRMILPKDSV
                     AFEFVAREPGAFMVHCGTPPVTMHIMQGMYLPIIVDPRDGWGTKADKEFVIVQSEFYT
                     KPTADSGVVQADWDAERAKQASYVVFNGRAGQYKEHPLKVAVGDRVRFYVVNAGPNFD
                     SDFHLVGAIFDRVYPDGNPAHALEGVQTYPVPAGGGVVFEAVFNKDASGEGLYPFVTH
                     SFADAEKGAVGIVQVGTPKQFTTMSH"
     gene            4969..6261
                     /locus_tag="VLI40_11310"
     CDS             4969..6261
                     /locus_tag="VLI40_11310"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSU97810.1"
                     /translation="MSETGEAGSRERASRDGDIRAVPHGALLTRLERGDGSTRGPRDA
                     GKDFDPDTMARRSDEGPVRAVPRWIERLLRIPLPAKLVGANILLLVVAAVTALVVRHR
                     ELTTGPIITVVIVAYVVALLLNTGLVMLAVRPLRVLEKTVDTIWHGDLDARVPTSLLA
                     DRHVTRVARMFNILLDGLVADRARTRRLAAEIIDAGDRERAAISRELHDSAAQSLAAL
                     AMQLGVAIRAIDDDLPGVLRERIEGARTLANSTLEEIRMLAHTMHPRVLDDLGLTAAL
                     KRLARETTDHAALQVSSAHDGAVLVDVTVTGAVDEALSTPVKSVLYRVAQEAVRNARR
                     HAAPRHIEIHLEISAESVTLEVTDDGSGFDLARKLREGTGIGLFTMRERVALVGGELR
                     IVSRAGGGTSVIALIPLRESRSPSRSQSPSPSPVATQT"
     gene            6270..6917
                     /locus_tag="VLI40_11315"
     CDS             6270..6917
                     /locus_tag="VLI40_11315"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSU97811.1"
                     /translation="MIRVILADDHAVVRAGLKAVLGAAPDIDVIGEASNGIEAVQLAA
                     TLDPDVVVMDLTMDGMDGTAATREIVGKHLRARVLVLTMHAEEDYLIPVLEAGAAGYL
                     MKNAADRELVDAVRTVARGDMFIRPSAAKILAQGLTKKDPLGADRARFERLTDREQNV
                     LRLTAQGYSAPEIGERLFISPKTVDTYKQRIGDKLGLTHRAEYIAFALKLGLLTE"
     gene            complement(7167..>7352)
                     /locus_tag="VLI40_11320"
     CDS             complement(7167..>7352)
                     /locus_tag="VLI40_11320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97812.1"
                     /translation="DGTTERLPSTRITSLDGMDMEMHPRPVDVEVTRPMGESYSGKDS
                     QLDAAVATLLAQLDAKR"
BASE COUNT         1432 a         2221 c         2277 g         1422 t
ORIGIN      
        1 ccgagtttct cgtcgagcag gcggccggtc accttgggga agtagtagta gaaaccagcg
       61 aacaaaccca tcatcgttcc gccgaacagc acatagtgaa tgtgcgcgac gacgaaatag
      121 gtgtccgtct gctgcagatc ggtgggcgct gatgcgtgca tgacaccgga gattccgccg
      181 atcgtgaaca tggcgacgag tccgagcgcg aagagacagg cggtcgcgaa acggatcgac
      241 ccgccccaca ccgtcgccag ccagttgaag atcttgattc cagtcgggat cgcgatgagc
      301 atcgatgtga cactgaacgt cgcatcggcg atcggtccca ttcccacggc gaacatgtga
      361 tgcgcccaga caccgaacgc gaggaacccg atcagtatca acgaatacac catcgcggga
      421 tatccgaaca atggcttgcg cgcgaaagtt ggcagcactt cggagaccag gccgaacgcc
      481 ggcagaatca ggatgtacac ttccgggtga ccgaacaacc agaacagatg ctgccacagc
      541 aatgggtcgc caccggcggc aggttcgtag aattgtgtcc cgaagaatcg gtcgaacagc
      601 aggaatgtca gcgcgaccgt cagaacggga aacgaaacga ggatcagaaa ctgcgtgacg
      661 aatgccgacc atgtaaaaac cggtatccgc atcatgcgca tgccaggcgc acgcatgttg
      721 atgattgtcg tgatgaagtt gaaggacgcg gagagcgtcg ccagtcccag gatctgcaat
      781 ccgatcacat agaagtccat gttgagaccg ggattgtaca gccgcgtgct cagcggtgca
      841 tatccgaacc atccgccgtt tggtgcggcg ttccagagcc agctcgcgtt gatgaagatt
      901 ccaccgagca ggtagaccca gtagctgaac gcgttgagtc gcggaaaggc gacgtcgcgc
      961 gcaccgatct ggagagggac gaggatgttg aagaacgcag cgctcaacgg catcagagcc
     1021 atgaagatca tggtcgtgcc gtgcatcgtg aatatctggt tgtacagctc ggcggacacc
     1081 agtcggccgt ttggcccgaa cagctgtgcg cgaatcacca gcgcttctat cccgccgagc
     1141 aggaagaacg tgagcgaagt gtagaggtac agctggccaa ttcgcttgtg gtcggtggtg
     1201 gtgagccagc tccagacacc ggttttcggc ctacttactt cccgcggcgc acgctccacg
     1261 gacgtccgtg gaggagcgat caccgtcgtt gccatgcatc catcccgtgt gcgaaatggg
     1321 cagagctcga agtggcgatg cgacggccat ttcgatagtg cctccgacgc agtctatggt
     1381 gatgggcgga gggctggcgt gactcatgtc acgttcgcgg ggcgtttacc tcgggtattt
     1441 atctcccctg agcgcgggat cgcagctttg cgacgtcggg aattcgcagt cggcctcgcg
     1501 ggagtgattg cacgagcccc gtgcgcttga gctggcgcat cgcgcgcgag accgattctc
     1561 gcgcgctgcc aatttccatc gagagctctt cctgtgtgcg atcgagggtg atctcgatgc
     1621 cgagcggagt ggggagaccg ctcctttccg tgtatcccac gagcagcatc gccaatcgag
     1681 cggcgacgtc gtggaaggcc agcgtttccg tcacctgaac tagatgccgg aggcgcttgc
     1741 cgagcgcgcg aattaccccg tgggcgacgt ccggatgctc ccggtacatt gcctcgaagt
     1801 catcgcgcgc gagaaacatc aggcgggacg gttccagggt gatcgcggac gcgggatagg
     1861 gcccgccatc aaacagcggc agctcggcga cagggcggcc cggaccctcg atgtgcagga
     1921 tctgctcctt gccatcggga ctcgtgcgat agatccggac tcgcccggac tggatcatgt
     1981 agagaccgcg acaggcatcg cccgcggtaa aaagcacccg tccgacgccg aagtcgcgcg
     2041 tcacacaccg agccgcgagc tggtgaatcg tcgtgtcttc cagctccgcg aagatcggca
     2101 tctgcctgag caactcgaca attgctgccg aagacccctc cgccggtctc gccatggtca
     2161 tggtgcgccg atccgcagcg gtgaccagga cggagcatcg ctggccggga agctgtcgac
     2221 ggtactgtcg cggaatatct cacgggtgtc gcgcgcacga cgttgctcga tcgcgtcctc
     2281 gaacaacgca cgagttgcgt cgaaacgcgc ctcgccgacg tgcgtgagcg gcggtaccga
     2341 gacgattctg cgattccgga tcttcgccat cgcgattggc gtgcggagac gtgtgccgtc
     2401 ctgcagcatc atggtcggcg ttccgcggac gtgatattgc tcacgaccga tccggccttc
     2461 ctcggcgacg gcggcacggg cggccggact cgcgaaatca cgctcgaatt gcttgaagtc
     2521 gagatcggtc gcgcgtgcca gctccagcaa cacgctgcga tcgccgatgt tgcggctctc
     2581 gccgaagaat gcacgcctca ccgcgagatc gaggttcatg gcgatgctca tcccctgctg
     2641 ccgcgcggcc catacggctt cgaatgccgg aagggtggtg gttggccagt caggcgcggt
     2701 gtatgggacg aaagctgcgt ctggttcctg tatcgccgcg agccaccatt cctgctccag
     2761 aacgtcacgc ggcggcgctt cgtgattgag cagttccaac ggaaagaaac gcgtgtatgc
     2821 cagaacgcgg ccggtgtatt cgggctgaat gtggtgcaca cggacagcca tcacgtagca
     2881 ccagggacag tagtattcgg cccattccca cagttccgcg atcgatcgat cactcattgt
     2941 tagcgacctc cggtcactgc gcgagcagaa gtttgctcgc tcgcctccac atctgtagtg
     3001 gtgtgacaat cgtcacgttt acagatttgg ctgagtacga tacttcaatc tatcgatgga
     3061 aacgcacgac acaaacgcag acgacatctg gaacgcgctc cgtaccgtta tcgatccgga
     3121 aatcggactc gacatcgtaa cgctgggcct cgtatatgat gttgcatgcg gcaacgattc
     3181 cgcggtgcct ggcgagaccg tccgcatcac gcatacactc accacgcctg gatgcccgat
     3241 ggagcgtgta atcacttccg gcattcgagc tgcggtgggt cgggttcccg gcgtcgcggc
     3301 ggtggagacg aatctcgtgt gggaccccgt gtggcactcg gggatgatcg caccgggagc
     3361 gtggtgaggc tgcttattta gtttcgcgct gcacttctcg ctgcacttcg cgcgggtcgc
     3421 agcacttcac gcattcaagg gtcttgccca gaaaagtcgc gcggcccgat tcagtcgtga
     3481 cccaggtcct gacctgccac ggtggatcgt gccgcacgtg ttgtgtgtgc ccgcattcga
     3541 gatcggcgac ccagtggttc tcctcatcct gatggaatcc gattatccgc cttggaatcg
     3601 ccgaccccgc gcatgcatct cgctgcatta caaactcctt cgatgtcgcc ccgtgaggcc
     3661 tgatgcggcc tgatgctgcc tagtgcgaca ttgtggtgaa ctgctttggt gttccgacct
     3721 gcactattcc gaccgcgccc ttttcagcgt cggcgaaaga gtgggtcacg aagggataaa
     3781 gcccttcgcc acttgcgtcc ttgttgaata ccgcctcgaa tactacaccg ccgcctgccg
     3841 gcaccggata ggtctgaaca ccttccagag cgtgcgccgg atttccgtca ggatacacac
     3901 ggtcgaagat cgcgccgact agatggaagt cgctgtcgaa gttcggtcct gcgttcacta
     3961 cataaaagcg tactctgtcg ccgaccgcaa ccttgagcgg gtgttccttg tactgtcccg
     4021 cacgtccgtt gaagaccacg tagctcgcct gcttcgcgcg ctcggcgtcc cagtcagcct
     4081 gtacgacgcc gctatcggcg gtcggcttgg tgtagaactc gctctgcacg atgacgaatt
     4141 ccttgtcggc ctttgtaccc cagccatcgc gcggatcgac gatgatcggg agatacatgc
     4201 cctgcatgat gtgcatggtg accggcggtg tgccgcagtg gaccatgaac gctcccggtt
     4261 cgcgcgcgac gaactcgaac gctacggagt ccttcgggag aatcatccgg tacgcgacgt
     4321 tcgcggcgat ctgcgccgcg tgaaagtcga tcgagtgcgg catgtcggac tcgttgacga
     4381 cgttcacgcg aacccggtcg ccctgccgaa cgtgtatcac cggacctggg acggtaccgc
     4441 cgaatgtcca tccatcgtac ttcacgccgt ccgcgatctc gatcactgcg ttcttgatcg
     4501 gaatgcggta gtccttgatg ccggcgtcgg acgcttcggt cagccgcgca tcgtacgacg
     4561 ggttggtgct ggttacaaac ttgtcgaaat cgatatgttg aaccttgttc gcgcgaatcg
     4621 cgttgtcggt gaaccccagt acacctgcgg tgagtacacc agttacggct agcgcggcaa
     4681 gtatttgtgt gcgtgtcatg atcttctccg gatgatgcga gatgtgctgc ttctcgcgtg
     4741 cggttggctc cgcatgttgc atcaggaagc tagggttgca ggggtccgca atctgtcggg
     4801 cgaagctgga aatttgctgc gggaatcgcc tccggaccgg taaaggaatc ccttacccgg
     4861 agtggcccct gtaggggaat cccgtacata tttcgttgtg gctccctgac tttggagagt
     4921 cccggtcacg ggtagcttta attcatgagt gcggccgcga aacagacggt gtccgagaca
     4981 ggcgaggcag ggagtcggga gcgcgcgagc cgggatggcg atattcgcgc ggtcccgcat
     5041 ggcgcgctgc tcaccaggct cgagcgcggt gacggttcga cgcgaggacc gcgggacgcc
     5101 ggcaaggact tcgatccgga tacgatggcg cgccgcagcg atgaaggccc ggttcgcgcc
     5161 gtccctcgct ggatcgagcg cctgctgcgc attccacttc cggcaaagct ggttggcgcg
     5221 aacattcttc tgctcgtcgt tgccgcagtt acggcgctcg tcgtgcgcca tcgcgagctg
     5281 accaccggcc cgatcatcac ggtcgtaatc gtcgcgtacg tcgtcgcact gctcctgaac
     5341 acggggcttg tcatgctggc ggtgcggcca cttcgcgtac tggagaaaac ggtcgacacg
     5401 atctggcacg gtgatctcga cgcacgcgtc ccaacatcat tgctggccga cagacacgtt
     5461 acgcgtgtgg cgcggatgtt caacattcta ctcgacgggc tcgtcgctga ccgcgcacgc
     5521 acgcgtcgcc ttgccgccga gataatcgac gcgggcgaca gggagcgggc tgcgatctct
     5581 cgcgagctgc acgattctgc cgcccagtct ctcgcggcgc tggcaatgca actcggcgtt
     5641 gcaatcaggg ctatcgacga cgatttgcct ggcgtgctcc gggagcggat cgaaggagcc
     5701 cgaacgctcg ccaacagcac gctcgaggaa atacgcatgc tcgcacacac catgcacccg
     5761 cgcgtgctcg acgatctcgg tctcacggcg gcactgaagc gactggcacg cgagacgacg
     5821 gaccacgccg cgctgcaggt gagttcagcg cacgacggag cggtactggt cgacgtcaca
     5881 gtgaccggcg cggttgacga agcgctttca acaccggtca agtcggtgct gtaccgtgtc
     5941 gcacaggaag ctgtgcggaa tgcgcgtcgc cacgcggcac ccaggcacat cgaaattcat
     6001 ctggagatca gcgcggaatc cgtgacgctc gaggtcacgg acgacggcag cggttttgat
     6061 ctcgcaagga aactgcgtga agggacgggc atcgggctgt tcacgatgcg ggaacgtgtc
     6121 gcgctggtcg gcggcgagtt gcgaatcgtc agccgagctg gcggtggtac gtccgtaata
     6181 gcattgatac ctctgcgcga atcacgctcg ccgtcacgct cgcagtcacc ctcgccttct
     6241 cccgtagcca cacagacatg agcccagcca tgattcgcgt aattctcgcc gacgatcacg
     6301 ccgtggtgcg cgcaggactc aaggcggtcc tcggcgccgc acctgacatc gacgtgatcg
     6361 gcgaagcctc caacgggatc gaagctgtac agcttgccgc taccctggat ccggatgtcg
     6421 tggtcatgga tctgaccatg gatggcatgg atggcaccgc agcgacgcgt gagattgtgg
     6481 gcaaacacct ccgtgcgcgc gtactcgtcc tcacgatgca cgcggaggag gactatctga
     6541 ttccagtgct cgaggcagga gccgccggtt atctgatgaa aaacgccgcc gaccgcgagc
     6601 tcgtggatgc ggttcgaacg gtggcgcgcg gagacatgtt catacgcccg agcgcggcga
     6661 agattctcgc acaggggctg accaagaaag acccgctggg cgccgaccgc gcccgcttcg
     6721 agcgcctcac cgatcgcgag cagaatgttc tgcgccttac ggctcaggga tactctgcgc
     6781 cggagatcgg cgagcggctt ttcataagtc ccaagacggt tgacacgtac aagcaacgaa
     6841 tcggcgacaa gctcggactc acacaccgcg ccgagtacat cgcattcgcg ctgaagctcg
     6901 ggttactgac ggagtagacg ggctgtcggt cgtcatcccc gcgaaagctg gctcagagac
     6961 tcgtcattcc cgcgaaaggg agaagctgac gccgtcattc ccgcgaaagc gggaatccat
     7021 ctgctgccga tcaggtttgc ggtaccattg cactcaaaga tcgataacat ggattcccgc
     7081 gttcgcggga atgacgagtt ctaaagttcc cgcgttcgcg ggaatgacgg atctttcctg
     7141 gtccggcacc agttctaccc acacatctat cgcttcgcat ccagctgcgc caacagtgtc
     7201 gcgacagcgg catccagctg tgaatccttc cccgaatagc tctcacccat aggacgcgtg
     7261 acttcgacgt cgactggacg cggatgcatc tccatgtcca ttccgtcgag gcttgtgatt
     7321 cgcgtcgatg gcaaccgctc ggtcgtacca tc
//
LOCUS       DATIMD010000506         3170 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5119060, whole genome shotgun sequence.
ACCESSION   DATIMD010000506 DATIMD010000000
VERSION     DATIMD010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3170
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5119060"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1286)
                     /locus_tag="VLI40_11325"
     CDS             complement(<1..1286)
                     /locus_tag="VLI40_11325"
                     /inference="COORDINATES: protein motif:HMM:NF024181.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusD/RagB family nutrient-binding outer membrane
                     lipoprotein"
                     /protein_id="HSU97813.1"
                     /translation="MSIKNKLAAFAMLGAALGATACQGDFLTGGELSNDPNRPTVASN
                     DQLFVGTQETLWAYWGSDPARVTGVYAQQFTGLANQYGALGATYSQDATTTNGTHAAL
                     YTGGGLVDIVKLQKGTAAANDSVYLGIARIMEGALMGTGADLFGDLVYKEALAGKPNP
                     TLDDQLSVYDSVQTVLSAGITDLAATGPTNIGPGAADLVYGGDATKWTAMAHTLKARF
                     FMHTAEKNGTAAYQAALAQAKLGIASDAGNYFGAFTTANQPAEANFYYQFHGPAGRGG
                     DLGGGVFLDSLLKARHDPRDTTYFSHTKTGAVNWLSATRGAPDFQQPFVTFDENTLIW
                     AEAAYRTGDVATALVKLNQERANHGLPAEVVSGQALLNEILLEKYIADFQLGEEAWND
                     YKRTCTPNIAPPQPGLVVPGRMFYDSGEENTNTNVPA"
     gene            complement(1306..>3170)
                     /locus_tag="VLI40_11330"
     CDS             complement(1306..>3170)
                     /locus_tag="VLI40_11330"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSU97814.1"
                     /translation="NRSELGRSIGNVNADWVPLGWLTVKETLGADYYNDSRLEALPLT
                     SAGNVLGSVDRLDINNLTIDNNLIATAQHTFSDKLDATLTVGQNLNSRRFRQIFVDGQ
                     QLVAPAPLALQNTISQTANENKNLRHVQGYFTQAEVNLFQQLVLNVGVRNDGFSTFGA
                     SNRRANYPKASAAWTFTKLLGTEENSGWFNYGKIHFAYGETGKEPPVYGAVTALSTGG
                     FGLGGYGDVLKAGINGEGALSTSGTIGNPALRPERDRETEFGGDFAFFRSKADLTATY
                     YDKRSSDVILSTPVNAAQFGATNEILNGAALKNQGVELTLNLHPLQTRNVNWDIGVMY
                     GRNKGNVTSLNGAQFIDYNNEGFTGAIGSSTIGFAPGVIRGDDFARCGRGLTLAVPGI
                     AGGPQSIDALCGSAPKNALFLAPNGRPIVDPTDRVIADPNPKYTMSYNTSLRLWNKFT
                     LSGLLDVRKGGMVWDGTRGILDNFGTGVDTYIRNQQGVFGKNYQTDVFPVVAGPGVGV
                     VAFATPKDWQQWFQGNGGGFGPVGSQFMENGSFVKLREIGLTYTLDQRWVRSLSGFSS
                     ADIRVAGRNLKTWTKYRGFDPEANLGGAEFLTQGLDYFSNPQTRSFVVSISLNR"
BASE COUNT          567 a          958 c          985 g          660 t
ORIGIN      
        1 gcgggaacgt tggtgttggt gttttcctct ccggaatcgt agaacatgcg gccgggcacc
       61 acgaggcctg gctgcggcgg cgcgatgttc ggagtgcacg tgcgcttgta gtcgttccac
      121 gcttcctcac ccagctggaa gtcggctatg tacttctcga gaagtatctc attgagaagc
      181 gcctggcccg aaacgacttc ggcagggagc ccgtggttgg cacgctcctg gttgagcttc
      241 acgagcgcgg tggcaacgtc tcctgtgcga tacgctgcct cagcccatat gagcgtgttt
      301 tcgtcgaacg tgacgaacgg ctgctggaaa tccggcgcac cgcgagtcgc gctcaaccag
      361 ttgaccgcac cagtcttggt gtggctgaaa taggtcgtgt cacgcggatc atgtcgcgcc
      421 ttgaggagcg aatccagaaa cactccacca ccaagatcac cgccgcgacc cgccggtccg
      481 tgaaactggt aatagaagtt ggcttccgcc ggctggttgg cggtcgtgaa cgcgccgaag
      541 tagttgccgg cgtcgctcgc gatgcccagc ttcgcctgag cgagcgccgc ctggtacgcg
      601 gctgtcccgt tcttctctgc agtgtgcatg aagaaccgcg ccttgagcgt atgcgccatc
      661 gccgtccatt tggttgcatc gccgccgtac acgagatcag ccgcgccagg tccgatgttg
      721 gtcgggccgg tcgctgcaag atcggttata cctgcggaaa gaaccgtctg gacggaatca
      781 tacaccgaca gctgatcgtc cagcgtcggg tttggctttc cggcaagcgc ctccttgtag
      841 accaggtcgc cgaaaagatc ggcgcccgtg cccatcaaag cgccctccat gatgcgtgcg
      901 attccgagat acacggaatc gttcgcagcg gcggtgccct tctgcagctt cacgatgtcc
      961 acgagtccac cgccggtgta aagtgcggcg tgcgtaccgt tggtggtcgt ggcgtcctgg
     1021 ctgtatgtgg ccccgagcgc gccgtactgg ttggcaaggc cggtgaactg ctgcgcgtac
     1081 acacctgtca cgcgtgccgg atcgctgccc cagtaggccc acaatgtttc ctgcgttcca
     1141 acgaacagct gatcattcga cgcgaccgtg gggcgattgg gatcgttgct cagttccccg
     1201 cccgtcagaa agtcgccctg gcatgcagtc gcgccgagcg cggcgcccag catcgcgaac
     1261 gcggccagtt tgttttttat tgacactgat atctccttgg tcgcgttagc ggttgaggct
     1321 gatcgaaact acgaacgacc gcgtctgcgg attgctgaaa tagtcgagac cctgtgtcag
     1381 gaactctgca ccgccgaggt ttgcctcggg atcgaagccc ctgtacttgg tccaggtctt
     1441 gagattccgg ccagcgacac ggatgtcggc gctgctgaaa ccgctcagcg accgcaccca
     1501 acgctggtcc agcgtgtagg taagcccgat ctcacgcagc ttcacgaagc ttccattctc
     1561 catgaactgg gatccgacgg gaccaaagcc gccgccattg ccctggaacc attgctgcca
     1621 gtccttcggg gtagcgaatg cgacaacgcc gacgccgggg ccggcaacga ccggaaatac
     1681 gtcggtctga taattcttgc cgaacacgcc ttgctggttg cggatgtacg tgtcgacacc
     1741 cgtcccgaag ttgtcgagaa tgccgcgcgt tccgtcccat accatgccgc ccttgcgcac
     1801 atcgagcagg ccggacaggg tgaacttgtt ccagaggcgc agactggtgt tgtacgacat
     1861 cgtgtacttc ggattcggat cggcgatgac gcgatctgtc ggatcgacga tcggtctgcc
     1921 gttcggcgcg aggaacagcg cgttcttcgg cgccgatccg cacagcgcgt cgatgctctg
     1981 cggaccacca gcgatgcctg gcaccgccag cgtgagtccc cgaccgcagc gcgcgaagtc
     2041 gtcaccgcga attacacccg gcgcgaagcc gatggtcgat gagccgatcg ctccggtaaa
     2101 gccttcgttg ttgtagtcga tgaactgcgc accgttgagg ctggtcacgt tgcccttgtt
     2161 gcggccgtac atgacgccta tgtcccagtt cacattgcgc gtctggagcg ggtgcagatt
     2221 gagtgtgagc tcgacgccct gattcttgag tgcggcgccg ttgagaatct cattggtcgc
     2281 gccaaactgc gcggcgttga ccggagtcga aagaatgacg tcgctcgacc gcttgtcata
     2341 gtacgtcgcg gtcaggtcgg ccttggagcg gaagaaagca aagtctccgc cgaactcggt
     2401 ttcgcggtcg cgctccggac gaagcgccgg attgccgatc gttccgctgg tcgagagagc
     2461 tccctctcca ttgataccag ccttcaacac gtcaccgtat ccgccgagtc cgaaaccacc
     2521 ggtggatagc gccgtgacgg ctccgtacac gggcggctcc ttaccggttt cgccataggc
     2581 aaagtggatc ttgccgtagt tgaaccagcc ggagttctcc tcggtcccga gcagcttggt
     2641 gaacgtccag gcggccgatg ccttgggata gttcgcgcgg cgattcgatg caccgaaggt
     2701 ggagaaaccg tcgttacgca cgccgacgtt cagcacgagc tgctgaaaga gattgacctc
     2761 ggcctgtgtg aaatatccct gcacgtgacg caggttcttg ttctcgttcg ccgtctggct
     2821 gatcgtgttc tgcagggcga gcggggctgg tgccacgagc tgctgtccat cgacgaagat
     2881 ctgacggaag cggcgtgagt tgagattctg ccccaccgtc agcgttgcat cgagcttgtc
     2941 gctgaaggtg tgctgcgccg tggcgatgag gttgttgtcg atcgtcaggt tgttgatgtc
     3001 gagccgatcc accgagccaa gcacgttgcc ggccgacgtc agcggaagtg cttcgagtcg
     3061 tgaatcattg taatagtcgg cgccaagggt ctccttgaca gtcaaccagc cgagcggaac
     3121 ccagtcggcg ttgacgttcc cgatggagcg gccgagctcg ctgcgattcc
//
LOCUS       DATIMD010000507         5506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4830426, whole genome shotgun sequence.
ACCESSION   DATIMD010000507 DATIMD010000000
VERSION     DATIMD010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5506
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4830426"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(171..770)
                     /locus_tag="VLI40_11335"
     CDS             complement(171..770)
                     /locus_tag="VLI40_11335"
                     /inference="COORDINATES: protein motif:HMM:NF024769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HSU97815.1"
                     /translation="MARAPNKVASQTEIPIVPFADQTAWNKWLDKHHADSPGIWIHFA
                     KKGSGIPSVSYPEALDVALCYGWIDSQKKGHDEKTFLQKFTPRGARSIWSAINRDKAL
                     ALIDSGRMMPAGLIQVERAKSDGRWNAAYASPAKIEVPDDLQAALDAKPRAAKFFATL
                     TSQNRYAILFRIHNAKRAETRAKKIAEFVAMLGRHETIY"
     gene            complement(789..1547)
                     /locus_tag="VLI40_11340"
     CDS             complement(789..1547)
                     /locus_tag="VLI40_11340"
                     /inference="COORDINATES: protein motif:HMM:NF033196.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSU97816.1"
                     /translation="MTRFRVLAFAALASIAIPVLSAGAQNQGPPPPPKNLKFFPKDIS
                     RQALLDTMGTFTRALGVGCAFCHMVDDSIPRERRDFSLDVKPNKDKARTMLRMVTAIN
                     ADYLTKLSSRLEPPVVVTCATCHRGVTEPRPLEQVILTRYDSAGTDSAIALYRDLRQH
                     YYGRASYDFGEAPLAAVGGALRQRDKVADALKFYMLNLEYAPNSASAWSQAGGAQLAS
                     GDTATAIKSFEKALSIDPKDRGATRAMQALKPKP"
     gene            complement(1607..2095)
                     /locus_tag="VLI40_11345"
     CDS             complement(1607..2095)
                     /locus_tag="VLI40_11345"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSU97817.1"
                     /translation="MSHDEYRIRPYAPSDRSACLALFDSNTPDFFAPHERKEFAGFLD
                     SSSATMLVLETSGGELIGCGGYYIRAESTDGGLAWGMIARRWHRRGAGRTLLRSRLRA
                     LKTAGARSVTVHTSQHSRGFFEREGFEEVRVVIDGFAPGIDMVELRLRTILRNGTVSR
                     MF"
     gene            2238..3914
                     /locus_tag="VLI40_11350"
     CDS             2238..3914
                     /locus_tag="VLI40_11350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97818.1"
                     /translation="MSSPLVSPRGVVDAQSTAGLRFDVSFPASVSPDKQDGHIILIVS
                     RDSSREPRFQYQVYNPDVQPAFGLDVDGLAPGATAVIDSKVFGWPLKSVMDIPPGDYR
                     VQAVLNRYETFHRADGHTVKLAPDKGEGQHWFSKPGNFYSEPMRVHLDPASGQTVHIS
                     MSKVIAPIPEPKDTKWVKYVRIKSDLLSKFWGRPMYLGAYVLLPAGFDDHPSAHYPLA
                     VDQGHYPTGFGEFSPNPPTPGSRDSVRVSYAYDLYRQWTGPKFPRMLVMKIQHANPYY
                     DDSYAVNSANLGPYGDAIVKELIPYVEKKFRGIGQGWARTLYGGSTGGWESLGDQVFY
                     PDDFNGAWAFCPDPVDFRQYETINIYSDTSAFVFTADWKKTPQPSGRNYLGHLLTTVE
                     NDNHWEYVQGQKDRSTEQWDIWESVFGPVGADGYPQRIYDKLTGHIDPKVAAYWKEHY
                     DLRNILQRDWATLGPRLVGKIHIYSGTMDSWHLNNAVYLMQDFLDSTKDPYYAGSIEY
                     GDRYEHCWTGDSQHSLQVGSMTVDQRFIPVMAQHIVKTAPAGADTVSWRY"
     gene            complement(3898..4725)
                     /locus_tag="VLI40_11355"
     CDS             complement(3898..4725)
                     /locus_tag="VLI40_11355"
                     /inference="COORDINATES: protein motif:HMM:NF025091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HSU97819.1"
                     /translation="MKTQAEKGRLFRDLHYRDSAFVIPNPWDIGSARILAGTGFEALA
                     TTSVGYANSIGRQDHGVTRNEMIAHAATLAAATELPVSADLENGFGDDPETVAETIRM
                     AAGAGLAGCSIEDSTNRDDDPIYSFEHSVDRIRAAVEQVRNLPFPFMLTARSENYLHG
                     RKDLADTIKRLQAFQEAGADVLYAPGMTDVKEIATLISSVDRPVNVLAGMQGTHFDVN
                     ELSRIGAKRISVGGALTRIAFAAVLHAAREMKERGTFTFIDEPITSREIAALISSAS"
     gene            complement(4762..5172)
                     /locus_tag="VLI40_11360"
     CDS             complement(4762..5172)
                     /locus_tag="VLI40_11360"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSU97820.1"
                     /translation="MAQEAGPSRDDVVRWADTLYSEHVDHKDADGFAAVFTQDGTLRF
                     GNSDTLVGRDAIRGAIAQFFAAFKSLRHHSGRTWMDGDIVVLEAVVTYIRHDGQEVTV
                     PAVTIFHLVPTNISSAPLADECRIYVDLTPLFAP"
     gene            complement(5240..>5506)
                     /locus_tag="VLI40_11365"
     CDS             complement(5240..>5506)
                     /locus_tag="VLI40_11365"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSU97821.1"
                     /translation="RKFLEYLSPYNNVRANVKYPEPLIWTTTKDDRVGPQHARKFAAK
                     LASMNIPYMFYEVIEGGHGSGASLKERAHTTALEMTYFTRKLMQ"
BASE COUNT         1138 a         1693 c         1570 g         1105 t
ORIGIN      
        1 gcgtctgtac gagcaactgg caatgccgca ttcagcgaac agttctccca atgcacgctc
       61 gtgacccccg cccgccaccc gagccgagcc acctcggcgc gctggcagga cgtgctcgcc
      121 aatgccgaac agcaactcat ctgcaagcga gccctgatcg actacccgca tcaataaatc
      181 gtctcgtgcc gtccgagcat cgctacgaac tcggcgattt tcttcgcacg agtttccgca
      241 cgcttcgcat tgtgaatgcg aaacaggatc gcatagcgat tctgactggt cagtgtcgcg
      301 aagaattttg ctgcgcgcgg ctttgcatcc agcgcggcct gtagatcgtc cggaacttcg
      361 atcttcgccg gcgaggcgta cgccgcattc catctgccgt cactcttcgc acgctcgacc
      421 tgtatgaggc cagccggcat cattcggccg ctatcgatga gcgcaagcgc cttgtcccga
      481 ttgatcgcgg accagatact gcgcgcgccc cgcggcgtga acttctgaag gaaagtcttc
      541 tcgtcgtgtc ccttcttctg gctgtctatc cagccgtagc acagtgcgac gtccagagct
      601 tcgggatatg acaccgacgg gatgccggat cccttctttg cgaagtgaat ccagatcccc
      661 ggtgagtctg catgatgctt gtcgagccac ttgttccacg cggtctggtc cgcgaatggc
      721 acgatcggaa tttcagtctg tgatgcgacc ttgttcggcg ctcgtgccat tcaatgcgtt
      781 acccgatctt acggcttggg cttgagagcc tgcatcgcgc gagttgcccc tctgtccttt
      841 ggatcgatcg atagcgcctt ctcgaagctc ttgattgctg ttgcagtatc gcccgacgcg
      901 agctgtgcac cgccagcctg cgaccacgcc gacgcagagt tcggtgcata ctccagattc
      961 agcatgtaga acttgagcgc gtctgccacc ttgtcgcgct gacgcaacgc gccgccaacc
     1021 gcggccagcg gggcctcgcc gaaatcgtac gatgcgcgcc cgtaataatg ctgtctcaga
     1081 tcgcgataca gcgcgatggc ggaatcggtg cctgccgaat cgtagcgtgt aagaatcacc
     1141 tgctcgagcg gacgaggctc cgtcacacca cggtgacacg tggcgcacgt gaccacgacg
     1201 ggcggctcca gcctggatga gagcttggtc aggtaatcag cattgatcgc agtgaccatg
     1261 cggagcatcg tgcgggcctt gtccttgttc ggcttcacat ccaacgagaa gtcgcgccgc
     1321 tcgcgtggga tgctatcgtc gaccatgtga cagaacgcac agcccacacc gagagctcgc
     1381 gtgaacgtac ccatcgtatc gagcagcgcc tgccgagaga tatccttggg gaagaacttg
     1441 aggttcttgg ggggcggtgg cggcccctgg ttctgcgcac cggcagaaag tacaggaatc
     1501 gcaatggaag cgagagcagc aaatgcaaga acgcgaaaac gtgtcatggt tggtcccaga
     1561 agttgagcgc cacagtcaat gccgtaggcg cagtctccac cgccttctaa aacatgcggg
     1621 aaacggtgcc gtttcgtaag atcgtccgga gccgcaattc gaccatgtcg atcccgggtg
     1681 cgaagccatc gattaccacc cgtacctcct cgaaaccttc gcgctcgaag aagccgcgac
     1741 tgtgttgact cgtgtgaacg gtcacagacc gggcgccggc ggtcttgagt gcacgtagac
     1801 ggctgcgtag aagtgtgcga ccggcgccgc gccggtgcca acgccgcgcg atcatgcccc
     1861 acgccagacc gccatccgtg ctctcggcgc ggatatagta gcccccgcaa ccaatcagct
     1921 ccccgccgga tgtctccagc acgagcatgg tcgcactgga gctgtccagg aagccagcga
     1981 actccttgcg ttcatgaggg gcaaagaagt cgggcgtatt gctgtcgaac agtgcaaggc
     2041 acgcggagcg atctgacggt gcatatggcc gaatgcgata ttcatcgtgc gacatgtcag
     2101 aaacttgacg ccgtaaatcc tgaagtctag cttcgcgtca cgaaggagga gtttacatgc
     2161 tctctgggcc gctcgtagac gcgcgtaata cccggtgttc cgtaaccggt gtgattgctt
     2221 ccctgttact tggtgccatg agcagtccgc tggtcagccc gcgtggcgtg gtggatgcgc
     2281 aatccaccgc cggactgcgg ttcgatgtct cgtttcctgc atccgtatca ccggacaaac
     2341 aggacggcca catcattctg atcgtatccc gtgatagcag tcgcgagccg cgcttccagt
     2401 atcaggtgta caatccggac gtgcagccgg cattcggtct cgacgtcgac gggctggcgc
     2461 ccggagcgac cgctgtcata gactcgaaag ttttcggatg gccgctaaaa agcgtgatgg
     2521 acattccgcc gggcgattat cgagtgcagg ccgtgctcaa tcgctacgaa acgttccacc
     2581 gcgctgacgg acacaccgtc aagctcgcgc ccgacaaggg cgagggacag cactggttca
     2641 gcaagccggg caatttctac agcgagccga tgcgtgttca tctcgacccc gcgtcgggac
     2701 agacggttca catcagcatg agcaaggtga tcgcgccgat ccccgaaccg aaagacacga
     2761 agtgggtgaa gtacgtgcgg atcaagagcg acctgctgtc gaagttctgg ggccgtccga
     2821 tgtaccttgg cgcatacgtt ctgcttcccg caggcttcga cgatcatccg tcggcgcact
     2881 atccgctcgc tgtcgatcag gggcactatc caaccggctt cggcgaattc agcccgaatc
     2941 ctccgacacc gggctcacgc gacagcgtgc gcgtctcgta cgcatacgac ctgtacaggc
     3001 aatggaccgg cccgaaattc ccacgcatgc tcgtcatgaa gatccagcat gcgaatccgt
     3061 attacgatga ttcgtacgcg gtcaattccg cgaacctcgg tccgtacggc gacgcgatcg
     3121 taaaggaact gattccctac gtcgagaaga aatttcgcgg gatcggacag ggatgggcac
     3181 gaacgttgta cggcggatcc accggcggat gggaatcact cggcgaccag gtgttctatc
     3241 cggacgactt caacggtgca tgggccttct gtcctgatcc cgtcgacttc cgccagtacg
     3301 aaacgatcaa catatacagc gacaccagcg ccttcgtttt caccgccgac tggaagaaga
     3361 caccgcagcc gtcaggccgc aactatctcg gtcatctgct cacgactgtc gagaatgaca
     3421 atcactggga atacgtgcag ggccagaagg atcgctcgac cgagcagtgg gacatatggg
     3481 aatccgtgtt cggaccagtt ggagcggacg gatatccgca acgcatttac gacaagctca
     3541 ccggtcacat cgatccgaaa gtcgcggcgt actggaagga gcattacgac ctccgcaaca
     3601 ttctccagcg cgactgggcc acgctcggtc cccggctcgt cggaaagatt cacatctact
     3661 ccggcaccat ggacagctgg cacctgaaca acgccgtgta tctgatgcag gactttctcg
     3721 atagcacgaa ggatccgtac tacgctggat caatcgagta tggtgatcgt tacgagcatt
     3781 gctggaccgg agactcgcaa cattcactac aggtaggcag catgactgtc gatcagcgtt
     3841 tcattcccgt gatggcgcag cacatcgtga agacggcgcc agccggagcg gacaccgtca
     3901 gctggcgcta ctgatcagag cggcgatctc tcgtgacgtg atcggctcgt cgatgaaggt
     3961 gaacgtcccg cgctccttca tctcccgagc cgcatgcaga accgctgcaa acgcgatacg
     4021 cgtaagtgcg ccacccacgc tgatgcgctt cgcaccgatt cgcgagagct cgttgacgtc
     4081 aaagtgcgtg ccctgcattc cggccaggac gttgactggc cggtccacgg agcttatcaa
     4141 cgtcgcaatc tccttcacgt ccgtcatacc cggagcatac agaacgtcgg cgccagcctc
     4201 ctgaaaggct tgcaggcgct tgatggtgtc agccagatcc ttgcgaccgt gaagatagtt
     4261 ctccgaccgc gcggtcaaca tgaatggaaa cggtaggttg cgcacctgct ccaccgctgc
     4321 gcgaatacga tcgaccgaat gctcgaacga gtagatcgga tcgtcatccc ggttggtgct
     4381 gtcctcgatc gaacagcccg ccaggcccgc ccccgcagcc atgcgaatcg tctcggctac
     4441 tgtctcggga tcatcaccaa agccgttctc gagatcggcg ctcaccggca attccgtcgc
     4501 ggctgccagc gttgccgcgt gcgcgatcat ctcattgcgt gtaactccgt ggtcctggcg
     4561 accaatcgag ttcgcgtacc ccacgctcgt ggtcgccagt gcctcgaacc ccgtgcctgc
     4621 gagaattcgc gcggagccga tgtcccacgg atttggaatg acgaaggcgc tgtcgcgata
     4681 atgcaaatcg cggaatagcc gacctttctc tgcctgcgtt ttcatcgcaa caactctctg
     4741 ttcaggaaac gactgtgctg atcacggcgc gaacaatgga gtgagatcga cgtagatgcg
     4801 gcactcatcc gcaagcggcg ctgacgaaat attggtcggt accagatgaa agatcgtcac
     4861 cgccggcacc gttacttcct gtccgtcgtg tctgatgtag gtaacgacag cttcgagaac
     4921 gacgatgtca ccatccatcc aggtgcgtcc ggagtgatgc cgcagtgact tgaacgcagc
     4981 aaagaattgt gcgatggcac cccggatcgc gtcacgcccg accagcgtgt ccgagttgcc
     5041 gaagcgaagt gtaccatcct gagtgaacac ggcggcgaag ccgtccgcat ccttgtgatc
     5101 gacgtgctcc gaatagagcg tatcagccca gcgaaccacg tcgtcacgac tgggtcctgc
     5161 ttcctgcgcc aagatggatc tcccgttaaa tgatgaccgt ccaaagatac accaatcact
     5221 gcgcgtttca ctgcgcccat cactgcatca gcttgcgcgt gaagtaggtc atctccagcg
     5281 ccgtcgtgtg tgcgcgctcc ttgaggctcg cacccgagcc atggccacct tcgatcactt
     5341 catagaacat gtacggaatg ttcatcgacg cgagctttgc ggcgaatttc cgtgcgtgct
     5401 gcggaccgac acgatcatcc ttggtcgtcg tccatatcag cggctccgga tatttcacgt
     5461 tcgcgcgaac gttgttgtac ggcgacaggt attcgagaaa tttgcg
//
LOCUS       DATIMD010000508         1866 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5119749, whole genome shotgun sequence.
ACCESSION   DATIMD010000508 DATIMD010000000
VERSION     DATIMD010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5119749"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VLI40_11370"
     CDS             complement(<1..239)
                     /locus_tag="VLI40_11370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018052162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HSU97822.1"
                     /translation="MNQQVETEPLAGLNPAQREAVLHFEGPMLVLAGAGSGKTRVLTM
                     RIARLVEHHGVDPSRILAVTFTNKAAGEMRERISR"
     gene            complement(223..1380)
                     /locus_tag="VLI40_11375"
     CDS             complement(223..1380)
                     /locus_tag="VLI40_11375"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSU97823.1"
                     /translation="MRRSAPLWAVVFGVVALLTWYVFYMRSVVTDLRAEASRVGKMYA
                     RVYDALSDPNTDPTTALQDLSALMRESGVPIIVTDARGAVTASANLPNEILGSNARIA
                     QYARELARENKPVVEPGVGTVYFGNTRLVEGLRIIPALQALLIAMFLTAGIYALRTRG
                     RADREQIWAGMARESAHQLGTPLSSMSGWIELLRDHDSGDPVVSHALAHMDGDLERLR
                     RVAFRFERIGRPPRREKVDVGDVVERVATYFRARVPTLAKAVTIRSVRRGESLVVDGD
                     PVLLEWAIESLAKNAIDALAGRGGRVTLSVQELPEGRVRIRVKDNGPGVPRELRKRIF
                     EAGFSTKEKGWGIGLSLARRIVTEGHDGRLLLQSGTRGATFDIILEHESTS"
     gene            complement(1384..>1866)
                     /locus_tag="VLI40_11380"
     CDS             complement(1384..>1866)
                     /locus_tag="VLI40_11380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl--tRNA ligase-related protein"
                     /protein_id="HSU97824.1"
                     /translation="EAGAHGKDTRGLLRVHQFDKVELVRYAHPDRSLEEHEMITAHAE
                     RILQLLELPYRVLLLAAGDTGFASAKTYDLEAFAPGVGKWLEVSSSSNFTDFQGRRAN
                     IRFRPTGGGKPRFVHTLNASGLAFPRIIAAILEHHQNADGTVRVPAALEPYFGASVIK
                     "
BASE COUNT          343 a          634 c          541 g          348 t
ORIGIN      
        1 aaccgggaga tccgctcgcg catctcgccc gcggctttgt tcgtgaaggt cacggcgagg
       61 atacgcgacg gatcaactcc atggtgctcg acgagccgcg caatgcgcat cgtgagcacc
      121 cgcgtctttc cggagcctgc gccggcaagc acgagcatcg gcccttcaaa atgcagtaca
      181 gcttctcgct gtgccgggtt cagccccgcg agaggctcgg tctcaacttg ttgattcatg
      241 ttccagaatt atgtcaaacg tcgcgccacg tgtgccggat tgcagcagta gccgaccgtc
      301 atggccttcg gtaacgatgc gccgcgcgag ggagagtccg attccccacc ctttttcctt
      361 ggtggagaat cccgcctcga agattcgctt gcgcagctcg cgcggaacgc cgggtccgtt
      421 gtccttcaca cggatgcgca cccttccctc aggcagttcc tgtactgata gtgtaacacg
      481 tccgccacgt ccagcgagcg cgtcgatggc attcttggca agtgattcga tcgcccattc
      541 gagcagaacc ggatctccgt ccaccacgag cgactcacca cgtcgtactg atcttatggt
      601 aacagccttt gcgagcgttg gcacgcgtgc gcgaaagtat gtcgcgacgc gctccaccac
      661 gtctccgacg tccaccttct cgcgacgcgg cggccggccg attcgctcga agcgaaatgc
      721 gacgcgtcgc aaccgctcga ggtcgccatc catgtgcgca agcgcatgac tcaccacggg
      781 atcgccggag tcgtgatcgc gcagcagctc gatccatccg ctcatgctcg agagcggcgt
      841 gccgagctgg tgcgccgact ctcgcgccat ccccgcccat atctgctcgc gatccgctcg
      901 gcctcgcgtt cgcaacgcgt agatgccagc cgtaaggaac attgctatga gcagcgcctg
      961 cagtgccgga atgatgcgga gtccttcgac cagtcgcgtg ttgccgaagt acacggtccc
     1021 gactcccggc tcgaccaccg gcttgttttc acgcgccagc tcccgcgcat actgcgcgat
     1081 ccgcgcgtta ctgcccagta tctcgttcgg cagattcgcc gacgccgtga cagcgccgcg
     1141 tgcgtcggta acaattattg gtacaccaga ctcgcgcatc agagccgaga gatcctgcag
     1201 cgccgtggtc ggatccgtgt tgggatcgct cagagcatcg tacacccgcg cgtacatctt
     1261 gcccacacgc gaagcctccg cgcgcaggtc cgtcaccacg cttcgcatgt agaatacgta
     1321 ccacgtgagc agcgcaacca cgccgaatac gactgcccag agcggcgcgg agcggcgcac
     1381 gctctacttg atcaccgacg cgccaaagta cggttcgagc gccgcgggca cacgaaccgt
     1441 tccgtccgcg ttctgatggt gctcgagaat ggccgcgatg atgcgcggaa acgccaaccc
     1501 tgacgcgttg agcgtgtgaa cgaaccgcgg cttgccgccg ccggtgggac ggaagcgaat
     1561 attggcgcgc cggccctgaa agtccgtaaa gttgctcgac gacgaaacct cgagccactt
     1621 cccgacgcca ggtgcgaatg cctcgagatc gtacgtcttg gcgctcgcga aacccgtgtc
     1681 gcccgctgcg agcagcagca ccctgtatgg cagctccagc agctgcagaa tccgctcagc
     1741 gtgcgccgtt atcatctcgt gctcttcaag cgacctgtct ggatgagcat accggaccag
     1801 ctcgaccttg tcgaactgat gtacacgcag caggccgcgc gtatccttgc catgcgcgcc
     1861 ggcctc
//
LOCUS       DATIMD010000509         7371 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2804820, whole genome shotgun sequence.
ACCESSION   DATIMD010000509 DATIMD010000000
VERSION     DATIMD010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7371
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2804820"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..232
                     /locus_tag="VLI40_11385"
     CDS             <1..232
                     /locus_tag="VLI40_11385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97825.1"
                     /translation="ISAWELRRKNVQAGGTPFRIPGGAAVPFLAVAVIVWILSNATMK
                     EFSVIGGVLVVASGLFLVARTGAGSQAAPADL"
     gene            391..3996
                     /locus_tag="VLI40_11390"
     CDS             391..3996
                     /locus_tag="VLI40_11390"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HSU97826.1"
                     /translation="MLALTAALLLQPARLLAQVGSTTDVIVGRVVGPDTMPLRGAHID
                     VTSLESGITRNRATGDDGRFSIVFPDGGGQYVVTVHYLGMAPVRTLVRRQADEDRLVA
                     DFRLVPSAVRLSAVNVEAQRAADSLAAGAGAIGEVLSRELLDRLGYQGNEAAALALIT
                     PGVTLLAGADSSMSALSIGGQAPSQTGHLVDGMQAGSASLPREAVKSTSVITSAYDVS
                     NGQYTGGFFEQTTVSGTNMVKGTLTSATPLAPVGDLPASMGYLSQRRTGFDGGGNISG
                     PFRKDHLFGAFAAHAGHTSLPGASVYTLNPATLGRLGLSPDSLGRFLQILNTQGIATP
                     TGDLAARRAFGNRQLFGRIDFTPSEKHTLTLSGNEFKYWNSGAFNGPLSTPLAAASYS
                     TEAWRGLLSLTSHLGAWVNDARVSASQGSTGVTALFPAASGRVVIPSAQPEGAETSGI
                     ATLSFGGNNFASQVTTSRNIDAKDELSWLSDDGAHRVKLGAGMTFARNTGGVPGNRYG
                     TYTFNSLSDLQNGVPTSFSRTLAPTDRASASADAALYVGDAWRTGPKLQLVYGLRLEH
                     TSFADAPRLNADAATAFSIHTNAFPQETRLSPRLGFTYFYGATDKKPASVTIRGGIGL
                     FRGGASQVSSVFAAARDATGLADSQAQLTCVGAAVPPLDWNYFQSATADLPLECAGGL
                     PGTTTSALPNIIAIDPSFQVPRTLRASLNISRQFAKVWNVSLDGSFSNGYAGIASRDV
                     NLLARPQFLLADEGNRPVYVNPGAIIASTGAIALRDSRVAPEFGTVSVISSPLRNDYR
                     SISLSLGRMLPSLSINGSYTRSFARMQMVGTSTPGALFGNGASTGGDPRVAEWVQNPY
                     APPHQLRLVMSYRPTKWMELTPSVFAQSGYTFDALVSGDINGDGSNNDRAFVFDPAKT
                     ADTAIANGMRRLLAAAPARIRDCLDADLGKVASAGTCRTPWFVIGGMSFKVTPPWNGG
                     RLSLSLQTNNLGGGLDLLLHGESHLHGWGSFPATDQTLLYVRGFDAASQSFKYAVNER
                     FGVPTANHTYYRQPMQMTLVAQMALGRMQGGGMGGMPPMDAPAHAGVASGATGATHAD
                     TLRSKIAATMPNVFRRALALNDSLKLALDTAQMARIKVLGDAYQSRADSLTSAIVAIM
                     SAPVAGADPTALATRVRAKSDEANVLVTNAIADLRKVLRPEQVEKLPDSVTKSVK"
     gene            complement(4039..5673)
                     /locus_tag="VLI40_11395"
     CDS             complement(4039..5673)
                     /locus_tag="VLI40_11395"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HSU97827.1"
                     /translation="MLQSVLIVGAGPTGLSMAAELARHGVQCRVIDKALAPSDRSRAI
                     VLQARTLEVLSLMQLADDFVAAGHSVHAGNIYSNGKRILHIRFDDLDSAYPYILLLAQ
                     PETERILGDRLRQLGVAVERGVELLSLSQDAEKATVELRHLNGRTERSRVDWVVGCDG
                     PHSTVRRALDMPFEGHTFEQVFVLADVHVESRFSDSEAHIFSEHGDICAIFPLGNGRY
                     RVIADNPPANPRGRDLTLEECQQMVNARMHERVTLSDPEWIASFRVNSRMVKELRSRR
                     VFLAGDAAHIHSPAGGQGMNTGIQDAVNLAWKLALVCSGRSDPSLLDSYQSERYPVER
                     SVLRQTDVMFRVAGASSGLGAFIRQHVAPLLGSLNFVQHGAARMVSEIDIEYEHSSIV
                     EDHHIVRGPRAGDRAPDAVARLAPDGATIHILDVCSRPQHTLLMVVDSAADVALAEDV
                     SRKIVASYGDVITPVVVSDANQPHDGARVPPMTRSNTRLPRSLRDEYGSVRPAMYLVR
                     PDGYIGFRAPLKASIDDLTKYLTRLMPHRPEESRVR"
     gene            complement(5761..>7371)
                     /locus_tag="VLI40_11400"
     CDS             complement(5761..>7371)
                     /locus_tag="VLI40_11400"
                     /inference="COORDINATES: protein motif:HMM:TIGR00831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HSU97828.1"
                     /translation="LARRWSVPYPSLLVIGGLALAFVPGLPRIDSDPELLFLIFVPPL
                     LYWTSLTTSIRELKDVIGPVARLATVLVLLTMAIVAVVAHLLSSEFSWASAFLLGAIV
                     APPDPIAATAVVVPLGVSRRITAVLEGEGLLNDATSLVAYRVALTAAVTGAFSAASAS
                     FHLLTAGVAGAAIGLVVGWLIALFRQTVTGRLPVVENTLSLLSPFLAFVPADAIGASG
                     VIAVVTLGLYLGRQDPKSMAPASRVQAEAMWTMLTFLFQSLIFILIGLELPYIMRGLK
                     DHSIPTLLIYASIITLACMLVRFAWVGISVAILRAVRRRKHEKIEPAWNEGALVAWAG
                     MRGGDSLVIALAIPFYAHSGAPVPARNLIIFITFFVIFVTLVGQGMTLSPVVRLLGLH
                     RDTSGKREEITARVEQAKAALGVIDDMIAHGGIDARIAKRLRARYADREKRWVARSEG
                     RSDDATSEEREAADEMAGVSDAVTRVNERIIGAQRESLLRLRESETINDDILRQLQRE
                     LDLETMLQESKNLDDKEAGAWSPYGADV"
BASE COUNT         1374 a         2169 c         2423 g         1405 t
ORIGIN      
        1 catctccgcg tgggagttgc ggagaaagaa tgttcaggca ggagggacac cgttcaggat
       61 tccgggcggg gccgcggtgc cgtttctggc tgttgccgtt atcgtctgga tattgagcaa
      121 cgcgacaatg aaggagtttt cggtcatcgg cggagtgctg gtggtggcgt cggggttgtt
      181 tctcgtggcg cgtacgggag cggggtcgca ggcggcgcca gcggaccttt aggagaccga
      241 cgcagcgcga cctcccgtgg gatcgagctc accctggcgc cactcaacct ttttggcatc
      301 ttccggcatc caagtgatat aactcaagct gacgggtagc ctatggctgg ctggtgcgcg
      361 tcgaattgga gggtcctgag gatcactggg ttgctggcgc tcacagctgc tctgctactt
      421 caacccgctc ggcttctggc gcaggtcggg agcactaccg acgtaattgt gggacgcgtg
      481 gtgggaccgg acaccatgcc gcttcgcggt gctcacatcg atgtgacgtc gctcgagtca
      541 gggatcacgc gtaacagggc tacgggcgac gacggccgct tcagtatcgt gtttcccgat
      601 ggcggcgggc agtacgtcgt gacggttcat tacctcggaa tggcgccggt ccggactctt
      661 gtcaggcgtc aggctgacga ggacaggctg gttgcggact ttcggctggt gccgtcggcg
      721 gtacgtctgt cggcggtcaa tgtggaagcg cagcgtgcgg cggattcgct cgcagctggc
      781 gcgggcgcaa ttggcgaggt gctgagccga gagctgctgg accgtcttgg atatcagggg
      841 aacgaggcgg cggcgctcgc actcataacg cctggcgtga cattgctcgc gggggcggac
      901 agctcgatgt cggcgctgtc cattggagga caggcaccat cccagacagg tcatctggta
      961 gatggcatgc aggcgggatc tgcttcactc ccgcgtgaag ctgtgaagag caccagcgtg
     1021 atcacgagtg cgtacgacgt gagcaacggc cagtacaccg gtggcttctt cgagcagacg
     1081 acggtgagtg gcaccaacat ggtcaagggg acgctcacct ctgcgacacc gctcgcaccg
     1141 gtcggagatc tgccggcgag catgggatat ctgagccagc ggcggactgg cttcgatggc
     1201 ggcggcaaca tctccggccc gttcaggaag gatcatcttt tcggtgcctt cgctgcgcac
     1261 gccggtcaca cttcactacc tggcgcgtcg gtgtacacgc tgaatccggc gacactcggg
     1321 cggctcggac tgtcgccaga ttcgctcggg cgctttctgc agattctcaa cactcaggga
     1381 atcgcgacac ctacgggcga tctcgctgcc agacgggcct ttggtaaccg ccagttattc
     1441 gggcgcatag acttcacgcc gagcgagaaa cacacgctca cgttgagcgg caacgagttc
     1501 aaatactgga atagcggtgc gttcaacggt ccgctctcga ctccactggc agcagccagc
     1561 tattcgacgg aggcctggcg cggcttgcta tcgctcacct cgcaccttgg cgcgtgggta
     1621 aacgatgcac gcgtgagtgc atcgcaggga agcaccggag tgactgcgct ctttcccgcc
     1681 gccagcgggc gtgtagtgat tccgtctgcg cagccggaag gtgcggagac atcggggatc
     1741 gcgacgctga gcttcggagg aaacaatttt gcctcgcagg ttaccacatc aagaaatatt
     1801 gatgcgaaag acgagctgtc gtggctgtcg gacgatggtg cacatcgcgt gaagctcggc
     1861 gccggaatga cgttcgctcg caatacgggc ggcgttccgg ggaatcgcta cgggacctac
     1921 acgttcaact cattgagtga tctgcagaac ggcgtgccga cgtcgttctc acgtacgctc
     1981 gcaccgaccg accgtgcatc tgcaagcgcg gatgcggcgc tgtatgtggg cgatgcatgg
     2041 cgaacggggc cgaagcttca gctggtgtac ggtcttcgtc tggagcacac gagctttgcg
     2101 gatgcgccac gcctcaacgc cgacgctgca accgctttca gtattcacac caacgcgttc
     2161 ccacaggaaa cgcgcctcag cccacgactc ggcttcacat acttttacgg tgcgactgac
     2221 aagaagccgg cgagtgtgac catccgcggc gggatcggtc tgttccgggg cggcgcctcg
     2281 caggtgagct ctgtatttgc cgcggcgcgc gacgctacgg gactcgcgga cagccaggct
     2341 caactgacgt gcgtcggtgc tgcggtcccg ccgcttgact ggaactattt tcagtccgcg
     2401 accgcggatc ttccactgga atgcgccggc ggactgccgg gcacaaccac gtccgcactg
     2461 ccgaatatca tcgcgatcga tccgtcgttt caggttccgc gcacgttgcg cgcgtcgctc
     2521 aacatcagtc gccagtttgc aaaggtgtgg aatgtgtcgc tggacggatc gttttcgaac
     2581 gggtacgccg ggatagcatc gcgcgacgta aacctgctgg cgcggccgca gtttctgctc
     2641 gcagacgagg ggaacaggcc ggtatacgtg aatccgggcg cgatcatcgc atcgacaggg
     2701 gcgatcgcgt tgcgcgattc ccgcgtcgcg ccggagttcg ggaccgtgtc ggtgatatct
     2761 tcaccgctgc gcaatgacta tcgctcgata agcctttcgc tggggcgcat gcttccttcg
     2821 ctcagcatca acggctccta cacgcgcagc ttcgcacgca tgcagatggt gggcaccagt
     2881 acgccaggcg cgttgttcgg aaatggagca tccactggcg gcgatccgcg tgtagccgag
     2941 tgggtgcaga atccgtacgc gccaccacat cagctgcgcc tggtcatgtc gtaccggcca
     3001 acaaagtgga tggagctaac accatccgta tttgcacaga gcgggtacac tttcgacgcg
     3061 cttgtgagcg gagacatcaa cggcgatgga tcgaataacg atcgcgcgtt cgtattcgac
     3121 ccggcgaaga cggcggatac ggccatcgcg aacggaatgc gcagattgct cgcagcggcg
     3181 ccggcgcgta tccgcgactg tctcgatgcg gacctcggca aggttgcgag cgcgggaaca
     3241 tgtcggacgc cgtggttcgt gatcggaggg atgtccttca aagtgacgcc accatggaac
     3301 ggtggccggc tatcgctcag tttgcagacc aataatctgg gcggcggtct ggaccttctg
     3361 ttacatggag agtcgcatct gcatggatgg ggcagctttc ccgcgacgga ccagacgttg
     3421 ttgtacgtgc gaggcttcga cgccgcgtct cagagcttca agtacgccgt gaacgagcgg
     3481 tttggcgtgc cgacggcgaa ccacacgtac tacaggcaac cgatgcagat gacgctcgtt
     3541 gcgcagatgg cgcttggtcg gatgcagggc ggcgggatgg gcggaatgcc accgatggat
     3601 gcgccggcgc acgcgggagt cgcatcgggt gcgaccggag cgacgcatgc ggacacgctg
     3661 cggtcgaaaa ttgcggcgac gatgccgaac gtgtttcgcc gcgcgctcgc gttgaatgat
     3721 tcgctcaagc tcgcgctcga tactgcgcag atggcgcgga tcaaggtgct tggcgacgca
     3781 tatcagtcgc gtgcggattc cctgacatct gccattgttg cgatcatgtc ggcgccggtg
     3841 gctggtgccg atccgactgc gcttgctacg cgcgtgcgtg cgaagagcga cgaggcgaac
     3901 gtgctggtaa cgaatgctat cgccgatctg cgcaaggtgt tgcggccgga gcaggtggag
     3961 aagttgccgg acagcgtgac gaagagcgtt aagtgaatct ggaagtcgtc atcccagcct
     4021 tcggcgggat ggcgacattc aacgaacccg gctctcctcg ggccgatgtg gcatcagacg
     4081 tgtcagatac tttgtcagat cgtcgatgga tgccttgagc ggcgcgcgga agcctatgta
     4141 gccgtccggt ctcacgagat acatcgcggg gcgaacggag ccatattcgt cgcgcaacga
     4201 tcgcggcagg cgcgtgttgg atcgggtcat cggcggcacc ctcgcgccgt cgtgcggctg
     4261 gtttgcgtct gacacaacca ctggtgttat gacgtcgcca tacgatgcaa caatctttct
     4321 tgatacgtcc tcggcgagcg caacgtcggc tgccgagtcg acgaccatca gcagtgtgtg
     4381 ttgcgggcgc gagcagacgt cgaggatgtg gatcgtggcg ccgtcggggg cgagtcgcgc
     4441 cacggcgtcg ggcgcgcggt ctccggcccg cggaccgcgc acgatgtgat ggtcctcgac
     4501 gatcgagctg tgctcgtact cgatgtcgat ttccgagacc atgcgcgcag ctccgtgctg
     4561 aacgaagttg aggctgccga gcaacggcgc aacatgctgc ctgatgaatg cgccgagtcc
     4621 actggacgct cccgctacac gaaacatcac gtccgtctgc ctcagcaccg agcgctcgac
     4681 gggatatctc tccgactgat agctgtcgag tagcgaggga tcggatcggc cgctgcatac
     4741 caatgcaagc ttccatgcga gattgacggc gtcctgaatc ccggtgttca tcccctgacc
     4801 gccggctgga ctgtggatgt gagctgcgtc gccggcgagg aatacgcgtc tcgatctcag
     4861 ttccttcacc atcctgctgt tgactcgaaa gctggctatc cattccggat cactcagcgt
     4921 tacacgttcg tgcattcgcg cgttcaccat ctgctgacat tcttccagtg taagatcgcg
     4981 tccgcgggga ttcgccggcg ggttgtccgc aatgacgcga tagcggccgt taccgagcgg
     5041 aaagatcgcg cagatgtcgc cgtgctccga gaagatatgt gcttcggagt cgctgaatcg
     5101 cgactcgaca tgcacatcgg cgaggacaaa tacctgttcg aatgtgtgtc cctcgaacgg
     5161 catgtcgagc gcgcgccgga cggtactgtg cggaccgtcg catcccacta cccaatcgac
     5221 gcggctgcgc tcggtacgtc cgttgagatg gcgcagctcg accgtggcct tctcggcgtc
     5281 ctgtgacagc gagagcaatt ccacaccgcg ctcgaccgcg actccaagtt gccggaggcg
     5341 atcgccgagt atgcgctcag tttccggctg cgccagcagg agtatgtacg gatatgcgct
     5401 gtcgaggtca tcgaagcgta tatggaggat gcgcttgccg ttggagtaga tgttgccagc
     5461 gtggaccgaa tggccggcgg cgacgaagtc gtctgcgagc tgcatgagtg acagcacttc
     5521 gagtgtccgc gcctgcagga cgatagccct ggatctatcg gacggcgcca acgccttgtc
     5581 tatcactcgg cattgcactc cgtgtcgcgc cagctcggcg gccatcgaga ggccagtggg
     5641 gccggctcct actatgagaa cggattggag catcgagatc ctccagtatt ctgcaacatc
     5701 agcaagatag gcgcgcgcac cagtcgcgcc aattggcgac acgtctccgt cgaaaaaacg
     5761 tcaaacatcg gcaccatatg gcgaccaggc gccggcctcc ttgtcgtcga ggttcttgga
     5821 ctcctgcagc atcgtctcca ggtcgagctc gcgctgaagc tggcgaagga tgtcgtcgtt
     5881 tatggtctcg ctctcgcgga gtcgtagcag cgactcgcgc tgcgcgccga ttatgcgctc
     5941 gtttacgcgc gtgactgcat ctgatacacc agccatctcg tcggccgcct cgcgctcctc
     6001 ggaggtcgcg tcgtcgctcc gaccttcgct gcgggccacc cagcgtttct ctcgatccgc
     6061 atagcgcgcc cgcaatcgct ttgcaattct cgcatcgatc ccgccgtgtg cgatcatatc
     6121 gtcgattacg ccgagtgcgg ccttcgcctg ctccacacgc gccgttatct cctcgcgctt
     6181 gccggatgtg tcgcgatgca ggccgagcag gcgtacgacg ggagagagtg tcatgccctg
     6241 tcctacaaga gttacgaata tcacgaagaa cgtgatgaat attatgagat tacgcgcagg
     6301 tacgggtgcg cccgagtggg cgtagaacgg aatagcgagc gcgatcacga gcgagtctcc
     6361 gccgcgcatt ccggcccatg cgacgagcgc gccctcgttc cacgcgggct cgatcttctc
     6421 gtgcttccgg cgtcgcacgg cgcggaggat cgccaccgag attcccaccc acgcgaaccg
     6481 caccagcatg catgccagcg tgatgatgga cgcatagatg agcagcgtgg gtatggagtg
     6541 atccttgagg ccgcgcatta tgtacggcag ctcgagtccg atcagtatga agatcaggct
     6601 ctggaagagg aacgtcagca tcgtccacat tgcttctgcc tgcacgcggg atgcgggcgc
     6661 catcgatttg ggatcctgac ggccgagata cagtccgagc gtgaccactg cgatgacacc
     6721 ggatgcgccg atggcgtctg ccggcacaaa cgcgagaaat ggtgacagca gcgacagagt
     6781 attctcgacg actggcaggc ggccggtgac agtctggcga aacaacgcga tcagccatcc
     6841 aacgacgagg ccaatcgcgg cgccggcgac gccggcggtg agcaggtgga agctcgcgga
     6901 ggccgcggag aaggcaccgg taaccgcagc ggtgagtgcg actctgtacg caaccagcga
     6961 tgtggcgtcg ttgagcaggc cttcgccttc gagcacggcg gtgattcgcc gggacacgcc
     7021 gagcggaacg acgacagcgg ttgcggctat gggatctggt ggtgcgacga tggcgccaag
     7081 caggaaggcg gacgcccagg aaaactcgga gctgagcagg tgcgccacga ccgcgacgat
     7141 tgccatcgtg agcagaacga gcactgtcgc caggcgggcg acggggccaa tcacatcttt
     7201 cagctcgcgg atcgatgtgg tgagggacgt ccagtacagg agaggcggaa cgaatatgag
     7261 aaagaggagt tccggatcac tgtcgatgcg tggcaggccc ggcacgaatg ccagggcgag
     7321 ccccccgatg acgagcaggg atgggtaggg aacactccac cggcgcgcga g
//
LOCUS       DATIMD010000510         2284 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1074549, whole genome shotgun sequence.
ACCESSION   DATIMD010000510 DATIMD010000000
VERSION     DATIMD010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2284
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1074549"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1058)
                     /locus_tag="VLI40_11405"
     CDS             complement(<1..1058)
                     /locus_tag="VLI40_11405"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HSU97829.1"
                     /translation="MNSLSRRLRVATAICALIAPVALASSAAAQTSTLPSETPAKFTP
                     ATSSFDYVRREMMIPMRDGVKLHTVILVPRGAHRAPILMTRTPYDANATTTYAASAHL
                     ASNLAGYDNALDVIIPGGYIRVVQDVRGKYGSEGDFVMNRPLIGPLNPTKVDESTDTY
                     DTIDWLVKNIPESNGKVGVLGISYDGFEPLMALVNPHPALKVSVPMNPMVDGWMGDDW
                     FHNGAFREQNMPYVLEQEATRDNSAKWWTDHFDDYDLYLDGGSAGELGKAHGLEQVGF
                     WNKILAHPSYDSWWSQQAMDKILAAQPLKVPVMLVHSLWDQEDIYGAIAVYKAIKPKD
                     VNNDKVFLVMGPWHHGQE"
     gene            1351..1869
                     /locus_tag="VLI40_11410"
     CDS             1351..1869
                     /locus_tag="VLI40_11410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97830.1"
                     /translation="MTDRVSSERELAEVLLATEISRLGDERNATWAPGLSDAEIALAS
                     GERALQLVQEHLRDWFGPDGVDALLIRALERARSSHPILIGVQPPVSGTLRLIGITEN
                     DRAVSQQNGALDSREIIEGIVALLAAILALIARLVGDEMMRHLVKQIWPVLPDDASLP
                     NDSPNNHERSGK"
     gene            1935..>2284
                     /locus_tag="VLI40_11415"
     CDS             1935..>2284
                     /locus_tag="VLI40_11415"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HSU97831.1"
                     /translation="MATGVPGLDDVLGGGIPEYSFNMIAGAPGTGKTTMAEQIMFANA
                     TAERPALHFTVLGEPPIKMLRYQQQFDFFDLSRVGSEVRFLNLSEEVLERDLNVVFDR
                     IVGEVERANPGIVVV"
BASE COUNT          419 a          606 c          770 g          489 t
ORIGIN      
        1 atttcctgac cgtggtgcca cgggcccatg acgaggaaga ccttgtcgtt gttcacgtcc
       61 ttcggcttga tggccttgta gacagcgatt gcgccgtaga tgtcttcctg gtcccagaga
      121 ctgtggacga gcatcaccgg caccttgagc ggctgcgctg cgaggatttt gtccatggcc
      181 tgctgactcc accaggaatc gtagctcggg tgggccagga ttttattcca gaatccgacc
      241 tgttccaggc cgtgcgcctt gccgagctcg ccggcggagc cgccgtcgag gtagaggtcg
      301 tagtcgtcga agtgatcggt ccaccatttc gcgctgttgt cgcgggtggc ttcctgttcg
      361 agcacgtagg gcatgttctg ctcgcggaag gcgccgttgt ggaaccagtc gtcgcccatc
      421 cagccatcga ccatcgggtt catgggaacg gagaccttga gcgctggatg cggattgacg
      481 agtgccatca ggggctcgaa tccgtcgtag gagatgccga gcacgccgac cttgccgttg
      541 gactcgggga tgttttttac cagccagtcg atggtgtcgt aggtgtcggt cgattcatcg
      601 accttcgttg gattgagcgg gccaatgagc gggcggttca tgacgaaatc gccttcggag
      661 ccatacttgc cgcgcacatc ctgcacaacg cggatgtagc caccggggat tatgacgtcg
      721 agcgcgttgt cgtagccggc gaggttggag gcgagatggg cgcttgcggc gtaggtagtg
      781 gtggcgttgg catcgtacgg cgtccgcgtc atgaggatcg gtgcgcggtg ggcgcctctg
      841 gggacgagga tgacagtgtg cagcttcacg ccgtcccgca tggggatcat catctcgcgt
      901 cgcacgtaat cgaatgacga cgttgcggga gtgaatttcg ctggcgtctc gctgggaagg
      961 gtcgaggttt gcgcggcggc ggatgatgcg agcgctactg gcgcgatcag tgcacagatt
     1021 gcggtcgcga ccctgagacg gcgagagagc gaattcatag tccggttggt gagagtcggc
     1081 ctgaatggga gaatgtacat gttccgggca ccggcgctcg ggcagtcgtc ttgcagcact
     1141 tccgtattct actgcggacg gtaacttttc ctgcgcgtcg tacgtttccc cttacgctgg
     1201 cagacagtcg tacatgctac tgtctgccag tgcagacatg cgcattagcg aggatcagag
     1261 tgccagtagc accagtgatt ggtaccgtgt tccggcgcca ccagtagtga ccaaccggtg
     1321 gttgttgatg accggattgg gtggcgtgca ttgactgatc gcgtctccag cgagcgcgag
     1381 ctggccgagg tgctactcgc gactgaaata tcgcggcttg gcgacgagcg taatgcaacc
     1441 tgggcacccg gtttatccga tgcggaaatt gcgctggcga gcggcgagcg ggcgctccag
     1501 ttagtgcagg agcatctccg ggattggttc ggcccggacg gtgtggatgc gctgttgatc
     1561 cgtgcgctcg agcgggcgcg cagctcccat ccaatactga tcggggttca accgcctgta
     1621 tcggggacac ttcgtctcat cggaattacc gagaacgatc gtgcggtatc gcagcagaat
     1681 ggcgcgctcg acagtcgtga aataatcgaa ggaattgtgg cgctgttagc tgcgatactc
     1741 gcgttgatag cccgtctggt tggcgatgaa atgatgcgac acctcgtgaa gcagatctgg
     1801 ccagtattgc ccgatgacgc gtcgcttcca aacgacagcc ccaacaatca tgagaggtct
     1861 ggcaagtgag tgagccaaac ggggggcgtc cgcgaacacg acaggatact cgaaagcgcg
     1921 tcacgattcg acagttggcg acgggagtgc cgggcctgga cgatgttctg ggcggcggaa
     1981 tacctgaata ttcgttcaac atgatcgctg gcgcgccggg caccggcaag acgacgatgg
     2041 cggagcagat catgttcgcc aacgcaacag ccgagcgtcc tgcgctgcac ttcacggtgc
     2101 ttggcgagcc gccgataaag atgctgcggt atcaacagca gttcgacttc ttcgatctct
     2161 cccgcgtggg gagcgaggtt cggtttctga atctgagcga ggaggtgctg gagcgcgacc
     2221 tcaacgtggt gttcgatcgc atagttggcg aggtggagcg tgccaatccc ggaatcgtgg
     2281 tggt
//
LOCUS       DATIMD010000511         5326 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4249377, whole genome shotgun sequence.
ACCESSION   DATIMD010000511 DATIMD010000000
VERSION     DATIMD010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5326
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4249377"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1012
                     /locus_tag="VLI40_11420"
     CDS             <1..1012
                     /locus_tag="VLI40_11420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97832.1"
                     /translation="GAAIYYWLKSPKQVVTLDFMDASGKLIRHFTSEQDSASAADSVA
                     GAAKRVAMRDSLARAGLSKDSIAKLVRGTESGTQAGRGGRRGGAQSTRVPNKAGLNTF
                     NWNLRYPDAATFKGLVFWGGGVTGPAAPPGTYSVRMTTGGVTQTQKFELVKDPRTSAT
                     QHDLDEQFAFLIRIRDTLSAANNAVRTIRNVRWQVGERGKALPEKDRSAFEQASAPML
                     QKLSTIEQAIYQTQSHASEDPLNFPIRINNKIAALGSVVGGADARPTDQSYAVYKILS
                     AQLDTQLRDLRTTLGELKGVNTFLASHNGKAIVPSTAEVKSDVPIEDEGDGDMDAEKG
                     ER"
     gene            1012..2424
                     /locus_tag="VLI40_11425"
     CDS             1012..2424
                     /locus_tag="VLI40_11425"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSU97833.1"
                     /translation="MKGVLRALCIAALTAAPVAVSAQSQPVIIRGGWIFTATSDTVEH
                     NRGIFIRAGKILVTDGNMAEEDTAGARVITLSNDEYVLPGIFDMHAHYNMTLGEGGIR
                     QDEYRYNPLIFLANGVTSTFPAGEYDPNGMMETRKRIDSNQQIGPRIYNSGPYFGTAR
                     RGWTQGMTPDSIYKEVDYWAANGVRSFKAKGISPQDLRPLIERAHLHGITVTAHLESG
                     FRNSTNAKDAILMGIDRVEHILGGDELSRDKAAYPSWIHVDTASREFKDIVRLFLRHH
                     VVFDPTITAPVYFTTVADKPGFDYWVDERKFFTPYVQQWVKEQPPRKAYPLFDSLYYA
                     MRRTTKAFYDAGGTLTLGTDNPSRGEYLAGFSAHRELQTLVVSGIPPAAALRIATING
                     AKALDVGSTLGSIEPGKLADLFVIRGNPLRDITNTRHVQMVMKAGSVYDPAALLKMAE
                     GKIGPTGPQARPAQGSHPEP"
     gene            2565..2638
                     /locus_tag="VLI40_11430"
     tRNA            2565..2638
                     /locus_tag="VLI40_11430"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2599..2601,aa:Arg,seq:ccg)
     gene            2694..3638
                     /locus_tag="VLI40_11435"
     CDS             2694..3638
                     /locus_tag="VLI40_11435"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HSU97834.1"
                     /translation="MPRVEHWSQLRIGLIVLTGIIAAVAAVLSFARIGALHGKTTRLY
                     LVTDMASGVLNGTEVWLAGKKVGLVRSVDLRPPATDTAERIAIAMDVLDPYVRYIRRN
                     SDVRIQPGGRLIGTPVVYIDVGTEAAPGVSAGDTLRARAQIQARSGLADASSLGDSLT
                     EIATTVSTIKTEFDSTASDLSGLARMSSRQANAVHVALDKFSDRALASHGTIAGLVQD
                     SARLRQEASRVSALADSIGMAANGSGEIGRFRRDSTLIVQARQTLASVAELRRRVARY
                     AGRSDEGTALAMQLDRTHAQLDSIVQDAKSHPLRYITF"
     gene            3738..4991
                     /gene="rho"
                     /locus_tag="VLI40_11440"
     CDS             3738..4991
                     /gene="rho"
                     /locus_tag="VLI40_11440"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HSU97835.1"
                     /translation="MEIAELKRQTVAELHGMADGLQVEHSEGLTKPELILKIGQSLLD
                     AGVSLHAEGVLEILPEGYGFLRSQDWSYLAGPDDVYVSPSQIKRFDLRTGDEVFGEVR
                     PPKPWEKYLALLRVEQVNGLEPDVTKTRVPFDSLRPQYPDTRLRLETEDGDLSMRVVD
                     IMAPIGKGQRGLIVAPPRAGKTILLTKMANAISENHPEVRIIMLLIDERPEEVTEIKA
                     TVPRAEVISSTFDEGAARHVQVSDMVLQKARRLVEAGHDVVILLDSITRFARAHNTVA
                     PTTGKILSGGVEATALQKPKAFFGTARNIDGGGSLTIIATALIETGSRMDDVIFEEFK
                     GTGNMELVLDRRIADRRIYPAIDIFKSGTRKEELLLDQSEINRTTLLRQFLSDMPETD
                     AIDFLLKQMARTKNNAEFFRKMAEG"
     gene            4988..>5326
                     /gene="ruvX"
                     /locus_tag="VLI40_11445"
     CDS             4988..>5326
                     /gene="ruvX"
                     /locus_tag="VLI40_11445"
                     /inference="COORDINATES: protein motif:HMM:NF015607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HSU97836.1"
                     /translation="MTVPATPTRPPARGRLMAVDYGDKRVGLAISDPTGTIASPAGFI
                     ERRAGKRPPVAELIRRAEALEASGFVLGLPLDGAGEETPRCAEVRVVGAALGERTGLP
                     VRYVDERYTTA"
BASE COUNT         1104 a         1591 c         1717 g          914 t
ORIGIN      
        1 cggcgccgcg atctactact ggctcaagtc accgaagcag gttgtgacgc tcgacttcat
       61 ggacgcgagc ggaaaactca ttcgccattt cacgagcgag caggattcag cgtcggcagc
      121 tgacagtgtc gcgggtgcag cgaagcgcgt tgcgatgcgt gacagtctcg cacgagccgg
      181 cctgagcaag gacagcattg cgaagctggt acgcggtacg gagtcgggca cgcaggccgg
      241 acgcggcggc cgccgcggcg gcgcgcagag cacgcgcgtt ccgaacaagg cggggctcaa
      301 cacgttcaac tggaatcttc gctaccctga tgcggcgacg ttcaagggcc tggtattctg
      361 gggcggcgga gtgacgggac cagccgcgcc gccgggcacg tattcagtgc gcatgacgac
      421 cggtggtgtt acgcagacgc agaagttcga gctcgtgaaa gatccacgca cgagcgcaac
      481 gcagcatgat ctggatgagc agttcgcatt cctcatcagg attcgtgaca cgctgagtgc
      541 tgcgaacaac gcagtgcgta caatccgcaa cgttcgctgg caggttggcg agcgcggcaa
      601 ggcgctgcct gaaaaggatc gctccgcgtt cgaacaggct tccgcgccga tgctgcagaa
      661 gctttccacg atcgagcagg cgatatacca gacgcagagt cacgccagcg aagatccgct
      721 caacttcccg atccgcatca acaacaagat cgccgcactg ggatcggtcg tcggtggcgc
      781 tgacgcgcgg cccacggatc agtcctacgc ggtctacaag atcctgtccg cgcaactgga
      841 cacgcagctc agagatctca ggacgacgct tggcgagctc aagggcgtca acacattcct
      901 cgcatcacac aacggcaagg cgatagtgcc gagcaccgcg gaagtgaaga gcgatgtccc
      961 aatcgaggat gaaggcgatg gggacatgga cgccgagaag ggggagcgct agtgaagggt
     1021 gtccttcggg cgctgtgcat tgctgcactt actgcggctc cggtcgcggt aagtgctcaa
     1081 tcgcagccgg tgatcattcg tggcggatgg atattcaccg ccacgagtga cactgtggag
     1141 cacaatcgcg gaatcttcat ccgtgcggga aagattctcg tcactgatgg aaacatggcg
     1201 gaggaggata ctgccggagc gcgcgtcatc acgttgtcga acgatgaata cgtgctcccc
     1261 ggcatcttcg acatgcacgc gcactacaac atgacgctgg gcgagggagg aatcaggcag
     1321 gacgaataca ggtacaatcc tctcatcttt ctggcgaacg gtgtgacgtc gacgtttccg
     1381 gccggcgagt atgatccgaa cggaatgatg gagacgcgaa agcgtataga cagcaaccag
     1441 cagatcgggc cgcgcatata caactcggga ccgtatttcg gcaccgcgcg ccgcggctgg
     1501 actcagggaa tgacgccgga ttccatctac aaggaagtcg actactgggc tgcgaacgga
     1561 gttcgcagct tcaaggcgaa gggaatctcg ccgcaggatc tccgtccgct catcgagcgc
     1621 gcgcatctgc acgggatcac cgtgacggcg cacctggagt cgggcttcag aaacagcacc
     1681 aacgcgaaag atgcgattct catggggatc gaccgcgtcg agcacatact cggcggcgac
     1741 gagctctcgc gcgacaaggc ggcgtatccg tcgtggatcc acgtagacac cgcgtcgcgc
     1801 gaattcaagg acatagtgag gttgttcctg cggcatcacg tcgtattcga tcccaccatc
     1861 accgcaccgg tttacttcac caccgtcgca gacaagccgg gattcgacta ctgggtggac
     1921 gagcgcaagt tcttcacgcc gtacgtacag cagtgggtga aggagcagcc gccgaggaag
     1981 gcgtatccgt tgttcgattc cctgtattat gcgatgcgcc gtaccacgaa agcgttctac
     2041 gacgccggcg gaactctcac gcttggcacc gacaatccga gccgcggcga gtatctcgcg
     2101 ggcttctccg cgcaccgtga gctgcagacg ctggtcgtct ccggtattcc gcctgcggcg
     2161 gcgttgcgga ttgcgaccat caacggcgcg aaggcgctcg atgtcggatc gacgcttggc
     2221 tccatcgagc ctggcaagct tgcggatctg ttcgtgattc gcgggaatcc gctccgcgac
     2281 atcacgaaca cccggcatgt tcagatggtg atgaaagccg gcagcgtgta cgatcccgcc
     2341 gcgctgctga agatggcgga agggaaaatt ggtccgaccg gaccgcaggc gcgtcctgcg
     2401 cagggctcgc atccagagcc ctgatacgga catgatgacc ggataggcaa gatcgcatcg
     2461 gtgctgtcgg gagtggtctt ttacgtacgg accgctccca accgatatat cccttggtgg
     2521 cgccctgttg tgggacccgg ttagtttaca ggagtacaaa agtcgcgcgc gtagctcagc
     2581 tggatagagc gtcggcctcc ggagccgaag gtcgtgggtt cgaatcccgc cgcgcgcact
     2641 gccccgccct cccttccact cgcaggctcg aatccggcac tcctccccgc cgcatgccac
     2701 gcgtcgaaca ctggtcccaa ctcagaatag gtctgatcgt cctgaccggc atcattgccg
     2761 cggtcgcggc ggttctgtcg ttcgcgcgca tcggagcgct gcatggcaag acgacacggc
     2821 tgtacctggt gacggatatg gcctccggag ttctgaacgg aaccgaagtc tggctcgccg
     2881 gcaagaaggt cgggctggta cgctccgtgg acctgaggcc gccagcgacg gataccgcgg
     2941 agcgcatcgc gatcgcgatg gacgtgcttg atccgtatgt cagatatatt cggcgcaact
     3001 cggatgtgcg gatacagccg ggtggacggt tgatcggaac tcctgtcgtg tacatcgacg
     3061 ttggaacgga ggcggcaccg ggagtcagcg ctggcgacac actgcgcgcc cgcgcgcaga
     3121 tccaggcgcg ctcgggactg gcggacgcat cgtcgctcgg cgacagcctg accgaaattg
     3181 cgaccaccgt atcgacgatc aaaaccgaat tcgactcgac ggcgagcgat ctgtccggat
     3241 tggccagaat gtcctcgcgt caggcaaacg cggtgcacgt cgcactcgac aagttctcgg
     3301 accgcgcgct cgcgtcgcat ggcaccatcg ctggcctggt gcaggactcc gcgcggcttc
     3361 gacaggaggc gtcacgcgtg agtgcgctgg ccgattccat cggcatggcg gcgaacggaa
     3421 gcggtgagat cggccggttc aggcgcgact cgacgctcat cgtgcaggct cggcaaacgc
     3481 tcgcatccgt cgcagagctg cgccggagag ttgcgaggta cgcgggccgg tcggatgaag
     3541 ggaccgcgct cgcgatgcag ctggaccgca cgcacgcaca gctggattcg atagtgcagg
     3601 acgcgaagag ccatccactc cgatacatca cgttctagat cacgtatcga tcaggttttg
     3661 atcacgtttt cgacgcgcgc tgcgtaaatc atcagcgctg cccaacacac gcatacaaca
     3721 cacgtacagc aatttttgtg gaaatagcag aactcaagcg acaaacagtg gcagagctgc
     3781 acggcatggc cgacggcctg caggtggagc actccgaggg gcttacaaag cccgagctga
     3841 tcctgaagat cggccagagc ctgctcgatg caggcgtatc gctgcacgcc gaaggtgtgc
     3901 tggagattct tcccgaagga tacggatttc tccgcagcca ggactggagc tacctcgcgg
     3961 gacctgatga cgtgtacgta tcaccgtcac agatcaagcg cttcgatctg cgcactggcg
     4021 acgaggtatt cggcgaggta aggccgccca agccgtggga aaaatatctc gctctgctcc
     4081 gcgtggagca ggtgaacgga ctcgagccgg acgtcacaaa gactcgcgtt cccttcgact
     4141 cgctgcggcc gcaatatccc gacacgcggc ttcgcctgga aaccgaggac ggcgatctca
     4201 gcatgcgagt ggtggacatc atggcgccga tcggaaaggg gcagcgcgga ctgatcgtcg
     4261 cgccgccgcg cgcgggcaag acgatcctgc tcaccaagat ggcgaacgcg atctcggaga
     4321 atcatcccga ggtgcggatc atcatgctgc tgatcgacga gcggcctgaa gaggtgaccg
     4381 agatcaaggc aacggtaccg cgcgccgaag tgatcagctc gacgttcgac gagggtgcag
     4441 cgcggcacgt gcaggtgtcc gacatggtgc tgcagaaggc gcgacgactg gtcgaggcag
     4501 gccacgacgt cgtcatactg ctggactcga taacccgctt tgcgcgcgct cacaatacag
     4561 tcgcaccgac gacgggcaag attctctcgg gcggcgtcga ggcgactgca ttgcagaagc
     4621 ccaaggcgtt cttcggaacg gcgcgcaaca tcgacggtgg cggctcgttg accatcatcg
     4681 caaccgcgct gatcgagacg gggtcacgga tggacgacgt gatcttcgag gaattcaagg
     4741 gaaccggcaa catggagctg gtgctcgacc gccgcatcgc cgaccgtcgc atctatcccg
     4801 cgatcgacat cttcaaatcc ggaacacgca aggaagagct gctgctggat cagagcgaga
     4861 tcaatcggac gacgctgctg cgtcagtttc tgtctgacat gccggagacc gacgcgatcg
     4921 attttctgct caagcagatg gcgcgtacga agaacaacgc ggagttcttc cgcaagatgg
     4981 cggaaggatg accgttcctg cgacaccgac caggccgccg gcgcgtgggc gattgatggc
     5041 agtcgactac ggtgacaagc gtgtcggcct ggcgatcagc gatccaaccg gcaccatcgc
     5101 atcaccagct ggcttcatcg agcgtcgtgc gggaaagcgg ccaccggtcg cggagctgat
     5161 ccggcgtgcg gaagcactcg aggcgagcgg cttcgtgttg ggacttccgc ttgacggcgc
     5221 cggcgaggag acgccgcgct gtgcggaggt gcgtgtcgtt ggcgcggcac tcggggaacg
     5281 cacgggactc ccggttcgat acgtggacga gcgctacacc acggcc
//
LOCUS       DATIMD010000512         2098 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3383684, whole genome shotgun sequence.
ACCESSION   DATIMD010000512 DATIMD010000000
VERSION     DATIMD010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2098
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3383684"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..673
                     /locus_tag="VLI40_11450"
     CDS             <1..673
                     /locus_tag="VLI40_11450"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSU97837.1"
                     /translation="FGVERIAEEELSALRGLERGILRVGASTTIAIYFLPPLLARFHQ
                     QHPGVKLIAESANTRAIARRLLEGRLDIALVEGPVSHERISLIPWREDELVVIAPASH
                     PLVHRRRVRASDLANEPFILREPGSGTRVVAEAALAEHGLHPGTTVQLGSTEAIKQAV
                     AAGLGLAVVSRAAAADQLALGYIAVVPLRSRAFRRALTELRLAGRAPSAATAAFRAAM
                     STVRA"
     gene            746..2008
                     /locus_tag="VLI40_11455"
     CDS             746..2008
                     /locus_tag="VLI40_11455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSU97838.1"
                     /translation="MSISLNRLVILGALAGVVTVPVAVPVAAQRTAGSAATPDTAFDP
                     IKEMVSRLSLEQYKATVKGLTQFGDRRQGTERNRQAVDWIEAQLKSYGCTNTERITYD
                     FQEPPPRQPLTPEQLARFRARAAQTGTKRPGPGGSVMRGKIMPTGVNTDSLRQPDLAL
                     RKLDTPQSVSGERQEVYCTKIGTTHPDEMYIVSGHMDGIGWGEAANDDGSGTALVMQL
                     ARVFNSPDVKTDRSIRFILWNNEETGLNGAKAYVAQREALQGKEDPAGSGKYPEPKWL
                     GVIQHDMMMFDHGMPRADGSMSPVQRPEADVNVEFQSNSKMADASQKLAWTLSSANDK
                     YATDYPAKVGQHMTNTDSQPFQDLVPAISVRENERGAQIGAGWDPQWHQPTDLFKTYS
                     DADFRLGLNAAQTTLSAVAELTGATIKK"
BASE COUNT          418 a          664 c          675 g          341 t
ORIGIN      
        1 gttcggtgtc gagcgcatcg cggaagaaga gttgagcgcg ctgcgcgggc tcgagcgagg
       61 aatccttcga gtcggtgcca gcactaccat cgccatatac tttctgccgc cgctgctcgc
      121 gcgctttcat caacaacatc ccggcgtgaa gctcatagca gagagcgcca acacgcgcgc
      181 gatcgcgcgc cggctgctgg aagggcgact cgatatcgcg cttgtcgaag gccccgtgtc
      241 gcacgagcgg atatccttga ttccgtggcg cgaggacgag ctcgtggtaa tcgcgccggc
      301 ctcgcatccc ctcgtgcacc gacggcgcgt gcgtgcgtcc gacctcgcga acgagccgtt
      361 catcctgagg gagccgggct cgggcacccg tgtcgtcgcc gaggcagcgc tggccgagca
      421 tggccttcat cctggaacga cggtgcaact cggaagcacg gaggcgatca agcaggccgt
      481 cgccgcgggg cttggactcg ccgtggtgtc acgtgcggcc gccgccgacc agctcgcact
      541 tggctacatt gccgtcgttc cgttgcggag cagggcgttc cggcgcgcgc tcacggaatt
      601 gcgattggcc ggacgagcgc cgagcgctgc gacagcggcg ttcagagcag cgatgtcaac
      661 ggtacgcgcg taagcagtgt gagtagaaaa ccgaaaggct cgtgtcgtat tccttatttc
      721 gccttcaccc ccgacccaca tcagcatgtc catctcgttg aatcgcctgg tgatccttgg
      781 cgctctggcc ggcgttgtca cggtgccggt tgccgtgcca gttgccgctc agaggaccgc
      841 cggtagcgct gccactcccg atactgcctt cgacccgatc aaggagatgg tgtcgcgtct
      901 ctcgctggag cagtacaagg cgactgtaaa aggactcacc cagttcggtg accgccggca
      961 gggaaccgag cgcaatcgcc aggcggtgga ctggatcgag gcgcagctca agagctacgg
     1021 ctgcaccaac accgagcgca tcacgtatga ctttcaggag ccgccacctc gccaaccgtt
     1081 gacgcctgaa caactcgcgc gcttccgcgc acgtgccgct cagacgggaa cgaaacggcc
     1141 gggcccgggc ggctcggtca tgcgcggcaa gatcatgccg accggtgtga acaccgattc
     1201 gctgcgccag cccgatctcg cactgcgcaa gctcgacacg ccgcagagcg tcagcggcga
     1261 gcgccaggaa gtgtactgca ccaagatcgg caccacgcat ccggacgaga tgtacatagt
     1321 cagcggacac atggacggaa tcggttgggg cgaggccgcg aacgacgacg gatcgggcac
     1381 ggcgctcgta atgcagctcg cgcgcgtgtt caactcgccg gacgtcaaga ccgaccgctc
     1441 gattcgtttc atcctctgga acaacgagga gaccggactc aatggcgcga aggcgtacgt
     1501 cgcacagcgc gaggcgctcc agggcaagga agatccggcc ggatcgggca agtatcccga
     1561 gcccaaatgg ctcggcgtca tccagcacga tatgatgatg ttcgaccatg gaatgccacg
     1621 tgcggacggc agcatgagtc cagtgcagcg ccccgaagcc gatgtgaatg tcgagttcca
     1681 gtccaactcg aagatggcag acgcgtccca gaagctcgcg tggacgctct cgagcgcaaa
     1741 cgacaagtat gcgactgatt atcccgcaaa ggtcggccag cacatgacca acacggattc
     1801 gcagccgttc caggatcttg ttccagcgat cagcgttcgc gagaacgagc gcggcgcgca
     1861 gatcggggca ggctgggatc cgcagtggca tcagccgacg gatctgttca agacgtacag
     1921 cgatgccgat ttccggctcg gtctcaatgc agcgcagacg acgctcagcg cagtcgcgga
     1981 gcttacgggc gcaacaatca agaagtaagg ccagtgcggc gcgtcgaaat ggagcagtcg
     2041 cacatcacgc gccgcgagct tctgctcgga gcagcagcaa tgataccggt ggtccggt
//
LOCUS       DATIMD010000513         7984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4539526, whole genome shotgun sequence.
ACCESSION   DATIMD010000513 DATIMD010000000
VERSION     DATIMD010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7984
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4539526"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            86..820
                     /gene="ftsE"
                     /locus_tag="VLI40_11460"
     CDS             86..820
                     /gene="ftsE"
                     /locus_tag="VLI40_11460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HSU97839.1"
                     /translation="MSLVRFLNVAKEYTRGGVALSHASFQLHKGEFAFLTGPSGSGKS
                     TILKLIYMEERPTAGDVWVSGVSARDASKKEVSMVRRHLGIVFQDFRLLEDRSAEANI
                     AFALEVTGTPTDMIRQRVSRALTQVGLASKGTALPRELSGGEQQRVAIARALVNDPFV
                     LIADEPTGNLDERATRGIFQLLRDINTAGTAVIMATHDLDLIRRTEYRTIELNHGRLV
                     YDSAEAPPVDKTPRVIAPSHHDENPI"
     gene            817..1662
                     /locus_tag="VLI40_11465"
     CDS             817..1662
                     /locus_tag="VLI40_11465"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease-like cell division protein FtsX"
                     /protein_id="HSU97840.1"
                     /translation="MMALREAFSAFRRAPLLSVLGVVTIAFSLFAFGLFGLVAVNIRD
                     ALQAIENRVEIRAFIADGTPVEASSAAMGDIHAFPEVLSVTYVSQDDAYARARKELGE
                     FSDVFEPGVLPASLDIKLKPGYRDPTTVQAVANRLKSYDFVDDVRYGEDWVAKLYRLR
                     TIATLVGTGLGLAFAAVAVIIIGATIRIMVMARAREIEIMRLVGATNGFIRLPFVLEG
                     FIQGVMGGLLALGLTWATSTAISHSFMRTEFFDPSLATAGVIGGAIIGLLGSTFAVGR
                     QLRRL"
     gene            1671..2843
                     /locus_tag="VLI40_11470"
     CDS             1671..2843
                     /locus_tag="VLI40_11470"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HSU97841.1"
                     /translation="MIALSAMLLLPVVPMKLAAQDTDARLKSNREELERVRRERAELQ
                     QRMNKLQSSAHSLNDELKNINKQHDATKKVVSSLDQQLGLITDEVKGTTSSLVRAEDE
                     AETKRAILNHRLIEIYKRGPLFDFQALLSADSFGELIARYKYLHEIAVHDRALVKRMD
                     DLRTTIRGRRRQLVSLQSDVQQNRVEKAQEEARLQALESQRQKSLVRVQADSRKTQQR
                     LASVKRSESKLNDIISSIEAARRRGSSKASAVARGASSIKTSDYGKLDWPVDGNILYN
                     FGRVVRPDNTTLRWNGIGIAAASGTAVHSVAAGDVVLAGQLGTYGQTVIVEHGGGDYS
                     VYGSLSRISVAKGAHISKGEVVGEVGTSDPDLPPHLHFEIRHGGPAVDPTSWLRGH"
     gene            2892..3749
                     /locus_tag="VLI40_11475"
     CDS             2892..3749
                     /locus_tag="VLI40_11475"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016888 - endodeoxyribonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HSU97842.1"
                     /translation="MNNETLLLGAHISTAGGVPASPGRAKAIGATAMQIFTKMANQWR
                     ERECEPEECAAFREGIAETEVRAISAHDSYLINLASPKDDLRERSLQSFVAELRRCNA
                     LGLHYLVSHPGNYMDDRASGIARNADSISAGLAAAPGDTLLLLETTAGSGTALGATFD
                     ELSTIIERIAPEVRSRVGVCMDTCHVYAAGYDIVGDYEGVMRRFDDTLGINRLHMMHL
                     NDSKFGLGTHKDRHALIAEGELGEVPFRHVMNDPRLARVAKVLETPKGNDAETTDRTM
                     LERLRSYIE"
     gene            3820..5397
                     /locus_tag="VLI40_11480"
     CDS             3820..5397
                     /locus_tag="VLI40_11480"
                     /inference="COORDINATES: protein motif:HMM:NF014675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 10 glycosylhydrolase"
                     /protein_id="HSU97843.1"
                     /translation="MADSFFSLLRKVAAPVALFAAAATSAAQPVAARPDSLPPAISRE
                     FRGVWIATVNNMDWPSRTGLSTWEQQAEMIALLDRAVAMHLNAVIFQVRPEADALYQS
                     DNEPWSPFLSGRMGRAPEPYYDPLAFVVREAHARGLEVHAWFNPYRALQPASPGDAAP
                     SHVSRTDPQVIRRYGSQLWMDPSDPTVVARTVRAIVDVTKRYDIDAIHVDDYFYPYRE
                     NDRAGRTIPFPDAAAYKLYRTGGGTMSLSDWRRSNVDALVQRLGTEIHAVKPWVRFGI
                     SPFGIWRPGYPSSVRGLDSYEEIFADSRKWLNNGWVDYLVPQLYWPVGRPQQDFSQLL
                     AWWVSQNTYQRHIWAGLNAGLAKDTAPRGRGAREIIDQIRLTRAQPGASGDVLFSMKV
                     LMQDPDSLVERLTRDSYAEPALVPASPWLDSIAPGRPAVQPRLDAASGEMVIDMDPAS
                     GNKEPWLWVVQARTSSGWTTQIIPGTEATHFLAGRGDKSPREVWVYAVGRTGNLSPPA
                     RVFPNGDPIPELGSGVR"
     gene            complement(5541..>7984)
                     /locus_tag="VLI40_11485"
     CDS             complement(5541..>7984)
                     /locus_tag="VLI40_11485"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSU97844.1"
                     /translation="PGGAITLPHSKFMSNQRVSTRAVACALVQLAGSGAVAIPAYAGT
                     VSSIGIPARHVARGDLTGTVTDSASGQPLPSAEVSVQQDGRTVLTANTDAFGRYIAHG
                     LPSGTYTVSVRLIGFRVQSREITVGASGDIRADFRLPVVALSLSSVAVTAAIPLTVDT
                     RSGDQRFRQDSYHGAPTNTTSQILQQSIAGAARAPTGEVHIRGQHAEYTYYVDGVPVP
                     AGISGSLNELFDPSIVNQIDFQTGGWDAEYGNKNAAVVNVQTRIPVGGFHSSVSGYGG
                     SFNTNGEGITASMNRGPWGFFVSGSRKSTDMRLEPVVFDTSHDKVINFHNHGEDYSGF
                     AKVQYTPNASNILDLDASLSTTRFQVPYDSTGNVVLDDHQRDRNAFVNLGYRHIFGAD
                     TTAGVEGGATTQPRAAELFVGGFVRSGGLKYVPGVGDSAQFVFFPDTLNAYNLRENRN
                     FTTYGVKADYTVHPARELEFKFGTLSQYTTGHEDFVTTTTSGTSGPASNSNLKGYDVG
                     GYAETAYSPVERFELRTGVRYDAHNAPFAGTRTQLSPRIRLNFFPDPGNTLYLYYGRL
                     FVPTNVEDLRAITSVAQQGVTAAPTLPERDNFYEAGYIHRFPFGLVSKLAAYHKQGTP
                     GIDDNTVPGSAIVTSVNIAQVRITGLETVQDFRPSGPFSAYLNLALNHAYGRGPITGG
                     FFPTDTPQGYFDLDHDQRLSGTISATYAPGKFYTSYTGTYGSGLTNGVDPADCNCSYG
                     TGLFDFNSRTHVDPSYISNVSVGYAFSMGSSVVRPELYVDNLFDKKYLLKGAFFSGAS
                     VGRPRSVQLRINIAQ"
BASE COUNT         1605 a         2370 c         2520 g         1489 t
ORIGIN      
        1 gatggcttcc tgcgcttcag cgtaggactc gaggatgcgg gcgacctgat tgcggacttc
       61 gagcaggcat tgaggtagct gaaggttgag tctggtaagg tttctcaacg tcgcgaagga
      121 gtacacccgc ggcggcgtgg cactgagcca cgcatcgttt cagttgcaca agggcgagtt
      181 cgccttcctc acgggtccga gcggatcggg caagtccacg atcctcaagc tcatctacat
      241 ggaagagcga cctacagccg gcgacgtgtg ggtcagcggc gtgagcgctc gcgacgcatc
      301 caaaaaggaa gtgtcgatgg tgcgacgtca tctggggatc gtattccagg atttccgtct
      361 gctcgaagac agatctgccg aagccaacat tgcgttcgcg ctggaagtga cgggaacgcc
      421 gaccgacatg atacggcagc gcgtcagccg tgcactcact caggtcggac tcgcatcaaa
      481 ggggacggcc ctgccacgcg agttgtccgg cggcgagcag cagcgcgtcg cgatcgcgcg
      541 cgcactcgtc aacgatccgt tcgtgctcat agccgacgaa ccgaccggta atctggatga
      601 gcgtgccacg cgtggaattt ttcagcttct gcgcgacatc aacaccgcgg gcacagccgt
      661 cataatggcg acgcacgatc tcgacctcat acgtcgcacg gaatatcgca cgatagaact
      721 caaccacggg cgtctcgtct acgatagcgc agaagctccg ccggtcgaca agacgccgcg
      781 cgtgatcgcg ccaagtcatc acgacgagaa tcccatatga tggcgctccg tgaagcgttc
      841 tcggcgttcc ggcgcgcacc gctcctgagc gtgctcggcg tcgtcaccat cgcgttctcg
      901 ttgttcgcgt tcgggctgtt cgggctcgtc gcagtcaaca ttcgcgatgc gttgcaggcg
      961 atcgagaatc gcgtggagat acgagcgttc atcgcggacg gcacgccggt cgaggcgtcc
     1021 agcgctgcca tgggcgacat ccacgcattt cccgaggtgc tgtcggtgac ctacgtgtcg
     1081 caggacgacg cgtatgcgcg tgcacgcaag gaattgggtg aattcagcga cgtgttcgag
     1141 cctggcgtgt tacccgcatc gctggacatc aagctcaagc ccggctatcg ggatccgaca
     1201 accgtccagg ccgtcgcgaa tcggctcaag tcgtacgact tcgtggatga cgttcggtac
     1261 ggcgaggact gggtcgcgaa gttgtatcgg ctgcgcacga tcgcgacgct cgtcggcacg
     1321 ggactgggtc tcgccttcgc ggctgtagca gtgatcatca tcggcgcgac gatccgcatc
     1381 atggtgatgg ctcgtgcgcg cgagatcgag atcatgcgac tggtcggcgc gaccaacgga
     1441 ttcatccggc ttccgttcgt cctcgaaggg ttcatccagg gtgtgatggg tggattgctc
     1501 gcgctcggtc tcacatgggc tacgagcact gccatcagtc actcgttcat gcgaaccgaa
     1561 ttctttgatc catcgctcgc tacggccggc gtgattggcg gtgccataat cggtctcctg
     1621 ggaagcacgt tcgccgtggg acggcagctg cgccggctgt gaagtacagt gtgatcgcgc
     1681 tgagcgcgat gctgttgctg cccgtggtgc cgatgaagct cgcggcccag gatactgatg
     1741 cgcgcctcaa gagcaatcgc gaggaactgg agcgcgtcag gcgcgagcgc gccgagctcc
     1801 agcagcgcat gaacaagctg cagtccagcg cgcactctct gaacgacgag ctcaagaaca
     1861 tcaacaagca gcacgacgct accaaaaagg tcgtaagctc gctcgaccag cagctcggtc
     1921 tcatcacgga cgaggtcaag ggaacgacgt cgagcctggt gcgcgccgag gatgaagcgg
     1981 agaccaagcg cgcgatactg aaccaccggc tgatcgagat ctacaagcgc ggaccgttat
     2041 tcgatttcca ggcgctgcta tccgccgatt cattcggaga gctgatcgcg cgttacaagt
     2101 atctgcatga gatcgccgta cacgatcgcg cgctcgtcaa gcgtatggac gacctgcgga
     2161 ccacgattcg tggacggagg cggcagctcg taagcttgca gagtgacgtg cagcagaacc
     2221 gggtggagaa ggcgcaggaa gaggcgcgac ttcaggcact cgaaagtcag cgccagaaaa
     2281 gcctcgtgcg tgttcaggcg gattcgcgca agacgcagca gcggctggcc agcgtcaagc
     2341 ggagcgaatc caagctcaac gacatcatat cctcgatcga ggctgcacgc cggcgtggaa
     2401 gcagcaaggc gagcgccgtc gcgcgcggag cgagctcgat caagacctcg gactacggca
     2461 agctggactg gcccgtggac ggcaacatac tgtacaactt cggccgcgta gttcggccgg
     2521 acaacacaac gctccggtgg aatggcatcg gcatcgcggc agcgtccggt accgctgtac
     2581 actcggttgc cgcgggtgac gttgtacttg cggggcaact tggcacctac gggcagacag
     2641 tcatcgtcga gcacggcggt ggtgactatt cggtgtacgg ctcgctcagc aggatcagcg
     2701 ttgcaaaggg cgcacacatt tccaagggtg aggtggtagg cgaggtcgga acatcggacc
     2761 ccgatctccc gccgcacctg catttcgaga tcaggcacgg cgggccggcc gtggatccga
     2821 catcgtggct gcgcggccac tgacagcatc tcatacaacc gttcatacaa ccgtcttcac
     2881 tggagacccg cgtgaataac gagacgctcc tgctcggagc acacatatcg actgcgggtg
     2941 gcgttcctgc gtcgccgggg cgtgcgaaag cgatcggcgc cacagcgatg cagatcttca
     3001 ccaagatggc caaccaatgg cgcgagcgtg aatgcgagcc cgaagaatgc gccgcgttcc
     3061 gcgaaggcat cgcagaaacc gaagtgcgag cgataagtgc gcacgacagc tatctcatca
     3121 acctcgcgtc acccaaggac gacctgcgcg agcgctcgct tcagtcgttc gtcgcggagt
     3181 tgcgccgctg caatgcgctc ggactgcact atctcgtatc gcatccgggt aactacatgg
     3241 atgaccgcgc gtcgggaatc gcgcggaacg ccgactcgat aagcgccggc ctcgcagcag
     3301 cgcccggcga cacgcttctc ctgctcgaaa cgactgcagg gagcggcacg gccctcggtg
     3361 cgacgttcga cgagctgagt acgataatcg agcggatcgc gcccgaggtg cgaagccgcg
     3421 ttggcgtgtg catggacacg tgtcacgtat acgccgcggg atacgacatc gtgggcgatt
     3481 acgaaggcgt catgcgccgg ttcgacgata cacttggcat caatcgcctg cacatgatgc
     3541 atctcaacga ctccaaattc ggactcggca cccacaagga tcgtcatgca ttgatcgcgg
     3601 agggcgagct tggtgaggtt ccgtttcgcc acgtcatgaa cgatccgcgt cttgcgcgcg
     3661 tagcgaaggt gctcgagact cccaagggaa acgacgccga gactacagac agaacgatgc
     3721 tcgagcgtct gcgcagctac atcgagtagc gcaggcggct gtacccgtta ttcgaacact
     3781 cgttcgaata atctgaacga ccaatgagat agagatgtaa tggcagatag tttcttttcg
     3841 ctccttcgta aggtggcggc tccagtcgca ttgtttgccg ccgcagcaac gtccgctgct
     3901 cagccagtcg ctgcccgacc cgacagcctg ccacccgcga tatcgcgcga atttcgtggc
     3961 gtctggatcg cgacagtcaa caacatggac tggccatcgc gcaccggtct tagtacgtgg
     4021 gagcagcagg ccgagatgat tgcgctgctc gatcgtgcgg tcgcgatgca cctcaatgcg
     4081 gtgatttttc aggtgcggcc ggaggctgac gcgctgtacc agtccgacaa cgagccatgg
     4141 tcgccgtttc tgagcgggcg aatgggacgc gcgccggaac catactacga tccgctcgcg
     4201 ttcgtagtgc gcgaggcgca cgcgcgcgga ctggaagtgc acgcctggtt caatccgtac
     4261 cgcgcattgc aacccgcaag tcccggtgac gccgcaccgt cgcacgtgtc gcggaccgat
     4321 ccacaggtca ttcgccgcta cggttcacag ctgtggatgg acccgagcga tcccacagtc
     4381 gtagctcgta ccgtgcgcgc catcgtcgac gtgacaaaac gctacgacat cgatgccatt
     4441 cacgtagacg actacttcta tccataccgc gagaacgatc gggcgggccg cacgataccc
     4501 ttccccgacg ccgcggcgta caagctgtac cggacgggcg gtggcacgat gtcgctcagc
     4561 gactggcggc gcagcaacgt cgacgcgctc gtgcagcgcc tgggtaccga gattcatgcg
     4621 gtgaagccgt gggtgcgctt cggtatcagt ccgttcggaa tctggcggcc gggatatccg
     4681 tcttcggtac gcggactcga ctcgtacgaa gaaattttcg ctgactcgcg caagtggctc
     4741 aacaacggat gggtcgatta cctcgtgcca cagttgtact ggccagtcgg cagaccgcag
     4801 caggattttt cacagctgct cgcgtggtgg gtttcacaga atacttacca gcgccacatc
     4861 tgggccggtc tcaatgcggg gctcgcgaag gatacggcgc ccagaggacg cggcgcgcgc
     4921 gagatcatcg accagatcag gctcacgcgc gcgcagccgg gcgcgagtgg cgatgttctg
     4981 ttcagcatga aggtgctgat gcaggatccg gatagtctgg tcgagcgtct cacgcgcgac
     5041 agctatgcag aacccgcact cgtgcccgca tcaccctggc tggactcgat cgcacccggg
     5101 cgcccagcgg tgcagccgcg gctcgacgca gcgtcgggcg agatggtgat cgacatggat
     5161 ccggcaagcg gcaacaagga gccatggcta tgggtcgtgc aggcacgcac gtcttccgga
     5221 tggacaacgc agataatccc gggcacggaa gcgacgcact tccttgcagg ccgcggcgac
     5281 aagtcaccac gcgaggtgtg ggtctacgca gttggtcgaa cgggcaacct gtcgccgcct
     5341 gcgcgtgtgt ttccgaatgg ggatccgata ccggagctcg ggagcggcgt ccggtgatgt
     5401 cgcgcatcgc gccgtaacat tagaacccgg ctgttacgag cctggtaaca tcgcgtgctc
     5461 tgcatcgcat ccactgaact attgtaagct gtggggtacg ggcacatgat cccgcccgca
     5521 ccccacgcat acagcactgc ctactgcgcg atgttgatac gaagctgaac gctgcgcggg
     5581 cggccgactg acgcgccgct gaagaatgcg cccttcagca aatacttctt gtcgaagagg
     5641 ttgtcgacgt acagttccgg ccggacgacc gagctgccca tcgagaaggc gtagccaacg
     5701 ctgacattcg agatgtagct cggatcaaca tgggtgcggc tgttgaaatc gaacaacccg
     5761 gtgccgtacg agcaattgca atccgccgga tcgacgccgt tcgtaagacc ggacccatac
     5821 gtgccggtat agctggtgta gaatttaccg ggcgcataag tcgcgctgat cgttccggac
     5881 agtcgctgat cgtgatccag gtcgaagtag ccctgcggcg tatccgtcgg gaaaaatcca
     5941 ccagtgatcg gtccccggcc atacgcatga ttgagcgcaa ggttgaggta cgcggagaac
     6001 ggaccggagg gacggaagtc ctgcacggtc tcgagtccgg tgatgcgaac ctgcgcgatg
     6061 ttgaccgacg ttacgatcgc agagcctggc acggtgttgt catcgatgcc gggtgtgccc
     6121 tgcttgtggt acgctgcaag cttggacacc agtccgaatg ggaaacggtg gatgtatccc
     6181 gcctcgtaga agttgtcccg ctccggcagc gtcggtgcag cggtgacccc ctgctgcgca
     6241 acgctcgtaa tggcgcggag atcctcgacg ttggtcggaa cgaagagccg cccatagtac
     6301 aggtagagtg tattacctgg atccgggaag aagttgagcc gtatgcgagg gctgagctgc
     6361 gttcgggtgc cggcaaacgg cgcattgtgc gcgtcgtacc gcacaccagt cctgagctcg
     6421 aatcgttcaa cgggcgagta ggcagtttca gcataaccgc caacgtcgta tcccttgaga
     6481 ttcgagttgg atgcaggacc cgacgtgccg gacgtcgtgg tagtgacgaa atcctcgtga
     6541 ccggtcgtgt actgactcag cgttccgaac ttgaactcca gctcgcgcgc aggatgtacg
     6601 gtgtagtcgg cctttacacc gtatgtggtg aaattacggt tctcgcgcag gttgtacgca
     6661 ttgagcgtgt ccgggaagaa cacgaactga gcggagtcac caactcccgg aacgtatttc
     6721 agcccacctg accgcacgaa gccgcccacg aatagctccg ctgcgcgtgg ctgtgtggtc
     6781 gcaccacctt ccactcctgc cgtcgtgtcg gcgccaaaga tgtgccggta cccgagattc
     6841 acaaatgcat tacgatcgcg ctgatggtca tccagtacga cgttgccagt cgaatcgtac
     6901 ggaacctgga atcgcgtcgt cgacagactg gcgtcgaggt caaggatgtt ggatgcgttc
     6961 ggtgtgtact gcaccttggc gaatccggag tagtcctctc catgattgtg aaagttgatg
     7021 accttgtcgt gcgaggtgtc gaagaccacg ggctccagtc gcatgtctgt ggacttgcga
     7081 ctgccggaga cgaagaagcc ccacggaccg cggttcatgc tggcggtaat cccctcaccg
     7141 ttggtgttga acgaaccgcc gtaacctgag acgctgctgt gaaagccgcc gaccggaatg
     7201 cgtgtctgta cattgaccac agcggcgttc ttgtttccat attccgcgtc ccagccgccg
     7261 gtctggaaat cgatctgatt gacgatgctt ggatcgaaca gctcattcag gcttccggaa
     7321 atcccggccg gcaccggcac gccatcgacg taatacgtgt actcggcgtg ctgcccgcga
     7381 atatgtacct cgcccgtcgg tgcgcgagcc gctccggcga tcgactgctg aaggatctgc
     7441 gacgttgtgt tggtcggagc gccgtgatag gagtcctgcc tgaaccgttg gtcacctgag
     7501 cgtgtgtcga ccgtgagtgg aattgcagct gtcacggcga cagaggaaag gctcaatgcc
     7561 acgactggca agcggaagtc cgcccgaatg tcgcccgacg caccaaccgt tatctcacgc
     7621 gattgcaccc gaaagcctat cagacggacg ctgacggtgt atgtgccgga gggcaggccg
     7681 tgcgcgatgt accggccgaa cgcgtcggta ttcgctgtga gtaccgtgcg gccgtcctgc
     7741 tgcacgctca cttcagcact ggggagtggc tgcccggacg cactatccgt gaccgtaccg
     7801 gtgagatcgc ctcgtgcaac gtgccgagca ggaattccaa tcgatgaaac ggtgccagcg
     7861 taagctggaa tggcgactgc gccggagcct gcgagctgca ccagggcgca cgcaactgcg
     7921 cgcgttgaaa cgcgttgatt tgacatgaat tttgaatgcg gaagtgtgat cgcgccgcca
     7981 ggat
//
LOCUS       DATIMD010000514         2805 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5123089, whole genome shotgun sequence.
ACCESSION   DATIMD010000514 DATIMD010000000
VERSION     DATIMD010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2805
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5123089"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..546)
                     /locus_tag="VLI40_11490"
     CDS             complement(<1..546)
                     /locus_tag="VLI40_11490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97845.1"
                     /translation="MNLTLAVAPRLLIPVLIGVAATPALLASQRAPNVDVWFEQGNEF
                     DRGQPGRVMYSGDAGSYVTVLRVDTDGRLTVLSPRQPNERSRFGASQSGMAIPFQADP
                     TEGVGYVFAVASRTPFDFRNYRGRGNSWDVGTLGERTGVDPFEIVDRFARSSVGLRGA
                     YSIAYAPYEIGRDGGGRASYQH"
     gene            639..>2805
                     /locus_tag="VLI40_11495"
     CDS             639..>2805
                     /locus_tag="VLI40_11495"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSU97846.1"
                     /translation="MALPTIIDAVEVLPAFTRLANTVPGAGKRLAVAGLHGSSAAAMV
                     AALARRMERRFFVIVAENVGDAERWLADLESLDGGGSVAFYPPRESFGEAEPHAEVAG
                     ERVETLERAARGDVRVLITTARAIMERTQLPAILQYGRLELKKGDVRKLGELIEHLDS
                     IGFERVDMVEDVGQFSVRGGIFDVYGFGMANPMRMEFWGDEISELRHFDLITQRSTRD
                     ADVALILPADGVAAKRASGRKRDARAAKRAGDRVSITDLWAADTIVIMPSESHAEPEM
                     RRTWDEAQHHLLLAMRRGEEVLSRDELYVAPAAAMRTLGSFGTIALGGESEPDIGFPF
                     RAPETINRDLKLLNRIVRDGVPTLILCDNAGQIERLEELLTTNARDPQPAGLVLGVLA
                     GGFFLPPHGTDPGLRVLTDHEIFRRERRIRRARKYITGGGIDTLGAITPGDYVVHLEH
                     GIGIYRGIEQLFVKEATVEVAVIEYEGGDRLNVPLYRIDQIERYRAASDVGDDVPPPR
                     LHKLGGRRWGQQRDRTRAAIQEMTVELLDLYARRSVATRTPALPDSTWQRQLESSFLF
                     EDTNDQRKATVDVKGDMERPRPMDRLLVGDVGYGKTEIAVRAAFKAVQSGRQVAVLVP
                     TTILADQHARTFGDRFADFPVVVKVMSRFQTHKEQLETLKEVAAKKVDVVIGTHRLLS
                     PDVTFGDLGLIIIDEEHRFGVKHKERLKQLRLETDVLTLT"
BASE COUNT          534 a          829 c          937 g          505 t
ORIGIN      
        1 atgttgatac gacgcgcgcc ccccgccgtc ccggccgatc tcatacggcg cgtaggcgat
       61 ggaatacgcg ccgcgaaggc cgacactgga ccgcgcaaag cgatcgacga tctcgaacgg
      121 gtcgacaccg gtccgttcac cgagagtccc tacatcccag ctgtttccgc gtccccggta
      181 attcctgaaa tcgaacggtg tgcgcgatgc cacggcgaag acgtacccca cgccctctgt
      241 cggatcggct tggaacggaa tcgccatgcc cgactggctg gctccgaatc tcgaacgctc
      301 gttcggctgg cgtggagata gcacagtgag ccggccgtcg gtatcgaccc ggaggacagt
      361 cacatagctg ccggcgtcgc ccgaatacat cacgcgcccg ggctggccgc gatcgaactc
      421 gttgccctgc tcgaaccaga cgtccacgtt cggcgcccgc tgggaggcga gcagcgccgg
      481 tgtggcggcg acgccaatga ggacgggaat gagcaggcgc ggagcgacgg ctagcgtaag
      541 gttcatttga tgcctcctcg agagactacc ccaaattatg ttgcagtttc ccggttcgga
      601 tcaagtttcc gggcgggacc ctgtaaataa gtgggttgat ggccttacca acgattatcg
      661 acgcagtcga agtgcttccc gcgttcacgc ggttggcgaa cacggtaccg ggcgcgggaa
      721 agcgccttgc cgttgcgggg ttgcacggct cgagtgctgc ggcgatggtc gcggcactgg
      781 ccagaaggat ggagcgacga ttcttcgtga tcgtcgccga gaatgtcggg gatgccgaac
      841 gctggctcgc cgacctcgag tcgttggatg gaggcggatc ggtcgcgttc tatccgccgc
      901 gcgagagctt cggcgaagcc gagccgcacg ctgaagtcgc gggcgagcgc gtggagacgc
      961 tggagcgagc cgcgcgcggc gatgtgcgag tgctcatcac tactgcacgt gcgataatgg
     1021 agcggacgca gctccccgcg atcctccaat acggtcgtct cgagctgaaa aagggcgacg
     1081 tccggaagtt gggcgagctc atcgagcatc tcgattccat cgggttcgag cgcgtcgaca
     1141 tggtggagga cgtcggtcag ttcagcgtac gcggcggaat cttcgacgtg tacgggttcg
     1201 gaatggcgaa tccgatgcgc atggaattct ggggtgatga gatatcggag ctgcgtcatt
     1261 tcgatctcat cacacagcgc tccacgcgcg atgcggacgt cgcgctgata ctacctgcag
     1321 atggagtcgc ggcgaagcgc gcgagtggtc gcaagcgcga cgccagggct gcgaagcgcg
     1381 cgggcgaccg tgtgtcgata accgatctct gggcggccga cacaatcgtc atcatgccgt
     1441 cggagtcgca cgccgagccg gagatgcgcc gcacgtggga cgaagcgcag caccatctcc
     1501 tgcttgcgat gcgtcgcggt gaggaggttc tctcgcgcga cgagctgtac gtcgcgccgg
     1561 ccgctgcgat gcgcacgctg ggctcgttcg gcaccatcgc actcggcggg gaaagcgagc
     1621 cggacatcgg gtttccattc cgcgcgccgg aaacgatcaa tcgcgatctc aaattgctga
     1681 atcgcatcgt gcgcgacggt gtgccgacgc tgatcctgtg cgataacgca ggtcagatcg
     1741 agcgactgga agagttgctc actacgaacg cacgcgaccc gcagccggcg ggcctcgtac
     1801 tcggcgttct cgctggcggt ttttttctgc cgccacacgg aacagatccc ggtctccgcg
     1861 tgctcacgga tcacgagata ttccggcgcg agcgacgtat tcgccgagcg cggaagtaca
     1921 tcaccggagg cggcatcgat acgctgggcg cgatcacgcc cggggattat gtcgtgcatc
     1981 tggagcatgg aatcggcatc tatcgcggca tcgagcagct tttcgtcaag gaagcgacgg
     2041 tcgaggtcgc ggtgatcgaa tacgagggcg gggatcgcct gaacgttccg ctgtatcgca
     2101 tcgatcagat cgagcgctat cgcgcggcgt cagacgttgg cgacgacgtt ccgccaccgc
     2161 gcctgcacaa gcttggcggg cgacgctggg gtcagcagcg tgatcgtacg cgcgcggcga
     2221 ttcaggagat gaccgtggag ctgctggatc tgtacgcgcg tagaagtgtc gcgacgcgca
     2281 cacccgcgct gcccgacagc acgtggcaac gtcagctcga atcgtcgttc ctgttcgagg
     2341 ataccaacga tcagcgcaag gcgaccgtgg atgtgaaggg cgacatggag cgcccgcgtc
     2401 cgatggaccg gctgctggtt ggtgacgtcg gctacggcaa gaccgagatt gcagtacgcg
     2461 cggcgttcaa ggcggtgcag tccggaaggc aggtcgcggt gctcgttccg acgacgattc
     2521 tcgcggatca gcacgcacga acttttggcg atcgcttcgc ggatttcccg gtggtcgtga
     2581 aggtcatgag ccgattccag actcacaagg aacagctcga gacgctcaag gaagtcgcgg
     2641 caaaaaaggt cgatgtcgtg atcggcacgc atcgtcttct cagtcccgat gtgacattcg
     2701 gcgatcttgg tctcatcatc atcgatgaag agcatcgctt tggagtaaag cacaaggagc
     2761 ggctcaagca gctccgattg gagacagacg tgcttacact cacag
//
LOCUS       DATIMD010000515         1836 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1368548, whole genome shotgun sequence.
ACCESSION   DATIMD010000515 DATIMD010000000
VERSION     DATIMD010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1368548"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..214
                     /locus_tag="VLI40_11500"
     CDS             <1..214
                     /locus_tag="VLI40_11500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU97847.1"
                     /translation="WNAIVGNGGQESACGWCKDKWGLSWQITPIALTQAITDADPAAA
                     KRAFDAMMEMGKIDIGKIEAARRGVS"
     gene            complement(228..>1836)
                     /locus_tag="VLI40_11505"
     CDS             complement(228..>1836)
                     /locus_tag="VLI40_11505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97848.1"
                     /translation="TARLVAAESGDELASYHESAKDAGDLIPSVDRLTKSLRGKIGES
                     LKSVHDAPRLDQVSTASLGALRSYAAGLHANDIVGDYQSAVDYFHDAIRQDSTFAMAY
                     VQLAYSLQSVGGSRSLTEANDALAAAFRLRNRLPERERYNVEGAYYLGIGDRSKAIPA
                     FRHAVELDSTNYDAVNSLAVALQDTRDYTGAERTFRFAIKSDPTNTTILSNLAGEYSV
                     SGRQAAFDSMLGVIANSNARFPTAGIRINSLFIRRDYDAAERLARAVADSSKPSGAIF
                     AQDVLVAIAMVRGRLHEAERRYAQVNEAKARLRGDTVSSRNIALFHAMLDGQLRGDSS
                     RADEALDAVLRATPEASVPLAQDESLNLAFAYASLGAAAKARQTLSQHEARLDAMGRR
                     QDAVALARTRGMVALAEGRSDSAIAEFRTSDTEADGLPTSTCILCVPLFIGMAFDRSG
                     HADSARAYLTKYVDMVGTGHGTLDRYYLAPSLYRLGELYESAGDTKHATEYYGRFVDL
                     WKNADPELQPRVTEARKRIERMNRATQ"
BASE COUNT          322 a          608 c          582 g          324 t
ORIGIN      
        1 ctggaatgcg atcgtcggca acggcggcca ggagagcgca tgcggctggt gcaaggacaa
       61 atggggactg tcctggcaga tcacgccgat cgcgctgacg caggcgatca ccgatgccga
      121 tcccgccgcg gccaagcgcg cattcgacgc gatgatggag atggggaaga tcgacatcgg
      181 taaaatcgag gcagcgcgtc gcggcgtgag ctagcgtcgc acgtgcctca ctgcgtcgcg
      241 cgattcatcc gctcgatgcg ctttcgcgcc tccgtcacgc gcggctgcag ctccggatcg
      301 gcgttcttcc acagatccac gaaccggccg tagtactccg tcgcgtgctt cgtatctccc
      361 gcgctctcgt acagctcgcc cagacggtag agtgacggcg cgaggtaata gcgatcgagc
      421 gtgccatggc cggtcccgac catgtcgacg tacttcgtca ggtatgcgcg cgccgagtcg
      481 gcatggccac tgcggtcgaa cgccatgccg ataaagagcg gcacgcagag aatgcaggtg
      541 gatgtcggca atccatcagc ttccgtgtcg ctggtccgga actcggcgat ggcgctgtcg
      601 gacctgccct ccgccagcgc gaccatcccg cgcgtccgcg ccagggcaac ggcatcctgt
      661 cggcgcccca tcgcgtcgag ccgcgcttca tgctggctca aggtttgacg ggcctttgcc
      721 gcggcgccga gactggcgta ggcgaacgcc agattcaagc tctcatcctg cgccagcgga
      781 acagaggcct ccggcgtcgc gcggagcacg gcatcgaggg cctcgtccgc ccgagacgaa
      841 tcgccgcgca actgtccatc cagcatcgcg tgaaacaatg cgatattgcg cgaactcacc
      901 gtgtcgccac gcagccgagc cttcgcttcg ttcacctgcg cgtatcggcg ctctgcctcg
      961 tggagccggc ctcgcaccat cgcgatcgcc accagcacgt cctgagcgaa aatggctccg
     1021 gacggcttgc tggagtccgc caccgctcgc gcaagccgct ccgcggcatc gtagtcgcgc
     1081 cgaatgaaca acgagttgat gcgaatgccg gcagtcggga accgcgcgtt gctgttcgcg
     1141 atcaccccca gcatcgagtc gaatgctgcc tgccggccgc tgacggaata ctctcctgcg
     1201 agattcgaca gaatcgtggt gttcgtcggg tcgctcttga tcgcgaaccg aaaggtccgc
     1261 tcagcgccag tgtagtcgcg cgtatcctgc aacgcgacgg ccaacgagtt gacggcgtcg
     1321 tagttcgtgg agtcgagctc caccgcatga cggaacgccg ggatcgcctt cgagcgatcg
     1381 ccgattccca agtagtatgc cccctccaca ttgtaccgct ctcgctccgg caggcgatta
     1441 cgaagtcgaa aggcggcagc gagcgcatcg ttcgcttcgg tcaggctgcg cgagccgccg
     1501 accgattgca gcgagtaggc gagctgcacg tacgccatcg cgaaggtact gtcctgtcgg
     1561 attgcatcgt ggaagtagtc gaccgcgctc tgataatcgc cgacgatgtc gttcgcgtga
     1621 agaccggccg cgtagctgcg aagcgcgccg agtgacgcgg tgctcacctg atcgagacgt
     1681 ggcgcatcgt gcaccgactt gagcgactcg ccgatcttgc cgcgaagtga cttcgtgagg
     1741 cggtccactg acgggatgag gtcgcccgca tccttggccg actcgtgata cgacgccagc
     1801 tcgtctccac tctctgctgc gacgagtctc gccgtg
//
LOCUS       DATIMD010000516         4656 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5123542, whole genome shotgun sequence.
ACCESSION   DATIMD010000516 DATIMD010000000
VERSION     DATIMD010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4656
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5123542"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..1041
                     /locus_tag="VLI40_11510"
     CDS             142..1041
                     /locus_tag="VLI40_11510"
                     /inference="COORDINATES: protein motif:HMM:NF005875.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyryl-CoA dehydrogenase"
                     /protein_id="HSU97849.1"
                     /translation="MSDKHNSIRTVAVLGGGLMGSGIAQVCAASGYMTTVREVSDEFC
                     DRARGAILRSFDRAIEKGKATGADKEAALKLIHFTTSLNDLASADIVIEAVVEDLAVK
                     SQMFSELDGLCGPNTIFASNTSSLTIGEIAAATSRADRFVGMHFFNPVPAMKLVEVVR
                     AIGTSPGTVERALAFVQSLGKEPISARDNSGFVVNLLLVPYMIDAIRALEAGVASIAD
                     IDKGMMLGAGYPMGPFTLLDFVGLDTTYKIAEIMYDEYRESRYAPPPLLKRMVIAGMY
                     GKKSGMGFYDYSKTPPVPNDLGI"
     gene            1058..2701
                     /locus_tag="VLI40_11515"
     CDS             1058..2701
                     /locus_tag="VLI40_11515"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HSU97850.1"
                     /translation="MSTVAPVRPESFRGIFRTDDAALAVYSEGAGIARILPRAVAVPA
                     DIDDVQTIVRWAHATSTPLIPRGSGSGMAGGAIGDGVIVDLSRMRGISPVDVANRTIS
                     VGPGVTWQEVETAARGAGLRFPPDPSSGAFCSIGGMVSTNASGAHSLKYGPTRKWVIA
                     LDCIFDDGTRATVRRGAPMPENVAALQRFWSITGALATADAVTPSIHAGVRKDSSGYG
                     IHAFAESDEVIDVIIGSEGTLAIVVGIELRLAPAPRATSSLLGSFRTLESAVSAAILA
                     RDAGAAACELLDRTFLDVAATAAPLPQIPSDSEAVLLAEVEGDSDDEARQAAESLAAA
                     FRSAGATSVELALTTQAEDEMWKLRHAASPILNRLGPSLTSMQFVEDGAVPPAKLPDY
                     VRGVREILAKYQVTGVIFGHAGDSHVHVNPLIDVNRAGWRDIVAGMLDDVVALTARLG
                     GTLDGEHGDGRLRTPLLSRVWSGEILRRFEAVKRAFDPSGIFNPGVKVAVAGERAITN
                     IKYDPELPQHPPAATAALTRVSDERAYAAFRLDLIDSVA"
     gene            2743..3492
                     /gene="thyX"
                     /locus_tag="VLI40_11520"
     CDS             2743..3492
                     /gene="thyX"
                     /locus_tag="VLI40_11520"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: protein motif:HMM:TIGR02170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0009265 - 2'-deoxyribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HSU97851.1"
                     /translation="MYYTEPRITVLSRPQFTEPAGLPVNWIGDSTDGERLAEFAGRLC
                     YMSQRNPASRSTREYLENIKKQGHGSVLEHANYSLLVEGVSRSLTHELVRHRAGMAFS
                     QLSQRYVDESEANFVVPPAIIGDDALRDAWQTQIDAAQSAYVALVEQLMQRYAWVADK
                     VHRRKMAREAARGVLPNSTETKIVVTANARAWRTLLELRSSEGAELEIRRWAVMVIRV
                     LQNEAPGFFSDFEIYQADDRREAARVTYHKV"
     gene            complement(3501..3893)
                     /locus_tag="VLI40_11525"
     CDS             complement(3501..3893)
                     /locus_tag="VLI40_11525"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU97852.1"
                     /translation="MDTSTQPWAIQRVGQIAINVHDVGSATSFYRDVLGMKFLFAAPP
                     GLAFFDCGGTRLMLTTPESPEHDHRSSVIYYVVPNIADAYRALSERGVSFEDKPHVVA
                     RLEKVEIWMTFLKDPDGNLLALMCEVSV"
     gene            4058..>4656
                     /locus_tag="VLI40_11530"
     CDS             4058..>4656
                     /locus_tag="VLI40_11530"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HSU97853.1"
                     /translation="MPIAALLCLLLGPGIIRAQTGADVVRGRVTDDSAHVIAGASVVV
                     TRGPDRLVEKSTSDSSGAFSLRFDPGTGDYLVYVSAPGFASARRRVQREGSERELVAN
                     FILKPDLAKLAAVNVKASKPVRATNDVNPYTPETGASEKWEDGVKGEVPPTTAGDLNA
                     IAGTMSNITMTGSGPSILGSGAESNLTTLNGMGMSAGSIP"
BASE COUNT          930 a         1420 c         1451 g          855 t
ORIGIN      
        1 gacggcatca cggattcgcc gagcgcatca cgctcgcact ggagcaggtg ctcgaccggc
       61 tggagtacgg cgaaacgcgt cgtcccgcca atttcttcga tgcgctggcc gcccagcgcc
      121 agctacgccg gtgacatacg catgagcgac aagcacaaca gcatccggac cgtcgcggta
      181 ctcggcggcg gactcatggg gtccggcatc gcacaggtgt gcgccgcaag tggatacatg
      241 acgaccgtgc gcgaggtttc cgacgagttc tgcgaccggg cgcgcggcgc aattctcaga
      301 tcgttcgaca gggcgatcga gaagggcaag gcgaccggcg cggacaagga agctgcgctc
      361 aagctgatcc atttcacgac ttcactcaat gatctggcca gcgccgacat cgtgatcgag
      421 gcagtagtcg aggatctggc cgtcaagtcg cagatgttct cggagctgga tgggctctgc
      481 ggaccgaata ccatcttcgc gtctaacacg tcgagtctga ctatcggtga gatcgccgcc
      541 gcgacatcgc gcgcggaccg gttcgttgga atgcatttct tcaatcccgt tccagcgatg
      601 aagctggtcg aggtcgtgcg tgcgatcggg acgagtcccg gaaccgtcga gcgtgcgctt
      661 gcattcgtac agtcgcttgg caaggaaccg atcagcgcgc gtgacaactc cggttttgta
      721 gtcaatctcc ttctcgtacc gtacatgatc gacgcgattc gcgcactgga ggcgggcgtc
      781 gcgtcgatcg cggacatcga caagggaatg atgctcggtg cgggctatcc aatgggtccg
      841 tttacgttgc tcgatttcgt cggactggat acgacgtaca agattgcgga gatcatgtac
      901 gatgaatacc gcgaatcacg ctacgcacca ccgccgctgc tcaagcgaat ggtgatcgcc
      961 ggcatgtacg ggaagaaatc aggaatggga ttctacgatt attcgaagac tccgcccgtt
     1021 ccgaacgacc ttggcatctg acgcacgtcg tgccagcgtg agtacagtcg ctccagtcag
     1081 gccggaatcc tttcggggga tatttcgcac ggacgacgca gcgctcgccg tgtactcgga
     1141 aggcgcgggc attgcgcgca ttctgccgcg tgcagtcgcc gtgccggcgg acatcgacga
     1201 tgtgcaaacg atcgtacgat gggcacacgc gacgagcacg ccgctcattc cgcgtggatc
     1261 cggaagtggg atggcaggcg gcgcaatcgg tgacggcgtg attgtcgatc tcagtcgcat
     1321 gcgcggaata tcaccggtcg atgttgcaaa tcgcaccatc tcggtcggtc ctggcgtaac
     1381 gtggcaggaa gtcgagaccg ccgcgcgcgg agcgggactt cgctttccgc ccgatccttc
     1441 cagcggcgcg ttctgcagca ttggcgggat ggtatccacc aacgcatcag gcgcgcattc
     1501 actcaagtac ggcccaactc gtaaatgggt gatagcactc gactgcatct tcgacgatgg
     1561 cacgcgtgcg accgtgcgcc gtggtgcgcc gatgccggag aatgttgccg cgctgcagcg
     1621 cttctggagc atcacgggcg cgctcgctac cgccgatgca gtcacgccgt cgatacatgc
     1681 gggggtgcgc aaggactcgt cgggatacgg catccacgcg ttcgcggaat ccgatgaagt
     1741 gatcgacgtg ataatcggaa gcgaaggcac gcttgcgatc gtcgtcggca tcgagctgcg
     1801 gctcgctccg gcaccacgcg ctacgagctc gctgctcggc agctttcgca cgctcgagtc
     1861 ggcggtttct gctgccatcc tggcacgtga tgccggagcc gccgcctgcg agttgctgga
     1921 ccgcacattt ctggacgtcg cggcaaccgc agcaccgctt ccgcagatcc cgtcggattc
     1981 cgaagcggtt ctcctggccg aagtggaagg cgatagcgac gacgaagcgc gtcaggcagc
     2041 tgaatcactt gccgcagcgt tccgatcggc tggcgcgaca tcggtcgagc ttgcgctcac
     2101 cacgcaggcc gaagacgaga tgtggaaact gcgccatgca gcgagtccga tcctcaaccg
     2161 gcttggccct tcgctcacat ccatgcaatt cgtcgaggac ggcgccgtgc ctccagcgaa
     2221 gctgcccgac tacgtgcgcg gcgttcgtga gatcctcgcc aagtatcagg tcaccggtgt
     2281 gatattcggc cacgccggtg attcacacgt gcatgtcaac ccgctcatcg acgtcaatcg
     2341 tgcggggtgg cgtgacattg tcgccggcat gctcgatgac gtcgttgccc ttacagcccg
     2401 acttggtggc acactggacg gagagcatgg cgacgggaga ttgcgtacgc ccttgctgag
     2461 cagggtatgg agcggcgaga ttctccgtcg cttcgaggcg gtgaaacgtg cgttcgaccc
     2521 ttcggggata ttcaatccgg gggtgaaggt cgccgtcgcc ggagagcgcg cgatcacaaa
     2581 cataaagtac gatccggaac ttccgcagca tccaccggca gcgacggccg cactcacgcg
     2641 ggtgagtgac gagcgtgcgt atgccgcgtt ccgcctcgac ttgatcgaca gcgtcgcgta
     2701 actttggcga gcgccgcaac tcaccctgac cgtccagcac acgtgtatta taccgagccc
     2761 aggatcaccg ttctctcgcg ccctcaattc accgagcccg ccggcctgcc cgtcaactgg
     2821 atcggcgaca gcacggatgg cgagcggctg gccgagtttg cgggacggct gtgctacatg
     2881 agtcagcgga accccgcgtc gcgcagcacg cgcgaatatc tggagaacat caagaagcag
     2941 ggccacggaa gcgtgctgga gcacgcgaat tattcgctgc tcgtcgaagg cgtgagccgg
     3001 tcgctcactc atgagctggt gcgacacagg gcgggaatgg cgttctcgca gctatcccag
     3061 cgctacgtgg acgaatccga agcgaacttc gtcgtcccgc ccgcaataat tggtgatgac
     3121 gcgctccgcg atgcatggca gacacagatc gatgccgcac agagtgcgta cgtagcactg
     3181 gtcgagcagc tcatgcagcg ctatgcatgg gtcgctgaca aggtgcatcg tcgcaagatg
     3241 gcgcgcgaag ctgcgcgtgg cgtgcttccc aattcgacgg aaacgaaaat cgttgttacc
     3301 gcgaacgcac gcgcgtggcg cacccttctc gagctacgct cgagtgaggg cgccgagctc
     3361 gagatccgcc gctgggcggt gatggtgatt cgcgtgctgc agaacgaagc gccgggattc
     3421 ttcagcgact tcgagatata ccaggctgac gaccggcgcg aggctgcgcg cgtgacgtat
     3481 cacaaggtct gacagaaacg tcaaacgctc acttcgcaca tcaacgcgag caggtttccg
     3541 tcgggatcct tcagaaacgt catccagatc tcgactttct ccagacgcgc gacaacgtgt
     3601 ggcttgtcct cgaagctgac gccgcgctcg gatagcgcgc ggtaagcatc agcaatgttc
     3661 ggcactacgt aatagatcac agagctgcga tgatcatgct cgggcgactc cggcgtcgtg
     3721 agcatgagcc gtgtgccgcc gcagtcgaag aacgcgagac cgggcggtgc ggcaaacagg
     3781 aacttcattc ccaacacgtc acgatagaaa ctggtcgcgc tgccaacgtc gtgaacgttg
     3841 atcgcgatct gccccacccg ctggatcgcc cagggctgcg tggaagtgtc catggccgaa
     3901 aatctacgag atagggactg aaaattcgaa tcagaccatt tacacgttcc gaacatcaaa
     3961 tagagggaac gcgagttcga tcatttcctg accctcgtct ggtaccaaac agctgatgtc
     4021 acgtatttgc tcttgcccac tacatctccg cagcagcgtg ccaatcgccg cgctactctg
     4081 cctgttgctc ggccccggga tcatccgtgc ccagaccggc gccgacgtgg tccgcggtcg
     4141 cgtgaccgat gactcggcgc acgtaatagc cggcgccagc gtcgtggtta cccgtgggcc
     4201 cgatcggctc gtggaaaaat cgaccagcga cagcagtggc gcattcagtc tacgcttcga
     4261 tcccggcacg ggcgattatc tcgtgtatgt cagcgccccc ggcttcgcgt ccgcgcgccg
     4321 ccgagtgcag agagagggga gcgagcgcga gttggtcgcc aacttcattc tcaagcccga
     4381 cctcgccaag ctcgccgcag tcaacgtgaa ggcatccaag cccgtgcgag cgacgaacga
     4441 cgtcaatcca tacactcccg aaacgggcgc gtcggaaaaa tgggaggacg gagtcaaagg
     4501 cgaggtaccg ccgacaacgg caggcgatct caatgccatc gccggcacca tgtcgaacat
     4561 aacaatgact ggatccgggc cttccatact tggctcgggg gcagaatcga atctcacgac
     4621 tctgaacggc atggggatgt cggcggggtc cattcc
//
LOCUS       DATIMD010000517         6913 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3959400, whole genome shotgun sequence.
ACCESSION   DATIMD010000517 DATIMD010000000
VERSION     DATIMD010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6913
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3959400"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..467)
                     /locus_tag="VLI40_11535"
     CDS             complement(<1..467)
                     /locus_tag="VLI40_11535"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSU97854.1"
                     /translation="MIASIQSIIAVFLAAGAALPTAAGAQTTPSPAMAAGLASADSLV
                     QSAIASNLIPGAVLVVSQNGKVLQNRAFGYAELYDFNLHRLANPRVMHTSTMFDLASV
                     TKVMATTFAVMMLVDRGKVDVDAPVYTYLPDFRGPHLDSITVRNLLTHSAGLV"
     gene            583..1116
                     /locus_tag="VLI40_11540"
     CDS             583..1116
                     /locus_tag="VLI40_11540"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSU97855.1"
                     /translation="MAVPPDAEIIASVVDGDIDAFTILVQRYRDLCFRFALRILGNRD
                     DAEEALQDAFVRAFRALPMCRDRARFGAWLYQILVNECRTRATRTARRDRLLVDVTPD
                     VADPASHDDSAVSEEIEYALAQLVPEQREVFLLRYVEELGYEEISEITGVGISALKMR
                     AKRGCERLRELLEGVVR"
     gene            1131..1799
                     /locus_tag="VLI40_11545"
     CDS             1131..1799
                     /locus_tag="VLI40_11545"
                     /inference="COORDINATES: protein motif:HMM:NF027875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoamylase early set domain-containing protein"
                     /protein_id="HSU97856.1"
                     /translation="MEHEGDEPSPEDADFARQLGSILRTSESPRPGFDERVRAAIQDS
                     QLSPTSQAAPSAATVLGLEPRVTPLAAWRRRRSVSLPPVAWGALAAGFAALVSLGTLS
                     VARHGNQTLHSPGADAVQPAPVRQAAATPSHDTVYVVRFVLADASAHTVSLVGDFNAW
                     ARRATPLVAVKPGVWSAQVALPAGRHEYAFVVDGKHWVADPASVRVADEFDTPSSVVT
                     VGSD"
     gene            1825..3003
                     /locus_tag="VLI40_11550"
     CDS             1825..3003
                     /locus_tag="VLI40_11550"
                     /inference="COORDINATES: protein motif:HMM:NF027875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen-binding domain-containing protein"
                     /protein_id="HSU97857.1"
                     /translation="MTIATIITNSHFAHLLRKRSLGLLAVLVTSWGVPTAAGAQRIVS
                     SLDVQETQLRYADSLNAAATGITPSLRLGWDNAAVVASGTFAQLARSWSTNGSVGASL
                     FTPSAGAFSAELAGTLGGSAHQDGARTSAVIGMGRLHLDATSGGAWAGAGGGSTSDGL
                     RSRSVREGEIGLWYASGPVDATLTAQPTVVDDSIRYTDMTAEGQWRVGMLDLGAVAVK
                     RAGSRLPSFTQNPSVWGSVSAAAWLLPRVALLASAGTYPVDYTQGFPGGVFASVGVRI
                     SLTRAARTIPSRLTLEPVASAASVSELELQGSAGGRRILRLKVPGARTVEVTGDFTGW
                     APHMLSRQAGGWYSLDMPLSPGTYQMNVRINGGKWLPPPSLTTVTDEFGGLTAVLIVP
                     "
     gene            3202..3936
                     /locus_tag="VLI40_11555"
     CDS             3202..3936
                     /locus_tag="VLI40_11555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97858.1"
                     /translation="MSNSIIALVLLASSAIATAQSSAVDPSTRLAAVLPKDVAQHVLA
                     LVDAARAENLPADALLNRSLKFAARGVAAPDIARAADEQLVRMRSAKEALRTARSAPP
                     TGDEIEAGAEALREGVSGPDVSKLAQSAPSGRSLAVPLYVIGSLVSRGLPSDQALQRV
                     QSKLAARASDADIEASGRDNAVASGNHPNQGRGNGVGGGRAAGESGAGAAAHGPPAGV
                     PGNAGTHGRGNGATHGNASPNGKGRP"
     gene            4013..4963
                     /locus_tag="VLI40_11560"
     CDS             4013..4963
                     /locus_tag="VLI40_11560"
                     /inference="COORDINATES: protein motif:HMM:NF025679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4382 domain-containing protein"
                     /protein_id="HSU97859.1"
                     /translation="MSRHITSHSVVALALCATTALAGCSSGSDSGLSPSTSGSVSIAL
                     TDAPFPFDSVARADLFVVRIDGRIADVDSASADSGKDDDSNSNTDPSHDWVTLATPNQ
                     AFNLLDLQGGKSVNLAQPTLPTGTYRGFRLVLDVDKSSITLKNGVVLSGANGGIKFPS
                     AGRSGIKINLAQPFSVVSGKSQMIIDFDLGRSFVMRGNSIGRNGLIFKPVIRATGVEE
                     TGGISGTVHDSTATGTPAANASVEILKAGTVLTDTVSANVIATTTSDANGVYSAMWLQ
                     PGTYAVRATPPTGSLNHPALVAAVTVTSGKTTSGVDVVLP"
     gene            complement(4998..5861)
                     /locus_tag="VLI40_11565"
     CDS             complement(4998..5861)
                     /locus_tag="VLI40_11565"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSU97860.1"
                     /translation="MSLPDANDSSAVVNHYAATSLRTRIGDALELAGLAGLAGDHDLI
                     NWKDLAPLDEFHVRGLAASEELAAGLQLAPGATVLDVGSGLGGPSRFLAATYGVHVTG
                     IDLSPPFVEAATMLSERTGLSDRTTFQVADALTLPFEDSSFDHAWTQHVAMNIRDRAR
                     LYAEVFRVLEPGGSFAIYDVIRGDGESLIFPVPWARDPDISFLLTSDAMRDVLVRTGF
                     DVVSWTDTTAVANEWIAKQRDAQSRAPSSPAIGLHLVTPPDFAVMMANLGRNLIERRA
                     LLLQAIVRRPM"
     gene            5965..6780
                     /locus_tag="VLI40_11570"
     CDS             5965..6780
                     /locus_tag="VLI40_11570"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HSU97861.1"
                     /translation="MQRFTPRLTRELATFLILTFGLSTIFYVLFARAGTLTAGGGSYV
                     LMLMWCPGVSALATRLIFQHNVRGEGWKWGPTRYEIAGYVLPIVYASVAYGAVWITHF
                     GGVDPTRFHASIWRFIILGILTSIVYALGEELGWRGFLVPKLAEGLTFTRTAFVSGII
                     WSAWHVPLIIFAGYNGGTPAAYSIACFAVLVIGISFPMAWLRLKSRSVWPTAIMHASH
                     NLFIQGFFDVVTVNTGPTKYLLSEFGAVLALVAVITGYIFWRLRYRLVDSTGS"
BASE COUNT         1275 a         2031 c         2240 g         1367 t
ORIGIN      
        1 tgtaccaacc ccgccgagtg cgtgagcaga tttcgaaccg tgatgctgtc gagatgcggt
       61 ccgcgaaagt cgggcagata cgtgtacacg ggtgcatcca cgtctacctt gccacgatcg
      121 acgagcatca tcaccgcgaa cgtcgtcgcc atcaccttcg tcaccgacgc gaggtcgaac
      181 atcgtcgacg tgtgcatcac gcgtggattg gcgagccggt gcaggttgaa atcgtacagc
      241 tcggcgtatc cgaatgcgcg gttctgcagc accttgccgt tctgcgacac gacgagcact
      301 gcgccgggga tgagattgct ggcgatcgcc gactggacaa gcgaatccgc gcttgcgagt
      361 ccggcagcca tcgctggcga cggcgtcgtt tgcgcgccgg cagcggtggg tagcgccgcg
      421 ccggctgcga ggaagactgc aataatcgac tggattgacg cgatcatcgg actgtacgga
      481 atagggcgta gacctggaaa tgaacatggc gattgcgccg gctaattacc agcgcatcag
      541 gtgtgaccgg ccgcgcgagg gactagtcta tatatcatgg aagtggcggt tcccccagac
      601 gccgaaatca tcgcctcggt ggtggacggc gatatcgatg cgttcacgat cctggttcaa
      661 cgatatcggg acctgtgctt ccgctttgcg ctgaggattc ttgggaatcg ggacgacgcg
      721 gaagaagctc tacaggacgc gttcgtccgc gcctttcgtg cgctgccaat gtgccgggac
      781 agggcgcggt tcggggcgtg gctgtatcag attctggtca acgagtgccg tacacgagct
      841 acacgtacgg cgcgccgcga ccggctgctc gtagacgtga ctccggatgt tgccgatccg
      901 gcgtcgcacg acgactcggc ggtcagcgag gagatcgaat acgctcttgc gcagctcgta
      961 cccgagcagc gcgaggtgtt tctcctcaga tacgtcgaag agctgggcta cgaggagata
     1021 tcggaaatca ccggcgtcgg aatctcggcg ctcaaaatgc gagccaaacg aggttgtgag
     1081 cgacttcggg aactgctcga gggagtggtg cggtgaggat ccattcgaaa atggaacacg
     1141 aaggcgacga gccgagtccg gaggatgcgg atttcgcgcg tcagctggga tccattctgc
     1201 ggacgtccga aagtccgcgg cccggtttcg atgagcgtgt gagagccgcc attcaggact
     1261 cgcaactctc cccgacttcg caggccgctc cgagcgcagc tacagtgctg gggctcgagc
     1321 cgcgggtgac gccgctcgct gcctggcgca ggcgacgttc cgtttcactt ccgccagtcg
     1381 cctggggtgc gctcgctgcc ggctttgcag ctctggtcag tctcgggacg ctctcggtag
     1441 ctcggcatgg caaccagaca ttgcattcgc caggtgccga tgcggttcag ccggcgccag
     1501 tgcgtcaggc cgcggcgacg ccttcccatg atactgtcta cgtggtgcga ttcgtcctcg
     1561 cggacgcctc ggcgcacacg gtcagtctgg tcggagactt caatgcatgg gcgcgccgcg
     1621 cgaccccgtt ggtcgcggtc aagcccggcg tctggagcgc tcaggtggcg ctccccgcag
     1681 gacggcacga gtacgcgttt gtggtcgatg gcaaacactg ggtcgccgat cccgcctcgg
     1741 tacgcgtggc agacgagttc gataccccga gttccgttgt cacagtcgga agcgattgat
     1801 ctgccagaat agcgccatca tagcgtgacc atagcgacaa ttatcacgaa ttcccacttc
     1861 gcgcatttgc tccgcaagcg aagcctgggt ctccttgctg tgctggtaac gagttggggt
     1921 gtccccaccg cggcgggcgc tcagcggatc gtttcgtcgc tcgacgtgca ggagacacag
     1981 ctgcgctacg cggattcgct gaacgcggcg gccaccggaa tcacgccatc tcttcggttg
     2041 ggctgggaca atgctgccgt ggtggcgtcc ggaacctttg cccagctggc gcgatcctgg
     2101 agcaccaatg gctcggtggg cgcatcgctg ttcacgccgt cggccggcgc attctcggca
     2161 gagcttgccg ggacgctggg aggaagcgct catcaggacg gcgcccgcac cagcgcggtg
     2221 atcgggatgg gtcgtctgca tctggatgcc acaagcggcg gtgcctgggc cggcgctggc
     2281 ggcggttcca cctcggatgg cttgcgctct cggagcgtgc gggagggaga gatcggtctc
     2341 tggtacgcca gcgggccagt cgatgcgacg ctcaccgcgc agccgaccgt ggttgacgat
     2401 tccattcgct acaccgacat gacggcggaa gggcagtggc gggttggcat gctcgacctg
     2461 ggcgcggtcg cggtgaagcg tgcaggctcg cgccttccat cattcacaca gaatccgagc
     2521 gtctggggca gcgtaagtgc agccgcgtgg ctgctcccac gcgtggccct gcttgcgagc
     2581 gccggcacgt atccggtgga ttacacgcag ggttttccgg gcggtgtctt cgcatcggtc
     2641 ggtgtgcgca tttctctgac gcgtgctgcg cggacgattc cgtcgagatt gacgctcgag
     2701 cccgtggcat cggcggcgag cgtctccgag ctcgagcttc agggcagcgc gggcgggagg
     2761 cgaatcctcc gcctcaaggt gccgggggct cgcaccgtgg aagtaacggg cgatttcacc
     2821 ggatgggcgc cgcacatgtt gagccgccag gccggcggat ggtactcgct cgatatgccg
     2881 ctgtcgcccg ggacctatca gatgaatgtc cggattaacg gcggcaagtg gcttccgccg
     2941 ccttcgttga cgaccgtaac ggacgagttt ggcggcctga cggccgtcct catcgtgcca
     3001 tgaccatcgc gatcgcgtca tgcagtgcgt tccaatcccg tcaaaatccc gttgcaacct
     3061 ggatgtgacc ggcccgggcg agcgtgcagt ctaatcgagt gaaggcttac atcagcggtg
     3121 acgcagtgtg cttcatcaca tgattggcca acgctcctgt ttcccaagag ttccgcgatg
     3181 agaatgcgtt caatcacgac agtgagtaac agcatcattg cactcgtgct acttgcgagc
     3241 tcggcgatcg cgactgcgca gagcagcgcg gtcgatccat cgactcggct cgcggcagta
     3301 cttccgaagg atgtcgcgca gcacgtcctg gcattggtcg atgccgcgcg cgcggagaat
     3361 ctccccgcgg acgcgttgct gaaccgatcg ctcaagttcg cggcgcgagg tgttgcggca
     3421 cccgacattg cacgcgcggc tgacgaacag ctcgtccgaa tgcgctcagc aaaagaagcg
     3481 ctccgaacag cgcgcagcgc cccgccaacc ggtgacgaga tcgaggccgg tgccgaggct
     3541 ttgcgtgagg gtgtcagcgg ccccgacgta tccaaacttg cgcagagtgc gccgagtggg
     3601 cgctcgctcg cggtaccgct gtacgtgatt ggaagtctgg tgagccgcgg cctgccgtcg
     3661 gatcaggcgt tgcagcgagt tcagagcaag ctcgcagcac gcgcatccga cgcggacatc
     3721 gaggcgtccg gacgcgacaa tgctgtagcc tcggggaatc atccgaatca ggggcgtggg
     3781 aatggtgtcg gcggtggtcg tgccgccggt gaatcaggag caggcgctgc ggcacatggg
     3841 ccacctgcgg gcgttcctgg taatgcaggt actcacggac gggggaatgg tgcaacgcat
     3901 ggcaatgcgt cgccaaacgg caagggccgt ccatgattgc aggaacgggc gctgattgtc
     3961 gcgctcgcgc ggatcattac aaacactttc acatttctgg agcgaagcat ctatgagtcg
     4021 tcacatcact tcccactctg tcgtcgcact cgcgttatgt gctaccacag ctcttgcagg
     4081 gtgcagcagc gggtccgaca gcggcctttc gccgtccacg tccggctcgg tttcaattgc
     4141 attgaccgat gccccgtttc catttgattc agtggcgcgc gccgacctct tcgtcgtgcg
     4201 gatcgatggc aggatcgcgg atgtggattc ggcgagcgcc gatagtggga aggatgacga
     4261 ctcaaattcc aacaccgatc cgtcgcacga ttgggtaacg ctcgcgacgc cgaatcaggc
     4321 gttcaatctc ctcgatctgc agggcgggaa gtcggtgaat cttgcacagc cgacgctgcc
     4381 gaccggaacg tatcgcggct tccggctcgt gctcgacgtg gacaagtcgt cgatcactct
     4441 caagaacggc gtcgttctga gtggcgcgaa cggtggaatc aaatttccga gcgctggacg
     4501 gagcgggatc aagatcaacc ttgcgcagcc gttctccgtt gtgagcggca agtcgcagat
     4561 gatcatcgat ttcgatctgg gacgcagctt cgtcatgcgc ggcaacagca tcggcaggaa
     4621 tggcctgatc ttcaagccag tgattcgcgc gaccggagtc gaggagaccg gtggaatttc
     4681 gggaacggtc cacgattcga cagctacagg aacgccagcc gcgaatgcgt cggttgagat
     4741 tctgaaggcc ggaacagtac tcacggacac cgtatcggcc aacgtgatcg cgacgaccac
     4801 ttccgatgcg aacggtgtgt actccgcgat gtggctgcag cccggaacct acgcggtgcg
     4861 tgcgactccg ccgaccggct cgctgaacca ccccgcgctc gtcgcggctg tgaccgtgac
     4921 atcgggcaag acgaccagcg gtgtcgatgt agtactgccg taacaggaag tttctacaga
     4981 agtttctaca gaagtttcta catcggacgt cgcacgattg cctgcagcag cagtgcgcga
     5041 cgttcgatga gattacgtcc cagattcgcc atcatgacgg cgaagtccgg tggagtgacg
     5101 aggtgaagtc cgattgcagg tgacgacggg gcgcgcgatt gcgcgtcccg ttgttttgca
     5161 atccactcat ttgccacggc tgtcgtgtcg gtccatgaca ccacgtcgaa tccagtgcgc
     5221 acgagtacat cccgcattgc gtcggacgtg agcagaaagc tgatatcagg atcgcgtgcc
     5281 catggaaccg ggaatatcag agactcgccg tcgccacgga tcacatcgta gatagcaaac
     5341 gatccgcccg gctcgagcac gcgaaagacc tctgcgtaga gtcgcgctct atcgcgaatg
     5401 ttcatcgcga cgtgctgcgt ccacgcatgg tcgaagctcg aatcctcaaa cggaagcgtg
     5461 agcgcgtcgg cgacctggaa cgtcgttctg tcggagagcc ctgtgcgctc ggacagcatc
     5521 gtcgctgcct cgacgaacgg cggactgaga tcgattccgg ttacgtgcac gccgtacgtc
     5581 gccgcgagaa agcgactggg gccgccaagc ccgctgccga cgtccagcac cgttgcaccg
     5641 ggcgcgagtt gcaggccagc cgcaagctct tcacttgccg caagaccgcg gacatgaaat
     5701 tcatccagcg gggcgagatc cttccagttt atgaggtcgt ggtcgccggc gagcccggca
     5761 agtccggcca gctcgagagc atcgcctatc cgggtcctga gcgacgtggc ggcgtaatga
     5821 tttacgacag ccgaggagtc gtttgcatcg ggcaggctca tctgtccgtc cagttgggtg
     5881 agattgagct aaaattatcg cggtttgcag aaccgtgggc atttgcaatc ctcagcaatc
     5941 ctcatttctt ccgccggaga gtcgatgcaa cgcttcaccc cgcgtctgac gagagagctc
     6001 gcgacatttc tgatcctgac gttcgggctc agcacgatct tttatgtgct gtttgccaga
     6061 gccggaacgc tgaccgctgg tggcggctcc tacgtgttga tgctgatgtg gtgcccggga
     6121 gtatcggcac tcgcgactcg cctgatcttt cagcacaatg ttcgtggtga aggatggaag
     6181 tggggaccga cgagatatga aatcgcggga tacgtacttc caatcgtcta cgcttcagtg
     6241 gcatacggtg cagtgtggat cacgcacttc ggcggcgtgg atcccactcg ttttcacgcg
     6301 tcgatctggc gcttcatcat tctcggaata ctgacgagca tcgtctacgc acttggcgag
     6361 gagctcgggt ggcgcggctt tcttgtgccc aagctggcgg aaggactgac gttcacgcgc
     6421 acggcgttcg tgagtggaat catctggtcc gcgtggcacg taccgctgat catcttcgcc
     6481 ggttacaatg gcggcacacc ggcggcatac tccatcgcgt gctttgcggt tctggtcatc
     6541 gggatcagct tccccatggc atggctgcgt ctcaagtcac gaagcgtatg gccgacggcg
     6601 atcatgcacg cgagtcacaa tctcttcata cagggattct tcgatgtcgt gacggtgaac
     6661 acgggtccta cgaaatacct gttgagtgag tttggtgccg tgctcgcgct cgtagcggtc
     6721 atcacgggtt atatcttctg gaggctgcgt taccggcttg tcgattccac tggaagctga
     6781 acgtaggacg gagattgcgc cgagtggaag atgcgcatgg tcgcagcctt gaagtcggag
     6841 tccttcgcat caaagatgtt gggaacgaag gtctgcggat tccggtcgat gagcgggaac
     6901 catgtactct gca
//
LOCUS       DATIMD010000518         2276 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4251983, whole genome shotgun sequence.
ACCESSION   DATIMD010000518 DATIMD010000000
VERSION     DATIMD010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4251983"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(38..739)
                     /locus_tag="VLI40_11575"
     CDS             complement(38..739)
                     /locus_tag="VLI40_11575"
                     /inference="COORDINATES: protein motif:HMM:NF014713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HSU97862.1"
                     /translation="MDLSQIGMRLSQSPATAIPILFFTGVLTSLTPCIYPMIPITAAI
                     VGGQSVGRSTRRGVALTLLYVLGLSLVYALLGLLAGLTQTLFGTVSASPWAALVTGNL
                     LLLFGLWMLDAIPIRIPSALLGGGRTESVTSLGGAFIMGCASGLVAAPCSAPVLAAVL
                     TWVAVTKSAVLGFIYLFVFSIGMCALLVVVGIFGATFARLPRSGMWMVWVKRVLALVM
                     FGAAEYYFVHAGLTM"
     gene            complement(772..1359)
                     /locus_tag="VLI40_11580"
     CDS             complement(772..1359)
                     /locus_tag="VLI40_11580"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HSU97863.1"
                     /translation="MTMLRIMKFPAIAMLMAAPFCLQAQGSMGGMAMADAHASSTPDV
                     GMMAPDFTAQGADQSGVHPVSLSSLRGHVVVLAFYPADRSSGCTHELNKFRDEYSQIF
                     GSDVTVLPISLDSLQSHVSWAKDSKFPFTLVADNGGKIASTYGSLMSGRPYASRTVFV
                     IGKDGKIVSRNMKFGALDQHAYDDLTAAIAKARAE"
     gene            complement(1425..1973)
                     /locus_tag="VLI40_11585"
     CDS             complement(1425..1973)
                     /locus_tag="VLI40_11585"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HSU97864.1"
                     /translation="MILQLSFPTPVRRMFHGILHGTLHLALGAALLVVARPVAAQSGE
                     GIAVGAMAPAVTVADASGETVRVTPTIGRPMLIEFWATWCEFCERLEPTMKATYSKYG
                     DKVQFAAIAVNVNQTPRRVAKHVKDRSLKYPVYYDDSGKATDAYDVAATSFVVIIDKK
                     GRVAYTGVGDKQNLDAAIRGVL"
BASE COUNT          482 a          723 c          668 g          403 t
ORIGIN      
        1 ccatgcgcgg ccttgcttat caagacggta tctgacccta catcgtcagg ccggcatgca
       61 cgaagtaata ctccgccgcg ccgaacatca cgagcgccag cacgcgcttg acccacacca
      121 tccacatccc tgacctgggc aatcgcgcga acgttgcacc gaatattccg acgacaacca
      181 gcagcgcgca cattccgatc gagaatacga acaggtagat gaagccgagc accgcgctct
      241 ttgtcaccgc cacccatgtg agaaccgcgg cgagcactgg tgcggaacag ggtgcggcaa
      301 cgagtcccga tgcgcatccc attatgaaag cgccaccgag tgatgtgacg gattcggtgc
      361 gtccgccgcc gagcagtgcg gatggaatcc ggatcggaat tgcgtcgagc atccagagtc
      421 cgaagagcag cagcaggttg ccggtaacga gcgctgccca tggactcgcg ctcaccgttc
      481 cgaacagtgt ctgggtgagg cctgcgagca agccgagcag cgcgtaaacc agcgacagtc
      541 ccaggacgta cagcaacgtc aatgcgacac cgcgccgcgt gctgcgaccg accgattggc
      601 cgccgactat tgcggcggtg atcggaatca tggggtagat gcacggcgtc aggctggtaa
      661 ggacgccggt gaagaacagg atcggaatgg ctgtcgcggg actctgcgac agccgcattc
      721 cgatctggga cagatccact ccgtgctagc tacggaatct ctgctgtggt gctattccgc
      781 ccttgccttt gcgatcgcgg cggtcaggtc atcgtacgcg tgctgatcga gagcgccgaa
      841 cttcatgttg cggctcacga tcttgccgtc cttgccgatg acgaacacgg ttctgctggc
      901 gtacggacgt ccactcatca acgagccata ggtgctggct atcttgccgc cattgtcggc
      961 aacgagcgtg aacgggaatt tcgagtcctt tgcccagctc acgtgcgact ggaggctgtc
     1021 gagggagatc ggaagcaccg tcacatccga tccgaagatc tgcgaatact catcgcggaa
     1081 cttgttgagc tcgtgcgtgc agccgctcga gcgatcggcc ggatagaacg caagcactac
     1141 cacatgtccg cgcagcgagc tcagggagac tggatgcacc cctgactgat ccgcaccctg
     1201 cgccgtgaag tcgggcgcca tcatgccaac gtccggagtg gacgaagcat gtgcatcagc
     1261 catcgccatc ccacccatcg acccctgagc ctgcaaacag aacggagctg ccatcaacat
     1321 cgcgatcgcc gggaacttca tgatccttaa cattgtcatc gactcgctgc tggagagtta
     1381 cggacgaact acggaatgaa ttggaaaatc gactaccgca ctgcctacag aacgccgcgg
     1441 attgccgcgt ccagattctg cttgtcacca acacccgtgt atgcgaccct tcccttcttg
     1501 tcgatgatca cgacgaacga cgtggctgcg acatcatacg catccgtcgc cttgccgctg
     1561 tcgtcgtagt acacgggata cttgagtgac cggtccttca cgtgctttgc cacccgcctg
     1621 ggcgtctggt tcacgttcac ggcgatcgcc gcaaactgga ccttgtcgcc gtacttgctg
     1681 tacgtcgctt tcatcgtggg ctcgaggcgc tcgcagaatt cgcaccacgt cgcccagaac
     1741 tcgatcaaca tgggacggcc gatcgtcggc gttacacgaa cggtttcccc cgatgcgtcc
     1801 gcgacggtca cggctggcgc catcgcgccg accgcaattc cttcacccga ctgcgccgcg
     1861 accggcctgg cgacgaccag cagggcggca cccagggcga ggtgaagggt gccgtgaagg
     1921 atgccgtgaa acatcctgcg tacgggagtc ggaaacgaga gctgcaatat catgatgggc
     1981 ccacagtgcg aagatacacc acaagctata aatatggcct ctgaaccgcg ccatctgggg
     2041 taacgcccgc agacgacggc tatggcgcgg cgagcggccg atacagatgg ttaaacgcaa
     2101 cgctgaccaa cgcctgggcg tcggtcgagc gccacccagg atgcccgatc aggacagccc
     2161 gaaccgatcc agcccttcgc ggtaacggcg gctcaatctc gtctgcgagc cgtcgcgcat
     2221 cacgacgacg taatcgccgt gcgaccaggg ccggagctcc gcgatgcgat cgagat
//
LOCUS       DATIMD010000519         6103 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1078238, whole genome shotgun sequence.
ACCESSION   DATIMD010000519 DATIMD010000000
VERSION     DATIMD010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6103
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1078238"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1356
                     /gene="thrS"
                     /locus_tag="VLI40_11590"
     CDS             <1..1356
                     /gene="thrS"
                     /locus_tag="VLI40_11590"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HSU97865.1"
                     /translation="KHFKLMSTAGAYWRGDEKRQMLQRIYGTAWFRKEDLEAYLYRIE
                     EAKRRDHRRLGKELDLFQFHPIAPGAAFWTNRGTIIYNGLVDFMRGKLRVAGYDEVKT
                     PLLYHKTLWEQSGHWGKYKENMFLVLDNETGEHDFSLKPMNCPSHHVLYGSRKHSYRE
                     LPVRYATQDVLHRNEISGALSGLTRVRQFQQDDAHIYLAESQITDEVKSLVEMVNDCY
                     GAFGLSYTAKFATRPGPEFRVGTDEMWDRAEESLRAALINTGLPYELKEGDGAFYGPK
                     IDFDVTDSIGRQWQLGTIQLDYANPERFDLSYTGEDNQPHRPVIIHRAILGSFERFIA
                     ILIEHFAGAFPLWLAPEQVRIVPISDAQFEAARVVRDALVDAGVRAHLDDRNQTLNYR
                     IREAETLKVPYMAVVGGREAEQGSVAVRTRGAGSKQEVTPLADFVRRVQSEIASRSLT
                     P"
     gene            1427..2635
                     /locus_tag="VLI40_11595"
     CDS             1427..2635
                     /locus_tag="VLI40_11595"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HSU97866.1"
                     /translation="MSDLTRQPVIVSAARTPVGRFLGGLAPLSATELGAIAIRAALSR
                     AGVSPSDVGNVIMGNVLQAGVGQAPARQAALKAGLPGTVSALTVNKVCGSGLEAVMLA
                     AASIKAGDEQVVVAGGMESMSNTPYYVSGYRGGVKFGDQTMVDGLIKDGLWCSFCDVH
                     MGSHADYTARKAGVTREDQDVFAALSHSKAVAAIEAGKFKAEIVPVEIAGRKGTTTVD
                     TDEGPRKDTTVETLAKLRPAFPVKGKSDELTVTAGNASTLNDGAAAVVVVSEQFAIDH
                     KLEILARITGYATGGGEPQDLFFAPIVAVEKLMAKTGAKIGDYDLIEANEAFASQSIA
                     DARGLAWDTARVNVNGGALALGHPLGASGARILTTLLYALKDRGKRTGLATLCLGGGN
                     AVAMSVERPS"
     gene            2639..3538
                     /locus_tag="VLI40_11600"
     CDS             2639..3538
                     /locus_tag="VLI40_11600"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HSU97867.1"
                     /translation="MDARSLVFASQSERKLRAPWRILIFLTVWVAVTLVAAVLVQSLQ
                     GAQGTPGTALAGWRMIADYWINLLAILVATFVSLRWVDGVDWNFVRLGRSSSQPALLS
                     SGFLMGMIAIGAPCVVLLATHELRIVPAAEGNWAVAAAQMGLLLLPAAAVEELLMRGY
                     VFAVLRETVGWKTTLVATSIVFGLLHLRNPGADPETIVAVIIAGFFLGTILLVTESLY
                     AASMAHFAWNWTMAAGLHTAVSGLGVTAPNYQVIDNGPDWLTGGSWGPEGGVAAALGM
                     FVFLFYLHGRYRARLQGEALRNQ"
     gene            3598..4446
                     /locus_tag="VLI40_11605"
     CDS             3598..4446
                     /locus_tag="VLI40_11605"
                     /EC_number="1.1.1.157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyryl-CoA dehydrogenase"
                     /protein_id="HSU97868.1"
                     /translation="MSEKIAVIGAGQMGNGIAHVFAAASFPVTMIDVAQDALDRGKAT
                     IEKNLDRQLKKGTIDQAAKDATLSNVTLATDLAAASDASLIVEAATENVALKYRIFSD
                     LDKLAKPDAILASNTSSISITEIAAKTGRPEKVVGMHFMNPVPVMKLVEIIRGLATSD
                     ETTAKVIALSSALGKTPVEVNDYPGFVANRILMPMINEAVYCVMEGVGTPEAIDTVMH
                     LGMNHPMGPLTLADFIGLDTCVAILEVMHDGLGDPKYRPCPLLRKYVAAGWLGRKTGR
                     GFYKYA"
     gene            4439..5596
                     /locus_tag="VLI40_11610"
     CDS             4439..5596
                     /locus_tag="VLI40_11610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSU97869.1"
                     /translation="MLDLFPLTEEQREIQRVARDFAAAEIVPYSRQWDADSYFEPTLI
                     RKLGDLGFLGMLTAEEYDGLALDTVTYLVALEEIAAADASVAVMMSVHNSLPTQMLSS
                     FGSEEQKQRFLKPMARGELLGAFALSEPEAGSDAAALTTQAVRDGDDWVLNGTKAWVT
                     SGPYAGVILVQARTDTPDNRKGGRGIGAFIVTPDLPGFHVGKKEDKMGLRASPTVQLV
                     LDGLRVPGANLLGDPSMGYVYAMRSLNAGRLGIAAQALGIARAAFEAAVAYASERRQF
                     GEPIKDFQAIQFKLSNMATRISAARALLYAAARAKDANASSAKQAASMAKLFASETAM
                     WVTTEAIQVFGGYGYVKDYPVEKLFRDAKITEIYEGTSEIQRIVIARELYA"
     gene            5593..>6103
                     /locus_tag="VLI40_11615"
     CDS             5593..>6103
                     /locus_tag="VLI40_11615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HSU97870.1"
                     /translation="MKLFDTIAEMGHEQVVVCSDPSSGYRGIIAIHNTTLGPALGGTR
                     FWNYASDEDAITDALRLSRGMTYKNAVAGLNLGGGKSVIIGDNRTSRREMIFRAHGRF
                     VESLGGRYVTAEDVGTSTSDMDFVHMETDYVAGLAGKSGDPSPVTAHGVFRAIQASAM
                     YRWDSDDLEG"
BASE COUNT         1187 a         1765 c         2008 g         1143 t
ORIGIN      
        1 aagcacttca agctgatgag tacggcgggc gcgtactggc ggggagacga aaagcgccag
       61 atgctccagc gcatctatgg gacagcctgg ttccggaagg aagatctcga agcctatctc
      121 tatcgaatcg aggaagccaa gcgacgggac catcggcggc ttgggaagga gctggacctg
      181 ttccagttcc atcccatcgc gcccggcgcg gcgttctgga ccaatcgcgg gaccatcatc
      241 tacaacggtc tcgtcgactt catgcgtggc aagctgcgcg tagccggtta cgacgaggtg
      301 aagacgcctc ttctctatca caagacgctg tgggagcagt cggggcactg gggcaagtac
      361 aaggagaaca tgttcctcgt tctcgataac gagacgggtg agcacgactt ctcgctcaag
      421 ccgatgaact gcccatcgca ccacgtgctg tacgggagca ggaagcacag ttatcgcgag
      481 cttccggtgc gctacgcaac gcaggacgtg ctgcaccgca acgaaatttc cggcgcgctg
      541 tcgggactca ctcgcgtgcg ccagttccag caggatgacg cgcacatcta tctcgccgaa
      601 tcgcagatca ccgacgaggt gaagagtctg gtcgagatgg tgaacgattg ctacggagcg
      661 ttcggcctca gctacacggc gaagtttgcg actcgtcccg ggccggagtt tcgggtcggc
      721 actgacgaga tgtgggaccg tgcggaggag tcgttgcgcg ccgcgttgat caacaccgga
      781 ctgccttacg agctcaagga aggcgacggc gcgttctacg ggcccaagat cgacttcgac
      841 gtaacggatt cgatcgggcg ccagtggcag ctcggcacga tccagctcga ttatgcgaac
      901 cccgagcgct tcgatctgag ctacactggt gaagacaatc agccgcaccg gccggtcatc
      961 attcaccgcg cgattctggg atcgttcgag cgcttcatcg cgatactgat cgagcatttc
     1021 gccggcgcct ttccgctctg gctcgcgccg gagcaggtgc gcatcgtacc gatctcggac
     1081 gctcagttcg aggcagcgcg cgtagtacga gatgcgctgg tcgatgccgg cgtgcgcgcg
     1141 catctggacg accgcaacca gaccctcaac tacaggatcc gcgaagctga gacgctcaag
     1201 gttccgtaca tggcggtggt cggtgggcgg gaagcggagc aggggagcgt cgccgtgcgg
     1261 acacgcggcg cagggagcaa gcaggaagtc acgcctctgg ctgactttgt aaggcgcgtg
     1321 caatcggaga tcgcttcacg gtcgctcacg ccctgattcc gcgcgttcgc accgtccgca
     1381 cgctccattg gggaaaatcg ggagcgttcc gattagcttt ccatgtatgt cagaccttac
     1441 acggcaacca gtaatcgtat cggccgccag gacgcccgtc gggcgtttcc tgggcggcct
     1501 tgcaccactt tcggccacgg aactcggagc gatcgccata cgcgcggcgc tttcccgagc
     1561 gggagtttcg ccctcggacg tgggcaacgt cattatgggc aacgttctgc aggcgggagt
     1621 cggtcaggct cctgcgcgac aggcagcgct caaggcaggg ctgcccggca ccgtctcggc
     1681 gctcaccgtt aacaaggtgt gtggatcggg actcgaggcg gtgatgctcg ctgccgcgtc
     1741 catcaaggcc ggcgacgagc aggtcgtcgt cgcgggcggc atggaatcga tgtccaacac
     1801 gccgtactac gtgagcggct accgcggcgg cgtgaagttc ggcgatcaga cgatggtcga
     1861 cggattgata aaggacggat tgtggtgctc gttctgcgac gtgcacatgg gcagccacgc
     1921 cgattacacg gctcgcaagg cgggtgtgac gcgcgaggat caggacgtat tcgctgcgtt
     1981 gtcgcattcc aaggcagttg cggcgatcga ggccggcaag ttcaaggcgg agatagttcc
     2041 cgtcgagata gcgggtcgca agggcactac caccgtcgac acggacgagg gcccgcgcaa
     2101 ggatacaacc gttgaaacgc tcgcgaagct gcgtcctgca ttcccggtca agggaaagag
     2161 cgatgaattg accgtcacgg ctggcaacgc atcgactctc aatgatggtg cggctgcggt
     2221 ggtcgtcgtc agcgagcagt tcgcgatcga tcacaagctc gagatactcg cgcgcatcac
     2281 gggttacgca accggcggcg gcgagccgca ggacctcttc ttcgctccga tcgtcgcggt
     2341 cgagaagctg atggcgaaga cgggtgcgaa gatcggcgat tacgatctca tcgaagccaa
     2401 cgaggcgttc gcgtcgcaat cgatcgcgga tgcgcgcggg ctcgcgtggg acacggcgcg
     2461 cgttaacgtg aatggtggcg cgctggcgct gggtcatccg ctcggtgcga gcggcgcgcg
     2521 cattctcacg acgctcctct acgcgctcaa ggatcgcgga aaacggaccg gactcgcgac
     2581 gctatgcctc ggcggcggta atgccgtcgc gatgagcgtc gagcggccga gctgattgtt
     2641 ggacgcgcga tctctcgtat ttgcttctca gtcagaacga aagcttcgcg ctccgtggcg
     2701 gattctcatc ttcctgaccg tgtgggtcgc ggtaactctg gttgctgcgg tactcgtgca
     2761 gagtttgcag ggagcgcagg gaactccggg aacagcgctc gctggctggc gcatgatcgc
     2821 ggattactgg atcaacctgc tcgcgatact cgtagcgacg ttcgtgtcgt tgcggtgggt
     2881 ggacggcgtc gactggaact tcgtgcggct cggacgctca tcgtcgcaac ccgcgctgct
     2941 gagcagtggt tttctcatgg ggatgatcgc gatcggcgcg ccgtgcgtgg tgctgctcgc
     3001 gacgcacgag ctgcgcatcg ttccggcagc ggaagggaac tgggctgtcg cagcggcgca
     3061 gatgggattg ctgctgcttc ccgcggcggc ggtggaagag ttgctgatgc ggggctacgt
     3121 attcgcggtg ttgcgcgaga cggttggatg gaagaccaca ctcgtcgcga cgagcattgt
     3181 gttcggactg ttgcaccttc gcaatccagg cgcggatccc gagacgatcg tggcagtgat
     3241 catcgcggga ttttttcttg gcactatact gctcgtcacg gagagcctct acgctgcgtc
     3301 gatggcgcac ttcgcgtgga actggaccat ggcggccggt ctccataccg cggtgagcgg
     3361 gctgggtgtg actgcaccga actatcaggt gatagacaac ggaccggact ggctgaccgg
     3421 tggatcatgg ggtccggaag gcggcgtggc agccgcactg gggatgttcg tatttctgtt
     3481 ctacctgcat ggacgttatc gggcgcggct gcagggcgaa gcgcttcgta atcaataaaa
     3541 cggattcccg cgttcgcggg aatgacgatc ggaatcaatc gcacgaggat catatagatg
     3601 agtgagaaga tcgccgtcat cggcgctggc cagatgggta acggaatagc gcacgtgttc
     3661 gccgcggcgt cgttccctgt cacgatgatc gatgtagcgc aggacgcgct ggatcgcggt
     3721 aaggctacga tcgagaagaa cctcgatcgt cagctcaaga agggaaccat cgatcaggcc
     3781 gcgaaggacg ccacactgtc gaacgtcacg ctcgctaccg acctcgctgc tgcgagcgac
     3841 gcatcgctca tcgtcgaggc ggcgaccgag aacgtcgcac tcaagtacag aatcttctcc
     3901 gatctcgaca agctcgcgaa acccgatgcg attcttgcat caaataccag ctccatctcc
     3961 attaccgaaa tcgcggcaaa gaccggccgc cccgaaaagg tcgtcggcat gcacttcatg
     4021 aatccagtgc cggtgatgaa gctggtcgag atcattcgtg gtcttgcgac atccgacgaa
     4081 acgacggcga aggtgatcgc gctttccagt gcgctcggca agacgcccgt cgaggtgaat
     4141 gattatcccg gcttcgtcgc gaatcgcatc ctcatgccga tgatcaacga ggctgtgtat
     4201 tgcgtgatgg agggtgtggg tactccggaa gcgatcgaca cggtgatgca tctcggaatg
     4261 aaccatccga tgggcccgct cactctcgcc gacttcatcg gtctcgatac gtgcgtcgca
     4321 attctggaag tgatgcacga cgggctcggc gatccgaagt atcgcccctg tccgttgctc
     4381 aggaaatacg tcgcagcagg ttggttggga cgcaagacag ggcgcggatt ctacaagtat
     4441 gcttgatctc tttccgctga cggaagaaca acgcgagata cagcgcgtgg cgcgcgattt
     4501 cgcggcggcg gagatcgtac cttactccag gcagtgggac gccgactcgt acttcgagcc
     4561 gacgctgatc aggaaactgg gcgatctcgg atttctcggc atgctgaccg ccgaggagta
     4621 cgacggactc gcgctcgata cggtgacgta tctggtcgcg ctggaagaga tcgccgccgc
     4681 ggatgcatcg gtcgcggtga tgatgagcgt gcacaattcg ctgccgacgc agatgctgtc
     4741 gagttttgga agcgaggagc agaagcagcg ttttctcaag ccgatggcgc gcggcgagct
     4801 gctcggtgcc ttcgcgctgt cggagcccga ggctggatcg gacgcggccg cgcttaccac
     4861 gcaagccgtg cgcgacggcg acgactgggt tctcaacgga accaaggcat gggtcacgag
     4921 cggcccgtac gctggtgtga tcctcgtgca ggcgcgtacc gatacgcccg ataaccgcaa
     4981 gggcgggcga ggaatcggcg cgttcatcgt gactccggac ctgcccgggt ttcatgtcgg
     5041 gaagaaggag gacaagatgg gcctccgggc ttcgccgacg gtccagctgg ttctggacgg
     5101 actgcgcgtt ccaggtgcga acctgcttgg cgacccgtcc atgggctacg tttacgcaat
     5161 gcgctcgctc aatgcgggcc ggctcggaat cgcagcccag gcgttgggaa tcgcgcgcgc
     5221 agcgttcgaa gccgcggttg catacgcgtc ggagcgtcgg cagttcggtg agccgatcaa
     5281 ggactttcag gcaatacagt tcaagctgtc caacatggcg acgcgcatct ctgcagcgcg
     5341 cgcgctactc tacgcggccg cgcgcgccaa ggatgcgaat gcatcgagcg caaagcaggc
     5401 tgcgtcaatg gccaagctct tcgcgagcga aacggccatg tgggtcacca ccgaagcgat
     5461 ccaggttttt ggcggttatg gttacgtcaa ggattatccg gtggaaaagc tgttccgcga
     5521 cgcgaagatc acggagatct acgaaggcac gtcggaaatt caacgcatcg tcatagcacg
     5581 ggagctttac gcatgaagct gttcgacaca atcgctgaaa tgggccatga gcaggtcgtc
     5641 gtgtgctcgg atccgtcgtc tggatatcgc ggcatcatcg cgatacacaa cacgacgctg
     5701 ggccccgcac tcggtggcac tcgcttctgg aactacgcga gtgacgagga cgcgataacc
     5761 gacgcgctgc gcctctcgcg cggcatgacc tacaagaacg cagtcgccgg cctcaacctt
     5821 ggcggcggca agtcagtcat catcggtgac aatcgcacgt cgcgacgcga gatgatcttc
     5881 cgtgcgcacg gacggttcgt cgagagcctc ggcggacgct acgtgaccgc cgaagacgtc
     5941 ggcacgagca cgtccgacat ggacttcgtc cacatggaga ccgattacgt cgccgggttg
     6001 gcgggcaagt cgggcgatcc atcaccggtt acggcacacg gagttttccg tgccatccag
     6061 gcgtccgcga tgtaccgctg ggattcggac gatctggaag gga
//
LOCUS       DATIMD010000520         6167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_790809, whole genome shotgun sequence.
ACCESSION   DATIMD010000520 DATIMD010000000
VERSION     DATIMD010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6167
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_790809"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..278)
                     /locus_tag="VLI40_11620"
     CDS             complement(<1..278)
                     /locus_tag="VLI40_11620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97871.1"
                     /translation="MLVSALLVVVGVAGPAQPPRHPVTCFLANGDRLSGTLRSVSKTT
                     VRITHQSLGRLSLRRKSIAVCESSDSTALRRLGTLALAPLPEIPTTTVA"
     gene            complement(379..720)
                     /locus_tag="VLI40_11625"
     CDS             complement(379..720)
                     /locus_tag="VLI40_11625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97872.1"
                     /translation="MARSRGYLFTIVLTVATSAVAASAVACGPSGQDEQDQRRILAQH
                     TCEDAVRDQLSSRATAQFSTDAEHVYYDSLGGAGVTGTVSTASGQRNFACLLKPAADS
                     SWTLTAARLLN"
     gene            1065..2663
                     /locus_tag="VLI40_11630"
     CDS             1065..2663
                     /locus_tag="VLI40_11630"
                     /inference="COORDINATES: protein motif:HMM:NF013613.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HSU97873.1"
                     /translation="MSVGLGRQAGAQGPFLSRVQSINFGFAHAAGMLVISAACAIAAL
                     SCGGDSGTGPRSLRAPAPLAVIKFSRSVDTVSLQDTNTIGVAFLDSTGSPVIPTSTSW
                     TVADSTIAHVSPSGVVTGLRTGSTSVTVTADRVSASLPVLVTPPISRVRVLPGVLDLG
                     VGHTIATQAVAFSAAGDTLHGRSYTYTIDKPEVASVNLSGVVRGVAAGTATLTVTSGT
                     VSMSVPISVATLGVSGFQIDLRFVGNVSSAVKTAAALAAQRWETVISAPLIPYHVVTT
                     ANLCGARIPAVDTTETNMMIIIQSDSIDGRSNTVGLGGPCIIRDDAPQFTALGTITVD
                     SADVGSLAQQGLLVSMLTHEMGHVLGIGTLWSDGTVRDSVTYFPNTAAGLGGPDPVFI
                     GRAARVAAAELGFTADSSVGVPIENSGGDGTRDGHWRATVFGHELMTGTLHNGLDPLS
                     LVTIEALADFGYTVVPEAADDFSAANAFNPSVPVSPSASINVPTGPSAAMTIKETLLF
                     PRFTVSRSGTLHRIRGAPGPAAPK"
     gene            2734..4194
                     /locus_tag="VLI40_11635"
     CDS             2734..4194
                     /locus_tag="VLI40_11635"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P N-terminal domain-containing
                     protein"
                     /protein_id="HSU97874.1"
                     /translation="MPWQLRTSLITLCLLAAPTGLRAQISATEFAARRDSLATHVGNG
                     VVIAFGGRTPVTDFGPFYQLPAFHYLTNFDEADAAFVMVVRDGHASSSTLFLTPIDPR
                     TAFYYGRRPDSASVTRTLGVNARSFSALAAIADSLASSGLPVYTLADFSDADFARQDS
                     LTRGRMFVRTLAANHPGLVVRDAHPIVDALRARKSPAEIALLKRAAEISSAGHVAVLH
                     LPEPRHEYELKAALENTFTKLGGSRPAYGSIVGAGRDGTQLHYMLDSASARPGDLVVM
                     DAATEYQGYAADVTRTIPVSGKFTADQRVIYQLVRDAQAAAERNSKPGMSAAAATDSS
                     VAIRAAGLAKLGLIESVDAMFDPPWKVDCTAAPAQCRQSMLWMIHGIGHGLGLAVHDP
                     AQYYTGEKKFMKGDAFTIEPGIYISTAALDVLPDTPRNRAFIAHARAAAERYNNTGVR
                     IEDDYVITDRGLERMSSAPREISEIESIMKSRPARR"
     gene            4388..4840
                     /locus_tag="VLI40_11640"
     CDS             4388..4840
                     /locus_tag="VLI40_11640"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSU97875.1"
                     /translation="MRTRGLNVWIGIAGTSVLMACAAGGLHRSDESSGGTVTITREQI
                     ERSAATNAWELLKNDVRRYTYQEDRSGRPLRIVAQRGASSIILADSDAPMIIIDGARL
                     TDVSALTQLSAGAISSIEVLSGIRGSGSQGTNASAGVIYIHTREASSP"
     gene            complement(4926..>6167)
                     /locus_tag="VLI40_11645"
     CDS             complement(4926..>6167)
                     /locus_tag="VLI40_11645"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSU97876.1"
                     /translation="GAVGSFGGAFDGPGGDWQQVQMSASLSDEFINTETFPTRIETDQ
                     RAQTITNTSLGPLFLTLNQARAATERAVNAFKSLAKSKSDSTGFAESLALNGMVYILF
                     AENYCGSVPTSVQNPDGSFTFGVGLTTDQLSDSAISKFNQATTGGGSSLSASIKSLAA
                     VGLGRALLDKGNFAGAAAAVAGVPTTFQYIYTHSQTSGGQNNGTWALTSNVARFGEAD
                     RKGTNGLPYASDGDLKVKGAAADPRVADSVRSGTGLGFDGFTKQFVQAKYPSRTSSSV
                     IADGVEARLIEAEAALQGGSPTNALTILNALRSNAALLALRGYPTGSLPPLTLQATAA
                     AQRDQLFKERAYWLYLTSHRLGDMRRLIRQYGLGAEQVFPTGIYIHNGGNYGTDVNTP
                     VPQAEQNNPNYVAGSCKQNQA"
BASE COUNT         1142 a         1896 c         1965 g         1164 t
ORIGIN      
        1 gcaacggtcg ttgtgggaat ttccggtaac ggagcgagcg caagcgtacc caggcggcga
       61 agcgcagtgc tgtcgctcga ttcgcatacg gcgatgctct tccgcctcag cgacaggcgc
      121 ccgagggatt ggtgagtgat acgaaccgtc gtcttcgaga ctgatcgcag ggtgccactc
      181 aggcggtcgc cattggcgag gaagcaggta acgggatggc gcggtggctg cgcggggccg
      241 gcaacgccga caacgacgag cagtgcggag acgagcatgg caatgggact aggtcaaccg
      301 atgccggagc atcgtggcga tctgcaagct atacgggcgt cacggcccgc acaggctcag
      361 ttgaccgtca gcaggatatc agttgagcaa tcgcgccgcg gtgagggtcc agctgctgtc
      421 cgcggcgggc ttgagaaggc acgcgaagtt gcgctgtccc gaagccgtcg acactgtgcc
      481 ggtcacgcct gcgccgccga gcgaatcgta gtacacatgc tcggcgtccg tactgaactg
      541 cgcagtagca cgggatgaga gttgatcacg taccgcatcc tcgcacgtat gctgcgccag
      601 gatgcgtcgc tgatcttgct cgtcctgtcc cgaaggaccg cacgcgaccg cggatgctgc
      661 gaccgcggat gtcgctaccg tcagaacgat ggtaaaaagg tacccacgcg accgcgccat
      721 cgcgcctccg tcgggccggt tttgggactg cggtatggca gccccgatga tgcctctcgg
      781 gcttacgatc aagccgatcc cctggtaaca aatatgcgcc taaatcacgg attccgtgat
      841 cacggtgtcc gtgccgggat tcacctccgc gatccgccgg cttttatggg ttcttgcccg
      901 ccggtttgcc cagctttcgc cgattcgggc cgccagtact ggaacaaccg cgctgcctat
      961 ggttacgacg gcatatcgca gcagcggatt cggaattatc cttgccagac ggcgtgcggt
     1021 gcggcggctg acgaacgcgg cggcaactga tcggagaatt ggcaatgtcg gtgggtttgg
     1081 gtcgtcaggc tggagcgcaa gggccgttcc tttcgcgcgt tcagagcatc aacttcggct
     1141 tcgcgcacgc ggccggcatg ctggtgatat cggcggcctg cgcgattgcg gctctcagct
     1201 gtggcggcga ttccggtact ggaccgcgat cgttgagagc gcccgctcca ctcgcggtca
     1261 tcaagttcag tcggtcggtc gacacggtct cgctgcagga cacgaacacg atcggcgtcg
     1321 cgttcctcga ttcgactgga tcgccggtga ttcccacgtc gacgtcgtgg accgtcgcgg
     1381 attcgaccat tgcacatgtg tcaccttccg gtgtggtcac cggactgcgg accggctcga
     1441 ccagtgtcac tgtgaccgcg gaccgtgtct cagcctcgct tcccgtactg gtgacacctc
     1501 caatatcacg agtcagagta ttgcccggcg tgctcgatct cggagtcgga catacgattg
     1561 cgacgcaggc ggtggcgttc tccgcggccg gtgacacact gcacggaagg agctacacct
     1621 acacgatcga caaacctgaa gttgcgtcgg tcaacttgtc gggcgtagtg cgcggtgtcg
     1681 cggctggtac ggcgacactt acggtgacct cgggaaccgt ctcgatgagc gttccgattt
     1741 ccgtcgccac gctcggagtg tccggcttcc agatcgatct gcgatttgtc ggcaacgtgt
     1801 cgtcggcggt gaaaacggct gcggcgctgg ccgctcaacg atgggaaacc gtgatctccg
     1861 cgccgctcat tccataccat gtagtcacaa cggcgaacct ttgcggcgcc cgtatacccg
     1921 cggtcgacac gactgagacg aacatgatga tcatcattca gtcggactcg atcgacggcc
     1981 ggtcgaatac cgtcgggctc ggtggcccat gcataattcg cgacgacgca ccgcaattca
     2041 ccgcgctcgg caccatcacc gttgattccg ctgacgtcgg ctctctcgcc cagcaggggc
     2101 tgctggtttc gatgttgacc cacgagatgg gtcatgtgct cggaatcgga acgctgtggt
     2161 ccgatggtac agttcgcgat tcggtgacgt actttccgaa taccgcggct ggtcttggtg
     2221 gacctgaccc ggtgttcatc ggccgcgcgg cgagagtcgc cgcagcggag cttggcttca
     2281 ccgcggattc atcggttggc gtaccaatcg agaattcggg cggcgacggg acgcgcgacg
     2341 gccactggcg cgcgaccgta ttcgggcacg agttgatgac cggcacgctc cacaacgggc
     2401 tggatcccct gagcctcgta acgatcgaag cgctcgcaga cttcgggtat accgtggtgc
     2461 cggaggctgc cgacgatttc agcgccgcga atgcgttcaa ccccagtgtc ccggtgtcgc
     2521 catcggccag catcaacgta cccaccggac cgtcggcggc catgacgatc aaggaaacgc
     2581 tgctcttccc ccggttcacg gtgtcccgga gtggcactct gcacagaatt cgcggcgcac
     2641 cgggacctgc agctccaaag tgacgatttc attgccttga cgcggtgggg gcttgcggct
     2701 ctttttcgca caccccgaac cagagagcga tacgtgcctt ggcaacttcg aacgtccctg
     2761 atcacactat gcctgcttgc ggcgccgact ggattgcgcg cgcagatcag cgccaccgag
     2821 tttgcagcgc gacgtgattc gctggcaacc cacgtaggca atggcgtcgt aatagcgttc
     2881 ggcggcagaa cgccggttac cgacttcggg ccgttctatc agcttcccgc attccactac
     2941 ctcacgaact tcgacgaggc cgacgctgcg ttcgtgatgg tcgtgcgcga cggccatgca
     3001 agcagcagca cgctgtttct cacgccgatc gacccgcgca cagccttcta ctacgggcgc
     3061 cgcccggatt ccgcgagtgt aacgcgcaca cttggcgtca acgcgcgatc gttcagcgcg
     3121 ctcgcggcga tagccgattc gctcgcgtcg tccggactgc ccgtctacac gctcgcagat
     3181 ttctcggacg cggatttcgc gcgacaggac tcgctcacgc gcgggcgcat gttcgttcgc
     3241 acgcttgcgg cgaatcatcc ggggctcgtg gtgcgcgacg cgcatccaat cgtcgatgcg
     3301 ctgcgcgcgc gcaagagtcc ggcggagatc gcgttgctga agcgtgctgc ggagatcagc
     3361 tcggcgggac acgttgccgt gctgcacctg cccgagcccc gtcacgagta cgagctcaag
     3421 gctgcgctcg agaacacttt tacaaagctg ggtggctcgc gccccgcata cggatcgatc
     3481 gttggtgctg ggcgagatgg cacgcagctg cactacatgc tggacagcgc atcggctcga
     3541 cccggtgatc tcgtagtgat ggatgcagcg acggaatatc agggctacgc ggcggacgtt
     3601 acgcgcacaa ttcccgtgag cggaaaattc accgccgacc agcgcgtcat ctatcagctc
     3661 gtgcgcgacg cacaggcagc ggcggagcgc aattcaaaac cgggaatgtc ggccgcggcg
     3721 gcaaccgatt cttcagtggc gattcgtgcg gccggcctcg cgaagctcgg attgatcgag
     3781 agtgtcgatg cgatgttcga tccgccgtgg aaggtcgact gcaccgccgc gcccgcacag
     3841 tgcagacagt cgatgctctg gatgattcac ggaatcggtc atgggcttgg gctcgccgta
     3901 catgatccgg cgcagtatta cactggcgag aagaagttca tgaagggcga tgcattcacc
     3961 atagagcctg gtatctacat aagcacggcc gcgctggacg ttcttccgga cacgccaagg
     4021 aatcgcgcct tcatcgcaca cgcccgcgct gctgccgagc gttacaacaa tactggagtt
     4081 cgcatcgagg atgactacgt gataaccgat cgcggcctgg agcggatgag cagcgcgccg
     4141 cgtgaaatca gcgagatcga gagtatcatg aagagccggc cggcgagaag atagccgcag
     4201 ccgtccgccg ctatggagct accgcttaca cattgtttac accactcgcc cttgccatcg
     4261 gttggcgcgg ggcgaagatt ggcgcgtgcc ggaggaccgt cggccgcgta aggtcgcggt
     4321 cgtgtaagac cgcgccatca tgctcattgt acttgctgct gttccgactc ttcacacaga
     4381 gggtacgatg cgcacacgcg ggttgaatgt ctggatcggt atcgcgggaa cttcggtgct
     4441 catggcgtgc gccgccggcg gcctgcacag gagcgacgag agttccgggg gaacggtcac
     4501 gatcacgcgg gagcagatcg agcgatcggc cgcgaccaac gcgtgggagc tgttgaagaa
     4561 cgatgtgcgc cgatacacgt accaggagga caggtcaggc cggccgctgc gaatcgttgc
     4621 gcagcgcggt gccagctcga taattctggc cgactccgac gcgccgatga tcatcatcga
     4681 cggcgcgcgt ctgacagacg tcagcgcact gacccagctt tccgccggcg ccatatcgag
     4741 catcgaggtt ctgagcggaa tccgcggcag cggatcacag ggcaccaatg cgtcggctgg
     4801 cgtgatatac atccacacgc gcgaggcgtc gtctccctga tatagcaaaa cgcagacgca
     4861 gaaaacaaca gacggcggcc tacacatggt gcaggccgcc ctctgttgtt caggctacaa
     4921 gcagattacg cctgattctg cttgcatgaa cccgcaacgt agttcgggtt gttctgctcc
     4981 gcctgcggta ccggcgtgtt gacgtccgtg ccgtaattgc cgccgttgtg aatgtagatc
     5041 ccggtcggga agacctgttc cgcaccgagc ccgtactgac ggatcaagcg acgcatgtcg
     5101 ccgaggcgat gcgaagtgag atagagccag tatgcgcgct ccttgaagag ctgatcacgc
     5161 tgcgcagccg cagtcgcctg aagcgtcagc ggtggcaggg aaccggtcgg gtagccacgc
     5221 aacgcaagca gcgcagcgtt gctgcgaagc gcgttaagga tcgtgagagc gttggtcgga
     5281 cttccgccct gcagcgccgc ttcggcctcg atcagccgcg cttccacgcc gtctgcaatg
     5341 acgcttgacg acgtgcgcga cgggtacttg gcctggacga actgcttggt gaagccgtcg
     5401 aagccgaggc ccgttccgga acgaacgcta tcggcaacgc gcggatcagc ggcggcgccc
     5461 tttaccttga gatcgccatc gctggcgtaa ggaagaccat tggttccctt gcgatcggcc
     5521 tccccgaagc gcgcgacgtt ggacgtcagt gcccacgttc cgttgttctg gccaccactg
     5581 gtctgggagt gggtgtagat gtactggaac gtggttggga cgcccgcgac cgcggctgcg
     5641 gcgccggcga aattaccctt gtcgagaagc gcgcggccca atcccaccgc cgcgagagac
     5701 ttgatgctcg cactgagcga agatcccccg ccagtagtcg cctgattgaa cttcgatatt
     5761 gcgctgtcag acaactgatc agtggtcagg cccacgccga acgtgaacga gccgtcagga
     5821 ttctgaacac tcgtcggaac ggatccgcaa tagttctcgg cgaacaatat gtagaccatg
     5881 ccgttcagag ccagtgactc tgcgaagccg gtgctgtcgg atttggactt cgccagcgat
     5941 ttgaacgcat tgactgcacg ctccgtcgca gcgcgcgcct ggttgagtgt gaggaacagc
     6001 ggtccgagac tcgtgttggt gatcgtctgc gcgcgctgat ccgtctcgat gcgcgtagga
     6061 aatgtctcgg tgttgatgaa ctcatccgac agcgaggcgg acatctgaac ctgctgccag
     6121 tcgccgcccg ggccgtcgaa cgcgcccccg aaggagccga cggcacc
//
LOCUS       DATIMD010000521         2645 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1370210, whole genome shotgun sequence.
ACCESSION   DATIMD010000521 DATIMD010000000
VERSION     DATIMD010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1370210"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..558)
                     /locus_tag="VLI40_11650"
     CDS             complement(<1..558)
                     /locus_tag="VLI40_11650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSU97877.1"
                     /translation="MPYRSDFPLLAANPALHYLDSAASAQKPKVVLDAIRDYYERSYA
                     NPHRGAYALSVDATERYHLARSRIARFLGAADVDSLIFTRGTTEALNLIASSYSRSNT
                     LSNIRSGDEIVVTAMEHHSNFVTWQQTALATGARFRICELTPDGHIDLDMLASMLGPR
                     TRVVAFGHVSNALGTVNPVAQIAAMV"
     gene            647..2083
                     /gene="sufB"
                     /locus_tag="VLI40_11655"
     CDS             647..2083
                     /gene="sufB"
                     /locus_tag="VLI40_11655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HSU97878.1"
                     /translation="MSTAIESLVNREYQYGFVSDIESDTVAPGLSEDVIRTISAKKHE
                     PEWLLDWRLKAYRRWLTMKEPHWPNVTYPPIDYQAARYYSAPTSVKPLQSLDEVDPEL
                     VRTYEKLGISLNEQKFLSGVAVDAIFDSVSVGTTMKEELAAHGVIFCSFGEAVQQHPE
                     LVRKYLGSVVPYSDNFFAALNSAVFSDGSFCYVPKGVKCPMELSTYFRINAADTGQFE
                     RTLIIADEAASVSYLEGCTAPKRSTNQLHAAVVELVALDNATVKYSTVQNWYAGDAEG
                     KGGIYNFVTKRGKAAGVNSKISWTQVETGSAITWKYPSVLLVGDNSVGEFYSVAVVNN
                     RQQADTGTKMIHIGKNTKSTIVSKGISAGHGNNSYRGRVQVMPRATNARNYTQCDSML
                     IGNRCGAHTFPYIEVANRTATVEHEASTSKIGEDQIFYCKQRGISAEQAVSMIVSGFC
                     REVFQELPMEFALEAQQLLGITLEGSVG"
     gene            2281..>2645
                     /locus_tag="VLI40_11660"
     CDS             2281..>2645
                     /locus_tag="VLI40_11660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSU97879.1"
                     /translation="MLDITSLRAGIAEREILKGIDLNIKPGEVHAVMGPNGSGKSTLA
                     QVLAGNPAYEVLGGSAKYDGEELLEMDPEVRAQKGIFLAFQYPVEIPGVTNAYFLRSA
                     YNEIRKARGEEEVDPLEFL"
BASE COUNT          573 a          801 c          809 g          462 t
ORIGIN      
        1 caccatggcg gctatctgcg ccaccgggtt caccgtacca agagcgttgg agacgtggcc
       61 gaaggcgacc acccgggtcc ggggcccgag catggaagcc agcatgtcca gatcgatgtg
      121 gccatcgggg gtgagctcgc agatccggaa ccgggctccc gtcgcgagcg ccgtctgttg
      181 ccaggtgacg aagttggaat gatgctccat ggcggtgacg actatctcgt ctcccgaacg
      241 aatgttcgac agcgtattcg aacgactgta cgaagatgcg atgaggttca gcgcctcggt
      301 cgtcccgcgg gtgaaaatca gcgaatccac atccgcggcg cctaggaacc tggcgatccg
      361 cgagcgggca agatgatacc gctccgtagc atccaccgac agcgcatatg ctccccggtg
      421 cgggttggcg tagctgcgct cgtagtaatc gcggatcgcg tccagaacga ccttcggttt
      481 ctgggccgaa gcggccgaat cgagatagtg cagcgccgga ttggcggcca gcagagggaa
      541 gtctgagcgg tatggcatgg gtttatctac aaaaagccga caaaatcact tacctttaca
      601 tcaatctacg cgaaagtgta gtaacgccaa ggagttagac gcaggaatga gcaccgcaat
      661 cgagtcactc gtcaaccgtg agtaccagta cggcttcgta agcgacatcg agtcggacac
      721 tgtcgcgccg ggtctgagcg aggatgtaat ccgtacaatc tccgcgaaga agcacgagcc
      781 cgagtggctg ctcgactggc gcctcaaggc gtaccgtcgc tggctcacga tgaaggagcc
      841 gcactggccc aacgtcacct atccgccgat cgactaccag gccgctcgct actactcggc
      901 gcccaccagc gtcaagccgc tgcaatcgct cgatgaagtc gatccggagc tggtgcgcac
      961 gtatgagaag ctcggaatct cgctcaacga gcagaagttt ctctccggcg tagccgtcga
     1021 cgcgatcttc gattcggtat ccgttggaac gacgatgaag gaagagctcg ccgcgcacgg
     1081 agtgatcttc tgctcgttcg gcgaggcggt gcagcagcat cccgagctcg tccgcaagta
     1141 tctgggctcg gtcgttccat acagcgacaa cttcttcgcc gcgctcaaca gcgcggtgtt
     1201 cagcgacggc tcgttctgct acgtccccaa gggcgtgaag tgtccgatgg agctgtcgac
     1261 gtatttccgc atcaacgcgg cggacacggg ccagttcgag cgcacgctga tcatcgccga
     1321 tgaagctgcg tcggtgagct atctcgaagg gtgcaccgcg ccaaaacggt cgaccaacca
     1381 gctgcacgcc gccgtcgtcg agcttgtcgc gctggacaac gcgacggtca agtacagcac
     1441 cgtgcagaac tggtacgcgg gcgacgccga aggcaagggc ggcatctaca acttcgtcac
     1501 caagcgcggc aaggccgccg gtgtcaattc aaaaatctcg tggacgcagg tcgagacggg
     1561 atcggcgatc acgtggaagt atccgagcgt gctgctggtc ggtgacaact cggtcggtga
     1621 gttctactcc gtcgccgtgg tgaacaaccg ccagcaggcc gacacgggga ccaagatgat
     1681 ccacatcggc aagaatacaa agtcgacgat cgtctccaag ggaatctccg cgggtcacgg
     1741 caacaacagt tatcgcggtc gagtgcaggt gatgccgcgc gcgacgaatg cgcgcaacta
     1801 cacgcagtgc gattccatgc tgatcggaaa tcgctgcggc gcgcatacct tcccgtacat
     1861 cgaagtcgcc aaccgcaccg caaccgtcga gcacgaagcc agcacgtcca agatcggcga
     1921 ggatcagatc ttctactgca agcagcgcgg aatcagcgca gagcaggcgg tgtcgatgat
     1981 cgtgagcgga ttctgccgcg aagtattcca ggagctgccg atggagttcg cgctcgaagc
     2041 gcagcagctg ctggggataa cattggaagg cagcgtaggc tgatgatcac gcgtcatcat
     2101 tcccgcggca ggggcgacgc cccgatacgt caccgcgacg catgtgctgc cgcgacggca
     2161 ttattcaccg gtgcgcgggc gacgcatgcg ctgccgctaa ttgcatcgcg cgcagacgta
     2221 cgggcgacgc atgcgtcgcc cctacctgca tccccgcgcc ctcacatccg atacatctaa
     2281 atgctcgata taacctccct ccgtgccgga atcgccgaac gcgaaatcct caagggcatc
     2341 gatctcaaca tcaagcccgg tgaagtgcac gcagtcatgg gcccgaacgg ttccggaaaa
     2401 tccacgctcg cgcaggtact cgccggcaat cctgcctacg aagtgctcgg cggctccgcg
     2461 aaatacgacg gcgaggaatt gctggagatg gatcctgaag tgcgcgcaca gaagggaata
     2521 tttctcgcat tccagtatcc ggtcgagatt cccggcgtca ccaacgcgta cttcctgcgc
     2581 tcggcgtaca acgagattcg caaggcgcgc ggtgaggagg aagtggatcc gctcgagttc
     2641 ctgga
//
LOCUS       DATIMD010000522         5192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4836253, whole genome shotgun sequence.
ACCESSION   DATIMD010000522 DATIMD010000000
VERSION     DATIMD010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5192
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4836253"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..1796
                     /locus_tag="VLI40_11665"
     CDS             228..1796
                     /locus_tag="VLI40_11665"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSU97880.1"
                     /translation="MAFPQINQMGEVLSTALMTHECVLTNTTSFARGPSNIQVRFNLI
                     GGPMREKSARIARRVFYSLLALPASLLAQTPSRVREIDGLMTTLYERGQFNGSIIVAV
                     GGKAIYRKGFGYADLRSRRPFTPATISNIGSVAKQFTAMAVMMLAEQHKLKYDDPVSK
                     FIPELSATLSGVTLRHLLNHTSGIPDVGDLGIDHPRLTNDEVLRRLSKPGFLVSRPGE
                     KYRYSNANYVLLAVIVERISGEHFADFLAEHIFRPCGMHSTFVYDGSPLDARLVATGY
                     DQFGNRAGDDALMTGSSGMYSTVDDLLKWDQSLYTDRLVRQSTLADAFAAGHVAEGAS
                     TYGFAWNIDYQDGHKFVWHQGATGGYRALIERRLYEKTTILILTNKGNSKRLEIADAI
                     MNILGGKPYTFPKRSIAATMYGLIRQGELRVAVKTYQLARAGRDTTYDLSEPELNSLG
                     YQLLAGDHKTSDAIEIFKLNTVAYPASSNAFDSLAEAYEVNGNKELAIRNYRKAVALD
                     PTNLHAVDMLKKLK"
     gene            complement(1920..3869)
                     /locus_tag="VLI40_11670"
     CDS             complement(1920..3869)
                     /locus_tag="VLI40_11670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HSU97881.1"
                     /translation="MFRDKFWISLLLTLPTLVWGHMLQGALHYTAPSFPGARWIPAIF
                     GTAVFIYGGRPFLQGAVREVRDRLPGMMTLIALAITVAFGFSAAVVLGFPGMPLWEEL
                     ATLVTVMLLGHWLEMRSISQAQGALGELARLLPSTAPRVRGSGSDEHIEDVPVADLRD
                     GDMVLVRPGASVPVDGVVHAGQSSVNEALITGESAPVEKKEGAQVIAGTVNGAGSLRV
                     TVTGTGDKTALARIMRLVQQAQSSRSRAQVLADRAAFWLTCIALGAGIVTLIVWLAVH
                     ASPATAIERFVTVLVIACPHALGLAIPLVLAISTTLGARSGLLVRDRRGLEDARNLTT
                     VVFDKTGTLTLGEHRVVAISTTGQLSEDTALQLAASVEHDAEHPVARAIVKSAEERGL
                     SVQPADAFQAIPGRGARATVAGRDLSVGGPNLLTGMNATPEPALQRFADDAATRGQGV
                     VFLLENGEALAAFAVADAVRPESAEAVRKLHDAGIEVVMMTGDARTVADAVARTLGID
                     IVLAQVLPEDKAANIERLQKEGKRVAMVGDGVNDAPALATADVGIAIGAGTSVAVEAG
                     DIVLVRSDPRDVSRIITLSRATYSKMVQNLWWAAGYNIVAIPLAAGVLAPIGFVLSPA
                     VGAVLMSLSTIVVAINAQLLRRVVL"
     gene            4094..4927
                     /locus_tag="VLI40_11675"
     CDS             4094..4927
                     /locus_tag="VLI40_11675"
                     /inference="COORDINATES: protein motif:HMM:NF017933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF981 family protein"
                     /protein_id="HSU97882.1"
                     /translation="MKLPNWALRPSIAGSGTLVADGGSSAWTTLSHEEALMLMQATGG
                     LVIDWTRMPTYNTIMAVAAGSGLISLVYFARELKRETDVHLESWALALAVPGFILAIT
                     GIHMTLTWPFAKYFPYDNIIFGETSFAFGVLLLAATFYLWSRGPGVIASGDPAGYLAR
                     VARPLSLFIFGMGLALCAIAMAGLVFRLFAAPPEEPISGAFANYPWIEAIFMSGLFGI
                     IGIGALLFPFALRGFTHGSPDTVAQRVTGWFWVIGGVAFFLFGALNFFTHIGLIVHTM
                     G"
BASE COUNT         1026 a         1481 c         1588 g         1097 t
ORIGIN      
        1 aattacaagg agtacgaggc ggatctgcat cggcgtaagg gcatagatgc ggatcagccg
       61 aagaggatca agtacaaggc gctggtgcgg ggatagtcac gtgagggact gtctgtcgcc
      121 tgtccaatcc catgcgcgcg attcggaagg tcccgccgcg cccgagacgc cgaggactcg
      181 gagtgcgtcg ccggtcgtcc tgatgggttg accgatagga ggggattatg gcatttcccc
      241 aaatcaacca aatgggtgaa gtgctgagta cggcgttaat gacgcatgag tgcgtgctca
      301 caaacacaac cagtttcgcc cgcgggccat ccaatattca ggtacggttc aatctgattg
      361 gaggtccaat gcgggagaag tcagcacgta tcgccaggcg cgtgttctac tcgctgctcg
      421 ctctgccggc gagtcttctc gcgcagacgc cttccagggt ccgcgagatc gacggtctca
      481 tgacaacgtt gtatgaacgc ggtcaattca acggtagcat catcgtggcg gttggcggca
      541 aggcgatcta tcgaaagggc tttggttatg ctgaccttcg atcgcggcgg ccgtttacgc
      601 cagcgacgat ctcaaacatc ggctctgttg cgaagcagtt tacagcgatg gcagttatga
      661 tgctggcgga gcagcacaag ctcaagtatg atgacccggt ttcgaaattc atccctgagc
      721 tcagcgcgac cttgagcggc gtcacgctca ggcatctact gaatcacacg tcaggcatcc
      781 ccgacgttgg agatctcgga atcgaccatc cgcgcctcac aaacgacgaa gtattgcgac
      841 ggctatcgaa accgggcttt cttgtttcca gacctggtga aaaatacagg tacagtaacg
      901 ccaactacgt tttgctcgca gtgattgtag aacgcatttc gggagaacat ttcgcggact
      961 tcctagctga gcacattttc aggccctgcg ggatgcacag cacgttcgtg tacgacggct
     1021 cgcctctcga cgcgcgattg gtcgcgactg gatacgacca attcggcaat cgtgccggcg
     1081 acgacgcgtt gatgaccggc agcagtggca tgtattctac agtcgacgac ttgttgaagt
     1141 gggatcagtc gttgtacacg gatcggttgg tgcgccagtc aacgctcgcc gacgcatttg
     1201 cggcaggcca cgtagcagag ggagcctcga cctatgggtt cgcatggaac attgattatc
     1261 aggacgggca caaatttgtc tggcatcagg gcgctacagg gggttaccga gcactcatcg
     1321 aacgacgcct gtatgagaag acgaccatcc tcatcctgac caacaaagga aacagcaaac
     1381 gcctcgagat tgccgatgca atcatgaata ttctcggcgg gaaaccgtat acgtttccca
     1441 aacgctctat tgcagcgaca atgtacggat tgatcaggca aggggaactc cgggttgcgg
     1501 tcaagacgta tcaacttgcg cgcgccggaa gagacacgac ctacgatctc agtgagccgg
     1561 aattgaactc cctgggatat cagctgctcg ccggcgacca caagacgagc gacgcaattg
     1621 agatcttcaa gttgaacacg gtcgcgtatc ctgcgtcgtc gaatgccttt gacagtctgg
     1681 cagaggccta tgaggtgaac gggaacaaag agctggcaat ccggaactac cggaaagcgg
     1741 tcgcgcttga cccgacaaat cttcatgcag tcgacatgct gaagaaattg aagtaacgcc
     1801 actgaacgtt cggttgatct cctccgtcat ccaggttcgg tcgcgatgcg atgcgagaat
     1861 aagcagcgag acaacgggac aagcatcaac ctgccggatc cgtccctagc gtcgacctct
     1921 cacaacacca ccctgcggag caactgcgca ttgatcgcga cgactatcgt gctgagcgac
     1981 atgagcaccg cgcctaccgc cggcgatagt acaaacccga tgggtgccag cacaccggcg
     2041 gcgagtggga tggcgacgat gttgtagcca gcggcccacc agaggttctg caccatcttg
     2101 ctgtacgttg cgcgcgagag cgtgatgatg cgcgatacgt cgcgtgggtc actgcggacg
     2161 agaacgatgt caccggcctc cacggcgacg ctggtgccgg cgccgattgc aataccaacg
     2221 tctgctgtcg ccagtgctgg tgcgtcgttc acgccgtccc caaccatcgc aacgcgcttg
     2281 ccttctttct gaagtcgctc gatgttggcc gccttgtcct ccggaagtac ctgcgccagc
     2341 acgatatcga tgcccaatgt gcgcgcaacg gcatccgcaa cggtgcgcgc atcacctgtc
     2401 atcatgacga cttcgattcc tgcatcgtga agcttgcgca ctgcttcggc ggattcggga
     2461 cgcacggcgt ccgcaactgc gaatgcggcg agtgcttcgc cgttctcgag tagaaagacg
     2521 accccctgtc cgcgtgttgc tgcatcgtcg gcaaagcgct gaagcgctgg ttctggtgtc
     2581 gcattcatgc cggtcaacaa attcggaccg ccgaccgaga gatctcgtcc tgctacggtc
     2641 gcgcgcgcgc cgcgccctgg aattgcctgg aatgcgtccg cgggctgaac ggacagtccg
     2701 cgctcctccg cgctcttcac gatcgcgcgt gctacgggat gctcggcgtc gtgttccacc
     2761 gacgctgcga gttgcagcgc cgtgtcttcc gataattggc cggtcgtact tattgctacg
     2821 acgcgatgct ctccgagagt gagtgtgcct gtcttgtcga agacgactgt cgtaaggttg
     2881 cgcgcgtcct cgagtccgcg tctatcgcgc acgagcaggc cggagcgtgc gccgagtgtc
     2941 gtcgagatcg ccagcacgag tggtatggcc agcccaagtg cgtgcggaca tgcgattaca
     3001 agcaccgtta cgaagcgttc gatcgctgtc gccggcgagg catgaacagc gagccaaacg
     3061 atcagtgtta cgattcctgc gccgagtgcg atgcaggtga gccagaacgc ggctcggtcg
     3121 gcaaggacct gtgcgcgcga tcgcgagctc tgcgcctgtt gtaccaggcg cattatcctc
     3181 gcgagagcgg ttttgtctcc cgtgccagtg acggttacgc gaagtgagcc agcgccgttc
     3241 accgttcccg cgatgacttg cgcaccttcc tttttttcaa cgggcgccga ctcaccggtg
     3301 atgagcgcct cattcaccga gctctggcct gcgtgcacga cgccgtctac cggcacgctc
     3361 gcgccgggac ggacgagcac catgtcaccg tcacgtaagt cagctactgg tacgtcttcg
     3421 atgtgctcat cgctgccgct cccacgcacg cggggggcgg tgcttggcaa aagcctggcg
     3481 agctctccga gtgcaccctg agcttgtgag atcgagcgca tctcgagcca gtgacccagg
     3541 agcatcacgg tgacgagcgt tgcgagctct tcccagagcg gcatgcctgg aaaacccagc
     3601 acgaccgccg cgctgaatcc aaacgcaact gtgatggcca gcgcgatcag cgtcatcatg
     3661 cctggcagtc ggtcacgaac ctcgcgaacc gcgccttgca ggaacggacg gccgccgtaa
     3721 atgaacacgg cggtgccgaa gatcgcgggg atccaacgcg cgcccggaaa gctgggcgcg
     3781 gtgtagtgga gtgctccctg gagcatgtgc ccccacacga gcgtcggaag cgtgaggagg
     3841 agcgatatcc agaacttgtc gcgaaacatc gctacgctgt gtccagcgtg tttgtcgtgt
     3901 ccaccgtgac tgtggcctcc cgcgtcatgc cgggagtggt ctgcttgcgt gtggtgatcc
     3961 gttacggatc cgacggaggc atggccggcg gcctgggtag gattcgaatg gctgtggtcc
     4021 gaatgtgggt cgctcatgcg tgcctcgctg ggttctgagg cgtagtttgt gggtgcggtc
     4081 gcaggttcac aaggtgaagc tgccgaattg ggcactacgc ccgtcgatag ctgggtcggg
     4141 aacgctagtt gccgatggag gatcgagtgc gtggacaaca cttagccatg aggaggcatt
     4201 gatgctgatg caggcgacgg gtggactcgt gatcgactgg acgcggatgc caacctacaa
     4261 cactatcatg gctgttgcgg ctgggagtgg actgatatcg ctcgtgtact tcgcccgaga
     4321 gctcaaacgt gagactgatg tgcatctgga atcgtgggcg ctcgcgctcg cggtaccggg
     4381 attcattctc gcgattacgg gcatccacat gacattgacg tggccgtttg cgaaatactt
     4441 tccgtacgac aacatcatct ttggcgagac gagttttgcc tttggcgtgc tgctgctcgc
     4501 tgcgacgttt tatctatgga gtcgtgggcc gggcgtgatt gcgagcgggg atccggctgg
     4561 gtatctggcg cgggtcgcga gaccactttc gctcttcata ttcggaatgg gcctggcgct
     4621 gtgcgcgatc gccatggcag gtctcgtatt caggctgttc gcggcgcctc cggaagagcc
     4681 gatttccgga gcgtttgcca actatccgtg gatcgaggcg attttcatgt cggggctgtt
     4741 cggcatcatc ggaatcgggg ccttgctgtt tccttttgcg cttcgtggct tcacgcatgg
     4801 ttcccctgat acagtcgcac agcgtgtcac cggatggttc tgggtgattg gcggcgtggc
     4861 attttttctg ttcggcgctc tcaatttctt cacacacatc gggctgattg ttcacacgat
     4921 ggggtgaaga gtggtactac gagatcgttc catcgactac cagctaattg tcataccgac
     4981 tgcgagcgtt aaaacgggag attgatcgca ggcgtggagc tgctcgtcac cttgcttgca
     5041 cgcttgccgg agttcctgga gctctcggca acggaaacta tcgacgcttg gtggcgcgcc
     5101 gaactttcaa tcgacccttg tccgagcgcg gtcctgcatc catagttggc cgcacatgca
     5161 aaagacgtat cgctgcattg tcccgctttt cc
//
LOCUS       DATIMD010000523        13891 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2521169, whole genome shotgun sequence.
ACCESSION   DATIMD010000523 DATIMD010000000
VERSION     DATIMD010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 13891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13891
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2521169"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..399
                     /locus_tag="VLI40_11680"
     CDS             <1..399
                     /locus_tag="VLI40_11680"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSU97883.1"
                     /translation="DIDNFMKQPWVSTCSDGSGGHPRKYGTFPRKLREYVYKRHVLTL
                     PQAVHVSSELTANTLGLKDRGTLAAGNYADVIVFDPKTVEDRATYEQPTLLAVGMRYV
                     FVNGVPAVDGGTYTGALPGRALKRVGTPVQ"
     gene            complement(662..1399)
                     /locus_tag="VLI40_11685"
     CDS             complement(662..1399)
                     /locus_tag="VLI40_11685"
                     /inference="COORDINATES: protein motif:HMM:NF013757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HSU97884.1"
                     /translation="MSVLELFSPTLREVGVVDAANQLGLSKGTLSRWLSAMESAGFLD
                     RDPVSLRYRLSARLAVIGELARDATSLQRLAIAELQWLATTTGETSNLAVLVGSEAMN
                     LSAVESPRPIMHTGWVGRRLPVHATAAGKSLLAWHATAELRRLLPVQLPKLAAQTITH
                     LDEFLEELAKVREQGYSVAWAEMEDDLAAVGAPVRNHTGLVVGALTIGAPISRVPADR
                     LKLCSEAVLKAANSLSEQLGYRSEFSM"
     gene            1741..4857
                     /locus_tag="VLI40_11690"
     CDS             1741..4857
                     /locus_tag="VLI40_11690"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSU97885.1"
                     /translation="MITDQLRALCRGAIGAFVLLVSFAGVAAAQSGTITGHVTVKGTT
                     QPVPDAHVTVTGTNLGASSSATGAYRISGLKPGTYKVRALRIGYAEQQQSVTITDSQS
                     QTIDFALEAVATKLEGVVTTVTGQQRKIEVGNAIAQIDAAKDVQTKAVANVADLLTSR
                     AAGVQVTPGLNTGGGSRIRIRGTSSLSLSNNPIYVIDGVRVEGTTGSSTLSVGGTTPD
                     RIDDINPEEIASIEVVRGPSAATLYGTDAANGVIVITTKHGTTGKPQLTYFTEQGVHV
                     DNNKYPDAYTGWTTGKTAATTSSVANRVNCFLTAQAAGTCTQDSVTSYNLYDDPESTP
                     NGAGYRQAHGLQLSGGSPAVRYFMSGQWESEDGVLKVPEFDQRYLTAHGLTLRPEAAD
                     PNHLGKISTRANFNMTLSPQFDLAFNTGYISQNMRLPTSDDSGTEGVAGNTYAGPGFK
                     YNINPTTGDTLYGWRQITPRSIYQVYTNQAIQRVITGGNSNWRPTDWFTGRADVGLDY
                     INRTDTQLCRFAECPDLGGDSRLGFKIDNRTNFFTYTANVSGSATHKLNDRVGTTTTV
                     GVQFVRSLFDRNGASGVHLSPGATTISGAGTLTADESTTETRTLGAFLEERLAFGDNL
                     FLTGAVRSDRNSAFGANFKTVLYPKVSASWVISNQSFFPKYSWLNQLRLRSAYGASGV
                     EPGTTDAVQYYTATNALTESGTAPALVFTALGNQNLKPERSSEFEVGGDGTFFGGRIS
                     TEITYYSKQSKDALVSRVLPPSLGTGATARLENLGHVSNTGWEALITLIPIQRVGYGW
                     DITFNGSSNTNELVSLGGVPPIVLSSTLQDREGYSLNGWWSKPILSYSDKNHDGVIEY
                     NKDPTLSEVTVGDTTAFLGNSMPKYQLAVTNGIEFFHRLFRVEAMFDYKGDYKIYNNT
                     ERIRCASRNNCSGLINPASSLFEQSRSVAVRETPQRTVAGFIEPGDFIRFRELNLTFT
                     APDRFANRILHSRSLAVTLAARNLGIVWTKYSGVDPEAFATTGDAPSEFQAFGPPTYY
                     MLRFSIGF"
     gene            4883..6271
                     /locus_tag="VLI40_11695"
     CDS             4883..6271
                     /locus_tag="VLI40_11695"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSU97886.1"
                     /translation="MTIRSRSFLLRWAAPLAVVGTLALAACNVSDVLKVTDPDVINPS
                     DVQSAAGASAVRFGAIARLNSATSGGSSGSEGLFLLSGLLADEWNNGDSFIDRQSVDE
                     RVINPSNSFLTDVDRMLHRARLSATQATQLLEKYSPNGPPSDIAEMYFVRAYVENVIG
                     ENYCNGLILSSVVNGVEVYGSPMSTTDAFNLALAHADSGLALITGTSTADLKVKNALM
                     VTRGRILLNLNRPTDAGAAVATVPTSFKYQNLHSQATSDNQIWSYNNIARRYSVSTGE
                     GTNGLNFASANDPRVPICTGGDTKCKAIGATFSTRDDGSTPLFVQMIWPTRDASVTIV
                     GGVEARMIEAEAAFRAGNPAGAIAKLNQARTEGGVAGLAATLTDPGTDAARVNLIFRE
                     RAFWLFSTGHRVGDMRRLIKFYNRPAESVFPTGAWIKGGNYGTDVNFPVPQAEQNNPN
                     LPSAQTCTDRNA"
     gene            6391..8448
                     /locus_tag="VLI40_11700"
     CDS             6391..8448
                     /locus_tag="VLI40_11700"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HSU97887.1"
                     /translation="MRRTEHGVPHIRADNMEAAGYGLGYVQIEDYGARVAMGLLHSRG
                     EMGRWFGPDSVDGDFNARLNYETAVAGYPTLDTDTRAIYDGFAEGVNRYIELHPEEFP
                     TGFAPHFTGYDVLAHEVSGASAREAARFLRKIDPKTRQRGRDAEPEVAVASPIAGGQD
                     PPDEGSNAWAFAPSRSKSGHAILLRNPHLNWNSGYYEAQLTVPGVMDFYGDFRIGSPF
                     GVVGGFNRDLGWSTTNNSPLLSQIYALQVDSTQVDHYLLDGASIPLQRQLTTVEFRNG
                     NGLSSETRETFRTTLGPVIYRGNGKIYVLKAAGDGDVRGGEQFLRMMRSHSLAEWKDA
                     MRMRARITSNFTYADRAGNILYVWNASIPKLPLPSGGDTAAVPISRTSEAWTSFVPFD
                     SLPQLLNPKGGYVENSNDPPYFTNLQQPLDRSKYPAYFPEPRLGLRQQLALSLINNDH
                     KLNLQDVLALKHSYRMLLADRVRDDLVKEVRASNPSPDVARAIDMIARWDKTVAPASR
                     GGVLFEMWWRKYIDHTRPDTMYAVQWTAKQPASTPSGIRFPDRSVEAFKWAVEETTRR
                     FGSPDVAWGDVHRVRIGKVDVPVGGCNGDIGCFRVLWYKDDPDGKREANGGDGWILAV
                     EFDNEPQAYSVLAYGESSREDSPFHSDQAEMFARGELKRVYWQEKDVETHTIQRYRPG
                     EKR"
     gene            8545..9198
                     /locus_tag="VLI40_11705"
     CDS             8545..9198
                     /locus_tag="VLI40_11705"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HSU97888.1"
                     /translation="MTEHVRYVEQSPMRVGPVTLEGNRVRLIPMTLDHVEALFRAANF
                     PEIWEHTTTQPMETVADITAYVETALAGQAAGHTIPFVTTDRATGEVLGSTRFADISP
                     NDRHLAIGWTWLRPDRQHTGINGEAKALMLQQAFDVWGALRVEIRTDVRNVRSRAAIE
                     RIGGTYEGTLRQHMIVDGRVRNTAYYSVIDTDWRDPGHRAYRNAVSYDIIPRAEPLI"
     gene            9236..10057
                     /locus_tag="VLI40_11710"
     CDS             9236..10057
                     /locus_tag="VLI40_11710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97889.1"
                     /translation="MSSEPTYSAGSSESSGSVIIRRVSTLPEYDECVVIERETWGSQF
                     AEVVPTTILRIAQEVGGVTAAAFAPDGTMLGFVFGITGVRDGELAHWSDMLAVRVGAR
                     DMGLGKKLKAYQRDLLLEIGVRRMYWTYDPLVARNAYLNLMQLGARVVEYRTNFYGED
                     TGSVMHGALGTDRFIVVWQLDREGPRDDHPDMGDWTNTPLIDEVLPDSLPDDARVRVA
                     IPNDIFAVLDADPKRAVQWRETTRTALTTYLNRGYSVLGFLRGNDTERGTYLLAR"
     gene            10080..11204
                     /gene="menC"
                     /locus_tag="VLI40_11715"
     CDS             10080..11204
                     /gene="menC"
                     /locus_tag="VLI40_11715"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HSU97890.1"
                     /translation="MIRIQEITLHEIQLPLKEPFRISSGLCTERRIMLLKVRDADGVA
                     VWSECVAGERPNYASETIDAAWLVISEYVAPRVFGTEFEQAAHIHAALDVNFRGHNMA
                     KAAIEMAAWALVAERDGMPLARLLGGTRTEIPTGISIGIQATPEALVGRVGRALADGY
                     RKIKLKIEPGHDLDFIRAVRNAYPDAPLMADANNAYTLKDAAHLKQLDPLHLVMIEQP
                     LAYDDIVRHAELQHMLTTPICLDESITSVDRAEDMITLKSGRIINIKPGRVGGFQQAR
                     AIHDLCAKHGIPVWCGGMLESGIGRSYNVALASLPNFTIPGDLSPSARYWERDVIKPE
                     WTMSADGMMKVPLDQPGIGVAVDEDRIHDLTVRSTTLSAK"
     gene            11222..12436
                     /locus_tag="VLI40_11720"
     CDS             11222..12436
                     /locus_tag="VLI40_11720"
                     /inference="COORDINATES: protein motif:HMM:TIGR01891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HSU97891.1"
                     /translation="MPTKTAIDNSAPHVPDSVRALFPDDLALQLSALRRDLHHNPELS
                     WQEKRTSDLLAATLEGFGVTDIKRVANTGLVARVPGRDRSAPVVALRGDIDALPIHED
                     TGLPFSSANDGVMHACGHDVHASWAVAATRLLLESPAKGDVLVVFQPAEEVGEGARAI
                     LATGALDSVRAIFGGHVDRRFEVGQIVAQEGALAASTDTFRITLTGAGSHGARPHESR
                     DPIVGAGALIGALQTIVSRQLDPAKPGVVTVGTIKGGSAPNIIPDSVELSGTIRATTA
                     ETRTLLTGEVQRIAQAIAATYGLTATVVLKGGTPPIVNPAIGANWAREAVTHVLGADA
                     LVPLGTTNMGGEDFAEYIQKIPGCFMRIGAREKGGRVIAAHSPGYYASEDALFIGAAV
                     LAECARVASAAL"
     gene            complement(12521..13369)
                     /locus_tag="VLI40_11725"
     CDS             complement(12521..13369)
                     /locus_tag="VLI40_11725"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF010587.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HSU97892.1"
                     /translation="MKRVAPIVTGTTPPPLALDCELTTEWLVAFLRAEFKRRGFEKAV
                     VGMSGGVDSAVTGFLCARALGAPNTIAVRMPYRTSNPQSLEHAKLVIDALGVVDRTID
                     ISAAVDGYLANESDADASRRGNVMARMRMIALFDLSAKYHALPVGTGNKTERLFGYFT
                     WHADDSPPINPLGDLFKTQVWELARFLGVPEAIINKPASADLIQGQTDEGDFGISYAK
                     ADAILNWLLTGYTAEEIVAHGFAAGDVEIVRKRLGSTHWKRKLPTVAMLSPTAIGESY
                     LRPVDY"
     gene            complement(13376..>13891)
                     /locus_tag="VLI40_11730"
     CDS             complement(13376..>13891)
                     /locus_tag="VLI40_11730"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HSU97893.1"
                     /translation="LFDEERFVEHGIGIRAFDTRWGRAAILICEDAWHALTATAAALD
                     GAQVIFVPSASPARGAWPQPDEEIRGPASMHRWERLARDRAEEHGVFVALIQLTGNEG
                     GKAFPGGSVIAGPHGDIRARAPLWEEASMAVTLDLGDITRARASSPLLADLRTMLPHM
                     LRSLGRAGERE"
BASE COUNT         2835 a         4341 c         4171 g         2544 t
ORIGIN      
        1 gatatcgaca acttcatgaa gcagccgtgg gtgagcacct gctccgacgg atcgggcggt
       61 catccgcgaa agtacgggac ctttccgaga aagctgcggg agtacgtgta caagcggcat
      121 gttctcacgc ttccgcaggc agtacacgtg agcagcgagc ttacagcgaa cacgcttgga
      181 ctcaaggacc gcggaacgct ggcagccgga aactacgccg acgtgatcgt cttcgatcca
      241 aagaccgtcg aggacagggc gacgtacgag cagccgacgc ttctggccgt gggcatgcgc
      301 tacgtattcg tgaacggtgt tcctgcggtg gacggcggaa cgtacaccgg cgcgctaccg
      361 ggtcgcgcac tcaagcgcgt cggtacaccg gtgcagtaag cggagttttt tgcgccgtcg
      421 tgattcccgt tgtagggcgc ggatgagtcc gcgcctcggg aatccatgtt atggcagggg
      481 tcgtcatccc cgagaaagcg ccacagatct gtcattcccg cgaaagcggg aatccatctg
      541 ctgccgaccc gcttcctgct ctcatcgcat tcaaagatcg ataacatgga ttcccgcttt
      601 cgcgggaatg acgactccct gagccagcat tcgcgggaat gacgggtctg tagatccact
      661 atcacattga gaattcgctg cggtaaccca gctgctcgga caacgagtta gccgccttca
      721 gcaccgcctc gctgcacagc ttgagtctgt ccgccggaac tctcgagatc ggcgcaccga
      781 tggtgagtgc gccgaccacg agcccggtat gattccggac cggagcgccc acagccgcga
      841 ggtcgtcctc catctcggcc caggcgaccg aatagccctg ctcgcgcact ttcgccaact
      901 cctcgagaaa ttcgtcgaga tgcgtgatgg tctgcgcggc aagctttggg agctgtaccg
      961 gcagcaggcg tctcaactcc gcagtcgcgt gccaggccaa caacgatttg ccggcggccg
     1021 tcgcgtggac cggaagccgg cggccaaccc agcccgtgtg catgatcggc cgcgggctct
     1081 cgaccgccga caggttcatc gcttcggacc ctaccagcac ggcgagattc gaggtctcgc
     1141 ccgtagtcgt cgccagccac tgaagctcgg cgatcgccag ccgctggagg ctcgtggcgt
     1201 cgcgtgccag ctcgccgatg actgcaagcc gcgccgacag tcggtagcgc agtgaaacgg
     1261 gatcgcggtc cagaaacccc gctgactcca ttgcgctcag ccagcgcgac aatgtcccct
     1321 tggaaagacc gagttggttg gccgcgtcca cgacgccaac ctcgcgtaga gtcggcgaga
     1381 acagctccag tacactcatg ctctttttca gcacagctct ttccttggcc ggtgaatgca
     1441 accctgttgc aaactctaga actctaaccg cttcaggcca tatacgcaca gagtcggcgt
     1501 atgtgacgac cgcatttcca ccccaccggc cgctcgacca aatccgtcct tgcgcgatcc
     1561 gatatggagt acgatgttaa tccctcgtca agaaaagggt gggacggagt tgcataatct
     1621 gcaactagtt ctcgatatat tcttgacgcc aggcgatgca cgaaacgacc ctctaccgcg
     1681 gagaattggt gttagttgcc agcccttgtc tgcccgcttc ctctcaacag gacatctgac
     1741 atgattactg atcagcttcg cgctctctgt cgtggcgcga ttggcgcgtt cgtgctgctt
     1801 gtgtcgttcg ctggtgtggc tgccgcccaa tcggggacca ttacgggaca cgtaacggtg
     1861 aagggcacaa cccagccggt ccccgacgct cacgtgactg tcacgggcac caacctcggc
     1921 gcctcgtcca gtgcgaccgg cgcatacaga atctccggtc tcaagccggg aacctacaag
     1981 gtgcgcgcgc tgcgcatcgg gtacgcagag caacagcagt cagtcaccat caccgacagt
     2041 cagtcacaga ccatcgactt cgcgctcgaa gcagtcgcga ccaagctcga aggggtcgtg
     2101 acgacggtca caggtcagca gcgcaagatc gaggtcggta acgcgatcgc gcagatcgac
     2161 gccgccaagg acgtccagac caaggccgtg gcgaacgtgg ccgacctgct cacttcgcga
     2221 gctgccggcg ttcaggtgac gcccggtctc aacactggcg gcggctcgcg catccgcatc
     2281 cgcggaacga gctcgctgtc actctccaac aatccgatct acgtcatcga cggagttcgc
     2341 gtcgaaggaa cgaccggatc atcgacgttg agcgtcggcg gaacgacacc ggaccgaatc
     2401 gacgacatca atcctgaaga aattgcatcg atcgaagtgg ttcgcggacc gtcagcggca
     2461 acactgtacg gcaccgacgc ggcgaacggc gtgatcgtca tcacgaccaa gcacggaacc
     2521 acgggcaagc cgcagctcac ctacttcacc gagcagggcg tacacgtcga caacaacaag
     2581 tatccggacg cgtataccgg ctggacgacc ggcaagaccg cggcgacgac gtcgagcgtg
     2641 gccaacagag tgaattgttt tcttaccgct caggcagccg gaacctgcac gcaggacagc
     2701 gtcacgagct acaatctcta cgacgatcct gaatcgaccc cgaacggcgc aggttatcgc
     2761 caggcgcacg gtctccagtt gagcggcgga tcaccagcgg ttcgctactt catgagcggc
     2821 cagtgggaga gtgaagacgg cgttctcaag gtgcctgagt ttgaccagcg ctacctcaca
     2881 gcacacggcc tcacgcttcg ccccgaagcg gccgacccga accacctggg caagatctcg
     2941 acccgagcga acttcaacat gacgctcagt ccgcaattcg accttgcctt caatacggga
     3001 tacatatcgc agaacatgcg actcccgacg agcgatgact cgggcaccga aggcgtggca
     3061 ggcaatacct acgctggacc gggcttcaag tacaacatca atccaacgac tggcgacacg
     3121 ctgtacggct ggcgccagat cacgccgcgc agcatctacc aggtctacac gaatcaggcg
     3181 atccagcgcg tcatcaccgg aggcaactcc aactggcgcc cgactgactg gttcacgggc
     3241 cgcgcagacg ttggtctcga ctacatcaac cgcacggaca cgcagctctg ccgcttcgca
     3301 gagtgcccgg atctcggtgg tgacagccgg ctcggcttca agatcgacaa tcggaccaac
     3361 ttcttcacct acaccgccaa cgtcagcggc agcgcgacgc acaagctcaa tgacagggtc
     3421 ggaaccacga cgacggtcgg cgtccagttc gtccgcagtc tgttcgaccg caacggtgcc
     3481 tcgggcgttc acctttcccc gggtgctacc acgatcagcg gcgctggcac actcaccgcc
     3541 gatgaatcga ccacggaaac tcgcacgctc ggcgcgttcc tcgaagagcg tctcgcattt
     3601 ggcgacaatc tgttcctgac cggcgcagtg cgctcggatc gcaacagcgc attcggtgcg
     3661 aacttcaaga ccgttctgta tccgaaggtg tccgcatcct gggtcatctc gaatcagtcg
     3721 ttcttcccga agtacagctg gctcaatcag ctgcgtctgc gcagcgcgta cggtgcatcg
     3781 ggtgtcgagc ccggaacgac cgacgcggtg cagtactaca cggcaacgaa cgcactcacg
     3841 gaatccggca ctgcgccggc gctggtcttc actgcgctcg gcaaccagaa tctcaagccg
     3901 gaacggtctt ccgagttcga ggttggcggc gacggtacgt tcttcggcgg cagaatatcc
     3961 acggagatca cgtactacag caagcagtcc aaggacgcac tcgtcagccg tgtgctaccg
     4021 ccgtcgctcg gcacgggagc cactgcacgt ctcgagaacc tcgggcatgt gagcaacacg
     4081 ggttgggaag cgttgatcac cctcataccg atccagcgtg tgggatacgg ttgggacatc
     4141 accttcaacg gatcctcgaa taccaacgag ctggtgagcc tgggtggtgt tccgccaatc
     4201 gtgctgagct cgacacttca ggaccgcgag ggatattcgc tgaatggatg gtggagcaag
     4261 cccatcctca gctacagcga caagaatcac gatggcgtca tcgagtacaa caaggatccc
     4321 acattgagcg aggtcaccgt gggcgatacc acggcgtttc tcggtaactc gatgccgaag
     4381 taccagttgg ccgtgacgaa cggaatcgaa ttcttccatc gtctgttccg agtggaagcg
     4441 atgttcgact acaagggtga ctacaagatc tacaacaaca ccgagcgcat tcgttgcgcg
     4501 agccgcaaca actgctccgg tctgatcaat cctgcgtcgt cgctgttcga gcagtcacgt
     4561 tcggttgcag tacgcgagac gccgcaacgc acggtcgccg gattcatcga gccgggcgac
     4621 ttcatccgct tccgcgagct gaacctgacg ttcaccgcgc cggaccggtt cgcgaacagg
     4681 attctgcaca gccggagcct ggccgtcacg ctcgctgctc gtaacctcgg tatcgtctgg
     4741 accaagtaca gtggtgtcga cccggaagca tttgcgacaa cgggcgacgc tccttcggaa
     4801 ttccaggcgt tcgggccgcc gacgtactac atgctccgct tctccatcgg cttctaggat
     4861 gacacctcca atgacttccc aaatgacaat acgttcgcgc agcttcctgc tgcgctgggc
     4921 agcgccgctc gcggttgttg gtacgctcgc gcttgccgct tgcaacgtct ctgacgtgct
     4981 caaggtcaca gatccagacg tcatcaatcc gagcgatgtg cagtcggccg ctggcgcttc
     5041 agcggttcga ttcggagcga tcgcgcgact caattcagca accagcggtg gcagcagcgg
     5101 ctcggagggg ctcttccttc tgagcggcct gctcgccgat gagtggaaca acggtgattc
     5161 cttcatcgac cgccagtcgg tcgatgagcg cgtgatcaac ccgtcgaaca gcttcctcac
     5221 agacgtggac aggatgctgc accgtgcgcg actgtcggcg actcaggcca cgcagctgct
     5281 cgagaagtac agtcccaatg ggccgccgtc ggacattgcc gagatgtatt tcgtccgggc
     5341 gtacgtggag aacgtgatcg gagagaatta ctgcaatggt ctcatactga gctccgtcgt
     5401 caacggtgtg gaagtgtacg gctcaccgat gtcgacgacc gacgcattca acctcgcact
     5461 cgcgcacgcc gatagcggac tcgctctcat caccggcaca tccaccgccg atctgaaagt
     5521 gaagaacgcg ctcatggtga cgcgtggacg aatcctgctc aatctcaacc ggccgacaga
     5581 tgccggcgcg gcggtagcca ccgtgccaac cagcttcaag taccagaatc ttcactcgca
     5641 ggccacgagc gataatcaga tctggagcta caacaacatc gcgcgccgtt acagcgtcag
     5701 cacgggcgaa ggcacgaacg gtttgaactt cgcgagtgct aacgacccgc gcgtccccat
     5761 ctgcacgggc ggcgatacaa agtgcaaggc gatcggcgcc acgttcagta cgcgtgacga
     5821 cggatccact ccactattcg tacagatgat ctggccgacg cgtgatgcgt ccgtgacgat
     5881 cgtgggtggt gtggaagcgc gcatgatcga ggccgaggcg gcattccgcg ccggcaatcc
     5941 ggcaggcgcg attgcgaagc tcaatcaggc ccgcactgaa ggcggagtcg cgggactcgc
     6001 ggcaacgctc accgatccgg gcacggacgc ggcacgcgtc aacctcatct tccgcgagcg
     6061 cgcattctgg ctgttctcca ccggacatcg cgttggcgac atgcgccgcc tcatcaagtt
     6121 ctataacagg cccgccgagt cggtatttcc gacgggtgcc tggatcaagg gcggtaacta
     6181 cggtacggac gtgaacttcc ctgttccgca ggcggagcag aacaatccaa acctcccgtc
     6241 cgcccagaca tgcactgacc gcaacgcgta atgcattcgg cattttcgca gagttccatg
     6301 cggtcgttcc ttttagtttc gctcgtcgcc tgtgcccccg ctattgcggg ggcacaggct
     6361 gctccgccag ccatagcaag ccacgtagag gtgcggcgca ctgaacacgg cgtgccgcac
     6421 attcgtgcag acaacatgga agcagccggc tacggtctgg ggtacgttca gatagaagac
     6481 tacggtgcgc gcgtggcgat gggcttgctg cactcgcgcg gcgagatggg tcgctggttc
     6541 ggacccgata gtgtcgacgg ggacttcaat gcgcgtctga actatgagac ggcggtcgcc
     6601 ggatatccca cgctcgatac cgatacccgc gcgatttatg acgggttcgc cgagggcgtg
     6661 aatcgctaca tcgagctgca tcccgaggag ttcccaacgg ggttcgctcc gcatttcacc
     6721 ggctacgatg tactcgcaca cgaggtctcg ggcgcgtccg cgcgcgaggc tgcacgattc
     6781 ctcagaaaga tcgacccgaa aacgcggcag cgcggcagag atgcggagcc ggaagttgca
     6841 gtcgcctcgc ccatcgccgg cggccaggac ccaccggacg agggctccaa cgcatgggca
     6901 ttcgcgccga gtcgaagcaa gtccggacac gcgattctgc tgcgtaaccc gcacctcaac
     6961 tggaactccg ggtactacga ggcgcagctc accgtgccgg gagtgatgga cttctacggt
     7021 gacttccgta tcggtagtcc gtttggagtt gtcggaggtt tcaatcgtga tctcggttgg
     7081 tcgacgacca acaattctcc gctgctgtcg cagatatatg cgctccaggt cgactcgacc
     7141 caggtggatc actaccttct cgatggtgcg tcgatccccc tgcaacgcca gttgacgacc
     7201 gttgagtttc gcaatggcaa tggtctgtcg agcgagacac gggaaacgtt ccgcaccaca
     7261 ctcgggccgg tcatctaccg cggcaacggc aagatctacg tacttaaggc ggctggcgac
     7321 ggcgatgttc gcggtggcga gcagtttctg cgcatgatgc gctcgcactc gctcgcagaa
     7381 tggaaggacg cgatgcgcat gagagcgcgc atcacttcca acttcacgta tgccgatcgc
     7441 gccggcaaca ttctttacgt gtggaacgca tcgataccga agctgccact gccgagtggc
     7501 ggtgacaccg ccgcggtacc gatcagtcgt acgtcggaag cctggacgag cttcgtgccg
     7561 ttcgattcgc tcccgcagct gctcaatccg aagggcggct acgtggaaaa ttcaaatgat
     7621 ccgccgtact tcaccaatct gcagcagccg ctggatcgtt cgaagtatcc tgcgtacttc
     7681 cccgagccgc ggctcggtct tcgccagcag cttgcgctca gtctgatcaa caacgatcac
     7741 aagttgaatc tgcaggatgt gctggcactc aagcattcat acagaatgct gctcgcggat
     7801 cgcgttcgcg acgatctggt gaaggaagtg cgcgcgtcca atccatcacc ggatgttgca
     7861 agggcgatcg acatgattgc cagatgggac aagactgtcg cacccgccag tcgcggagga
     7921 gtcctgttcg agatgtggtg gcgcaagtac atcgatcaca ctcggcccga cacgatgtat
     7981 gccgtgcagt ggaccgcgaa gcagcccgcg tcgacgccga gtgggattcg ctttccggac
     8041 cgctcggtcg aagcgttcaa gtgggccgtc gaggagacaa cacgacgctt cgggtcaccg
     8101 gacgttgcgt ggggcgacgt gcatcgcgtg cgaatcggta aggtggatgt tccggtcggc
     8161 ggctgcaatg gtgacatcgg atgcttccgt gttctgtggt acaaggacga tcccgatggc
     8221 aagcgcgaag caaacggcgg tgacggctgg attctcgcgg tagagttcga caacgagccc
     8281 caagcttact ccgtactcgc ttatggagag agctcacggg aggattcgcc gttccacagt
     8341 gatcaggcgg agatgtttgc tcgtggcgag ctcaagcgcg tttactggca ggagaaggat
     8401 gtggaaacgc acaccatcca acgctaccgt cccggcgaaa aacggtagca tggccggccc
     8461 ggttgagttc gacgccgggc cgacggcgcg attcagcatg tcgcgtggga agatcatttc
     8521 aagacactgg agatacggca gtagatgaca gagcacgtgc ggtacgtcga gcagtccccc
     8581 atgcgcgtcg ggccggtaac gctggaagga aaccgcgtcc ggctgatacc aatgacgctg
     8641 gatcacgttg aagcattgtt cagggctgcg aactttccag agatatggga acacaccacg
     8701 acgcaaccga tggaaacggt cgccgacatc acggcatacg tagaaacggc actcgccggc
     8761 caggcagccg gtcacacgat cccattcgtc acaaccgatc gggccacagg tgaggtgctt
     8821 ggctcgacgc gctttgctga catcagcccc aatgaccggc atctcgcgat tggatggacc
     8881 tggttgcgcc ccgaccgcca gcacacgggc atcaacggcg aggcaaaggc actgatgctg
     8941 cagcaggcgt tcgacgtctg gggcgctctg cgggttgaaa tcagaacgga tgtgcgcaac
     9001 gtcaggtccc gggcggcgat cgagcggata gggggaacgt acgagggaac cctcagacag
     9061 cacatgatcg tcgacggccg tgtgcgcaac accgcctatt acagcgtcat agacacggat
     9121 tggcgggacc ccggccaccg tgcctacagg aacgcagtct cctatgatat catccccagg
     9181 gccgagcctc tgatctgagc gccgctggcc tggccagcta gatttgaagg ggaagatgtc
     9241 ctcagaaccg acttacagcg cgggctcgtc cgaaagctcc gggtccgtca tcatccgacg
     9301 tgtctcgacg ctccccgaat acgacgagtg cgtcgtcatc gaacgcgaaa cgtggggcag
     9361 ccagttcgcg gaggtagtgc cgaccacgat tctgcgcatt gctcaggaag tgggcggcgt
     9421 taccgccgcg gcattcgcgc cggacggtac catgctcggc ttcgttttcg ggattacggg
     9481 cgtccgcgac ggtgagctgg cgcactggtc cgacatgctc gccgtacgcg ttggtgctcg
     9541 cgacatggga ctcggaaaga agctcaaggc ataccagcgc gatcttctgc tcgagatcgg
     9601 cgtgcgcagg atgtactgga cgtacgaccc cctcgttgca cggaatgcct atctcaatct
     9661 catgcagctc ggcgcgcgcg tggtcgagta tcgcacgaac ttctacggcg aagacaccgg
     9721 cagcgtgatg cacggcgctc tcggtacgga tcgcttcata gtcgtctggc agctggatcg
     9781 cgaaggtccg cgtgacgacc acccggacat gggagattgg acgaacactc ctctcataga
     9841 cgaagtgctt ccagatagtc ttcccgatga tgcacgggta cgggtcgcga taccgaatga
     9901 tatttttgca gtactcgacg ccgacccaaa gcgcgcggtc cagtggcgtg agactactcg
     9961 caccgccctg acgacatatc tcaatcgcgg atattccgtg ctcggctttc tccgcggcaa
    10021 tgacaccgaa cgcggcacct atctactcgc acgatgacac gcaataacgg actcaaccga
    10081 tgattcgaat tcaggaaatc acgcttcacg aaatccagct tccgctcaag gagccgtttc
    10141 gcatctcgtc cgggttgtgt accgaaaggc gaatcatgct tctcaaggtg cgcgacgccg
    10201 acggggttgc ggtatggagt gaatgtgtcg ccggcgagcg tcccaactat gcgtctgaaa
    10261 cgatagacgc tgcatggctc gtgatcagtg aatacgtcgc gccacgcgtg ttcggaactg
    10321 aattcgagca ggctgcacac attcatgccg cgctggacgt caacttccgc ggtcacaaca
    10381 tggcgaaggc ggcgatcgag atggccgcct gggcgctggt cgccgagcgt gacggcatgc
    10441 cgctcgcacg gctgctcggc ggaacgcgca ccgagatccc gacgggaatc tccataggaa
    10501 ttcaggccac gcccgaagcg ctggtcggcc gggtagggcg tgcactcgcc gacggatatc
    10561 gcaagatcaa gctcaagatc gagcccggac acgacctgga ctttatccgt gcggtgcgca
    10621 acgcgtatcc ggatgcgcca ttgatggccg acgcgaacaa cgcctacacg ttgaaggatg
    10681 cggcgcatct caagcagctc gatccactcc atctggtgat gatcgaacag ccgctcgcgt
    10741 acgacgacat cgtgcgtcac gcggagcttc agcacatgct cacgacgcca atctgtctgg
    10801 atgaatcgat aaccagcgtc gatcgcgccg aggacatgat cacactcaag agcggtcgca
    10861 tcatcaacat caaacccggt cgcgttggtg gatttcagca ggcacgcgca atccacgatc
    10921 tgtgtgccaa gcacgggata ccggtctggt gcggtggcat gctcgagagc ggcatcggtc
    10981 gctcctacaa tgtcgctctc gcctcgctcc cgaacttcac gattcccggc gatctgagcc
    11041 cgagcgcacg ctactgggag cgcgacgtca tcaagcccga gtggacgatg agtgccgacg
    11101 gaatgatgaa ggtgccgctg gaccagcccg gcatcggtgt cgccgtcgac gaggatcgca
    11161 tccacgacct cacggttcgc tccacaacgc tcagcgcgaa gtaacgcgga aagaaactga
    11221 aatgccgaca aaaacagcaa tcgataactc cgcgccgcac gttcccgatt cagtgcgtgc
    11281 gctcttcccc gatgatctcg cccttcagct ctcggcgctg cgccgcgatc tgcatcacaa
    11341 ccctgagctg tcgtggcagg agaagcggac gtcggatctg ctggcggcta cactggaagg
    11401 gttcggcgtc accgacatca agcgcgtcgc gaacaccgga ctcgttgcgc gtgtgccagg
    11461 tcgcgatcgc tcagcgccag tcgtcgcgct gcgtggggac atcgatgcgc tcccgatcca
    11521 tgaagatacc ggactgccgt tctcgtcagc gaacgatggc gtgatgcacg cgtgcggcca
    11581 cgacgtgcac gcgagctggg ccgtcgctgc aactcgcttg ttgctcgaat cgcctgcgaa
    11641 gggcgatgtc ctcgtcgtct ttcaacctgc ggaagaagtt ggcgagggcg cacgcgcgat
    11701 actcgcgacc ggtgcgctcg actcggtgcg cgcaatattc ggcggtcacg tcgatcgccg
    11761 attcgaggtg ggccagatcg tcgcgcagga aggcgcgctt gctgcatcca cagatacgtt
    11821 ccgcatcaca ctcacgggag caggctcgca tggcgcgcgt ccgcacgagt cgcgcgatcc
    11881 gatcgtcggg gcaggggcgc tcatcggcgc gttgcagacc atcgtgtcac gccagctcga
    11941 tcccgcgaag cctggcgtgg tgacggtcgg aacgatcaag ggtggaagcg caccgaacat
    12001 cataccggat agcgtcgagc tgagcggcac cattcgcgcg acgactgcag aaacacgtac
    12061 gttgctcacg ggcgaggtac agcgtatcgc tcaggcaatc gccgccacgt acgggctcac
    12121 tgcgacagtt gtgctcaagg gcggaactcc accaatcgta aatcccgcca tcggcgccaa
    12181 ctgggcgcgc gaagccgtca ctcacgtact aggcgcagat gcactcgtcc cgctcggcac
    12241 caccaacatg ggcggtgagg atttcgccga gtacatccag aagattcccg gctgcttcat
    12301 gcgaatcggt gcgcgcgaga agggtggtcg cgtgattgcc gcgcattcgc cggggtatta
    12361 cgcatctgaa gacgcgctgt tcatcggtgc tgcggtgctg gcggaatgcg cccgcgttgc
    12421 ctcggctgcc ctgtaattga tcgcgtccgg gtagggcgcg gatttatccg caatcgaact
    12481 tggagtcgtc attcccgcga acgcgggaat ccattctccc tcagtaatcc accggccgca
    12541 gatacgattc gccaatcgcc gtcggactca gcatcgcgac cgtcggaagc ttgcgcttcc
    12601 agtgagttga accgagccgc ttgcgcacga tctccacatc acctgcagcg aaaccgtgcg
    12661 ctactatttc ttcggctgta tatcccgtca gcaaccagtt gagaatcgcg tcggcctttg
    12721 cgtatgagat gccgaagtca ccctcatcgg tctgaccctg aataaggtcg gctgacgccg
    12781 gcttgttgat gatcgcctcg ggaacgccga gaaaccttgc aagctcccac acctgtgtct
    12841 tgaagagatc tccaagcgga ttgatgggtg gcgaatcgtc ggcgtgccag gtgaagtaac
    12901 cgaatagccg ctcggtcttg ttgcctgtac cgactggaag tgcatggtac ttcgccgaca
    12961 ggtcgaacag tgcgatcatg cgcatccgcg ccatcacgtt gccgcgacga gatgcgtccg
    13021 catcgctctc attcgcaaga tatccgtcca ccgcagccga gatgtcgatc gtacgatcaa
    13081 ccacgccgag tgcgtcgatc acgagcttcg catgttccag cgattgtgga ttgctcgtgc
    13141 ggtagggcat ccgaaccgca atggtattcg gcgcgccgag cgcgcgggcg cagagaaatc
    13201 ccgtcacagc ggagtccacg cctcccgaca tgccgactac ggccttctcg aaaccacggc
    13261 gtttgaactc cgcccgcaga aacgcaacca gccattccgt cgtgagctcg cagtcgagcg
    13321 cgagtggagg cggcgttgtg cctgtgacta tcggcgcgac gcgcttcacg atcggctact
    13381 cgcgctcacc ggcgcgtccg agcgagcgca gcatgtgcgg caacattgtt ctgaggtccg
    13441 caagcaaggg cgaagatgcg cgggcgcgtg tgatgtcgcc caggtcgagc gtgaccgcca
    13501 tcgaagcctc ctcccacagt ggtgcgcgcg cgcggatgtc tccgtgcggc cccgcgatga
    13561 cagagccgcc aggaaatgcc ttgccgcctt cgttgccagt gagctggatc agtgctacga
    13621 acacaccgtg ctcttccgcg cgatcgcgtg cgagacgctc ccagcgatgc atgcttgccg
    13681 gcccgcggat ctcttcatcc ggttggggcc acgcgccgcg cgccggagat gcggacggaa
    13741 cgaagatgac ctgcgcaccg tcgagcgccg ccgctgtggc ggtgagcgcg tgccacgcat
    13801 cctcacagat gaggattgca gcgcggcccc aacgtgtgtc gaacgcgcga attccgatcc
    13861 catgctcgac gaatctttcc tcgtcgaaca a
//
LOCUS       DATIMD010000524         3100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2521586, whole genome shotgun sequence.
ACCESSION   DATIMD010000524 DATIMD010000000
VERSION     DATIMD010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3100
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2521586"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..438)
                     /locus_tag="VLI40_11735"
     CDS             complement(<1..438)
                     /locus_tag="VLI40_11735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HSU97894.1"
                     /translation="MKRVPDSTVRRLSLYLGFLEELEESGEATVSSDVLARLGGTTSA
                     QVRKDLSIFGSFGKRGLGYFVPELTTRLRDILGLGRDWHVAIVGAGKIGLALAQYPGF
                     REKGFHVSALYDASPAKVGTRLDSIPVRDVHRLADDAAKEHFDI"
     gene            527..1759
                     /locus_tag="VLI40_11740"
     CDS             527..1759
                     /locus_tag="VLI40_11740"
                     /inference="COORDINATES: protein motif:HMM:NF014344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase family protein"
                     /protein_id="HSU97895.1"
                     /translation="MPVNINSEIGSLRSVLVHEPGPELLAVTPDTREDYLYDDIIHVE
                     TAQTEHRRLVAVLERFATVHYVRDLLAETVATVEARHLIIREAMDILQSAPIAKDLND
                     LPPEDVVRVLIEGREERPGPLARTLNETGYALPPVPNLFFTRDTAMGLGKHVMIGSMR
                     YGTRWTEELIMKTLFAHHPLLANAGILYDGSVERRVNYTLEGGDVHPLRPDLLMIGFS
                     ERSSPAAIDELVSLVFGNTAVTNIIVVVMPKENTAIHLDMIFTQVDREQCVIHAPHFI
                     GAERLSILHWSKGDATMREMPNVFVALQECGMRMEPIVCGGKKRIMQEREQWASGCNF
                     FAIRPGLALSYARNHETLREMESAGYRVVGSTSFLEGQERIEDGERAVLTIDGSELVR
                     GGGGPRCMSCPIEREDIW"
     gene            1756..2460
                     /locus_tag="VLI40_11745"
     CDS             1756..2460
                     /locus_tag="VLI40_11745"
                     /inference="COORDINATES: protein motif:HMM:TIGR00573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSU97896.1"
                     /translation="MSDAVTRAVGSTMDLSRLSYAVVDVETTGGSPAYGHRITEIAVV
                     VVSEGRITEIFERLVNPDRFIPPFITHLTGISERMVATAPRFEEIVPELVMALAGNIF
                     VAHNAQFDWGFVSAELERAVGKTPTALRLCTVRLARALLPQLPRKSLDHVAHHYGVLD
                     VASRYPLKRGTRHSAAGDAIITAHCLLRLIDDAADRGFTTWDDIQRATSRGSRGGRKA
                     RRASPMPTGALDDRTA"
     gene            2479..>3100
                     /locus_tag="VLI40_11750"
     CDS             2479..>3100
                     /locus_tag="VLI40_11750"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSU97897.1"
                     /translation="MPAPTPLVQSRRIGALNVHAIQAGGQRLDGGAMFGVVPKPLWER
                     RIPADERNRIQLGMRCLLIEHPSGLILIDSGAGNKENAKFHDIYGVENAGANGRTALE
                     DGLAQVGISPEQIAFLISTHLHFDHAGGNTFVDEAGLVRPTFPRARYFVQRGEYEFAT
                     HPNERTAASYFDRNYVPTLESGQLELLEGESEIVDGIGVILTPGHTP"
BASE COUNT          611 a         1011 c          946 g          532 t
ORIGIN      
        1 gatatcgaag tgctcctttg ccgcatcatc cgcaagccgg tggacatcgc gcaccggaat
       61 cgagtccagt cgcgtcccga ccttggccgg cgacgcatcg tacaacgccg agacgtggaa
      121 gcccttctcg cggaagcccg gatattgcgc cagcgccagg ccgatcttgc cggcgccgac
      181 tatcgccacg tgccagtcgc gcccgagtcc gaggatgtcg cgtagccgcg tcgtaagctc
      241 agggacgaaa taacccagcc ctcgcttccc gaacgagccg aagatggaca gatccttgcg
      301 cacttgcgcc gaggtggtcc cgcccagacg ggcgagaaca tcactggata ctgttgcttc
      361 accgctttct tcgagttctt ccaggaatcc gagataaagc gaaagacgac gaactgtgga
      421 gtcgggtacg cgtttcaaat gtggaacggg cttgtgaaat tcttcacaaa ggtatgataa
      481 aggccccgaa gaccgcaagt tgaccgcgcc gctatcttac gaaaagatgc cagtcaacat
      541 caattcagag atcgggtcac tgcgatcggt actcgtgcac gagcccggtc ccgagctcct
      601 cgcggtcacc ccggacaccc gcgaggacta cctgtatgac gacatcatcc acgtggaaac
      661 cgcccagacg gagcaccgcc gcctcgtcgc ggtcctggaa cggttcgcga ccgtccacta
      721 cgtgcgcgac ctgctcgcgg agaccgtcgc gaccgtcgag gcgcgccatc tgataatccg
      781 cgaggcgatg gacattctcc agtccgcgcc gatcgccaag gacctcaacg accttccgcc
      841 cgaagacgtc gtgcgcgtcc tgatcgaagg gcgggaggag agacccggcc cgctcgcgcg
      901 cacgctcaac gaaaccggct acgccctccc accggtcccg aatctcttct tcacgcgtga
      961 caccgcgatg ggactcggca agcacgtcat gatcggctcc atgcggtacg gtactcgctg
     1021 gaccgaagag ctgatcatga agacgctctt cgcgcatcat ccgctgctcg cgaatgccgg
     1081 aatactgtac gacggatccg tcgagcggcg cgtgaactat acgctcgaag gcggtgacgt
     1141 gcacccgctc cggccggacc tgctgatgat cggattcagc gagcgatcca gtccggcggc
     1201 gatcgacgag ctcgtgtcgc tggtgttcgg caacactgca gtcacgaaca tcatcgtggt
     1261 cgtgatgccc aaggaaaaca ccgccatcca cctcgacatg atcttcacgc aggtcgatcg
     1321 ggagcaatgc gtcattcatg caccgcactt cattggcgcg gagcggctgt cgattctgca
     1381 ctggagcaag ggcgatgcga cgatgcgcga gatgcccaac gtctttgtcg cgctgcaaga
     1441 gtgcggcatg cgcatggaac cgatcgtctg cggcggaaag aagcggataa tgcaggagcg
     1501 cgagcagtgg gcgtcggggt gcaacttctt cgcgatacgt ccgggactcg ccttgagcta
     1561 tgctcgcaat catgagacgc tgcgcgagat ggagtctgcc ggataccgcg tggtcggctc
     1621 gacgtcgttc ctcgaaggcc aggagcggat cgaggacggc gagcgcgccg tgctcaccat
     1681 cgacggcagc gagctcgttc gcggcggcgg cggcccgcgc tgcatgtcat gccccatcga
     1741 gcgggaagac atctggtgag cgatgcagtg acccgcgccg ttggcagcac gatggatctg
     1801 agccgcctgt cgtacgccgt tgtggacgtc gagacgacgg gcggcagtcc tgcgtacggc
     1861 catcgcataa ccgagatcgc ggtagtcgtc gtatccgaag gccgcatcac cgagatattc
     1921 gagcggctgg tgaatccgga tcgcttcatc ccgccgttca tcacgcacct cacaggcatc
     1981 agcgagcgca tggtcgcgac ggcaccgcgc tttgaggaga tcgttcccga gctcgtgatg
     2041 gcgctcgccg gcaacatctt cgtcgcgcac aacgctcagt tcgactgggg cttcgtgagc
     2101 gctgagctcg agcgcgcggt cggaaagacg ccgaccgcgt tgcggctgtg cacggtgcgg
     2161 ctggcgcgcg cgctgcttcc gcagctcccg cgcaaatctc tcgatcacgt cgcacatcac
     2221 tatggagttc tcgatgttgc atcgcgctat cccctcaagc gcggtacgag acatagcgcg
     2281 gccggcgacg cgataatcac tgcgcactgt ctgcttcggc tcattgacga cgccgcagat
     2341 cgcggcttca ccacctggga cgacattcag cgcgccacga gtcgcggatc tcgcggtggc
     2401 cgcaaggctc ggcgcgcgtc gccaatgccg accggcgcac tcgacgatag aaccgcgtag
     2461 gaatacaggt accacatcat gccagcaccc acgccactcg tacaatcgcg tcgcatcggc
     2521 gccctgaacg tccacgcgat acaggcaggc ggacagcgac tcgacggtgg cgcgatgttc
     2581 ggcgtcgtgc ccaagccgct gtgggagcgt cgcatccccg ccgacgagcg caaccgcatc
     2641 cagctcggca tgcgctgcct gctcatcgag catccgagcg gtctcattct catcgacagc
     2701 ggtgcgggga acaaggagaa cgcgaagttc cacgacatct atggcgtcga gaacgccggc
     2761 gcaaacggtc gtacggcact cgaagatgga ctcgcacagg taggcataag ccccgagcag
     2821 atagcgttcc tgatcagcac gcatctccac ttcgatcacg ccggcggcaa cactttcgtc
     2881 gatgaggccg gcctggtgcg ccccaccttc cctcgcgccc gctacttcgt gcagcgtggc
     2941 gagtacgaat tcgcgaccca tccaaacgag cgtaccgcgg cgagttactt cgaccgcaac
     3001 tacgttccga cgctcgaatc gggtcagctc gagctgctgg aaggcgagtc ggagatagtc
     3061 gatggcatcg gcgtaatcct gacccctggc cacacgccat
//
LOCUS       DATIMD010000525         8232 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1371460, whole genome shotgun sequence.
ACCESSION   DATIMD010000525 DATIMD010000000
VERSION     DATIMD010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8232
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1371460"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1146)
                     /locus_tag="VLI40_11755"
     CDS             complement(<1..1146)
                     /locus_tag="VLI40_11755"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU97898.1"
                     /translation="MTALRANKMRSILTMLGVVIGVGAVIAMVAIGNGAQEAVKARIS
                     ALGTTLISISPGQIFSRGLASATDRAKLTMADAEALRVNAKLITQVEPEMQKQAQVQY
                     LNKNTSTDIYGTTPNYPQVRLYTIASGRMFTNAEDKGSQLVAVLGDAVLQDLGITNGE
                     SVIGETIRIQGIQFRIIGTLAPKGQGTGFGNPDDEVLIPITTMRYRIYGRDQLRTINV
                     LAPNDSLVTATMAEAQSILARAHRLRPGAESDVNIRSQADFLNTLGETTATFTYLLAG
                     IAAVSLIVGGIGIMNIMLVSVTERTREIGVRKALGATRLNILLQFLIEAVVLCMLGGI
                     GGILIGGGGALAMTKIANWNASISVSAVLVAFAFSAIVGILFGVWPAR"
     gene            complement(1176..2801)
                     /locus_tag="VLI40_11760"
     CDS             complement(1176..2801)
                     /locus_tag="VLI40_11760"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSU97899.1"
                     /translation="MNGRTKLLLALAVTSIGACSKKKNDQAAVPTVEVGRRDIIVTAQ
                     ATGTVEPEDTVPVKSQASGLVMKMPVEIGQVVKPGDLLVQIDTRTLNNDYQRTKSAEA
                     AAKANVTVTQAALQRANDLYAQKVITADEHETAIINAANATSQLVAAQAALSTAQQNL
                     DYATLRSQVSGTVISKTAAVGTVVSSATSNVGGGSTILTVADLHHVRMQALVNETDVG
                     NVHQGMPVSVTIDAFPGRTFAGTVEKVQPQAVIQNSVTMFPVLVSLPNTDLSLLPGMN
                     GEVSIITQQRRNVVAVPNDAVRSVKDAIDIGAELGISPDTMDALGVRRGGGGFGGGAG
                     GAGGAGGAGGARAGGGRGGAGGRGGAGGRGGAGGSGGGGFGGGITVPDSVCTGVMAKL
                     NKVNARPLLDSVRAQMRAGTIDSTAARKKTEAIYKSASVTADTARACMRAAFGGGGGS
                     GAIGAPVVAFVKTPTGWSPRMVRLGVSDFDYTEVISGLKEGDQVGLLSTIALQASRDR
                     SSARARSMVGGALPGGSSTPAGGRPAGGGGGPR"
     gene            complement(2798..4093)
                     /locus_tag="VLI40_11765"
     CDS             complement(2798..4093)
                     /locus_tag="VLI40_11765"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSU97900.1"
                     /translation="MSAGTQPVTLAEAIRLAQQNSPQTVAARGSVQSGKAEVRSAYGA
                     FLPSITANFGAGRQFTGAGQLTRVNSSGEKVTIAGNQWNYSNSLGFNAELFNAANIPN
                     VRAAKADVAAATQSVITQSFTVALNVEQQFYAALSALESEDAARTQLAQAIQQLDASR
                     RRVVAGAATASDSLTAVVQVANAQLALRSAQNQRRDANAALTRLTGSPTPLSAALNDP
                     EVTARDTIQIDSAAVVARAAASPTIQQARAQLAAAEERRNAARATYIPTLNASYSRGG
                     TGTGVYGFGNDPFVYSGQLNLSLSIPIFNGFVREGQITNATVTQTNAAATLRDTRLAA
                     QQLSVQYIDAVRLGQEQVAVQTASIAAATENVRVVQQRYNLGLSTIVDLLTAQTTLNQ
                     AQANLIAARNTVRLATAQIEALIGQPLVTVTTGMNGVTR"
     gene            4256..5968
                     /locus_tag="VLI40_11770"
     CDS             4256..5968
                     /locus_tag="VLI40_11770"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014414.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HSU97901.1"
                     /translation="MYRPRRAPCAVAATLAASAGLCVSGFSPEGSKNIRPLITSLQIA
                     TVKRLELPSRGQSSATRGPRPRRATAARFMQHESSNHTRALGAHGVHGHMGTGIDRKQ
                     ARTRRRLMDDPAQASAVPDAHQAPTPAPPIYPKTSREFEAARTALEILFGPPEERAFA
                     VQFWNGEVDGANDPTPAFTLVLNHPGTLRRMLHPPFELSICEAFIAADFDIIGDIERA
                     TALESNLRGGLASPFRLARLTRALLTLPVGDTPAPHPVVRAPETGALHTPERDAAAVR
                     SHYDVGNDFYKLWLDKRMVYSCGYFTDLGATLDEAQEAKLEHICRKLRLSPGEKMLDV
                     GCGWGGLIMHAAERFGVNALGITLSYEQAALARERIKEKGLESRCTVEVRDYRHLTAD
                     QEFDKIASVGMVEHVGRAKLPVYFERLFRYLRPGGLLLNHGIVHAASHQKPKLRDRVF
                     ERLWGDNAFINTYVFPDGELPELSEVVSTAEAAGFETRDAESLREHYALTLRKWVQKL
                     EAERAAAVASVGEEIYRIWRLYMAASAYGFASGRLAIDQLLLAKRRDDGSSEIPLTRA
                     DIYS"
     gene            5993..6841
                     /locus_tag="VLI40_11775"
     CDS             5993..6841
                     /locus_tag="VLI40_11775"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HSU97902.1"
                     /translation="MQSRFHGIKLLSACASLAILPIAPAAAQQVVSQTANDTSVHHAI
                     LGRSDAITAAAFVLGTAAVMPLDRHIAVESQRKSLQNNAALGHAMTGFRVLGEPGSII
                     IAGATYVYGRAEDSPRSAEIGLRTIESIGAAGLTSLVIKGFAGRARPFVTSDTNPHRY
                     KFGRGFHDDDYTSFPSGHVTTAFAAASAASQEITYLWPHASRLWTPVLFTSASLVGVA
                     RIYEDKHWASDVVAGAAVGTLVSRAVVHYARAHPHNVIDRWLLPVGVSQMSGGRAMTF
                     VWDYRW"
     gene            complement(6880..>8232)
                     /locus_tag="VLI40_11780"
     CDS             complement(6880..>8232)
                     /locus_tag="VLI40_11780"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSU97903.1"
                     /translation="AGEDGRYMFCTASAGADNRNRLYFADLGDPMHPNVSTPLTSIVS
                     EDLAQFQVIGNVGSTAYILTDDGSPNRRIVSLDLATADRAHMRTVIPESKFAIESATM
                     AGGRIVVQYLEDVKSIVRIFDALGKPLGAIPLPGVGTVSGLSARNDTPEMFYAFTSPL
                     VPASVYRFNVESRETSAFEPTKLTFDPAAYETRQVFATSKDGTKIPLFITMKKGAVLD
                     GSHPTILYAYGGFDVSVLPAFSPAIPAWVERGGIYVTANIRGGGEYGEAWHEAGMLAK
                     KQNVFDDFIASAEYLIAEKYTSSRKLIMQGGSNGGLLVGAVSTQRPDLFAVALPAVGV
                     MDMLRYDRFTGGAAWVTEYGSSSDSTMFPILLKYSPLQNIRTGTCYPATLATTADHDD
                     RVVPSHTYKYIAALQAAQACPKPVMVRIETQSSHGYRPTTKLIAEIADELTFALVNTP
                     "
BASE COUNT         1487 a         2646 c         2423 g         1676 t
ORIGIN      
        1 gcgtgctggc cacacaccga acaatattcc gacaatggcg gagaacgcga acgcaactag
       61 taccgcgctc acggaaatcg atgcgttcca gttggcgatc tttgtcatgg ccagtgcccc
      121 tcctccgcca atcagaattc cgccgatgcc gccgagcata cagagcacca cggcctcgat
      181 caggaactga agcagaatgt tcagtcgcgt cgcacccagg gccttgcgca caccgatctc
      241 acgcgtgcgc tccgtcaccg acacgagcat gatgttcatg atgccgattc cgccaacgat
      301 gagactgacc gccgcgatgc cggcgagcag gtacgtgaac gttgcggttg tttccccgag
      361 tgtattgagg aagtctgcct ggcttcggat gttgacgtcg ctctccgcgc ccggccggag
      421 ccgatgcgcg cgtgcgagaa ttgactgcgc ctcggccatc gtcgcagtca cgagcgagtc
      481 attcggggcg agcacgttga tcgtgcgtag ctgatccctt ccgtagatgc gatagcgcat
      541 cgtcgtgatg ggaatcagga cctcgtcatc cggatttccg aaaccggtgc cctggccctt
      601 cggcgccagc gttccaatga tccggaactg aatcccctgg attcgtatgg tctctccaat
      661 gactgactcg ccattggtga ttcccaggtc ctgaagtact gcatctccga gcaccgcaac
      721 cagctggctg cccttgtcct ccgcgttcgt gaacatgcgc ccggacgcga ttgtgtaaag
      781 gcgaacctgc ggatagttcg gcgtggtacc gtagatgtca gtgctcgtgt tcttgttgag
      841 atactgcacc tgagcctgct tctgcatctc cggctcgacc tgcgtgatga gcttcgcatt
      901 cacacgaagc gcttccgcat ccgccatggt cagtttcgca cggtcggtgg ctgacgccag
      961 accgcgcgaa aatatctgtc ctggtgatat cgagatcagg gtcgttccga gcgcggagat
     1021 cctcgccttg acggcctcct gcgctccatt tccgatcgcc accatcgcaa tgaccgcccc
     1081 gacgccgatg actacaccga gcatcgtgag tatcgagcgc attttgttgg ctcgaagtgc
     1141 tgtcattgcg atcgacaggg tttccccaac cggcatcatc ttgggccacc tcctccgcca
     1201 gccgggcgtc cgcctgctgg tgtgctgctt ccgcccggta gtgctccacc gaccatcgac
     1261 cttgcacgtg cactcgacct gtcgcgcgac gcctggagtg cgattgtcga gagcagcccg
     1321 acctgatcgc cttccttcaa gccgctgatc acttcagtgt aatcgaagtc gctgactccg
     1381 agtctcacca tacgtggcga ccatcccgtc ggcgtcttga cgaatgctac gactggcgcg
     1441 ccaatggcgc ccgagcctcc gccaccaccg aatgctgcgc gcatgcatgc acgcgccgta
     1501 tctgccgtga cgctcgcact cttgtagatc gcttccgtct tcttgcgagc tgccgttgaa
     1561 tcaatcgtgc cagcacgcat ctgggcacgc accgagtcga gcaaggggcg tgcattgacc
     1621 ttgttgagct tggccatgac gccggtgcag actgaatccg gcaccgtgat tccgcctccg
     1681 aacccgccac caccacttcc accggcacca ccgcggccgc cggcgccacc gcgcccgccc
     1741 gctccgccac gacctccgcc cgcgcgggcg ccaccagcgc cgccagcgcc accggcaccg
     1801 ccagcaccac cgccgaatcc gccgccacca cgacgcacac cgagggcgtc catggtgtcc
     1861 ggactgatgc ccaattcggc gccgatatca atcgcgtcct tcacgcttcg gacagcgtcg
     1921 ttcggtaccg ctactacgtt gcgccgctgc tgcgttatga tggatacctc gccattcatg
     1981 ccgggcagca gtgacaggtc cgtatttggt agagaaacca gaacagggaa catggtaacg
     2041 ctgttctgaa tcacagcctg tggctgaacc ttctcgacag taccggcgaa cgtacgaccc
     2101 gggaatgcgt cgatcgtgac cgacaccggc atgccctggt gaacgtttcc gacgtcggtc
     2161 tcgttgacga gcgcctgcat gcgaacgtgg tgtagatcgg ctacggtgag gatcgtgctg
     2221 ccgccgccaa cattcgaggt ggccgacgag acaaccgtgc cgacagccgc ggtcttgctg
     2281 atgaccgttc cggacacctg cgacctgagc gttgcatagt ccaggttctg ttgggccgtg
     2341 ctgagtgctg cctgcgcggc caccagctgc gacgtggcgt tagccgcgtt gatgatcgcc
     2401 gtctcgtgtt cgtcggccgt tatcaccttc tgcgcgtaaa gatcgttcgc gcgctgcagc
     2461 gcagcctggg taaccgtgac gtttgctttc gccgccgcct cggcggactt ggtgcgctgg
     2521 taatcgttgt tcagagtgcg cgtgtcgatc tgaaccagca gatcgcctgg cttgaccacc
     2581 tgaccaatct ctacgggcat cttcatcacg aggcccgacg cctgtgactt caccggcacc
     2641 gtgtcttccg gttcgacggt tcccgttgcc tgagccgtga cgatgatgtc gcgacgtccg
     2701 acctcgaccg ttgggaccgc tgcctggtca ttctttttct tgctgcacgc gccgattgac
     2761 gttaccgcca atgcgaggag cagcttggta cgtccgttca tcgtgtgact ccgttcattc
     2821 cggttgttac ggtgacgagt ggctgcccaa tgagtgcttc tatttgcgcc gttgccaacc
     2881 gtactgtgtt gcgcgcggcg atgaggtttg cttgtgcctg attcaatgtc gtctgagctg
     2941 ttagcaagtc tacgatcgtt gagagtccga gattgtaccg ctgctgcacg acgcgcacgt
     3001 tttcggtcgc cgcggctatc gaagccgtct ggaccgctac ctgttcctgt cccaatcgaa
     3061 ccgcgtcgat gtactgcacg gacagttgct gcgccgccag ccgcgtatcg cgtagcgttg
     3121 ccgctgcgtt ggtctgggtg actgtagcat tggtgatctg tccttccctc acgaagccgt
     3181 tgaagatcgg aatgctcaac gacaggttga gctgaccgct gtatacaaac ggatcgttgc
     3241 cgaagccgta cacgcccgtt ccggtgccgc cgcgcgaata gctggcattc agagtcggta
     3301 tgtatgtggc gcgggcagca ttccgtcgct cttccgcggc ggcgagctgc gcacgtgcct
     3361 gctgaatggt cggtgatgcc gcggccctcg cgacgacggc cgcgctgtca atctgaattg
     3421 tgtcgcgagc cgtgacttcc ggatcgttca gggccgccga caggggcgtc ggagatccgg
     3481 taagacgcgt gagcgcggcg ttggcgtcac gccgctgatt ctgcgccgag cgaagcgcga
     3541 gctgtgcgtt cgcaacctgc acgacggccg tcaacgaatc ggacgccgtc gctgcaccag
     3601 ccacgacacg ccggcgtgac gcgtcgagct gctgtatcgc ctgcgcaagc tgagttcgcg
     3661 cagcgtcctc actctcgagc gccgatagtg cggcatagaa ctgctgctcc acattgagcg
     3721 caacggtgaa cgactgcgtt attacactct gtgttgccgc cgcgacatct gccttggccg
     3781 cacgcacgtt cggaatgttt gccgcgttga acaactcggc gttgaaaccg agagagttgc
     3841 tgtagttcca ctggttcccg gcgatcgtca ccttctcccc ggacgagttc acacgggtaa
     3901 gctgtcctgc acccgtgaac tgccggcctg cgccgaagtt cgccgtgatg ctcggcagga
     3961 acgcgccata agcgctgcgt acctccgcct tgccggactg cacacttcca cgggccgcaa
     4021 cggtctgcgg cgagttctgc tgcgcgagcc ggatggcctc cgcaagcgtg actggctgcg
     4081 tgccagcgct cacggagtcc tgggcccgcg cgacgccctg tgccccggcg gcgacgccag
     4141 gaaggactgc ggctcccagg ataagaagaa gccggcctcc tgtccgtccc gcggtcctga
     4201 cgccccaacg gccggaaatt cctctaggct gcaattgaat tgtcatgaaa gttgtttgta
     4261 ccggccgcgg cgggcaccgt gtgccgtcgc tgccacccta gcagcgtccg ccggcctctg
     4321 cgtttccggc ttttcgccgg agggatcgaa aaatattcgg ccccttataa catcattaca
     4381 gattgctacg gtaaaacgtt tggaattgcc ttcccgcggc caatcttccg caacccgcgg
     4441 cccgcgaccg cggcgagcaa ctgctgcgcg atttatgcaa catgagtcct cgaaccacac
     4501 acgcgccctg ggcgctcatg gagtgcacgg ccacatgggt actggtattg atcgcaagca
     4561 ggcacggaca cgccgccgcc tgatggatga cccagcacaa gcttccgcag ttcccgacgc
     4621 tcatcaagcg ccaactcccg cccctccgat ctacccgaaa acctcccgtg agttcgaagc
     4681 cgcacgtact gccctggaga tccttttcgg gccgcccgag gaacgagctt tcgcagtcca
     4741 gttctggaac ggagaagtcg atggcgccaa cgatcctacg cccgccttca ccctcgtgct
     4801 gaaccatccc ggaacacttc gccggatgtt gcacccgccg ttcgagttgt ccatctgcga
     4861 agccttcatc gcagccgact ttgacatcat cggcgacatc gagcgggcga cggcgctcga
     4921 aagcaaccta cggggcgggc tcgcaagccc tttccgtctc gcgcgactca cccgcgcgct
     4981 actgaccctt cccgtcggcg acactccggc gcctcacccg gtggtcagag cgccggaaac
     5041 cggtgctctc cacacccccg agcgcgacgc tgcggcagtc cgatcccact acgatgtcgg
     5101 caacgacttc tacaagctct ggcttgataa acggatggtc tattcctgcg gctacttcac
     5161 tgatcttggc gcaactctgg acgaagcgca ggaagccaag ctcgaacaca tctgccgtaa
     5221 actccggctg agtccgggcg aaaaaatgct cgacgtcggc tgcggttggg gcggcctcat
     5281 aatgcatgca gcggagcggt tcggcgtcaa tgcacttgga ataacgctga gctacgagca
     5341 agcggccctt gcccgcgaac gaataaagga aaaaggactc gaatcgcgct gcacggtcga
     5401 ggtgcgcgac tatcgtcatc tgacggcaga tcaagaattc gataagattg cgagcgtagg
     5461 catggtcgaa cacgtcggac gagccaagct gccggtgtat ttcgagcggc tcttcagata
     5521 tctgcggccc ggcggtctgt tgttgaacca cggcatcgtc cacgcggcaa gccatcaaaa
     5581 gcccaagctt cgcgaccggg tctttgaaag gctctggggc gacaatgcct tcatcaatac
     5641 gtacgtattt cccgacggcg aactgccgga gctctccgag gtcgtctcga ctgccgaggc
     5701 cgcgggcttc gagacccgcg atgcggaatc gctgcgcgag cactatgcgc tcaccttgcg
     5761 caaatgggtg cagaagctcg aagccgagcg agcggcagct gtcgcgtcag tgggagagga
     5821 gatctacaga atctggcgtc tgtacatggc cgcgtcggcg tacggtttcg cctccggccg
     5881 gcttgcgata gaccagttgc tgctggcaaa gcgcagggat gacggcagct cggagattcc
     5941 actcactcgc gctgacatct attcgtaagc tggagaggtt acacttgatg ccatgcaatc
     6001 tcgctttcat ggcatcaagc tcctctccgc gtgcgcctct ctcgcgatcc tgccgatcgc
     6061 gcctgcagcc gcgcagcagg ttgtgtcgca gaccgcaaac gacacatccg tccatcacgc
     6121 cattctgggt cgtagcgacg cgattaccgc ggctgctttc gtcctcggga cggcggcggt
     6181 catgccgctg gaccgccaca tagcggtcga atcacagcgc aaatcgcttc agaacaacgc
     6241 cgcactcggg catgcgatga ccggctttcg cgtgctgggc gagcccggct cgatcatcat
     6301 cgccggcgcg acgtacgtgt acggtcgggc cgaagattct ccgcgctcgg cagagatcgg
     6361 gcttcgtacg atagagtcca taggcgcagc gggacttaca tcgctcgtca tcaagggatt
     6421 cgccggccgt gctcgtccgt tcgtgacaag cgatacaaat ccacacagat acaaatttgg
     6481 tcgcggattt cacgatgacg actacacgtc gttcccgtcc gggcacgtaa cgacggcgtt
     6541 tgccgcggcg tccgccgcga gccaggagat cacttacctg tggccgcacg catcgcgtct
     6601 gtggacgccc gtgctattta cgtccgcgtc gcttgtagga gtcgcgcgaa tctacgagga
     6661 caagcactgg gcgagtgacg tcgttgccgg cgcggcggtc gggacgctcg tctcccgagc
     6721 ggtcgtgcac tacgcgcgcg cgcatccgca caatgtcatc gacagatggc tgcttccggt
     6781 tggtgtatcc cagatgagcg gcggacgcgc gatgaccttt gtctgggatt accgttggta
     6841 attacgcggt gtaattacgc gtacggtacc cgcatgatct cagggagtat tcaccagcgc
     6901 gaacgtcagc tcgtccgcga tctccgcgat gagtttcgtc gtcggccggt agccgtggct
     6961 gctctgggtc tcgattctca ccatcaccgg tttgggacag gcctgcgccg cctgtagcgc
     7021 cgctatgtac ttgtatgtgt gacttggcac cacacggtca tcgtggtcgg cggtggtcgc
     7081 gagcgtcgca gggtagcacg taccggtccg gatgttctgc aggggagagt acttgagcaa
     7141 tatcggaaac atcgtcgagt ccgacgacga tccgtactcg gtcacccacg cagcgccacc
     7201 ggtgaatctg tcgtagcgaa gcatgtccat gacgccgaca gcaggaagtg cgacggcaaa
     7261 cagatccggt cgttgggtgc tcactgctcc aaccagcaat ccgccgttgg agccgccctg
     7321 catgatcaac ttgcgtgacg acgtgtactt ctccgcgatg aggtattccg cggaggcgat
     7381 gaagtcgtca aatacattct gttttttcgc gagcattccc gcctcatgcc acgcctcgcc
     7441 gtactcgcct ccgccgcgaa tgttcgccgt cacgtagatc ccgccgcgct cgacccatgc
     7501 tggaatcgca ggactgaagg ccggcagcac gcttacgtcg aatccgccat acgcatacag
     7561 aatcgtggga tgtgacccat ccagtaccgc tcccttcttc atggtgatga agagcgggat
     7621 tttcgtgccg tctttcgaag tcgcaaaaac ctggcgggtt tcgtacgcag ccggatcaaa
     7681 ggtcagcttc gtcggctcga acgcgctggt ctcgcgtgat tccacattga accggtaaac
     7741 gctcgccgga accagcggcg atgtgaatgc atagaacatc tccggggtgt cgttccgcgc
     7801 actcaatcca cttaccgtgc cgacgccggg caatggaata gcgccgagcg gcttgcccag
     7861 cgcgtcgaag atccgcacga tgctcttcac atcttcgaga tactggacga cgatgcgtcc
     7921 gccggccatt gtcgcggatt cgatcgcgaa tttcgattcc ggaattaccg tgcgcatgtg
     7981 cgcgcggtcc gcggtggcga ggtcgagcga cacgatacgc cgatttggtg agccgtcgtc
     8041 cgtcaggata tacgccgtcg acccaacgtt gccgatgacc tgaaattgcg ccaggtcctc
     8101 actcacgatg gaggtaagcg gcgtgctcac gtttggatgc atcggatcgc ccagatccgc
     8161 gaagtacagc cggttcctgt tgtccgcgcc cgcgcttgcg gtacagaaca tgtagcggcc
     8221 gtcctcaccg gc
//
LOCUS       DATIMD010000526         3959 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3961773, whole genome shotgun sequence.
ACCESSION   DATIMD010000526 DATIMD010000000
VERSION     DATIMD010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3959
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3961773"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..840
                     /locus_tag="VLI40_11785"
     CDS             <1..840
                     /locus_tag="VLI40_11785"
                     /inference="COORDINATES: protein motif:HMM:NF039902.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HSU97904.1"
                     /translation="GDDHISNTPKQIMLYRALGKELPRFAHLPMIHGLDGKKLSKRHG
                     ATAVGDYQHEGLLPQAMLNFLALLGWSPGGDREVMTLAEMVELFSPEGLQRKAAIFDP
                     KKLEWMNGQHMSMMPLADLEPVVTRAIIAAGLATSEELAARHDWYLQLVDLLRVRARV
                     VDDIVRQAAPYFVDDIPYDPEAVAKQWKDRPAALAILTSTRDALAASPAWDAATLEAE
                     LRGLAERHGIGGGKLFQPLRVALTGLTVSPGIFDVLVMQGRDRAITRLERAIDYLNNP
                     NHG"
     gene            906..1568
                     /gene="lexA"
                     /locus_tag="VLI40_11790"
     CDS             906..1568
                     /gene="lexA"
                     /locus_tag="VLI40_11790"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: protein motif:HMM:TIGR00498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HSU97905.1"
                     /translation="MSEQLTRLESSVYQYLLDFTAEHTYQPSIRDIGKKFEIKSTKTV
                     SDLLQSLARKGYIERDPSRSRGVRLLGFSGAAQSTPVPYYGRIHAGEPALLPEHREGF
                     ITMDRRFLPSDRVFFLKVKGDSMIGRAIENGDFVMIDAAASPKDGDMVAARIGEEATI
                     KTLAHDGQTVVLKAANPADRDIVVNPRDSFGVLGVVCGVFRPFTVLDTESAHTTPSGL
                     VS"
     gene            complement(1636..2472)
                     /locus_tag="VLI40_11795"
     CDS             complement(1636..2472)
                     /locus_tag="VLI40_11795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97906.1"
                     /translation="MQFRRPSGPWITSIAIHVVVAVLFIQAILARHPDFLSFGRPVPA
                     PVVERIGFLALPQPKNHLPPTPGRSGGDGLAKTPSKVQMPAAPTEVPSTVTPPAKGPT
                     VNSIGPSSGPLVGGGGQLRGVQPRYEDPRVWVAPGEIASAPKTDVQRLDSVIKNDIGA
                     FNDSVRVANSGRKPGDWTFEKGGQKYGVDSKYIHLGPFSIPTAVLAMLPLNLTGNPTT
                     YQRNKTLTANHDEIFEQAQRGINDADFEKAVRSIRERKERERKEAEDIKKKAAQDAIS
                     QP"
     gene            complement(2485..3660)
                     /locus_tag="VLI40_11800"
     CDS             complement(2485..3660)
                     /locus_tag="VLI40_11800"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSU97907.1"
                     /translation="MPPYSERITKLPPYPLADIPHRKRALIARGVDIIDLGAGDATLP
                     PPEAALERMTRAIREPAMGRYGFEMGLMEYREAIVRFMKKRFGVTFDPLKEVVPLIGS
                     KEGLAHLALAYLNDDDYAIMPEPGYNAYMGGTILSNGRPYRYELRADNNFLVDLDEVP
                     DDVLARTKILYLNYPGNPTAAIAPMDYLKRVVKQCKERDIVLVYDNAYSEMAYDGYVP
                     PSIFEVEGALDVALEFHSMSKTFNMTGWRCGWACGREELVHALVTVKSFIDTGSYLAI
                     QAAAAAALDVHDEFVPGNVAIFKERRDAAVAAFRENGFTCDVPKAAMYLWIPLPAHIP
                     SKVFADKLMEQEGVIVLAGAAFGAGGEGFFRISFITSPDRIREAAVRAGRVLASFND"
     gene            complement(3661..>3959)
                     /locus_tag="VLI40_11805"
     CDS             complement(3661..>3959)
                     /locus_tag="VLI40_11805"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HSU97908.1"
                     /translation="GFDTFCAIGPESAAPEDLRSLVVLTRVNGVERQRGTAGDMVFPI
                     PDLLSYISGIMTLEPGDVVATGTPAGVGRLAAGDVVEVEIPGFSKVRNPVTNTV"
BASE COUNT          750 a         1230 c         1214 g          765 t
ORIGIN      
        1 ggcgacgatc atatctccaa cacgcccaag cagatcatgc tgtaccgcgc gctgggcaag
       61 gagcttcccc gcttcgcgca tcttccgatg atccatggat tggacgggaa gaagctgagc
      121 aagcggcacg gcgcgaccgc tgtcggcgac taccagcatg aagggctcct gccgcaggcg
      181 atgctcaact tcctcgccct gctcggctgg tcgccgggcg gtgaccgcga ggtgatgacg
      241 ctcgccgaga tggtcgagct gttctcgccg gaagggttgc aacgaaaggc cgcgatcttc
      301 gatcccaaaa agctcgagtg gatgaacggc cagcacatgt cgatgatgcc gctagccgac
      361 ctggagcccg tcgtgacgcg tgcgataatc gcagccggac tggcgacgag cgaggagctc
      421 gctgcccgcc acgactggta tctgcagctg gtcgatctgc tgcgggttcg cgcacgggtc
      481 gtcgatgaca tagtccgtca ggctgctccg tactttgtgg atgacatccc ctacgacccg
      541 gaagcggtgg ccaagcagtg gaaggacagg ccggcggcgc tggccatcct cacctccacg
      601 cgcgacgcgc tcgccgcgtc tccggcctgg gacgcagcga ctctcgaagc cgaactcagg
      661 ggattggcgg aacggcacgg aattggcggc ggaaaactgt ttcagccgct cagagttgct
      721 ctgaccggac tgacggtcag cccaggcatc ttcgacgtac tggtgatgca gggccgcgac
      781 cgcgcgatca ctcgactcga acgggcgatc gattacctta ataatccaaa ccatggttga
      841 ccgctcgaga acggagccgc attttgtgtg ctgcagcgta caacccgaac ccatacggag
      901 cgcatatgtc tgagcaattg acccggctcg aaagctcagt ctatcagtat ctcctcgatt
      961 tcacggctga acacacgtat cagccaagca tccgcgacat tggcaagaag ttcgagatca
     1021 agtcgaccaa gacggtctcg gatctattgc aatcgcttgc tcgcaagggg tacatcgagc
     1081 gtgatccgtc gcgctcacgc ggagtgcggc tgctcggatt cagcggcgcg gcgcaatcga
     1141 cgccggttcc gtactacgga cgcattcacg ccggcgagcc ggctctgctt ccggagcatc
     1201 gcgaagggtt catcacgatg gaccgccggt tcctgccatc cgatcgggtg ttctttctca
     1261 aggtaaaggg cgacagcatg atcggtcgcg cgatcgagaa cggcgacttc gtgatgatcg
     1321 acgccgctgc atcacccaag gacggcgaca tggttgccgc gcgtatcggt gaggaagcga
     1381 cgatcaagac gctcgcacac gatggccaga ctgtagtgtt gaaggccgcc aatccggccg
     1441 accgcgacat cgttgtcaat ccgcgcgaca gtttcggcgt gttgggagtg gtgtgcggtg
     1501 tgttcaggcc gttcaccgta ctcgatacgg agagcgcgca cacgacgccg tcgggattgg
     1561 tttcgtaacg cctcgctatc gtcgtcgtac tgcgggcagg cgcgggggcc tgcccctacg
     1621 ggtgccacgt aaacgctacg gctgcgaaat cgcgtcctgc gcggcctttt tcttgatgtc
     1681 ctcggcttcc ttccgctcgc gctccttgcg ctcgcggatg cttcgcacag ccttctcgaa
     1741 gtccgcgtcg ttgatgccgc gctgagcctg ctcgaagatc tcgtcgtggt tcgcggtgag
     1801 cgttttatta cgctggtagg tcgtcgggtt gcccgtaagg ttgagcggca acatcgcgag
     1861 aacggctgtc ggaatcgaga acgggccgag gtggatgtac ttgctgtcga cgccgtactt
     1921 ctggccgccc ttctcgaacg tccagtcacc gggctttcta ccgctgttgg cgacacgaac
     1981 ggaatcgttg aacgcaccga tgtcgttctt gatcacacta tcgagtcgct gcacgtcggt
     2041 cttgggtgcg ctggcaattt cgccaggggc gacccataca cgcggatcct cgtaacgcgg
     2101 ttgaacaccg cgtagctgtc cgccgccgcc aacgagcgga ccactcgacg ggccgatcga
     2161 gttcaccgtt ggccccttgg ccggtggcgt aaccgtggac ggaacttcgg tcggcgccgc
     2221 cggcatctga accttgctgg gcgttttcgc cagcccgtcg ccgccgctcc tccccggggt
     2281 tggcggcaga tggttcttcg gctgaggtaa cgccaaaaat cctatccgct cgaccaccgg
     2341 tgcgggcacc ggacgaccga acgagaggaa gtccggatgc cgcgccagga tcgcctgaat
     2401 gaacagcacc gcgaccacca cgtgaatggc gatcgaggtg atccagggac ctgacggacg
     2461 gcggaattgc atgtctgcta cggcctagtc gttgaacgaa gcgagcacgc gtccggcacg
     2521 cactgcagct tcgcgaatgc gatccggtga cgtgatgaac gagatgcgga agaagccctc
     2581 accgccagcg ccgaacgcag cgccagccag tacgatcaca ccttcctgct ccatcaactt
     2641 gtctgcgaac accttgctcg gaatgtgcgc cggcagtgga atccacagat acatcgccgc
     2701 cttcggaacg tcgcacgtga agccgttctc gcggaatgcg gcgaccgccg cgtcgcgacg
     2761 ctccttgaat atcgccacgt ttcccggcac gaactcgtca tgtacgtcga gcgcagcggc
     2821 cgctgcagcc tgtatcgcga ggtacgatcc ggtatcgatg aacgacttga ccgtcaccag
     2881 tgcgtgcacc agctcctcgc gcccgcatgc ccagccgcaa cgccagccgg tcatgttgaa
     2941 cgtcttggac atcgaatgga attcgagcgc cacatccagc gcaccttcca cctcgaagat
     3001 gctcggcggc acgtagccat cataggccat ctcggagtac gcgttgtcgt acacgagcac
     3061 gatgtcgcgc tccttgcact gtttcacgac tcgcttgaga taatccatcg gcgcaatcgc
     3121 ggcagtcgga ttacccggat agttcagata aagaatcttc gtgcgagcga gcacgtcgtc
     3181 cgggacttcg tccagatcga cgagaaagtt gttgtcggcg cgcagctcgt atcgatacgg
     3241 ccgcccgttc gacagaatcg ttccgcccat gtacgcgttg tatccgggct ccggcatgat
     3301 cgcgtagtca tcgtcgttga ggtacgccag cgcaagatgc gcgagcccct ccttggatcc
     3361 gatgagcggc accacttcct tgagcggatc gaaggtgacg ccaaagcgct tcttcatgaa
     3421 gcggactatg gcttcgcggt attccatgag gcccatctcg aaaccgtacc gccccatcgc
     3481 gggctcgcgg atcgcgcgcg tcatgcgctc gagtgcggcc tcgggtggcg gaagtgttgc
     3541 gtcgccggcg ccgagatcga tgatgtccac accgcgcgcg atcagtgcgc gcttcctgtg
     3601 cggaatatcg gcgagcgggt acggtggaag ttttgtgata cgttcgctgt aaggaggcac
     3661 tcagacggtg ttggtgacag ggttgcgcac tttgctgaat ccagggatct cgacttcaac
     3721 cacatcgccg gcggcgagcc tgccgacacc cgctggggtg ccagttgcaa cgacgtcgcc
     3781 cggctcaagt gtcatgattc ccgatatgta ggatagcaaa tccggaatcg gaaataccat
     3841 gtcaccagcc gtaccgcgtt ggcgttctac accgttcacc cgggttagta ccaccaggct
     3901 tcggagatct tccggagcag ccgattccgg cccgatcgca cagaaagtgt cgaagccct
//
LOCUS       DATIMD010000527         3515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1080678, whole genome shotgun sequence.
ACCESSION   DATIMD010000527 DATIMD010000000
VERSION     DATIMD010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3515
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1080678"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1367)
                     /gene="dnaX"
                     /locus_tag="VLI40_11810"
     CDS             complement(<1..1367)
                     /gene="dnaX"
                     /locus_tag="VLI40_11810"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004046.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HSU97909.1"
                     /translation="MSNTLRGAIARDRVAHGYLFCGPRGTGKTTLARVLAMALNCENK
                     QPDGEPCGVCTSCQRIWSGSSSLDVVEIDAASNRGVDDARDLRERAMYAPSGDDRYKV
                     YIVDEAHMLTREAWNALLKVLEEPPARVVFVFATTEPQKIAQTAAPVLSRLQRFDLKR
                     IGRSDIVARLEYILDEEKIPREPEALMMISRAADGSMRDALSLTDQVTSLGEGSVTAE
                     AVRAALGLVPEDEYLDVLDIIVQRRAGDVFSAVRRLADEGVDFGIFLAGFSDVLRAQL
                     AVLLGGSVPDVSAAATERLRANSERLASGDVLRMLNVLSDLEPRFRKSGQQQLLIELL
                     LVRFALLDHTLSLEEVLRGIDPGSGSGSGTSGGTGGAQADWRAKIAAPEQATPVRTVP
                     AEAARFASREDSSRENSGRENSGREPARESAPAPTRRPAGGASPLSAMRSAMEASSQG
                     EPPQRL"
     gene            complement(1697..1936)
                     /locus_tag="VLI40_11815"
     CDS             complement(1697..1936)
                     /locus_tag="VLI40_11815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97910.1"
                     /translation="MRKVIFAAAVLVTVVTTACKKTGEGQYEVQKPVVGTVTDTVHTP
                     TVETGVDSTKVAVPKVEVKKDSATVKVPTVKVKKP"
     gene            complement(2092..2751)
                     /locus_tag="VLI40_11820"
     CDS             complement(2092..2751)
                     /locus_tag="VLI40_11820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97911.1"
                     /translation="MGTQIGVTHRELSAAREIEGGSTTEAIGGAAAVVLGILGLLGIL
                     PISLASVASIAVGAGLIAAGGTIASRYERVLAGAHVEPTTTRREIAGGLGMEAVAGAA
                     AIVLGILALLGKDSLTLLAVSAIAVGAGLLMASGSMSRLESLIRWELGRSSESRTSDM
                     IYASAGSEVIVGVGAIVLGILAIVGFDPITLVLVAILSIGASLLLSGSSVAGRFFTMF
                     H"
     gene            complement(2913..>3515)
                     /locus_tag="VLI40_11825"
     CDS             complement(2913..>3515)
                     /locus_tag="VLI40_11825"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HSU97912.1"
                     /translation="AERSDVRVLALPRGGVPVGYEVARALHAPLDVFLVRKLGLPGHE
                     EFAMGAIASDGVVVLDDDVVRTLGVDRRSIEYVIARERRELERREVAYRGDRPEIDIH
                     GCIVIVVDDGLATGSTMRAAVLALRSEKPKRIVVAVPVAAPETCRSFREGPDPADEVV
                     CLSTPEPFQAVGLWYEVFDQTSDDEVRALLNSAREYVATR"
BASE COUNT          651 a         1158 c         1076 g          630 t
ORIGIN      
        1 agtcgctgag gcggctcgcc ctgcgacgaa gcctccatcg cggagcgcat tgcggagagc
       61 ggactggcac cgccagccgg tctccgggta ggcgcgggcg ccgactcacg tgcaggctcg
      121 cgaccgctat tctcgcgacc gctattctcg cgactgctgt cctcgcgact cgcgaagcgc
      181 gccgcttcgg ctggcaccgt gcgaaccggt gttgcttgct ccggtgccgc gatcttcgcg
      241 cgccaatccg cttgtgcacc acccgtaccg cccgacgtac cactcccact cccacttccg
      301 ggatcgatcc cgcgcagaac ttcttcgagc gacaacgtgt gatccagaag tgcgaaacgc
      361 acaagcaaca gctcgatcag cagttgctgc tgaccactct tccgaaagcg cggctcgagg
      421 tcgctcagca cgttgagcat gcgaagcacg tcacccgatg caagccgctc tgaattggcg
      481 cgcagacgct cggtcgcggc tgccgaaacg tcgggaacgc tgccgccgag cagcacggcg
      541 agttgcgcgc gcaggacgtc ggagaatccg gcgaggaaga ttccgaagtc gacaccctcg
      601 tctgcgagac gccgcaccgc gctgaacaca tctcccgcgc ggcgctgaac gatgatgtcg
      661 agaacgtcga ggtattcgtc ttcgggcacc agtccgagcg cagcgcgaac cgcttccgct
      721 gtgacgctgc cttcgccgag cgacgtaacc tgatcggtga gcgagagggc atcgcgcatc
      781 gacccatcgg cggcgcgcga gatcatcatc aacgcctcgg gctcgcgcgg aatcttctcc
      841 tcgtccagaa tgtattcgag acgcgcgacg atatcgctcc gtccgatacg cttgagatcg
      901 aagcgctgca gacggctgag caccggcgcc gcggtctgcg caatcttctg cggctcggtc
      961 gtcgcgaaga caaagaccac gcgcgcgggc ggctcttcca gaaccttgag cagcgcattc
     1021 catgcttcac gcgtcagcat gtgcgcttcg tcgacgatgt agaccttgta gcgatcgtca
     1081 cccgacggcg cgtacatcgc gcgctcacgc agatcgcgtg cgtcgtccac gccgcggttg
     1141 gatgcggcgt ctatctcgac gacatccaga ctggacgagc cgctccagat gcgctggcaa
     1201 ctggtgcaca cgccgcaggg ctcgccgtcc ggctgcttgt tctcgcagtt gagcgccatt
     1261 gcgagcacgc gggcgagcgt ggtcttgccc gttccacgcg gaccacaaaa gagatatcca
     1321 tgcgcgacac gatcacgcgc gattgcgcct ctcagcgtgt tcgacacgtg gccttgaacg
     1381 gccacctcgg cgaacgagcg cgggcggtat ttccttgcta gcgcgagggc catgcgagtg
     1441 gtatgcgggg gcgacacccg cccttcggaa ggtccccgca aggcggggat gaaggggggc
     1501 ttccagggga tcggggcaac gcaaggcacc gcatgccgct gctaccttcg gggtcctgac
     1561 ggggttagtg ggctcgcgcc ccccggaaat ccctggaata tcccgaaata taaccgccgg
     1621 aatcgtcagc aggttgcgcg aacgggccgg cccgcgatgc gggccggcgt ctgcggctgg
     1681 agctcctcgg ccctgactaa ggcttcttca ccttgacggt ggggaccttg acggtcgcgg
     1741 aatccttctt cacctcgacc tttggaacgg cgactttcgt actgtccacg ccagtttcca
     1801 ccgtgggggt gtggactgta tcggtgacgg ttccgactac cggcttctgt acctcgtact
     1861 gcccttcgcc ggtcttcttg cacgcagttg tcacgacggt aaccagaaca gccgcagcaa
     1921 aaatcacctt tctcatcgaa gcctccgttc atgtgttggg gatcctggta cctggaatgg
     1981 caagaacggc gccgtcggga gcaggtgaac gtcaaggagg gcgagctcat gctgcggctc
     2041 gccctcctga aagactcgat tactcggtta caagtctctt cgaacgatcg ttcaatgaaa
     2101 catcgtaaag aagcggcccg cgaccgacga gccactgaga agcagtgacg cgccgatgct
     2161 gaggatggcg accaggacca gcgtaatggg atcgaagccg acgatcgcca gaatgccgag
     2221 cacgatcgcg ccgacgccga cgatcacctc tgagccagcc gacgcataga tcatgtcgct
     2281 ggtgcgcgac tccgagctgc gcccgagttc ccatcggatg agtgactcga gacgggacat
     2341 cgagccgctt gccatgagaa ggcctgcacc cacggctatc gccgaaactg cgagcagcgt
     2401 tagcgaatcc ttgccgagca gggcgagaat tccaagtact attgccgccg cgcctgcaac
     2461 ggcctccatg ccgagcccgc cggcgatctc ccgtcgggta gtcgtcggtt cgacatgggc
     2521 gccagccagg accctttcat accggctggc gatcgttccg cctgcggcga tgagaccggc
     2581 gccaaccgcg atcgacgcga ccgacgccag tgaaattggc agaatgccga gcaggccgag
     2641 gattccgagc acgaccgcgg cggctccgcc aatcgcttct gtagtggagc cgccctctat
     2701 ctctcgggcg gctgagagtt ctctgtgtgt gactcctatt tgagtgccca tcgttcttcc
     2761 cgcgtaatga tgatgcagcc gcacgttcgc gcggcgcatt ctactaaggt cggcaaacag
     2821 cgtaccgatc atgcatggga tgccatacta ttttcgcgtg aactcgtgac agtcgtcgtt
     2881 gcatcgctcg gggctcgacc caggcgtgca ggtcagcgag ttgcgacgta ctcccgggca
     2941 ctgttgagta gcgcacgtac ttcgtcgtcg ctcgtctggt cgaacacttc gtaccagagc
     3001 ccgacggcct gaaacggctc cggcgtggat agacacacga cttcatccgc tgggtcgggt
     3061 ccctcgcgga acgatctgca cgtctccggc gcggccacgg gaaccgcgac gacgatgcgc
     3121 ttcggttttt ctgatcgcag tgcgagcacg gccgcgcgca tcgtggaacc ggtcgccaga
     3181 ccatcatcca cgacgatcac gatgcagccg tgaatgtcga tctccggtct gtctcctcga
     3241 taggcaactt cgcgacgctc gagctcgcga cgctcgcgcg cgatgacgta ctcgatcgaa
     3301 cgcctatcca caccgagcgt gcgaaccacg tcgtcgtcca gcactacgac accgtcgctg
     3361 gcgatcgcgc ccatcgcgaa ctcctcgtgt cccggcagac cgagcttgcg caccagaaat
     3421 acatcgagtg gtgcatgcag cgcacgcgca acttcatatc ctacagggac accgccgcgc
     3481 gggagcgcaa gtacgcgaac gtccgatcgt tcagc
//
LOCUS       DATIMD010000528         3025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_504560, whole genome shotgun sequence.
ACCESSION   DATIMD010000528 DATIMD010000000
VERSION     DATIMD010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504560"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1212)
                     /locus_tag="VLI40_11830"
     CDS             complement(<1..1212)
                     /locus_tag="VLI40_11830"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HSU97913.1"
                     /translation="MPEDQLQIVESFRSRPWRTAAIVAATTVSFASAAAVRRHFLRQD
                     SMQSWAIRSSTIARLTGTRASNWLRPREADVNLLALSAGQSPELFGIPTPVHPVPPVD
                     TVVSKLTASMAMLNQLHSFNGIWLLDRQGKVVGSISSQPPPETARKAAMASLASDSAR
                     VAGPFPVGPHALTVAFVQRVIAAPKPGPGPLTGRIIGSVILTSDAAPLLTEAAAWSDR
                     TATEAASLIVQADDSIYEFALAPDRTRGAILGAWQRQLAPPSARAVTAANRDTTMEAA
                     AASGSRVDLAAHIDGLPWALRRREIPGVVFASVDSRLATEFSTVAAIIFMIAIITIAR
                     RQTSRERRHRETAESEVRYRLLADNATDIIVRHAPDGRIVYISPAVYSTLGYRPRQLE
                     GRHLSELSNDDD"
     gene            complement(1403..1990)
                     /locus_tag="VLI40_11835"
     CDS             complement(1403..1990)
                     /locus_tag="VLI40_11835"
                     /inference="COORDINATES: protein motif:HMM:NF019599.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcnI family protein"
                     /protein_id="HSU97914.1"
                     /translation="MNIQRRSLHLLILASALASLASLAPAVAFAHAVVYPKKSATGAY
                     ERYVLRVPNEKTVATTRVEIHFPDGVRITAFEDVPGWQLQILTDSAKRIVGAVWTGTL
                     APQRFVEFPFMAANPKATTQLIWPVYQTYAGNEVVDWTGAKGSKTPASVTSIAPVDST
                     GATASVVSGQWVQWIALIVALVSLGLVLRPKDRVS"
     gene            complement(1987..>3025)
                     /locus_tag="VLI40_11840"
     CDS             complement(1987..>3025)
                     /locus_tag="VLI40_11840"
                     /inference="COORDINATES: protein motif:HMM:NF017262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HSU97915.1"
                     /translation="PGSYRLVWRVVSADGHPVEGTILFWIGNSAAQPPPVSPAALNTP
                     STWGPTVVGAPIVPAVLRGLGLGFLMALAGLLFCLALPGSANDPAQRRPARIATRLSI
                     AAAILLALHLGAWIMNATPDHRLGSDATSALLASRIGKVELWRTGLAILALWALTIAR
                     RRRVALLFAIAALVVSGATGHSAAIDPIWTAPARALHLLAGGAWLGALIYLIAYDRDA
                     TDTFVRDALRVSTIALVAATVVVLSGALQALLFLSSPRDLFTSPYGAVLLAKIAGFLI
                     LIAFGAHHRYRVLPRLAHDATIAGRFGATIRSEVAVMAVVVLLGGFLAYVSPPHHAAV
                     HTSSHVHTVDQ"
BASE COUNT          643 a          902 c          956 g          524 t
ORIGIN      
        1 atcgtcatcg ttactcaact cgctcagatg ccgaccctcg agctgacgcg ggcggtagcc
       61 aagagtcgag tagacggcgg gcgaaatgta gacgatgcgc ccatcgggag cgtggcgaac
      121 gatgatatct gtcgcgttgt ccgccagaag ccgatatcgg acttcggatt ccgcagtttc
      181 ccggtgtctg cgctcacgag atgtctggcg ccgtgcgata gtgattattg cgatcatgaa
      241 aatgatcgct gccacggtgg agaactccgt ggcaagtctg gaatcaaccg atgcgaacac
      301 gacgcccgga atttcccggc gacgcagcgc ccacggcagt ccatcgatgt gtgccgcaag
      361 gtcgactcgc gatcccgagg ctgcggcagc ttccatggtc gtatcgcggt ttgccgcagt
      421 tacggcacgt gccgaaggcg gcgcaagctg cctttgccac gcaccgagaa ttgcaccacg
      481 ggtccgatca ggcgcgagtg cgaattcata tatcgaatcg tcagcctgga cgatgagaga
      541 agctgcttct gtcgcggtgc gatccgacca ggcagcggct tcggtcaaca acggcgctgc
      601 atcgctcgtg agtatgaccg agccgatgat acggccagtg agtgggccgg ggccgggttt
      661 cggtgccgcg atcacacgtt gcacaaacgc aaccgtgagt gcgtgcggac cgacggggaa
      721 tggtccggct acccgtgcgg aatccgaagc gagcgatgcc atcgccgcct ttcgcgccgt
      781 ctcggggggc ggttgggagg aaatggaccc gacaaccttt ccctgacggt cgagcagcca
      841 gatgccgttg aagctgtgga gctggttgag catggccata ctcgccgtca acttgctcac
      901 gacggtgtct actggcggta cggggtgaac cggcgtcgga ataccgaaca gctcaggact
      961 ctgaccagcg gagagcgcca gcagattcac gtcggcttcg cgcggccgaa gccagttgga
     1021 cgcgcgggtg ccagtgagac gagcgatcgt ggatgaccgg attgcccacg actgcatgga
     1081 atcctgacga agaaaatgcc gtcgcacagc agcagcggat gcgaaactga ccgtagttgc
     1141 ggcaacgatc gcagcagtcc gccatgggcg gctacgaaac gattccacga tctgcagctg
     1201 gtcctcaggc atggagcggt cctgggaaga taaaagtgct tggctcaggt aaggcagttg
     1261 aaagcgttta tgctacgacc ggatctcctt ctgaggtctc ggcgccttgc aaccagactt
     1321 gactatcacg cacctgatcg tcgctggcaa tcgtgtgcgg tccccttgaa acacaatcta
     1381 tccacccgag cccagcccgc tatcaggaca cccgatcctt cggccgcaga accaggccca
     1441 ggctcaccag cgccactatg agggcaatcc attggaccca ctggccggag actactgatg
     1501 cggtcgcgcc ggtcgagtcg accggagcaa tgctcgtgac tgaagcaggt gttttcgacc
     1561 ccttcgcacc cgtccagtcg acaacctcgt tgccagcgta cgtctggtaa acgggccaga
     1621 tcagctgggt tgttgccttg ggattcgcgg ccatgaacgg gaattccacg aatcgctgcg
     1681 gcgcaagcgt gcccgtccat accgcaccta caattcgttt tgcggaatcg gtgagaatct
     1741 ggagttgcca tcccgggaca tcctcgaacg cggtaattcg tacgccgtcc gggaagtgaa
     1801 tctcgacccg tgtcgtggct acggtcttct cattcggcac acgcagtacg taacgctcgt
     1861 aggcgccggt tgcggatttt ttcgggtaga cgacagcgtg cgcgaacgcg accgccggag
     1921 cgagcgacgc aagcgacgca agcgcactgg ccagtatcaa cagatgaagt gaacgacgct
     1981 gaatgttcat tggtcgacgg tgtgtacgtg tgaagaagta tggacagctg catgatgggg
     2041 cggtgacaca taggcaagga atccgccgag caggacgacc acggccatca ccgcgacctc
     2101 gctgcgtatc gtagcgccga aacgtccggc gatagtcgcg tcatgtgcca accgcggcaa
     2161 cacgcgatat cggtgatgag cgccgaacgc aatgaggatg aggaatcccg caatctttgc
     2221 gagcaacacc gcgccgtacg gtgatgtgaa caggtcccgc ggcgatgaca ggaacaacaa
     2281 tgcctgaaga gcgccggaaa gaacgacaac ggtcgcggca acgagtgcaa tggtcgagac
     2341 acgtagcgcg tcgcgcacga atgtgtcagt tgcgtcgcga tcatatgcga tgagatagat
     2401 cagcgctccc agccatgctc cgcccgccag aagatgcagc gctctcgcgg gcgcggtcca
     2461 gatcggatcg atcgcggcgg aatgcccggt cgctccgctc accaccagtg cagcaatcgc
     2521 gaacaacagc gcaactctcc gacgtctcgc gatcgtgagc gcccacagag caagtatcgc
     2581 aagcccggtg cgccagagct cgaccttccc gattctgctc gcgagcagcg ccgaggtggc
     2641 atcgctccca agccggtgat ccggtgtggc attcatgatc cacgcgccga ggtgcagtgc
     2701 gagcaggatc gccgccgcga tcgagaggcg cgtcgcaatt cgcgcaggcc tgcgctgcgc
     2761 ggggtcattc gcagagcctg gcaatgccaa acagaacaac aagccggcca gtgccatgag
     2821 aaatccgagt ccgagcccac gcagcacggc gggtacgatc ggagcaccga ctacggtcgg
     2881 tccccatgtc gacggcgtgt tgagagctgc aggcgaaacc ggcggtggtt gcgcagcgga
     2941 attgccaatc cagaagagga tggtaccttc gaccgggtgt ccgtcagctg aaacgacgcg
     3001 ccagaccagc cggtacgatc ccggg
//
LOCUS       DATIMD010000529         3695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4840250, whole genome shotgun sequence.
ACCESSION   DATIMD010000529 DATIMD010000000
VERSION     DATIMD010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4840250"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            80..1150
                     /gene="thiO"
                     /locus_tag="VLI40_11845"
     CDS             80..1150
                     /gene="thiO"
                     /locus_tag="VLI40_11845"
                     /EC_number="1.4.3.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR02352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016647 - oxidoreductase activity, acting
                     on the CH-NH group of donors, oxygen as acceptor [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine oxidase ThiO"
                     /protein_id="HSU97916.1"
                     /translation="MVADVTVVGTGIIALSTALELADRGLAVRLVGTTHSGNASAAAG
                     GMLAPSIDSETGSAHDFAIASRDYYPGYVAALTERTGRQIPMNDAGTFELAFDELEAD
                     SLRHSNDRSARWIPQEELAALTPGIAPCLGGLLHPADGAVEPLALLDALSIAVAAHEH
                     VTAAREDCRELHASELGCNVLTDMESRFASDRVVLAAGAWTPLIAGSGQCVASVQPVR
                     GQMIAFESDAVRHVICGAGGYLIPRSGGIIVAGGTMEHAGFEVETTLDGVESIRSRAI
                     ALCPALVNAPIHSSWAGLRPVTPDLLPIIGADPERPRVIYACGHSRNGILLAPLTAQV
                     VADLVTGATPRYDLSRFRPGRH"
     gene            1192..2079
                     /gene="lipA"
                     /locus_tag="VLI40_11850"
     CDS             1192..2079
                     /gene="lipA"
                     /locus_tag="VLI40_11850"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010331747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HSU97917.1"
                     /translation="MGRHRAEPLPERKPSWLKVRAPGGPNYLRLTQMMRELNLHTVCE
                     EAHCPNIGECWEHGTATFMILGDVCTRNCAYCAVAHGRPPSYDIAEPERVGEAVAELR
                     LRHAVITSVDRDDLPDFGAYIFAETIRQIKQRLPDCSVEVLVPDFQGNRDSIATVLAA
                     NPDIYNHNTETVPRLYKKCRPGGRYPRVMEIFRTAKELAPDIPTKTGLILGMGETLEE
                     VELVMRDLREVDVDILTLGQYLRPSDSHIPLDRYVTPAEFRELYEIGMSMGFRHVESG
                     PLVRSSYHAWEQVQAAGVN"
     gene            2202..3251
                     /gene="pdhA"
                     /locus_tag="VLI40_11855"
     CDS             2202..3251
                     /gene="pdhA"
                     /locus_tag="VLI40_11855"
                     /inference="COORDINATES: protein motif:HMM:TIGR03182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HSU97918.1"
                     /translation="MAKKNTSSPAPANARETAVGYLHSMIMQRRFEEKCAEAYAIGKI
                     GGFCHLYIGQEAVSTGTMAALRPDDYVITAYRDHGLALARGMTPNEIMAELFGRAAGC
                     SGGKGGSMHLFDKKLNFLGGHGIVGGHIPIAAGVSFAISYRGGDQVCVCFFGEAAVNI
                     GAFHEALNMASLWNLPVVFIIENNRYGMGTAISRSTAQQDVVKRAESYAMIGTSVDGQ
                     DVFAVRKEMDTAIERARTEHRPTLVEVRTTRFMGHSMSDAASGTYRSKEELDQSMQRD
                     PIVLLKTKMLSDGMITEDDYKKMDDEAKAAAQAAWDFADASPEPSPEELFTHVLSDES
                     TVGAANDAELAGVGR"
     gene            3257..>3695
                     /locus_tag="VLI40_11860"
     CDS             3257..>3695
                     /locus_tag="VLI40_11860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HSU97919.1"
                     /translation="MTYRDALNQALREELKRDESVFLMGEEVAEYNGAYKVSRGLLDE
                     FGPKRIVDTPITELGFAGVGVGAAMAGLRPIIEFMTWNFALLALDQVVNAAAKMLYMS
                     NGQYKMPMVFRGPNGAALQLSAQHSQAWESWLAHIPGLKVVAPG"
BASE COUNT          736 a         1116 c         1147 g          696 t
ORIGIN      
        1 agaatagtac ggagcatgcg agctccgacc gaattccctg ttgaattcct acgcccattt
       61 gacaccgtcc ggccaccaaa tggttgctga cgtaacggta gtcggtacag gaataatagc
      121 gctctctaca gcgctcgagc tcgccgaccg cggcctggcc gtgcgcctgg ttggaaccac
      181 gcactcggga aatgcatcgg ctgccgcggg tggaatgctg gcaccatcga tcgacagtga
      241 aaccggatcc gcgcacgact tcgcgatcgc gtcgcgggat tactatcccg gctatgttgc
      301 cgcgctgacg gagcgtaccg gccgacagat cccgatgaat gacgcgggga ctttcgaact
      361 agcgttcgat gagctcgaag cggattcact acggcattcg aacgaccgtt cggcgcgctg
      421 gatcccgcag gaagagctgg cggctctgac gccgggcatc gcaccatgcc ttggcggcct
      481 gctccacccg gcggatggcg cggtcgagcc gctggcgctg ctggatgcac tcagcattgc
      541 ggtagcggcg cacgaacacg tcaccgctgc gcgcgaggat tgtcgagagc tgcatgcgtc
      601 ggagctcgga tgcaatgtgc tgaccgacat ggagagccga ttcgcgtcgg accgggtcgt
      661 ccttgcggcg ggtgcatgga ctcctcttat cgccggttcc ggacaatgcg tcgcatccgt
      721 gcaaccggtc cgcgggcaga tgatcgcatt cgagagcgat gcggtgcgcc acgtgatctg
      781 cggagccggt ggttatctca ttccgagaag cgggggaatc atcgtcgctg gcggaacgat
      841 ggagcatgcg ggcttcgagg tggaaaccac gctcgacgga gtcgagtcga tccgctcacg
      901 cgcgattgcg ctttgccccg cgctcgtgaa tgcgccaatt cactccagct gggcggggct
      961 gcggccggtt acaccggacc tgctaccgat catcggcgcc gatccggaga gaccgcgtgt
     1021 catctacgcg tgtggtcatt cacgcaatgg aattctgctt gccccgctca ccgcacaggt
     1081 cgtcgccgat cttgtgacgg gcgccacgcc acgctacgac ctgagtcgat ttcggcccgg
     1141 gcggcattag gctagatttg acactctatg gctgaactgc tgtaccagat catggggcgc
     1201 catagggctg aaccccttcc tgagcgaaag ccttcctggc tcaaggtcag ggcgcccggc
     1261 ggtcccaact atctgcgcct gacgcagatg atgcgtgagc tgaacctgca cacggtgtgt
     1321 gaggaggctc attgccccaa tatcggcgaa tgctgggagc atggcaccgc gaccttcatg
     1381 atcctgggcg acgtgtgcac ccgtaattgc gcttactgcg ccgtcgcgca cggccgccca
     1441 ccgtcatacg acatcgcgga gccagagcgc gttggcgagg ccgtggcgga gctcaggctg
     1501 cgacacgcgg tgatcacttc ggtggatcgc gacgacctgc ccgattttgg cgcctacatt
     1561 ttcgctgaga ccattcggca gatcaagcag cggctccccg actgctcggt cgaggttctg
     1621 gttcccgact ttcagggtaa ccgcgacagc attgcgacgg tccttgcggc caaccccgac
     1681 atctataacc acaacaccga gacggtgcct cggctttaca agaagtgccg gcccggcggc
     1741 cgttatccac gcgtgatgga gattttccgc accgccaagg agctcgcacc cgacattccc
     1801 accaaaaccg ggctcattct cggaatgggc gagacgctgg aagaggtcga gctcgtaatg
     1861 cgtgacctgc gcgaggtgga cgtcgacatt ctcaccctgg gccagtacct gcgtccgtcc
     1921 gacagccaca tcccgctgga tcgttacgtc acaccggcgg aattccggga gctgtatgaa
     1981 atcggcatgt cgatgggctt cagacatgtc gaatcaggtc cgcttgtgcg cagcagctac
     2041 catgcctggg aacaggttca ggcagctgga gtcaactgag ctgcgatcac acccgctccg
     2101 cgcttcacat tcacaatcac gcgcggcacg acaactgaga agctccccga tccaatacac
     2161 tgcgatcaca gcttccagta tcacctgcac gtataaatgt catggctaag aaaaacacat
     2221 cttctccggc acccgcgaac gctcgcgaga ccgccgtcgg ctacctgcac tcgatgatca
     2281 tgcagcgccg cttcgaggaa aaatgcgccg aagcctacgc gatcggtaag atcggcggct
     2341 tctgtcacct ttacatcggc caggaagcag tttccacagg cacgatggcc gcactccggc
     2401 cggatgatta cgtgatcacg gcataccgtg atcacggact cgcgctggct cgcggaatga
     2461 cgccaaacga aatcatggcg gagctgttcg gccgcgctgc gggatgctcg ggcggcaagg
     2521 gcggctcgat gcacctcttc gataaaaagc tgaatttcct tggcggccat ggcattgtcg
     2581 gcggccacat tcccatagca gctggcgtat cgttcgcgat ctcgtatcgc ggcggcgatc
     2641 aggtttgcgt ctgcttcttt ggtgaagctg cggtcaacat cggcgcgttt cacgaagcgt
     2701 tgaacatggc gtcgctgtgg aacctgccgg tcgtgttcat catcgagaac aaccgttacg
     2761 gcatgggaac tgccatcagc cgctccacag cgcagcagga tgtggtcaag cgcgccgaat
     2821 catacgcgat gatcggaacg tcggtcgacg gtcaggatgt attcgcagtg cgcaaggaga
     2881 tggacacggc gatcgagcgt gcacgcacgg agcatcgtcc cacactggtg gaagtgcgca
     2941 ccacgcgctt catgggtcac tcgatgtccg acgctgcgag cggaacctac cggtccaagg
     3001 aagagctgga tcagagcatg cagcgcgatc cgatcgtgtt gctcaagaca aagatgctga
     3061 gtgacggaat gatcactgag gacgactaca agaagatgga tgacgaggcc aaggcggccg
     3121 cgcaggctgc gtgggacttc gccgatgcat caccggagcc gtctcctgaa gaactgttca
     3181 cgcatgttct gagcgacgaa tcgacggttg gcgctgcgaa cgacgccgag ctcgcggggg
     3241 tcggacgatg accgtcatga catatcgcga cgcactcaat caggcgttgc gcgaagagct
     3301 gaagcgcgac gagtcggtgt tcctgatggg tgaggaagtc gcggaataca acggcgccta
     3361 taaagtgtcg cgtggattgc tggacgaatt cggtcccaag cggatcgtcg acacaccgat
     3421 caccgagctc ggcttcgctg gtgtcggtgt cggggcggcg atggctggtc tcagaccgat
     3481 catcgagttc atgacgtgga actttgcgct tctcgcgctc gaccaggtcg tgaacgccgc
     3541 cgccaagatg ctgtacatgt ccaacggtca gtacaagatg ccgatggtct tccgcggacc
     3601 gaatggtgca gcgctgcaac tatcggcgca gcactcgcag gcgtgggaga gctggctcgc
     3661 tcacatcccc ggtctcaagg tcgtcgcacc aggaa
//
LOCUS       DATIMD010000530         4320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3684608, whole genome shotgun sequence.
ACCESSION   DATIMD010000530 DATIMD010000000
VERSION     DATIMD010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4320
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3684608"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VLI40_11865"
     CDS             <1..300
                     /locus_tag="VLI40_11865"
                     /inference="COORDINATES: protein motif:HMM:NF024152.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusD/RagB family nutrient-binding outer membrane
                     lipoprotein"
                     /protein_id="HSU97920.1"
                     /translation="GVAYQGGTAGLKQIATQKYIALFGDDGQAWAEWRRTCTPTIVPG
                     PSTIVPYIPRRYYYSTTEASVNATNLNAAIARQGPDNFGTRVYWDTKPTAAPTCQ"
     gene            569..2251
                     /locus_tag="VLI40_11870"
     CDS             569..2251
                     /locus_tag="VLI40_11870"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HSU97921.1"
                     /translation="MTVKLAYVGMLALATACSTACSKARSSGSGARSTQHTSYADLVA
                     FFHDWRAFEQPRIVDGVPDYSVAAMNAQHAALAGYQRRLAAMDTTGWTTPQQVDYNIV
                     RAEMNGLDFSHRVLRPWARNPSFYVYYFPSRSDQPAREGTVVSGAIEMWMYKFPLSRA
                     TADSLAERLRTIPKLLKAARVNLDGNAKDLWNYSIADVRGQSRALAALSARVAATNPA
                     VDSAALQARIATDEFAAWLEQQAPSKTGPSGVGVDNYNWYLKNVQLVPYTWEQEEVLM
                     RRELARSRASLKLEEDRNRKLPPMIPISDSATYVNRFNAAVTEYMTFLRDRDILTVQG
                     YMDPALRARMGRFHSADRPREFFDEVAYRDPMIMLTHDFHWFDLARMAAQPHPDPIRR
                     DALLYNTFVTRTEGFATAFEEMMMREGFVDTHPRSKELIYILVAERAARALGDLHLQS
                     NEFTMDQAKKFASERTPRGWLRVDGETVTGEQHLYLQQPAYGTSYIMGKIQFDELLDE
                     RAAQLGDAYSTKRFMDEFTDAGLIPMSLIRWELTGNADQIRAMTRPDSTQPR"
     gene            2304..3794
                     /locus_tag="VLI40_11875"
     CDS             2304..3794
                     /locus_tag="VLI40_11875"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HSU97922.1"
                     /translation="MKSGTLQLDHVGIRCRNAVAVALALLCMAPSAQAQPVVGRIFPA
                     SEFAARRAAVMKSIGDGVAIVQGTTERPGEQPLRQNNEFYYLTGVIEPRAILMMDGRT
                     GRSTLFLTPTNDRRELSMFGPSLIPGDSAEKDSGIESVVARDRFGPALVAAGTAGRQV
                     FTPFRAEVLGSASAADPVTLARATRADPWDGRDSREDAFQQKMKAAAPSIEIKDLDPI
                     IDSLRAIKSPHEIEVIHEATRIAGLGIMEAMRDAKPGMHEYELQADAEYVFKKHGAYG
                     PAYFALIATGKNTYYTHYHRNTAVLKGGDLVQFDYAPDYDYYTSDVTRIFPANGKFTA
                     RQKEMYNIYLRLYQALMTSIRPYQTPDQIAKNAVVKMEKIVATYPFTEPKIKAAANSF
                     IDLYRLKPVRSLGHTVGMSVHDVPYAAATLQPGEIFTIEPEMRIPDEHLGFRLEDMLL
                     ITKDGYVNLSAFVPVEVGDIERLMSQRGLSDFELKMSGDKVNTGSP"
     gene            3858..>4320
                     /locus_tag="VLI40_11880"
     CDS             3858..>4320
                     /locus_tag="VLI40_11880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97923.1"
                     /translation="MTRNSRSFTILSNLLVSAAVVAAAVMGMTAYRDNNAESSNQRPA
                     VRGHAVVHFAVAHDVSGMLAVDPNVHPGDSDMSGFDVPANAVAPDPDYESRATDTVAH
                     AQIVVPPGAARVEQSATRSARSRRRAFCGRTRCFRHARRRSEHASWRVGYER"
BASE COUNT          928 a         1303 c         1301 g          788 t
ORIGIN      
        1 ggtgtcgcct atcagggcgg taccgcgggc ctcaaacaga tcgcaacgca gaaatacatc
       61 gcgctctttg gcgatgacgg ccaggcatgg gcggagtggc ggcgcacgtg tacgccaacg
      121 atcgttccag ggccaagcac gatcgttccg tacattccgc gtcgttacta ctattccacc
      181 accgaggcgt cggtcaacgc gacgaatctg aacgctgcga tcgcacgcca gggtccggac
      241 aacttcggca cgcgtgtgta ctgggacacc aagcccacag cggcaccaac ctgccagtag
      301 gcggctgtgg cgaccgtata acctcgagat ccgtacatga agcagccggc gcggcagttg
      361 ccgcgccggc tgcttcatac gtagggcttc cgcgtcatcg ccgggctgcg gtccgactgg
      421 cgcaacgctc tcttacccgt cgccgtattt aaccgtattg tatactgtat acgagaattg
      481 ataagacgca acatgcgagg cgacatgcga ggcgacatgc gcgcatgtgt ctcgagagcc
      541 ggggaacgcg gattcaaccc aaagcccgat gactgtgaaa ctggcatacg tgggaatgtt
      601 ggcgctcgcg acagcttgct cgacagcttg ctcaaaggct cgctcgagcg ggagtggggc
      661 acgctccacg caacacacca gctacgcgga tctcgtagcg tttttccacg attggcgcgc
      721 gttcgagcag ccaaggatcg tggatggcgt gccggattat tccgtggctg cgatgaatgc
      781 gcagcacgct gcgcttgccg gttaccagcg ccgtctcgcc gcgatggaca ccactggctg
      841 gaccactccg cagcaggtgg actacaacat cgtgcgcgcg gagatgaacg ggctggattt
      901 cagtcaccgc gtgctgcggc cctgggctag aaacccatcc ttttacgtct attacttccc
      961 gtcacgaagc gatcagcccg cgcgcgaagg cacggtagta tcaggcgcga tcgagatgtg
     1021 gatgtacaaa ttcccgctgt cgcgagcgac cgcggacagt ctcgcagagc gtctgcgaac
     1081 gattccgaag cttctgaaag ctgcccgagt caacctcgac ggcaacgcaa aggatctgtg
     1141 gaattacagc atagctgacg tgagagggca gagtcgcgcg ctcgcggcgt tgtctgcacg
     1201 cgtcgcggcg accaaccccg cggtcgactc tgcagcacta caggctcgca ttgcgacgga
     1261 tgagttcgcc gcatggctgg aacagcaggc gccctcgaag accggtccat ccggagtcgg
     1321 tgtcgacaat tacaactggt atctgaagaa cgttcagctc gtgccgtaca cctgggagca
     1381 ggaagaggta ctgatgcgca gagagcttgc gcgctcgcgc gcctcgctca agcttgaaga
     1441 ggacaggaac cgcaagcttc cgcccatgat tccaatctcg gactcggcga cttacgtcaa
     1501 tcgtttcaat gccgccgtaa cggaatacat gacttttctg cgcgaccgcg acatcctcac
     1561 ggtgcaaggt tacatggatc ccgccttgcg tgcgaggatg ggtcgtttcc attcggcaga
     1621 caggccgcgt gagtttttcg acgaagtggc atatcgcgat ccgatgatca tgctcacgca
     1681 cgactttcac tggttcgacc tcgccagaat ggcggcgcag cctcatcccg atcccatcag
     1741 acgcgatgcg ttgctctaca acaccttcgt cacgcgcacc gaagggtttg cgacagcgtt
     1801 cgaagagatg atgatgcggg aagggttcgt cgatacgcat ccacgatcaa aggagctcat
     1861 ctacatactc gttgcggagc gcgccgcacg tgcgctgggc gatctgcatc tgcagagcaa
     1921 cgaattcacc atggatcagg cgaagaagtt cgcgtccgaa cggacaccac gcggctggct
     1981 gcgcgtggac ggtgaaacgg ttaccggcga acagcacctg tacttgcagc aacccgctta
     2041 cgggaccagc tacatcatgg gaaagatcca gttcgacgag ctgctcgacg aacgcgccgc
     2101 acaactcggc gatgcgtact cgacgaagcg gttcatggat gagttcaccg acgctggatt
     2161 gattcccatg tcgctcatcc gctgggaact gaccgggaat gcggatcaga tcagggccat
     2221 gacacgcccc gactcgacac agccgcgttg atgcaggaag tcggcacagc aacacaatgt
     2281 ctcaataccg aagcgaggta gtcatgaaat ctggtacgct ccaactcgat catgtgggaa
     2341 tcaggtgccg taatgctgtg gccgtggcac tcgcgctgct ctgcatggcg ccgagcgcac
     2401 aggcgcagcc ggtagttggc cggattttcc ccgcgagcga gttcgccgcg cgccgggcag
     2461 ccgtaatgaa gtcgatcggt gatggcgtcg cgatcgtgca gggcaccacg gaacgccctg
     2521 gcgaacagcc gctgcgtcag aacaacgaat tctattacct gactggcgtc atcgagcctc
     2581 gcgctatcct gatgatggat ggacgcaccg gccggtcgac gctcttcctg accccgacca
     2641 acgaccggcg tgagctatcc atgttcgggc catcgctgat accgggtgat tccgcagaga
     2701 aggacagcgg catcgaatcc gtggttgcgc gagacaggtt cggaccggca ctcgttgcag
     2761 ctggaactgc ggggcgacag gtattcacgc cgttccgtgc ggaggtcctt ggaagcgcat
     2821 cggctgccga tccggttacg ctcgctcgcg caaccagggc tgacccatgg gacggccggg
     2881 actcgcgcga ggacgcattc cagcagaaga tgaaggcagc cgctccgtcg atcgagatca
     2941 aggacctcga tccgatcatc gactcgttgc gcgcgatcaa gagtccgcac gagatcgaag
     3001 tgattcacga agcgactcga atcgcggggc ttggcatcat ggaagcgatg cgggacgcga
     3061 agcccgggat gcacgagtac gagctacagg ccgacgccga gtacgtcttc aagaaacacg
     3121 gcgcgtacgg acctgcatac ttcgcactca ttgcaaccgg caagaacacc tactacacgc
     3181 attaccaccg gaacactgcc gtcctcaagg gcggcgatct cgtccagttc gactatgcgc
     3241 cggattacga ctactacacg tccgatgtca cgcgcatctt tcccgcgaac ggaaaattca
     3301 ccgcgaggca gaaggagatg tacaatatct acctccgact gtatcaggcg ttgatgacgt
     3361 cgatccggcc ttaccagacc ccggatcaga tcgcgaagaa cgcggttgtg aagatggaga
     3421 agatcgtcgc gacctatccg ttcacggaac cgaagatcaa ggcagccgcc aattcgttca
     3481 tcgatctgta tcggctcaag ccggtgcgga gtctgggcca cacggtgggc atgtcggtgc
     3541 acgacgtgcc atacgccgcc gcgacactac aaccgggcga gatcttcacg atcgagccgg
     3601 agatgcggat tcccgacgag cacctcggct ttcggctcga ggacatgctg ttgatcacga
     3661 aggatgggta cgtcaacctg tcggcgttcg tcccggtcga agtcggcgac atcgagcgac
     3721 tcatgtcgca gcgcggtctc agcgacttcg agctgaaaat gtccggcgac aaggtgaaca
     3781 cggggtcgcc gtgacatgac agacactatt gaaaaaggac acgccgtgca gctctcactt
     3841 caatcaccgg acacaccgtg actcgcaact cacgcagctt cacaatactg agcaacctgc
     3901 tcgtcagcgc agcggttgtg gccgccgcag tgatgggaat gacagcctat cgcgacaaca
     3961 atgccgagtc gagtaatcag cgacccgcag tgcgcggcca tgccgtcgtg catttcgcgg
     4021 tcgcacacga tgtttccggc atgctcgccg tagatccgaa cgtgcatcct ggcgactcgg
     4081 atatgagcgg attcgacgta cccgcgaacg cggtcgctcc ggatccggat tacgagagca
     4141 gagcgaccga tactgtcgca catgcgcaga tcgtcgtacc gccgggcgcg gcgcgagtcg
     4201 agcaatcagc gacccgtagt gcgcggtcac gccgtcgtgc attttgcggt cgcacacgat
     4261 gtttccggca tgctcgccgt agatccgaac atgcatcctg gcgagtcgga tatgagcggt
//
LOCUS       DATIMD010000531         2397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_217802, whole genome shotgun sequence.
ACCESSION   DATIMD010000531 DATIMD010000000
VERSION     DATIMD010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2397
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217802"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..883
                     /locus_tag="VLI40_11885"
     CDS             <1..883
                     /locus_tag="VLI40_11885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSU97924.1"
                     /translation="QTSPNFFLNPQNGVSYKVAVQTPEYRLSSLSDLESTPVIAAGVA
                     PQLFGNLATESRRTGVAVVDHYNVQRVYDVYAGAEGRDLGSVARDIDHVVAQIQKKMP
                     IGTTIVMRGQVSSMRDAFTGLGFGLAFAILLVYFLMVVNFQSWLDPFIIIMALPAALV
                     GIVWMLFVTRTTFSVPSLMGAVMAMGVATANSILVVTFANSRRADGLDAVEAALDAGK
                     TRLRPVLMTALAMIIGMLPMALGFGEGGEQNAPLGRAVIGGLIIATVATLVLVPVVYS
                     VLRTRPPGGVDDPLLHS"
     gene            964..2073
                     /locus_tag="VLI40_11890"
     CDS             964..2073
                     /locus_tag="VLI40_11890"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSU97925.1"
                     /translation="MIIAILLAIGIIPRITQRRALADEVRAVADTAMPTSVSTAVRAK
                     SAPLVLPGTLQPLHEAVVYARSAGYERRWYADIGARVSDGQVLATIEAPEVDQEVQQA
                     QAQLTQANASLALAKSDLDRWKSLARDSAVSQQELDEKTAAYEASAATANAQRANVQR
                     LTSVQGFSKVAAPFAGVVTARNVDVGTLVSPGTSGAGTGGLGLFRVSQTDTMRVYVNV
                     PQSLAPSIHVGQNANISLAEQHGRVFTGKVARTAAALDPGTRTLLVEVDVANTDNSLL
                     AGSFVQVDLATGGMIAPIVVPANALLFNAGGTQVVVIDDHNVAHYHKVSVGRDYGATV
                     EILSGVDEGATVALNPSDDIRDGHAIKPIKLPAAS"
     gene            2282..>2397
                     /locus_tag="VLI40_11895"
     CDS             2282..>2397
                     /locus_tag="VLI40_11895"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HSU97926.1"
                     /translation="MRDTRGFTLVELLVVILIVGILASIAIPKYATVKERAYL"
BASE COUNT          447 a          739 c          758 g          453 t
ORIGIN      
        1 gcagacatcg ccgaatttct tcctcaatcc gcagaacggt gtgtcataca aggttgcggt
       61 gcagacgccg gagtatcgtc tgtcgtcgct cagcgacctg gagtcgacgc cggtgattgc
      121 cgcgggtgtg gcaccgcagc tgttcgggaa tctcgccact gaatcgcggc gcacgggcgt
      181 cgcagtggtg gaccattaca acgtgcaacg cgtgtacgac gtctacgcgg gcgcggaagg
      241 ccgcgacctc ggtagcgtcg cacgcgacat cgatcatgtc gtcgcgcaga tacagaagaa
      301 gatgcccatc ggcacgacta tcgtgatgcg gggccaggtg tcgagtatgc gcgacgcgtt
      361 cactggattg ggcttcggtc tggcgttcgc gattctgctg gtgtatttcc tgatggtcgt
      421 gaattttcag tcatggctgg atccgttcat catcatcatg gcgcttcctg ccgcgctggt
      481 cgggatcgta tggatgctct tcgtcacgcg cacgacgttc agcgtgccgt cgctcatggg
      541 tgcagtgatg gcgatgggcg ttgcgacggc gaacagtatc ctggtcgtca cctttgcaaa
      601 ctcgcgccgc gcggacgggc tcgatgcggt tgaggcagct ctcgatgcag gcaagacacg
      661 tctgcgtccc gtactcatga ccgcactcgc gatgataatc ggcatgctgc cgatggcgct
      721 cggcttcggc gagggcggcg agcagaatgc accactcggc agggcggtga tcggcggatt
      781 gatcatcgcc acagttgcga ctctcgtgct cgttcccgtt gtctatagcg ttctgcgcac
      841 ccggccgccg ggtggcgtgg acgacccact gttgcactca tgatgcaagc atcctctcct
      901 tcccccgctt ccccttctcc cgccccgcgg cgccgctcgc gcgcgacgtt gccggttttt
      961 gcagtgatca tagcgatcct gctggcgatc ggaatcattc ctcgcatcac tcagcgacgc
     1021 gcgctggccg atgaagttcg cgcggttgcc gatacggcga tgcccacatc ggtgtccacg
     1081 gccgtgcgcg cgaagagcgc gccgctcgta ctgcccggaa cgcttcaacc actccatgag
     1141 gcagtcgtgt acgcacgctc cgccggttac gagaggcgct ggtacgccga catcggcgcg
     1201 agggtcagcg acggccaggt gctcgcgacc atcgaagcgc ccgaagtcga ccaggaagtc
     1261 cagcaggcgc aggcacagct cactcaggca aacgcgtcgc tcgcgcttgc gaagagcgac
     1321 ctggacagat ggaagtcgct cgcgcgcgac agtgcagtga gtcagcagga gctggatgag
     1381 aagacggctg cctacgaggc gagcgcggcc acggccaatg cgcagcgcgc gaacgtgcag
     1441 cgcctcacga gcgtgcaggg attcagcaag gtcgccgcac cgttcgctgg cgtggttacc
     1501 gcgcgcaacg tcgatgtcgg aactctcgtg agccctggaa ccagcggtgc cggcaccggc
     1561 ggactcggac tcttccgcgt atcacagacc gatacgatgc gcgtctacgt gaacgtgccg
     1621 cagtcactgg cgccttcaat tcatgttggc cagaatgcca acatatcact ggctgaacaa
     1681 catggccgcg tcttcacggg caaggttgca cgtaccgccg cggcgctcga tcccggcacc
     1741 cgcacacttc tcgtggaagt ggatgtcgcg aacactgaca actccctgct cgccggaagc
     1801 ttcgtacagg tagatcttgc caccggtggg atgatcgcac cgatcgtcgt cccggcgaat
     1861 gcgcttctgt tcaacgcagg cggcacgcag gtagtcgtga tagatgacca caacgtcgcg
     1921 cactatcaca aggtctccgt cggacgtgac tacggtgcta cagtggagat cctgtcggga
     1981 gtggatgagg gcgcgacagt cgcgctcaac ccatccgacg acatccgcga cggtcacgcg
     2041 atcaagccga tcaagctgcc tgcggccagc tgacgaggac gggccggaac agccgcgaaa
     2101 cgcaatgatg gttgcggatt acaacgaacg ccctacgttt atgcggagcc gggtaaaggc
     2161 gtaaatcgtt acgccgcaag actttaagat ttgcggcgcg acgtggcgca gcggttgcga
     2221 agtccgacgg ttgccgtcag tccggcggcg ctgaatacct gtcaacgcga gggcgatccc
     2281 aatgcgagat acgagaggct ttaccctcgt cgaactgctg gtcgtgattc tgatcgtcgg
     2341 aatcctggcc tccatcgcaa ttccgaaata cgcgaccgtc aaggagcgag cttacct
//
LOCUS       DATIMD010000532         2806 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1957412, whole genome shotgun sequence.
ACCESSION   DATIMD010000532 DATIMD010000000
VERSION     DATIMD010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2806
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1957412"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(195..869)
                     /locus_tag="VLI40_11900"
     CDS             complement(195..869)
                     /locus_tag="VLI40_11900"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HSU97927.1"
                     /translation="MKNRVTSLVAAAVAVTLAGAGIGHAQTITPTGTFGSLPAGSFGG
                     SGIPTDAVMTGGANGAVIGLSATQRYTSPAVKNNGAGTYYAAPGMSTGGATNAGFASW
                     NFDYFIGNANPTDVFTLYVDHDPATGASLSNTFGLTLTNSLGYADSSNLGYWTFLGPF
                     NPDANGEYSFAIYQRSATGQELSHVAMNVDVGTVATTPEPSSFALLGSGFIGLAGFIK
                     RRAKLV"
     gene            1279..2103
                     /locus_tag="VLI40_11905"
     CDS             1279..2103
                     /locus_tag="VLI40_11905"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSU97928.1"
                     /translation="MRYGEAGRPVLVLLHGGPGADHRYLLPQMLHLAEKYDLLLYDQR
                     GGGQSRASDNKPIGWRDHVADLAAVCRECDIAMPSILGYSWGGMLTLLYAITQSQDAS
                     LPKPARLVLMSPAPVTTEYRAEFDANLRARGNAPVIADERAILMASDLRERDPDAYRQ
                     RIFELGVAGYFFDPANARNLTPFRVVGRVQQSTWESLGQFDLRPDIARLQIAARVVQG
                     RDDPIPAASSIDVAHALKTEPVFLDRCGHVPYVERPQELWEAIDPFLASTDAAASR"
     gene            2104..2559
                     /locus_tag="VLI40_11910"
     CDS             2104..2559
                     /locus_tag="VLI40_11910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97929.1"
                     /translation="MTDFRAEHHLATIDADGALCDVMVRFSYDGLEHIGRLWFSGPAV
                     GDKPLPDHGGIPGRTIEEAIQLSERFTTDDLLRRFYRARAEKRKYLQLRRATEQMLDK
                     VKYMNRIALSMKGGMLDADGARQELDLIVKQMHELVDTMPAMAGVEETH"
     gene            2591..>2806
                     /locus_tag="VLI40_11915"
     CDS             2591..>2806
                     /locus_tag="VLI40_11915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97930.1"
                     /translation="MTLQPASARAPLIFKRLRRAYPDAHCELDHTNAYQLLVATILSA
                     QCTDKRVNLVTPALFQRYPDAEALAMAD"
BASE COUNT          539 a          839 c          848 g          580 t
ORIGIN      
        1 ctcgccgagc gagatgatat cgctcaacga cgtgaacaat gtggccgagc taatcgcgga
       61 gacctgtcgc acggtcacat cgaagaccga tttcacggcg cgttagcaag cgcagttcgc
      121 tgtgatttag caccaactaa aagagccgcc gtttccctca ggaaacggcg gctcttttag
      181 ttgcgcggtc gttcttagac gagcttggcg cgccgcttta tgaagccggc aagtccaatg
      241 aatccgctgc cgaggagtgc gaaagacgac ggttccggcg ttgttgcgac ggttccgaca
      301 tcgacattca tcgccacgtg tgagagctcc tggccggtcg cggagcgctg gtagatcgcg
      361 aaggaatact cgccgtttgc atcggggttg aagggaccga ggaacgtcca gtagcccagg
      421 ttggaagagt cggcatatcc taacgagttg gtgagagtga gtccaaaggt gttgctgagc
      481 gaggcgcccg ttgccgggtc atggtccaca tacagagtga agacgtccgt ggggttcgcg
      541 ttcccgatga aataatcgaa attccaggac gcaaagcctg catttgtggc tcctccggtg
      601 ctcatccccg gtgcggcgta gtacgttccg gcgccgttgt ttttcactgc ggggctcgtg
      661 tatctctgcg tcgctgagag tccgatgacc gcaccatttg cacctcctgt catcaccgca
      721 tcagtcggaa ttccactgcc gccgaagctg cctgcgggga ggctgccaaa cgtgccggta
      781 ggagtgatgg tctgggcgtg accgatgccg gcgccagcca gagtaactgc gaccgctgct
      841 gcgaccaagg atgtaacgcg attcttcatc taactctccc aaaaagtggt cccaggtctg
      901 ataggcctgg aattgtcacg cccgccgcat gatcccccgc ggctccatta ccagccgcgt
      961 cgagtcacac gttacgaagt cggaccggca ggtccttctg taagcgtcgt gtagcacggt
     1021 aggggccgcc tgtatcggat ttttgtgaca agtacaacgt gttgaatggc aacgacttgc
     1081 gatcacacgt ggagttttcc gtccgacggc atgtggatgg tctgtacgaa tctgaccatc
     1141 cgccgccaca gtttgtggtg tgtacgcaac agacggaagg cgcaagcagg atgcggttaa
     1201 attcggagtg tgcctcttcc gatccccgcc cccagggctg ccggctttac cacgtctacc
     1261 gcggtcccgc tttattgggt gcggtacggg gaggccggca ggcccgtcct cgtacttctc
     1321 cacggcggtc cgggtgccga ccatcggtac ctgctcccac agatgctgca ccttgccgag
     1381 aaatacgacc tgcttttata cgatcagcgc ggcggcggac agtcgcgcgc gtcggacaac
     1441 aagccgatcg gctggcgcga ccatgttgcg gacctcgcgg cggtatgtcg cgagtgtgat
     1501 attgcgatgc cgtcgatatt gggctattcg tggggaggaa tgctcacgct gctctacgcc
     1561 atcacccagt cccaggacgc gtcgctgccc aagccggctc ggctcgttct catgagtccg
     1621 gcgcccgtga cgacagaata tcgcgctgaa ttcgacgcga atctccgtgc tcgggggaac
     1681 gcgccggtca tcgcggacga gcgcgctatc ctcatggcgt cagatttgcg cgagagagat
     1741 ccggatgcat atcgccagag aatattcgag ctcggtgtgg ccggttattt cttcgatccg
     1801 gccaacgctc gcaacctcac accgttccgt gtggttggtc gcgtgcagca atcgacctgg
     1861 gaaagtctcg gccagttcga ccttcggccg gacatcgcgc gcttgcagat agcggcgcgc
     1921 gtcgtccagg gtcgtgacga tcccattccc gccgcgtctt caatcgatgt ggcgcacgct
     1981 ctcaaaaccg aacctgtatt tctggatcga tgtggccatg ttccatatgt cgagcgtccc
     2041 caggagctct gggaagcgat cgatccgttc ctcgcgtcaa ccgacgccgc agcttcccgg
     2101 tgaatgactg atttccgcgc cgagcaccat ctcgccacga tcgacgctga cggagcactc
     2161 tgcgacgtca tggttcgctt ctcgtacgac ggcctcgagc acatcggccg tctgtggttc
     2221 agtggcccag ccgttggcga caagccgttg ccggatcacg gcggaatccc tggccgcaca
     2281 atcgaagagg cgatccagct ctccgagcga ttcaccactg acgaccttct gcgtcgcttc
     2341 tatcgggccc gcgccgaaaa gcgcaaatat ctgcagttga ggcgtgcgac cgagcagatg
     2401 ctcgacaagg tgaaatacat gaatcgcatc gcactatcga tgaagggtgg gatgctcgat
     2461 gccgacgggg cgcgtcagga gctggacctc atagtcaagc agatgcacga gctggtggac
     2521 accatgccag ccatggccgg ggtcgaggaa acgcactagg cgttcgtcgt cgcccttagt
     2581 ttccgcgaca atgacattgc aacccgcttc tgcgcgcgcg ccgctcattt tcaagcggct
     2641 caggcgagcg tatcccgacg cgcattgcga gctggaccat acgaacgctt atcagctcct
     2701 cgtagcgacg atactcagcg ctcagtgcac tgataaacgg gtgaatctgg ttacgccggc
     2761 gctgttccag cgatatcccg atgccgaagc gctggcgatg gccgat
//
LOCUS       DATIMD010000533         2321 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3395229, whole genome shotgun sequence.
ACCESSION   DATIMD010000533 DATIMD010000000
VERSION     DATIMD010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3395229"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..855)
                     /locus_tag="VLI40_11920"
     CDS             complement(1..855)
                     /locus_tag="VLI40_11920"
                     /inference="COORDINATES: protein motif:HMM:NF013757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HSU97931.1"
                     /translation="MEQRSKTQTQPGTQAVVRAIAILKAMARPRCGFGITELAVLLGL
                     SKAAVFRLLGALEAEGMVVRDASGGYRLGPELITLGASALGSTDLSIAAHDELVALVE
                     LTGETATLEVLIGTEALIIGEVQGRFLLGSAPDLGRRSPAHVTSTGKVLLALTQPPPP
                     FGKLEKRTPKTIISRRKLELELERVRGQGYAIASEELEVGFTALAAPVRNHFGNVVAA
                     LSINGPSARLRPDVLRDLVGPVCAAANRISHRLGATQEMLGTPPVTRDVDAGSNKPGK
                     SRATAISR"
     gene            978..2117
                     /locus_tag="VLI40_11925"
     CDS             978..2117
                     /locus_tag="VLI40_11925"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSU97932.1"
                     /translation="MDAHIGFNTPAWGDNISPASFPKFDGDAETDVCVVGLGGSGLTC
                     IHELLRMGQRVIGIDAGTVGGGAAGRNGGFLLAGTAEFYHDTVAALGRDRARQIYQLT
                     LREMDRISAETPDSVRRNGSLRLADSEDEERDCQLQLSAMRADGLPVQPYEGPDGRGL
                     VFPADGSFNPLARCRTLAQRAVQLGARLHEQSRAISLGNGEVRTSDGRVLCKHVIVAV
                     DGHLELLLPELAGRVRTARLQMLGTGPAPEVDIPRPVYSRWGYDYWQQLPDGRVVIGG
                     CRDRFVDDEWTTDTNPTTEVQSCIERVLRDTVGVTQPVQHRWAAAVSYSSGILPVMDQ
                     VRQGVWAIGGYSGTGNVIGALYGRMVAQVAVMGTSELLPVLAPNV"
BASE COUNT          418 a          734 c          731 g          438 t
ORIGIN      
        1 ttaacgagaa atcgcggttg cgcgtgactt gccgggcttg ttcgatccgg cgtccacgtc
       61 gcgcgttacc ggcggtgttc cgagcatctc ctgcgtggcg ccgagcctgt gtgaaatgcg
      121 gttggcggcg gcgcagacag ggcctacgag gtcgcgcagc acatccggcc gaagtcgtgc
      181 gctggggccg ttgatgctca acgccgccac gacatttccg aaatgatttc gcacgggagc
      241 ggcgagcgcg gtgaagccga cttcgagctc ttccgacgcg atggcgtaac cctggccgcg
      301 cacccgctcc aattcgagct ccagctttcg ccgggagatg atcgttttcg gtgtgcgctt
      361 ttccagcttt ccgaatggtg gcggcggttg cgtgagcgcc agcagcacct tgccggtcga
      421 agtgacgtgc gccggcgatc gcctccccag atcgggcgcg cttcctagca gaaagcggcc
      481 ctgtacctcg cctatgatca aagcttcagt tcctatcagc acctcgagcg tggctgtctc
      541 accagtcagc tcgaccagag cgacaagctc atcgtgcgcc gcgatgctca gatccgtgga
      601 tccgagcgcg gaggcgccaa gtgttatgag ctccggcccg agccggtagc cgcccgacgc
      661 atcacgcacc accatgccct cggcttcgag agcacccagc agacggaaca ccgcggcctt
      721 gctgaggcca agcaatacgg ccaattccgt gataccgaac ccgcagcgag gccgcgccat
      781 cgccttgagg atggcgatag cgcgaaccac ggcctgagtg ccgggctggg tctgggtttt
      841 ggaacgctgt tccatgaaac gggcttacaa tgtagcccgg acgtaagaac gtcaagtatt
      901 aatcaattct ttcgcgacgc tggccttcgt ttacttcgct tgcctccggc ttcgcttgcc
      961 ggtactgtcc cgggatcatg gatgcgcata tcggtttcaa cactcccgcg tggggcgaca
     1021 acatttcgcc cgcgtcattc ccgaaattcg acggcgacgc ggaaacagat gtgtgcgtag
     1081 ttggattggg aggctccggt cttacctgca tccatgagct gttgcggatg gggcaacgtg
     1141 taatcggcat cgacgccggc acggtgggcg gaggggcagc cggccgtaac ggaggattcc
     1201 tgctcgctgg cacggccgag ttctatcacg ataccgtggc agcgcttggc cgggaccgcg
     1261 cgcggcagat ataccagctc acccttcgcg agatggaccg catctccgcc gaaacgccgg
     1321 attcggtccg gcgaaacggt tcgctgcgac ttgccgattc cgaagatgag gagcgagact
     1381 gccagcttca gctctccgca atgcgcgctg acggccttcc ggttcagccc tacgagggtc
     1441 ccgatggccg cggcctcgtc tttcccgcgg acggatcctt caatccgctg gcgcgctgcc
     1501 gtactctcgc acaacgcgcc gtgcagctcg gcgccagact ccacgaacag tcgcgcgcca
     1561 tatcactagg caacggagaa gtgcgcacga gcgacggacg cgtgctctgc aagcacgtca
     1621 tagtcgcggt agatggacat ctcgagctgt tacttccgga gctggcggga cgtgtacgca
     1681 ccgcgcgatt gcagatgctc ggcactggac ccgcgccgga agtcgacatt ccgcgccccg
     1741 tgtacagccg ctggggctac gactactggc agcagctacc ggacggacgc gtcgtgatcg
     1801 gcggatgcag agacagattc gtcgatgatg aatggacgac ggacaccaat cccacgaccg
     1861 aggtgcagag ctgcatcgag cgcgtcctgc gcgacaccgt cggcgtgacg cagccggtac
     1921 aacacagatg ggcagccgcg gtttcgtact cgtccggaat cttgcctgtg atggatcagg
     1981 tgcggcaggg agtctgggcg atcggcggct acagcggaac cggaaacgtg atcggcgcgt
     2041 tgtatggacg catggtggcg caggttgccg tcatggggac gtcggagctt ttgcctgtgc
     2101 tcgcaccgaa tgtgtaggtg gatcgggatt acgtcgtcat tcccgctctt gtgggaatga
     2161 cgcacgcaga tcaaccctac atcagatacc gcgcgcctcg ctctccgcgt aaatgctctg
     2221 cgagcactcg acgtgcttcc acggcttcgc cttccgacaa ccaatccgcg gcgacgattc
     2281 gcttccctcg accttcaacc gcgagcgctg cacgacctgc g
//
LOCUS       DATIMD010000534         7743 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_799651, whole genome shotgun sequence.
ACCESSION   DATIMD010000534 DATIMD010000000
VERSION     DATIMD010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7743
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_799651"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VLI40_11930"
     CDS             <1..305
                     /locus_tag="VLI40_11930"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HSU97933.1"
                     /translation="AKLRDSDADVRTLTAWALFTIRDTTSIPALQAALRTETDKDIQV
                     DYIRALGAMGEQSLSAIRGLLESPDPKIKSIAVDALAGGDARGPWPWPWPEPRPFP"
     gene            431..1798
                     /locus_tag="VLI40_11935"
     CDS             431..1798
                     /locus_tag="VLI40_11935"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HSU97934.1"
                     /translation="MLRVIGAVAAAAFVSTASAVRHDHSSVGVAGDDTASFDVSALLT
                     AAHGVSPNVCSLAARAVGNGSWGRSSDAPVTPLGASADIGDVLDSRNLPAPEIAKLFG
                     ALASDDPCVRELSVRLIGTQNSSTVTPQLLAPLTSSNASLRAIAAFGLGLVDAKTAVD
                     QLIHSLSDATADVRANSAWALGRIEDGRALSPLVSLFNDTSPVTRQAAVIAVGRMDST
                     NTSAALIRKLQHDDVASVRRAAAWALGTMDAKDGASALATTLANDSDARVREMSAWAL
                     GNLDDNTAAGALQRALQKDTDDKVRESAAWALGQLDDASSTDALASAAESDRSVKVRG
                     TAAWAIGQIGHADGRAVAGLTHLLKESDDNVRLRAAWALGQIEDSTALPEIDSALGIE
                     KNADVRRALIRAITKSGGNTAARMRVLIDSKDPQVREAAIRSLAGGRSFGPWPWPVPR
                     PRPWP"
     gene            1889..4630
                     /locus_tag="VLI40_11940"
     CDS             1889..4630
                     /locus_tag="VLI40_11940"
                     /inference="COORDINATES: protein motif:HMM:NF039587.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5916 domain-containing protein"
                     /protein_id="HSU97935.1"
                     /translation="MHAYRSAVVALFALAPLAIRAQETAASSIHPRTPPVAVAARRNG
                     PITLDGKLDDAAWNAATPITKFTQQQPHEGLPATQPTEIRILYDDQALYIGARVTDSL
                     GAKAIRAPLARRDQLLDANGNNGSFNSLTTDKIIVVLDPYHNHIDEAWFEVNPQGVKG
                     DQFDGDPSWDPIWEAATHVDSLGWTAEMRIPFSQLRFSRDSVQTWGMEVWRYIDRLNE
                     QDMWAYWKTSESGGPAYFGHLTGLKIAPQPRQFELLPYALSGVHSSYAAPTDPFHKST
                     STNLSAGMDLKYLLTSNLTLDATVNPDFGQVEVDPATINLSAYETFYDEKRPFFVSGS
                     SAFDYGGMSCNFCSNTSNLGLFYSRRIGRVPQLNSFVSGISAFSDLPNTTSILGAAKI
                     TGRTAGGITVGMLDALTNRESAEYMTTPGGPRFTQEVEPLSNYFVGRAKKEFRDGATT
                     VGGMLTSVARQMNDTILSDRLRSHAEAVGLDWDHRWSHRDYDWMGSVAASNVAGSPQA
                     IVLTEQSSAHYFQRPDRRVRGDGLFGAAYDSNATSLRGYGLYTRVAKTSGNWFWETAQ
                     NWRSPGFEVNDLSFLDRADYKWMNFNVGRNWNLPGSWYRSATILGGGQQQFNYDGDKT
                     DAQVQTFTQINFLNYWRLRSFYIYHPAVLDDRLTRGGPVVMRSGYRIMDGQISTDPRA
                     RAVFDVSVQGGPSVGAPGHQLSIAPGIALKPASSIFISLTPTFSSSEDDAQYVTTESD
                     PTATAFYGHRYVFAYLRAETWSLDTRINWTFTPNLTLQLYAQPYFSSGDYSSFREFAA
                     PRTIRKVVYGRDAGTIVRTPANATSGATYTVDPDGAGPAKPFNFGDPNFAYRSLIGNA
                     VLRWEYRPGSTVFFVWTQTRSGTDDVGNFDFTRDRTALLSDRPTNIFQIKVNYWLGR"
     gene            4696..5040
                     /locus_tag="VLI40_11945"
     CDS             4696..5040
                     /locus_tag="VLI40_11945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97936.1"
                     /translation="MQHVAPLASPRESIFAVLASSARRLSYGDLSVIAAASGAVALVA
                     AAIGHASWMLLSACYVVWCFAGWGILFHTSTPRTARWKTFQWTLVGSASVVAVVLGIG
                     VFFWALGPSWKL"
     gene            5156..6283
                     /locus_tag="VLI40_11950"
     CDS             5156..6283
                     /locus_tag="VLI40_11950"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HSU97937.1"
                     /translation="MPNRHARVIRAAITAASLLAVTAPALHAQAVPATKAQAAKTTPA
                     VVKHTVKRGDTLWDIARYYLKDPFRWPEVFHANTDIVKNPHWIYPGQVLTIDGSAVKP
                     EVAAQADSTGFVVAQIQTRAQSPTVFAEHQNTLDQRLAGATAIPPALTVRPGEYEAAP
                     YVVDEHAHLDAGRVIGPVDRPALGLSSDAGFRLFDRIYITIPSGVNVGDRVVVARTNQ
                     TIPDIGRVIEPTAIMRIDSLGADSRAIGVIVKQFGTVVPGQNIVLPGRSFESTSTRPV
                     AGTYPLTAKLVWVQGSPRLPSVQTYVILAAGEGKGVRPGDQFTLLSDGRFSDGTAAPL
                     SATATVTVVRVTPFGASGIIVHQDQPEVQIGMPSRLTAKMP"
     gene            6356..7075
                     /locus_tag="VLI40_11955"
     CDS             6356..7075
                     /locus_tag="VLI40_11955"
                     /inference="COORDINATES: protein motif:HMM:NF013760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HSU97938.1"
                     /translation="MIQILAWAQVGVVPTTPLDMVISATAPTKIVLGVLIGLSLISWA
                     IMFAKWAQFRGITRKSSAFMLNFERASSFEAAVDAARQSSDLPHGRILRRASEFLREV
                     TPALAATAGRAAKFSGSQVEALRLVLDAETNTARDRLSRYVPSLGTIGSVSPLIGLFG
                     TVLGVIEAFIGIASQGSGNIGAVAPGVAEALIATAAALAVAIPAVFGYNLFANRLNRI
                     DSELEGFGTELIALLVREGRI"
     gene            7076..7498
                     /locus_tag="VLI40_11960"
     CDS             7076..7498
                     /locus_tag="VLI40_11960"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSU97939.1"
                     /translation="MANRGRRRGERLPINAEINVVSLIDVMMLLMVIFMITAPIMQGG
                     VDVALPKAEARPLEAKSGLVVTVNRAGEIFVDKDKLTYPEFRASFKALASQHGKNGVY
                     LRADQGVPYGMVVRVLAVMRASGSTDVGLVAEPEDVPR"
     gene            7495..>7743
                     /locus_tag="VLI40_11965"
     CDS             7495..>7743
                     /locus_tag="VLI40_11965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97940.1"
                     /translation="MSRRAGEGGLSGSLGVSAVVHLTIIGLAIWALRPGPPVVLPPIY
                     KVDIVAAPPGPRAIGEVTRAPAPVNPAPTPPKMRETPSS"
BASE COUNT         1490 a         2407 c         2402 g         1444 t
ORIGIN      
        1 tcgcaaagtt gcgcgatagc gacgccgatg tgcgaaccct gactgcctgg gcgttgttta
       61 cgatccgcga cacaacgtcc attccggcat tgcaggccgc actccgcacc gagaccgaca
      121 aggacatcca ggtggactac atccgcgcgc tcggcgcgat gggcgagcag tcactgagcg
      181 ccattcgcgg tctgctcgaa tcgccggacc caaagatcaa gtcgatagct gtagatgcgc
      241 tggcaggtgg tgatgcacgc ggtccgtggc cctggccctg gccggaaccg cgaccgtttc
      301 cgtaggaacc gtacaagtgc gcgcgtaacg ttggcgcaac gccactacgc gcgcatgctt
      361 ttgatctgaa gtgctgattt ttcaccatac ggcccggtac agagatatgg gcaatcacgg
      421 aggaagaacg atgttgagag tcattggagc agttgcagca gcagcgttcg tgtcgaccgc
      481 aagcgcagtc aggcacgatc actcgtcggt cggcgtggcc ggcgacgata ccgcgtcgtt
      541 cgatgtgagc gcgctgctca ccgccgcgca cggggtgtca ccaaacgtat gctcgctcgc
      601 cgcgcgagcc gtcggcaacg gcagctgggg gcgctcgagc gacgcgccgg tgacaccgct
      661 cggtgcgtcg gcagacattg gagacgtgct ggactcgcgg aacctgcctg cgccggagat
      721 cgccaaactg ttcggtgcgc tcgcatcgga cgatccatgt gtgcgcgagc tttcggtgcg
      781 gctcatcggc acgcagaaca gctcgacggt cacgcctcag ctcctcgcgc cgctcacatc
      841 gagcaacgca tcactgcgtg cgatcgctgc tttcggactc ggtctcgtcg atgcaaagac
      901 agcggtcgat cagctcatcc actcgctcag cgatgcaacg gcggatgtgc gcgccaactc
      961 cgcgtgggcg ctcggcagaa tcgaggatgg tcgcgcgctg tcgccgctgg tctcgctctt
     1021 caatgataca tcaccggtaa cgcgtcaggc ggcggtcatt gccgtcggcc gaatggattc
     1081 cacaaacacg tcggctgcac tgatacgtaa gctgcaacat gacgacgtcg cgtccgtgcg
     1141 ccgcgcagcg gcatgggcac tcggaaccat ggatgcaaaa gatggagcgt ctgcactggc
     1201 gacgacgctc gcaaacgaca gcgatgcgcg agtgcgcgag atgagcgcct gggcgcttgg
     1261 gaatctcgat gacaacaccg ctgcgggcgc gcttcagcgt gcgctacaga aggatacgga
     1321 cgacaaggtg cgcgaatcgg ctgcatgggc cctcggccag ctcgacgacg catcctcgac
     1381 tgacgctctt gcaagtgccg cggagtcgga caggagcgtg aaggtgcgcg gtacggcggc
     1441 gtgggcaatc ggtcagatcg ggcatgctga cggtcgcgcg gttgccggcc tcacgcatct
     1501 attgaaggaa tccgatgaca atgtaagact tcgcgcagcg tgggcgctcg gccagatcga
     1561 ggacagcacc gcgctcccgg agatcgattc cgcattggga atcgaaaaga acgctgacgt
     1621 gcgccgtgcg ctcattcggg ccatcaccaa atccggcggt aataccgcag cgcggatgcg
     1681 cgtgctgatc gactcgaagg atccccaggt gcgcgaggcc gccattcgct cgcttgcagg
     1741 cgggaggtca ttcggtccgt ggccgtggcc cgtgccgcgc ccgcgcccct ggccgtaaat
     1801 cggcgcatgt cgcaagcaac cttttgagtg ccggtgtcat ctaaccaccc gatggctaca
     1861 atcagacact attccgaaac aactacccat gcacgcatat cggtcagcag ttgttgcgtt
     1921 gtttgcgctc gcaccgctcg caattcgcgc gcaggaaacc gccgcgtcgt caatccatcc
     1981 gcgcacgccg ccagtagcag tggcggcgcg ccgtaacgga cccatcacac tcgacggcaa
     2041 gcttgacgac gcggcgtgga acgctgcaac accgataacg aagttcactc agcaacaacc
     2101 gcacgaagga ctgccagcga ctcaacccac cgagattcgc atcctctatg acgatcaggc
     2161 gctgtatatc ggcgcacggg tgactgactc cctgggagcg aaggcgattc gcgccccgct
     2221 cgcgcgacgc gaccagttgc tggacgccaa cggtaacaac ggctcgttca actcgctgac
     2281 gaccgacaag atcatcgttg tcctcgatcc ttaccacaac cacatcgacg aggcgtggtt
     2341 cgaggtgaat ccgcagggcg tcaagggtga tcagttcgac ggcgatccgt cctgggatcc
     2401 catatgggaa gccgcgaccc acgtcgattc acttggctgg accgccgaga tgcgtatccc
     2461 gttctcgcaa ctgcggttct cgcgtgattc cgtgcagaca tggggaatgg aagtctggcg
     2521 ctacatcgac cgtctcaacg agcaggacat gtgggcgtac tggaagacga gcgagtccgg
     2581 aggtccggcg tactttggtc atctcacggg actgaagatc gcgccgcagc cgcgccagtt
     2641 cgagctgttg ccctacgcgc tgagcggagt gcactcctcg tacgcggctc cgaccgaccc
     2701 attccacaaa tcgacgtcga ccaatctctc ggcgggcatg gacctcaagt acctgttgac
     2761 atccaacctc acgctcgacg cgactgtcaa tccggacttc ggccaggtcg aagtcgatcc
     2821 cgccaccatc aacctgtcgg cttacgagac gttctacgac gagaagcgtc cgttctttgt
     2881 gtcgggaagc agtgcgttcg attacggcgg aatgagttgc aacttctgca gcaatacttc
     2941 caatctcggc ctcttctact cgaggcgcat cggccgcgta ccgcagttga acagtttcgt
     3001 cagtggcatc tccgccttca gcgatctacc caatacgacg tcgatacttg gagcagcaaa
     3061 gatcaccggt cgcaccgcgg gtggcatcac ggtgggtatg ctcgacgcgc tcacaaaccg
     3121 cgagagcgcc gaatacatga cgacgccggg cggaccacgg tttacgcagg aggtcgagcc
     3181 gctcagcaat tatttcgtcg gaagagcgaa gaaggagttc cgcgatggag cgacaaccgt
     3241 cggcggcatg ctcacctccg tcgcgcggca gatgaacgac accatcctgt ctgatcgtct
     3301 acgcagtcat gcagaagcag tcggactcga ttgggaccac cgatggagtc accgcgatta
     3361 cgactggatg ggatcggttg ccgcgtcgaa tgttgccggc tcaccgcagg caatcgtact
     3421 gactgaacag tcaagcgcgc actatttcca gcggccggac cgtcgcgttc gcggcgatgg
     3481 attgttcggc gccgcgtatg atagcaatgc gacttcgctg cgtggttacg ggttgtacac
     3541 gagagtggcg aagaccagcg gtaactggtt ctgggagaca gcgcaaaact ggcgtagtcc
     3601 cggctttgag gttaatgatc tgtcgtttct cgaccgcgcc gactacaaat ggatgaactt
     3661 caacgtcggc cgcaactgga atctgcccgg tagctggtat cgcagcgcga caatactcgg
     3721 cggcggccag cagcaattca actacgacgg cgacaagacc gacgcgcagg tgcagacgtt
     3781 cacgcagatc aacttcctca actactggag actgcgcagc ttctacatct atcacccggc
     3841 agttctggat gatcgcctga cacgtggtgg tccggtagtc atgcggagcg gttacaggat
     3901 catggatggt cagatctcca ccgatccgcg cgcccgcgct gtgttcgacg tgtccgtgca
     3961 gggcggtccg agcgtcggcg cgcccggcca tcagctgtcg atcgcgcccg gaatcgcgct
     4021 caagccggcc tccagcatct tcatcagcct cacgccgaca ttcagctcca gcgaggacga
     4081 cgcgcagtac gtcactaccg agagcgatcc gactgcaacc gcgttctacg gccatcgcta
     4141 cgtgttcgcg tatctgaggg ctgaaacgtg gtcgctcgac acgcgtatca actggacctt
     4201 tacgccgaac ctgacgctgc aattgtatgc gcagccgtac ttctcgagcg gcgactactc
     4261 gtcgttccgt gaattcgctg cgccgcgcac gatcaggaag gtcgtctacg gcagggacgc
     4321 cggcacgatc gtgcgcacac cggcgaatgc gacatcgggt gcgacgtaca ccgtcgatcc
     4381 ggacggcgcc ggaccggcga agccgttcaa cttcggcgat ccgaacttcg cgtatcggtc
     4441 cctgatcgga aacgcggtgc tgcgctggga gtaccgtccg ggatcgactg tattctttgt
     4501 ctggactcag acgcggtccg gcacggacga tgtcggaaac ttcgatttca cgcgtgaccg
     4561 taccgcgctg ctgagcgacc gcccgacgaa cattttccag atcaaggtga actactggtt
     4621 gggaaggtag ccttcgtacc agtgaatccg gcgcacgcta gattcactgg tatcactgcc
     4681 agtcaggagg gggacatgca acacgtcgca cctttggcct caccgcggga aagtatcttc
     4741 gcggtgctgg cgtcgtccgc tcggagattg tcgtacggcg atctatcggt gatcgcggct
     4801 gccagcggag ccgttgcgct cgtggcagcc gcgatcggcc atgcgtcctg gatgctgctc
     4861 tcggcgtgct acgtagtgtg gtgcttcgca gggtggggga ttctattcca tacgtccaca
     4921 cctcgaaccg ctcgctggaa gacatttcag tggaccctcg tcgggtctgc aagcgtagtt
     4981 gcagtcgtcc tcgggattgg cgtctttttc tgggcactcg gtccaagctg gaagttgtag
     5041 cgctgtgaaa ataggatgcg gccggaccgg atgcggtacc tcgcaacggc ggggctgatc
     5101 ctaggttgga ggcaggtcaa agttgccgct tcactcgccc ggtcgtcctc caacgatgcc
     5161 aaacagacac gcgagagtca tacgcgcggc tataaccgct gcgtcgcttc tagcagtcac
     5221 tgcgccagcg ctccacgcgc aggcggtgcc cgcgacgaaa gcccaggctg ccaaaaccac
     5281 acctgcagtc gtcaagcaca ccgtcaagcg tggcgacacg ctatgggaca tcgccaggta
     5341 ctacctgaaa gacccgttca ggtggcctga agtctttcac gcgaataccg acatcgtcaa
     5401 gaacccgcac tggatttatc ccggccaggt tctcacgatt gacggatccg ccgtgaagcc
     5461 cgaagtcgcc gcgcaggccg actctaccgg cttcgtggtc gcgcaaatcc agacgcgcgc
     5521 gcagtcgcca accgtgtttg cagagcatca gaacaccctg gatcagaggc tcgcgggcgc
     5581 aactgcgatt ccgcctgcgc ttaccgtgcg ccccggcgaa tacgaggccg caccatacgt
     5641 agtggacgag cacgcgcatc tcgacgccgg acgtgtgatt ggacccgtcg accggccagc
     5701 actcggactt tcatctgatg ccggatttcg actgttcgac cggatctaca tcaccatccc
     5761 ctccggcgtg aacgtgggtg acagggtcgt ggtcgccaga accaaccaga ccatccccga
     5821 catcggccgc gtcatcgagc ccaccgcgat catgcgaatc gattcgcttg gcgccgactc
     5881 tcgggcaatt ggcgtcatcg tcaagcagtt tggaacagtc gttccggggc agaatatcgt
     5941 acttcccgga cgatcgttcg aaagcacgtc cactcgccca gtcgctggca cctacccgct
     6001 cacagccaaa ctcgtttggg tgcagggctc gccgaggctg ccgtcggttc agacgtacgt
     6061 gattctcgcc gctggcgagg gcaagggagt gcgcccgggc gatcagttca cgctgctgag
     6121 cgacggtcgt ttcagcgacg gaacggctgc tccgttgagc gctacggcaa cggtgactgt
     6181 cgttcgcgtc actccattcg gtgccagcgg aatcatcgtg catcaggatc aaccggaggt
     6241 ccagatcgga atgccgagcc gcctcacggc gaagatgccc tagctcgcat gtagcagaac
     6301 gatgccacta tgcacgacgc cggcttagat ttggcgtttt gccgacggag ttgtagtgat
     6361 tcagatattg gcctgggcac aggtcggcgt cgtgccgaca acgcctctcg acatggtgat
     6421 cagcgcgacc gcgcccacga agatcgtgct cggcgtgctg atcggattgt cgctcatcag
     6481 ctgggcgatc atgttcgcga aatgggcgca gtttcgcgga attacgcgca agtcgagcgc
     6541 gttcatgctg aacttcgagc gcgcgtcatc gttcgaggcc gccgtcgatg cagcgcgtca
     6601 atcgagcgat ttaccgcacg gacgcattct acgtcgtgcg agcgagtttc tgcgcgaggt
     6661 gacacccgcg ctcgcggcca ccgccggccg cgcggcgaaa ttcagcggat cgcaggtcga
     6721 ggcgctccga ctggtgctcg acgcggagac caacaccgcg cgtgaccggc tttctcgcta
     6781 tgtgccgtcg ctcggcacca taggctcggt cagcccactg attggcctgt tcggtaccgt
     6841 actgggtgtt atcgaggcct tcatcggaat tgcgtcgcag gggtcgggca acatcggcgc
     6901 tgtggcgcct ggcgtcgccg aggcactgat tgctaccgca gcggcactcg ccgtcgcaat
     6961 tcctgcggtg tttggctaca acctcttcgc gaaccggctg aaccggatcg atagcgagct
     7021 ggaaggcttc ggcaccgagc tgatcgcgct tctggtgcgc gagggacgga tctaggtggc
     7081 caatcgcggg cgccggcgcg gcgagcggtt gccgatcaac gccgagatca acgtagtgag
     7141 cctcatcgat gtgatgatgc tgctgatggt cattttcatg atcaccgcgc cgatcatgca
     7201 gggcggcgtc gacgtcgcac ttccaaaggc ggaagcccgg cccctcgaag cgaagagcgg
     7261 gctggtggtg accgtcaacc gggcgggcga gatatttgtc gacaaggaca agctcactta
     7321 tccggaattc cgagccagct tcaaggcgct ggccagccag cacggcaaga atggggtgta
     7381 ccttcgcgcc gatcagggtg taccctacgg tatggtcgta agagttctgg ctgtaatgcg
     7441 agcaagcgga tccaccgacg tcggcctagt cgccgaaccg gaggacgtgc cgcgttgagt
     7501 cgtcgcgcgg gcgagggcgg gctcagcggg tcgctgggtg tttccgccgt ggtgcatctg
     7561 acgatcattg gactggccat ctgggcactc aggccgggtc caccggtcgt tctgccgccg
     7621 atctacaagg tcgacatcgt cgcggcgcct ccgggcccac gcgcgatcgg cgaggtcacg
     7681 cgcgctccgg ctccggtcaa tccggcgccg acgccgccca agatgcgtga aacaccgtct
     7741 tcg
//
LOCUS       DATIMD010000535         4185 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1958257, whole genome shotgun sequence.
ACCESSION   DATIMD010000535 DATIMD010000000
VERSION     DATIMD010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4185
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1958257"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..392
                     /locus_tag="VLI40_11970"
     CDS             <1..392
                     /locus_tag="VLI40_11970"
                     /inference="COORDINATES: protein motif:HMM:NF017747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HutD family protein"
                     /protein_id="HSU97941.1"
                     /translation="TVLRGEGMRLSIAGSAPVEITRDSEPLAFPADVAADATLLGGTV
                     TDLNVMTRRDRLEHSMRRLRVAERIELALEAPLVLLVCAEAVAHVEVNTQTATLATLD
                     TLLLEDAPPTLQIFSATMALMYLIEIQ"
     gene            397..1290
                     /locus_tag="VLI40_11975"
     CDS             397..1290
                     /locus_tag="VLI40_11975"
                     /inference="COORDINATES: protein motif:HMM:NF021507.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HSU97942.1"
                     /translation="MSSTMPFRVAGLLVAVALVGCHSFSSAAATPSLGVMPFPVDRVA
                     TQTVATGVIHRTLRSSAGPWTINVLYVDLDRCNIVEAVKGADSATGRYRTSALLGALA
                     THEKVVGGVNADFFNLKDGSPTNLLVVNGRMLTPPNGQPVLAFDSTGVPHISTFTIHD
                     GRLAPFHPVNAVGGRPIIVSDSAIDAAVDTMGQAGFRARNPRTAAGIARAGRQLILVT
                     VDGREYQNAGMTLRELGDLMLALGARDAINLDGGGSTTFVYADPDSAGRLRVGNHPSD
                     KGGERTVGDALAIVHACGSSS"
     gene            1441..1713
                     /locus_tag="VLI40_11980"
     CDS             1441..1713
                     /locus_tag="VLI40_11980"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HSU97943.1"
                     /translation="MPQYLIERDIPGAGKLTSAELKTISQKSCGVLNQLGPQIQWVES
                     YVTGDRIYCVYRAPNEEMVREHARQGGFPANRVSEVTTVINPTTAE"
     gene            1908..2099
                     /locus_tag="VLI40_11985"
     CDS             1908..2099
                     /locus_tag="VLI40_11985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97944.1"
                     /translation="MQDLLLNEPWFLIEGLLWAALGVAIIQPSKRRAWVTMAAAGCIL
                     LTVVGVLRGLGIMGSFRVG"
     gene            2660..3439
                     /gene="xth"
                     /locus_tag="VLI40_11990"
     CDS             2660..3439
                     /gene="xth"
                     /locus_tag="VLI40_11990"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008311 - double-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HSU97945.1"
                     /translation="MKIATFNVNGVNGHLPSLLRWLGETSPDVACLQELKAPQEKFPE
                     AAIRDAGYGVIWHGQKSWNGVAILARGTEPVERRRGLPGDPEDLHSRYIEAIVDGVVI
                     GCLYLPNGNPAPGPKLEYKLGWMARLSLHAKELLSNVDGPVVLAGDYNVIPTDLDVYN
                     PARWQTDALFLPEVRDAFHSLVAQGWTDALRTLHPDEKIYTFWDYFRNAWGRNAGLRI
                     DHLLLNASATARLIGAGVDRQVRGWEKPSDHAPTWVELSKG"
     gene            3826..>4185
                     /locus_tag="VLI40_11995"
     CDS             3826..>4185
                     /locus_tag="VLI40_11995"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97946.1"
                     /translation="MTDLREQLQTTLGDCYAIERELGGGGMSRVFVARDVTLGRDIVV
                     KVIAPENAEGLSAERFTREVKLAARLQQANIVPVLTAGTSGNLPYYTMPFVRGESLRA
                     RLTSGTTLGVPEAVSILR"
BASE COUNT          827 a         1234 c         1260 g          864 t
ORIGIN      
        1 tcaccgtgct gcgcggcgag ggtatgcgtc tctccatcgc aggcagcgct cctgtcgaga
       61 ttacgcgcga ttccgaaccg ctggcattcc ctgcggacgt agcggcagac gcaacactgc
      121 tcggcgggac ggtcaccgac ctcaacgtga tgactcgccg cgatcgcctg gaacattcca
      181 tgcgacgttt gcgagtcgca gagcgtatcg agctggcact ggaggcaccg ctggtgctgc
      241 tggtttgcgc ggaagccgtt gcgcatgtcg aagtcaatac gcagacagcc acgctcgcga
      301 ctctcgatac acttcttctg gaagatgcgc cgccgacgct gcagatattc agcgccacga
      361 tggcactgat gtacctgatc gagatccagt aacaccatgt catccactat gccgtttcgc
      421 gttgcgggcc tgctcgtcgc agttgcgctt gtcggttgcc actccttttc atcagctgca
      481 gcgacgcctt cgctcggcgt catgccgttc ccagtggacc gggtcgccac ccaaaccgtc
      541 gccacgggtg tcatacatcg cacgctgcga tcttctgcag gtccgtggac gatcaacgtg
      601 ctttacgtcg acctggatcg ctgcaatatc gtggaagctg taaagggtgc cgactcggcg
      661 accggacgat acagaacgag tgcgctactc ggagcgctcg cgacgcatga gaaggtggtc
      721 ggtggagtga acgcggactt cttcaacctg aaggacggat cgccgacgaa tctcctggtc
      781 gtcaacggcc gcatgctcac cccgccgaac ggccagcccg tgctggcatt cgattcgacc
      841 ggtgttccac atatctcgac gttcacaata cacgatggac ggctcgcacc attccatccg
      901 gtgaacgccg tcggtggtcg tccgatcatc gtgagcgaca gcgcgatcga cgccgcagtg
      961 gacacaatgg gacaggctgg attcagagcg cggaatccgc gcacagccgc cgggatcgcg
     1021 cgcgccggcc gtcagctcat tctcgtcacc gttgacggtc gagagtatca gaatgcagga
     1081 atgactctgc gcgagctcgg cgacctcatg ctcgcacttg gtgcgcgcga tgcgatcaat
     1141 ctggacggtg gcgggtcgac gacgttcgtc tacgctgacc ccgattctgc tggccggctc
     1201 cgggtcggca accatccgtc ggacaagggt ggcgagcgta ctgtgggcga cgcgctggcg
     1261 attgtccatg catgcggaag ctcatcatga gcggattggc ctccaggagc cgagggccct
     1321 tcgtagcgtc ttcactcctg catgtcgtct tacggcaatg aattgcgatt atgtctttat
     1381 tgctggaagc ttccagtatt ttcagaattc gatcgcaatc ctccctttca tggggcccac
     1441 atgccgcagt acctgatcga gcgagacatt cccggtgccg gtaagcttac gtcagccgag
     1501 ctgaagacca tctcacagaa gtcgtgtggc gttctgaatc agcttggtcc acagatccag
     1561 tgggtggaga gttacgtcac gggcgatcgg atctactgtg tgtaccgcgc cccgaatgag
     1621 gagatggtac gagagcacgc acgccagggc ggctttccag cgaatcgagt gtctgaggtc
     1681 acgacggtga tcaatccaac taccgctgag taatcacaga taacgctcgt atcggcagta
     1741 cagcaatagg gcagtacagc ggttgtgccc caatggcaca catgggcaga ttgagacgat
     1801 aatgtccgat ctcgagcgct cagctccgca caatcaacgc tattgccgcc gcggcgatca
     1861 tcctgctcgg tagcgtgtgg ctgtcgttcg atcgtcatgc cgccgacatg caggatctgt
     1921 tactgaacga gccgtggttc ctcatcgaag gccttctctg ggccgcactc ggcgtcgcga
     1981 tcattcagcc atcaaaacgt cgcgcctggg tgactatggc tgccgcaggc tgtattctac
     2041 tgactgttgt cggagtgctc cgcggactcg gaatcatggg ctcgtttcgg gtcggttgac
     2101 gccgtagagg aagcagtatc atgaccagca atggcattca cgtcggaaaa ccagccatga
     2161 tctcgcgcgt acgtcgctgg tcgatattat ctcttcgcgg tatcgcaagc gcgtcattcg
     2221 ttctggtcgc gctcacctgc acgcgctacg agtgggtccc ggattacgat actcccgcgt
     2281 gcgccggcca ttcagggcag ccaagacctc atatttttct ttcagacact gcggcactca
     2341 tcgagccgtc tgtagtacgt ggacgtgttg tcgtagacga ttcgagccgg aaacccatgg
     2401 accatgcgac agtcgtcatc cgcggcactt caatgcgtgg aatggagaca gactcgacag
     2461 gaacgtttcg gttcgacaca gtcgcaccag gaaaatatct tatgcacgtt cgtcgcctcg
     2521 catacgtgcc tacgagcgac tccattcttg ttccacgtgg gggccgggat gtcgaagttc
     2581 ggttgagtgc aagcatgctg gacggtccgt gcagtggatt cgcatctgta agaatgagaa
     2641 aaccatggtg gaaaatctgg tgaaaatcgc aactttcaac gtgaacggcg tgaacggaca
     2701 cctgccttcc ctcctgcgct ggctcgggga aacgtcgccg gacgtcgcat gtctgcagga
     2761 attgaaggcg ccgcaagaaa agtttcccga ggcggcgatc agagacgcgg gttacggcgt
     2821 gatatggcat ggacagaaga gctggaacgg cgttgcaatt cttgcgcgcg gcaccgagcc
     2881 agtggaaagg cgacgcggtc tgccgggtga tccggaggat ctgcacagtc gctacatcga
     2941 agccatcgtc gatggagttg ttattggttg tctttacctg ccaaatggaa accccgcgcc
     3001 gggaccgaag ctcgagtaca agctcgggtg gatggcgcga ttgagcctgc atgcgaaaga
     3061 gttgctcagt aacgtcgatg gacccgtcgt gctcgccggc gactacaacg tgatcccgac
     3121 ggatctcgat gtgtacaacc ctgcgcgctg gcagactgat gcgctttttc tccccgaggt
     3181 gcgtgacgcg tttcacagtc tcgtcgcgca gggttggacc gacgcgctgc gcacgctaca
     3241 cccggacgaa aagatctaca ccttctggga ttacttccgg aacgcgtggg gccgcaacgc
     3301 cggattgcgc atcgaccatc tgctgctaaa cgcttcagca actgcgcgtc tgatcggcgc
     3361 cggtgttgac cggcaggtac gcggctggga gaagccgagc gatcacgctc cgacgtgggt
     3421 agaactgtcg aaggggtagg aacagacggc aggccatgct gttgcgttca tggttgcgca
     3481 tcgcacggtc catgttggtt cggcaccatt catcctggag caccgcctgc gcctcgggcg
     3541 acttcgggtc ccagcgctca ccccagagtg tcgttttctg cagtgccacg ctccgattag
     3601 acagtcacgc gcaagacccg tacgtttact gcgattcgcg gagtgcccat ttccaagttc
     3661 gaataaacaa acgtttacgg gtgaatcacg cgcccgtgct ctgctatcgc tgcccgcgta
     3721 ccttgtgtga ctcgtcggcc caggatcgac gaaagtcggg aacggcatcc gccgataatc
     3781 gcgccgcaaa gcgcgacctc ggcgcatcac cagaatgagc aaacgttgac ggatctccgc
     3841 gaacagcttc agaccacact tggcgactgc tatgccatcg agcgcgagct cggtggtggc
     3901 ggcatgtcgc gcgtgtttgt cgcgcgcgat gttaccctcg gccgcgatat tgtcgtcaaa
     3961 gtcatcgctc ccgaaaacgc tgaaggattg agtgcggagc gctttacgcg cgaggtgaag
     4021 ctcgccgcgc gtctgcaaca ggcgaatatc gtgcccgtgc tcactgcggg aacgtccggc
     4081 aacctgccgt actacacaat gccgttcgtg cgcggtgagt cattgcgcgc gcggctgaca
     4141 agtggaacga cgctcggcgt acccgaagca gtgagcatcc tgcgc
//
LOCUS       DATIMD010000536         1775 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4263128, whole genome shotgun sequence.
ACCESSION   DATIMD010000536 DATIMD010000000
VERSION     DATIMD010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4263128"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1520
                     /locus_tag="VLI40_12000"
     CDS             <1..1520
                     /locus_tag="VLI40_12000"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="secretin N-terminal domain-containing protein"
                     /protein_id="HSU97947.1"
                     /translation="PDVSHDDARSNDASPSIAPPRSTMTVVSQPSYLPSVQQSNQPRI
                     TVTYQDADIRDVIAAFATFAGRTIVTGRDVTGTVTAEIRNQPWDVALRAILQGQGLAA
                     SEDPASGIITVDSYANVQARQAFEPLVTQLIPVNYAKADSLVPVVTKLLARDCVAGGP
                     ASGAGAPSATATSFGNQTCITRGAVASNPGTNTLIVTETPSRMAGIINYVEALDVRTP
                     QVSIKAKIVFVDRTNIEDLGLSYDLGTQNQFFSTLAQRIDPTTLKPVTNADGVPVGLG
                     GGTPVTGNKIALGGNTLSGIADANNRIASPALQLVYSAAIGHFSLTSFLDALQEVRLA
                     DLQAEPSIVTVDNRQASIQVGQDIPVRVLDVSTQQTGGAGAVQPRATVNFHPVGIILQ
                     VTPHITNNHQVLLDVHAENSDAQLAGSDIGYVFNKQSADNRLLVNDGETAVIGGLTVT
                     QVTQSKSGIPMLVDLPLVGKLFGVTQKSEEKRDLLILITPHVIDDGERVRSSRER"
     gene            1522..>1775
                     /locus_tag="VLI40_12005"
     CDS             1522..>1775
                     /locus_tag="VLI40_12005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97948.1"
                     /translation="MTMHIRLSVVAVAALALGALACSDETLDSTSDHTAPTVALVKVT
                     SSVDTVLSFSANVGDNLGIARVHVDATGGVTAAFDTVFHSA"
BASE COUNT          365 a          557 c          524 g          329 t
ORIGIN      
        1 ggccggacgt gtcgcatgat gacgcccgct ccaacgacgc ctcgccatcg atagcaccgc
       61 ctcgctcgac gatgactgtg gtcagtcagc catcatatct gccgagtgtg cagcaatcga
      121 atcagccgcg cattacagtc acgtaccagg atgcagacat tcgcgacgtt atcgccgcgt
      181 tcgccacatt cgcgggccgc acgatcgtca cagggcgcga cgtaactgga acggtcaccg
      241 cggagattcg gaatcagcca tgggacgtcg cactgcgtgc gattctgcag gggcaggggc
      301 tcgctgcgtc cgaagatcca gcatcgggaa tcattaccgt cgacagctat gccaacgtgc
      361 aggcccgtca ggcgttcgag ccgctggtga ctcagctcat ccctgtcaac tacgccaagg
      421 ctgattcgct cgtgcccgtg gttaccaagc tgctcgcgag ggattgcgtt gcaggcggac
      481 cggccagcgg cgccggtgcg ccaagcgcca cagcgacgag cttcggcaac cagacgtgca
      541 taacacgtgg agcggttgcg tcgaatcccg gcaccaacac actgatagtg acggaaacgc
      601 cttcgcgcat ggccggcatc atcaactatg tcgaagcgct tgacgtccgg acgccacagg
      661 tgtcgatcaa ggcgaaaatc gtgtttgtcg atcgcacgaa tatcgaggac ctcggcctct
      721 cgtacgatct tgggacgcag aaccagttct tcagcactct tgcacagcgc atcgatccaa
      781 ccacgctcaa gccggtcacc aatgcggacg gtgtgccggt tggccttggc ggtggaacgc
      841 cggtcaccgg aaacaagatc gctcttggtg gaaatacgct atccggaatc gcggacgcga
      901 acaaccgcat cgcgtcacca gcgcttcagc tggtgtactc cgctgcgatc ggtcacttct
      961 cgctcaccag tttcctcgac gcgcttcagg aagtgcgcct cgccgacctg caggccgagc
     1021 cgagcatcgt gacagtggat aacaggcagg caagcattca ggtcggccag gacatccccg
     1081 tacgtgtgct cgacgtgagc acccagcaga ccggcggagc tggagccgtt cagccgcgcg
     1141 ctacggtcaa tttccatccg gtcggtatca tccttcaggt cactccgcac atcacgaaca
     1201 accatcaggt actgctcgat gtgcatgcgg agaactcgga tgcacagctg gctggatccg
     1261 acatcggcta tgtgttcaac aagcagagcg ccgacaaccg tctgctcgtg aacgacggtg
     1321 agaccgccgt tatcggtggc ctcacggtta cgcaggttac tcagagcaag agcggcattc
     1381 cgatgctcgt cgacctgccg ctggttggca agttgttcgg cgttacgcag aagtccgaag
     1441 agaagcgcga ccttctcatt ctcatcacgc cgcacgtcat cgacgacggt gagcgggtga
     1501 gatcgtcccg tgagcggtaa catgacaatg cacatcagac tttccgtcgt ggcagtcgcg
     1561 gcgctcgccc ttggcgcgct cgcgtgcagc gacgagacac tggacagcac gagcgatcac
     1621 accgcgccta ctgtcgccct ggtaaaggtg acgagcagcg tcgatacagt gctctcgttc
     1681 tcggccaatg tcggagataa tctcggaata gcacgagtgc acgtcgacgc gaccggtggc
     1741 gtgaccgctg cgttcgatac cgtctttcac tcggc
//
LOCUS       DATIMD010000537         7207 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3970185, whole genome shotgun sequence.
ACCESSION   DATIMD010000537 DATIMD010000000
VERSION     DATIMD010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7207
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3970185"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VLI40_12010"
     CDS             complement(<1..191)
                     /locus_tag="VLI40_12010"
                     /inference="COORDINATES: protein motif:HMM:NF013767.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HSU97949.1"
                     /translation="MDLSKYVDLFLSEGREHVAELSAALAELESMPTSADAIAAAFRA
                     VHSIKGMAAAMGYTLITERA"
     gene            complement(199..561)
                     /locus_tag="VLI40_12015"
     CDS             complement(199..561)
                     /locus_tag="VLI40_12015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU97950.1"
                     /translation="MSHTVLVCDDAVFMRTMLSDILQQAGFTIVGEADTGTKAVAKYK
                     ELRPDLVTMDIVMPDMGGIDAVREITAFDPKARVVMCSAMGQQALVVDAIQAGAKDFV
                     VKPFQPSRVLEAVQRVLG"
     gene            complement(558..905)
                     /locus_tag="VLI40_12020"
     CDS             complement(558..905)
                     /locus_tag="VLI40_12020"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSU97951.1"
                     /translation="MFRISGRAYACQVSAVREVVPLGRITRLPGAPDTVLGLINVRGG
                     IVTVVNAGAVLHPDAGGVPLRMVLIADVGTRGVGLAVERVADVRVLRPEEGYTELDVR
                     DVATRVVAISEDE"
     gene            complement(967..1980)
                     /locus_tag="VLI40_12025"
     CDS             complement(967..1980)
                     /locus_tag="VLI40_12025"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HSU97952.1"
                     /translation="MARRQGSRPLATSESFVAGELAGSRLDLLVAARLGQSRTAAATL
                     IANGHVTVNGVAERASYRAAADDLIAITEPPPASPRGDIQGEDIPLRIVYEDSDLLVV
                     DKAAGMVVHPAPGNWTGTLVNALLGRGSDLAEGGGPERAGLVHRLDKETSGLLIVAKS
                     DIAHQRLSAAIAARRVIRRYAVMAWGHLAADTLSVDQPIARDPRDRKRMAIVSTGKNA
                     RTDFRRLARFASADLLRAHLYTGRTHQIRVHLSSVGHPVVGDDVYGGGGGRRLAALPA
                     KRHFLHAAWLQFHHPVSGEHLDFRSPLPDDLHKSIAALGESPELYADTDPLTNLGFYN
                     FPV"
     gene            complement(1940..2479)
                     /gene="lspA"
                     /locus_tag="VLI40_12030"
     CDS             complement(1940..2479)
                     /gene="lspA"
                     /locus_tag="VLI40_12030"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: protein motif:HMM:TIGR00077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HSU97953.1"
                     /translation="MPNGQPDDVRPGAANPWIFWCVIIVVVALDVTSKAMAVYSLTPA
                     YTPHEIIGNVVRFTLAYNPGAAFGFNLGSASRWIFTVLTLVALGVLATLYRSTREGDY
                     TRVLAIALVSAGAIGNLIDRIRWSVGVVDFIDVGFGDHRFWTFNVADSAVTIGAILLG
                     WVFLQQDREAARIAAAGDV"
     gene            complement(2460..2807)
                     /locus_tag="VLI40_12035"
     CDS             complement(2460..2807)
                     /locus_tag="VLI40_12035"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA C4-type zinc finger protein"
                     /protein_id="HSU97954.1"
                     /translation="MLEERSRVVKELGNYSDAFNVSAQDGGSESAYSFHMADQGTDAM
                     EREKAFLFASQEGRFLWHIDQALRRLYRDPENYGKCMNCHAPLMFERLDALPHARYCI
                     ECKQREEDAKRSA"
     gene            complement(2882..6100)
                     /gene="ileS"
                     /locus_tag="VLI40_12040"
     CDS             complement(2882..6100)
                     /gene="ileS"
                     /locus_tag="VLI40_12040"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HSU97955.1"
                     /translation="MGTQEAPVTARYRLLPADRAADGLEQEVLARWSEEELFRRIQRD
                     SAGLPEFVFFEGPPTANGRPGIHHVFARTVKDLFCRHRSMSGFHVTRKAGWDTHGLPV
                     EIEVEKQLGISGKQEIERIGVEKFNALCKESVFRYGEDWKRLSERIGYWLDYDDPYIT
                     YTNTYVESVWWALKTLFERDLLYRGHKILPYCPRCGTALSSHEVAQGYKTVKDPSAYV
                     ALTLQGSSTAPRRILVWTTTPWTLVSNVALAVNPVLQYVELVRTGKESEGSLILAESR
                     VTPLLGEDHADRWKEISRFAGSELVGLRYHRPLDWVAMSDGAHEIIIGESFVTAEDGS
                     GVVHMAPAFGADDYAAGKRHGLAFMQPVDARGRFPDTLPLVGGMWVKDADKLIIEELK
                     RRGALWKVQQYEHSYPHCWRCDTPLLYYARTSWFVRTTGFKDDMLRRNASVDWHPPEV
                     GSGRFGEWLENNIDWAISRDRYWGTPLPVWVNDADPNEIDVIGSYADLAQRVGHALPN
                     DFDPHKPFIDHYTWPARSGHGTMRRVPEVIDTWFDSGSMPFAQWHYPFERRDTFARHY
                     PADLIAEGVDQTRGWFYSLLAIATGLGSSLSDTAGNSPPYRSVVVNDLVLDKDGVKMS
                     KSRGNAVEPWKVLETHGADAVRMFLIASSQVWLPRRFDESLIRETIGRFLLTLKNVYS
                     GIFATYANFGWTPSLDDPAPDERPPIDRWALSRLSNVEKRCDQLLREYQATHAVNAVM
                     DFFMDDVSNWYVRLNRHRFYDVDTSDNRAAFATLHEILTVTCRLLAPFAPFVSDWIHQ
                     ELTGESVHVAPYVRPEPTRIDPALERAMADVRALATLGRAAREEVSIKVRQPLASVLC
                     VVPHHSADDVLRSLVPLIGTELNVKRVDFASSADDFVTLEAKPNFRTLGKKFAKETPD
                     AAALVAALSSDRLIAFEHGEILTITTATQAHELAPEDVTIVRRASGDLVVKYGDGYVA
                     AIDPAVTPELRREGISRELVNRVQRLRKELGFAVSDRIVLTVAGEPELTEAVAAHREW
                     IAAEVLAPELHSVPLLDGTHPAYHLDLDGLAADVTLTRIGSL"
     gene            complement(6105..6587)
                     /locus_tag="VLI40_12045"
     CDS             complement(6105..6587)
                     /locus_tag="VLI40_12045"
                     /inference="COORDINATES: protein motif:HMM:NF016959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HSU97956.1"
                     /translation="MIDEAFHLTPLDVRRFDFGRALRGYDPARVDQFRDQVAEEMERL
                     TRINQDLDQKARSFHEQLRAFRERDRALNDALVSAQQLRQETKEQAEREAMLIVREAQ
                     GEGERLLDEVRAEVRRVQEELATLERARRSYLSQMRTLITRHLSEIDASERPVPGTGE
                     "
     gene            complement(6584..>7207)
                     /locus_tag="VLI40_12050"
     CDS             complement(6584..>7207)
                     /locus_tag="VLI40_12050"
                     /inference="COORDINATES: protein motif:HMM:TIGR00044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HSU97957.1"
                     /translation="AARGGHGQTVKLVAVTKTHGPEAAIEAWEAGVPDCGENKVQEAL
                     GKMAQVDVPVVWHLIGHLQRNKVHELEHFALLHSLDSRRLADAVCDFGLKRKRAVDAL
                     IQVNASGEVSKGGFSPEELRAEADRLTGMPGIRVVGAMTMAPFGASELVLRQTFAGAR
                     HARQVLADAGHPATELSMGMSNDYEIAVEEGATLVRLGTALFGARDL"
BASE COUNT         1379 a         2331 c         2192 g         1305 t
ORIGIN      
        1 gcgcgctcgg tgatgagcgt gtaacccatc gccgctgcca ttcccttgat actgtgcaca
       61 gcgcgaaacg cggccgctat ggcgtcagcg gacgtcggca tgctctccag ttccgccagc
      121 gcggcgctca actcggcgac atgctcgcga ccctcactca ggaagagatc gacgtatttc
      181 gacaggtcca cgcgagacct accccagcac tcgctgcacg gcttcgagca cgcggctcgg
      241 ctggaacggc ttgacgacga agtccttcgc gccagcctga atcgcgtcga cgacgagcgc
      301 ctgctggccc atagcgctgc acatgacgac gcgcgccttg ggatcgaatg cggtgatctc
      361 gcgcacggcg tcgatgccgc ccatgtccgg catcacgatg tccatggtga cgaggtccgg
      421 acgcagctcc ttgtacttgg cgacagcctt ggttccggtg tcagcctcgc cgacgatggt
      481 gaaccctgcc tgttgcagga tgtccgagag catcgtgcgc atgaacaccg cgtcatcaca
      541 caccagaacc gtgtggctca ttcatcctcc gaaattgcga cgacgcgcgt ggcaacgtct
      601 cgcacgtcaa gttcagtgta gccttcctct ggccgcagca cgcgcacatc cgcaacgcgc
      661 tccaccgcga gcccaacgcc acgtgtgccg acgtctgcaa tgagcaccat ccgcagcggc
      721 acgccaccgg cgtccgggtg caggacggcg ccggcgttca cgacggtgac aataccgcca
      781 cgaacgttga tgaggccgag cacggtatcg ggcgcaccgg gcaggcgcgt gatgcggcca
      841 agcggaacga cctcgcgcac ggccgagacc tgacacgcgt acgcacggcc ggaaatgcga
      901 aacacgagcg accggtcatc ggtctccgga tcacagtcgg tggccgggac tgcggatgac
      961 ggtgtgtcag acggggaaat tgtagaaacc aaggttcgtc aaaggatcag tgtcagcgta
     1021 caactcgggc gattcgccga gcgcggcgat cgatttatgg aggtcgtccg gcagcggaga
     1081 gcggaaatcc agatgctcgc ccgaaaccgg atgatggaac tgaagccacg cagcgtgcag
     1141 aaagtgccgt ttcgccggaa gtgccgcgag tcgccgccca ccgccgccgc cgtacacatc
     1201 gtcgccaacc actggatgac ccaccgacga gaggtgaacc cgtatctggt gcgttcgtcc
     1261 cgtgtacagg tgggcccgca gcaagtcggc actggcgaag cgcgcaagcc ggcgaaaatc
     1321 cgtgcgtgcg ttcttcccgg tactgacgat tgccatacgc tttcggtctc gcggatcgcg
     1381 cgcgattggt tggtccacag acagagtatc ggcagcgaga tggccccagg ccatcacagc
     1441 gtagcgcctt atgacgcgtc gcgccgcaat ggcagcactg agacgctggt gcgcgatatc
     1501 gctcttggcg actatcagga gcccggacgt ctccttgtcc agccgatgga caagccctgc
     1561 cctttctggc ccgccgccct cagcgagatc gctcccccgc cccagaagtg cgtttacgag
     1621 ggtcccggtc cagttgccgg gcgccggatg aacgaccatt ccggcggcct tgtccaccac
     1681 gaggagatcg gaatcctcat acacgatcct gagcgggatg tcttcgccct ggatgtcgcc
     1741 acgcggcgat gccggaggcg gctccgtaat cgcgatcagg tcgtcggccg cggccctgta
     1801 cgaggcgcgc tcggcgacgc cattgacggt tacatgcccg tttgcaatca gcgttgccgc
     1861 ggcggttctg gattgaccga gcctggcggc aaccagcaga tccagtcgcg agccggcaag
     1921 ctcgcccgcg acgaaggact cagacgtcgc cagcggccgc gatccttgcc gcctcgcgat
     1981 cctgctgcag gaagacccac ccgagcagta tggcgccgat ggtcaccgcg gaatcggcaa
     2041 cgttgaaggt ccagaagcga tggtcgccga aaccaacatc gataaaatcg actacaccga
     2101 ccgaccaccg aatccggtcg atgagattgc cgatcgcacc cgctgaaacg agggcgatag
     2161 cgagcacccg ggtgtaatcg ccttcgcgag tcgagcgata cagagttgcg agcacgccga
     2221 gggctaccag cgtcagcacc gtgaatatcc agcgcgacgc cgagcccagg ttgaagccga
     2281 acgccgcgcc gggattgtaa gccagcgtga accggaccac gtttccaatg atttcgtgcg
     2341 gcgtgtacgc cggcgtgagc gagtacacgg ccatcgcctt ggatgtgacg tcgagcgcca
     2401 caacgacgat tatgacgcac cagaaaatcc aggggttggc ggcccctgga cgcacgtcat
     2461 caggctgacc gtttggcatc ttcctcacgt tgtttgcact cgatgcagta acgcgcgtgc
     2521 ggcagcgcgt cgagtcgctc gaacatgagc ggcgcatggc agttcatgca cttgccgtaa
     2581 ttctccggat cgcggtacag gcggcggagc gcctgatcga tatgccagag gaagcggcct
     2641 tcctggctcg cgaaaagaaa agccttctcg cgctccatcg catcggtgcc ctggtcggcc
     2701 atgtggaatg aataggcgct ttcgctgccg ccgtcctgcg cggagacgtt gaacgcgtcg
     2761 ctgtagttac caagttcctt gacgaccctc gagcgctcct cgagcaacct cttctcgaag
     2821 tgcttcagga actgctcccg cgtcattgtc ttgggcttct tggcccgtgt ggcgctcggt
     2881 gtcatagtga tccaatcctg gttaatgtga cgtcggcggc aagcccgtcg aggtcgagat
     2941 ggtacgccgg atgtgtcccg tcgagcagcg gaacagaatg taactccggt gcgagaacct
     3001 ccgcggcaat ccactcgcgg tgcgcggcca ccgcttctgt cagctcaggc tcgccagcga
     3061 ccgtcagaac gatcctgtcg ctcacggcga agcccagttc cttacgcaac cgctgtaccc
     3121 gattcacgag ttcacgagag atgccctcgc gacgcagctc tggcgtgacg gcagggtcga
     3181 tcgccgcgac gtagccgtcg ccgtacttga cgacgaggtc accactggcg cgccggacga
     3241 tcgtgacatc ttccggagcc agctcgtgcg cctgtgtggc ggtggtgatg gtgagtatct
     3301 caccatgctc gaacgcgata agcctgtcag agctcagggc cgcgacgagc gcggctgcgt
     3361 ccggtgtttc ctttgcaaac tttttaccca gggtcctgaa gtttggtttc gcttccagcg
     3421 tcacgaaatc gtcagccgag gaagcaaaat cgacgcgctt gacgttgagc tcggtgccga
     3481 tcagtggtac gagagagcgc agaacatcgt ccgcggagtg atgcggcacc acgcacagca
     3541 cggacgccag gggttggcgc accttgatgg agacttcctc gcgcgccgcg cggccgagcg
     3601 tagccagggc ccgaacgtcg gccatcgccc gctcgagcgc gggatcgatg cgggtgggct
     3661 cggggcgcac gtagggcgcg acgtgcaccg actcgccagt cagctcctgg tgaatccagt
     3721 cgctcacgaa tggcgcgaac ggagcaagca atcggcaggt gactgtgagt atctcgtgca
     3781 aagtcgcaaa cgcggcccga ttatcactcg tgtcgacgtc gtagaagcga tggcgattca
     3841 acctgacgta ccagttggaa acgtcgtcca tgaagaaatc catgaccgcg ttcaccgcat
     3901 gggtcgcctg atactcccgc agcagctgat cgcaacgctt ctcgacattg gatagccgtg
     3961 acagcgccca gcgatcgatc ggcgggcgct cgtccggcgc tggatcgtcc agggatggtg
     4021 tccagccgaa gttggcgtag gtcgcgaata tgccgctgta gacattcttg agcgtgagca
     4081 gaaagcggcc gatcgtctcg cgaatcaggg attcatcgaa ccgacgcggc agccagacct
     4141 gactcgacgc gatgaggaac atgcgcaccg catcggcgcc gtgtgtctcg aggaccttcc
     4201 acggctcgac tgcgttgccg cgactcttgg acatcttgac gccgtccttg tcgaggacga
     4261 ggtcgttcac cacgacgctc cgatacggcg gactgttgcc ggcggtatcg ctgagcgagc
     4321 tgcccaatcc tgtcgcgatc gcaagaagcg aatagaacca tccgcgcgtc tgatcaacgc
     4381 cttcggcgat gagatccgcg ggatagtgac gcgcgaatgt gtcgcgtcgc tcgaacggat
     4441 aatgccattg agcgaacggc atcgagccgg aatcgaacca cgtgtctatc acttccggca
     4501 cgcgccgcat ggtgccatgg ccggagcgtg caggccacgt atagtgatcg atgaacggct
     4561 tgtgcggatc gaaatcgttg ggcagcgcgt ggccgactcg ctgtgcgagg tcggcgtagc
     4621 tgccgatcac atctatctcg ttcgggtcgg cgtcattcac ccagaccggt agcggcgtgc
     4681 cccagtatct gtcacgcgat atcgcccagt cgatgttgtt ctcgagccac tcaccgaagc
     4741 gtccggagcc gacttcaggc ggatgccagt cgaccgacgc gttgcggcgc agcatgtcat
     4801 ccttgaagcc ggtggtgcgg acgaaccacg acgtgcgcgc gtaatacagc aacggcgtgt
     4861 cgcagcgcca gcagtgcgga taactgtgtt cgtactgctg caccttccac agcgcgccgc
     4921 gacgcttgag ctcttcgatg atgagcttgt cggcatcctt gacccacatg ccgccgacca
     4981 gcggcaatgt gtcgggaaaa cgtccgcgcg catcgacggg ctgcatgaac gcgagaccat
     5041 gtcgttttcc cgcggcgtag tcatccgcgc caaacgcagg cgccatgtgg acgacgcccg
     5101 atccatcctc tgccgtaacg aacgattccc cgatgatgat ctcgtgcgca ccgtcgctca
     5161 tcgccaccca atcgagcggg cgatgatagc gaagtccgac gagctcactg ccagcgaacc
     5221 tggagatttc cttccagcga tcagcgtgat cctcgccgag cagcggcgtg acgcgagatt
     5281 cggcgaggat gagcgagccc tcgctctcct ttccggtacg aaccagctcg acgtactgca
     5341 acaccgggtt cactgcaagc gcgacgttgg acacgagcgt ccagggagtc gtcgtccaca
     5401 cgagaattct gcgcggagcc gtcgaggatc cctgcaacgt caacgcgacg tatgcgctcg
     5461 gatccttgac cgtcttgtaa ccctgcgcaa cttcatgcga tgacagcgcc gttccacagc
     5521 gcgggcagta cggcagaatc ttgtgaccgc ggtacagcag gtcgcgctcg aacagcgtct
     5581 tcaacgccca ccagacactc tcgacatacg tgttggtgta cgtgatgtac ggatcgtcgt
     5641 agtcgagcca gtagccgatg cgctcgctga gacgcttcca gtcctcgccg taccggaaca
     5701 cgctctcctt gcagagcgca ttgaacttct cgacgccgat gcgctcgatc tcctgcttgc
     5761 cggagatacc gagctgcttc tccacctcga tctcgacggg gaggccgtgc gtatcccagc
     5821 cggcctttcg cgtgacgtga aagcccgaca tcgagcgatg gcggcagaag agatccttga
     5881 ccgttcgcgc gaagacgtgg tgaattcccg ggcgtccgtt ggcagttggc ggcccctcga
     5941 agaaaacgaa ctcgggaagt ccggcgctgt cgcgctggat gcgcctgaac aattcttctt
     6001 ccgaccagcg tgcaaggact tcctgttcca gaccgtcagc cgcacgatct gccggcaaca
     6061 accgataacg cgccgtcacc ggcgcttcct gtgttcccaa gactctattc tcccgtgccg
     6121 ggaacagggc gttccgacgc gtcgatttcc gaaagatggc gcgtgatcaa cgtgcgcatc
     6181 tgggacagat agctgcgacg cgcgcgttcc agcgtggcca gctcttcctg cacgcgccgc
     6241 acttccgcac gcacctcgtc cagaagacgc tcgccctcgc cctgcgcctc tctcacgatc
     6301 agcatcgcct ctcgctcggc ctgctccttg gtttcctggc gcagctgctg cgcggagaca
     6361 agcgcgtcgt tgagtgcgcg atcgcgctcg cggaaggcac gcagctgctc gtggaacgag
     6421 cgcgccttct gatccagatc ctgattgatg cgtgtgagcc gctccatctc ttccgcgacc
     6481 tgatcgcgaa actggtcgac gcgtgcggga tcgtagccgc ggagtgcgcg tccgaaatca
     6541 aagcgccgca catcgagtgg cgtcagatgg aatgcttcat caatcataga tcgcgagccc
     6601 caaagagagc ggtgccgagc cggaccagcg tggccccttc ctcgacagct atctcatagt
     6661 cgttggacat ccccatggac agttcggtag ccgggtgacc cgcatccgcc agaacctggc
     6721 gagcatggcg tgcaccggcg aacgtctgtc gcaacactag ctcggatgcg ccgaacggag
     6781 ccattgtcat cgcaccgacg acgcgaatac ccggcatgcc cgtcaaacga tccgcttccg
     6841 cacgcaactc ctcgggcgag aatccgccct tgctaacctc tcccgatgcg ttgacctgaa
     6901 tcaacgcgtc gaccgcacgc ttgcgcttca acccgaagtc gcagacggcg tcagcgagtc
     6961 gcctgctgtc gagtgaatgc agcaacgcaa agtgctccag ctcatggacc ttgttccgct
     7021 gcagatgacc gatgagatgc cacacaacag gaacatccac ctgcgccatc ttccctaacg
     7081 cttcctgaac cttgttctcg ccacagtcgg ggacacccgc ttcccacgcc tcgatggcgg
     7141 cttcgggacc atgtgtcttg gtcacggcaa cgagcttcac cgtctggccg tgtcctccac
     7201 gcgcggc
//
LOCUS       DATIMD010000538         1670 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1380431, whole genome shotgun sequence.
ACCESSION   DATIMD010000538 DATIMD010000000
VERSION     DATIMD010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1380431"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1634)
                     /locus_tag="VLI40_12055"
     CDS             complement(<1..1634)
                     /locus_tag="VLI40_12055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97958.1"
                     /translation="MDGEITFHDWHPVNIQEYGVAASDPKNPELVFGSQRTNISLYNR
                     TTGQTTLVGPDAEARGTQFGRNVRTMPIMWSPVNHNVLFYTSNVVWKSTDQAHSWTRI
                     SPDLARQTWAVPATVGKYSSSVKPAPQGSITALSASPRDVNVIWAGTDDGNIQVTTDG
                     GAKWTNVTPAQIKPWTRIFNIDAGHFDTQTAYAAANTMRIDDLNPHLWRTHDGGRTWT
                     EIDNGIAPGAATNSIREDPHKKGLLYASTETQVWVSFDDGDHWQSLRLDMPAVSVRDI
                     QIKDDSICMCSDLIAGTHGRGFYILDDVTPLRQAAEARSASGAYLFKPQTALRIRLAT
                     NDPTPWPPEVPAGENPPNGAIIDYYLSSNVSGPVTIDILDASNKVVRTYTSELKRDPD
                     PAVNRAAYDKVCQTTPESPDCDVPLYWPSRIKSMPTSAGMHRISWNMRYQPLATERGA
                     VDATGAVPDRSSPSPSSPWAPPGQYTVRLTVAGRSYTQPLTVRLDPRVKISPSALAEN
                     TKLSLEMYELARTTRMAYGQAHDLGEKVDQMVKEQHV"
BASE COUNT          273 a          542 c          505 g          350 t
ORIGIN      
        1 acgtgctgct ccttcaccat ctgatcgacc ttctctccca ggtcatgcgc ctgtccgtat
       61 gccatgcgcg tagtgcgcgc aagctcgtac atctcgagtg atagtttcgt gttctccgca
      121 agtgcagacg gtgaaatttt cacgcgcgga tcgagacgca ccgtcagcgg ttgcgtatag
      181 ctcctgcctg caacggtgag ccgaacggtg tactgaccag gaggcgccca cggcgagctc
      241 ggtgacggcg agctgcgatc cggcaccgcg ccggtcgcat cgaccgcgcc gcgttccgtc
      301 gcgagcggct gatatctcat gttccaactg atgcgatgca tgcccgcgct cgtcggcatg
      361 gacttgatgc gcgacggcca gtacaacggt acgtcgcaat ccggtgattc cggagtcgtc
      421 tggcatacct tgtcataggc agcccgattc accgcgggat ccggatcgcg cttgagctcg
      481 ctcgtgtacg tgcgcaccac cttgttactc gcatccagta tgtcgatcgt caccggcccg
      541 gacacgttcg acgacagata gtagtcgatg atcgcaccat tgggcggatt ctcgccggcc
      601 ggaacctccg gcggccacgg cgtcggatcg ttggtagcga gacgaatgcg caacgctgtt
      661 tgcggcttga acagatacgc gccactcgca ctgcgcgcct ctgccgcctg gcgcagtggc
      721 gttacatcat cgaggatgta gaagccgcgc ccgtgcgtac cggcgatgag atcggagcac
      781 atgcagatgc tgtcgtcctt tatctgtatg tcgcgcaccg acacggcagg catgtccagc
      841 ctgagcgact gccagtgatc gccgtcgtcg aacgacaccc acacctgggt ttccgtcgac
      901 gcgtacagca gtcccttctt gtgcggatcc tcgcggatcg aattcgtcgc ggcgcccggc
      961 gcgataccgt tgtcgatctc ggtccacgtc ctgccgccgt cgtgcgtacg ccagaggtgc
     1021 ggattgagat cgtcgatgcg catcgtgttc gccgctgcgt acgctgtctg cgtgtcgaag
     1081 tgacccgcat cgatgttgaa gatgcgcgtc cacggcttga tctgcgccgg cgtgacgttg
     1141 gtccacttcg caccgccgtc cgtcgtcacc tgaatgttgc cgtcgtcggt acccgcccat
     1201 atcacgttca catcccgcgg cgacgccgac agcgcggtga tgcttccctg cggcgccggc
     1261 ttcacactgc tcgagtactt gcccactgtc gcgggaacgg cccacgtctg gcgcgcgaga
     1321 tcaggactga tccgcgtcca gctgtgcgcc tgatcggtcg acttccacac cacgttcgac
     1381 gtatagaaga gaacgttgtg attcaccggc gaccacatga tcggcatcgt gcgcacgttg
     1441 cgaccgaact gcgtgccgcg cgcttccgcg tcggggccga cgagtgtcgt ctgaccggtc
     1501 gtgcggttgt acaacgagat gttggtgcgc tggcttccga acaccagctc cggatttttg
     1561 ggatcgctcg ccgcgacgcc gtactcctga atgttcacgg gatgccagtc gtggaacgtt
     1621 atctcgccgt ccatcgatcg gctgtccacg cacgccgatc cggaatcctg
//
LOCUS       DATIMD010000539         3580 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_801646, whole genome shotgun sequence.
ACCESSION   DATIMD010000539 DATIMD010000000
VERSION     DATIMD010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3580
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_801646"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1763)
                     /locus_tag="VLI40_12060"
     CDS             complement(<1..1763)
                     /locus_tag="VLI40_12060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HSU97959.1"
                     /translation="MRFHSARLTGVLALVVCVSVSCDSARTTPSATGSATDHAATQVV
                     AGGDTALTAPAFNMTEVQIPMRDGVHLHTLIYAPKSASGDLPILMTRTPYGIAGAGKS
                     LTNPVLEDLIRDGYIFVFQDIRGRFTSEGKFVMLRPMRDKHDSRATDESTDAYDTIDW
                     LIKNVPHNNGRVGMLGTSYPGWLTVMAMLDPHPALKAVSPRASPADMFIGDDFHHNGA
                     FRLSYGFEYATMMETNKEVTAFKFDTPDLYDWYLKLGSLAHVKERLHGNIPTWSDFSN
                     HPNYDAFWKRQAVAPYLDRVKVPTLNVAGWWDQEDFYGPVKIYETLEPHDTRNLNYLV
                     VGPWNHGGWSAKTGESLGAIDFGSPTSAYFRKNIEAPWFAYWLKNKGTLKLAEATTFE
                     AGSNTWQSHGSWPPRTGVTDRRLYFQGDHQLSFDRPATSAANTSVGGSASAFDSYISD
                     PANPVPYRKRPILPTYGKGSTWSRWLVDDQRFLQGRPDVLSWETPPLSSDVVIAGPIA
                     AHLFASTTGSDADWIVKLIDVYPQNEPDSTLRGYELMVANDVLRGRFRNGFTRPQAIT
                     PNHVDDYTIDLHTQDYRFLKG"
     gene            complement(1813..3432)
                     /locus_tag="VLI40_12065"
     CDS             complement(1813..3432)
                     /locus_tag="VLI40_12065"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSU97960.1"
                     /translation="MKIARSLRLHASLCASLCALLGACIVASTVAQPLAAQQQGQQQG
                     QQQTRQALDTAALDQYVARAARDWHVPGLAIAVVKDDSLVFARGYGVMQIGKPAPVTE
                     HTRFAIGSTTKAMTVAALAMLVDEGKLRWDDRVSDYLPDLRLYDPYATSQLTIRDLLT
                     HRTGLPGTDLLWIIPENQLTLPEMIRRLRYVKPASSFRSEWEYQNVMYAIAGGIVAKV
                     SGMPWEQFVRTRIFTPLGMTETIPLVSETIGKPNVATPHAEVHDTVRVVPVRTTDAIA
                     PAGSVWSSVSDMSKWMRFVLDSGRIGTTRLIKPATFSEIVAPEIRAPMTEYPALELAQ
                     PHFFSYALGWFVQDYHGQTVWMHTGSIDGMCAIIGLIPGQRIGVYVLENLDHAELRHA
                     LMYKVFDMYNATSNVHGNPPRDWSADLKALFAAKRAARASRAIAPGQVADSAQPSLPL
                     SRYAGTYADSAYGTVQVTLTDGALHARFVNFDIGQLEHSEYDTFRSRVDDPLEGITEL
                     TFVPDGAGHVSAVRAFGVEFQRSKSVPPTTM"
BASE COUNT          707 a         1063 c         1057 g          753 t
ORIGIN      
        1 tggcccttta gaaaccggta gtcctgcgtg tgcagatcga tcgtatagtc gtcgacatgg
       61 ttcggtgtga tcgcctgcgg tcgggtgaat ccgttgcgaa agcgtccgcg caacacgtca
      121 ttggcgacca tcagctcgta accacgaagc gttgaatcgg gctcattctg cggatagaca
      181 tcgatgagct tcacgatcca gtccgcgtca cttcccgtgg tggaagcaaa gaggtgcgcg
      241 gcaattggac cagcgatcac cacgtcgctg gaaagcggcg gtgtctccca cgagagcacg
      301 tccggccgcc cctgcaggaa tcgctgatcg tcaaccagcc accgtgacca cgttgagccc
      361 ttgccatacg tcggcaggat cgggcgcttg cggtacggaa ccggatttgc gggatcggaa
      421 atgtacgagt cgaaggcact tgcagagcca cctacagagg tattggctgc gctcgttgca
      481 ggtcgatcga acgacagctg gtggtcgccc tgaaagtaca gacgcctgtc ggtgacgcct
      541 gtgcgtggcg gccaactccc gtgcgactgc cacgtattcg atcccgcttc gaacgtagtc
      601 gcctcggcga gcttaagcgt tcccttgttc ttgagccagt acgcgaacca cggcgcttcg
      661 atgttcttgc gaaagtatgc ggaggtgggg ctgccgaaat cgatcgcgcc taggctctcg
      721 ccggttttgg cgctccatcc gccgtgattc cacggtccga cgacgagata gttgagattc
      781 cttgtgtcgt gtggctcgag tgtttcgtaa atcttgactg gcccgtagaa atcttcctga
      841 tcccaccatc ccgccacgtt caatgtggga accttcacgc gatcaagata tggagccacc
      901 gcctgtcgct tccagaacgc atcgtagtta ggatggttgg agaagtcgct ccaggtggga
      961 atgttgccgt gcaagcgttc cttcacatgc gcgagcgagc cgagcttgag ataccagtca
     1021 tacaggtccg gcgtatcgaa cttgaatgcg gtgacttcct tgttggtctc catcatcgtc
     1081 gcatattcaa agccatagct caacctgaat gcgccgttgt gatggaaatc atcaccgatg
     1141 aacatgtcgg cgggcgatgc gcgtggggaa acggccttga gtgccggatg cggatccagc
     1201 atcgccatga cagtaagcca gcctgggtat gatgtaccca gcattccgac gcgaccattg
     1261 ttgtggggga cattcttgat cagccagtcg atcgtgtcgt aagcgtcggt gctttcgtcg
     1321 gtcgccctgg aatcatgctt gtcgcgcatc ggccggagca tcacgaactt gccctcggac
     1381 gtgaaccggc cacggatgtc ctggaagacg aatatgtagc cgtcgcgaat caggtcttcc
     1441 agcacgggat tggtgaggct cttgcccgcg ccggcgattc cgtacggagt ccgcgtcatg
     1501 agtatgggca gatctccgga agcactcttc ggcgcgtaga tcagagtgtg cagatgaacg
     1561 ccatcgcgca tggggatctg cacttccgtc atgttgaacg ccggcgcggt cagcgctgta
     1621 tcaccgccag cgacgacctg cgttgccgcg tgatctgtcg cactacccgt agcagagggt
     1681 gtggtgcgcg cggagtcgca tgacacggat acgcatacca ccaacgcgag cacacctgtc
     1741 agccgtgcgg aatgaaatct catcgatctt ccatcgtggg tgaaacgtga gcgccgaccg
     1801 tggcgcgggt tgtcacattg tcgttggcgg tactgatttg cttcgctgga actccacgcc
     1861 aaacgctcgc accgcgctga catgaccggc accatcgggt acaaacgtca actcggtgat
     1921 accctcgagt gggtcatcca cgcggctgcg gaacgtatcg tactccgaat gctccagctg
     1981 gccgatgtcg aagttcacaa aacgagcatg cagtgcacca tcggtgagtg tgacctgcac
     2041 cgtaccatac gccgagtcgg cgtatgtgcc tgcgtatcgg ctcagtggaa gcgatggctg
     2101 cgcgctgtca gcgacctgcc ctggcgcgat cgcacgggac gcacgcgctg cgcgcttcgc
     2161 tgcgaaaaga gccttgagat cagcgctcca gtcacgtggc ggattgccgt gcacattgga
     2221 agtcgcattg tacatgtcga acaccttgta catgagcgca tgccgcagct cggcatgatc
     2281 caggttctcg aggacgtaaa cgccgatcct ctgcccggga atcaagccta tgatcgcaca
     2341 cattccgtcg atgcttcccg tgtgcatcca gaccgtctgg ccatggtagt cctgcacgaa
     2401 ccagcccagt gcatagctga agaaatgcgg ctgagcgagc tccagcgccg gatactccgt
     2461 catcggcgcc cggatctccg gtgcgacgat ctcgctgaac gtcgccggct ttatcagtcg
     2521 cgttgtcccg atacgtccac tgtccagtac gaaacgcatc catttggaca tatccgacac
     2581 actcgaccac accgagccag ccggtgcaat cgcgtcggtc gtgcgcaccg gcaccacacg
     2641 tacagtatcg tgaacttccg cgtgcggcgt ggcgacgttt ggcttcccga tcgtttccga
     2701 gaccagtgga attgtctcgg tcatgccaag tggcgtgaat atccgtgtgc gtacgaactg
     2761 ttcccacggc atcccggaca ccttcgccac gattccgccg gcgatagcgt acatgacgtt
     2821 ctgatattcc cactcggaac gaaacgacga cgcaggcttc acatatcgga gccgtcgtat
     2881 catctccggc agcgtaagct ggttctcagg gatgatccac agcagatcgg ttcccggcaa
     2941 tccggtgcga tgcgtcagaa ggtcccgaat cgtgagctgg ctggtcgcgt atgggtcgta
     3001 caaccgaaga tccggcagat agtcgctaac gcggtcgtcc cagcgcagct ttccctcatc
     3061 gacaagcatg gcgagcgccg cgacggtcat cgccttggtc gtggatccga tcgcgaaccg
     3121 ggtgtgctcg gtgacaggcg ccggcttgcc gatttgcatt acaccatatc ctctggcgaa
     3181 caccagagaa tcatccttca ccactgcgat cgcgagtcct ggtacatgcc agtcgcgcgc
     3241 agcacgcgct acgtactggt ccagagcagc ggtatcgagt gcttgccgtg tctgttgttg
     3301 tccttgttgt tgtccttgtt gttgtgcagc gagcggctgc gcgacggtcg atgcgacgat
     3361 gcatgcaccg agcaatgcac agagcgatgc acagagcgat gcatggagtc gtaacgaccg
     3421 cgcaatcttc aagcgacaac caccgatctg gcaggtgccg tcagcacctc ggtacgaact
     3481 gcgagtgact cgatgagatc cgtatttacg gtcacgccga tcccagcgcg atcacgtggg
     3541 acgcgcacca taccttcggc gtccattgtc cattcgggcg
//
LOCUS       DATIMD010000540         6032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3110221, whole genome shotgun sequence.
ACCESSION   DATIMD010000540 DATIMD010000000
VERSION     DATIMD010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6032
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3110221"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1317)
                     /locus_tag="VLI40_12070"
     CDS             complement(<1..1317)
                     /locus_tag="VLI40_12070"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSU97961.1"
                     /translation="MHIRPSLLRLAISLVLAVPLLMGARSAAAQQADVIRGLITGRDG
                     VAIAGVRVTVTSVSGNVSRTARTDNGGHFTVIFPGGDGDYFVSLAILGFAAKRFEIKR
                     SADEEILIADATMSAAVTQLDTVQVGGGRKPPPRGVAAPDISGTEHNVDVRNIDPAQQ
                     GDLAAMAASIPGVTLVPGADGDPSGFSVLGLSPDQNATTLNGMSYNGSNVPRDAGIST
                     SVVTNPYDVSRGGFAGAQLNVRSQPGSNYITRYTSANVDAPALQWTDAPGRALGQQYS
                     NVSLGGRVSGPLVFDKAFYNLAFQAGRRASDLRSLTSTDALGLQSAGVSLDSVARLMG
                     VLNREGVPLSAPQIGSSRETDQASVFGSFDFAPPSSTRGTAVNVTVSANLTGLSPAGT
                     LNTEVPAHGGDRKSAQGALQVGHSTYFGIGILSETQASVSTSANHGD"
     gene            1579..1803
                     /locus_tag="VLI40_12075"
     CDS             1579..1803
                     /locus_tag="VLI40_12075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97962.1"
                     /translation="MPSARRRRKNLFIDQRRIDRAKALLHADTETETIDRALALVEDL
                     AQFEAEVDRGLAGLIGKKGFADRFPDAGRR"
     gene            1800..2258
                     /locus_tag="VLI40_12080"
     CDS             1800..2258
                     /locus_tag="VLI40_12080"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HSU97963.1"
                     /translation="MSRLYLIDSNVYIRAFREAAFGVTLQEFHRNNLARLVVSAVVAT
                     ELLIGAQKPDRERAVLRSLVEPFRTRRRLITPSWSTWALAATVDRRIRRQPSNRLRLQ
                     QRSFMHDILIAASAREIGATIITENIADFTLIGRHVDIAFLPPWPPTSLA"
     gene            complement(2359..3258)
                     /locus_tag="VLI40_12085"
     CDS             complement(2359..3258)
                     /locus_tag="VLI40_12085"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HSU97964.1"
                     /translation="MQSIIARLGGGATVLALALALVPSGAAAQVAGLSFSNAVVQDLS
                     NNGNNANSCGHSSISSSTFETTSAILNCGPVLGGSASSTTSSSNATRTASALGTVNQT
                     GTQGQTFANGHSFSTQYSQLTVTGTPSATDNLIFHFLTTQSETGDFNSNSGYGFWNLT
                     VAGGTDNPVFVEHTAGTGMLSSGATQTAQGFDFTMPFTPTNGLFQYNFTVDAYGYITG
                     VATGNTTQTGSLWAMLAGIDVVDASGAFINSASFDQAGFGAINAVRSAEPPPTTAPEP
                     SSMALLGTGLVGLIPAARRRLKR"
     gene            3500..4360
                     /locus_tag="VLI40_12090"
     CDS             3500..4360
                     /locus_tag="VLI40_12090"
                     /inference="COORDINATES: protein motif:HMM:NF025029.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase catalytic domain
                     family protein"
                     /protein_id="HSU97965.1"
                     /translation="MASRKYLNLLPTLLIAATAVAYVGSNANPAYSASRRNGRALHSP
                     TTLASLHTGDVSSAIGSVFSGRASLKPVTHSEEIAADTRNALGALASTVGPLSNPSAL
                     PDAFESYFAFRSSHPDKVRKPYLYFVDYGLPSTKPRGYVFDMNALSIVDGPFMVAHGR
                     GSAATAAGVPTRFSNAFGAATTSLGLYVAQELYAFTGHAGGQPYHSVGLRLAGVSGDF
                     NDNARARGVVAHGAPYVTSARAGRSEGCPAMATARAQRLLPKLANGGLVFLFAPDSNW
                     MTHDPWIDAG"
     gene            complement(4406..5257)
                     /locus_tag="VLI40_12095"
     CDS             complement(4406..5257)
                     /locus_tag="VLI40_12095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97966.1"
                     /translation="MRSVGAVIPLIAIAMGSVGMYHHTVPNPAAVPAPAVGRTLTLTA
                     NDYAFTGMTARVSAGWVTIRMVNAGKELHMFASASVPRGMTTGAVLDSIMKDRVPKGF
                     TEWGGPNAVAPGDTNTVTLFLPAGSYVVGCFVVSPDGKTHFMKGMMGSFEVIAARDTG
                     VAPVSDRNIVLSTYHIAMDGGPLSKGPHVFMVRNSVKQTHDFVILKVLPGHTVAQALK
                     WFGNPPVGAPAAEPIGGTTGMHLNEQGYVNARFTPGTYVLVCWMKTNNKPHFQLGMQK
                     VITVPAT"
     gene            complement(5386..5697)
                     /locus_tag="VLI40_12100"
     CDS             complement(5386..5697)
                     /locus_tag="VLI40_12100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97967.1"
                     /translation="MYLIREIFYCKPGKVRPMVEKFATMSKLGEKVGMPRMRIMTDFC
                     AERYWTVVAEMEVPDLGAFEKMMAAPPASAEDMKQLEDVMKDYHDLVDHGKREIYKIE
                     G"
     regulatory      5940..>6032
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01051"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-GMP riboswitch class I; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="cyclic di-GMP"
                     /db_xref="RFAM:RF01051"
BASE COUNT         1139 a         1871 c         1829 g         1193 t
ORIGIN      
        1 gtcgccgtga ttggcggatg tcgatacact cgcctgcgtt tccgacagaa tgccgatgcc
       61 gaaatacgtg ctgtgtccaa cctgcaacgc gccctgcgca gacttgcgat cgcctccatg
      121 cgctggcact tcggtattca gcgtgcccgc tggcgacagc cctgtgaggt tggcgctcac
      181 cgtaacgttc acggccgttc cgcgagtgga gctcggcgga gcgaagtcga acgatccgaa
      241 gacggacgcc tggtccgttt cccggctgga cccgatctgg ggcgcggaga gcggtactcc
      301 ctcccgattc aggacaccca tcaggcgagc gaccgagtcg agactcacac cggccgattg
      361 caatccgagt gcatcggtac ttgtgagcga acgcaggtcg ctcgcccgtc gcccggcctg
      421 aaatgcaaga ttgtaaaacg ccttgtcgaa cacgagcggt cccgacactc ggccgccaag
      481 tgacacgttg ctgtactgct gccccagcgc gcggccggga gcgtcggtcc actggagcgc
      541 cggcgcatcc acatttgcgc ttgtatagcg cgtgatgtag ttggagcccg gctgcgagcg
      601 cacgttgagc tgcgcgcccg cgaagccacc gcgcgatacg tcgtatggat tcgtcacgac
      661 cgacgtggag atgccggcat cgcgcggaac gttggagccg ttgtacgaca tgccgttgag
      721 tgtcgtggca ttctggtcgg gcgacaggcc gagcactgag aagcctgatg gatctccgtc
      781 ggcgcccggg acgagtgtaa cgcccggaat gctcgccgcc atcgccgcga gatcgccttg
      841 ctgtgccgga tcgatgttcc ggacatcgac attgtgctcc gtgccactga tgtccggcgc
      901 cgcaactccg cgcggcggag gcttgcggcc accgccgacc tgtaccgtat cgagctgcgt
      961 gacagccgcg ctcatcgttg cgtcggcgat gagaatctcc tcatcagccg atcgcttgat
     1021 ctcgaatcgt ttcgcggcga agccgagtat tgcgaggctt acgaaatagt caccgtcgcc
     1081 gcccggaaag atcacagtga aatgcccgcc gttgtcggtt cgggcggtgc ggctgacgtt
     1141 gccggagacc gatgtcacag taacgcgaac ccctgctatc gctaccccgt cgcgacctgt
     1201 aatgagtccg cgaatgacgt ccgcttgctg ggctgcagcg gatcgagctc ccatgaggag
     1261 aggaactgcg aggacgaggg atatggcaag tcgcagcagc gacggacgga tgtgcattca
     1321 gtcgtgcgtg cgagttggga tcgggcctgg ggtccgacca tgtcaacgga tacagtaggg
     1381 ccgtacgaag atcgtgtcaa gaaaagaata gaattggggg tcaggtcttg ccccgtgcgc
     1441 ggtcaaatca acgcgtggtg tggcaaaagc tttcagtgac gggctacggc gcacggggca
     1501 agacctgacc cccaccagcc ttgtcggata cagacatcag ggctatctat acagataacc
     1561 ttcgttccgg atcctgtcat gccatctgcc cgccgtcgtc gcaagaatct ctttatagac
     1621 cagcgtcgca tcgatcgcgc gaaggcactg ctccacgccg ataccgaaac agagacgatc
     1681 gaccgagcgt tggccctcgt cgaagatctg gcgcaattcg aagccgaggt cgatcgcggg
     1741 ctcgcaggtc tgatcggaaa gaaaggcttt gctgaccggt ttcctgacgc cggtcgacgg
     1801 tgagcagact ctatctcatc gactccaatg tctacatccg cgcgttccgc gaggctgcat
     1861 tcggcgtaac ccttcaggag tttcaccgga acaacctggc gcggctcgtc gtgagcgcag
     1921 ttgtcgcgac ggaactgctc atcggtgcgc agaagcccga tcgcgagcgt gccgtgcttc
     1981 gctcactcgt tgagccgttc cgcacgcgcc gccgtttgat cactccttcg tggagcacat
     2041 gggcgctcgc tgctaccgtc gatcgcagga tccggcgtca gccgtcgaat cggctccggc
     2101 tgcagcagcg ttcgttcatg cacgacattc tgatcgcggc ctcggcgcgc gagatcggtg
     2161 ccacgatcat taccgagaac atcgccgatt tcacgctcat cggacggcac gtggatatcg
     2221 cgttcctgcc gccgtggcca ccgacttcgc tcgcctgacg agcgttgcgt aacagaagat
     2281 cgacgcgaaa tcaggtgcac gacggaagac gtgccccgac agcaccagca attgttgtcg
     2341 gggcaaagcg tgacggcgct accgcttcag tctccttcgt gccgctggaa tgagcccaac
     2401 gagccccgtg cccagcaacg ccatcgaact cggctccggc gccgtggttg gcggaggctc
     2461 cgcagaccgc acggcgttga tggctccgaa tcctgcctga tcgaatgaag ccgagttgat
     2521 gaacgcgccg cttgcatcta ccacgtcgat gccagccagc atggcccaga gggaaccggt
     2581 ctgggtcgtg ttaccagtcg caacaccggt tatgtaacca tatgcatcaa ccgtgaagtt
     2641 gtactggaag agcccattgg ttggcgtgaa cggcatggtg aagtcaaagc cctgagccgt
     2701 ttgcgtcgcg ccgctgctga gcatgccagt accggcagta tgctcgacga agacgggatt
     2761 atcggtgccg ccggcaacgg tcagattcca gaaaccatat ccgctgttgg aattgaagtc
     2821 tcccgtctcg gactgggtcg tgagaaagtg gaagatgagg ttgtccgttg ccgaaggggt
     2881 accggtaaca gtgagttgac tgtactgggt cgagaagctg tgaccgttgg cgaaggtctg
     2941 cccctgcgtg cccgtctgat tgacggttcc cagtgcactc gcagtccggg tcgcgttgga
     3001 cgagctggtg gtcgagctgg cgctgccgcc aagaacggga ccgcaattca ggatcgcgct
     3061 cgtagtctcg aatgtagacg acgatatgct ggaatggccg cacgagttgg cgttattgcc
     3121 attgttgctc aggtcctgta cgacggcatt ggaaaaactg agccccgcca cctgtgcggc
     3181 ggcaccggac gggacgagcg ccagggccag ggccagaaca gtggccccgc cgcccagacg
     3241 ggcgatgatg gactgcattg cagcgtctcc tgatcgaagg ttgtgcggca aggttaaatc
     3301 gcagtggtca acgtcatggc aaggaacgtc aagtcgttga gcggcttgac gttgtgcggt
     3361 actctatgag tggacccttc ccgggctccg gtgtaatatg aatgggtctc ggtcgtcatc
     3421 ccctggcggc actcgtaccc attcccgacc cgctgcccgg cgtttggtcc cgggctcgaa
     3481 ttacgcttct ggaatcgcca tggcatcacg caaatacctg aacctgctcc caaccctgct
     3541 tattgcagcg accgcggtcg catacgtggg gtcgaacgcc aatcccgcgt attccgcatc
     3601 gcgcaggaac ggccgggcgc ttcattcgcc gacaacgctg gcgtccctgc acaccgggga
     3661 tgtaagctcg gcgatcggtt cggtattcag cggccgcgct tcactgaagc ccgtcactca
     3721 cagcgaggag atcgccgccg acacgcggaa cgccctcggc gcacttgcat cgacggtggg
     3781 cccgctcagc aacccgagcg ctctacccga tgcgttcgag agctacttcg ctttcaggtc
     3841 ttcgcatccg gacaaggttc gcaagccata cctgtatttc gtggactacg ggcttcccag
     3901 caccaagccg cgtggatacg tcttcgacat gaatgcgctc tcgatcgtcg acggtccgtt
     3961 catggtagcg cacggccgtg gatcggccgc tactgctgcg ggcgtaccca cgcgcttctc
     4021 caatgcgttt ggcgcagcca cgacgtcgct cggtctgtac gtcgcacagg agctttacgc
     4081 gttcacaggg cacgcgggtg gccagccgta ccattcggtc ggcctgagac tcgccggcgt
     4141 gtccggcgat ttcaatgaca atgcgcgcgc acgcggcgtc gtcgcgcatg gcgcaccgta
     4201 tgtcacatcc gcccgcgctg ggcgcagcga gggttgcccc gcgatggcaa cggcgcgcgc
     4261 ccaacgcctg ctccccaagc tcgcgaatgg tggtctggtg ttcctgttcg cgccggacag
     4321 caactggatg acgcacgacc cctggatcga cgctggttga agacgggtgg gtcgtgcggc
     4381 tccatacggc cgcttcgtca gatgatcatg tagccggaac ggtaatgact ttctgcatgc
     4441 cgagctggaa gtgcggtttg ttgtttgttt tcatccagca gacaagaacg taggtgccgg
     4501 gagtgaatcg ggcgttcacg tagccctgct cgttgagatg catccccgta gtgccaccga
     4561 tcggttccgc ggccggggcg cctaccggcg gattcccgaa ccacttgagc gcctgcgcga
     4621 ccgtgtgtcc aggaagcacc ttgagtatca cgaaatcgtg agtctgcttg acggaattgc
     4681 gcaccatgaa gacgtgcggt cccttgctca gcggaccccc gtccatcgcg atgtgatatg
     4741 tcgagagcac gatatttctg tcgctcaccg gtgcgacacc ggtatccctg gctgcgatca
     4801 cttcgaacga gcccatcatc cccttcatga aatgagtctt tccatccggg ctcacgacga
     4861 agcatcccac gacgtaagag cccgctggca ggaacagagt tacggtgttg gtgtcgcctg
     4921 gcgcaaccgc attgggacct ccccattccg taaatccctt cgggactcga tccttcatga
     4981 tcgaatcgag cacggcgccg gtcgtcatgc cgcgcggtac gctcgcactc gcgaacatgt
     5041 gcagctcctt gccggcgttg accatccgga tcgtcaccca gcctgccgaa acacgcgcgg
     5101 tcatgccggt gaacgcgtag tcgttcgcgg tcaatgtaag ggtgcgcccc accgccggag
     5161 ctggaaccgc cgccgggttc ggaaccgtat ggtggtacat gccaacagag cccatcgcta
     5221 ttgcgatgag aggaatcact gcaccgacgc tgcgcattcg gtcctcgatg gggttgggat
     5281 ttcagcaaca catgaacact gcaaccgccg tcagcgcggc ggtgtccgct tcatacgatc
     5341 gtatcgaatg gcacaaacga tagcatttct tccggcggta cgccatcacc cctcgatctt
     5401 gtaaatctcc cgcttgccat gatcgaccag atcgtgatag tccttcatga cgtcttcgag
     5461 ctgtttcatg tcctcggcgg acgctggtgg agcggccatc atcttctcga acgccccgag
     5521 gtccggaact tccatctccg ctacgaccgt ccagtaacgc tccgcacaga aatcggtcat
     5581 gatgcgcatg cgaggcatgc cgaccttctc accgagcttc gacatcgtag cgaacttctc
     5641 gaccatcggt cgcaccttgc ccggcttgca gtagaagatc tctcgaatca gatacataaa
     5701 tcgctccgga ttgatggtga tttcttcagc aacactctgc gtgcatgcga gatgctcgca
     5761 gtctgagggg agatcgtcaa ggctccgcga ttcggaaatg ccgcacggcc ccggagcagt
     5821 gggatcagcg atcgtatttc cagtcggtac gcgtgttact tatgtgaccg acccgcacgg
     5881 ttgcgcctcc gatagtcccg cgtccatatc catatcaccc cactcgctcc cgtcccggtc
     5941 agcgataacg gcataaccgg cgaaagccgg cgacgcaaag ccacgaggct acggtctccg
     6001 cactgattgt acgcgcggac tacgccagtc gg
//
LOCUS       DATIMD010000541         8924 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2242008, whole genome shotgun sequence.
ACCESSION   DATIMD010000541 DATIMD010000000
VERSION     DATIMD010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8924
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2242008"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..915)
                     /locus_tag="VLI40_12105"
     CDS             complement(<1..915)
                     /locus_tag="VLI40_12105"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HSU97968.1"
                     /translation="MSKGKDGGTAVANRAVKAEKADRTGVLGDYEIAYMSRQVSTLAR
                     GEVMLGRAMFGIFGDGKEVAQVALARSFELGDIRSGYYRDQTLMFALGLLTVQQFFAQ
                     LYAHADITADPASGGRGMNAHFGTRMLDDQGRWKNLTDQYQSSADSSPTGSQMPRLLG
                     LAYASKLYRDLKELHQFTQFSRNGNEIAFGTIGNASCAEGVFWEALNAAGVLQVPMLL
                     SVWDDWYGISVPNDMQVTKGSISELLQGFKRTREKKGFELEVVRGWDYPALVETFQRT
                     ADVVRAGHVPAVVHVIEMTQPHGHSTSGS"
     gene            1190..2476
                     /locus_tag="VLI40_12110"
     CDS             1190..2476
                     /locus_tag="VLI40_12110"
                     /inference="COORDINATES: protein motif:HMM:NF016354.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF512 domain-containing protein"
                     /protein_id="HSU97969.1"
                     /translation="MVRVARVQPDSVAAELGIVPGTEILSVDGRAISDFLDWEFLSAE
                     DELTVEVRQPDGETVIFEVERPELEPWGIMLEPPRVRQCANRCEFCFIEGLPTGLRKP
                     LYLRDDDYRLSFAYGNFATLSNVKERDIKRILEYRLSPLYVSVHATNWETRKVVLNNP
                     KVPNIIEQLTRLGEGGIQFHCQMVVVPGLNDGAVLEESLQDLWNMGDSVISAAVIPVG
                     LTQFSHLYTGKSMDRDTARGLLEHVERWSARGMRERGMSWVVGSDELYLLAERELPGE
                     EHYGDFAQIENGIGSVALLRVRVRDGVSQLPSMPGRRIGVVTGTSMRALMPPLLEQLT
                     RATGAHFELIVAENSLFGPTTTASGLLVGADIRRSLAERHDLDLALIPAETINEDGIF
                     LDDASFIAVRESLPMPVFPSYDFIDVLASEPSGVAA"
     gene            2473..3783
                     /gene="der"
                     /locus_tag="VLI40_12115"
     CDS             2473..3783
                     /gene="der"
                     /locus_tag="VLI40_12115"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HSU97970.1"
                     /translation="MSGTPVVAIIGRPNVGKSALFNRLVGGHTAIVSDEAGTTRDRHF
                     GRAEWNGRSFWLVDTGGLPENTREAIDGEIRKQVLEAIAEADLLAFVVDAQLGVHPND
                     AKVLDLLRESGKPWMVIANKVDDPTSTDFYEFYRLGAGEPIPVSATNGKGSGDLLDAI
                     TALLPETSEEETNAIRVAVVGRPNVGKSSLVNRMLGEQRLVVSEIAGTTRDAIDTPFK
                     YHGRDFIFIDTAGLRRQAKIDEGIEFYSSLRTRRAIERSDVCILVIDAVEGLHNQDLK
                     IATMAWDSGRALIVVVNKWDLKEKENNTAAKFEKEIVDKVPYLGFVPFVFTSALTGQR
                     VTKLFDLILQVESEREKRISTSDINDTLQSLLARRQPPQAAGREIKLNYATQVETSPP
                     TIAVFGNHPDLVQEHYIRFLHNGFRAAYGFTGNPLNIVLRRKSA"
     gene            3784..4440
                     /gene="plsY"
                     /locus_tag="VLI40_12120"
     CDS             3784..4440
                     /gene="plsY"
                     /locus_tag="VLI40_12120"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HSU97971.1"
                     /translation="MGSIHLPVIVAIVIAYIAGSIPSAYLAGKWRGIDLRQHGSGNLG
                     ATNVVRVLGIRIGALVFIVDTLKGFLPVFFLPALTGAAQPELISLAVGGAAIIGHVRP
                     VFLLGQKGGKGVATAGGVFLGVAWLPAIIAFAVWIVVFATSRYVSVASLSAALALPFA
                     FFFSGVPLSDPVFIASIIVALFVFFTHRANIGRLRRGEEHRFKSARTGGMSEQPPRIT
                     "
     gene            4465..5454
                     /locus_tag="VLI40_12125"
     CDS             4465..5454
                     /locus_tag="VLI40_12125"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HSU97972.1"
                     /translation="MRCAVLGAGAWGAALADRLARNAHDVRLWAYEPDVVESVNSSHR
                     NRFLAGVDLAPSIVASTEMKEVVQGAEFAVLVAPSHVTRAVAESAQPYLSPDAVVVVA
                     SKGIEQHSLARMTEVAADVFGRSGAVALSGPTFAAEVARNQPAAIVAACTERAPAEQV
                     QLLFHGPAFRVYTQHDVIGVELGGAVKNVMAVATGIAEGLGLGFNARAALITRGLAEM
                     TRLGVALGADPATFAGLAGMGDLVLTCTGQLSRNRSLGVEIGSGKTLDEALVGRDTVA
                     EGVITTRSARELAERAGVDMPIVDAVFSVLFDGQTPRDAIVDLMNRDPRAERD"
     gene            5469..5864
                     /locus_tag="VLI40_12130"
     CDS             5469..5864
                     /locus_tag="VLI40_12130"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HSU97973.1"
                     /translation="MATIPVREFFSIGDVCDLTDLKPHVLRYWESQFRFLHPAKNRSG
                     NRVYQRREVELIMLVKELLYVDKYTIEGARARVDEYRKNGALKTATRDALASSTVDAL
                     ERDLERIVSALDGIDTEEPAAEQEEEVAE"
     gene            5861..6568
                     /locus_tag="VLI40_12135"
     CDS             5861..6568
                     /locus_tag="VLI40_12135"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSU97974.1"
                     /translation="MIDRTDAPEVTGVPVCILPAFDADATVASVVASVRRHVSAVFVL
                     GVDDGSLDATRTVLKRACDHVICFDSNRGKGAALRAAFAHAAEHFPRSQVVTLDADGQ
                     HDPAFAPLLLGALDNADIVIGTREIGLPSVPPHRRIANFVSTAATRAVTRLQLTDSQS
                     GFRAFRPEVVAAIEAQGDRYEYETDFIVRASHRGYRITEVSVPTIYGPPSHFRELVDS
                     WRVARVLWSHRAAVFRS"
     gene            6593..7348
                     /gene="surE"
                     /locus_tag="VLI40_12140"
     CDS             6593..7348
                     /gene="surE"
                     /locus_tag="VLI40_12140"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HSU97975.1"
                     /translation="MKILCSNDDGVFAAGLDVLVRAASQLGDVTVVAPDREQSATSHS
                     LTMHRPLRPVHLPDGRYQVDGTPTDCVMLAIEGLMPERPDWVLSGINHGMNMGEDVLY
                     SGTVAAAMEGLVLGVPSIALSFAGGEMRSESEQLERHLPAVADLLRELTSLDVPSTTL
                     FNVNLPPVFGTDVKGVKLTRLGRRQYTNSIRPMSDPWGRPLYWIGAGSMSWTGGEDSD
                     YRAVEEGYISVTPLHLDLTNGPMIDSAESWWRR"
     gene            7336..7992
                     /locus_tag="VLI40_12145"
     CDS             7336..7992
                     /locus_tag="VLI40_12145"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HSU97976.1"
                     /translation="MAPVAETEYLGARRHLVQLLQEQGIRDLSVLHAIDEVPRHRFVP
                     TGVRHRAYEDSSLPIGSGQTISQPSIHARYLELLHLTGEERVLEIGTGSGYQTALLAR
                     MVAQVFSVERIGALLDRARDVLGEIGVRNVSFLLGDGTLGWRQYGPYDAILVSAAAPT
                     VPPAYMEQLADGGRLLIPLGEREEQILNVITRRGDALEQVEAGPVRFVPLLGKESWES
                     "
     gene            8003..8803
                     /locus_tag="VLI40_12150"
     CDS             8003..8803
                     /locus_tag="VLI40_12150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97977.1"
                     /translation="MLPPFVPPAARVSSETLPLITEFVVDRVEHSFESSFSVSGESGG
                     AVATATLPSIDEFLRDEPESAPDADHEFMQRTSRSPWGTYEAQHEISGAPGAPLPATP
                     AAALEPDLLPIEDHRAPPSGSEDAIVNEVAEPADAWAATAGGNVQEASADTDTKQAEP
                     AAAEAVVSSPAASEVWVSEERDAFDWHAVANLAVPPAEEQRAAEEWSSTEWDRSSGSM
                     QDHIAAQLAQVSRRVRSGELEVRGSKQMGPEAALVAALAALLSEQGRK"
BASE COUNT         1618 a         2772 c         2804 g         1730 t
ORIGIN      
        1 gctgcccgag gtcgagtgac cgtgcggctg cgtcatctcg atcacgtgaa cgacggccgg
       61 aacgtgaccg gcgcgaacga cgtcggctgt gcgctggaac gtctcgacga gtgcgggata
      121 atcccagccg cgaacgacct caagctcgaa cccctttttc tcgcgtgtcc gcttgaatcc
      181 ctgcagcagc tcggaaatac tgcccttggt cacctgcatg tcgttcggga ccgagatgcc
      241 gtaccagtca tcccagaccg acagaagcat cggaacctgc aacacaccag cggcgttcag
      301 cgcctcccag aacacgccct cggcgcatga cgcatttccg atcgtgccga acgcgatctc
      361 gttaccgttg cgcgagaact gcgtgaactg gtgcagctcc ttgagatcgc ggtacagctt
      421 ggacgcgtac gccagcccga gaagccgcgg catctgggaa ccagtgggcg agctgtcggc
      481 ggatgattgg tactgatcgg tgagattctt ccaccgtccc tgatcgtcga gcatgcgcgt
      541 gccgaagtgc gcattcattc cgcggccgcc cgatgcggga tcggcggtaa tgtcggcgtg
      601 cgcatacagt tgtgcgaaga actgctgaac ggttagcagg ccgagcgcga acatgagcgt
      661 ctggtcgcgg tagtagcccg accggatgtc accgagctcg aaggatctgg ccagtgcgac
      721 ctgcgcgact tcctttccgt cgccgaagat tccgaacatc gcgcggccca gcatcacctc
      781 gccacgcgcg agagtgctca cctgacgact catgtaggcg atctcgtaat ccccgagcac
      841 gccggtgcga tccgcctttt cggccttcac agccctgttc gcgaccgccg taccgccatc
      901 tttgcctttg ctcaacagtg ctccgatttt gtccacttat gcctgtcaga ggagttccgg
      961 ctacccgaaa gcgccccagc cttgaatatc gccagattgg cccgcgccct ggcacatcac
     1021 acccggcaga tcacacccgg cagatcacac ccggcagcga gcaatttagc cagccgcgtt
     1081 gcattttctg catccagggg agccagcggg caccaatctt acatccgaag cgacgtaact
     1141 cgttgtaatg cttggatttc ggcccctgag cctctaaatt tatcaggtta tggtacgagt
     1201 cgcccgggtc cagccagata gcgttgccgc ggagcttgga attgttccgg ggacggagat
     1261 tctgagcgtc gatgggcgcg ccatttccga tttcctcgat tgggagtttc tctcagcgga
     1321 ggatgagctc acggtcgagg tcaggcagcc cgacggagag actgtcatct tcgaagtcga
     1381 gcgaccagag ctggagccgt ggggcatcat gctcgagccg ccgcgcgtgc ggcagtgtgc
     1441 caatcgctgt gagttctgct ttatcgaggg actcccgacc gggcttcgca agccgctgta
     1501 tctgcgcgac gacgactatc gcctgtcatt cgcgtacggc aacttcgcaa cgctgtcgaa
     1561 cgtcaaggag cgcgacatca agcgcatcct cgagtaccgt ctctcgccgc tctacgtgtc
     1621 ggtacacgcg accaactggg agacgcgcaa ggttgttctc aacaacccca aggttccgaa
     1681 catcatcgag cagctcacgc gacttggcga gggcgggatt cagttccact gccagatggt
     1741 cgttgtccct ggtctgaacg acggcgcggt tctcgaagag tcgcttcagg atctctggaa
     1801 catgggcgac tccgtaattt cggccgccgt gattccggtt ggtctcacgc agttctcgca
     1861 cctgtacacg ggcaagtcga tggatcgcga caccgctcgc ggtctactgg agcacgtcga
     1921 gcgctggagt gcgcgcggaa tgcgcgagcg cggaatgtca tgggttgtcg gctcggacga
     1981 gctgtacctg ctggccgaac gcgagcttcc cggcgaggag cactacggcg acttcgccca
     2041 gatcgaaaac ggaatcggat ccgtcgcgct gctgcgcgtt cgcgttcgcg acggcgtgtc
     2101 gcaactgccg tccatgcccg gtcggcggat cggcgtcgtg actggcacct ccatgcgggc
     2161 gctcatgccg ccgctgctgg agcagcttac gcgagccacc ggcgcgcact tcgagctgat
     2221 cgtcgcggag aactcgctgt tcggcccgac cactaccgcg tcgggcctgc tcgtcggcgc
     2281 ggacattcgg cgctcacttg ccgagcggca tgacctggac ctggcgctca tccccgccga
     2341 aacaatcaac gaagacggaa tttttctgga cgacgcctca ttcatcgcgg ttcgcgaatc
     2401 gctgcccatg cctgtgtttc catcgtacga cttcatcgac gttctcgcgt ccgagccgag
     2461 cggggtggca gcgtgagcgg tactcctgtc gttgcgatca tcggacgccc gaacgtaggc
     2521 aaatcggctc tgttcaaccg actcgttggt gggcacaccg cgatcgtgag cgacgaggcc
     2581 ggcaccacgc gtgatcgcca ctttggacgc gccgagtgga acggcagatc gttctggctc
     2641 gtcgacaccg gtggacttcc ggaaaacacg cgcgaagcca tcgacggtga gattcgcaaa
     2701 caggttctcg aagcgatcgc agaagccgat ctgctcgcgt tcgtggtcga tgcgcagctc
     2761 ggcgtgcatc ccaacgacgc gaaggtgctc gacctgctgc gtgagtccgg caagccctgg
     2821 atggtcatcg ccaacaaggt cgacgacccc accagtaccg atttctacga gttctaccga
     2881 ctcggcgccg gcgagccgat tcccgtttcg gcaacgaacg gcaagggctc cggcgatctc
     2941 ctggacgcga taacagcgct gcttcccgag acgagtgaag aggagaccaa cgcaattcgc
     3001 gttgccgtcg tggggcgtcc gaatgtcgga aaatcatcgc tcgtgaaccg catgctcggt
     3061 gagcagcgtc tcgttgtttc cgaaattgcc ggtaccaccc gcgacgctat cgatacgccg
     3121 ttcaagtatc acggacgcga tttcatcttc atcgataccg ctggtctgcg gcgccaggcc
     3181 aagatcgacg agggaatcga gttctattcc tcgctccgta cgcgccgcgc aatcgagcgc
     3241 tccgacgtgt gcatcctcgt catcgatgca gtcgagggat tgcacaatca ggatctcaag
     3301 atcgccacca tggcgtggga ttccggtcgc gcgctgatcg tcgtcgtgaa caagtgggac
     3361 ctgaaggaga aggagaacaa caccgcggcg aagttcgaga aggaaattgt cgacaaggta
     3421 ccgtatctcg gcttcgttcc gttcgtcttt acatcggcac ttacgggcca gcgcgtaacg
     3481 aagctgttcg acctcatcct gcaggtcgag tccgagcgtg agaagagaat ctcgacgtcc
     3541 gacataaacg acactctgca gagcctgctg gcgcgccgcc agccgccgca ggccgcggga
     3601 cgcgagatca agctcaacta cgcaacacag gtggagacat cgccgccaac catcgcggtg
     3661 ttcggcaatc atccagatct ggtacaggag cactacatcc gctttctgca caacggattc
     3721 agagcggcct acggattcac cggcaatccg ctcaacatcg tgttgcggcg caaatcggcg
     3781 tagatgggtt ccatccatct tccggtgatc gtcgcgatag tcatcgccta catcgccggc
     3841 tccattccgt ccgcctacct cgccggcaag tggcgtggca tcgatctgag gcaacacggc
     3901 tccggtaatc tcggcgcgac aaacgtcgtc cgcgtgctcg gcatccggat cggcgcgctc
     3961 gtgttcatcg tcgacacgct gaagggcttt cttcccgtat tttttctgcc tgcgctcaca
     4021 ggcgccgcac agccggagct gatcagcctg gccgtcggcg gggccgcgat aatcggtcat
     4081 gtcagaccgg tctttctgct cggccagaaa ggtggaaagg gagtggcaac agcgggcggc
     4141 gtatttctcg gtgtcgcgtg gcttccggcg atcattgcat tcgccgtctg gatcgtagtg
     4201 ttcgcgacgt cgcgctacgt gagcgtcgct tcactgagtg cggcgctggc gcttccgttt
     4261 gccttcttct tcagcggtgt tccgctgtcg gatccggtct tcatcgcctc gatcatcgtc
     4321 gcacttttcg tcttcttcac gcatcgtgcg aacatcggac ggctgcggcg cggcgaggaa
     4381 caccgtttca agagcgctcg taccggcggt atgagcgagc agcctccccg cataacgtga
     4441 gcatcgattg aggggcgcgc cgcaatgaga tgcgccgtgc tgggcgcggg cgcgtggggc
     4501 gccgcactcg ctgatcggct cgcgcgaaat gcgcacgacg tccgactgtg ggcgtacgag
     4561 cccgacgtcg tggagtcggt gaacagctcg catcgcaacc gtttcctcgc cggcgtcgat
     4621 ctggcgccgt ccattgttgc gtcgacagaa atgaaagagg tggtgcaggg tgctgaattc
     4681 gctgtgctcg tcgcaccctc gcacgtaaca cgagccgtcg cagaatccgc gcagccgtat
     4741 ctgtcacccg acgccgttgt cgtcgtcgcg tcaaagggaa tcgagcaaca ttcgctcgcg
     4801 cgcatgacgg aggtcgcggc agatgtgttt ggccgatccg gcgcagtggc actttccggt
     4861 cccacattcg cggccgaagt cgcccgcaat cagcctgccg caatcgttgc agcctgcacc
     4921 gagcgagcac cggcggagca ggtccagcta ctctttcacg ggccggcgtt ccgtgtctat
     4981 acgcagcatg acgtgatcgg ggtcgagctc ggcggcgcgg taaagaacgt gatggcagtt
     5041 gcgaccggta tcgccgaggg actgggactt ggtttcaacg cgcgcgccgc tctcatcacg
     5101 cgaggactcg ccgagatgac ccgccttggc gtcgcgcttg gcgccgatcc tgctacattt
     5161 gcgggacttg ccggaatggg cgacctcgtg ctgacatgca ccggccagtt gagccgcaac
     5221 cgttcgcttg gcgtcgagat cggctccggg aagacgctgg atgaggcgct cgtcggacgt
     5281 gacaccgtgg cagaaggagt tatcaccaca cggtcggcga gagagctcgc cgaacgtgct
     5341 ggagtggaca tgccgatcgt ggacgcagtc ttttccgtac tgttcgacgg tcagacaccg
     5401 cgtgacgcaa tcgtcgattt gatgaaccgg gatccgcgcg ccgagcgcga ttagtgaagg
     5461 gagaaagcgt ggctaccata ccagtccgtg aattcttctc gatcggtgat gtgtgcgatc
     5521 ttaccgatct aaagccgcac gttcttcgct actgggagag ccagtttcgc tttctccatc
     5581 ccgcgaagaa ccgttccggc aaccgcgtgt atcagcgccg tgaagtcgag ctgatcatgc
     5641 tcgtcaagga attgctgtac gtcgacaagt acaccatcga aggtgcgcgc gcgcgtgtcg
     5701 acgaataccg caagaacggc gcgctcaaga ccgccacgcg tgacgcgctc gcgtccagta
     5761 ccgtcgacgc cctcgagcgc gacctggagc gaatagtcag cgcgctggat ggcatcgata
     5821 cggaagagcc ggcggccgaa caggaagaag aggtcgccga gtgatcgatc gaaccgatgc
     5881 gccggaagtg actggcgtac cggtgtgcat tctgcccgcg ttcgatgcag atgctactgt
     5941 tgcgtccgtc gtcgcgtcag tgcgccgcca tgtgagcgct gtgttcgtcc tcggcgtgga
     6001 tgacggctcg ctcgacgcga cgcgcaccgt gctcaagcgc gcgtgcgacc acgtcatctg
     6061 cttcgactcc aatcgcggca agggcgctgc attgcgcgca gcatttgcgc atgccgccga
     6121 gcactttccg cgcagtcagg tcgtcacgct cgatgcggat ggtcagcatg atcccgcatt
     6181 cgcgccgctc ctgctcggcg cgctcgacaa tgccgatatc gtgataggca cgcgcgagat
     6241 cgggttgccg tcggtgccgc cgcatcgccg catcgcgaat ttcgtgtcaa ctgccgcaac
     6301 gcgcgcggtt acgcggttgc agctgactga cagccagtcc ggctttcgtg cattccgtcc
     6361 tgaagtggtt gccgcaatcg aagcacaggg tgaccggtac gagtacgaga ccgatttcat
     6421 cgtacgcgcg tcgcatcgcg gttaccgcat caccgaagta tcggtgccga ccatatacgg
     6481 gccgccaagc cactttcgcg agctggtcga cagctggcgc gtcgcgcgcg tcctgtggag
     6541 tcatcgcgcc gcggtatttc gttcatgatt gcattcaaca aatgacaggc cagtgaagat
     6601 cctttgcagc aatgacgacg gcgtgttcgc cgccggactc gatgtactcg ttcgtgcagc
     6661 gtctcagctt ggagacgtta ccgtggtagc accggatcgc gagcagagcg caacaagtca
     6721 ttcgctgacg atgcatcgtc cactgcgtcc tgttcatctc ccggacggac gatatcaggt
     6781 cgacggcact ccgaccgatt gcgtaatgct tgcgatcgaa ggattgatgc ccgagcgacc
     6841 ggactgggtg ttgagtggaa tcaatcacgg catgaacatg ggcgaggacg tgttgtattc
     6901 cggcaccgtc gctgcagcca tggaaggcct cgtgcttggc gttccgtcga tcgccctgtc
     6961 gttcgcaggc ggagagatgc ggtccgagtc cgagcagctc gagcgacacc tgcccgccgt
     7021 cgcggatctc ctgcgcgagc tcacgtcgct cgatgtgccg agcacgacac tgttcaacgt
     7081 gaaccttccg cccgtgtttg gcactgacgt caagggcgtg aaacttacgc ggctcggacg
     7141 gcgtcaatac acgaattcga tccgcccgat gagcgatccg tggggacggc cgctctactg
     7201 gatcggtgcc ggctccatgt cgtggaccgg cggcgaggat tcggactacc gtgccgttga
     7261 agaaggctac atatcagtca ctccacttca cctcgacctg accaatggcc cgatgatcga
     7321 ttccgcggag agttggtggc gccggtagcc gagaccgaat acctcggcgc gcgacgtcat
     7381 ctcgtgcagc ttcttcagga gcagggaatt cgcgacctgt cggtcctgca cgcaatcgac
     7441 gaagtgccac ggcacaggtt cgtcccgact ggcgtgcggc atcgcgccta cgaggactcg
     7501 tcgctgccga tcggaagcgg gcagaccata tcgcagccga gtattcacgc gcggtatctg
     7561 gaactgctgc acctgaccgg agaggaacgc gttctcgaga ttggcacggg atccggctac
     7621 cagaccgcgc tcctcgcaag aatggtcgcg caggtttttt cggtggagcg catcggcgcg
     7681 ctcctcgacc gcgctcgtga cgttctgggc gagatcggcg tccgcaacgt atccttcctg
     7741 ttgggagacg ggacgctggg ctggcggcag tatggtcctt acgacgcgat tctggtaagc
     7801 gccgccgcgc caactgttcc gcccgcgtac atggagcagc tcgcagatgg gggtcgtctt
     7861 ctgatccccc tgggcgagcg agaggagcag atcctcaacg tgataactcg gcgcggcgac
     7921 gcgctggagc aggtggaagc gggccctgtg cggttcgtcc ccctgctggg caaagagagt
     7981 tgggagagtt aacttggccg gaatgcttcc accatttgtg ccgcctgcgg cgcgcgtctc
     8041 gagcgagacg ctacctctga tcacggaatt cgtggtcgat cgtgtcgaac actcgttcga
     8101 aagttcgttc agtgtttccg gcgaatcggg cggggcggtc gcgacggcaa cgctgccatc
     8161 gatcgacgaa tttctccggg atgagccgga atcggcccct gatgccgatc atgaattcat
     8221 gcagcgtact tcgcgcagtc cctgggggac ctacgaggcc cagcatgaaa tcagcggtgc
     8281 ccccggagcc ccgttgccgg ctacaccggc agccgccctc gagcctgacc tgcttcccat
     8341 cgaggatcat cgcgcgccgc cgtccggctc cgaggacgcg atcgtgaacg aggtggccga
     8401 gccagctgac gcatgggctg cgacggctgg cggaaacgtg caggaagcga gcgcggatac
     8461 ggataccaag caagcggagc cagctgccgc agaggccgtt gtttcttcgc ccgcggcatc
     8521 ggaggtctgg gtctccgagg agcgcgacgc attcgactgg cacgcagttg ccaatcttgc
     8581 agtcccgccg gccgaggagc agcgtgccgc cgaggagtgg tcttcgaccg agtgggacag
     8641 atccagcggc tcgatgcagg accacatcgc ggcgcagttg gcgcaggtct cgcggcgtgt
     8701 gcgttccggc gagctggagg tgcgtggcag caagcagatg ggccccgagg ctgcgctggt
     8761 cgcggcgctc gcggcgttgc tgtcggagca gggcaggaag taacggcagg gccgctcctc
     8821 gcggcttgca ggggtgactt tgacgtaggg tgactcaggg cgctacgccg cttttcatag
     8881 gctcagcgca tcttgccccg atgcgcactt gcccactcgg cgcc
//
LOCUS       DATIMD010000542         4222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3972644, whole genome shotgun sequence.
ACCESSION   DATIMD010000542 DATIMD010000000
VERSION     DATIMD010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4222
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3972644"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2795)
                     /locus_tag="VLI40_12155"
     CDS             complement(<1..2795)
                     /locus_tag="VLI40_12155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSU97978.1"
                     /translation="MFISDFAIKRPIVTVVIMVALVIFGLFSAFNTDVDELPDIQQPI
                     VFVAVPYPGASPDQVEREVVDRMEEAFQGLNGIDQITSTSTDGFAQIIVQFVYSKPTD
                     EAAQDVRDAISGIRDKLPVEMKEPIIKKFDPSDQPIVSLTLSSNTLKPNELTILADPD
                     ITRQLQGLSGVAQVTLSGGVDREIAVDVVPARLNAAKVSVSDVVNALNAQNLAVPVGM
                     INGSLEERSIRLRGRIENARDFGQLVVAQRGGQVIRLADVANVYDGSAEQRSLALFNG
                     VEGIGIDITKSKGTSTTRVSDEINERVKEIRKTLPAGVKLDVVRDAGPRVTDSVRNVE
                     EALVEGAILTVIVVFLFLNSWRSTVITGLALPVSAISAFIAVHAFGFTLNTMSLLGLS
                     LAIGILIDDAIVVRENIVRHIEMGEDHFKAAHTGTDEIGLAVTATTLSIMAVFVPIAF
                     MSGISGQWFRPFALTIACAVLVSLFVSFSLDPMLSAYWPDPAIEAHEHRNWISRKLEI
                     FNNWFDRQADNYKNVIAWALDHRADMVAISIGVFFASILIPAKGLYAALTLLAGVLLI
                     VWLMSFNYPKSGWGTVLKSGIAIGVFVGSLIFGLTLPEPGWAKLGGGFIPDSDNSELN
                     VSVETPPGSNIDYTHIKAEEIGRIIRTHKEVAYTYTTVGTATGSGEVDVGSIYVKLVP
                     KKDRSLSQGDLSDIIRGEISHVAGVTAYTFNSSFAGNQKQIQVQIRGNDAAQLNAVAE
                     QMEVEARKVPGAADVGLSTKGLKPELDVQLNRGLAGTLGITVGQLAQALRPAFAGVQA
                     GSWVDPTGKTRDVTVRLPAASRQNVSDLRQLPIAVPSGGTSGGSSTSGGSSTGTATPI
                     NSGPQTIPLGQIATVRVTTGPAQIDHLDEDKVVTVGVNPQGRPLSEVSADVNRAIAKV
                     PLPPGVHLSQGGQVKDQ"
     gene            complement(2806..4089)
                     /locus_tag="VLI40_12160"
     CDS             complement(2806..4089)
                     /locus_tag="VLI40_12160"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSU97979.1"
                     /translation="MRRTHIYLPLALATVTLATGCKRKTAEAADTVQQLVVGTENIAI
                     ARQGSVTNGPAISGSLDAELNATVRAQIAGSIISTDADVGQTVKKGQLLGRIDASGLQ
                     DAYLSAKSAVSSAEATAAVAQRNLQRSQTLLQAGAIAQRDLETAQTQAASAQAALEDA
                     KSRLATAQKNFDNTRITAPFDGIVSQKSVSPGDVVQPGGALFTVVDPSTMRLVAAVPS
                     DQVSMLRVGTDVTFTVTGYLGQEFHGKVTRVSPAVDPTTRQVQIIASIPNKSHTLITG
                     LYADGRISSRTQEGIVVPQSAVDTRMQRPAVVKIKDGKVTRVDVTLGMRDPTSETVQI
                     TNGVAVGDTLLVAAAQGITPGTPVRVQPPPSDQSAPQAGVGGPATAGGSNNVLNNGTT
                     GTNGNTNNGSGNGTPNSTPSGTPNSTPNSTPNSGR"
BASE COUNT          756 a         1332 c         1272 g          862 t
ORIGIN      
        1 ttctgatcct tcacctgtcc accctgtgac aggtgcacac cgggcggcag cggaaccttc
       61 gcgatcgcgc gattcacgtc agccgagacc tcgctcaacg gacgaccctg cggattcaca
      121 ccgacggtga cgaccttgtc ctcgtccaga tggtcgatct gcgccggacc ggtcgtcaca
      181 cgcacggtcg cgatctgacc gagtggaatc gtctgcggcc cggagttgat cggagtcgcg
      241 gtaccggtgg aagacccgcc cgatgtggag gatccgcccg acgtaccacc ggacggcacc
      301 gcgatcggca actgtcgcag atccgaaacg ttctgccgcg atgcagctgg aagacgaacc
      361 gtgacatcgc gcgtctttcc tgttggatcc acccagcttc ccgcctgcac gccggcaaac
      421 gccggccgca gcgcctgcgc gagctgcccg acggtgatgc cgagcgttcc ggcaaggccg
      481 cgattcagct gcacgtcgag ctccggcttg agacccttgg tcgacagtcc gacgtcggct
      541 gcgccgggaa ccttgcgcgc ttcaacttcc atctgctccg ccacagcatt caactgcgcc
      601 gcgtcattgc cgcgaatctg aacctgaatc tgtttctgat ttccggcgaa gctgctgttg
      661 aaggtgtacg cggtaacacc cgcgacgtga gagatctcgc cacggattat gtcactcaga
      721 tcgccttgtg aaagcgatct gtcctttttc ggcacgagct ttacgtagat gcttccgaca
      781 tcgacttcgc ccgagcctgt cgccgtgccg acggttgtat atgtataggc gacttccttg
      841 tgcgtgcgga tgatgcgacc gatctcttct gccttgatgt gtgtgtaatc gatgttcgat
      901 cccggcggtg tctctaccga gacgttcaac tcggagttgt ccgaatcagg gatgaaccca
      961 ccgccgagct tggcccagcc gggctccggc aacgtgagac cgaagatcag cgagccgacg
     1021 aatacaccga tggcgatgcc gctcttgagg acggtccccc agcctgattt cggatagttg
     1081 aacgacatga gccacacgat cagcagtaca cccgcgagca gcgtgagcgc ggcgtacagg
     1141 cctttcgcag ggatcagaat gctcgcgaag aacacaccga tcgagatcgc gaccatgtcc
     1201 gcgcggtggt ccagtgccca tgcgatcacg ttcttgtagt tgtccgcctg tctgtcgaac
     1261 cagttgttga atatctccag cttgcgcgag atccagttgc gatgctcgtg cgcctcgatc
     1321 gcgggatcgg gccagtacgc cgagagcatc ggatcgagcg agaaggagac gaagagcgag
     1381 acgagaaccg cgcacgcgat cgtcagcgcg aacggccgga accactgccc cgatattccg
     1441 ctcatgaacg cgataggcac gaataccgcc atgatcgaca gcgtcgtcgc ggttacggcc
     1501 agcccgattt catcggtacc cgtatgcgcg gccttgaagt ggtcctcgcc catctcgatg
     1561 tgccgcacga tgttttctcg cacgactatc gcatcgtcga tcagaattcc gatcgcgagc
     1621 gacaggccga ggagcgacat cgtgttgagc gtgaatccga acgcatgtac agcgatgaac
     1681 gccgagatcg cggagaccgg cagcgccagt cccgtgatca ccgtcgagcg ccacgagttg
     1741 aggaagagga acacgacgat caccgtcagg atcgcgcctt ccacgagtgc ttcctcgaca
     1801 ttgcgcacag aatccgtcac gcgcggacca gcatcgcgca cgacgtccag cttcacgccg
     1861 gcgggcagcg tctttcgtat ttccttgaca cgctcgttga tctcatcgct cacgcgcgtc
     1921 gtgctggttc ccttcgactt ggtgatgtcg atgccgatgc cttcgactcc gttgaagagc
     1981 gcgagcgagc gctgttccgc cgatccgtcg tacacgttcg ccacatccgc aaggcgaatc
     2041 acctgaccgc cgcgctgcgc gacgacgagc tggccgaaat cgcgcgcgtt ctcgatgcgg
     2101 ccgcgcaaac ggatcgagcg ctcctccagg gatccgttga tcatgcctac cggcaccgcg
     2161 agattctgcg cgttaagtgc gttgacgacg tccgacacac tcaccttcgc ggcgttgagg
     2221 cgcgcgggaa ccacatcgac cgcgatctcg cgatccacgc cgcccgacaa cgtcacctgc
     2281 gccacgcctg acaacccctg cagctgacga gtgatgtcag gatccgccag gatcgtcagc
     2341 tcattgggct tgagcgtgtt ggatgaaagc gtgagtgata cgatcggctg atcggacggg
     2401 tcgaacttct tgatgatcgg ctccttcatc tcgaccggca gcttgtcgcg aattccggag
     2461 attgcgtcgc gcacatcctg agccgcctcg tcggtcggct tggagtacac gaactgcacg
     2521 atgatctgcg cgaagccgtc ggtggaggtc gacgtgatct gatcgatacc gttgagaccc
     2581 tggaacgcct cttccattcg atccaccact tcgcgctcga cctgatccgg cgatgcgccg
     2641 ggatacggaa ctgcgacgaa cacgatcggt tgctgaatgt ccggcagctc atcaacgtcc
     2701 gtattgaacg cggagaacag cccgaagatc acgagcgcga ccattatcac gacagtgacg
     2761 atggggcgct tgatcgcgaa atctgagatg aacatcgtga agcctctagc gaccgctgtt
     2821 tggcgtactg tttggcgtac tgtttggtgt accgcttgga gtgctgttcg gcgtgccgtt
     2881 gccggaaccg ttgttcgtgt tcccgttggt gccggtagtg ccgttgttca aaacattatt
     2941 ggagccgccg gcggtcgcgg gtccgccaac accggcctgc ggtgcgctct gatccgacgg
     3001 cggtggctgc acgcgtaccg gcgtaccggg cgtgatgccc tgcgcagccg cgaccagcag
     3061 cgtgtcgccg accgcgactc cgttcgttat ctgcacggtc tcgctcgtcg gatcgcgcat
     3121 gccgagcgtg acatcgacgc gggtgacctt gccatccttg atcttcacaa ccgcgggacg
     3181 ctgcatgcgc gtatcgactg ccgactgcgg aacaactatc ccttcctgcg ttcggctcga
     3241 gatgcggcca tcggcataga gtccggtgat gagcgtgtgg ctcttgttcg gaatcgaagc
     3301 gatgatctgg acctgacgcg tggtcggatc gacagcggga ctcacgcgcg tcaccttgcc
     3361 gtgaaactcc tggccgaggt atcccgtcac ggtgaacgtc acgtcggtac cgacgcgaag
     3421 catcgatacc tgatccgatg gaaccgctgc gacgagtcgc atcgtcgacg gatccacgac
     3481 ggtgaacagt gcaccgcccg gctgcaccac atcgccgggg ctcacgctct tctggctcac
     3541 gatgccgtcg aacggagccg tgatgcgcgt gttgtcgaaa ttcttctgcg cagttgcgag
     3601 ccgcgacttt gcatcttcga gcgcggcctg agcactcgcc gcctgggtct gcgcggtctc
     3661 gagatcgcgc tgagcgatcg cgccggcctg cagcagcgtc tgactgcgct gcagattgcg
     3721 ttgcgcaacc gcggccgtcg cttccgccga cgatacagcc gacttggcgc tcagatatgc
     3781 atcctgcagg cccgatgcat cgatacgacc gagcagttgg cccttcttga cggtctgtcc
     3841 gacatctgca tcagtcgaga tgatcgagcc cgcgatctgc gcgcgtacgg tcgcattcag
     3901 ctcggcgtcg agcgaccccg agatcgcagg tccattcgtc accgatccct gccgcgctat
     3961 cgcgatgttc tcggttccta ccaccagctg ctgaactgta tcggcggctt ccgccgtctt
     4021 gcgcttgcag cccgtcgcga gtgtgacggt tgcgagggca agtgggagat atatgtgagt
     4081 acgtcgcatt tatggattga tccctgattg tccagtcggc gatgtgccgg ccgctgatgg
     4141 tgtgctctga ccgggtgctc ccgccggttg cgtctgcgct tgtgtctgtt gttgcacctg
     4201 caattgttgc tgctgctgtt gc
//
LOCUS       DATIMD010000543         6071 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5137872, whole genome shotgun sequence.
ACCESSION   DATIMD010000543 DATIMD010000000
VERSION     DATIMD010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6071
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5137872"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..451)
                     /locus_tag="VLI40_12165"
     CDS             complement(<1..451)
                     /locus_tag="VLI40_12165"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HSU97980.1"
                     /translation="MLDHRTTEQRNPRTANIDLASAGEIVALMNREDATIAGVVAGQS
                     EAIARAVDTAASTFRAGGRLFYVGAGTSGRLGVLDASECPPTFGTDPEMVQGIIAGGA
                     PALTRSQEGAEDSPATGAKEMDTRDVGPLDFVVGIAASGTTPFVHGAI"
     gene            complement(555..1427)
                     /locus_tag="VLI40_12170"
     CDS             complement(555..1427)
                     /locus_tag="VLI40_12170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97981.1"
                     /translation="MSKYIQRARAFVAVPTVLVLVAVAACNGEKKNDTLAQDTTLNRD
                     MQLANADTAATPALKDVPAAKTPAPAPSATATRPRTTTPAKPAPTKSTTPTRSTTASG
                     NTVTRTPGAAETPLGTIAAGTSIPLTSNSRICTNTNHVGETVTATVANSVTGSNGATI
                     PAGAKASLEITQLKRSENINDKIQMGFRVKSISFGGHTYPVTASVSSAQVDRVKNQPT
                     GKDVQKVGTGAAVGAVVGQILGHSTKSTIIGGAVGAAAGAGAAATTANYEGCVPTGGN
                     ITIALQDPIQVHTS"
     gene            1493..3265
                     /locus_tag="VLI40_12175"
     CDS             1493..3265
                     /locus_tag="VLI40_12175"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU97982.1"
                     /translation="MLPNLRRLIPYFRPYKTQLVTGLAFVVLAAGITSVIPWILQRAI
                     DAIRAGVAVRSVWLLAGALVGTALVGGALRYGMREWMNGLSRWVEYDLRNDLFEHLEA
                     LDASYYTRTRTGDIMARLTNDLSAVRMTAGPAIMYLTNTVFGGIFALYFMSRIDVRLT
                     LLALCPMILLPVISVRLAKLIHSRFESVQEHFSSLTTHAQENLTGVRIVRAYRQEDSE
                     IAHFGELNEEYLTRNMALVRLWGVMHPLFSMLAGIGAVVVLGAGGVLALRGVISIGAF
                     VAFGMYLTMLTWPLIALGWVINLFQRGDASMGRLLQIMDEKPRIVTHDPVLHLPPSTD
                     GRSIEFRNVSFHFPVTGTNAPRWVLDDVSFVIPSGATAGIVGATGSGKSALIDLIARV
                     YDPQRGQVLIDGVPIERVPLDELRREIGYVPQESLLFSDTIAANLAYGLGSDGDPEAW
                     RDAAKIAQLDEAIVAFPDGYETVLGERGINLSGGQKQRAALARALARRPAIVLLDDAL
                     SAVDTHTEAQILAGLRNALARRTAVIASHRASALRDAAMILVLDDGRIVERGTHADLL
                     AAEGRYWALLRRQQLVEEVETAVG"
     gene            3305..4120
                     /locus_tag="VLI40_12180"
     CDS             3305..4120
                     /locus_tag="VLI40_12180"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSU97983.1"
                     /translation="MTDPAAAVDIRAAALEAELQQARRELAELRSRDALKTQFLSNIS
                     HDLRTPLTAIITHAEILRDGILGPMSPRQLESVNGIISGGRQLLDMVGEILTYAKATA
                     NRLRLVSTEFDLGEVVRQASAINEAIARRRNLSVATEIPDSLPTLTADREKLTHVLNN
                     LIGNAIDFTPDGGHVWVRAWYGEDDDHAAHFVEVGDTGIGIAPEHQQLVFDEFAQVDS
                     SASRLHHGTGLGLTIARRLVELHGGRLWVDSKPGEGARFTLTIPSAPHASARR"
     gene            4092..4451
                     /locus_tag="VLI40_12185"
     CDS             4092..4451
                     /locus_tag="VLI40_12185"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU97984.1"
                     /translation="MPRTRLLVVEDSAIVASALRLLFEESGYDVDVASTVKAAIATAT
                     ENTPDVMLLDLTLPDGDGLTILQRLREQGCAPHGTIALTGHDDDELRERCIDAGCVDV
                     LLKPVPIARLVALVQSL"
     gene            complement(4402..4797)
                     /locus_tag="VLI40_12190"
     CDS             complement(4402..4797)
                     /locus_tag="VLI40_12190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97985.1"
                     /translation="MNETTERFFREISDRVGYDQVAELYLFPVIRQSGVEAAVAVVAA
                     YPDPSVESLEPRHVVYSASYRSTVKGTDRGKWSVEIVAEADAPLVTIEEVVRGVVQRS
                     GEQFQPEQFTGAEFRAIVPAPQAAQSEPA"
     gene            complement(4863..5384)
                     /locus_tag="VLI40_12195"
     CDS             complement(4863..5384)
                     /locus_tag="VLI40_12195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97986.1"
                     /translation="MMVVAPPVFGQTFFELGAGWSYLAAPVTPQIGTYSRAVNGRVSI
                     GRQVAPRVRVRVDVMGLHFDQSVQYFPPCAAPGCTHPYYKTQSNDIVGVIGNGLLDVD
                     RRGILYLIGGAGAYGAFVQSTERHLGVSAGAGIALPVGTDLRVFVEATGHHLFGRTTG
                     PSRFVPITIGLRY"
     gene            complement(5863..>6071)
                     /locus_tag="VLI40_12200"
     CDS             complement(5863..>6071)
                     /locus_tag="VLI40_12200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97987.1"
                     /translation="IRAIPSNMRIALLRGSGDRRKGIDSALEVAGKPRLRYSVIPFAS
                     HSLKSLTIAGPMAQRAVGWIVSGD"
BASE COUNT         1088 a         1864 c         1947 g         1172 t
ORIGIN      
        1 ggatcgcgcc gtgtacgaac ggtgtggttc ccgatgccgc gatgccgacg acaaagtcga
       61 gcgggccgac gtcccgcgtg tccatctcct tcgcacctgt cgcgggactg tcttcggcgc
      121 cctcctgtga gcgggtaagc gccggcgcgc cgcctgcgat gatcccctgc accatctcgg
      181 gatcggttcc aaatgtcggg ggacactcgc tcgcatccag tacgccgagg cggccggagg
      241 tgccggcgcc gacgtagaag agacgaccgc cagcgcggaa ggtcgatgcg gcggtatcta
      301 ctgcgcgcgc gattgcttcg ctctggcccg ccaccacccc cgcgatcgtg gcgtcttcac
      361 ggttcatcag cgcaactatc tctcccgcag aggcgagatc gatgttcgcg gttcgggggt
      421 tgcgctgctc ggttgttctg tggtctagca cgacgggaaa gttaccgcgc cgcgaaggct
      481 ggaaccatgc gtgaaaaaag ccccgctcgg atgagcgggg cttttcgtgg gctgacacat
      541 ggagcgggtg tggatcagct cgtgtgaacc tgaatcgggt cctggagcgc gatggtgatg
      601 ttgccgcccg tcggaacgca gccctcgtaa ttggctgtcg tggcggccgc tcctgcgcca
      661 gccgccgcgc cgaccgcgcc accgatgatg gtggacttgg tgctgtgacc gaggatctgt
      721 ccgaccacgg cgcccaccgc ggcgcccgtt ccgactttct gcacgtcctt accggtcggc
      781 tggttcttca cgcgatcgac ctgcgcggag ctgaccgacg cggtaaccgg ataggtgtgt
      841 ccgccgaagc tgatcgactt cacacgaaag cccatctgga tcttgtcgtt tatgttctcg
      901 ctacgcttga gctgcgtgat ctcgagtgac gccttggcgc cagcagggat cgtagcgccg
      961 ttggaaccgg tgacggaatt cgcaaccgtt gccgtgacgg tctcgccaac gtgattcgtg
     1021 ttggtgcaga tacgcgaatt ggatgtgagc ggaatcgaag tcccggcggc gatcgtgccg
     1081 agcggcgttt ccgcagcgcc aggtgtccgc gttaccgtat ttccactcgc cgtggtggac
     1141 ctggttggag tggtcgactt cgtcggcgcc ggctttgctg gcgtcgtggt acgcggacgg
     1201 gtcgcggttg ccgacggagc tggagcgggc gtcttggctg ccggcacgtc cttcagcgcc
     1261 ggcgtcgccg ccgtgtccgc attggcaagc tgcatgtcgc gattgagcgt cgtgtcctgt
     1321 gccagcgtgt cgttcttttt ctcaccgttg caggcggcca cagcgaccag aaccagcacc
     1381 gttggaacgg cgacgaacgc acgtgcacgt tggatatatt ttgacatggg gctcctctaa
     1441 gaatggcttc gtcaggatca gtcccgttta acgcgcaatc ggtgtgccac ctgtgcttcc
     1501 aaatctccgc cgcctgatcc cgtacttccg gccgtacaag acgcaactcg ttacagggct
     1561 tgcgtttgtg gttctggccg ctggcatcac atctgtgatt ccatggattt tgcagcgagc
     1621 gattgacgcc atccgtgcgg gcgttgccgt ccgctcggtc tggctcctgg caggggccct
     1681 ggtcggcacg gcgctggtcg ggggcgcgct gcggtacggc atgcgtgagt ggatgaacgg
     1741 cctcagcagg tgggttgaat acgacctccg gaacgacctc ttcgagcacc tcgaagcgct
     1801 ggatgcgtca tactacaccc gcacgcgaac gggtgacata atggcccgcc tcaccaacga
     1861 tctgagcgcg gtgcgcatga cggccggacc ggcaatcatg tacctcacca atacggtatt
     1921 cggcggaatc ttcgcgctgt acttcatgtc gcgcatcgac gtgcgactca cgctgctggc
     1981 gctgtgtccg atgattctcc tcccggtcat cagtgtgcga ctggcgaagc tcatccacag
     2041 tcgattcgag tcggtgcagg aacacttctc gtcgctcacg acgcatgccc aggagaacct
     2101 gacaggcgtg cggatagtcc gcgcgtatcg ccaggaagat tccgagatcg cgcacttcgg
     2161 tgagctgaac gaggaatatc tcacgcgcaa catggcgctc gtccggctgt ggggcgtcat
     2221 gcatccgctg ttctcgatgc tcgctggaat tggcgcggtg gtggtcctcg gcgcaggcgg
     2281 tgtacttgca ttgcgcggcg tcatttccat cggcgcattc gtcgcgttcg gcatgtacct
     2341 cactatgctc acgtggccgc tcatcgcgct cggctgggtc atcaatctgt tccagcgcgg
     2401 cgatgcatcg atgggccgcc tgcttcagat aatggatgaa aagccccgca tcgtgactca
     2461 cgatccggtg ctgcatcttc cgccctcgac cgacgggaga tcgatcgagt ttcggaacgt
     2521 gagcttccac tttccggtaa cgggcacaaa cgcgccccgc tgggtgctgg acgacgtgag
     2581 cttcgtcata ccgtccggtg cgacggcagg aatcgtcggg gcgaccggaa gcggcaagag
     2641 cgcactgatc gaccttatcg cccgggtgta cgatccgcag cgcggtcagg tcctgatcga
     2701 tggtgtcccg atcgagcgcg tgccgctgga tgagctgcgt cgcgagatcg gctacgtccc
     2761 gcaggaaagc ctgctgttca gtgatactat cgccgccaac ctggcgtatg gacttggctc
     2821 ggatggagat cccgaagcgt ggcgcgacgc cgcgaagatt gcgcagctgg acgaggcgat
     2881 cgtcgccttc ccggacggat acgagacggt actcggcgag cgtggcatca atctgtccgg
     2941 cgggcagaag cagcgcgctg ccctggcacg cgcccttgcc aggcggccgg cgatagtgct
     3001 gctcgacgac gccctctccg cagtcgacac gcacactgag gcgcagatac tggccggcct
     3061 gcgcaacgcc cttgcgcgcc gaaccgcagt catcgcgtcg caccgggcca gcgcgctgcg
     3121 tgatgcggcg atgattctgg tgctggatga cggccggatc gtggagcgcg gcacccatgc
     3181 cgacctgctg gccgcggaag gccgttactg ggctttgctt cgccggcagc agctggtgga
     3241 agaggtcgaa acagcggttg gttgaggcat ccgcgccggc gatgtacctt tccggcatat
     3301 gcacgtgaca gaccccgcgg cagctgtcga catccgtgcc gcggcgctcg aggccgagct
     3361 gcaacaggcc cgccgagaac tcgccgagct gcgctcgcgc gacgctctca agacccagtt
     3421 tttatccaac atctcgcacg atctgcgcac gccgcttacg gcgatcataa cgcacgcgga
     3481 gatactgcgg gacggaatac ttggaccgat gtcgccgcgc cagctcgaaa gcgtgaatgg
     3541 aatcatctcc ggtggacgac aactgctgga catggtcggc gagattctca cctacgcgaa
     3601 ggcgacggca aatcggttgc ggctcgtgtc gaccgagttc gacctcggag aagtggtgcg
     3661 gcaggcgagc gcgatcaacg aggcgatcgc gcggcggcgg aatctctccg ttgcgacgga
     3721 gatcccggat tcgctcccaa cgctgaccgc agaccgcgaa aagctcacgc acgtgctcaa
     3781 caatctcatc ggtaacgcga tcgatttcac accggacggc gggcacgtat gggttcgcgc
     3841 gtggtacggc gaggatgacg accacgccgc gcatttcgtg gaagttggtg acaccggaat
     3901 tggaatcgca ccggagcatc agcagctcgt gttcgacgaa ttcgctcagg tcgactcgtc
     3961 agcgtcgcgg cttcaccacg gaacgggact cgggctgacg atcgcgcgac ggctggtgga
     4021 actgcacggc gggcgcctct gggtcgatag caagcccggt gagggtgccc gtttcacact
     4081 cacgattccc agtgccccgc acgcgtctgc tcgtcgttga agacagcgcg atcgtcgcat
     4141 ccgcgttgag actgctgttc gaggaaagcg gctacgatgt ggatgttgcg tcgaccgtga
     4201 aggctgcaat cgcgacagct acggaaaata caccggacgt gatgctgctc gatctcacgc
     4261 taccggatgg cgacggtctg acgattcttc agcggctgcg cgagcagggt tgcgcgccac
     4321 atggcacgat tgcgcttacc ggccacgacg acgacgagct tcgggagcga tgcatcgacg
     4381 ccggttgcgt cgacgtgttg ctcaagccgg ttccgattgc gcggcttgtg gcgctggtac
     4441 aatcgctctg aattccgcgc cggtgaactg ctcgggttga aactgttcgc cacttcgctg
     4501 aacgactcca cgcaccactt cctcaatcgt caccagaggc gcgtctgcct cggcgacgat
     4561 ctcaaccgac cattttccac gatcggttcc cttgacggtg gagcgatagc tggcggagta
     4621 caccacgtgc cgcggctcga gtgactcgac cgaaggatct ggatacgccg cgacgacggc
     4681 aaccgccgcc tcgacgccgg actgccggat tacgggaaat agatacagct ccgcaacctg
     4741 gtcgtaaccg acgcgatctg atatctcgcg gaaaaaacgt tctgtggttt cgttcatgga
     4801 tagaaaggtg gcgtgcgggt acgccggggg caatcacgcc ggcgagagtc gggctgcgag
     4861 gttcagtacc gcaggcctat cgtgatcggc acaaaccgag acggccccgt ggtgcgaccg
     4921 aatagatggt ggccagtcgc ctctacaaaa acgcgcaagt ccgttcccac cggcagcgcg
     4981 attcccgccc ccgctgacac gccaaggtgc cgttccgtgg attggacgaa agcgccgtag
     5041 gctccggccc cgccgatcag gtagaggatt ccgcgccgat cgacatcgag caacccattt
     5101 ccgatgacac cgacgatgtc gttggactgc gtcttgtagt acggatgcgt gcagccgggg
     5161 gcggcacacg gcggaaagta ttgcacactt tgatcgaagt gcagtcccat gacgtcgacc
     5221 cgcacacgta cgcgcggcgc gacctgtcgg cctatggaga ctcgtccgtt cactgcacgg
     5281 ctgtacgtgc caatctgcgg cgttacgggc gccgccaggt aactccatcc ggcgccgagc
     5341 tcgaagaacg tttgaccgaa caccggcggt gcgacaacca tcatgcatcc tgccgcgcag
     5401 gatgtgacaa tgacccgcca cgagaaatgg gatgtgatca aatgtcccaa cagactcgtc
     5461 gcatgcgtga gacgtttacg tgtactcaca tcaatagctc cgtcaacgat agccatccgt
     5521 catcaggtgt ggaccggtac gccgcggtac cgttggcggt gggcagtgca ccatcacgcg
     5581 gtcaggattt cgcaatggaa tgcaagcaaa gcgaactgat cttaccggtt ccgggaagtc
     5641 ccgcgtggcg agcggtgctt ctggtagtgc aggcggcgcg ctttctccga tcgacggcgg
     5701 cgggttcgca taagcgcgta tgccgacaat ttgaccggtt cgacggccaa gccgggtatt
     5761 cgacgaagtg cgaagtgcca agtgatgtca gtgtgcgcct cgtacgtcgc gacgcgaact
     5821 gactgggaag actacgagct tgcccggaac ttccgtaggc tgtcagtcgc cactcacgat
     5881 ccatcccacg gcgcgttgcg ccatcggacc agctatcgtc agcgacttca atgaatggga
     5941 ggcaaacggg atcacggaat acctgagtct cggttttcca gcaacctcga gcgcggagtc
     6001 gatccctttg cgacgatcgc ctgatccgcg gagtagcgcg attcgcatat ttgacgggat
     6061 tgcgcgaatc t
//
LOCUS       DATIMD010000544         1753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5712818, whole genome shotgun sequence.
ACCESSION   DATIMD010000544 DATIMD010000000
VERSION     DATIMD010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1753
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5712818"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            59..>1753
                     /locus_tag="VLI40_12205"
     CDS             59..>1753
                     /locus_tag="VLI40_12205"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSU97988.1"
                     /translation="MQLNNIRPEWNDVAASGGSADAASDSTIQLAADTMPNLRSVNLL
                     TSLVCASAIAASTVHAQKIDSADVLIRGGAVAASAAHARKTDSADVLIRGGTVVDGTG
                     SPGRAADVALRGDRIVFVGNAKAAHIDAARTIDARGLIVAPGFIDSHTHAESDLSSPA
                     RHGNVNYLMQGVTTVMTGNDGSSPLDVGKTLDKWQQQGIGTNAAMFIGEGSVRGHVLG
                     MSDAKPTPAQMDSMRALVARGMDGGALGISTGLYYAPGSYASTEEVIDLSKVAAQHGG
                     IYDTHLRDESSYTVGLIGAVNEAIRIGREAHMRIHISHIKALGTDVWGQSDTVIALID
                     KARADGVDVVACQYPYTASGTSVGASLLPRWAEEGGRDSLLARIADAPTHARLVADMQ
                     NNLRRRGGAAALLITTQRDTGATAGLRGKTLDQAAKAHNLSPIDEALEIVKSGDASVA
                     SFNMKDADIDNFMKQPWVSTCSDGSGGHPRKYGTFPRKLREYVYKRHVLTLPQAIHVS
                     SELTAHTLGLKDRGTLAVGNYADVIVFDPKTVEDKATYEQPTLLAVGMRYVFVNGVP"
BASE COUNT          357 a          553 c          546 g          297 t
ORIGIN      
        1 gacgacattt cgccgttttc cgcggtcggt tgcaaatttt gtcgcctagc gtaaaactgt
       61 gcaactgaac aatattcggc ccgaatggaa cgacgtcgct gcgtccggcg gtagtgcgga
      121 cgcggcgagc gattcaacaa ttcaactcgc ggccgacacc atgccgaacc ttcgctccgt
      181 aaatctgctg acctccctcg tctgcgcgag cgccatcgct gcatcaaccg tacacgctca
      241 gaagatcgac tcggcagacg tactcatacg cggcggcgcc gtcgccgcat cagctgcaca
      301 cgctcggaag actgactccg cggacgtact gatacgcggc ggcacggtcg tggatggaac
      361 cggcagcccg ggccgagcgg cggacgtcgc gcttcgcggt gatcgcatcg tttttgttgg
      421 caatgcgaag gcagcgcaca tcgatgcggc tcgtaccatc gacgccagag gcctgatagt
      481 cgcgcccggc ttcatcgact cgcacactca tgccgagtcc gatctgtcga gccccgcgag
      541 gcacggcaac gtcaactacc tcatgcaggg cgtcacgacc gtcatgaccg gcaacgacgg
      601 atccagcccg ctcgacgtcg gcaagaccct cgacaagtgg cagcagcagg ggatcggtac
      661 caacgccgcc atgttcatag gtgagggatc ggtgcgcggg cacgtgcttg gaatgtccga
      721 cgccaagccg acgcccgctc agatggacag catgcgcgcg ctggttgcgc gtggcatgga
      781 cggcggcgcg cttggcatct cgaccggtct ttactacgca cccggcagct acgcctcgac
      841 ggaggaagtg atcgatcttt ccaaagttgc ggcgcagcat ggcggcatct acgacacaca
      901 tctccgcgac gagagctcct atacagtcgg actcatcggt gcggtgaacg aggcgatccg
      961 catcgggcgc gaggcacaca tgcgcatcca catctcgcac atcaaggcgc tcggcaccga
     1021 cgtatggggc cagagcgata ctgtgatcgc gctcatcgac aaggcgcgcg cggacggcgt
     1081 cgacgtggtc gcgtgtcagt acccatacac cgcgtccggc accagcgtcg gcgcatcact
     1141 tctaccgcgc tgggcggagg aaggcggacg tgactcgctg ctcgcgcgaa tcgcagatgc
     1201 gccgacccac gcgcgtcttg ttgcagacat gcagaacaat ctgcggcggc gtggcggggc
     1261 ggccgctctg ctgatcacca ctcagcgtga taccggtgcg accgcgggtc tgcgtggcaa
     1321 gactctggac caggcagcga aggcccacaa tctttcaccg atcgatgagg cgctcgagat
     1381 agtgaagagc ggcgacgcga gcgtcgcgtc gttcaatatg aaggacgccg atatcgacaa
     1441 cttcatgaag cagccgtggg tgagcacctg ctccgacgga tcgggcggtc atccgcgaaa
     1501 gtacggcaca tttccgagaa agctgcgcga gtacgtctac aagcggcatg ttctcacgct
     1561 cccgcaggca atacacgtga gcagcgagct tacggcgcac acgcttggac tcaaggaccg
     1621 cggaacgctg gcagtcggaa attacgccga cgtgatagtc ttcgatccaa agaccgtcga
     1681 ggacaaggct acgtacgaac agccgacgct tctggccgtg ggcatgcgct acgtattcgt
     1741 gaacggtgtg cct
//
LOCUS       DATIMD010000545         5629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3975030, whole genome shotgun sequence.
ACCESSION   DATIMD010000545 DATIMD010000000
VERSION     DATIMD010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5629
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3975030"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(114..1088)
                     /locus_tag="VLI40_12210"
     CDS             complement(114..1088)
                     /locus_tag="VLI40_12210"
                     /inference="COORDINATES: protein motif:HMM:NF016032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-cysteine ligase family protein"
                     /protein_id="HSU97989.1"
                     /translation="MGAELELIPVRNRSHRRVLIDADGEGPGSADIIRDAGATRGWRE
                     ETDAYGAPSWAMPDGGHLFYEPGGQIEISSPVFPSAAALEKFLREAVRAIRDSAQAAD
                     VTFLTSGVDPYNSLETVPLQLTAPRYEAMTRYFDSIGASGARMMRQTASLQVSVELGS
                     HPLDRWKLLNALAPYLIASYANSPNYEGHHTGYASYRARLWQTLDSTRTGLPFDESDP
                     IGAYTRFAEHAGRILDDDAAHLTTLFPEIRPRGYFEIRSIDSMEPDRVGEALRFISRL
                     VHDEDVAAEAQEIVGNPDASLLPRAAEFGRADATIDAPLKVLDILAAD"
     gene            complement(1173..2108)
                     /gene="egtD"
                     /locus_tag="VLI40_12215"
     CDS             complement(1173..2108)
                     /gene="egtD"
                     /locus_tag="VLI40_12215"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: protein motif:HMM:NF021530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030745 - dimethylhistidine
                     N-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HSU97990.1"
                     /translation="MTFDRDLMLSDVRAGLAARPRQLPSKYFYDERGSQLFDEITRLP
                     EYYPTSAERALLQHRAPAIISIAHPATLVELGAGSSDKTRLLLDEMLRSSSSDTMYIP
                     VDVSADFLTTSVAQLRDEYPSLTTHPVVADFSAQFALPSHPLPALHAFLGSTIGNFTP
                     ADAVELVASVRERMVVGDFFLLGVDLRKDPRRIERAYNDSRGITAQFNKNILNVINAG
                     LGANFDTSMFDHNAIYNTNEHRVEMRLVSRATQNVSIPGVGDISFATGDAILTEVSYK
                     YDRAAATDLLNRSGLQLSEWFTDEAESFALVLANR"
     gene            complement(2098..3405)
                     /gene="egtB"
                     /locus_tag="VLI40_12220"
     CDS             complement(2098..3405)
                     /gene="egtB"
                     /locus_tag="VLI40_12220"
                     /inference="COORDINATES: protein motif:HMM:TIGR03440.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtB"
                     /protein_id="HSU97991.1"
                     /translation="MNTPDSILRSSICARLTEARERTLLLVAPLSDEDLRVQHDPLMS
                     PILWDLGHIAHFEELWLTRNLSGHIEFSEMPGMYNPFEYPRATRAALPLPSLHSLIQT
                     AAAIRADTLTALESADLQSTHPLLAGGFVYNMVLQHEYQHNETILQTLQLKGGEPYRA
                     PRAITAPLSGSDAFDGMVHVNAGEYLVGTDDRSVAYDNERPQHAVRVNAFEIDAAPVT
                     NAEYARFIADGGYRQLELWSEEGRAWLADSGAQAPKHWTASADGWMTRTMDMVGPVTP
                     DHPVCHVCYYEADAYARWAGKRLPTEQEWEIAASWNPATSSSQRFPWGDAEPTALHAN
                     VDQLFFGTTPIGAFERNVSPLGCYGMIGDVWEWTSSDFTGHPGFVAYPYPEYSEAFFG
                     TDYKVLRGGSWATRAGVIRNTFRNWDYPIRRQIFSGFRCARDV"
     gene            3289..3531
                     /locus_tag="VLI40_12225"
     CDS             3289..3531
                     /locus_tag="VLI40_12225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97992.1"
                     /translation="MLDSEVLIGERRYQKQGTLARLGESGADRASQDGIRRIQHDSAR
                     SDERGGERIEERSEERRCTSPGAWEWARTAWWSIYV"
     gene            3622..5280
                     /locus_tag="VLI40_12230"
     CDS             3622..5280
                     /locus_tag="VLI40_12230"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSU97993.1"
                     /translation="MSQSSGQARVIRFFEQVPLAAAVLVTLVAIGTMIEWYTGMDPMT
                     GFYPGGIVMGPLSCVTFACAAVALAFAAKKDRPFALRVASIVLACIVILIAAIESASW
                     IAGRDLGLDLLMFREQLVRAPWNPPGRMALNTVVGIFIIAAGIITLHIDDRTGRASSH
                     WVGLIGGTIGFLGLVGYAFGVSGLYSVGQYSGMAVSTAACLFVLGLGVVFARRTSGIP
                     KLLVDPGAAGTVARRLIPAAVSVPFLLGWLRLVGEKSGWYDTPFGVSLYVVATVAIFL
                     WLVSWSAHMAYESDRVREELLAGEQRAREAAEGANTAKSNFLAVMSHELRTPLSAIIG
                     YEELLADGITGPVNDAQKHQLGRMKASAQHLLHLIDQILSYSRVDAGREIVQLEDIDA
                     NEVAHDAATLVEPLAREKGLPLEVVPIGYPLAMRTDSGKVRQILVNLLSNAVKFTPSG
                     RVTLVVQHDGAIVRYVVRDTGIGIADEHRDRIFDAFWQVEQPSTRRVGGTGLGLSVTR
                     RLARLLGGDVTVTSKVGEGSAFIVSLPLELPSRAPTGEPTAVVA"
BASE COUNT         1024 a         1638 c         1823 g         1144 t
ORIGIN      
        1 tagtaaggta cgcatcgtcg cccaactcgc cagttggcgc catacaggcc gcattcaggt
       61 aatgcccgcg ggagtatcgc cgcctcagct gcagtgacgc ttacccgacg gtcctagtcc
      121 gcggcgagta tgtcgagcac cttgagtggt gcgtcgatcg tcgcgtcggc ccgtccaaac
      181 tccgcggcgc gtggcagaag gctggcgtcc gggttgccga cgatttcctg ggcttccgct
      241 gccacatctt cgtcgtgcac gagccgtgag atgaaacgca gcgcttcgcc cacgcgatcg
      301 ggctccatgg agtcgatcga acggatctcg aagtagccgc gcggacgtat ctccggaaag
      361 agcgtggtga gatgcgcagc gtcgtcatcg aggattcgac ctgcatgctc ggcgaatcga
      421 gtgtaggcgc cgatcggatc gctctcatcg aacggcagtc ccgttcgcgt actgtcgagc
      481 gtctgccaca gtcgcgcgcg atagctcgcg taaccggtgt gatgtccctc gtaatttggc
      541 gagttggcgt acgaggcgat cagatatgga gcaagcgcat tgagcagctt ccatcgatcg
      601 agcggatgag agcctagctc gacgctgacc tgaagcgatg ccgtctgtcg catcatgcgc
      661 gcaccggacg ctccgatcga atcgaaataa cgcgtcatcg cttcatagcg cggtgccgtc
      721 aactggagtg gaacggtctc gagcgaattg tatggatcga caccgctggt caggaacgtt
      781 acgtcggctg cctgcgcgga gtcacggatg gcgcgcactg cttcgcgcag gaatttttcc
      841 agtgccgcag ccgacggaaa cactggcgag ctgatctcga tctggccgcc aggctcgtag
      901 aacagatggc cgccgtccgg catggcccag ctcggcgcgc catacgcatc ggtctcttcg
      961 cgccagccgc gcgtggctcc cgcgtcgcga attatgtcgg cgctgccagg accctcgcca
     1021 tccgcgtcga taagcacgcg tcggtgcgag cgattgcgga caggtatcag ttcaagctcc
     1081 gcgcccatgg agccatccgg acttgcggaa cgcgacggtt ggaagagaga ctcgaccatg
     1141 gcgcgcatcg atcgcgaatc gtgtggcatc ggtcagcggt tggcgagtac cagtgcgaac
     1201 gattcagcct catcggtgaa ccactcgctc agttgcaatc cgcttctgtt gagaaggtcg
     1261 gttgcggcgg cgcggtcgta cttgtagctc acttcggtaa ggatcgcatc accggtcgca
     1321 aagctgatat ctccgacgcc gggaatcgac acgttctgag ttgctcgcga tacaagacgc
     1381 atctcgacgc ggtgttcgtt cgtattgtat atggcattgt gatcaaacat cgacgtgtcg
     1441 aagttggcgc caaggccggc gttgatgacg ttcaggatgt tcttgttgaa ctgagcggtg
     1501 atgccgcggc tgtcattgta cgcacgctcg atccggcgcg ggtccttgcg cagatccacc
     1561 cccaacagga aaaaatcgcc gaccaccatt cgctcgcgca cgctggctac cagctccacc
     1621 gcatccgcgg gagtgaagtt gccgatggtg cttccaagga acgcatgcag cgccggaagc
     1681 ggatgcgagg ggagcgcgaa ctgcgcggag aagtcggcaa ctacaggatg cgttgtcagc
     1741 gatggatatt cgtcgcgcag ctgcgcgacg gaggttgtca gaaagtccgc gctcacatcg
     1801 accgggatgt acatggtatc ggacgaactg gatctcagca tctcgtcgag tagcaggcgc
     1861 gtcttgtcgg agctgccggc accgagttcc acgagcgttg ccggatgcgc tatggatatg
     1921 atcgccggag cgcgatgctg cagcagtgca cgctcggcgc tggtgggata gtactcgggc
     1981 agtcgtgtta tctcgtcgaa cagctgcgat ccgcgctcgt cgtagaaata cttggatggg
     2041 agctggcgcg gacgcgcggc gagtcccgcg cgaacgtcgc tcagcatcaa atcgcgatca
     2101 aacgtcacgt gcgcagcgaa acccgctgaa gatctggcgg cgaatgggat agtcccagtt
     2161 acggaatgtg ttgcgtatca cgccggcgcg agttgcccat gagcctccgc ggagcacctt
     2221 gtaatctgta ccgaaaaatg cctcggaata ctccggatac ggatacgcga cgaagccggg
     2281 atgtccggtg aaatcgctcg atgtccactc ccatacgtct ccgatcattc cgtagcaacc
     2341 gagcggagat acgttccgct cgaatgcgcc gatcggtgtt gtaccgaaga agagctggtc
     2401 aacgttcgcg tgcagcgcgg taggttcggc atcgccccag ggaaaacgct ggctgctcga
     2461 tgtcgcagga ttccatgacg ctgcgatctc ccattcctgt tcggtgggga ggcgcttgcc
     2521 tgcccagcgc gcgtatgcgt ctgcctcgta atagcaaacg tggcacaccg ggtggtctgg
     2581 tgtaactggt ccgaccatgt ccatcgttcg agtcatccag ccatcggccg acgccgtcca
     2641 gtgcttcggt gcctgagcgc cggaatccgc aagccatgca cgcccttctt cggaccacag
     2701 ttccagctgc cggtatccgc cgtccgcgat gaatcgtgcg tactctgcat tcgtcactgg
     2761 ggcagcatcg atctcgaatg cgttgactcg aaccgcgtgt tgcggccgct cgttgtcgta
     2821 cgcaacagag cgatcgtcgg taccgaccag atactcgccg gcgttgacat gcaccattcc
     2881 gtcgaacgcg tcgctgccgg atagcggcgc agttattgcg cgcggcgcgc gatatggctc
     2941 gccgcctttg agttgcaacg tctggagaat ggtctcgttg tgctgatact cgtgctgcag
     3001 taccatgttg taaacgaagc cgccagccaa cagtggatgg gtcgattgca gatctgccga
     3061 ttcgagcgct gtgagcgtgt cggcgcgaat tgcggccgct gtctggatca acgaatgcag
     3121 agaggggagc ggaagcgccg cacgggtcgc gcgtggatac tcgaacggat tgtacatgcc
     3181 gggcatctcc gaaaattcga tgtgccctga cagattgcgt gtgagccaca gctcttcaaa
     3241 gtgggctatg tggcctaggt cccacaggat ggggctcatc agcggatcat gctggactcg
     3301 gaggtcctca tcggagagcg gcgctaccag aagcagggta cgctcgcgcg cctcggtgag
     3361 tctggcgcag atcgagcttc gcaggatgga atccggcgta ttcagcatga ttcggcgagg
     3421 agcgatgaga ggggcggtga gaggatcgag gagcggagcg aggagcggcg ctgcacttcg
     3481 ccgggagcct gggaatgggc ccggactgcg tggtggagca tctacgtatg ataaccgcgg
     3541 cgtaaaggca ggcgctggcc cggagttgca caccgggacc ccaaagcgca gctttccatc
     3601 ctccgtgtat ccgtcccccg aatgagtcag tcgagcggcc aggcccgcgt aattcggttc
     3661 ttcgagcaag ttcctctcgc ggcagccgtt ctcgtcacgc tcgtggcgat tggtaccatg
     3721 atcgagtggt atacggggat ggatcccatg acggggttct accctggcgg aattgtgatg
     3781 gggccgctca gctgcgtcac gttcgcgtgc gccgcagttg cgttggcatt cgccgcaaag
     3841 aaggaccggc cgttcgcact gcgcgtcgcg tccatcgtcc tggcgtgcat cgtgattctg
     3901 atcgcggcca tcgagtccgc gtcgtggatc gccggacgcg atcttggcct ggacctgctg
     3961 atgtttcgcg aacagctggt ccgtgcgcca tggaatcccc caggtcgcat ggcgctcaac
     4021 actgtggttg gcatcttcat aatcgccgca ggcatcataa cgcttcacat cgacgatcgt
     4081 accgggcgcg cgtcctcgca ctgggttggg ttgatcggtg gcacaatcgg tttcctcgga
     4141 cttgtcggtt acgcgtttgg tgtaagcggc ctgtattccg tggggcagta ctccggaatg
     4201 gctgtttcca cggctgcctg tctgttcgtg ctgggacttg gagtggtatt cgctcggcgt
     4261 acgagcggta ttccgaagct tctggtcgat cccggggccg ctggaactgt tgctcgccgt
     4321 ctcatcccag ccgctgtctc cgtcccattt ctgctgggct ggctgcggct cgttggcgag
     4381 aagagcggct ggtacgacac gccgttcggc gtttcactgt acgtggtcgc gactgtggcg
     4441 atcttcctgt ggctggtgag ctggtcggcg cacatggcgt atgagagcga ccgcgttcgc
     4501 gaggagcttc tggccggcga gcagcgagcg cgagaggccg ccgaaggtgc gaacacggcg
     4561 aagagcaatt ttctcgcagt gatgtcgcac gagcttcgaa cgccgctctc ggcgatcatc
     4621 gggtatgagg aactcctcgc cgacggtatc accggacctg tcaacgacgc tcaaaagcat
     4681 cagctcggcc gcatgaaggc gagcgcgcag catctgctgc atctcatcga ccagattctc
     4741 tcgtactcac gtgtggatgc cggacgggag attgttcagc tggaggacat cgatgccaat
     4801 gaggtcgcgc acgacgcggc gacactggtc gagccgctgg cacgtgagaa agggcttcct
     4861 ctggaagttg tcccgatcgg atacccgctc gctatgcgta ccgacagcgg aaaggtgcga
     4921 cagattctcg tcaatctgct gtccaatgcg gtcaagttca ctccgtcggg cagggtcaca
     4981 ctggtcgttc agcatgatgg cgcaatcgtt cgctacgtcg ttcgcgatac cggaatcggc
     5041 attgcggacg agcaccgtga ccggatattc gatgcattct ggcaggtgga gcagccaagc
     5101 actcgtcgtg tcggcggtac tggcctgggc ctgagcgtga cgcgccgcct cgcgcggcta
     5161 ctgggcgggg atgtgaccgt cacgagcaag gtgggcgagg ggagtgcctt cattgtttcg
     5221 ctgccactcg agctgccctc ccgcgccccg accggtgagc cgaccgccgt cgttgcctga
     5281 cgcggctcac gggtggggcg actttccgaa tacggtgctc cactttcgct cgacacctga
     5341 gataacgatc gatcttcgga cggtcgtcga cgagtcgacg cgatcgaagc tccatcaagt
     5401 ggggttcgaa cacttgttcg gagttattac agctcaggag cctatgggag tggcgcagct
     5461 ggcgaccgta aacgatgcgc ttgcggctag cttacagcag gacgccgcgc ggctgggtgt
     5521 catgcacgtc tgcgtcgatg cgtgcagtcc cgacgagtcg cactgtgagc gaagcgtcgc
     5581 gattgcgctg gatgagcgat cgctgatcgg cctcgcgcac aggtatgaa
//
LOCUS       DATIMD010000546         3871 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2535788, whole genome shotgun sequence.
ACCESSION   DATIMD010000546 DATIMD010000000
VERSION     DATIMD010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3871
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2535788"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..249)
                     /locus_tag="VLI40_12235"
     CDS             complement(<1..249)
                     /locus_tag="VLI40_12235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97994.1"
                     /translation="MSRLTSFCIAASTAIAAATLTTAALPTSAGAQSPAIFDNAHSDL
                     RYRMVGPDRGGRVTTVTGVASEPRTFYMGVASGGLWKTT"
     gene            complement(345..911)
                     /locus_tag="VLI40_12240"
     CDS             complement(345..911)
                     /locus_tag="VLI40_12240"
                     /inference="COORDINATES: protein motif:HMM:NF013786.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HSU97995.1"
                     /translation="MNDAVRPLRNDEVRVLTLDSGDSATVRDAARRVLAALLGTPVEK
                     VELYDAPKGKPLLRNDPALHFSISHSHDVSMIAVTRVAPVGVDIEKLRAVPNAEAILR
                     RFFTREEIATILTDDNRDLRFIEAWTRSEARVKVRGASVWEAATPDPNATVRALHAPD
                     GFAASVAVADPAWTITQYNISIADIVAL"
     gene            complement(928..1398)
                     /locus_tag="VLI40_12245"
     CDS             complement(928..1398)
                     /locus_tag="VLI40_12245"
                     /inference="COORDINATES: protein motif:HMM:TIGR00040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HSU97996.1"
                     /translation="MIRLGLISDTHGLLRPAVHSAFKGVDLILHAGDVCGDDILHELR
                     TIAPVHAVAGNCDPIGDPNLPLSFEHTFERLHLHMSHGNELGRPKPEQLLKAYPDADI
                     IIYGHTHKQLIFDLSGRMVVNPGAAGARRFDLAPSVAIMTIDDGRAAVELVELE"
     gene            1530..1769
                     /locus_tag="VLI40_12250"
     CDS             1530..1769
                     /locus_tag="VLI40_12250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU97997.1"
                     /translation="MLRLALALGVRSLRHPTLAVDLARVSWRFRNRHWYRKPPFLPIP
                     DRNYVRWRMDTAYGSPDAIPSVQDAERYVRWAARK"
     gene            1751..2746
                     /gene="queG"
                     /locus_tag="VLI40_12255"
     CDS             1751..2746
                     /gene="queG"
                     /locus_tag="VLI40_12255"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HSU97998.1"
                     /translation="MGSTEMIDSGEIGTAIETTADTRIEERIKTRARELGFDLVGIAT
                     LGQVETAGHFDEWIAAGYAGEMGYLERGAEKRHDTRRPFEGVQSAVVVAMNYGGTQPD
                     GPVARYARGDDYHDVMIERLNGLHRWIENEIGHAVRGKPYVDTGPILERDLARRAGLG
                     WFGKNTNLINPELGSYFFLGELLLDLELSADDPFEMDRCGSCTRCLDACPTNAFVAPR
                     VLDATRCVSYQTIEQKGPIAETLREAIGEHLYGCDVCQEVCPWNVKFSRDATEGALVA
                     REVIAGKDARTLAEDLLAMSQEEFSATFRKSPMKRAKLAGLQRNARVMLANSRAP"
     gene            complement(3015..3641)
                     /locus_tag="VLI40_12260"
     CDS             complement(3015..3641)
                     /locus_tag="VLI40_12260"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HSU97999.1"
                     /translation="MQGSILRSIRSSAIVAFGALVLAAPAISAQTVTFDDISTSTECG
                     AFTQVANGYAGLNWSNVYAYNVAAFSTACAGLTGYPTGAVSSPNAIFNGTGNPATISA
                     ASPFTFSSGYFGAVFRNEQLTLTGSLDGTTVFTQILNIAYAQPALFTINSAPINSLTL
                     STGGQRTQFTADNLTFNANTVTTPEPSSVVLLGSGLLGLVPMVRRRRR"
BASE COUNT          744 a         1099 c         1292 g          736 t
ORIGIN      
        1 ggtggtcttc cacaggccgc cgctcgcgac gcccatgtag aacgtgcgcg gctcggaagc
       61 cactcctgtg acggttgtga cgcggccacc acgatccggc ccgaccattc gatagcgcag
      121 atcggagtga gcgttgtcga atatcgcggg cgactgcgcg ccggctgatg tggggagcgc
      181 tgccgtggtg agcgttgccg cagcgatcgc ggtgctcgcg gcgatacaga atgacgtgag
      241 acgggacatg agatctcgct gacaggtgaa acatgaacag tttgtgcgtg cagctagcgt
      301 ccggaagtat ggaacacaat gcgcgtcctg tccatgccga tcgactagag agctacgatg
      361 tccgctatgg aaatgttgta ttgcgtgatc gtccacgcag gatctgcaac tgctaccgag
      421 gcggcaaatc catcgggcgc gtgaagtgcg cggaccgtag cattcggatc tggcgttgcc
      481 gcctcccaca cacttgcgcc gcgcaccttg acgcgcgcct cggatcgtgt ccacgcttct
      541 atgaagcgca gatcgcggtt gtcgtcggtg agaatcgtcg cgatctcttc gcgcgtgaag
      601 aagcgccgga gaatggcctc cgcattcggc accgcgcgca gcttctcgat gtcgacacca
      661 accggcgcca cgcgtgtcac cgcgatcatc gatacatcgt gcgagtgtga gatcgagaag
      721 tgcagcgccg gatcgttgcg cagaagcggc tttcccttgg gcgcgtcgta cagttctact
      781 ttctcaacag gcgtaccgag aagcgctgcg agaacgcgac gtgccgcgtc gcgaacggtt
      841 gcactgtctc cactgtcgag tgtgaggaca cgcacctcat cgttgcgtaa cggacggact
      901 gcatcgttca cggaatcatg ctcacaatca ctcgagctcg accagctcca cggcggctct
      961 cccatcatcg atcgtcatga tcgcgacgct cggcgcgaga tcgaatcgcc gagcacctgc
     1021 agcgccggga ttcacgacca tacggcccga gaggtcgaag atcagctgtt tgtgggtgtg
     1081 gccgtatata atgatgtccg catcggggta tgccttgagc aattgctccg gcttgggccg
     1141 gccgagctca ttgccatggc tcatatgcag gtggagtctt tcgaacgtat gttcgaatga
     1201 caacggcagg tttggatcgc cgatcgggtc gcagtttcca gcgaccgcgt ggaccggggc
     1261 gatagtcctg agttcgtgca ggatgtcgtc gccgcagacg tcgccggcat ggaggatcag
     1321 atcgacgccc ttgaaggccg agtggacggc ggggcgcagc aggccgtgcg tgtcggagat
     1381 gagtccgagt ctgatcactg tcgcatcctg aagcggcaca tcgtccaaag ctagacaaaa
     1441 gcatgcgcga acgagaagtg cagccggcgt agcaatcgcc tcgcctgatg cacggtctgt
     1501 ctaaattgtg atatgtccat gccgtgcaca tgctgagact ggccctcgcg ctcggcgttc
     1561 gctcgctgcg ccatccgacg ctcgctgtcg atctcgcgcg cgtgagctgg cgtttccgga
     1621 accggcactg gtaccgaaag ccgccgtttc ttccgattcc ggacaggaac tacgtgcgct
     1681 ggcgcatgga cactgcttat ggatcgccag atgcgattcc atcggtgcag gatgctgaac
     1741 ggtatgtacg atgggcagca cggaaatgat cgattcaggc gagatcggaa ctgcaatcga
     1801 aactacggcc gacacgcgca tcgaagagcg aatcaagacc cgtgcacgcg agctcggctt
     1861 cgatctcgtc ggcattgcaa cgttgggcca ggtcgaaacc gcagggcatt tcgacgaatg
     1921 gattgcggct ggttacgctg gcgagatggg atatctggag cgcggcgccg agaagcgaca
     1981 cgacacgcgg cgaccattcg aaggtgtgca gagcgcggtg gttgtcgcga tgaattacgg
     2041 cggcacacag ccagatggcc ccgtcgcacg atacgcgcgt ggtgacgatt accacgatgt
     2101 gatgatcgag aggctgaacg ggctgcaccg ctggatcgag aacgagatcg gccatgctgt
     2161 gcgcggaaag ccgtacgtcg atacgggtcc gatactcgaa cgggatctcg cgcgtcgcgc
     2221 tgggctcgga tggttcggga agaacaccaa tctcatcaat cccgagcttg gctcgtactt
     2281 ttttctcggt gagttgctgc tcgatctcga actcagcgcc gatgatccgt tcgagatgga
     2341 cagatgcggg agttgcacgc ggtgtctgga tgcgtgtcca acaaatgcgt tcgtcgcgcc
     2401 gagggtgctg gatgcgacga gatgtgtctc gtatcagacg atcgagcaga aagggccgat
     2461 cgcggagacg ttacgcgagg cgatcggaga gcatctgtat ggatgcgatg tttgtcagga
     2521 ggtgtgtccg tggaatgtga agttttcgcg ggacgcgacg gaaggggcgc ttgtcgcgcg
     2581 ggaggtgatc gcggggaagg atgcgcgcac gctcgctgaa gatctgctcg ccatgtcgca
     2641 ggaggaattc agtgcgacgt tccggaagtc gccgatgaag cgcgcgaagt tggcaggatt
     2701 gcaacgcaat gcgcgcgtga tgctcgcgaa cagccgagca ccatagctat ccagcgccac
     2761 ctgacgcttc tttcgggcgc tttcatggaa gcggcgggcg gaagctcatc agcccgggaa
     2821 gtcacctgcc tcgagccgct cgatgagatc gagtaggccg ctcgcttccc acgagcggtt
     2881 gcgcttcgat tccgggagcg gcaccaggat ctgtgcggcc actaactgtt caatggcgtc
     2941 gtagatcgct gtcttgacgc gtccgctacc gcgccgcagg cggccttccg cagctccagg
     3001 aagcggcgac ccatctacct ccgccgcctg cgtaccattg ggacgaggcc gaggagtccc
     3061 gatcccagca gtaccaccga gcttggctcg ggtgtcgtca cggtgttcgc gttgaacgtg
     3121 agattatcgg cggtaaactg cgtccgctgc ccacccgtcg aaagcgtgag ggagttgatg
     3181 ggcgcgctat tgatcgtgaa aagcgccggc tgcgcatagg cgatgttgag gatctgcgtg
     3241 aagaccgtgg tcccgtcaag actcccggtg agcgtgagct gctcattccg gaagaccgcg
     3301 ccgaagtacc cgctgctgaa cgtgaagggt gacgctgcgc tgatggtggc cgggttcccg
     3361 gtgccgttga agatcgcgtt cggcgacgag accgctccgg tggggtaccc agtgaggccg
     3421 gcgcacgccg tggaaaatgc cgcgacgttg tacgcataga cgttcgacca gttgagcccc
     3481 gcatacccgt tggcgacctg cgtaaaagcg ccgcactcag tgctcgtgga gatgtcgtca
     3541 aacgtgaccg tctgggcaga gatggcgggt gcggcgagca ccagggcgcc gaaggcaacg
     3601 atggcggagc ttctgatgga gcgcagtatg gatccttgca tcaggtgttt ttctcaggac
     3661 ggggtgggtg gccgcctcgg acaagatccc gacgctgcgt agccgaccga ctgaaggcac
     3721 gcgccgtgcc gagcaagtac cggggcttga acgccgcgag tggccgcgag tggccgcgtg
     3781 agccgagcgc gcttgcggca tcgtgacggc cagggtaagc cgttggtgca gtgatgctta
     3841 cgagcgacga cacaaccctg ttgaccggcg c
//
LOCUS       DATIMD010000547         1995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1964517, whole genome shotgun sequence.
ACCESSION   DATIMD010000547 DATIMD010000000
VERSION     DATIMD010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1964517"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1995)
                     /locus_tag="VLI40_12265"
     CDS             complement(<1..>1995)
                     /locus_tag="VLI40_12265"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HSU98000.1"
                     /translation="VLHFEGPMLVLAGAGSGKTRVLTTRIARLVEHHGVDPSRILAVT
                     FTNKAAGEMRERISRLLGYEPKGMWCGTFHAIGARLLRSHAAAVGRAPNFTIYDEDDN
                     IAVIKRVMEGAGISTKAWSAKAIASLISDAKNALVTPEEYASLALDPVSRNASVVYRN
                     LEAALRQANAVTFDDLLTLPVELLSRDESLRRRLSERFQFILVDEYQDTNRAQYQFIK
                     LLGGEHSNVVVVGDDDQSIYGWRGADIRNILDFEREFPAARVVRLEENYRSTPNILEV
                     ANAAISANIGRKGKTLRATRPAGERATVTATLDDRDEADWVVEEIMSRMSSENRTARD
                     FAILYRTNAQSRTLEDALRNHALPYRLVGAVRFYDRREIRDLMAYLKLIANPSDNEAF
                     RRAVAVPKRGLGDTTVETLAGIAQGAGVSMLQAAADPDLLTALRPAARSGLAAFAELI
                     ARFRDMARESSVDELLRDLVEALRFGDYLRADSPEQARDRIENVTALIDGAAETVIDE
                     GGEVGLTPLDHFLQRAMLVAGTDQLDPSAEAVTLMTMHNAKGLEYPVVFITGMEDGLF
                     PTSQAFDDPAKMEEERRLFYVGITRAEEKLYLTHSESRRRNGEIVGAIPSRFLRDIPD
                     GMLEARGTIRAKTSGRHSWADSVRRKTHEVPQWRQAKRDW"
BASE COUNT          367 a          625 c          616 g          387 t
ORIGIN      
        1 cccagtcacg tttcgcctga cgccactgcg gcacttcgtg cgtcttgcgc cgcacggaat
       61 cggcccatga atggcggccg ctggtcttcg cgcgaatagt gccgcgcgcc tcgagcatcc
      121 catcggggat atcgcggaga aagcgcgacg gaatcgcgcc aacaatctcg ccgttgcgcc
      181 gccggctctc ggagtgagtc aggtacaatt tttcttccgc gcgcgttatg ccgacgtaga
      241 agagacgtcg ttcctcctcc atctttgcag gatcgtcgaa cgcctgcgac gtgggaaaga
      301 ggccgtcttc cataccggtg atgaaaacga cgggatattc cagacccttc gcgttgtgca
      361 tcgtcatcag tgtcaccgct tcggcggacg gatccagctg atctgtacca gcgaccagca
      421 tcgcgcgctg gaggaagtga tcgagtggtg tgagaccgac ttcaccgcct tcgtctatca
      481 ccgtttccgc ggcgccatcg attagagcag tcacgttctc gatccggtcg cgggcctgct
      541 cggggctgtc cgcgcgcaga taatcgccaa atcggagcgc ttccacgagg tcgcgcaaca
      601 gctcatcgac actggattcg cgcgccatgt cgcgaaagcg cgcgataagt tccgcgaatg
      661 ccgcaagacc cgaacgcgca gcaggtcgta acgctgtcaa cagatcagga tcggcagccg
      721 cctggagcat ggatacccct gcaccctggg cgatgccggc aagcgtttcg actgtagtgt
      781 cgccaaggcc gcgcttggga accgcaaccg cgcgtcggaa tgcctcgtta tcggatgggt
      841 tggcgatgag cttgaggtag gccatgagat cgcggatctc acgccggtcg tagaaccgga
      901 ccgcgcccac gagtcgatac ggcagtgcat ggttgcgcag cgcatcctcg agcgtgcggc
      961 tctgagcgtt ggtgcggtac agaattgcga aatcgcgcgc cgtgcgattc tcggacgaca
     1021 tgcgcgacat tatttcctcg acgacccagt cggcttcatc gcgatcgtcg agtgtcgccg
     1081 tgacggtggc gcgctcgccg gctggccgtg tggctctcaa cgtcttgccc ttgcgtccga
     1141 tgttggcact gatcgcggcg ttcgcaacct cgaggatgtt tggcgtcgaa cgataattct
     1201 cctcaaggcg aaccacgcgc gccgcgggaa actcgcgctc gaagtcgaga atgttccgga
     1261 tgtcggcgcc gcgccaccca tagatggact ggtcatcgtc gcccaccacg acgacgttgg
     1321 aatgttcgcc accgagcaac ttgatgaatt ggtactgcgc gcggttggtg tcctgatatt
     1381 cgtccaccag gatgaactgg aatcgctcgc tgagccggcg tcgcagcgat tcgtcgcggg
     1441 acaacaactc aaccggcagc gtcagcagat cgtcgaacgt cactgcgttg gcctgccgga
     1501 gtgccgcttc gagattgcgg tacacgaccg acgcgttgcg cgacacggga tcgagagcaa
     1561 gcgacgcgta ttcctccggt gtcaccagcg cattcttggc gtcggatatg agcgacgcta
     1621 tggccttggc ggaccatgcc ttggtggaaa ttccggcgcc ttccatgacg cgcttgatga
     1681 cggcgatgtt atcgtcctca tcgtagatcg tgaagttcgg cgcacgaccc accgccgctg
     1741 cgtgcgatcg cagcagacgc gcaccgatgg cgtggaatgt cccgcaccac atgcccttcg
     1801 gctcgtagcc gagcaaccgg gagatccgct cgcgcatctc gcccgcagcc ttgttcgtga
     1861 aggtcacggc gaggatacgc gacggatcga ctccatgatg ctcgacgagc cgcgcaatgc
     1921 gcgtcgtgag cacccgtgtc tttccggagc ctgcgccggc cagcacgagc atcggccctt
     1981 caaaatgcag tacag
//
LOCUS       DATIMD010000548         2099 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2825668, whole genome shotgun sequence.
ACCESSION   DATIMD010000548 DATIMD010000000
VERSION     DATIMD010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2825668"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            707..1594
                     /locus_tag="VLI40_12270"
     CDS             707..1594
                     /locus_tag="VLI40_12270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98001.1"
                     /translation="MTTENPLETLDRHWAVKVVTPEDRAAAIQYGMGVLTRLCGGDST
                     SETESPPEFVVPLAGAYVIAASEWLDFDGAASPTTILSSEQEAQRSAHIEAGADRAFI
                     LTASLPLEPNERNAALYRALLLAGLAQLAHKQTEFRYWLRANEHILFPPNEDADRWDL
                     DLLRRVVELWTHVLRGAGPSGLQHAMEIVASIREDRPIREPAFFRSVDPVDETRMRFY
                     VFTLFHLTEAATELLLFRLHGEPERIETRLYAHFALARDAAGGDPRLDASFDWLYEAS
                     RHIVAQRTAQLELLPESST"
BASE COUNT          378 a          686 c          624 g          411 t
ORIGIN      
        1 ttgcggatcg accttgatgg tgagtccgtt gcattcaccg ccaacgcatt tgacctgaat
       61 catgagcaca ccctcctcgg tgagtctaag ctggcttgtt gaactgcaga tcgcgacccg
      121 gtgagaaatc gtggtccggc cgcacacgcc cgctcgaccg tctccgcgat actttcgggt
      181 agccgtaccg cgccacgcgc atgtgcctcg agcaccaacc gcaatgcgcg tcgctgtcgg
      241 tcgaacgccg acaacaactc cgcgccccca tctggggacg ccaacacacc tgtgacgaga
      301 cgctgaagtg aggggtcggc accctcgtcg gaggcgtgcg ccatgcatgc ctccaggttc
      361 catcggcttc ggtgatcgtc gcagagcccc gcacgtccgc tgcgaggtgc gtcctgggtg
      421 catgccgcgc acatcgcaat gccgcgcagc aattccgcac tcggaacgaa ggccatcgag
      481 tcttcctcta gtacttgtcg taagtcgttc actagttcgt gatcgcgggt cgtcgctaag
      541 accagttgaa ggcgccggcg ggcgttgggc tcgatgctca tcgcatcctc ccggcgctcg
      601 atggaacttc acttagtcgc aacttgttac tgatccgaca catgtccgtc agagaggtgt
      661 gcgaaggtga ggcggtgccg cctttcctga ccgtcgccag cgcgccatga ctactgagaa
      721 tccgctcgag accctcgacc gccattgggc ggtcaaggtc gtcacccccg aggatcgcgc
      781 cgccgccatt caatacggaa tgggggtgct gacgcgtctg tgcggtggcg actcgacgtc
      841 cgaaacggag tctcccccgg agttcgtcgt tccgttggcc ggtgcatacg tcattgccgc
      901 ttcggagtgg ctcgacttcg atggtgccgc gtcgcccacc acgatcctgt ccagcgaaca
      961 ggaggcccaa cgctcggcgc acatcgaagc tggcgccgat cgcgcgttca ttctcactgc
     1021 gtcccttccg ctcgaaccga acgagcggaa cgcggctctg tatcgcgcgc tcttgctcgc
     1081 cggtctcgcg cagctcgccc acaagcaaac ggaatttcga tactggctgc gtgccaacga
     1141 gcacattctc tttccgccca acgaagatgc cgaccgttgg gatctcgact tgctgcgccg
     1201 tgtcgtcgag ctctggaccc acgtgcttcg aggcgccgga ccgtccggcc tccagcacgc
     1261 gatggagatc gtcgcgtcga ttcgtgaaga tcgtccgatt cgcgaaccgg cgttcttccg
     1321 ttccgtcgac ccggtcgacg aaacgcgcat gcgcttctac gtcttcactc tgttccacct
     1381 gaccgaagcg gccactgagc tgctgctgtt ccggttgcac ggcgagcccg aacgcatcga
     1441 gacgcgactc tacgcccact ttgctctcgc acgcgacgct gccggtggtg atccccgact
     1501 cgacgccagc ttcgactggt tgtatgaggc ctcgcgacac atcgtcgctc aacggaccgc
     1561 ccaactcgag ctgctgcccg aaagcagcac ttgagtaaac actaatcatc gcggggtccg
     1621 accggcgctg ccgacgagca tgcgtcggcc gtcaggcgat tgtgcaacga caacggagac
     1681 gcgcgtgcgc ggccgcgtct tcgtttgtaa cgtcagtatg cgggtgtcgg agctggccag
     1741 cgcatgcgtc ggctcgtcat cgacgagctc gaaccactcc acttcgccaa tctgattcgt
     1801 gcgccgcacg tagtacgcgt ccgctgccca aaacgcatcc catcgctccg catcggtcga
     1861 ttcggtcaaa agcgccgatc gcggtgcgtc ttcgagcggc ccttgtggag cggcgcagct
     1921 ggcgaggtgc attgtggggc gtgcgcgaga aagaaaaaat cgcgtcgatc ggcgacatcg
     1981 ccgtcggagg ggacggcaac ctagaaaaca ctggcagaaa gcgcaatagg aaagttttcc
     2041 ataagtcgtt gctactgctg tggatagcga ttgtggatga ctgtcgataa cgcgctaac
//
LOCUS       DATIMD010000549         5116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3693845, whole genome shotgun sequence.
ACCESSION   DATIMD010000549 DATIMD010000000
VERSION     DATIMD010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5116
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3693845"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..619)
                     /gene="dut"
                     /locus_tag="VLI40_12275"
     CDS             complement(101..619)
                     /gene="dut"
                     /locus_tag="VLI40_12275"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF001862.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HSU98002.1"
                     /translation="MDSERRSIRFERLRDGVEFPVRATAHSAGYDLKAFLLGGPTVKL
                     SLAGRQYDGVPKSTADGASLQLAPGERAIIPLGFRASLPPGYEAQIRPRSGTSFKTSL
                     AIANSPGTIDPDYNGEWGVLVRNDGAEPILITHGERIAQMVIAKYEVLEFEDGDVRQT
                     TDRDGGFGSTGH"
     gene            688..2652
                     /gene="acs"
                     /locus_tag="VLI40_12280"
     CDS             688..2652
                     /gene="acs"
                     /locus_tag="VLI40_12280"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HSU98003.1"
                     /translation="MNEIDALLNEERKFPPPPQFAANAVVNDPAIYDEAARDPEAYWA
                     REAARLDWIQPWTQVLDWKPPHFKWFVGGKLNAAANCVDRHAHGARRNKAALIWEGEP
                     GDKRTITYAELYVEVTRFANVLQSLGVTKGDRVAVYMPLIPETAVAMLACARIGAIHS
                     VVFGGFSPDSLRDRIIDAKAKVLITADGGYRRGGVVALKANADKALAETPSIEHVVVV
                     QRNHGTSSEQISCSMQQPRDLWWHELMEKAHAGGDPVAMDAEDILYILYTSGTTGNPK
                     GVVHTTGGYMTAVTSTTRNVFDLREDDVFWCTADVGWVTGHSYLVYGPLSNGATCVMY
                     EGAPDWPDKDRFWALIAKHKITILYTAPTAIRAFMKWGDQYPARHDLSSLRLLGSVGE
                     PINPEAWIWYSRHIGHDHCPIVDTWWQTETGAIVISPLPGITATKPGSATFPLPGCSA
                     DLLDSNGRSIAVGGGLLALTRPIPSMLRTVWGDDERYQKTYFSKWSGRPDLYFPGDGA
                     KRDEDGYYWILGRVDDVLNVAGHRIGTMEVESALVEHPAVAEAAVVGKTHELKGQALA
                     AFVTVRASHQSSPELATELKQFVADKIGAIARPDDIIFAADLPKTRSGKIMRRLLRDI
                     AEGRALGDTTTLADAAVVEGLKQQYESLEP"
     gene            2649..3026
                     /locus_tag="VLI40_12285"
     CDS             2649..3026
                     /locus_tag="VLI40_12285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98004.1"
                     /translation="MIFRSLFPEALFGRRLHPNAERRLRLAQARADETIIRAHVDNAL
                     MFVDTLAEDLSFDRAIDTYIRVMAIPEPLASAVATRALVTLGRDLVPFRRRAREEGEE
                     DVEVKPRVRLDDAAARQRSIRRV"
     gene            complement(3074..3499)
                     /locus_tag="VLI40_12290"
     CDS             complement(3074..3499)
                     /locus_tag="VLI40_12290"
                     /inference="COORDINATES: protein motif:HMM:NF019499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin K epoxide reductase family protein"
                     /protein_id="HSU98005.1"
                     /translation="MIIAALALIGAFVALYLTLYKMGAIGHLACGLGGCERVNTSKWA
                     IFAGAPVAAWGLAFYVATFVVALVGTSPSWVDRRGISYLLAAMSLVGVLFSAWLTYLE
                     LYVIDAICKYCVTSAVIVTAIFLVSIADVVMGNRAQLSE"
     gene            complement(3519..4373)
                     /locus_tag="VLI40_12295"
     CDS             complement(3519..4373)
                     /locus_tag="VLI40_12295"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HSU98006.1"
                     /translation="MANNNPPRNAKSAAAKPSSNRGAFYGILVAIVIVGIAAILYLKS
                     SPPSGETGAEAQAAYAALQRDYAKAGPPRPYVMGDSTAPVVIEEFADFECPVCGSYAT
                     VTEPDVRKMIINTHLAYYKYYDFPLPMHHNTQSASNAAACAADQGKFWEMHDQLFAGQ
                     DAWGLNPDGATQVTDNPKSVFMGYAKAIGLNTSEFEQCYDSKKEQARVNANAAEGFRR
                     NVNQTPTFFINGKMFAGSIPYDVIKKAVDDAAAAKKAAPSTAPAATPATPAGTSAARP
                     AAKPAPSN"
     gene            4393..>5116
                     /locus_tag="VLI40_12300"
     CDS             4393..>5116
                     /locus_tag="VLI40_12300"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSU98007.1"
                     /translation="MQADVLRVPVGPGAVHVERYGHGGVPIVLLHGFGTCTFLWRYVA
                     PILAEAGHTAYAIDLFGHGESDRTPDADFGISAQAEYLDAAMTALRLARATIVGVDLG
                     GDVALRLAATRTDRVAKLVLINVPAYDELPARDIGVMQRSTARFALRVTRGILGATTL
                     LQPLLEGSVAQTEHMPTRLLARYLAPFAGRDGVSHLLTLGAAIRRSDIEDLDLSDVRA
                     PTLIIRGDHDEWLSRDIASRLAV"
BASE COUNT          946 a         1687 c         1534 g          949 t
ORIGIN      
        1 tggtcatctc ggatgagccg ttcttggtag gggtttcgat gcgaaatcta gcgggtgcgt
       61 taggcatcca aaacgccgga tgtccgtatg ggtctcctta tcagtgtccc gtactgccga
      121 atccaccgtc acgatccgtc gtctgccgta catctccatc ttcaaactcg agcacctcgt
      181 acttcgcgat caccatctga gcaatgcgct ctccatgagt gatgagaatg ggctcggcgc
      241 catcgtttct taccagtacg ccccactcac cgttgtagtc ggggtcgatc gtgcccggtg
      301 agttcgcgat ggcgagcgac gtcttgaagc tggtaccgct ccgcggccgg atctgggcct
      361 cgtagcccgg cggcagcgat gcccgaaatc cgagcggaat tatcgcacgc tcgcccggtg
      421 ccagctgcaa cgaggctccg tcagccgtgg atttcggcac gccgtcatac tggcggccgg
      481 ccaggctcaa cttgaccgtc ggaccaccaa gcagaaatgc cttgagatcg tagcccgcgc
      541 tgtgcgccgt ggcgcgtacc gggaattcga cgccgtcccg gagtcgttcg aaacggatgc
      601 tcctgcgctc tgaatccatg cggccaatct agccagtcgt accggaccac cgtcgcgtac
      661 cgacgcggaa gctgtatttt cagattcatg aacgagattg acgcgctcct caacgaagag
      721 cggaaatttc cgccgccgcc gcagttcgcg gccaacgccg tggtcaacga cccggcgatc
      781 tacgacgaag ccgcacgcga tccggaagca tactgggcac gtgaagccgc tcgcctcgac
      841 tggatccagc cctggactca ggttctcgat tggaagccgc cgcacttcaa gtggttcgtc
      901 ggcggcaagc tcaacgccgc cgcgaattgc gtcgaccgac acgcgcatgg cgcaagacgc
      961 aacaaggcag cgctgatatg ggaaggcgag cccggtgaca agcgcaccat cacctacgcc
     1021 gagctctacg tagaggtgac gcgattcgcc aacgtcctcc aatcactcgg cgtcacaaag
     1081 ggcgaccgcg tcgctgtata catgccgctc attcccgaga cagcggtagc gatgctcgcc
     1141 tgcgcacgca tcggcgcgat tcactccgtg gtattcggtg gattttcccc cgattccctg
     1201 cgcgaccgaa tcatcgacgc gaaagcgaag gtgctcatca ccgcagatgg cggttatcgc
     1261 cgcggcggcg tagtggcgct caaggccaat gcggacaagg cgctggctga aacgccatcg
     1321 atcgagcacg tagtcgtcgt gcagcgcaat cacggaacgt ctagcgagca gatctcctgc
     1381 tccatgcagc agccgcgcga tctctggtgg cacgagctga tggaaaaggc ccatgcaggc
     1441 ggcgatccgg tcgcgatgga cgcagaggat attctgtaca tcctctacac gtcgggcacc
     1501 accggaaatc ccaagggcgt cgtgcacacc accggcggct acatgaccgc ggtgacgagc
     1561 accacgcgca acgtcttcga cctgcgcgag gacgacgtat tctggtgcac cgccgatgtg
     1621 ggctgggtca ccggccactc atacctcgtg tacggcccgc tctccaatgg cgcgacctgc
     1681 gtcatgtacg agggcgcccc ggactggccc gacaaggacc gcttctgggc cctgatcgcg
     1741 aagcacaaga tcacaatcct gtacaccgcg ccgaccgcga tccgcgcctt catgaaatgg
     1801 ggcgaccagt accccgcgcg ccatgatctt tcctccctcc ggctgctggg ctccgtgggc
     1861 gagcccataa acccggaagc ctggatctgg tattcccgac acatcggtca cgaccactgc
     1921 ccgatcgtcg acacctggtg gcagacggag acgggcgcga tagtcatctc gccgctaccc
     1981 ggcatcaccg ctaccaaacc cggcagcgcg acatttcccc tgcccggctg cagtgccgac
     2041 ctgctcgatt cgaacggtcg ttcgatagcc gtgggcggcg gactgctcgc cctgacccgg
     2101 cccattccat cgatgctccg cacggtctgg ggcgacgacg agcgatacca gaagacttat
     2161 ttctccaagt ggtcgggccg ccccgatttg tattttccag gagacggggc gaaacgtgat
     2221 gaggacggtt actactggat cctgggccgc gtggacgacg tcctcaacgt cgccggccac
     2281 cgaatcggaa cgatggaagt cgaatcggcc ctcgtcgagc atccagccgt cgcggaggcc
     2341 gcggtggttg gcaagacgca cgagctcaag ggccaggcgc tggctgcatt cgtgacagtt
     2401 cgcgccagcc atcaatcatc gccggagctg gccaccgagc tcaagcaatt cgtggccgat
     2461 aaaatcggcg cgatcgcccg tccggacgac ataatcttcg ccgccgatct tcccaagact
     2521 cgatcgggca agatcatgcg ccgtttattg cgtgacattg ccgaaggtcg cgcgctcggc
     2581 gacaccacga cgctcgcgga tgccgctgtc gtggaaggcc tcaagcagca atacgaatca
     2641 ctggagccat gatctttcgt tctctatttc ccgaagcact ctttggccgc aggctgcatc
     2701 ccaacgcgga gcgccgtctg cggctggccc aggcccgtgc agacgagacg ataattcgcg
     2761 cgcatgtgga caacgcgctg atgttcgtcg acacgcttgc ggaagatctc tcgttcgatc
     2821 gcgccatcga cacgtacatc cgtgtgatgg cgatccccga gccgctggcg agcgccgttg
     2881 caacgcgcgc actcgtcacg ctcggccgcg atctggttcc gttccgccgc cgcgcgcgcg
     2941 aggaaggaga ggaagacgtc gaggtcaagc cgcgcgtccg cctcgacgac gcggctgcac
     3001 gccagcgctc catccggcgc gtgtaattac gacgtagcta cctgatggta gctacgtatt
     3061 gctattcgct ttgctactcg ctgagctgag cgcggttacc catcacgacg tcggcgatac
     3121 ttacaaggaa gatcgccgtc acgatcaccg ccgacgtcac gcagtatttg cagatcgcgt
     3181 cgatcacgta cagttccaga tacgtgagcc acgccgagaa caggactcca acgagcgaca
     3241 tcgccgcaag caggtaggat atcccgcgac ggtccaccca cgacggcgat gttccgacca
     3301 gcgccaccac gaaagtcgcg acgtagaacg ccagccccca cgcagcgacc ggcgctccgg
     3361 cgaatatcgc ccacttgctc gtattgacgc gctcgcatcc gcccagcccg catgcgaggt
     3421 gcccgatagc acccatcttg tagagagtga gatacagcgc cacgaacgcg ccgatcagcg
     3481 cgagtgcggc aattatcatc cgtcgcatcg cgcccgctct agttggacgg cgccggcttt
     3541 gctgcggggc gtgctgcgga cgttcccgcc ggtgttgcag gcgttgctgc gggcgccgtc
     3601 gaaggcgcgg ccttcttcgc agcggcagca tcatccacgg ccttcttgat cacatcgtac
     3661 ggaatcgagc cggcgaacat ctttccgttg atgaagaacg tcggtgtctg attcacgttg
     3721 cggcgaaatc cttcggctgc gttcgcgttg acgcgagcct gctccttctt gctgtcgtag
     3781 cactgctcga attccgacgt gttgagcccg atggcttttg catagcccat gaagacggac
     3841 ttcgggttgt ccgtaacctg cgttgcgccg tccggattga gcccccatgc gtcctgaccg
     3901 gcaaatagct ggtcgtgcat ctcccagaac ttgccctgat cggcagcgca tgctgccgca
     3961 ttcgacgcgg attgcgtgtt atggtgcatc ggcagcggaa aatcgtagta cttgtaatac
     4021 gcgagatgcg tgttgatgat catcttccgc acatccggct ctgtcacggt tgcatacgat
     4081 ccgcacaccg ggcattcaaa gtcggcgaac tcctcgatca ccaccggcgc cgtgctgtcg
     4141 cccatcacgt acggcctggg cggcccggcc ttcgcgtaat cccgctgcag cgcggcatac
     4201 gcggcctgtg cctctgcccc ggtctcgccc gacggcgggc tggacttgag atagagaatc
     4261 gcggcgatgc cgacgatcac tattgcgacg aggattccgt agaatgcccc gcgattggac
     4321 gacggctttg ctgccgcgct ttttgcgttc ctgggaggat tattattcgc catcccgtga
     4381 atttatctcc agatgcaagc tgacgtttta cgcgtaccgg tggggcccgg cgcggtgcac
     4441 gtggagcgat acggccacgg cggcgtaccg atcgtcctgc tgcacggctt cgggacctgc
     4501 accttcctct ggcgctacgt agctccgatt ctcgccgaag ctggccatac ggcctatgcc
     4561 atcgacctgt ttggccacgg tgagtcggac cgcacgccgg acgcggattt cggaatatcg
     4621 gcgcaggcgg agtacctgga cgcagcgatg accgccctcc gtctcgcccg cgcgaccatc
     4681 gtcggcgtcg acctgggcgg cgacgtggcg ctccggttgg cggcaacacg caccgatcgc
     4741 gtggcgaagc tcgtgctcat caacgtcccc gcatacgacg agctgccggc acgcgatata
     4801 ggcgtaatgc agcgcagcac ggcgcgattt gccctgaggg tgacgcgcgg tatactcggc
     4861 gccacgaccc tgctccagcc gctgctggag ggaagcgtcg cgcaaaccga gcatatgccg
     4921 actcgcctgc tcgccagata tctcgccccg ttcgccggcc gcgacggcgt gagccacctc
     4981 ctcacactcg gcgcagcgat ccggcgctcg gatatcgagg atctggacct ttccgacgtg
     5041 agagcgccga cgctgataat ccgcggcgat cacgacgagt ggctgagccg cgacatcgcg
     5101 agtcggctcg ccgtcg
//
LOCUS       DATIMD010000550         5758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1386645, whole genome shotgun sequence.
ACCESSION   DATIMD010000550 DATIMD010000000
VERSION     DATIMD010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5758
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1386645"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2033
                     /locus_tag="VLI40_12305"
     CDS             <1..2033
                     /locus_tag="VLI40_12305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98008.1"
                     /translation="HGAVWNGYVALGDLWRKSSTFQVMYGARLEANHYLSTPEFNPAV
                     QSAFGLRTDHAPNTVHVSPRIGFTWVRKPEGPGIRFTRIGEFHTGPTSYVRGGVGEFR
                     NILPANLLTNASIATGLPNGLRSLACVGAAAPIPNWGEYLADPASIPTQCLGGATPVF
                     TDAAPSVQLFDPGYTAPRSWRGNLAYSSSYKLLTYSIEGLYSLNLNQPGRTDVNFAGV
                     PRFTLADEGRPVFVDQASIVPTTGALSSVQARVSPLFGHVIDNVSTLTSRSKQVTLSL
                     SPELSGISDWFFGINYTLADTRARESGFDGATFGSPIAREWARGDLDVRHQLLLQGGY
                     TFKRVALTFFGRLQSGLPFTPMVGGDVNGDGLANDRAFIFNPATSTDASLASATRTLL
                     SNSPRSVRDCLTTQMEHAAGRNSCEGPWTTSLNAELSYSGKMPITNQYGSISLALSNP
                     LGGLDQLLHGANHLRGWGTPAFPDPVLYRPTGFDPGTNRFSYAVNPRFGNTRPANTLL
                     RVPFRVTLDVSLSVGRPLPQQMLNRWLKPGRNGRKGPRLSVAELKRRYARNVPDPYSS
                     ILEESDSLLLSRDQAEALQKADTAYRQHIDSVWTALSEYLASLGDNYNSAEALKRQEA
                     AVDEGWEISRLDVQRTLPNILSPIQLKLLPGLPAMLFKAKEKIQIRMFTMGS"
     gene            complement(2051..2503)
                     /locus_tag="VLI40_12310"
     CDS             complement(2051..2503)
                     /locus_tag="VLI40_12310"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HSU98009.1"
                     /translation="MPAVGSVAPDFTLGSTSGQQVTLSSFRGKNAVLVAFFPLAFTST
                     CTAELCEFSDDYDEFVRAGVVVLPISVDSVPTLKEFKAKHHMKTDLLSDFKRDAGQEY
                     GVMWQDAFFTNRAYFLIDRNGVIRWEHIEETPSGKRSNAEILAEIAKL"
     gene            complement(2700..3110)
                     /locus_tag="VLI40_12315"
     CDS             complement(2700..3110)
                     /locus_tag="VLI40_12315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98010.1"
                     /translation="MADRIRISNSASRRIILGATLILGAAAVVLIFAPTELAGSIGAP
                     HAAVVTILLQLYGAALFGLAMTGWMVQGAIVGGVFGRSYVVGNAAHAFVGAFTLTRPA
                     IEAGAAPVLQVIAGIYWLLAFTFGYLMFVSTPRS"
     gene            3246..4256
                     /locus_tag="VLI40_12320"
     CDS             3246..4256
                     /locus_tag="VLI40_12320"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HSU98011.1"
                     /translation="MTPRLHWDANTDGAQRAARVVALRALDDLADAYDRIRRRDADSL
                     HDFRVALRRLRSWMRLYRPCLDDTVRRRTRRRLSRIADATRDLRDLDVQLAWLRSERN
                     ALGDSRLEAATWIIAELKRDRKPAWRKFRKEARRDFGRTVQALRNDLRHYVTVHDVRD
                     GESVPSMRTVTASLLGDQATALAVAFTRIRSADDARRLHRARILAKRARYVLDALSAQ
                     APELSSVADDLARFQDVVGELRDAQLLAHRVAREVTSIAAERTALVASELVYRPSGGM
                     DFTRVTAESPFDASLSLLFARLHDRISAAERGVTASLLPDASARLVASLENSARRFGS
                     GA"
     gene            complement(4288..4358)
                     /locus_tag="VLI40_12325"
     tRNA            complement(4288..4358)
                     /locus_tag="VLI40_12325"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4324..4326),aa:Ala,seq:tgc)
     gene            complement(4506..>5758)
                     /locus_tag="VLI40_12330"
     CDS             complement(4506..>5758)
                     /locus_tag="VLI40_12330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98012.1"
                     /translation="MSCVILAVIGTVTFIFGAFVGADRAWQALHFNWLFFSTVSSAGV
                     TVVAVQRITTARWSRPVVRFMEGYVAFLPVAFVILCLSLTIGRDHIFPWAQHPLMIEE
                     KRQYLNVPFFITRDLIMFGVQTIISVWYIYTSVRLDVGVVPESGASWARGIRERMRNG
                     FGEERRELHSTHSRQGKLAVAMVFAFALFWIIMSWDLSMSLDPHFQSTLYGYWFFMGA
                     WVAAIAAWTLITMAWRSHLQRQDMITDVHFHDLGKLCFAFTAFWGYLTFGQYLVIWYG
                     NLGEETHWARLRLIAPWSWITMTVVALMFVLPFFGLLSRAAKVYLPTMAFFAACLVVG
                     LYLHRYDEIYPSIYGVRVDGTLPFGLWEIAITAGYLGIWGLCYIAFMDAFPRMRVVLL
                     TSPFRDEVQVPVNPKTMDPLPAHE"
BASE COUNT         1198 a         1785 c         1743 g         1032 t
ORIGIN      
        1 tccatggcgc ggtctggaac ggttacgtcg cgctcggcga cctctggcgc aagtcgtcca
       61 cgtttcaagt gatgtacggc gcgcgactgg aggcgaatca ttacctgtcg acaccggagt
      121 tcaatcctgc ggtacagtcc gcattcgggc tgcgcacgga tcacgcgcca aacacggttc
      181 acgtaagtcc gcgaattgga tttacgtggg tcaggaaacc ggaaggtccc gggatccgct
      241 tcaccaggat cggcgaattc cacaccggac cgaccagcta cgtgcgaggc ggagtcggcg
      301 aattccggaa tattcttccg gcaaatcttc tcaccaatgc gtcgatcgca acaggcctgc
      361 cgaacggcct gcgatcgctc gcgtgcgtcg gtgccgcagc gcccatcccc aactggggcg
      421 agtatctcgc cgatcccgct tcgataccaa cgcagtgtct cggtggtgca acgccggtgt
      481 tcacggacgc cgcgccgtct gtgcaactgt tcgatccggg atataccgcg ccgcgaagct
      541 ggcgcggcaa cctggcttac tcgtcgagct acaagctgct gacgtactcg atcgaaggtc
      601 tgtactcact caatctgaat cagcccgggc gtactgacgt caacttcgca ggggtgccgc
      661 gattcacgct cgccgacgaa ggacggccgg tgttcgtcga tcaggccagc atcgttccga
      721 caaccggtgc actgtccagc gtgcaggcgc gcgtatctcc gctattcggg cacgtcatcg
      781 acaacgtgtc cacgctgacg tcacggagca agcaggtcac gctgtccctt tcgccggagc
      841 tgagtggaat ctccgactgg ttcttcggga tcaactatac acttgccgac acgcgagcac
      901 gtgagagtgg cttcgatgga gcgacgttcg gcagtcccat tgcgcgcgaa tgggcccgcg
      961 gcgatctcga tgtgcggcac cagcttctgt tgcagggcgg ctacacgttc aagcgcgtgg
     1021 ctctgacttt ctttggccgc ctgcaatcag gccttccctt cactccaatg gttggcggtg
     1081 acgtcaacgg tgatgggctg gcgaacgatc gcgcatttat cttcaatccg gcgacgagca
     1141 ccgacgcttc actcgccagc gcgacgcgaa cgctgctctc caactcgccg cgaagtgttc
     1201 gcgactgcct gacgacacag atggagcacg ccgcgggcag gaacagctgt gagggaccct
     1261 ggactacttc gctcaacgca gagctgtcgt acagtggaaa gatgccgatc acgaaccagt
     1321 acggtagcat ctcactcgct ctctccaatc cacttggtgg actggatcaa ctgctgcacg
     1381 gagccaacca cttgcgcgga tggggcacgc cggcgtttcc ggatcctgtt ctctacaggc
     1441 caactgggtt cgaccctgga accaatcggt tcagctatgc ggtcaatccg cgattcggaa
     1501 atacgcggcc agccaatacg ctgttgcgcg taccgttccg cgtaacgctg gacgtttctc
     1561 tgagcgtcgg ccgcccattg ccgcagcaga tgctcaaccg ctggctcaag ccgggacgaa
     1621 acggacgcaa gggacctcgg ctgtcagtgg ccgagttgaa gcgtcgctat gcgcgcaacg
     1681 tgccggatcc ttactcgtcg attctggaag agtcggactc gctgctactg agtcgcgacc
     1741 aggcggaggc gcttcagaag gcggacaccg cttacagaca gcacatcgat agcgtatgga
     1801 cggcgctcag cgaatatctc gccagtctcg gcgacaacta caactcggca gaggcgctga
     1861 agaggcagga agcagctgtc gatgaaggct gggaaatctc gcggctggat gttcagcgca
     1921 cgttgccgaa catactcagc ccgatccagc tcaaactgtt gcctgggcta ccggcaatgc
     1981 tgttcaaggc gaaggagaaa attcagatca ggatgttcac catgggcagc tgaggaccgg
     2041 aacgcaccgc ctacagcttc gctatctcag cgagtatctc cgcattgctc cgctttccgc
     2101 tcggcgtttc ctcgatgtgc tcccaccgga tcacaccgtt cctgtcgatc agaaagtagg
     2161 cgcggttcgt gaagaacgca tcctgccaca tcacgccgta ctcctggccc gcatcgcgct
     2221 tgaagtccga tagcagatcg gtcttcatgt gatgcttggc cttgaattcc ttcaacgtcg
     2281 gtacggaatc gacggagatc ggcagcacga ccactccggc gcgtacgaac tcatcatagt
     2341 catccgagaa ctcgcacagc tcggcggtgc atgtgctcgt gaatgcgagt ggaaagaagg
     2401 cgaccagcac tgcgttcttg ccgcgaaatg acgacaacgt gacctgttgg ccggacgtcg
     2461 agccaagcgt gaaatcgggc gcgactgatc caaccgctgg cactggctga ttgtggattt
     2521 gcatggattt ggggttacat gatgtaacgg atgtacacca ccagtacgat acagaagatg
     2581 atggagtaca ggatgacgat gttgtcgctc cttcgcttcg gtccctttcc ggacgcttgc
     2641 cgccgactca tttcctctca atctcctcgt tcgtggccga ccggttaccc gacgccgctt
     2701 tacgaccgcg gggtcgatac gaacattaaa taaccgaagg tgaaagcgag tagccagtag
     2761 atgccggcaa tcacctgcag gacaggcgcc gcaccggcct cgatcgccgg ccgggtcagt
     2821 gtgaaggccc ccacaaacgc gtgcgcagcg ttgccgacca cgtaggaccg gccaaagacc
     2881 ccacctacaa tcgcgccctg gaccatccat ccggtcatgg ccagtccgaa cagcgcggct
     2941 ccataaagct gcagcaggat ggtcacgacc gctgcgtgcg gcgctccgat cgagccggcg
     3001 agctcggtcg gggcaaagat gagcaccacg gcggcggcac ccagaatcag ggtcgccccg
     3061 agtattatcc ggcgagatgc cgagttggaa atacggatac gatctgccat gattccaatt
     3121 aagaccggga cggacccagc gcaacgggtt gcgatacgcc gtgcccgaat tcaacacaga
     3181 gtttatggcg tcacggccac gttcggggcc ggaagacggt atcattcggg ttgggaacct
     3241 gttgaatgac gccacgactc cactgggatg ccaacaccga cggtgcacag cgcgcagccc
     3301 gcgtcgtggc gcttcgcgca ctcgacgatc tcgccgacgc atatgacagg atccgtcgtc
     3361 gcgacgccga ctcgcttcac gacttccgcg tggcgctcag gcgactcagg tcctggatgc
     3421 gtctgtatcg gccatgcctc gatgacacgg tccggagacg cacgcgtcgc cggctatcac
     3481 ggatcgccga cgccacgaga gatctgcgtg atcttgacgt ccagctcgca tggttgcggt
     3541 cggagcggaa cgcactcggc gattcccgcc tcgaggctgc aacgtggatc atcgcggagc
     3601 tcaagcgtga ccgcaagccg gcatggcgga aattccggaa ggaagcgcga cgcgatttcg
     3661 gaagaaccgt gcaagcgctc agaaacgatc tccgccacta cgtaacggta cacgacgttc
     3721 gtgacggtga gagcgtgccg tcgatgcgaa cggtgactgc gtcactgctc ggcgatcagg
     3781 cgacggccct cgcggtagca ttcacgcgca ttcgctccgc cgatgacgcc cgacgtttgc
     3841 atcgagcgcg cattcttgcc aagcgcgcgc gctacgtgct cgatgcgctg tccgcgcagg
     3901 cgcccgagct gtcgtccgtt gcagacgatc tcgcgcgctt ccaggacgtg gttggagagc
     3961 tgagagacgc acagctcctg gcacatcgcg ttgcgcgcga agtaacgtcg attgccgccg
     4021 agcgtacggc gctcgtggcg agcgagcttg tgtaccggcc gagcggaggg atggatttca
     4081 cgcgcgtcac cgcggagtcg ccattcgacg cgtcgctatc tctgctcttc gcgcgtctgc
     4141 atgaccggat ttcagccgcc gagcgcggag tgaccgcgtc gctactcccc gacgcgagcg
     4201 cgaggctggt cgcctcgctg gaaaacagcg caaggcgatt cggaagtggt gcgtagcgta
     4261 gtagtacgca gcgtactggt acggaagtgg aggctaaggg aatcgaaccc ttattctcgc
     4321 cttgcaaagg cgatgtccta ccgttgaacg aagcccccgg gacgcgaaca ctgaatctaa
     4381 tcgacgacga tgcccctgta aggcgcggat gtgtccgcgc ctgccactcg acgcgttata
     4441 cgccggacct gacacggaca cgacgtacat gaaggggcag acacggtggt ctgcccccta
     4501 tgacgtcatt cgtgggccgg gagcgggtcc atcgtcttcg gattcacggg cacctgcacc
     4561 tcgtcacgga agggcgacgt caggagcacc acacgcatgc gcgggaacgc atccatgaac
     4621 gcgatgtagc acagacccca gattccgaga tatccagccg tgatggcgat ctcccacagg
     4681 ccgaatggca gcgtgccgtc aactcttaca ccatagatgg acggatagat ctcgtcatac
     4741 cggtgcaggt aaagtccgac gacgaggcag gcggcgaaga atgccatcgt cgggagatac
     4801 accttggctg cgcgcgacag cagaccgaag aacggcaaca cgaacatgag tgcgacgacg
     4861 gtcatcgtga tccagctcca cggcgcgatg agccgcagcc gggcccagtg cgtttcctcg
     4921 ccgaggttgc cgtaccatat cacgaggtac tgtccgaacg tcagatagcc ccagaacgcg
     4981 gtgaaggcaa agcacagctt gccgaggtcg tggaagtgga cgtcggtgat catgtcctgg
     5041 cgctggaggt ggctccgcca tgccatcgtg atgagcgtcc acgccgcgat ggcagcgacc
     5101 cacgcaccca tgaagaacca gtaaccgtac agcgtgctct ggaagtgcgg atcgagcgac
     5161 atcgagagat cccacgacat gatgatccag aacagcgcaa atgcaaagac catcgcaacc
     5221 gcgagcttgc cctgacgcga gtgcgtcgag tgcagctccc ggcgctcctc gccgaacccg
     5281 ttccgcatcc gctcgcgaat tccgcgcgcc cacgatgcac cgctctccgg aacaacgccg
     5341 acgtcgagcc gcaccgacgt gtagatgtac cacacgctga tgatcgtctg caccccgaac
     5401 atgatcaggt cgcgcgtgat gaagaacgga acgttgagat actggcgctt ctcctcgatc
     5461 atcagcggat gctgcgccca ggggaagatg tggtcgcgtc cgatggtgag cgacaggcag
     5521 agaatcacga acgcgaccgg aaggaaggcg acgtagcctt ccatgaaccg cacgaccggt
     5581 cgcgaccagc gcgcagtagt gatgcgctgc acggcgacga ccgtcacacc ggcggacgaa
     5641 accgtgctga agaacagcca gttgaagtgc aatgcctgcc acgcacgatc ggcaccgacg
     5701 aacgcgccga agatgaatgt cacagttccg atgacggcga gaatcacgca cgacatct
//
LOCUS       DATIMD010000551         2128 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2248718, whole genome shotgun sequence.
ACCESSION   DATIMD010000551 DATIMD010000000
VERSION     DATIMD010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2248718"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..571)
                     /locus_tag="VLI40_12335"
     CDS             complement(<1..571)
                     /locus_tag="VLI40_12335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HSU98013.1"
                     /translation="MHDTYSSPLSARYASRAMLELWSPHERHLLWRQLWIALAESEME
                     LGIDIPQSAIAEMRAAANDIDFDAAARYEERFRHDVMAHVHTFADAAPSARRFIHLGA
                     TSAFVTDNADLILMRRALTLLRGRAMDVVRALSTFADQWKGEPTLGYTHIQPAQLTTV
                     GKRATLWIQDLVLDIRDIQYRIDSLPLRGV"
     gene            complement(572..1963)
                     /locus_tag="VLI40_12340"
     CDS             complement(572..1963)
                     /locus_tag="VLI40_12340"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HSU98014.1"
                     /translation="MKRMGVVAILVAAIACKGGSSKAQQVTIAQPAANAQVDASRRTA
                     ITAAVARVAPSVVTVQTEAVEHVPADMMEQFFGGNSAERPVAGLGSGFILRKDGVILT
                     NAHVVRGATRISVALRDGTTYPAKLIGVDDVNDLAVLKVDASNLPVAPLGNSSSLIVG
                     EWAIAIGNPYGFVLANTEPSVTVGVVSGVGRNLVAPPPDAGNGAYVDMIQTDAAINPG
                     NSGGPLVDAAGEVIGVNSSIYSPSGGSVGLGFAIPINRASRVADDLLTHGSVRRPWIG
                     VKPAVSESRTPGQRPQRGVTVAAVTPGSPAASAGLRSGDVIVRVATRQIRNAYDWEAE
                     LLELRVGETIPITFQRGGSDRTVDVRIADLPEVNAPRVTVLHEIELTTLTPAIRSERN
                     IRSQSGAYVQNVSPRVSAQIGLAQGDVIVQVNRTRITSAEDAAAALNSGRGVVVMYVE
                     RQGQFYSTEFVTQ"
BASE COUNT          373 a          694 c          664 g          397 t
ORIGIN      
        1 tgacgcctcg cagcggcagc gaatcgatgc ggtactgaat gtccctgatg tcgagtacga
       61 gatcctggat ccatagcgtc gcgcgctttc cgacggttgt cagctgcgcc ggctggatgt
      121 gcgtgtaacc gagcgtcggc tcgcccttcc actgatccgc gaacgtcgag agagcgcgca
      181 ccacatccat cgcgcgtcct cgaagcagcg taagcgcgcg ccgcatcagt atcaggtcag
      241 cgttgtccgt tacgaacgcg ctggtcgcgc cgagatggat gaagcgtcgc gcgctcggag
      301 cggcgtctgc aaaagtgtgt acgtgcgcca tgacgtcgtg cctgaagcgc tcctcatacc
      361 tggcggcggc gtcgaagtcg atgtcgtttg cggcagcgcg catctcggcg atcgccgatt
      421 gcggaatgtc gatcccgagc tccatctccg attccgcgag cgcgatccag agctggcgcc
      481 agagtagatg acgctcgtgc ggcgaccaca gctcgagcat cgcgcgcgac gcgtaccgtg
      541 ccgacagcgg tgacgaatat gtatcgtgca tctattgagt cacgaattcg gtcgaataga
      601 actggccctg ccgttccacg tacataacca ccacacctct cccgctgttg agcgccgccg
      661 cggcatcctc ggcgcttgtg atccgcgttc tgttcacctg aactatcacg tcaccctgcg
      721 caagaccgat ctgcgccgag acgcgcgggc tcacgttctg gacgtatgcg ccggattgac
      781 ttcttatgtt gcgctcggaa cgaatcgccg gcgtcaacgt cgtgagctcg atttcgtgca
      841 gcactgttac ccgtggcgca ttcacttcgg gaagatccgc gatgcgaaca tccacggttc
      901 tgtcggagcc accccgctga aaggtgatcg gaatcgtctc gccgaccctg agctcgagca
      961 gttccgcttc ccagtcgtat gcgttgcgaa tctgccgcgt ggcgacgcgc acgatcacgt
     1021 cgccactgcg gagtccggcc gacgcggccg gtgatccggg agttacagca gctacagtga
     1081 cgccacgctg cgggcgctgg ccgggtgtgc gcgactcgct caccgctggc ttgacgccga
     1141 tccacggtct gcgaacagaa ccgtgtgtga gcagatcatc cgccacacgc gaagcgcgat
     1201 tgatcggaat tgcaaagccg agtccgaccg atccgccgct gggtgaatag atcgagctgt
     1261 tgacgccgat cacttctcca gctgcatcga ccaggggacc gcccgagtta ccgggattga
     1321 tcgccgcatc ggtctgaatc atgtcgacgt acgcgccgtt tccggcgtcg ggcggcggcg
     1381 ctacgaggtt gcggccaacg ccgctcacca cgccgacggt aacgctcggc tccgtattcg
     1441 cgagcacgaa cccgtacgga ttaccgattg cgatcgccca ttcgccaacg atcagtgacg
     1501 aggaattgcc gagcggagcg acgggaaggt tggacgcatc gaccttgagc accgcgagat
     1561 cgttcacgtc gtcaacgccg atgagcttgg cgggatacgt cgtgccatcg cgcaacgcga
     1621 cggagatgcg tgtcgcgccg cgcacgacgt gcgcgttggt gagtatcacg ccgtccttgc
     1681 gcagtatgaa gccggagcca agtccggcga cgggacgctc tgccgagttg ccgccgaaga
     1741 actgctccat catgtcggcc ggcacgtgct ccaccgcttc ggtctgcacg gtcaccacgc
     1801 tcggcgccac gcgtgcaact gcggcggtga tcgccgtccg gcgcgacgca tcgacctgcg
     1861 cgttcgccgc tggctgcgcg atcgttacct gttgtgcctt ggacgatccg cccttgcacg
     1921 cgatcgccgc tacgaggatc gcaaccaccc ccatccgctt catcgcctac atgctcctcg
     1981 gcttgtgacg cttggcgagc gcgctcaggt atctgtcgac gccacggtcg gtgagcgagt
     2041 ggaccatcaa cgacgcgaac agcgccggag tgacgtacgc gacatccgcg ccggccagca
     2101 ggtagttcgt gaatgcggtc gagctctg
//
LOCUS       DATIMD010000552         3081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3117101, whole genome shotgun sequence.
ACCESSION   DATIMD010000552 DATIMD010000000
VERSION     DATIMD010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3081
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3117101"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(246..458)
                     /locus_tag="VLI40_12345"
     CDS             complement(246..458)
                     /locus_tag="VLI40_12345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98015.1"
                     /translation="MIDLRRNLPSWIRAVLATLILIGIGGIVIGRVVPTGTTGHDTAV
                     MLLCGLAGGTASRIWLGGARSCRSGG"
     gene            716..1042
                     /locus_tag="VLI40_12350"
     CDS             716..1042
                     /locus_tag="VLI40_12350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98016.1"
                     /translation="MMTRLNLARLAVVGTLITLALPLASRAEEPGPITPKTASDTLTK
                     LDKAKSERPAPAPKKKLKGRQAAPAQPRSSYGPDQPWETEFYVENDIAGQREIQLALA
                     SFGRHR"
     gene            1208..2308
                     /gene="bioF"
                     /locus_tag="VLI40_12355"
     CDS             1208..2308
                     /gene="bioF"
                     /locus_tag="VLI40_12355"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: protein motif:HMM:TIGR00858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008710 - 8-amino-7-oxononanoate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HSU98017.1"
                     /translation="MRTVMRGEGVELLLDGKRVVDFSSNDYLGLAGDPRIARAAAEAL
                     GTGSTGATAARLISGTQAAHVELEREIARFKGAEAALLFPSGYAANTGTIQAIVGRRD
                     VIYADQLNHASLIDGARLSRAEIRVFPHVDLTALRAMLKADAGNFRRRLIVVDGVFSM
                     DGDMFPLGELVSIAREFQAWTYVDDAHATGVLGANGRGSAEHCGVEGEIDVLMGTLGK
                     AIGTVGAFTCGSRVLIDYLIHRARSFIFTTASPPALAAATLEALRIVSAEPGRRSGLR
                     RNAHYLRKGLRETGHSPMGDDDGYIVPIMLGESERATSVGNALREAGYLVGAVRPPTV
                     PMGQSRLRITVSAAHNTDHIDGLISAIGAVLN"
     gene            2305..>3081
                     /locus_tag="VLI40_12360"
     CDS             2305..>3081
                     /locus_tag="VLI40_12360"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSU98018.1"
                     /translation="MTEQLSDVVGADARHIWHPYTQHLGALPAIHATGASGAFIQTAD
                     GRRIFDAISSWWVTLHGHSHPAIVDAIARQAAMLDQVIFTSFTHEPAALFARDLVAIL
                     PEGLNRVFFSDDGSTAVEVAVKMALQYHANRGSNRSIIVALENAYHGDTFGAMSVSGR
                     GTFTDPFSSLLFDVRRLPDPTTGDTVAALGALLEREGGAVAAIIVEPLLMGAGGMLMY
                     DEATLSALRERARDSDILFIADEVLTGFGRTGPLFACDRAG"
BASE COUNT          568 a          964 c          970 g          579 t
ORIGIN      
        1 cgcacgtcaa gcgcggcgta caggcggtga aagctttggc cactgccccg actcgtacgc
       61 tcgccgacat ccgtaccgca gctacaactg tgctcggtgt cgcctggccg agtatcgagc
      121 agcaatggcg tgacagcatc atgcgctact gaatcttgtc gagatgctga tcgattgcgc
      181 cgatgtgatt cgccggtttc gcgaccggaa tgcggtgcga tgtaacgcga agcgagtctg
      241 cttggctaac caccagagcg gcaggagcgc gctccgccga gccatatccg ggaagccgtt
      301 cctccggcga gaccgcacaa cagcataact gccgtgtcat gaccggtcgt tcctgttggc
      361 accactcgtc cgatgacgat tccgccgatt ccaatgagga tcaacgtggc caacacggct
      421 cgaatccacg atggcaggtt gcggcgaaga tcaatcattt cctccatatt atcgtgtatg
      481 gcagctcggc gcgaatagct cgtagcggag ctgcggctag agccggctag tgcgatcgac
      541 ttggggacta gtgcttgagc tccgcgggcg ggcccgcacg aaatcgaggg ccgtgccgac
      601 agggtagcga ttgcccacgg tcctcatatc cgccccagaa tccgcctctg gccagtcaaa
      661 accggccgca aaacgcaagt ttgtagccaa ctgcggtacc ccgtcatata ttcaaatgat
      721 gactcggctg aacctcgcac ggctggctgt ggtgggtact ctcatcaccc tcgcccttcc
      781 gctcgcttcc cgcgcggaag agccgggccc cattaccccc aagaccgcgt ccgacacgct
      841 gaccaagctg gacaaggcca agtccgagcg ccccgcgcct gcccccaaga agaagttgaa
      901 gggtcgccag gcggcgccgg ctcaacctcg ctcgagctac ggtccagacc agccttggga
      961 gaccgagttc tacgtcgaga acgacatcgc tggccagcgt gagattcagc ttgcgctcgc
     1021 ttcattcggc cggcatcggt aattcagtca gccgcaccag caacggggac ccgatagggt
     1081 cctttttttt gacaggaatc gcaacatcac gccgattgac aacaccgcaa gtccagcgcc
     1141 tctatctcta gacgaggcgc tcgcgcgcga gctgcgcacg atcgagcgcg cgggactcaa
     1201 gcgagtcatg cgaacggtta tgcgcggtga aggcgtcgag ctgctgctgg acggcaagcg
     1261 cgtggtcgac ttctcatcca acgattacct cggcctcgcg ggagatccgc gcattgcgcg
     1321 tgcagcggca gaagccctcg gcaccggcag cactggcgca accgcagcgc ggctcatctc
     1381 gggaacgcag gccgctcacg tcgagctcga gcgcgagatc gcgagattca agggcgcgga
     1441 agccgcgctc ctctttccca gcggttacgc tgccaatact ggaacgatcc aggcgattgt
     1501 cgggcggcgc gacgtcatct acgccgacca gctcaatcac gcgtcgctca tagacggcgc
     1561 gcggctctcg cgcgccgaaa tacgcgtctt tccgcatgtg gacctgacgg cattgcgcgc
     1621 gatgctgaag gccgatgcgg gtaacttccg ccggcggctg atcgtggtcg acggtgtgtt
     1681 ctcgatggac ggcgacatgt ttccgctcgg cgagctcgtt tcgatcgcac gagaattcca
     1741 ggcatggacc tacgtcgacg acgcacatgc taccggtgtg ctgggcgcca atggacgagg
     1801 ctccgcggag cactgcggcg tcgaaggcga gatcgacgtg ctgatgggga ctctcgggaa
     1861 ggcgatcggt acagtgggcg cattcacctg cggatcgcgc gtgctgatcg actatctgat
     1921 ccatcgcgca cgctcgttca tattcacgac agcgtcgcct ccggcccttg ccgcggccac
     1981 gctcgaagct ttgcgcatag tgagcgccga gcccgggcga cggagtggat tgcgtagaaa
     2041 cgcgcattac ctgcgcaaag gattgcgcga gacgggccat tcgccaatgg gtgatgacga
     2101 cggatacatc gtgcccataa tgctgggtga gtcggagcgc gcgacctccg tcggcaacgc
     2161 gttgcgcgaa gctggatatc tcgtgggtgc ggtgcgtccg ccaaccgtcc cgatgggcca
     2221 gtcgcgcctt cgcatcacag tgagcgctgc acacaacacc gatcacatcg acggactgat
     2281 cagtgcgatt ggagcggtgt tgaattgacg gagcagcttt ccgacgtcgt cggtgcggac
     2341 gcgcgccaca tctggcatcc gtacacgcag cacctcggcg cgttgcctgc aattcacgct
     2401 accggcgcat cgggcgcgtt cattcagact gccgacgggc gcagaatatt cgacgcgatc
     2461 tcgtcatggt gggtgactct gcatggtcac tcgcatccgg cgatcgtcga tgcgattgct
     2521 cgacaggccg cgatgctgga tcaggtgatt ttcacatcgt tcacgcacga gcccgcggcg
     2581 ctattcgctc gtgatctcgt cgcgatcctt cccgagggcc tgaaccgcgt tttcttctcg
     2641 gacgacgggt cgaccgcggt cgaagttgcg gtgaagatgg ctctgcagta tcacgcgaat
     2701 cgcggcagca atcggtcgat catagtcgcg ctcgagaatg cgtatcacgg tgacactttc
     2761 ggcgccatga gcgtgagcgg gcgcggcacg ttcaccgatc cgttcagctc gctgctgttc
     2821 gacgtcaggc gccttcccga tccaactaca ggcgacacgg tcgcggcgct cggggcgctg
     2881 ctggagcgtg agggtggtgc ggtcgccgca ataatcgtcg agccgttgct catgggcgcg
     2941 ggtggcatgc tcatgtacga cgaggcgacg ctctcggcgc tgagggaacg cgcgcgtgac
     3001 agtgacattc tcttcatcgc ggatgaagtg ctcaccggat tcggtcgcac gggtccgttg
     3061 ttcgcgtgcg atcgtgccgg t
//
LOCUS       DATIMD010000553         4201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2538817, whole genome shotgun sequence.
ACCESSION   DATIMD010000553 DATIMD010000000
VERSION     DATIMD010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4201
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2538817"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..783
                     /locus_tag="VLI40_12365"
     CDS             <1..783
                     /locus_tag="VLI40_12365"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSU98019.1"
                     /translation="SNGSSIQGVLLLPVGYTAGNKYPLLVEEHGGPTGASDNDFKATS
                     TSPGQVWAGHGWAVLYPDPHGSTGYGAKFMRSNIKDLGGADFRDIMDGVDDLIRLGIA
                     DSSKMAFEGWSYGGYMAAWVVGHTSRFKAARMGAGMSDLASMYGTSEIPGYIGMFEGG
                     MPSAQTRALYTSMSPITYADRVTTPLLILHGASDPRVPPGQAMEFYRALKDRGKTVEL
                     VLYPREQHGFGEYYHLLDRMQRDYAWITRYALGATDKPVTSQ"
     gene            780..2525
                     /locus_tag="VLI40_12370"
     CDS             780..2525
                     /locus_tag="VLI40_12370"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HSU98020.1"
                     /translation="MTSLFRTLRAPQTTTRIAIWAVALSAFAGTSGAQSHSPQFEISF
                     PSAAHAQPITGRVYLFLTTDGSSEPRFQGGSLGLNGPFFGKDVSELRPGATTRIDAST
                     PGFPFSSLDDLAPGDYYVQAVINVYTQFHRADGHTIWAHMDQWEGQQPMVSPGNLVST
                     VQRVHISSAAGPSQATVRIDADKVIPPVQVPADTKWIKHVKIQSKLLTAFWGHPIYLG
                     AVVLLPKDYDEHPDVRYPVDYEQDHFSLAPPYHFQSENPGLVDSLKKGRRAWLINMRQ
                     NEGYQLYRDWTSADFPRMLMVTFLHPTPYFDDSYAVNSANSGPYGDAIMTELIPYIET
                     HFRIIQKPYARVLSGGSTGGWESLALQVQHPKFFGGAWVYYPDPIDFRQWALVDIYRD
                     ESAFSMPGAKWIVPDRPMMRSSDGQVLITERQQGQLESVLGSHGRSAEQQEVWESVYG
                     PVGPDGYPVPLWDKQTGRIDHAVASYMRDHGYDLSYYLQRNWAKIGPDLVGKLHFYVG
                     DMDNFYLNMAVYKLDDFLSHTTNPAYGGSFQYGRPLKGHGFRPTTTGVMLRAMADQIT
                     RNAPPGPDREAWRYR"
     gene            complement(2536..>4201)
                     /locus_tag="VLI40_12375"
     CDS             complement(2536..>4201)
                     /locus_tag="VLI40_12375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutamine synthetase type III"
                     /protein_id="HSU98021.1"
                     /translation="EMTPLLRSSDVLSQKATELLELMGDRSVRRVYTTLGAEQEYFLV
                     DRTLFAMRPDLVMAGRTLIGAAPSRGQQLEDHYFGGIPERVQACIAEVEHELYKLSVP
                     IVTRHNEVAPCQFEMAPMFEETDIAVDHNQIVMATLRRIALRHGLQALLAEKPFAGVN
                     GSGKHCNWSMAVRSDDPALDGVNLLKPGKTPHQNIRFLLFLAAVLQGVNKHAGLLRAA
                     IATSGNEHRLGANEAPPAIISVFMGTMLTRVINEIIEGKSTKSADQQMIGLGVAKLPE
                     IEKDNTDRNRTSPFAFTGQKFEFRAVGSSQSIAFPIVLLNAAVAEAISDITEELREEL
                     KGGERNAKSIDDAALKVVRKAFKASTPVRFEGNNYSGEWVKEAEKRGLLNLRRTPEAL
                     QQLVTNQSRKTLTSLGIFTNEELDSRYHVRLERYTKDMLIELHTLREMVDTFVVPAVL
                     GYVGSLSNTAAQAKAAGITVIPQIGIANKVGATIEELLKHHDNLSAVIAKAESMHDDP
                     GAQAELLTSKGADAMADVRAKCDELELMVSDSEWPLPKYREILFPV"
BASE COUNT          841 a         1312 c         1210 g          838 t
ORIGIN      
        1 agcaacggca gctcgatcca gggagtgctg ctccttccgg tcggatacac agccggaaat
       61 aaatatccgc tgctggtcga ggagcacggc ggaccgaccg gtgcgagtga taacgacttc
      121 aaggcaacca gcacatcgcc aggacaagtc tgggccggcc acggctgggc ggtgctctat
      181 cccgacccgc acggatccac cggttacggc gcgaaattca tgcgctccaa catcaaggat
      241 ctcggcggcg ccgacttccg cgacatcatg gacggagtcg atgacttgat tcgtctcggt
      301 atcgccgact ccagcaagat ggcgttcgag ggatggagtt acggcggcta catggccgcg
      361 tgggtcgtgg gtcacacatc tcgcttcaag gctgcacgaa tgggcgcggg aatgtccgac
      421 ctcgcaagca tgtacggcac cagcgagatt cccggttaca tcggaatgtt cgagggtgga
      481 atgccgagtg cgcagacgcg agcattgtac acttccatgt cgccgatcac atatgcagac
      541 cgtgtgacga cgccgctgct gattctgcac ggtgcgagcg atccgcgtgt tccaccaggg
      601 caggcgatgg aattttaccg cgcgctcaag gatcgcggca aaaccgtgga gctcgtgctc
      661 tatccgcgtg aacagcacgg attcggcgag tactaccacc tgctcgatcg catgcagcgc
      721 gattacgcat ggatcacccg atacgcactc ggcgcaactg ataaaccggt aacgagtcaa
      781 tgacatcgct gtttcgcaca ctgcgcgcgc cgcagacaac cacgcgcatt gccatatggg
      841 ctgtagcgct gagcgcgttc gccggcacgt ccggtgcgca gtcacacagc ccgcaattcg
      901 agatctcctt cccgtcagcg gcccatgcgc aacccatcac tggacgcgtg tatctgtttc
      961 tgacgacgga cggctcatcg gagccaaggt ttcagggcgg ctcgctgggt ctcaacggac
     1021 cgttcttcgg aaaggacgtg agtgagctca ggcctggcgc aaccacgcgg atcgatgcgt
     1081 ccacgccggg attcccattc agtagtctcg atgatctggc gccgggtgac tactacgtgc
     1141 aggcagtgat caacgtgtac acccagttcc atcgcgctga cggccacacc atctgggcgc
     1201 acatggatca gtgggaaggc cagcagccga tggtctctcc cggaaatctc gtgagcaccg
     1261 ttcagcgcgt tcacatctca tccgctgcag gacccagcca ggcgactgtc cgtatcgacg
     1321 ccgataaagt aattccaccg gtgcaggtgc cagccgatac gaagtggatc aaacacgtca
     1381 agatccagag caagttgctg acggcgttct ggggacaccc catctacctc ggcgcagtag
     1441 tccttttgcc taaagactac gatgagcatc cagacgtcag gtatccggtg gactacgagc
     1501 aggaccattt cagtcttgct ccaccatatc acttccagag cgaaaatccc ggtctcgtcg
     1561 attccttgaa gaaaggccgc cgcgcgtggc tcatcaacat gcgacagaac gaaggctatc
     1621 agctgtatcg cgattggacg tcagcggatt ttccgcggat gctgatggtc acgttcctgc
     1681 atccgacgcc gtacttcgac gattcgtacg ccgtcaactc agccaacagc ggcccgtacg
     1741 gcgatgcgat aatgaccgag ctcatcccgt acatcgaaac gcatttcaga attattcaga
     1801 agccgtacgc gcgcgtgctc agtggtggct cgaccggcgg atgggagtcg ctcgctctcc
     1861 aggtccagca tccgaaattc ttcggtggcg cgtgggtcta ctatcccgat ccgatcgact
     1921 tccgtcaatg ggcgctcgtc gacatctaca gggatgaaag cgcgttctcc atgcccggtg
     1981 cgaaatggat cgtgcctgat cgcccgatga tgcgtagctc agatggtcag gtattgatta
     2041 ccgagcgcca gcaaggacag ctcgagtcag tactcggctc gcacggccgc tccgcagagc
     2101 aacaggaagt gtgggaatca gtctatggcc cggtgggacc ggacggatat ccggtcccac
     2161 tctgggacaa gcaaaccggc aggatcgatc acgcggtagc gagctacatg cgcgaccatg
     2221 gctacgatct cagctactac ttgcagcgca actgggcgaa gatcgggccc gatctcgtag
     2281 gcaagctgca cttctacgtc ggcgacatgg acaacttcta cctgaacatg gccgtctaca
     2341 agctcgatga ttttctgagc cacaccacga acccggcata cggcggatca ttccagtatg
     2401 gccggccatt gaaaggtcat ggcttccgtc caacgactac gggagtcatg ctgcgcgcaa
     2461 tggccgacca gataacccgc aatgctccgc ccggtcccga tcgcgaagcg tggcggtatc
     2521 gttgaagcgc gctggttaga ccgggaacag tatctcgcgg tacttcggaa gcggccactc
     2581 gctgtcgctt accatgagct ccagctcatc gcactttgcg cgtacgtcag ccatcgcgtc
     2641 cgcgcccttg ctcgtgagca gctctgcctg cgcacccgga tcgtcgtgca tcgactcagc
     2701 cttcgcaatt acagcggaaa ggttgtcgtg atgcttgagt agctcctcga tcgtcgcgcc
     2761 caccttgttc gcgattccga tctgcggtat gaccgtgatc ccagcggcct tggcctgcgc
     2821 cgcagtgttg gagagcgacc cgacgtagcc cagcactgcg ggtacgacga acgtgtcgac
     2881 catctcgcga agtgtatgga gctcgatcag catgtccttg gtgtagcgct cgagccgcac
     2941 gtgataacgc gaatccagct cctcattggt gaagatgccg agcgatgtga gcgtcttgcg
     3001 cgactgattg gtgacaagct gctgcaacgc ttccggagtc cggcgcagat tcagcaaacc
     3061 acgcttctcg gcttccttca cccactcgcc cgagtagttg ttgccctcga accgaaccgg
     3121 cgtgctcgcc ttgaacgcct tgcgcacgac cttcaacgcg gcgtcgtcga tcgacttcgc
     3181 gttgcgctcg ccacccttca attcttcacg cagctcctcg gtaatgtccg agatcgcctc
     3241 ggcgaccgcg gcattcagca gaacgatggg gaaggcgatg ctctgactcg agccgactgc
     3301 gcggaactcg aacttctgcc cggtgaatgc gaacggtgac gtacgattgc gatcggtgtt
     3361 gtccttctcg atctccggca gcttcgcgac accgagtccg atcatctgct gatcggcgct
     3421 cttggtgctc ttgccttcta tgatctcatt gatgacacgg gtgagcatcg tgcccatgaa
     3481 cacggagatg atcgccggcg gtgcctcatt cgcgccgagc ctgtgctcgt tgccggacgt
     3541 tgcaattgcc gcgcgaagaa gacccgcgtg cttgttgacg ccctgcagca ctgcggcaag
     3601 gaagagcagg aaccgaatgt tctgatgcgg cgtcttgcct ggcttgagca ggttgacgcc
     3661 atcgagcgcc ggatcgtccg accgcactgc catcgaccag ttgcagtgct tgccgcttcc
     3721 gttcacacca gcgaacggct tctccgcgag caaggcctgc aggccgtgac gcagcgcgat
     3781 gcgacgcaac gtcgccatca ctatctgatt gtgatcgacg gctatgtccg tctcctcgaa
     3841 catcggcgcc atctcgaact ggcacggtgc gacttcgtta tgtcgcgtga cgatcggcac
     3901 gctcaacttg tacagctcgt gctccacttc cgcgatgcac gcctgcacgc gctccgggat
     3961 tccgccgaaa tagtggtctt ccaactgctg tccgcgcgat ggcgcggcac cgatcagcgt
     4021 acgcccagcc atcaccagat ccggccgcat cgcgaacaat gtgcggtcaa ccaggaaata
     4081 ttcctgctcc gcgccgagtg tcgtgtagac tcgccgtaca ctccggtcgc ccatcaactc
     4141 gagcagctcg gttgccttct gcgagagcac atcggaactc cgcagcagag gcgtcatctc
     4201 a
//
LOCUS       DATIMD010000554         3094 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5143325, whole genome shotgun sequence.
ACCESSION   DATIMD010000554 DATIMD010000000
VERSION     DATIMD010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3094
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5143325"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..893)
                     /locus_tag="VLI40_12380"
     CDS             complement(<1..893)
                     /locus_tag="VLI40_12380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98022.1"
                     /translation="MILTALLAAISLGGTSINTARASSIDASFLATASFQATAQTAAK
                     SSDSTHSHKARKKSSKATRSHSAADTVPSRKVAPQPAFTVTPLPNSLLPKNRIVVYYG
                     NPLSKKMGVLGEYPEPVMLAKLQQEVHNFQVADPATPVKPGLHLIVSVAQGAPGKNGM
                     YRLRMTDSLIDHWCKLAESKGYLIFLDVQVGHSTVQAELQPLLPYLKRPYVHLALDPE
                     FSMHHASEGVVPGRKVGVMDAAEINYAIKTLADIVKQNNLPPKVLVVHRYTQKMVTNY
                     REIRPVPEVQVVMNMDGFGPP"
     gene            complement(1006..1377)
                     /locus_tag="VLI40_12385"
     CDS             complement(1006..1377)
                     /locus_tag="VLI40_12385"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSU98023.1"
                     /translation="MAHSPAFLALIDSVHSSVPDVTVEQARERLRANPDLKFVDVRED
                     SEWAAGHASGAIHIGKGVIERDVEEKIPDRNAELILYCGGGFRSVLAADALRKMGYTN
                     VSSMAGGWREWKVVGAPTEEP"
     gene            complement(1459..2571)
                     /locus_tag="VLI40_12390"
     CDS             complement(1459..2571)
                     /locus_tag="VLI40_12390"
                     /inference="COORDINATES: protein motif:HMM:NF024884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU98024.1"
                     /translation="MAQLRSSATISVVLWYGLLILVTVVMHLTRETQQSQAHVVLTYL
                     LVVLGGSLSGGRPLGFTLAAAATILISYYFQYPFDTFSLTKPIDAVVLSAFFATSGTT
                     TYLLVRAQEEAAQARARAEEVERLSNEASHAEALRETARFKDILLASVSHDLRTPLTS
                     IKALAQDAADSGDANAAIIVAQTERLSKMVAHLLDMSRLNAGEFPVTIELNTAEDLVG
                     AAVLEMTGATGADRIRVEIDYTAPVLVGMFDFVESLRILVNLLDNALVYSPPTAPVDL
                     SATRVGDWVQLSVADRGPGIPGADSERVFEPFYRHMSTANAVHGTGLGLAISRSLAEA
                     QGGQLIYSERNGGGSVFALRLRAVGYPESAELALEE"
     gene            complement(2589..>3094)
                     /locus_tag="VLI40_12395"
     CDS             complement(2589..>3094)
                     /locus_tag="VLI40_12395"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSU98025.1"
                     /translation="IRAHSLAPIVVLTARHIESDKVALLNAGADDYVTKPFSTSEFAA
                     RVAAQIRRARTARPGTSGAVEADGMSVNFTSRHAHRDGKPVRLTPIEWAILRALTADP
                     GRVYTHQQLFDAVWAREFGDARQYLRVHITNLRRKVERDPTHPRVIITEPGVGYRFGT
                     PLAQELA"
BASE COUNT          590 a          890 c          989 g          625 t
ORIGIN      
        1 catggcggtc cgaagccgtc catgttcata acgacctgaa cttcgggcac cggccggatc
       61 tcccgataat tggtgaccat cttctgcgta tagcgatgaa ctaccagtac cttgggcggg
      121 agattgttct gcttgacgat atcggccagg gtcttgatcg cataattgat ctccgcggcg
      181 tccatcacgc ccaccttgcg ccccggaacg actccttctg atgcgtggtg catcgaaaac
      241 tccgggtcga gcgccagatg cacgtacggc cgcttgagat acggcagcag tggctgaagc
      301 tccgcctgca cggtgctgtg gccgacctgc acgtcgagga agatcagata tcccttgctc
      361 tccgcgagct tgcaccagtg atcgatcagc gaatcggtca tgcggaggcg gtacatcccg
      421 ttcttgccag gcgcgccctg tgccacagaa acgatgagat ggagtccggg ttttaccggc
      481 gttgcggggt cggcaacctg gaagttgtgc acctcctgct gcagcttggc cagcatgacg
      541 ggctcgggat actcgccgag gacgcccatc tttttggaga gcggattgcc gtagtaaacg
      601 acgatccgat tttttggaag cagcgaattg ggtagcggtg tgaccgtgaa cgctggttga
      661 ggcgcgacct tcctgctcgg aacagtgtcg gctgcagaat ggcttcgggt cgccttcgag
      721 cttttcttgc gtgccttgtg gctgtgcgtc gagtcggacg attttgcagc cgtttgcgca
      781 gtggcctgga acgatgccgt cgcaaggaag gaggcgtcga tggaagaggc gcgtgcggta
      841 ttgattgaag tgccgccgag cgagatggcg gcgagcaatg ctgtgagaat cacgataatg
      901 aacggagcgg aacgcggagg atgggtgctg cggcccatca atatagcgag gttatcaggc
      961 agatcacctc ggcatcggaa cggtttttca acgtctcctc ggagcttacg gctcttcggt
     1021 cggtgcgccg acgaccttcc attcacgcca tccaccagcc atggatgaaa cgttggtgta
     1081 gcccattttc ctgagtgcgt ctgctgccag gaccgatcgg aagccgccgc cgcagtagag
     1141 aatcagctca gcgttccggt ccggtatctt ctcttcgaca tcgcgctcga tgacgccctt
     1201 tcctatatgg atcgcgccgg atgcatggcc ggcagcccat tcgctgtctt cgcgaacgtc
     1261 cacgaatttg agatcagggt tggcgcgaag gcgctctcgc gcctgctcca cagttacgtc
     1321 ggggacggac gaatgtaccg agtcaatcag cgcgagaaat gccggtgaat gagccatgcg
     1381 tgaaggtgtg atgggtggaa agggtcaggt acgaagaata catcggcgct gcactgtgcg
     1441 ctggagattg gtgcgccgtc attcttccag agccaattcc gcactttccg gataccctac
     1501 tgcacgtagt ctgagcgcga acacgctacc gccgccgttc cgttcggagt agatgagctg
     1561 gccgccctgc gcctcagcca gcgatctgga tatggcgagg ccgaggccag tgccgtgcac
     1621 tgcattcgcc gtcgacatgt gacggtagaa cggctcgaag acgcgctccg agtccgcccc
     1681 gggaatgcca ggaccgcgat ctgccacact caactgcacc caatcaccaa cacgagtggc
     1741 agacagatcg actggcgcgg tcggcggcga atagaccagt gcattgtcga ggagatttac
     1801 gaggattctg agtgattcca caaagtcgaa catgccaact agtacaggcg cggtgtagtc
     1861 gatctccaca cgtatgcgat cggcgccggt cgctccggtc atctcgagaa ccgcggcgcc
     1921 aacgagatcc tcggcggtat tgagctcgat ggtgaccgga aactcgcccg cgttgagacg
     1981 tgacatgtcc agcagatgcg cgaccatctt gctcaaccgc tcggtctggg caacgatgat
     2041 cgccgcgttc gcgtcaccgg aatcagctgc gtcctgtgcg agcgccttga tgctggtgag
     2101 cggcgtgcga agatcgtgtg acacggaagc gagcaggatg tccttgaaac gcgcagtctc
     2161 acgtagcgct tccgcgtgac tcgcttcatt cgacaatcgc tcgacctcct cggcgcgcgc
     2221 tcgtgcctga gcggcttctt cctgcgcacg cacgagcagg tatgtcgtcg ttccggacgt
     2281 ggcgaagaac gcggaaagaa ccaccgcgtc gatcggcttg gtgagcgaga acgtgtcgaa
     2341 ggggtactgg aagtaatacg atatgagaat tgtcgccgcg gccgcgagtg tgaaaccgag
     2401 cggccggccg ccgctcaggc ttccgccgag tacgaccaga aggtaggtga gaacgacgtg
     2461 cgcctgactc tgctgcgttt cgcgagtcag gtgcatgacg accgtcacaa gtatcagcaa
     2521 accgtaccac agcacgaccg atatcgtcgc gctcgagcga agctgcgcca tgcgctccac
     2581 tttgatcgtt atgccaattc ctgtgccagc ggtgttccga atcgataacc gacgccgggc
     2641 tcggtgatga tgacgcgcgg gtgcgtggga tcgcgctcca ccttgcgacg gaggttggtt
     2701 atgtgtacgc gcagatattg tcgtgcgtca ccgaactctc tggcccagac ggcgtcgaac
     2761 aattgttgat gcgtgtacac gcgtccgggg tccgcggtga gtgcgcgcag gatcgcccat
     2821 tcgattggcg tgagccgcac gggcttgccg tcgcgatgcg cgtggcgtga ggtgaagttc
     2881 accgacatcc cgtccgcttc gacagcgccc gacgtgcccg ggcgtgcagt tcgcgcgcgc
     2941 cggatctgtg cagcgacgcg cgcggcgaat tccgaagtgc tgaacggctt ggtcacgtag
     3001 tcgtcggcgc cggcgttgag gagcgccacc ttgtcggatt cgatgtgacg tgccgtgagc
     3061 acgacgatgg gcgcgagcga gtgagctcga atcg
//
LOCUS       DATIMD010000555         3950 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5433162, whole genome shotgun sequence.
ACCESSION   DATIMD010000555 DATIMD010000000
VERSION     DATIMD010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3950)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3950
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5433162"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1003
                     /locus_tag="VLI40_12400"
     CDS             <1..1003
                     /locus_tag="VLI40_12400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycine dehydrogenase
                     (aminomethyl-transferring)"
                     /protein_id="HSU98026.1"
                     /translation="GNIDVADLRAKAEAHRADLAALMVTYPSTHGVFEETISDICAIV
                     HANGGQVYMDGANMNAMVGLCRPGDVGADVCHLNLHKTFCIPHGGGGPGMGPIGVAAH
                     LAPFLPGHPVIDQPGRESVGAVSEAPWGSASILPISYAYIRMMGPDGLVEATKIAILN
                     ANYMAKRLEPHYPVLYRGQNGTVAHECIIDTRVVKATSGVDVEDIAKRLMDYGFHAPT
                     VSFPVAGTMMIEPTESESKAELDRFCDAMIAIREEIRAIETGTADRADNLLKNAPHTA
                     ARITADEWTHPYPRSQAAYPAPWVRESKFWPATARIESAYGDRNLVCSCPPTDSYVT"
     gene            complement(1065..1448)
                     /gene="gcvH"
                     /locus_tag="VLI40_12405"
     CDS             complement(1065..1448)
                     /gene="gcvH"
                     /locus_tag="VLI40_12405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HSU98027.1"
                     /translation="MANVPGDLLYTAEHEYIRDRGDGTVEVGITDYAQGELGDVVYLE
                     LPKVGSSFAKHDVFGTIEAVKAVSELFAPLGGEVTEVNTRLDAEPAIVNSDPFGEGWM
                     IRMKVKDPAELAALLTPEAYGAQIG"
     gene            complement(1498..2109)
                     /gene="coaE"
                     /locus_tag="VLI40_12410"
     CDS             complement(1498..2109)
                     /gene="coaE"
                     /locus_tag="VLI40_12410"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: protein motif:HMM:TIGR00152.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HSU98028.1"
                     /translation="MGLTGNIASGKSEAATRFAERGATIVDADVLAREAVAIGAPANE
                     RVVARWGKEILAPDGTLDREALRHTVFADPAQLEELNAIVHPGVNKLRRKMVAEARKR
                     GDAVLIYVVPLLFERRLAGEFDQIILVDAPQELRLARLVQLRGVSPEDAANMISAQMP
                     AELKRARANFVIENDGSLERLDEQVDDVWSRLTASATRSSLAI"
     gene            2341..2901
                     /locus_tag="VLI40_12415"
     CDS             2341..2901
                     /locus_tag="VLI40_12415"
                     /inference="COORDINATES: protein motif:HMM:NF023444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspH/FimT family pseudopilin"
                     /protein_id="HSU98029.1"
                     /translation="MPKTVRAGFTLIEMSIVVSIVGILAALALPRIRAAQFDADAAMR
                     TVRIALQQAQRNAIVRQADVMVSFDTAGRRIRVVYDANDNHQADPDETVRWTPLEEAT
                     RFIVPPVGVQLTATASVVGSRIADRDGYPTVYYHRDGAVSSELEIYVSSYRSNESDVR
                     ALHVRQATGRVQSYRYDGSTWKGDGL"
     gene            2898..3287
                     /locus_tag="VLI40_12420"
     CDS             2898..3287
                     /locus_tag="VLI40_12420"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HSU98030.1"
                     /translation="MNNAVRKGMTLIEVMMAMTILATAMLSIASFMGKFARIAAVADV
                     KNTANELASQRLEEIRNAPRYTSIDTLYPGTVALAAPYAGYTRRTQVTHTGGGAGDLY
                     DYRTITVTVSNPRLGTPLRRTTMIAAY"
     gene            3298..>3950
                     /locus_tag="VLI40_12425"
     CDS             3298..>3950
                     /locus_tag="VLI40_12425"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HSU98031.1"
                     /translation="MAVVVRSNAVPRARRVRRGFTLLEVMLSITVLLLLFGMSVPLFR
                     SQVQAMGSTAGRTDAQQNVRFAISTIERQLRVAGAGVSDQQPLLVQADPFAVTFNVDY
                     AARDTAAEGGAFGAVYFDPDLPIGSTMSMTPARQITLPLSSTIWPATAYFSGGPPSAA
                     ETISFWVAPDNSPGSDGRYALFRRVNAMPIDTIARGMQLDPLTPPFTYQLIDDAGVVT
                     "
BASE COUNT          758 a         1243 c         1214 g          735 t
ORIGIN      
        1 gggcaatatc gacgtcgccg atctgcgcgc caaggccgaa gcgcatcgcg ccgatctcgc
       61 cgcgctcatg gtcacgtatc cgtcgacgca tggtgttttc gaggaaacga tttcagacat
      121 ctgcgcgatc gtgcacgcaa acggcggcca ggtgtacatg gatggcgcga acatgaacgc
      181 gatggtcgga ctgtgccgtc cgggtgacgt tggcgccgac gtgtgccacc tcaatctgca
      241 caagaccttc tgcattccgc acggtggtgg tggtccgggc atgggcccga tcggcgtcgc
      301 ggcgcacctc gcgccgtttc tgccgggcca ccccgtcatc gatcagccgg gccgcgagag
      361 cgtcggcgca gtttcagaag caccgtgggg aagtgcgagc attcttccca tatcgtacgc
      421 gtacatccgc atgatgggcc ccgacggact cgtcgaagcg acgaagattg cgatactgaa
      481 cgcgaactac atggcgaagc ggctggagcc gcactatccc gtgttgtatc gcggacagaa
      541 tggcaccgtc gcgcacgagt gcatcatcga cacgcgtgtc gtgaaggcca cgagcggcgt
      601 agacgtagag gacatcgcaa agcggttgat ggattacggc tttcacgcgc cgaccgtctc
      661 attcccggtt gccggaacaa tgatgatcga gccgacggaa agcgagtcga aagccgagct
      721 ggaccgtttc tgcgatgcga tgatcgcgat tcgggaggaa attcgagcga tcgagaccgg
      781 caccgctgat cgcgccgaca atctgctcaa gaacgcaccg cacaccgccg cgcgtattac
      841 ggctgacgag tggacccatc catatccgcg cagccaggca gcctatccgg caccgtgggt
      901 gcgcgagtcc aaattctggc cggctactgc gcgcatcgaa tcagcttacg gggatcgcaa
      961 tctcgtctgc tcctgcccgc cgacggattc gtacgtgacc tgaggcgagc agttgtatgg
     1021 gcaggcccct gtgcctgccc ataccgctcg tcacagatca gacttcagcc tatctgcgcg
     1081 ccgtaagcct caggcgtgag cagtgccgcc agctcggccg gatccttcac cttcatccgg
     1141 atcatccacc cttcgccgaa ggggtcgctg ttcacgatcg cgggttcggc atccagcctg
     1201 gtgttcactt ccgtgacctc accaccaagc ggtgcgaaca gctccgaaac cgccttgacc
     1261 gcttcgatcg tcccgaacac gtcgtgcttc gcgaaggagc tgccgacctt cggcagctcg
     1321 agatagacga cgtcgccaag ctcgccctga gcgtagtcgg tgatgccaac ctcgacggtg
     1381 ccgtcgccgc ggtcgcgtat gtattcatgc tcagccgtat acagcaggtc gccgggaacg
     1441 ttggccacgc gtcaatgcct cgatgtggag cgtaatggga acagcgccgc gcgccgctca
     1501 gatcgccaag ctagaccggg tggcggaggc tgtcaaccgg gaccacacgt cgtcgacctg
     1561 ctcgtcgagt cgctccagtg agccgtcgtt ctcgattacg aagttggctc gcgctcgctt
     1621 gagctcagcc ggcatctgcg cggagatcat gttggcggcg tcttccggtg aaacaccgcg
     1681 cagctgcacc agtcgcgcga gcctcagctc ctgcggtgcg tcgaccagga tgatctggtc
     1741 gaactcgccc gccagccttc gctcgaacag gagcggcacg acgtaaatca gcaccgcgtc
     1801 accgcgctta cgcgcttccg cgaccatctt ccggcgcagc ttgttgacgc cgggatgaac
     1861 tatcgcgttc aactcttcca gctgggcagg atcggcgaag acagtatgcc gcaatgcctc
     1921 gcggtcaagc gtaccgtcgg gtgcaagaat ttccttgccc cagcgagcga cgacgcgctc
     1981 attcgccgga gcgccaatcg cgaccgcttc gcgggccagg acgtccgcgt ctactatggt
     2041 tgcgccccgt tcggcgaacc gggtagcagc ctccgacttc ccgctggcga tgttgccagt
     2101 caaacccacg tatagcattg ctaccaaagt aagaaatggc gcgtacttgt aaacggaaaa
     2161 ctgttggcgc cgcacttcga tgatgtcaca aatctgatgt agctgtccaa gcggcccctg
     2221 actgcgcccg aatgggagtt gggaccgctt cggttaatcc tcggcgcgcc gagactcgca
     2281 cgaggatagg cgcgacagcg ggcaggaagg cttgcccccc agacaaccct ccctctcaac
     2341 atgccgaaaa ccgttcgcgc gggattcacg ctgatcgaga tgtcgatcgt tgtatccatc
     2401 gtcggtatcc tggccgcgct cgcgctgccg cgtattcggg ccgcgcagtt cgatgcagac
     2461 gcggctatgc gcacggtgcg gatcgcgctc cagcaagctc agcgaaacgc aatcgtacgc
     2521 caggccgatg tcatggtgag cttcgacacg gccggcaggc gtattcgggt cgtgtacgat
     2581 gcgaacgata atcatcaggc tgatccggat gagacggtgc gctggacgcc gctggaagag
     2641 gcaacgcgtt tcatcgtccc gccggtggga gtgcaactca ccgccacagc atcggttgtc
     2701 ggaagccgca ttgccgaccg cgatggctat ccgacggttt actaccatcg cgatggtgca
     2761 gtcagcagcg agctggagat atacgtgtcg tcgtatcgga gcaacgagtc ggacgtgcgt
     2821 gcgcttcacg tgcgccaggc aaccggacgc gtacagtcgt atcgctatga cggaagcacc
     2881 tggaaaggag acggactgtg aacaatgctg tccgaaaggg aatgacgctg atcgaagtca
     2941 tgatggcgat gaccattctt gccaccgcga tgctgagcat cgcgagcttc atgggcaagt
     3001 tcgcacgcat cgccgctgta gctgacgtga agaacaccgc gaacgagctc gcctcgcaac
     3061 gtctcgagga aatcaggaac gcccctcgtt acacctcgat cgacaccctg tatccaggga
     3121 ctgtcgcgct tgcggcgccg tatgccggct acacacgcag gacgcaggtc acgcacacgg
     3181 gaggcggagc cggtgacctc tacgactaca ggacgataac cgttaccgtc tccaatccca
     3241 gactcggcac gccgctcagg cgtacgacga tgatagccgc gtactgagat gagtgcgatg
     3301 gctgttgtcg tgagatcgaa cgccgtaccg cgtgcacgac gcgtgcgccg tggattcacg
     3361 ttgctggagg tcatgctgtc gatcaccgtt ctgctgctgc tgttcgggat gagcgtgccg
     3421 ctcttccgct cgcaggtgca agcgatgggc agcaccgccg gacggaccga tgcgcaacag
     3481 aacgttcggt tcgcgatatc cacgatcgag cggcagctgc gtgtcgccgg agccggcgtt
     3541 tccgatcagc agccgttgct cgtgcaggcg gatccgttcg cagtcacgtt caacgtggac
     3601 tatgcggcgc gtgatacagc agcagaaggc ggcgcgttcg gcgcggtata cttcgatccc
     3661 gatcttccca tcggctcgac gatgagcatg acgccggcgc gtcagatcac gctcccgctg
     3721 tcctcgacaa tctggccggc gacggcgtac ttcagtggag ggccgccgag cgctgcggaa
     3781 acgatttcat tctgggttgc gcccgacaac agccccggtt ccgatggtcg ttacgcgctt
     3841 ttccgtcgcg tcaacgcgat gccgatcgac acgattgcgc gtggaatgca gctggatcct
     3901 ctcacaccgc cgttcacgta tcagctcatc gacgatgctg gagtcgtcac
//
LOCUS       DATIMD010000556         5835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4854738, whole genome shotgun sequence.
ACCESSION   DATIMD010000556 DATIMD010000000
VERSION     DATIMD010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5835
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4854738"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..567
                     /gene="mltG"
                     /locus_tag="VLI40_12430"
     CDS             <1..567
                     /gene="mltG"
                     /locus_tag="VLI40_12430"
                     /inference="COORDINATES: protein motif:HMM:TIGR00247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HSU98032.1"
                     /translation="GYLFPDTYVFAPGTTAREAVAEMVKRFEREWKPAYDTQATALGH
                     SRHEIVTMASIVEKEARLPEERPVIAAVYYNRLKFNMPLQADPTVQYALGRHTERVLY
                     RDLTVDSPYNTYLHPGLPPGPIASPGGASLRAALAPAKVPFLYFVAAPDGHHEFRETM
                     AGHEEAKRAVRAERNVDSAPKAKKRNAR"
     gene            complement(596..1414)
                     /locus_tag="VLI40_12435"
     CDS             complement(596..1414)
                     /locus_tag="VLI40_12435"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HSU98033.1"
                     /translation="MKQPSATAREIATLLGAAVPATAIALYRRHGTLEKFERLGAAAL
                     ETLLNAIDANDPVTGAHARRVARYALVLVDAMGGDEHESRIVERVALFHDIGKIHEAL
                     FDVIHDHSKLDRRERREIRTHPDRGAKVLEPLSAFYPDLPRGVVAHHERWNGSGYPRG
                     LRKSAIPLSSRIVAIADTFDAITHSRRYHAGRSVTVALEVIRDGRGTLFDPDLVDLFL
                     APPVIASVRAEMRAASRLERAPERRKRAQRGERVDAPDVSFRWRDTAPRQSRSR"
     gene            1454..2635
                     /locus_tag="VLI40_12440"
     CDS             1454..2635
                     /locus_tag="VLI40_12440"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF022137.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HSU98034.1"
                     /translation="MPSIQHRPVAAVSARGARRWDSGHPWIFRSDVVSPPNCDAGVVE
                     VHDQRGRPLGVALWSPRSEISLRLLDRGPGATIDRAWWTQRIGAAAARRSTLEGRTNA
                     WRIVHGEGDGLPSLVVDRYGDYIVTQLSSAGVEACRADIVAALTDLFTPAGILARNDA
                     GSREREGLPRETVLLYGDVPQEIEVNEYGVKYLAAPWTGQKTGAFIDQRENRHLIGQL
                     ARGTALDCFSYHGSFALHVARNADRVTALDASGPALERAAENAQRNGLHNIDFVVADA
                     FEFLRERERDGTRYDTIVLDPPAFAKNKPSLPGAIRGYKDVNMRAMRLLAPGGLLFTA
                     SCSFHLTRPLFLDMLRAAAVDSGRRIILRELTGQPIDHPELLTVPETGYLKGALVEAA
                     S"
     gene            2764..3537
                     /locus_tag="VLI40_12445"
     CDS             2764..3537
                     /locus_tag="VLI40_12445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98035.1"
                     /translation="MRMSNRPQRSLRHEYQLYVENEIETYKESLPRRALLKLGDEAVG
                     ALRDEQQLALTELVVWEEVDRIIFKRLRLVSYETWRRKRLKDQRERQRPEHWGFSPDC
                     ALAREIRPPAESNVLVSGDDNERVACYLAAHGYEVFAVGSERGVVQRIVNAAEEAGLI
                     DRVHGYIADLREWSREVELSAVVCSQSAFSGLSPEERREVIGLLQEVTRDGGVHLVSA
                     MGHDESSMHELSAQYRGWQISVELHGSVPASFVARKGAA"
     gene            3764..3913
                     /locus_tag="VLI40_12450"
     CDS             3764..3913
                     /locus_tag="VLI40_12450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98036.1"
                     /translation="MTKNVDTKRSDEPLGIIISRGSREEPTPIFSTYVWGPAPDPADG
                     ASKAA"
     gene            complement(3995..4342)
                     /locus_tag="VLI40_12455"
     CDS             complement(3995..4342)
                     /locus_tag="VLI40_12455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98037.1"
                     /translation="MAAAKKGGRKKAGARKKTARKGGARKGARKGAARKKTTRKKTAR
                     KSTARKGSARKKSAGRKKTTRKSAARKSAGRKKTARKGAARKKTARKSSRRKSSSRRG
                     AGGAGAAGAAVTM"
     gene            4588..5616
                     /gene="tdh"
                     /locus_tag="VLI40_12460"
     CDS             4588..5616
                     /gene="tdh"
                     /locus_tag="VLI40_12460"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008743 - L-threonine 3-dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006567 - threonine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HSU98038.1"
                     /translation="MKALVKAVAGPGFTMRDVPIPEIRDDEVLIKVRRAGVCGTDVHI
                     YDWDDWAKGRCHPPFTVGHEFSGDVVSVGKLVTDVHEGDRVTAEGHIVDGRCLLCRTG
                     NSHVCPYTKIIGVDRDGCFAEYIAMPSTNVWHLDDSTPYEIGGIMDPMGNAFHTALTA
                     DIPGSVVLITGCGPIGIFAVGICKAAGASRIIASDVNETRLALAKQMGAHDVVHPAEA
                     EAAVKAATDGLGADVVLEMSGVPSAIHQAFGLVRVGGRVQMLGIPSKPIDVNFANEVI
                     FKGITIYGVVGRKMYDTWIQMTRFLRSGEFDPTPVITHRFPLADFDAAIAAIKSGHAG
                     KVVFEIAD"
BASE COUNT         1078 a         1775 c         1862 g         1120 t
ORIGIN      
        1 ggctatctgt tccccgatac gtacgtgttc gctcctggta ctaccgcgcg cgaggcggtc
       61 gcggagatgg tgaagcgctt cgagcgcgaa tggaagccgg cgtacgacac gcaggccacc
      121 gcactgggcc acagccggca tgagatcgtg acgatggcat cgatagtcga gaaggaggcg
      181 cggcttccgg aagagcgtcc cgtaatcgca gcggtttact acaaccgcct caagttcaac
      241 atgccattgc aggccgaccc gacggtgcag tacgcactcg gcaggcacac ggagcgcgtg
      301 ctgtaccgcg atctgactgt cgactcgccg tacaacacat atctccatcc gggattgccg
      361 cccggcccta tcgcctcacc cggcggtgcg agcctgcgtg cggcgctcgc tccggcaaag
      421 gtgccgttcc tttacttcgt cgcggcgccg gacgggcatc atgagttccg cgaaacgatg
      481 gctggtcatg aagaggccaa gcgcgcagta cgggcggagc gaaatgtgga cagcgcgccg
      541 aaggcgaaga agcgcaacgc gcgatagcgg tagcggtacg aacttcgtcc gattcctatc
      601 tgctgcgtga ttgccgcggc gcggtgtctc gccaccggaa gctgacgtcc ggcgcatcga
      661 cccgctcacc gcgctgggcg cgcttacgac gctccggggc gcgctccagt ctggacgccg
      721 cgcgcatttc ggcgcgcaca ctcgcaatga caggcggcgc gaggaacagg tcgaccaggt
      781 ccggatcgaa tagtgtgccg cggccgtcgc gaatcacttc tagtgccact gtcacacttc
      841 tcccggcatg gtagcggcgt gaatgcgtga tcgcgtcgaa cgtgtcggcg atggcaacga
      901 ttcgcgacga taacggaatc gcgctcttcc tgaggccgcg cggatagccg gagccattcc
      961 atcgctcatg gtgcgcgacg acgcccctgg gcagatccgg gtagaacgca gagagcggct
     1021 cgaggacctt cgcaccgcgg tcaggatggg tgcgaatctc tctgcgctcg cggcgatcga
     1081 gcttgctgtg atcgtggatc acgtcgaaaa gagcttcatg aatctttccg atgtcatgga
     1141 acagcgcaac gcgctcgacg atgcgtgact cgtgctcgtc cccgcccatc gcatcgacaa
     1201 ggacgagcgc atatcgcgcg acgcgccgcg cgtgcgcacc ggtaacggga tcgttggcgt
     1261 cgatcgcatt gagcagagtc tcgagagcgg cggcgccgag ccgctcgaat ttctcgagtg
     1321 ttccgtgtct tctgtacaac gcgatggcgg tggccggaac ggcggcgcca agcagcgtcg
     1381 cgatctctcg agctgtggct gatggttgtt tcatggatgc ggctcctgac gcaagaatca
     1441 tgtactttcc ggcatgccgt caattcaaca ccgcccggtc gcggcagttt cagcgcgtgg
     1501 cgctcggcga tgggactccg gtcatccatg gattttcagg agcgacgtcg tctcgccacc
     1561 gaactgcgac gccggcgtcg tcgaagtaca cgaccagcgc ggcagaccac tgggtgtggc
     1621 gctgtggagt ccacggtccg agatctcgct cagactgctc gaccgtggtc cgggcgcaac
     1681 gatcgatcga gcatggtgga cgcaacgtat aggggccgcg gccgcgcgcc gatcgacgct
     1741 ggagggtcgc acaaatgcgt ggcgcatcgt acatggcgag ggcgatggtc ttccgtcact
     1801 cgttgtggac cggtatggcg attacatcgt gacgcagctc tccagcgccg gcgtcgaagc
     1861 gtgcagagcg gacatcgtcg ctgcgctcac tgatctattt acgccggccg gaattctggc
     1921 gcggaacgat gcaggctcgc gcgagcgcga gggattgccg agggaaacgg tgctcctgta
     1981 cggcgacgtc ccgcaggaga tcgaagtgaa tgaatacggc gtcaagtatc tggcggcgcc
     2041 atggacggga cagaagactg gtgcgttcat cgaccagcgc gagaacagac acctgatcgg
     2101 ccagttggcg cgcggcaccg cgctcgactg tttcagctat cacggctcct ttgcgctgca
     2161 cgtggcacgc aacgctgacc gggtcaccgc actggatgcg tcgggtccgg cgctggaacg
     2221 agctgccgag aatgcccagc ggaacggact tcacaacatt gatttcgtcg tcgccgacgc
     2281 gttcgagttt ctccgtgaga gggagcgtga cggcacacgc tacgacacca ttgtcctgga
     2341 tccgccggcg tttgcgaaga acaagccttc gctacccggt gcgatccgcg gttacaagga
     2401 cgtcaacatg cgagcgatgc gactcctcgc gccaggcggt ctattgttca cggcgagctg
     2461 cagctttcat ctcacgagac cgttgttcct cgacatgctg cgcgcggccg ccgtcgacag
     2521 cggccgtcga atcattctgc gcgagttgac cggacagccg atcgatcacc cggagctgct
     2581 gaccgttccg gaaaccggct acctgaaagg cgcgctggtc gaagcggcga gctgagccag
     2641 gcgctcgggc cgcctgctcg tcagctcgac tgtgtacgat cgccgggact gcgtgcggtg
     2701 ccgggattca gacatcctgg cctgatcgcc ccttgcgcac cgatctcccg actctagctt
     2761 ccagtgcgca tgtccaaccg gccgcagaga tctctccgtc acgaatacca gctctacgtc
     2821 gagaatgaaa tcgagacgta caaggagtcg ctgccccgtc gcgcgctgct caagctcgga
     2881 gacgaagcgg tgggcgcatt gcgtgacgaa cagcagctcg cgctgaccga gctggtcgtc
     2941 tgggaagaag tcgaccggat catcttcaag cgactgcggc tcgtcagcta cgagacgtgg
     3001 cggcgcaagc gactcaagga tcagagagag cggcagcgtc cggagcactg gggattctct
     3061 cccgactgtg cacttgcgcg cgaaatccgt ccgcccgccg agtcgaacgt acttgtcagc
     3121 ggcgacgata acgagcgcgt cgcatgctac ctggccgcgc atggctacga agtattcgct
     3181 gtaggcagcg agcgtggcgt ggttcagcgc atcgtaaacg ccgctgagga agcgggtctg
     3241 atcgatcgtg tgcacggcta catagccgac ctgcgcgagt ggtcgcgcga agtcgagctg
     3301 agtgccgtgg tgtgttcaca gagcgccttc agcggactct cgccggagga gcgtcgcgag
     3361 gtgatcggcc tgctgcagga agtgacgcgc gatggtggcg tgcacctggt cagcgcgatg
     3421 gggcacgacg agtcgtccat gcatgagctt tccgcgcagt atcgcggctg gcagatctcg
     3481 gttgagttgc atggcagcgt tccggcaagc tttgtcgcga gaaagggtgc cgcgtagcga
     3541 tgtgacgcag tccgcagtga tgcaaaacgc ccgtgtcaat ttgacacggg cgtttctatt
     3601 tgtgcgtgtc cattcgtatc gcatggaacg ttcgcgatgc ggcgcgtgcg tccggcactc
     3661 gctcctaaat cgttgtggct gcatgacttg ccgcgcggag cgggacgcgg gtgaggttgg
     3721 cccccaccgt gctttgaaga ggtgcatgaa ggaggtaacc aacatgacca agaacgtaga
     3781 tacgaagcgc tcggacgagc cgctcggcat catcatatcg cggggttcac gtgaagagcc
     3841 cacgccaatc ttctcaacct atgtgtgggg tccggcaccg gatccggcgg acggcgcgtc
     3901 gaaggcggcg tagctcgtcg atgcagtaag acaggagaac tacaggcaac aaaaaagccg
     3961 gctcatcgcc ggcctttttg tttggtgcaa ctgcttacat cgtgactgct gcgcccgcgg
     4021 cgccggcgcc accagcgccg cgacgagagc tggacttacg gcgagagctc ttgcgcgcgg
     4081 tcttcttgcg cgctgcaccc ttgcgggcgg tcttcttacg gccggcgctc ttccgagccg
     4141 cgctcttgcg ggtggtcttc ttacggccgg cgctcttctt acgcgcgctg cccttgcggg
     4201 ccgtgctctt gcgagcggtt ttcttgcgcg tggtcttctt gcgcgctgcg cccttgcggg
     4261 ctcccttgcg cgcgccgccc ttgcgagcgg ttttcttgcg agcacctgct ttcttacgac
     4321 cacccttctt cgctgctgcc atgattgcat ctcctatcgg agttcacctt cccggcgttc
     4381 ccccggtggg ccgcctgggc acagcacgcg gactgatgct gctcgcccgc gccgttacga
     4441 attcagcgca tttcgcgcaa tacgaattcg taactacaag agaatatacg gatcgtgtat
     4501 ttgcaaggca atactttagt tacagatttc ggcatcaccg ccagatcacc actcgagtac
     4561 cactcaccat gtttcggagt tgaacgcgtg aaagcgcttg tcaaagcagt cgcaggtccg
     4621 ggtttcacca tgcgcgatgt ccccatcccg gagatacgcg acgacgaagt gctgatcaaa
     4681 gttcggcgag ctggtgtgtg cggcacggac gtgcatatct acgattggga cgattgggca
     4741 aagggtcgtt gtcatccgcc gttcaccgtc ggacacgaat tctccggcga cgttgttagt
     4801 gtcggcaagt tggtcacaga cgttcacgag ggagatcggg taactgccga gggacacatc
     4861 gtcgatggcc gttgcctgct ctgccgcact ggtaattcgc acgtctgtcc ctatacgaaa
     4921 atcatcggcg tcgaccggga cgggtgcttc gcggaataca tcgcgatgcc ttcgacgaac
     4981 gtctggcacc tcgacgattc cacgccgtac gagatcggtg gaatcatgga tcccatgggg
     5041 aatgcgttcc acacggcgct caccgcggac attcccggat cggttgtgct catcaccgga
     5101 tgtggtccga tcggcatctt cgcggtggga atctgcaagg ctgccggcgc atcgcggatc
     5161 atcgcatccg acgtgaacga gactcgtctg gcactcgcga aacagatggg cgcgcacgac
     5221 gtggtccatc ccgccgaagc tgaagcagcg gtcaaggcgg cgaccgacgg actcggcgcg
     5281 gacgtcgttc tcgagatgtc gggcgtgcca tccgcgatcc atcaggcctt tggactcgtg
     5341 cgcgtcggcg gcagggttca gatgctcggc atcccgtcaa agccgatcga cgtgaacttt
     5401 gcgaacgagg tgatcttcaa gggaatcacg atctacggag tggtgggacg gaagatgtac
     5461 gacacctgga tccagatgac gcgcttcctc cgctccggcg agttcgatcc gactccggtc
     5521 atcacgcaca gattcccgct cgccgatttc gacgccgcga tcgccgcgat caaatccgga
     5581 catgcgggca aggtcgtttt cgagatcgcg gactgaaagg gcgacgcatg cgtcgccctt
     5641 ggctgctatc cgctccagct tgttggggcg acgcatgcgt cgcccctcct tccaatccag
     5701 gtgatataaa atgatcaaca agaattttgt ctcgtccctc caggcatcca tccagcagct
     5761 caaggacgag aaggtctaca agcaactgaa ctatctggaa tcgccgcagt cggcgcacgt
     5821 acagatggaa ggccg
//
LOCUS       DATIMD010000557         1947 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_228824, whole genome shotgun sequence.
ACCESSION   DATIMD010000557 DATIMD010000000
VERSION     DATIMD010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1947
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228824"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1127
                     /locus_tag="VLI40_12465"
     CDS             <1..1127
                     /locus_tag="VLI40_12465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98039.1"
                     /translation="VVRADPVRRGLLYAGTETGAYVSFDDGQKWESLQANLPVVPVTD
                     LQIRNGDLVASTEGRAFWIMDDISPLQQRAESLPANESHIFNPRPAYLTRWGSTNAQE
                     AGANPPSGAIIYYDIAAGTDSTKVKLELVDAAGATVRTFTSKPKPDDANSAISGKPGM
                     HRMVWDLQSARLDAPKGLTFFGSTSGSGVTPGQYTARLTANGKTLTAPLEVRQDPRVH
                     LTAAQLAEQSQTMRTITDRANAIFRDAKRLDDVRDQVKTIVSHAGDLPDSVQVSSAGK
                     RLAARLDSLSIELVQPQHTNGQDIIGFPNGVVDDWLYLAGNIDDSYMPVTGGDKQRLA
                     DLQQQWSAVQSRIDNLLGTEVSAFNTMLGGKAAVIVPKAR"
     gene            1260..1883
                     /locus_tag="VLI40_12470"
     CDS             1260..1883
                     /locus_tag="VLI40_12470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98040.1"
                     /translation="MLQAGVDTFYMTKVDSAGHSDTLGREVQTLEQAALGSRSVWLQA
                     YQYLGKKGEFTSDSLTMDLTTLLPIAETRYNADGREQVRYDGTSIRTALRLQSGSEIR
                     DTTISAPVYSSSTTDAIARAFPSTIGDRVHMLLFSPFPAPFKIGAADVQNISSEVVPG
                     RAGRPEECWVVRVDMGGGFTRFWVNKATHEVARIQSGEGSRAITFIR"
BASE COUNT          418 a          584 c          566 g          379 t
ORIGIN      
        1 gcgttgtgcg cgcggatccc gtacgacgcg ggctgctcta tgccggcacg gagaccggag
       61 cctacgtctc attcgacgat ggacagaagt gggaaagtct gcaggccaat cttccggtgg
      121 tcccggtcac cgatcttcag atccgcaacg gcgatctcgt tgcgtccacc gaagggcgcg
      181 cattctggat catggacgac atttctccac tccagcagcg cgcggaatca ctccctgcaa
      241 acgaatcgca catcttcaat cctcgacccg cgtatctcac gcgctgggga tcgacaaacg
      301 cacaggaggc cggcgccaac ccgccgagcg gcgcaattat ttattacgac atcgccgccg
      361 gaaccgattc gacaaaggtg aagctcgagc tggtcgacgc agctggtgct accgttcgca
      421 cgttcacgag caagccgaag ccggatgatg ccaacagcgc catttccggc aagcccggaa
      481 tgcaccgcat ggtgtgggat ctccagtccg cacggctgga tgcgccgaag ggactcacct
      541 tcttcggatc gacgtcggga tcaggtgtca cgccgggaca gtacaccgcg cgactcaccg
      601 cgaatggaaa gacgcttacc gctccactcg aagtgcgaca ggatccgcgt gttcacctga
      661 ccgctgctca gctcgccgag cagagtcaga cgatgcgtac catcaccgat cgcgcaaacg
      721 cgatcttccg cgatgcaaag cggctcgacg acgttcgcga tcaggtcaag accatcgtat
      781 cgcacgcggg tgatcttcca gacagtgtgc aggtgtcgtc tgcgggcaag cgcctcgccg
      841 cgcgcctcga ttcgctcagc atcgagctcg tgcagccgca acacaccaat ggacaggaca
      901 tcatcggctt cccgaacggt gtggtggacg actggctgta tctggctggc aacatcgacg
      961 actcgtacat gccggtgacc ggtggcgaca agcaacgcct cgccgacctt caacagcaat
     1021 ggtcggcggt gcaatcgcgc atcgacaacc tgcttggcac tgaggtcagt gcgttcaaca
     1081 cgatgctcgg tggcaaggct gcggtgatcg tgccgaaggc acggtaagcc ctttaagcgt
     1141 acctgatcat gtcacggatg gcggccgttc gctggatttg cgcgagcggc ctcatcacag
     1201 cgaccatcgt tgcggggtgt gcaaaatccg ctcgtgtcgc gcaagttctg gatggacgat
     1261 tgctacaagc cggcgttgat accttctaca tgacaaaggt ggattcagca gggcattccg
     1321 atacgctggg ccgggaggta cagacgctgg aacaagcagc acttggctcg cgcagcgttt
     1381 ggctccaggc gtatcagtat ctcgggaaga aaggagagtt cacatccgat tcactgacga
     1441 tggatctgac aacgctattg ccgatcgctg agacgcgtta caacgcagat ggtagagagc
     1501 aggtgcgata tgacggtaca tctatccgga ctgcgctcag attgcaatcc ggatccgaga
     1561 tacgcgatac cacaatttcc gcacccgtat attcgtcatc caccaccgac gccatcgcac
     1621 gtgcgtttcc gtcaacgata ggggatcgag tgcacatgct tctcttctct ccattccctg
     1681 caccgttcaa gatcggtgct gcggacgttc aaaacatctc gtccgaggtc gtgccaggac
     1741 gagccggtcg gccggaggag tgttgggtcg tccgcgttga tatgggcggc gggtttacca
     1801 ggttttgggt gaacaaggcc actcacgagg tagcgcgaat acaatccggt gaagggagtc
     1861 gcgccataac attcattcgc taacccgtca gattcgaacg attgttctac tcgctcagct
     1921 caacaaattc acgctctcgc gcgatat
//
LOCUS       DATIMD010000558         3765 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5719426, whole genome shotgun sequence.
ACCESSION   DATIMD010000558 DATIMD010000000
VERSION     DATIMD010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3765
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5719426"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1160
                     /gene="cheB"
                     /locus_tag="VLI40_12475"
     CDS             <1..1160
                     /gene="cheB"
                     /locus_tag="VLI40_12475"
                     /EC_number="3.1.1.61"
                     /inference="COORDINATES: protein motif:HMM:NF001965.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="chemotaxis-specific protein-glutamate
                     methyltransferase CheB"
                     /protein_id="HSU98041.1"
                     /translation="RSGGPARAHLPQAVMTRVVSGVRGVLVVDDSAFMRKLIAEMIDA
                     HPDFRVIGFARDGVDAMTQVGRLDPDIITLDLEMPRLDGLRVLRRIMTESPRPVVVLS
                     AGGAQYGDATLRALELGAVDFVRKPSGPVSLDLPIVRERLIAALGAAARATLAPPPAV
                     VTDREGNAATARSAQGSSPEPARTYVAAAQLIVIASSTGGPRALAEIVPQLPAGLPAA
                     VVIAQHLPSEFTAALADRLARASRICVREAEDGMPLSAGVVYIARGGVNTSITGAAGI
                     AALTQHSVEPRSGATPCADVLFDSAAEIFGAACTGVVLTGMGRDGAAGLRKIRSSGGR
                     AIVQDEASSAIYGMPRAAVLEAGADRVVSLSMMASAIIGMVPEERLEWLTA"
     gene            1145..2017
                     /locus_tag="VLI40_12480"
     CDS             1145..2017
                     /locus_tag="VLI40_12480"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSU98042.1"
                     /translation="MADSVADLRITFERLKQEIESRQMRDDPALKASLMDVYRAVDGS
                     LGQLTRLKDDIRDLVEKWKARRNASPAMAPQFAGARPVVHEDHIGASTFLERGWSKIS
                     LGDYEGAEEALSRALELAPTNTEGQSLLGWAQMLQDKLDAALMNFQYVLGREPANALA
                     RINVGYICLKKGIFGEAIEHLSKALRQDEDARAKLYANFYLGLVYTEREMYEDAQIFF
                     ERSITLGPNLVEAYFELGHALWLAGERSRAVAVWKRGANVNKFNPWSVKCAEMAATAD
                     RGETPRRAWLSRGE"
     gene            2111..2314
                     /locus_tag="VLI40_12485"
     CDS             2111..2314
                     /locus_tag="VLI40_12485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98043.1"
                     /translation="MPKETINMANATVPADSPAIRRFMWWGLAAITLLAGYADLWRGG
                     ETLAPVLLVLGYCVLIPVAILKR"
     gene            2359..2432
                     /locus_tag="VLI40_12490"
     tRNA            2359..2432
                     /locus_tag="VLI40_12490"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2393..2395,aa:Val,seq:tac)
     gene            2511..>3765
                     /locus_tag="VLI40_12495"
     CDS             2511..>3765
                     /locus_tag="VLI40_12495"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSU98044.1"
                     /translation="MNARFSLALAALALAGTAPVHAQEAKARITVMTFQSQEKGTGAK
                     AADELRNQLKDKFDQKDVYVLPTKDVNNTLEQSGFSASEPLAPNDEKALANLLRADEY
                     ITGSVDKAPTGAYTVNARLVLARDNTLSQALPPASNNKIGDAMDAVSKSVRDAMKQLD
                     GEKECINKARAGDVAGALAAANKGIAAYPQATLARLCAANVQYSRYQKATTHADSVAL
                     ADSVLAVTRVIAQQDPKSVAALKFNTELYKVIGDSAQSRATLLALIRADPTNDKLISQ
                     VVNELAGSGHAKEAEPLVKELLDRSPGDPQLLRTAFLVYLAAQDWQQAVTTGPELIRA
                     DTAAADSSYFTRMAAAYMSMNQAADSAQAITVLQAGVQKYPTNGDLLLSLASALRKAN
                     RAPEAVAVLKRAIAANPNNPQALLLL"
BASE COUNT          701 a         1165 c         1199 g          700 t
ORIGIN      
        1 ctcgttccgg tggacctgcg cgagcgcatc taccgcaagc ggttatgacg agggttgttt
       61 cgggcgtgcg cggcgttctc gtcgtcgatg acagcgcatt catgcgaaag ctgatcgcgg
      121 agatgatcga cgcgcatccc gatttccgtg tgatcggctt cgcgcgcgat ggtgtcgacg
      181 caatgacaca ggtgggacgg ctcgacccgg acatcatcac actcgatctc gagatgccca
      241 gactcgatgg gctgcgagtg ctgcgtcgca tcatgacgga gtcgccgcgt ccagtcgtag
      301 tgctgagcgc gggcggtgct cagtacggtg atgccacgct gcgtgcgctc gagctcggtg
      361 ccgtcgactt cgtgcgcaag ccttccggac ccgtgagtct cgatctgccg attgttcgcg
      421 agcgcctgat agcggctctc ggcgccgcgg cccgcgcaac gcttgcgccg ccaccggctg
      481 tcgtcaccga ccgcgaaggc aacgctgcaa cggcgcggtc cgcacagggg tcatcaccgg
      541 agcccgcgcg cacttacgtc gccgcggcgc agttgatcgt catcgcgtcg tcgacgggcg
      601 gcccgcgtgc gcttgccgaa atcgtaccgc agctcccagc tggtctgccg gccgcggtcg
      661 tgatcgcgca acatctgccg tcggagttca ccgctgcgct ggctgaccgc cttgcgcgcg
      721 ccagccggat ctgtgtgcgt gaagccgagg atgggatgcc tctttcggcg ggggtggtgt
      781 atatagcgcg tggcggcgtc aataccagca ttaccggtgc cgctggtatc gccgcgctga
      841 ctcagcattc ggtcgagccg cgctccggtg ccacaccctg cgccgacgtc ctgttcgact
      901 cggcggcaga gatattcggc gcggcgtgca ccggtgtcgt gcttaccgga atgggtcgcg
      961 acggagcggc tggcctgcga aagatcagat cgagcggcgg acgcgcaatc gtccaggatg
     1021 aagcgtcctc cgctatatat ggaatgccgc gggcggccgt gctggaagcc ggagcggatc
     1081 gcgtcgtatc actgtccatg atggcgagtg cgataatcgg aatggtccct gaggagcgac
     1141 tggaatggct gacagcgtag ccgatcttcg gatcaccttc gagcggttga agcaggagat
     1201 cgaatcgcgc cagatgcgcg acgatcctgc gctcaaggcg tcgctgatgg atgtgtatcg
     1261 tgcggtcgat ggatcgctcg ggcaactcac gcgcttgaag gatgacattc gcgatctcgt
     1321 ggagaagtgg aaggcgcggc ggaacgcatc gcccgccatg gcaccgcagt tcgccggtgc
     1381 gcgcccggta gttcacgaag atcacatcgg cgcgtcgacg ttcctcgagc gcggctggtc
     1441 caagatctcg ctcggcgatt acgaaggagc ggaagaggcg ttgtcgcgcg cgctggagct
     1501 ggctcctacc aataccgagg gacagtcact gctcgggtgg gcgcagatgc ttcaggacaa
     1561 gctcgacgcc gcgttgatga acttccagta cgtgctcggc cgcgagccgg ccaacgcgct
     1621 cgctcgaatc aatgtcggtt acatctgcct caagaaggga atcttcggcg aggcgatcga
     1681 gcacctgtcg aaggcgctgc gccaggacga ggatgcacgc gcgaagctgt acgcgaattt
     1741 ttatcttggg ctcgtttaca ccgagcgcga aatgtacgag gacgcgcaga tattcttcga
     1801 gcgttccatc acgctcgggc cgaacctcgt cgaggcgtac ttcgagctgg gccacgctct
     1861 gtggctcgcg ggcgagcgtt cacgcgcggt cgccgtgtgg aagcgaggcg caaatgtgaa
     1921 caaattcaat ccctggagcg tgaagtgcgc cgaaatggcc gcgaccgctg acagaggaga
     1981 aacaccgcgg cgggcgtggc tgtcgcgagg ggaatagcag ggtcgcggga ctgactgttc
     2041 aattaacaac agattaaggt aggtgctcta gcttgacacc cgccgcccgc ggtccgtaca
     2101 cttcgcgtct atgccgaaag aaaccatcaa catggcaaac gcgaccgttc ctgcggatag
     2161 cccggccatt cgcagattca tgtggtgggg gctcgcggcc ataacgctcc tcgcaggcta
     2221 cgccgacctc tggcgtggcg gagagactct tgcccccgtg cttctggtac tcgggtactg
     2281 tgtactgata ccggttgcaa tcctcaaacg ctagaagttg cgcgggtgca gacccgtcgc
     2341 ggcgcatttt ctgcatttgg gcgagtagct cagctggtta gagcgcctgc cttacacgca
     2401 ggatgtcggg ggttcgaatc cctcctcgcc catcatgatt tggccggacc gctggcgaac
     2461 ctggccccct gtagtggtgt acaaacgttt acaatttgga ggagtctcag ttgaacgcac
     2521 gtttttcttt ggcgctcgcg gccctcgctt tagccggcac tgcaccggtt catgcacagg
     2581 aagccaaagc gcgcattacc gtgatgacct tccagagtca ggaaaagggc acgggcgcga
     2641 aggccgccga tgagcttcgt aaccagctca aggacaagtt cgatcagaag gacgtttatg
     2701 tccttccgac caaggacgtc aacaatacgc tggaacagtc gggcttctca gccagcgagc
     2761 cgctcgcccc gaatgacgaa aaggctctcg cgaatctgtt gcgtgccgac gagtacataa
     2821 cgggctctgt cgacaaggct ccgactggcg cttacacggt gaatgcgcgc ctggttctcg
     2881 cgcgcgacaa cacactctct caggcacttc ctcccgccag caacaacaag atcggcgacg
     2941 cgatggacgc ggtctcaaag tctgtccgcg atgccatgaa gcagctcgat ggcgagaagg
     3001 agtgcatcaa caaggctcgc gctggtgacg tcgccggcgc cctcgcagcc gcgaacaagg
     3061 gcatcgccgc atacccgcag gcgactctgg cgcgcctctg cgccgccaac gtgcagtact
     3121 cgcgctatca gaaggcgacg acgcacgccg attcggttgc gctcgctgat tccgtgcttg
     3181 cagtaacgcg cgtcatcgca cagcaggatc caaagagtgt cgccgcgctc aagttcaaca
     3241 ccgagctgta caaggtgatc ggcgacagcg cacagtcgcg cgccacactg ctcgccctca
     3301 tccgcgccga tccgaccaac gacaagctca tcagtcaggt cgtcaacgag ctcgccggat
     3361 cgggtcacgc caaggaagcc gagccgctcg tcaaggagct actcgatcgc tcgccgggtg
     3421 atccgcaact gctccgtacc gcgttcctcg tatacctcgc cgctcaggac tggcagcagg
     3481 ccgtcacgac cggccccgag ctgatccgtg ctgatacagc cgctgcagac agctcgtact
     3541 tcacacgtat ggctgcggcg tacatgagca tgaaccaggc agccgattcg gcgcaggcca
     3601 ttaccgttct tcaggctggc gttcagaagt atccgaccaa cggcgatctg cttctgtcgc
     3661 ttgcatcagc gttgcgcaag gcgaaccgtg ctcccgaggc ggtcgctgtg ctcaagcgtg
     3721 cgatcgcggc gaatccgaac aatccgcagg cgctgctgtt gctgg
//
LOCUS       DATIMD010000559         4496 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_810861, whole genome shotgun sequence.
ACCESSION   DATIMD010000559 DATIMD010000000
VERSION     DATIMD010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4496
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_810861"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..432
                     /locus_tag="VLI40_12500"
     CDS             <1..432
                     /locus_tag="VLI40_12500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98045.1"
                     /translation="GSEDAIVNEVAEPADAWAATAGGNVQEASADTKETEPAAAEAVV
                     SSPAASEVWVSEERDAFDWHAVANLAVPPAEEQRAAEEWSSTEWDRSSGSMQDHIAAQ
                     LAQVSRRVRSGELEVRGSKQMGPEAALVAALAALLSEQGRK"
     gene            568..1143
                     /locus_tag="VLI40_12505"
     CDS             568..1143
                     /locus_tag="VLI40_12505"
                     /inference="COORDINATES: protein motif:HMM:NF017496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HSU98046.1"
                     /translation="MDMAVVIDTSHTHWTAADLREIPDDRNRYEIIDGELFVTPAPSW
                     AHQRLTRELLRMIGDYLRMHHVGDVLPAPADVALADDTVLEPDLFAVPLIDGRPPQSW
                     ADVRRLLLVIEVLSPGTARSDRTLKRRRYQRERIPEYWIIDGDARIVERWRPDDERPE
                     VITERIEWKPATEIAPLIIDLPKLFAAALGE"
     gene            1331..1404
                     /locus_tag="VLI40_12510"
     tRNA            1331..1404
                     /locus_tag="VLI40_12510"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1365..1367,aa:Arg,seq:cct)
     gene            complement(1517..2068)
                     /locus_tag="VLI40_12515"
     CDS             complement(1517..2068)
                     /locus_tag="VLI40_12515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98047.1"
                     /translation="MRTNLCTRLALVIALMAISSATLHAQAASGATVAPDTARRDLAV
                     INPFGVVFSFFSGEYEHALSPSASVGLAGTYYAPSDFKYFTGEVKLRYYPSEHAPDGF
                     SVALSAGTTHVSGNLFCFDTCDKSATNRPTAGFELDYNWLLGPSRRFVVGTGFGAKRL
                     FGSKTSGSADGLPTARLVLGMAF"
     gene            complement(2237..3325)
                     /locus_tag="VLI40_12520"
     CDS             complement(2237..3325)
                     /locus_tag="VLI40_12520"
                     /inference="COORDINATES: protein motif:HMM:NF012927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HSU98048.1"
                     /translation="MLLLDSYQLGAITLPNRMVMCPLTRNRAPGGTPNALMAEYYAQR
                     ATAGLIITEGTQVAPLGQGYQDTPGIYTDAQRDGWRTVTDAVHLAGGRIFAQLWHVGR
                     VSHSYYHGQQPVAPSAIAPAGKAYTPDGMKDFETPRALTSEDVPGVVAEFRRGAEVAH
                     EAGFDGVELHGANGYLIDQFFQTGTNQRTDKYGGSPTNRMRFLVEILDAVTSVWPSER
                     VGVRVSPAGGSNGIHDADPVETFSHIASTLSDRGLAYVHVVEAPVGTTGPDDRQVCST
                     ALVRESYRGTVITAGGYTPETAERALEKKRADLVAFGRLFIANPDLVERVRRGAPLNE
                     PDRATFYTSGPHGYVDYPAMADAAQVAP"
     gene            complement(3355..4206)
                     /locus_tag="VLI40_12525"
     CDS             complement(3355..4206)
                     /locus_tag="VLI40_12525"
                     /inference="COORDINATES: protein motif:HMM:NF013397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015499 - formate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015724 - formate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HSU98049.1"
                     /translation="MSGAPESTPAPPQGQEPQQASDTTTPATGTRLSAAEIHENVRVT
                     AEEEMRRPASDLAWSALASGLTIGFSFLAAAYLTLWVPAAYAPAATAAGYPLGFIFVV
                     QARNQLFTENTLEPVIPFLQRRDRKTFIRLLRIWTIVLAGNLVGALIFATLAARTPLL
                     DDPMQRALLNVATHGTNGGFGLVVYRAIFGGWLVALMAWLVSSTRATGTQVLYIWITT
                     APIAAFGFRHSIAGAVEAFYLAVTGAASWGEMLGGFLIPAIIGNVIGGVVLVATLNHR
                     QVTSGAQ"
     gene            complement(4206..>4496)
                     /locus_tag="VLI40_12530"
     CDS             complement(4206..>4496)
                     /locus_tag="VLI40_12530"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HSU98050.1"
                     /translation="LDYFGEYPVHEPKPVDVSQDNEGMLRLDLEAEDDTIRNYRERIR
                     QADALGEYALGEVLRGIVEQEQDHQIDLATALGVVPNDQQRKGAAAAKANGK"
BASE COUNT          874 a         1356 c         1410 g          856 t
ORIGIN      
        1 ggctccgagg acgcgatcgt gaacgaggtg gccgagccag ctgacgcatg ggctgcgacg
       61 gctggcggaa acgtgcagga agcgagcgcg gatacgaagg aaacggagcc agctgccgcc
      121 gaggccgttg tttcgtcgcc cgcggcatcg gaggtctggg tctcagaaga gcgcgacgca
      181 ttcgactggc acgcagttgc caatcttgca gtcccgccag ccgaggagca gcgtgccgcc
      241 gaggagtggt cgtccaccga atgggacaga tccagcggct cgatgcagga ccacatcgcg
      301 gcgcagttgg cgcaggtctc gcggcgtgtg cgttccggcg agctcgaggt gcgcggcagc
      361 aagcagatgg gccccgaggc tgcgctggtc gcggcgctcg cggcgttgct gtcggagcag
      421 ggcaggaagt aacggcatgg ccgctcctcg cggcttgcag gggtgatttt gacgtagcgt
      481 agctcggagc gctacgccgc ttttcatagg ctcagcgcat cttgccccga tgcgcacttg
      541 cccactcggc gccgaggagc ctattgtatg gatatggcag tcgttatcga caccagtcat
      601 acgcactgga ctgcagctga tctgcgtgag attccggacg accggaaccg ctacgagatc
      661 atcgacggcg agctgttcgt gacgccggca ccatcgtggg cccatcagcg tctcacgcga
      721 gagctcctgc ggatgatcgg cgactatctg cgaatgcatc acgtcggaga tgttctcccg
      781 gcgcccgctg acgttgcgct ggcagatgac actgtgctcg aacctgacct gttcgctgtt
      841 ccgctcatcg atggacgccc gccacaatca tgggcggatg tccgccgact gctgcttgtg
      901 attgaggtac tctcaccagg cactgctcgg tccgaccgga ctctaaagcg gcggcggtat
      961 cagcgcgaga gaattccgga atactggatc atcgacggcg atgcgcggat cgtggagagg
     1021 tggcgtccgg acgacgagcg gccggaggtg attacagagc ggatcgagtg gaaaccggcc
     1081 actgagatcg cgccgttgat catcgatctg ccaaagttgt tcgcggcagc gctcggggaa
     1141 tgacgggcgg acagctgtcg caatacgccg gttgacggct tcccgtcaaa agcaattagt
     1201 cagtaaggtg attggctgcc gctggcaacg agtggttata ttgaccgccg cacgtcagct
     1261 gggcagtgtt gagagaaggc gcgttaacgt cgcactgcaa cagcttgcaa tgcaacgact
     1321 tacaagtttc gcccccgtag ctcaggtgga tagagcagca gtttcctaaa ctgttggccg
     1381 cgtgttcgag tcacgccggg ggcactcgtt attatggcgc cgaacccgcg atgtaccatg
     1441 ccttccccgt cgcttggcca tggactgcgg gaacggggca gcgagcataa gaacactgca
     1501 caagctgtgc atcgcgctag aacgccattc cgagcaccag ccgcgcggtg ggaagcccat
     1561 ccgcagaacc ggaagtcttg cttccgaaaa ggcgtttcgc gccgaatccc gttccaacga
     1621 cgaaccgccg cgacggtccg agcagccaat tgtagtccag ttcgaaaccg gcggtgggac
     1681 ggttcgtcgc gcttttatcg cacgtgtcga aacagaagag gttaccgctc acgtgcgtcg
     1741 tccccgcgga cagtgcgacg gaaaatccat ctggcgcgtg ctccgacgga tagtaccgca
     1801 acttgacttc accggtgaaa tacttgaaat cgctcggagc gtaatatgtc ccggcaagtc
     1861 caacgctcgc acttggcgac agcgcgtgct cgtattcacc gctgaagaag ctgaacacga
     1921 ctccaaaggg attgatcacg gccagatctc ttcgcgcggt atcaggagcg acagtggcgc
     1981 cggacgctgc ctgggcgtga agggttgccg aagagatggc catgagtgcg atgacgagcg
     2041 cgagacgtgt gcagaggttc gtacgcatgt atctcccgga tgaggaatgc atcacgagcg
     2101 aacgcattcg agctcatgta tcacgctcga acgtcagtcg cccgaatata gcaggcctgt
     2161 gctggagcga tagcagggaa ataaggccgc cgagtgcagc gctcagcgcc tggtcaccgg
     2221 tgctcacgcc tgtcgctcat ggagcgactt gagcggcatc cgccatcgcg ggatagtcga
     2281 catacccgtg cgggccgctc gtgtagaacg tcgcccgatc cggctcattg agcggagcgc
     2341 cgcgacgtac acgctcgacc aggtccggat tcgcgataaa cagccgcccg aacgcgacga
     2401 gatccgcgcg ctttttctcc aacgcgcgct ccgcggtttc cggagtgtag ccgccagcag
     2461 tgatcaccgt gccgcgatac gattcgcgca cgagcgccgt ggagcacacc tgcctgtcgt
     2521 ccgggccggt cgttcctacg ggggcttcga ccacatgcac gtatgcgagt ccgcgatcgc
     2581 tcagtgtgct tgcgatatgc gaaaatgtct cgacaggatc ggcgtcgtga attccgttcg
     2641 accctccggc aggggatacg cgcactccaa cgcgctcgct cggccacaca gacgtcactg
     2701 catcgagtat ctcgaccagg aagcgcatgc ggtttgtcgg actgccgccg tatttgtccg
     2761 tgcgctggtt ggtgccggtc tggaagaatt gatcgatcag atatccgttg gcaccgtgca
     2821 gctcgactcc atcaaagcca gcctcgtgtg cgacctcggc gccgcgccga aactccgcta
     2881 cgacgccggg cacgtcttcg gatgtcagcg cgcgcggcgt ttcgaaatcc ttcatgccat
     2941 ccggtgtgta cgccttgccg gcgggcgcaa tcgcggaggg tgcgaccggc tgctgtccgt
     3001 ggtagtagga gtgcgacacg cgcccgacgt gccagagctg cgcgaatatc cgtccgccag
     3061 cgagatgtac ggcgtccgtc acggttcgcc atccgtctcg ctgtgcatcg gtgtagatgc
     3121 cgggcgtgtc ctgataaccc tgaccgagcg gagctacctg cgtcccttcg gtgatgatca
     3181 ggccagccgt cgcgcgttgc gcatagtact ccgccatcaa cgcattcggt gttccaccag
     3241 gtgcgcgatt gcgagtgagc ggacacatca ccatccggtt gggcagtgtg atggcgccaa
     3301 gttgatacga gtcgagaagg agcattggtg aattcctcgg attgttactg cttgttactg
     3361 cgcgccagac gtcacctggc ggtgattcaa tgttgcaaca agtacgacac caccgatgac
     3421 attcccgatt atcgcgggaa tcagaaaacc gcccagcatc tctccccaac tggccgcacc
     3481 ggtcactgca agatagaatg cctcgacagc acctgcgatc gagtggcgaa atccaaacgc
     3541 cgcgatcgga gccgttgtta tccatatgta aagcacctgc gttcccgttg cgcgagtcga
     3601 agaaaccagc caggccatca acgcaacgag ccaaccacca aatatcgcgc gataaacaac
     3661 cagaccgaag ccaccattcg tgccatgcgt cgcaacgttc aggagcgcgc gctgcatggg
     3721 atcatcgagg agtggcgtcc tggcggcgag tgtcgcgaat atcagtgctc ctacgagatt
     3781 tccggccagt acgatggtcc agattcgcag caagcggatg aacgtctttc ggtcccgccg
     3841 ttgcaggaac ggaataaccg gctctagtgt gttctcggtg aatagctgat tccgagcctg
     3901 cacgacgaag atgaatccaa gcggatatcc ggccgcggtt gcggcaggcg catacgcagc
     3961 cggaacccag agcgtgaggt acgctgctgc gagaaagctg aagccgatcg tgagccccga
     4021 tgcgagcgcg gaccatgcca gatcactggc gggccgccgc atttcctcct cggcggttac
     4081 gcgtacgttc tcgtggatct ccgctgcgga tagtcgggta ccggtggccg gagtcgtcgt
     4141 gtcagaagcc tgctgtggct cctgaccttg tggtggcgca ggtgtcgact ccggtgcgcc
     4201 gctcactatt tcccgttggc tttcgctgcc gcagcgccct tccgctgctg atcgttgggg
     4261 acgacgccaa gcgctgtagc aagatcgatc tgatgatcct gctcctgctc cacgataccg
     4321 cgcaggacct cgccaagcgc gtattcgcca agcgcatcgg cctgccggat tcgctctcga
     4381 tagttgcgaa tggtatcgtc ttcggcctcg agatccagtc gcagcattcc ctcgttgtcc
     4441 tgcgatacgt cgaccggctt gggctcgtgc accggatact cgccgaaata atccag
//
LOCUS       DATIMD010000560         4651 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5720415, whole genome shotgun sequence.
ACCESSION   DATIMD010000560 DATIMD010000000
VERSION     DATIMD010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4651
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5720415"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..487)
                     /gene="ndk"
                     /locus_tag="VLI40_12535"
     CDS             complement(59..487)
                     /gene="ndk"
                     /locus_tag="VLI40_12535"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HSU98051.1"
                     /translation="MAGDYTLTIIKPDAFNSGKAGKITAHLEQQGFRIRAARVMHLSD
                     AEAKEFYAVHSERPFYASLCSFMTSGPCMPMVLEKADAVAALRVAIGATDPAEADAGT
                     VRKLFAESKERNAIHASDSDDNASREARFFFPESEIIRAR"
     gene            complement(488..1360)
                     /gene="sucD"
                     /locus_tag="VLI40_12540"
     CDS             complement(488..1360)
                     /gene="sucD"
                     /locus_tag="VLI40_12540"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HSU98052.1"
                     /translation="MSIFIDNNTKLVVQGITGRDGSFHTKQMMEYGTHVVAGVTPGKG
                     GQKFENTVPVFNTVYDAVRETGANTSVIYVPPMGAADAMMEAADAGIEFVVCITEGVP
                     VLDMTFVYPFMKEKGVRLLGPNCPGLISPGKSKVGIIPGRICTPGPIGLVSRSGTLTY
                     ELVYQMTRAGMGQTTCVGIGGDPINGTNFIDCLAAFERDPDTTAVVMIGEIGGTDEQE
                     AAKFVKEKMTKPVVGFIAGQTAPPGRRMGHAGAIISGSAGTAAEKMQAFEENGLGVAK
                     RPIDVVGLLKERMK"
     gene            complement(1357..2499)
                     /gene="sucC"
                     /locus_tag="VLI40_12545"
     CDS             complement(1357..2499)
                     /gene="sucC"
                     /locus_tag="VLI40_12545"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HSU98053.1"
                     /translation="MNIHEYQAKEIFRAHGVPIPPGDVATTADEAAEIARRFGTTVVV
                     KAQVHAGGRGKAGGVKLAKTPEEAKEVASRILGMQIKGITVEKVLVTPAADIATEAYA
                     GIILDRVSKKPVFMVSPAGGIDIEEVAATTPEKIMRLPIDSRYGLRGYQAMELGFFLY
                     KDVKQVRAAAKIMQDLYHAFMDSGASLAEINPLVTTPDGEVLALDAKMVIDDNELDRR
                     PSIAALRDESSEAPSEVAARKANLTFIKLDGNVGCVVNGAGLAMATMDLVKYYGGDPA
                     NFLDIGGSSNPEKVVSALKIITSDPNVKAILFNIFGGITRTDDVANGIVTATRANPLK
                     VPIVIRLTGTNEEIAVKILTENGFSAMTDMDEAVKKAVALATGKAA"
     gene            complement(2522..3472)
                     /locus_tag="VLI40_12550"
     CDS             complement(2522..3472)
                     /locus_tag="VLI40_12550"
                     /inference="COORDINATES: protein motif:HMM:NF009007.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HSU98054.1"
                     /translation="MQKSGKTAVIALGGNALSPAGERSTIFDQFRHTRESLGPIVALA
                     QDGWNVCIVHGNGPQVGDELVRNEEARTTVEPLPLGVLVAATAGWIGYMIQQSLENAL
                     RAAGSDRRVVTVLTQVVVDEHDPALEHPSKFVGHELPEGRARELAEQGIATARDGNGR
                     LRRVVGSPTPVEIHEEPVIQSLLSQGVVVVACGGGGIPVFRDASGALEGVDCVVDKDL
                     AAAVLAMGVGADLFMILTDVDAVYADWGKPAQRALPRLTIQEVADLDRQKAFGEGSMA
                     PKVRAAAKYVRQTGGRAIITELSRGSNAVAGKAGTEIVPA"
     gene            complement(3472..>4651)
                     /locus_tag="VLI40_12555"
     CDS             complement(3472..>4651)
                     /locus_tag="VLI40_12555"
                     /inference="COORDINATES: protein motif:HMM:NF015644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UPF0182 family protein"
                     /protein_id="HSU98055.1"
                     /translation="SLSWDSRGVHVTPYARRHITVLGALLLLFAAWGFRLDAFRELIQ
                     GSGPDGLLTRTDHVWLIPTDLALSLITLGGAVVLLVAGWMGQTVTAFASVTIVIIGTI
                     AAQLVGPWVSGRIAASPANAAAERPYSETRADFDARAFPHEPTPPSMTYLADSVLLAN
                     AGQVQIRGALADVVFPNARGAVVVRDVPRIITAPRLGAGFARLMHAWSEQNPRLMTGT
                     IPPSAAFVRERDVRSRVSALAPVFSLSRSIGAIPTSRGVLWVIDLYTTSETYPLSAPH
                     YIYGTRLTYRHHAATAYVSGGTAATIIVPDSALDPVARAWFGAHPGKYIMPGIPRDMI
                     TPPPVAPVVPSGSSPEDQLFRENVGRIYERMRATLDSGDLRAFGSAFDSLGVIIRGRR
                     "
BASE COUNT          831 a         1468 c         1405 g          947 t
ORIGIN      
        1 ttccaaacgg tttacgtgcc agatcgacaa cattgctccg attcacgcca tacatacgtc
       61 agcgagcgcg aattatctcg ctttccggga aaaagaaccg cgcttcgcgc gacgcgttgt
      121 catcggagtc cgatgcatgg atcgcattcc gctccttgga ctcagcgaac agcttgcgaa
      181 cggttcccgc atcggcttcc gctggatccg tggctccaat cgctacacgt agcgctgcga
      241 ccgcatctgc cttctccaga accatcggca tgcacggacc cgatgtcatg aagctgcaga
      301 gcgacgcgta gaacgggcgc tcgctatgaa ctgcgtagaa ctcctttgct tcggcatcac
      361 tgagatgcat gactcgcgct gcgcgaatcc tgaagccctg ctgctcgagg tgggcggtga
      421 tctttcccgc ctttcccgaa ttgaatgcgt cgggcttgat gatcgtgagt gtgtagtcgc
      481 cagccattta cttcatgcgc tcctttagaa gtccaacaac gtcgatcggt cgcttggcga
      541 cgccaagtcc gttctcctcg aatgcctgca ttttctctgc tgcggttccg gccgagccgg
      601 agatgatcgc gcctgcgtga cccatgcgac gacccggtgg tgcggtctgg ccggcgatga
      661 atcctactac gggcttggtc atcttctcct tcacgaactt cgctgcttcc tgctcatcgg
      721 tgccaccaat ctcgccgatc atgacgacgg ctgtggtgtc gggatcgcgc tcgaatgccg
      781 cgagacagtc gatgaagttg gttccgttga tcggatcgcc gccgatacct acgcaggtgg
      841 tctggcccat tccggcgcgc gtcatctgat agacgagctc gtacgtgagc gttccagagc
      901 gactgaccag accaatcggg cccggcgtac agatgcggcc tggtatgatt ccgaccttcg
      961 atttcccggg cgagatgagt cccgggcagt tggggccgag cagccgaact cccttctcct
     1021 tcatgaaggg atagacgaag gtcatgtcga gcacgggcac gccttcggtg atgcagacga
     1081 cgaattcaat tccagcgtct gctgcttcca tcatcgcatc agccgcgccc atcggcggga
     1141 cgtagatgac gctcgtgttg gcgcccgtct cgcgtaccgc gtcgtacacg gtattgaaca
     1201 cgggcacggt gttctcgaac ttctggccgc ccttgcccgg agtcacaccg gcgacgacgt
     1261 gcgtgccgta ctccatcatc tgcttcgtat gaaacgatcc gtcgcgcccc gtgattccct
     1321 gcacgacgag cttggtgttg ttatcgatga agatgctcat gctgccttcc ccgtcgcgag
     1381 cgcgactgct ttcttcaccg cttcgtccat atcggtcatc gcgctgaatc cgttttccgt
     1441 aagaatcttc accgcgatct cttcattggt gccggtgaga cgaatgacta tcggcacctt
     1501 gagcgggttt gcccgggttg ccgtgacgat cccgttcgcg acgtcgtcgg tgcgcgtgat
     1561 gccgccgaag atgttgaaca ggattgcttt cacatttgga tcgctcgtga tgatcttgag
     1621 ggcgctgacg actttctcgg gattgctgga gccgccgatg tcgagaaagt ttgccgggtc
     1681 accgccgtaa tacttgacga gatccatcgt tgccatggcg agaccagcac cgttcacaac
     1741 gcagccgacg tttccgtcca gcttgatgaa ggtgagattc gccttgcgcg cggcaacttc
     1801 actcggtgct tccgacgatt cgtcgcgcaa cgcagcgatg ctgggacgac gatcgagctc
     1861 gttgtcgtcg atcaccatct tggcgtccag cgcaagcacc tcgccgtccg gcgttgtgac
     1921 gagcggattg atctcggcga gcgacgcgcc gctatccatg aaggcgtgat acagatcctg
     1981 catgatcttc gcggcggcgc gaacctgctt cacatccttg tacaggaaga agccaagctc
     2041 catggcctgg tatccgcgca gaccgtagcg cgaatcaatc ggcaggcgca tgatcttttc
     2101 aggtgtcgtc gcggcgactt cctcgatgtc gatgccacca gcagggctca ccatgaagac
     2161 tggtttcttt gaaacgcgat cgaggatgat ccccgcgtac gcttcggtcg caatgtcggc
     2221 ggcgggcgtg acgagaacct tctcgacggt gattcccttg atctgcatgc caaggatgcg
     2281 cgacgctact tccttcgctt cctcaggcgt cttggccagc ttcacgccgc ccgccttgcc
     2341 gcgtccgcct gcgtgcacct gcgccttgac gactactgtt gttccaaagc ggcgtgcgat
     2401 ctccgcggct tcgtcggccg tggtggccac atcgcccggc gggatcggga ccccgtgcgc
     2461 gcgaaagatc tctttcgcct gatattcgtg gatattcaag ttggctccgg taattaatgc
     2521 actatgcggg aacgatctcc gtccccgcct ttcccgcgac ggcattgctg ccccgcgaaa
     2581 gctctgtaat aatggcacgg ccgccggtct ggcgcacgta ctttgcggcc gcgcggacct
     2641 ttggcgccat gctgccctct ccgaaggctt tttgccgatc gagatcggca acttcctgaa
     2701 tggtaaggcg tggcagcgct cgctgcgcgg gtttgcccca atcggcgtaa acagcgtcca
     2761 cgtcggtgag gatcatgaac agatcggcgc caacgcccat ggcgagcacg gccgcggcga
     2821 gatccttgtc gaccacgcaa tcgacgcctt cgagcgcgcc ggacgcgtcg cgaaagacgg
     2881 gaatgccgcc accgccgcac gcgacgacaa ccacgccctg gctgagaagc gactggatta
     2941 ccggctcttc gtgaatctcg acgggcgtgg gactgccgac gacgcgccgc aatcgtccat
     3001 tgccatctct cgccgttgcg atgccctgct ccgcgagctc gcgtgcacga ccctccggaa
     3061 gctcgtgacc cacaaatttg gatggatgtt ccagcgctgg atcatgctcg tcgaccacca
     3121 cctgcgtaag cacggtaacg acgcgccggt cgcttccagc tgcgcgcagc gcattctcga
     3181 gcgattgctg gatcatgtag ccgatccatc cggccgtcgc ggcgacgaga acgccgagtg
     3241 ggagcggctc tacggtcgtg cgcgcttcct cgttgcgaac gagctcgtcg ccgacctgcg
     3301 gaccgttgcc atgtacgatg cacacgttcc agccgtcctg cgcgagcgcg acgatcgggc
     3361 caagactctc gcgtgtgtgc cggaactgat cgaagatggt agatcgctcg ccggcgggcg
     3421 acagtgcatt gccgccgagc gctatgactg ctgtcttacc ggacttctgc atcagcgccg
     3481 accccgaata atgacgccga gcgaatcgaa cgcggaaccg aacgcccgca gatctccgga
     3541 gtcgagtgtc gcacgcatgc gctcgtagat gcggccgacg ttttcgcgga acagctggtc
     3601 ttccggcgat gatccgctcg gtactacggg tgcgaccggc ggcggcgtga tcatgtcgcg
     3661 cgggataccg ggcatgatgt acttgccggg gtgagcaccg aaccacgcgc gcgctacggg
     3721 atcgagcgca gagtccggga cgattatcgt ggcagcggtt cctccgctga catacgcggt
     3781 tgcggcatgg tgccggtacg taagacgagt gccgtagatg taatgcggcg cgctgagcgg
     3841 atacgtctcg ctggtcgtgt acaggtctat cacccacaac accccgcgtg acgttggaat
     3901 cgcgccgatg ctgcgcgaca ggctgaagac cggcgcgagc gcggaaaccc ggctcctgac
     3961 gtcacgctcg cgaacgaacg ctgcactggg cggaatcgtg cctgtcatga gacgcggatt
     4021 ctgctccgac cacgcgtgca tcagacgtgc gaatccggct ccgagcctcg gcgcggtgat
     4081 gatccgcgga acgtcccgga cgacgacggc gccacgcgcg ttgggaaaca cgacatctgc
     4141 cagcgcgcca cgtatctgta cctgtcccgc gttcgcgagc agcaccgagt ccgcgaggta
     4201 cgtcatcgat ggaggggtcg gctcatgtgg aaatgcgcgc gcatcgaagt cagcgcgcgt
     4261 ttcactgtat ggccgctccg cggctgcgtt tgctggcgat gctgcgattc gccccgacac
     4321 ccatggcccg acgagctgcg cggcgatcgt accgattatg acgatggtga cgctggcaaa
     4381 cgccgtgacg gtctgcccca tccatcctgc aaccagcagt acgacagcgc caccgagcgt
     4441 gatcagcgac agcgcaagat cggtggggat cagccagacg tgatccgttc gtgtgagaag
     4501 cccgtccgga ccgcttccct gaatcagctc gcgaaatgcg tcgagtcgaa agccccacgc
     4561 cgcgaatagc agaagtagtg cgccgagcac agtgatgtga cggcgtgcat atggcgtgac
     4621 gtgcacgccg cgtgagtccc agctcaggct c
//
LOCUS       DATIMD010000561         3872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1099927, whole genome shotgun sequence.
ACCESSION   DATIMD010000561 DATIMD010000000
VERSION     DATIMD010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3872
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1099927"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..383)
                     /locus_tag="VLI40_12560"
     CDS             complement(<1..383)
                     /locus_tag="VLI40_12560"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: protein motif:HMM:NF015299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HSU98056.1"
                     /translation="MTRRTISAPARVAGVGLHLGRECELTFRPAGAGEGITFRRVDLA
                     DKPVIPAHVDQVTATERRTQLGSGEAAIHTVEHVLSAVAALEIDDLMIDMSGPEPPIL
                     DGSAAPFYDALIGTGIEELPGQPEYL"
     gene            complement(380..1348)
                     /gene="lpxD"
                     /locus_tag="VLI40_12565"
     CDS             complement(380..1348)
                     /gene="lpxD"
                     /locus_tag="VLI40_12565"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: protein motif:HMM:NF002060.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HSU98057.1"
                     /translation="MALTAREIAQLVGGELRGDPESAVDGVAALDRAGPRHATFLASA
                     RYTEQLVNCRAGVVLVARDLADATCAAPSRIIVDRPHEALQAILPALYDVAPAESWIA
                     PTARIGHGVKLGAGVRIDDYVVLGDGVKIGDGTRLYPHVTVYSGGEIGSRCAIHSGAR
                     IASDGFGYVFRNGRHEKIPHVGRCIIGDDVEIGANTTIDRGSIDDTVIGAGTRIDNLV
                     QIGHNVRIGSLCLLMAQVGIAGSAHIGNGVIIAGQAGIGGHVTIGDGARIAGQAGVFG
                     DVPAGESWSGYPARPHRESLRATAALFKLTGMIRKLERLVNGNAPE"
     gene            complement(1356..1994)
                     /locus_tag="VLI40_12570"
     CDS             complement(1356..1994)
                     /locus_tag="VLI40_12570"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HSU98058.1"
                     /translation="MMSKWMHAAMLTAATLALAPSAFAQTAPVKLAYINSQKILADAP
                     GRAEAEATYNKEMATARAQLQQMDDSLKGMVASYDKDAPGLDSARKEARGKTIRDTEA
                     AFTQRAQDLNNQMQQRQADLARPLMDQVSQVLDQVRAQGGYTMIFDVGAQGSALVSAD
                     KSLDLTDTVLAKLKALGPPKAGATPAETPAKPATTKPVGPAQKPAGVTRPKP"
     gene            complement(2001..>3872)
                     /locus_tag="VLI40_12575"
     CDS             complement(2001..>3872)
                     /locus_tag="VLI40_12575"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HSU98059.1"
                     /translation="ISGIGVTGNRSVPASAIVGSMQTKPEGFWWFRNGEFDDATFAGD
                     LTDRIPSLYASRGYIDFRLLQDTMRVDRQNGKGEIQLNVKDGPRYTVGNFEILGNKRF
                     TQEQLRNYFPFDREDRSLAESALGLFHHTYKNPKGTFDESRWTDATEKVKEAYSNEGY
                     IYAVVTPVEERVPSQDSVRKVNLRWDIDEKSPAIVNRIDIAGNDYTYESCIREQIVMA
                     PGQVFKRDYLIRSYQNIANLNFFDSPMPEPEVTPDENGDVDITFKVKEKRTGNVNFGA
                     SMGQGTGLGGFIGLDQPNLFGRCKRAQLNWQFGKYINDFSLTYSDPNIRDSRISGSVT
                     AYDTKTRYTIADLGQSTRIGGQIQFGFPVPNSYFSRIFLSYGGESVKYANDQGTLLST
                     IITSCKSCFRSSLGVSYQHDTRLGLPFATQGGLQNFSASFNGGPLGGTANFQKYTTEL
                     RSYAPLAYIGGNPLGGEPMTIVAGLTARAGTVLGDPGPFFSSQSFALGGTQYGEPLRG
                     YCEFSITPAGYDPSACNGNAKTTSFGNAFFVTTAELGLRINQSVYLNTFMEGGNVWAR
                     PRDFDPTRLFRSVGVGGSVVSPLGPLGVDFAYGLDRVDAQGHSNPGWKVHFKLGQYF"
BASE COUNT          672 a         1270 c         1146 g          784 t
ORIGIN      
        1 aggtattccg gctgtcccgg aagctcttcg atccccgtgc cgatcagggc gtcgtagaaa
       61 ggggccgcgc tgccgtcgag aataggtggc tccggcccgc tcatgtcgat catcagatcg
      121 tcgatctcga gcgccgcaac cgctgaaaga acgtgctcga ccgtgtggat cgccgcctcg
      181 cccgacccca gctgcgttct gcgctccgtg gccgtaacct gatccacgtg cgccggaatc
      241 acgggcttgt ccgccaggtc cacacgtcgg aacgtgattc cctcgcccgc gcctgcaggg
      301 cggaatgtca gctcgcattc tcgccccaga tgcaaaccaa cgccggcaac cctcgcgggt
      361 gcggatattg tgcgccttgt cattccggcg cgttgccgtt cacaagtctt tccaatttcc
      421 tgatcatgcc ggtgagtttg aaaagcgccg ccgttgcgcg cagtgattcg cgatgcggcc
      481 gcgctgggta tccggaccac gactcgcccg ctggaacgtc gccgaagacg cccgcctgtc
      541 cagcgatgcg cgcgccgtct ccgatcgtca cgtgaccgcc aattccggct tggcccgcaa
      601 tgatgactcc gttcccgatg tgcgccgagc ccgcaatgcc gacctgagcc atcaatagac
      661 acaacgatcc gatgcgcacg ttgtgtccga tctgcacgag gttgtcgatg cgtgttccgg
      721 cgccgatcac cgtgtcgtcg atgctgccgc gatcgatcgt tgtattcgcg ccgatttcca
      781 catcgtcacc gattatgcag cgtccgacat gtggaatctt ttcgtgccgc ccgtttctga
      841 acacgtagcc gaagccgtcg ctcgcgatgc gcgcgccgga atggatcgca catcgcgagc
      901 cgatctcccc gccgctgtac acggtcacgt gcggatacag tcgcgttcca tcaccgatct
      961 tgacgccatc gcccagcacg acgtaatcat cgatacgtac acccgcgcca agcttgacgc
     1021 cgtgtccgat ccgcgcggtt ggtgcgatcc acgattccgc cggtgcaacg tcgtacagtg
     1081 cgggtagtat cgcctgcagc gcctcgtgcg gcctgtcgac gattattctg ctcggcgccg
     1141 cgcacgtcgc atccgccaga tcgcgcgcga ccagcaccac acccgcgcgg cagttgacga
     1201 gttgctcggt gtagcgcgcc gaggccagaa aagtagcgtg gcgtggcccc gccctgtcga
     1261 gcgcagccac gccatctacc gcagactccg ggtcaccgcg cagctcgcca ccgacgagct
     1321 gcgcgatttc ccgtgcagtc agcgccatcg ccttatcacg gctttggacg cgtcacgccc
     1381 gccggcttct gtgctggacc gaccggcttc gtggtcgccg gcttggcggg tgtctccgcc
     1441 ggagttgctc cagccttcgg cgggccgagt gccttgagct tggccaggac cgtgtccgtg
     1501 aggtcgagcg acttgtccgc cgacaccagc gcgctaccct gcgcgccgac gtcaaagatc
     1561 atcgtatagc cgccctgcgc acgcacctga tcgagcacct gcgaaacctg atccatcaac
     1621 ggccgtgcaa gatctgcctg gcgctgctgc atctggttgt tgagatcctg cgcacgctga
     1681 gtgaaagcag cttcagtgtc acggatcgtc ttgccgcgcg cttccttgcg cgcgctgtcg
     1741 aggccgggcg cgtccttgtc atagctcgcc accattccct tgagcgagtc gtccatctgc
     1801 tgcaactgcg cccgcgcggt cgccatctcc ttgttgtacg tcgcctccgc ttctgcccga
     1861 cccggcgcat ccgcgaggat cttctgggag ttgatatacg ccagctttac cggcgccgtc
     1921 tgcgcgaatg ccgaaggagc gagtgcgagt gtcgctgccg taagcatcgc ggcgtgcatc
     1981 catttgctca tcatgttttc ctagaagtac tgtccaagtt tgaagtggac tttccacccc
     2041 gggttagagt gcccctgcgc gtccaccctg tccaggccgt acgcgaagtc gacaccaaga
     2101 gggccgagcg ggctcaccac tgagccgccc acgcctacac tgcggaagag gcgcgtggga
     2161 tcgaagtccc gcggccgcgc ccatacgttc ccgccttcca tgaacgtatt tagatacacc
     2221 gattgattga tccggagccc cagctccgcg gtcgtgacaa agaacgcgtt cccgaacgag
     2281 gtggtcttgg cgttgccgtt gcacgccgac ggatcgtatc cggccggcgt gatggagaac
     2341 tcgcagtagc cgcgcagcgg ctcaccgtac tgcgtgccgc cgagtgcaaa cgactgggac
     2401 gagaagaacg gtccgggatc ccccagcacc gtacctgccc gcgctgtgag accggccacg
     2461 atcgtcatcg gctcgccacc cagcggattc ccgccgatgt acgccagcgg cgcgtaggag
     2521 cggagctcgg tcgtgtattt ctggaagttg gcggttccac cgagtgggcc gccgttgaac
     2581 gacgcgctga agttctgcaa gccaccctgc gtcgcgaatg gaagcccgag gcgcgtgtca
     2641 tgctggtacg aaactccgag cgacgatcgg aagcagctct tgcagctcgt tatgatcgtg
     2701 ctgagcaacg tcccctgatc gttcgcgtac ttcaccgact cgccgccgta cgacaggaag
     2761 atgcggctga agtaggaatt gggaaccggg aagccgaact ggatctgacc gccgatgcgc
     2821 gtgctctgac cgaggtcggc gatggtgtag cgcgtttttg tatcgtacgc cgtcaccgat
     2881 cccgagatgc gcgaatcgcg aatgttggga tcggagtacg tgaggctgaa gtcgttgatg
     2941 tacttgccga actgccagtt gagctgcgca cgcttgcaac gcccgaacag atttggctga
     3001 tccagtccga tgaatccacc caggcccgtt ccctgaccca tcgacgcacc gaagttcacg
     3061 ttgccggtac gtttttcctt caccttgaac gtgatgtcga cgtcgccgtt ctcgtccggc
     3121 gtgacttcag gctccggcat cggagaatcg aagaaattca ggttcgcgat gttctgatag
     3181 ctgcgaatga gatagtcgcg cttgaaaacc tgacccggcg ccatgacgat ctgctcgcgt
     3241 atgcacgact cgtacgtgta gtcgtttccg gcaatgtcga tgcgattcac tatcgctgga
     3301 gacttttcgt cgatgtccca gcgcaggttg accttgcgaa cagaatcctg tgacggaacg
     3361 cgctcctcca ccggagtgac cacagcgtag atgtaaccct cgttgctgta cgcttccttc
     3421 accttctccg tcgcatcggt ccagcgcgat tcgtcgaagg tccccttggg attcttgtag
     3481 gtgtggtgga acagaccgag cgcgctctcc gccagcgagc ggtcctcacg atcgaacggg
     3541 aagtagttgc gaagctgctc ctgcgtgaag cgcttgttcc cgagaatctc gaaattgccg
     3601 acggtatagc gtggaccatc cttcacgttc agctggatct ctcccttccc gttctgcctg
     3661 tccacacgca tcgtgtcctg cagcagcctg aagtcgatgt agccgcggct cgcatacagc
     3721 gacggaatgc gatcggtgag gtcgccggcg aacgtggcgt cgtcgaactc gccgttccga
     3781 aaccaccaga agccttccgg cttggtctgc atcgagccga caatcgcgct cgctggaacc
     3841 gagcggttgc cggtaacgcc gatcccggaa at
//
LOCUS       DATIMD010000562         4512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1100061, whole genome shotgun sequence.
ACCESSION   DATIMD010000562 DATIMD010000000
VERSION     DATIMD010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4512
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1100061"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..495
                     /locus_tag="VLI40_12580"
     CDS             <1..495
                     /locus_tag="VLI40_12580"
                     /inference="COORDINATES: protein motif:HMM:NF014908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98060.1"
                     /translation="TPVADDETYGELQGRLSELGALALIEALTLIELGHTTEKPQDDS
                     LATYAAKVDRETTRIDWTLSEHEVANVIRAYDPRPGAWTTHRGADLKLFGSRRIFDVS
                     GSPGEVLEADADGLVVACGAGGVRICDVQPAGKRRMQAIEWHRGRGIAIGDTLGDTLG
                     DTLG"
     gene            1203..2558
                     /gene="rsmB"
                     /locus_tag="VLI40_12585"
     CDS             1203..2558
                     /gene="rsmB"
                     /locus_tag="VLI40_12585"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: protein motif:HMM:TIGR00563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HSU98061.1"
                     /translation="MNSEIRDTSSGSVTRSSSITPTRIIAAEVCADVRAGQLLDPSFE
                     RHTTQIDSRDRRWTQELLYGMMRKRAFLDAVLSDRVRGGLVRLDPDLIDLLRLGSYQL
                     LCMGSVPAYAAIAQTVELTKTRHGIGASKLANAVLRRTDRERANLGVATPPDPIDALS
                     LASSHPRWLVARWVARWGADDTAALLAANNTEAPVVLRPFNTTRTELAEMLAEAGVPS
                     HGAPLVADSIELGHGVSLIELEAFTRGLFFVQDPAATLVVQYAGIAPGSRVADLCAAP
                     GGKTFEMARDAEVVFAADRSGARMQRVIATALRLKSENVVSLVDDARHPALRNMDAVL
                     VDVPCTGTGTFRRHPDARWRLKASDLAVMPAIQRSILRAAAEVVKPGGLLIYSTCSLE
                     PEENDVQIETFLEDHPEFALEPPPDGVVPASTLDAGRLRVLPHRHGTDGAFAARLRRS
                     E"
     gene            2559..3098
                     /locus_tag="VLI40_12590"
     CDS             2559..3098
                     /locus_tag="VLI40_12590"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HSU98062.1"
                     /translation="MNFRALLRRAFPYIVIGIGGFALAYVVILIFVLPTKIVPSAPQP
                     PAAPASSPVLQPIDTGVAQPPPMPAEPPPVTARIIQPPRDTTPVITPDLVGMALPDAR
                     GVLNNLRLRTVVTRDTSSFQPPNTVIRQNPAANLSIRPGESVTLTVSYFPPDSTPNTI
                     RVPRTTAPPNIRPAADALR"
     gene            3126..3800
                     /gene="rpe"
                     /locus_tag="VLI40_12595"
     CDS             3126..3800
                     /gene="rpe"
                     /locus_tag="VLI40_12595"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HSU98063.1"
                     /translation="MTVKPIRIAPSILSADFACLRDEIDMCKQGGADWIHIDVMDGQF
                     VPNLTFGTKVIDAVRRCTDLPLDVHMMVIHPESYFEDFVRAGATGLTIHAESTVHLQR
                     HLSHIRSLGCRAGVAINPATSLDAVREVTDDIDLLLVMTVNPGFGGQAFIPASVDKLR
                     RARRLLDDARSDADLEIDGGVARDTILQCRRAGVDAFVAGHAIFSASKPSAEIGELRA
                     AAMELA"
     gene            3797..4339
                     /locus_tag="VLI40_12600"
     CDS             3797..4339
                     /locus_tag="VLI40_12600"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HSU98064.1"
                     /translation="MTGRGQLGVVAIVLVAVAAIGFAVTRALGTELTPLGAGTRAPDF
                     HAVTLDTPPKARTLADYKGQVVLVNIWATWCQPCRVEMPSIERLYKTYGPKGLRVVAV
                     SIDDPGTEPAIRAFVRDMGMTFDVLHDPAGKIEHAYQVTGYPETVIIGKDGVIRKKVA
                     MAIDWDTEGNRRLIEHLLSE"
BASE COUNT          836 a         1469 c         1386 g          821 t
ORIGIN      
        1 accccggtcg ccgacgacga gacctacggc gagctccagg gccggctttc ggagctcggg
       61 gcgctggcgc tgatcgaagc gctgacgctg atcgagctcg gccacacgac tgaaaagcca
      121 caggatgatt ctctggcgac atatgcagca aaggtcgatc gggaaaccac ccgcatcgac
      181 tggacgctca gcgagcacga agtcgccaac gtgatacgcg cctacgatcc caggccgggg
      241 gcatggacta cgcatcgagg cgcggacctc aagctgttcg ggtcacggcg cattttcgac
      301 gtctccgggt cacccggtga agtgctggag gcagacgcgg acggtcttgt cgtcgcgtgc
      361 ggcgcgggcg gggtccggat atgcgacgta cagccggccg gtaagcgccg catgcaggca
      421 atcgaatggc atcgcggccg cggcatcgcg ataggcgaca cgctcggcga cacgctcggc
      481 gacacgctcg gctgaccgcc aacgcgccgc acgcgagcgg cgcctcatgt aatcgatttc
      541 acccggtgcc gaaaatgtgt cgcgctaact caacgggtgt tggacgcaaa cgtcaatgga
      601 tagctttcgc tgccagggcg aaatcggcca aacatgcggg agatcgaccc agacttccct
      661 ccctgacgtc acctgaacac acgttcaggc gcctgtccac acctgctcat cgcctgtgaa
      721 tcggatggga attgaccgct acgcccggga aagccgcgcg attaccattt cgatgcggac
      781 ccatgcttca aggtatgatg attacgtaca tttctgtcgc acgaacgaat gttctctgta
      841 tattcgcctc ggcacgacac tcgcttaaac tctcacaaat ttgagaaacg gtccgcagat
      901 ggcagttatc gttgataatc gggctgatct gcgtaatcgt gagtcaacaa cttttgtaac
      961 ctcggatcaa gtgacacgcc ttgtatcgtg cacttcgcga ggggcatttg gcatctacgg
     1021 cgtccgcacc ttcggagagg ccgttcttgg cagcgccctg cgcgacgttc ctttcgccat
     1081 tggaaaccat gagcacgaat cccggaatca tcggggacgg gcagttaccg gggtattccc
     1141 gggcccatcc gccgatgcga agccgcagtc cagtcgccgc caaccgccgg gatgttgaaa
     1201 gcgtgaactc cgagatcagg gacacctcgt ccggcagcgt cacgcgcagc tcgtcgatca
     1261 cgccgacgcg catcattgcc gcggaagtat gtgcggacgt ccgggcgggc cagttgctgg
     1321 acccatcgtt cgagcggcac actacccaga tcgactcccg cgaccgacgc tggacgcagg
     1381 agctgctcta cgggatgatg cgcaagcgcg ccttcctcga cgcggtgctt tccgaccgcg
     1441 tccgtggcgg cctcgtacgc ctcgacccgg atctcatcga tctgctccgg ctcggctcat
     1501 atcagctgct gtgcatggga tcggtccctg cgtatgccgc gatcgcgcag accgtggagc
     1561 tcaccaagac gcgccatggc atcggcgcaa gcaagctcgc aaacgcagtt ctgcgcagaa
     1621 cggaccggga gcgcgccaat ctgggcgtgg cgacgccgcc ggaccccatc gacgcacttt
     1681 cactcgccag ctcgcaccct cgctggctcg tcgcacgctg ggtggcccga tggggcgctg
     1741 acgataccgc cgcactcctg gcggcaaaca acactgaagc gccagtggtc ctccggccgt
     1801 tcaacacgac gcggaccgag ttggccgaga tgctggcgga ggcgggagtt ccttcgcatg
     1861 gagcgcccct cgtcgccgac tccatcgagc tgggacacgg cgtctcgctt atcgagctcg
     1921 aggcgttcac gcgcggcctg ttcttcgtgc aggatccggc ggcgactctg gtggtccagt
     1981 atgccggcat cgcgcccggc tcccgcgtcg cggatctgtg cgccgcgcct ggtggaaaga
     2041 cgttcgagat ggcgcgcgat gcggaggtcg tctttgcggc cgatcgctcc ggcgcgcgca
     2101 tgcagcgcgt catagcaacg gccctccggc tgaagtcgga gaacgtcgtg tcactggtgg
     2161 acgacgctcg gcatccggcc ctgcgcaaca tggacgcagt tctggtcgac gtgccgtgta
     2221 ccggcacggg caccttccgg cggcatcccg acgctcgctg gcgactcaag gcctcggatc
     2281 tcgcggtgat gccggctatc cagcggtcaa ttctcagggc cgccgccgaa gtcgttaagc
     2341 ctggcggact gctgatctac agcacgtgct cgctcgagcc cgaggaaaac gacgtccaga
     2401 tagagacctt cctggaagat caccccgagt tcgcgctgga gccgccgcct gatggcgtgg
     2461 tacctgcttc caccctcgat gcggggcgcc ttcgcgtcct accgcacagg catggaaccg
     2521 acggcgcctt cgccgctaga cttcggagat ctgaataggt gaattttcgc gcgctcctgc
     2581 ggcgtgcgtt tccttacata gtgatcggca tcggcggctt cgcgcttgct tacgtcgtga
     2641 tcttgatctt cgtcctcccg acgaagatcg ttccatccgc gccgcagcct ccagccgctc
     2701 ccgcgtcgtc gccggtgctt cagccgatcg acacgggagt cgctcaacca ccgccgatgc
     2761 cggccgaacc tcccccggtt accgcgcgaa tcattcagcc gccccgggat acgacgcccg
     2821 tcatcacgcc ggatctcgtg gggatggcac tccccgacgc acgcggagtc ctgaacaacc
     2881 tgcgtctcag aacggtcgtt acccgcgaca ccagctcgtt tcagccgcca aataccgtga
     2941 tccgacagaa tccagccgcc aatctgtcca tcaggcccgg tgaatccgtc acccttacgg
     3001 tctcgtactt tcctccggac agcacgccca atacaatccg ggtaccgcgc acgaccgcgc
     3061 cgccgaacat ccggccggca gcggacgcgc tccgctagca ggacacgacc catccaaagc
     3121 aggccatgac agtgaaacca attcgcattg ccccctcgat cctgagcgcg gacttcgcat
     3181 gccttcgcga cgagatcgac atgtgcaagc aaggtggcgc tgactggatc cacatcgatg
     3241 ttatggacgg gcagttcgtc ccgaatctga cgttcggaac caaggtgatc gatgccgtgc
     3301 ggcgctgtac ggaccttccg ctcgacgttc acatgatggt gatccatccg gagtcgtact
     3361 tcgaggattt cgtgcgcgcc ggtgcaacgg gcctgacgat tcacgccgag tcgacggtgc
     3421 atctccaacg gcacctttcg catattcgat cgctgggctg ccgagcgggg gtcgcgataa
     3481 atccggccac ctcgctcgac gccgtgcggg aagtgacgga cgatatcgat ctgctgctcg
     3541 tgatgaccgt caatcccggg ttcggcggcc aggcgttcat tccggcgtcg gtcgacaagc
     3601 tccgccgcgc gcggcgcctg ctcgacgacg ctcgttccga tgctgacctg gaaatcgacg
     3661 gtggtgtcgc gcgcgatacg attctgcaat gccggcgcgc cggcgtggat gcgtttgtcg
     3721 cgggtcacgc gattttctcc gcatccaagc catccgctga aattggcgag ctgcgagctg
     3781 ccgcaatgga gctggcatga ccggacgcgg acagcttggc gtggttgcaa tagtactcgt
     3841 cgccgtagcg gcaatcggct tcgcggttac acgcgcactc ggaactgagc tcacgccact
     3901 cggtgccgga acgcgagccc cggattttca cgctgtgacg ctcgacacgc cgcccaaagc
     3961 caggacgctt gccgattaca agggtcaggt cgtcctggtc aacatctggg cgacgtggtg
     4021 ccagccctgc agggtggaga tgccaagcat cgagcgcctg tacaagacat acggaccaaa
     4081 gggactgcgc gtcgtcgcgg tgagcatcga cgatcccggt acggagcccg caattcgcgc
     4141 gttcgttcgt gacatgggaa tgacattcga cgtgctgcac gatccggcgg gcaagatcga
     4201 gcacgcatat caggtgaccg gttaccccga aaccgtcatc atcggaaagg acggcgtgat
     4261 tcgaaagaaa gtcgcgatgg ccatcgattg ggacactgag ggaaaccgcc gtctcatcga
     4321 acacctgctg tcggaatgac atgtgcatga catgggcatg acaccgcagt gactcgcatc
     4381 cttggcatcg agacgtcgtg cgacgaaacg tcagccgcaa tcgtcgacga tgcgaacggc
     4441 gctccggagc tgcgctcgct ggtcattctg tcgcaggatg tgcatcgggt gttcggagga
     4501 gtcgtccccg ag
//
LOCUS       DATIMD010000563         1771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4275783, whole genome shotgun sequence.
ACCESSION   DATIMD010000563 DATIMD010000000
VERSION     DATIMD010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4275783"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..902
                     /locus_tag="VLI40_12605"
     CDS             <1..902
                     /locus_tag="VLI40_12605"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HSU98065.1"
                     /translation="LVSDVATEYLQLRELDESMRIAEATRAAGQAVLELARSRFAQGQ
                     ISELDVRQFEAQVADPAARLAQFALQRRQQENALSLLLGQAPGSIPRGGPMQDVIQAV
                     TVPDSLPGALIARRPDVMRAQRDMQASLARVGVSVANRLPTITVGGDYGSQRPEVNKL
                     FTRPGEIYTLQAGLSFPIFTGGRLLNEERAARARADESKAQYQQTVLTALREASDALA
                     GVRLGRDQLVAQQTQARALTIAASIAERRYASGVSSYLEVLSAEQSLFNAQLNLVAVE
                     QQYLTATVQLYKALGGSWDGMGK"
     gene            complement(999..>1771)
                     /locus_tag="VLI40_12610"
     CDS             complement(999..>1771)
                     /locus_tag="VLI40_12610"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSU98066.1"
                     /translation="GSHLTVRMDDGETASARCVLIATGASYRKLDVADRERFEGVGVY
                     YVATKTELDACGGADVVIVGAGNSAGQAAVFLAQNTRKVFILVRRDSMRQTMSSYLID
                     RIEAASNIEVLYTTQIRELHGDSRLESVVVENTTTGERRTIATPAVFTLIGAIPHTDW
                     LPAQIDTDPKGFVCTGRQLANTPGWTRKRQPFLLETSQAGVFAAGDVRLGSAKRVAAA
                     VGEGSMAVKFVHEYLAELREDPQPELVTDVPVESRTRT"
BASE COUNT          318 a          538 c          596 g          319 t
ORIGIN      
        1 cgctcgtgag cgacgtggca acggagtatc tgcagttgcg tgagctcgac gagagcatgc
       61 gcatcgccga ggcgacgaga gcagcggggc aggcggtact cgagcttgca cgcagcagat
      121 tcgcgcaggg ccagatttcc gagctggacg tacgccagtt cgaggcgcag gttgccgatc
      181 cggccgcgcg actcgcgcaa ttcgcattgc agaggcggca gcaggagaac gcgctgtcgc
      241 tgctgctggg tcaggcgccg ggatcgattc cgcgcggtgg cccgatgcag gacgtgatcc
      301 aggcggtcac ggttcccgat tcgcttccgg gcgcgctgat cgcgcgacgt ccggatgtga
      361 tgcgcgccca gcgcgacatg caggcatcgc ttgcgcgtgt aggagtctcg gtggcgaaca
      421 ggcttcccac gattacggtt ggtggagact atggttcgca acgaccggag gtgaacaagc
      481 tcttcacacg accgggtgag atctacacgc tccaggccgg actgtcgttc ccgatcttca
      541 ctggcggccg cctgctcaac gaggagcgtg cagcgcgtgc gcgcgccgac gagagcaagg
      601 cgcagtatca acagactgtc ctgacggcgc tgcgcgaagc gagcgacgcg cttgcgggtg
      661 tgcggctggg cagggatcag ctcgttgcgc aacagacgca ggcgcgcgca ctgacgatcg
      721 cagcatcgat cgccgagcgg agatacgcga gcggcgtgtc gagctacctc gaagtgttga
      781 gtgccgagca gagcctgttc aacgcacagc tgaatctggt cgcggtggag cagcagtatc
      841 tcacggcgac tgtgcagttg tacaaggcgc tgggtggaag ctgggacggg atgggaaagt
      901 aaggcattcg cgctcgtaga acgtagcagt cgtcaagcac cgcaacatgg attcccgcgt
      961 tcgcgggaat gacgacggac acatggattc ccgaggcgct acgttctcgt gcggctctcg
     1021 accggcacgt ccgtcaccag ttccggctgc ggatcttcgc gcaactcggc gaggtactcg
     1081 tgcacgaact tgaccgccat cgagccctcg ccgacggccg ctgctactcg cttggctgag
     1141 ccgagtcgca cgtcgccggc ggcgaacacg cccgcctgac tcgtttccaa caggaacggc
     1201 tggcgcttgc gcgtccagcc gggagtgttg gcaagctggc ggccggtgca cacgaatccc
     1261 ttggggtccg tgtcgatctg cgcgggcaac cagtcggtgt gtggtatggc accgattagc
     1321 gtgaagacgg ccggcgtggc gatcgtgcgc cgctcgcctg tcgtggtgtt ttcgacgacc
     1381 acgctctcga gccgcgagtc accatgcagc tcgcgaattt gcgtggtata gaggacctca
     1441 atgtttgacg ctgcctctat tcgatcgatg agatagctcg acatggtctg tcgcatgctg
     1501 tcacgacgca cgaggataaa gactttgcgc gtgttctgcg ccaggaacac tgccgcctgg
     1561 ccggcggagt tgccggcgcc cacgattacc acgtcggcac cgccgcatgc gtcgagctcc
     1621 gtcttcgtcg cgacatagta gacaccaacg ccttcgaacc gctcacgatc ggcaacgtcg
     1681 agcttgcgat agctggcacc cgttgcgatc aggacacacc gagccgacgc ggtctcaccg
     1741 tcgtccatgc gtactgtaag gtgtgatcct t
//
LOCUS       DATIMD010000564         5012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3409044, whole genome shotgun sequence.
ACCESSION   DATIMD010000564 DATIMD010000000
VERSION     DATIMD010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5012
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3409044"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            362..1630
                     /locus_tag="VLI40_12615"
     CDS             362..1630
                     /locus_tag="VLI40_12615"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98067.1"
                     /translation="MHQNIRWLALSALLCGYVPTGIVVAQSTAAGAPGISTRSAFAPP
                     SLLAPFKTGDQYFNVDASGALLVRGGENAAPRMLLPAGSFSTVAPSPNGRYVAYGVGA
                     PDAAAYQVRVRDVRTGRDLPDVLHTARISPAPWSHDEKGFLYVRRDSTSGRERIYYHG
                     IGRAEASDALIFSQFDHPEWRYAARISDDGRYAVFTISYPADSHTRIYFIDLDDPGKP
                     NFGAPVVKLVQSFDSRYEFVDNAGSYFFLQTDRDAPLGRIILANTDVIRETRWPSLIP
                     QADDTLLFARTAGDEYLVAVYRSATGATTAKLYGPQDPSVLRNEIRNRMDSLKKARDK
                     NGDNRRPDRGLGPRGLMGAGPAIRLDPRSDLPIPAGASVIAMNSVADDSQLFYTVKLS
                     DGRVQSFVYDVKRSTNQPFPEPAANPSPGK"
     gene            1627..2223
                     /locus_tag="VLI40_12620"
     CDS             1627..2223
                     /locus_tag="VLI40_12620"
                     /inference="COORDINATES: protein motif:HMM:NF014389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HSU98068.1"
                     /translation="MMALLPFLALFASAVRSVVAVAVVILAIAFLLDWLVRTRRINPF
                     HPMARVVRRFVDPLVTPIERRIVRAGGSPSSAPIWALVGAVFIGIVIISGLDFVLQGL
                     VSMIFAASSGPLGLFVMLVRLTFDILRLAIIIVVLVSWLPISPFSAWVRWAFAITEPL
                     LRPLRDIVPRLGMFDITPIVAYFLLGILEWAFLRMAGM"
     gene            2409..>5012
                     /locus_tag="VLI40_12625"
     CDS             2409..>5012
                     /locus_tag="VLI40_12625"
                     /inference="COORDINATES: protein motif:HMM:NF014615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HSU98069.1"
                     /translation="MTTSSSSDGSHSSAYLAALADRVLVYDGAMGTNIQRYHLTPDDF
                     GGKALEGCNDNLVLTRPDVIQEIHESFLAVGCDVVETCTFQSTPRRLEEWGLLDKAHD
                     LNVKAAQLARAACDKFATPDRPRFVAGSMGPTGMLPSSTDPVLSRVTFEELASNYCAQ
                     AKALIEGGVDVLLIETSQDILEVKAAVVGIERAFGEMGKRVALQAQVTLDVSGRMLLG
                     TDIASAMTTLESLHVDVIGLNCSTGPEHMREPIRFLAENATLPLSVIPNAGLPLNTGT
                     GDAIYPLEPAPMADALGEFVRDFGVRVVGGCCGTTPEHLAAIVTRVNELRSPGAKPAS
                     REREEPRLPMVSSAMRATSLRQTPPPLIVGERVNAQGSRRVKRFLLAEDYESIVEVGR
                     EQVDSGAHVLDVCVAVTERSDEAEQMSQVVKLLSMGVEAPLMIDSTEANVVAAALEHV
                     PGRAIVNSINMENGRKRIESIVPLVKKHGAAVVALTIDEIGMAKTRERKLEVARKIYD
                     IAVGEYGLAPEDLLYDALTFTLATGDAEWIDSAAETIEGIRLIKRELPGVGTILGVSN
                     VSFGLTTEARSVLNSVFLHHCVQAGLDAAIVNPAHIRPYAEISAAERAVADDLVFNRR
                     PDALQMFIEYFSAAPESSASGPAAKEDPTAGMTADEKIHWMVLHRKKEGIEDALDAAN
                     VRTDPVRVLNGVLLPAMKDVGDKFGAGELILPFVLQSAEVMKKAVQHLEKFLEKSEGY
                     TKGRVVLATVYGDVHDIGKSLVNTILSNNGYTVYDLGKQVPVNTIIEKAIEVDADAIG
                     LSALLVSTSKQMPLCVQELDKRGIHIPVMIGGAAINRRFGRRAMFVDGERPYDAGVFY
                     CKDAFEGLDTMD"
BASE COUNT          889 a         1535 c         1586 g         1002 t
ORIGIN      
        1 atcgcccttc ttcatgtcgt cgcgcatgaa gtttcgggcc tgatagttac gtacaccgct
       61 ccagtgggtc gtctggcgcg gtgaggccag caggtcatcg tacgagaagc aggttggctc
      121 actcttgaga agccagtagc ggcggtcctt cgattcgggc attggtacgg tcgattgttg
      181 gttccgattc agcatcgtgc agtcgacgga aatctatggc gttcgtccgg tgctgaacgg
      241 ccgccgccgg tgtatcaacc cccggtcatg cagcacgcgg tcgcagagta cagctcgcag
      301 agtacggctg cctgttgccc gacgcatgtt accgtagatt cagacgcaac caatccatcc
      361 aatgcaccaa aacattcgct ggctggctct ctccgcactg ctctgtggtt acgtcccgac
      421 aggtattgtc gtggcgcaga gtaccgcggc tggcgctccg ggtatctcga cacgctcggc
      481 tttcgcgccg ccaagcctgc tcgcaccgtt caagacaggc gatcagtact tcaacgtgga
      541 cgcatcgggc gcgttgctcg tgcgaggcgg ggagaacgcc gcacctcgca tgctgctccc
      601 cgcgggcagc ttctccacag tcgccccgtc gccgaacggc cgatacgtcg catatggagt
      661 cggtgcgccg gatgcggcgg cctatcaggt tcgcgttcgc gacgtgcgga cgggacggga
      721 tcttccggac gtgttgcaca ctgcgcgcat ctcgccggca ccctggtctc acgacgagaa
      781 gggctttctt tacgtgcggc gggattcgac gagtggacgt gagcgtatct actatcacgg
      841 aattggccgc gccgaggcga gcgacgctct gatcttcagt cagttcgatc accccgagtg
      901 gcgctacgcg gcgcgcataa gcgacgatgg tcgctacgcg gtgttcacca tttcgtatcc
      961 ggccgactcg cacacgcgca tctacttcat cgatctcgac gatcctggca agcccaactt
     1021 tggcgcgccc gtcgtgaagc tcgtgcagtc gttcgattcg cgctacgagt tcgtggacaa
     1081 tgccggcagc tacttcttcc ttcagactga ccgcgatgcg ccactcggca gaatcattct
     1141 cgcgaacacc gatgtgattc gcgagacacg ctggccttcg ctcattccac aggcggacga
     1201 cacgctgttg tttgcaagga cggcgggcga cgagtatctc gtcgcggtgt atcggtcggc
     1261 gaccggtgcg acgaccgcca aactttacgg cccgcaggat ccgtcggttc ttcgaaacga
     1321 gatacgcaat cgcatggatt cgctcaagaa ggcgcgcgac aagaacggcg acaatcgtcg
     1381 cccggacaga gggctcgggc cgcgcgggct gatgggagcc ggaccggcca tccgcctcga
     1441 cccgcgcagc gacctgccga ttccggccgg agccagtgtc atcgcgatga actcggtcgc
     1501 cgacgactcg caactctttt atacggtaaa gttgtctgat ggaagggtgc agtcgttcgt
     1561 gtacgacgtg aaacgatcga ccaaccagcc ctttccggaa ccagccgcga atccttcacc
     1621 tggtaaatga tggccctgct tcctttcctt gctcttttcg ccagcgcggt ccgctcggta
     1681 gttgcggttg ccgtcgtcat cctcgcgatc gcctttctgc tcgactggct ggttcgtacc
     1741 aggcggataa acccgtttca cccgatggcg cgggtcgtcc gccgcttcgt cgatccgctc
     1801 gtgactccca tcgagcgccg catcgtacgc gcgggtggca gcccgagctc ggcgccgatc
     1861 tgggctctgg tcggcgcggt gttcatcggt atcgtgatca tcagcgggct ggatttcgtg
     1921 ctccagggtc tcgtgtcgat gatcttcgcg gcctcgtcgg ggccgctggg actcttcgtg
     1981 atgctggtgc ggctcacgtt cgacatcctg cgtctcgcga tcatcatcgt ggttctcgtt
     2041 tcgtggctgc cgatatcgcc attctcggcg tgggtacgct gggcattcgc cattaccgag
     2101 ccactcctcc ggccgctccg tgacatcgtc ccccggctcg gcatgttcga catcacgccg
     2161 atcgtcgcgt atttcctgct cgggatcctg gagtgggcct tcctgcgcat ggcagggatg
     2221 taaacttcat ccgtccatcc ggcttatcgg atggacggcc ccttgtcccg cgcggcgttc
     2281 ggggctatcg ttcgagacaa ccgatacccg tggcgatttc aggcaaattg cggccacgtt
     2341 aaacattcgc taaagcgccc ctcttggccc ggcgctccct gccgggcctc ttttgtatct
     2401 acggtggtat gactacttca agttcttccg acggctctca ttcctcggcc tacctcgccg
     2461 cactcgccga tcgcgtcctc gtctacgacg gcgcgatggg taccaatatc cagcgctacc
     2521 atctcacgcc tgacgatttc ggcggcaagg cgctcgaagg atgcaacgac aacctggtgc
     2581 tcacgcgacc cgatgtgatc caggaaattc acgagtcgtt cctcgcggtg gggtgtgacg
     2641 tcgtcgagac ctgcaccttt caatcgacgc cgcgccggct cgaagagtgg ggactgctcg
     2701 acaaggcgca cgacctgaac gtgaaggccg cgcagcttgc ccgcgccgcg tgcgacaagt
     2761 tcgcgacacc ggaccgtccc cgattcgtgg cggggtcgat ggggccgacg ggaatgcttc
     2821 cgtccagcac cgacccggtt ctgtccaggg tcaccttcga ggagctcgca tcgaactatt
     2881 gcgcgcaggc gaaggcgctc atcgagggcg gtgtggacgt gctcctcatc gaaacgtcgc
     2941 aggacatcct cgaagtaaag gccgcggtcg tcggcatcga gcgcgcgttc ggtgagatgg
     3001 gtaaacgcgt cgcattacag gcgcaggtga cgctcgacgt gagtggccgc atgctgctcg
     3061 gcaccgacat cgcaagcgcg atgacgacgc tcgagtcgct gcacgtggat gtgatcggcc
     3121 tgaactgctc gaccggtccc gagcacatgc gcgagccgat acgtttcctc gccgagaacg
     3181 cgacgctccc actgtcggtc attccaaatg cgggccttcc gctcaacacc ggaaccggtg
     3241 acgcgatcta tccgctcgag ccagcgccga tggctgacgc actcggcgag ttcgtgcgcg
     3301 atttcggagt gcgtgtggtg ggcggctgtt gcggaacgac acccgagcac ctggccgcga
     3361 tcgtcacgcg tgtgaacgag ttgcgctcac ccggagcgaa gcccgccagc cgcgagcgcg
     3421 aggagccgcg ccttccgatg gtctcatcgg cgatgcgcgc tacctcgctg cgccagacgc
     3481 cgccgccctt gatagttggt gagcgcgtga acgcgcaggg ctcgcgccgc gtcaagcgct
     3541 tcctgctcgc cgaggactac gagtcgatcg tggaagttgg gcgcgagcag gtggattcag
     3601 gtgcgcacgt gctggacgtg tgcgtggcag tgaccgagcg atcggacgaa gccgagcaga
     3661 tgtcgcaggt cgtgaagctg ctgtcgatgg gcgtcgaagc gccgctcatg atcgactcca
     3721 ccgaggcgaa cgtcgtcgct gccgcgctgg agcacgtccc cggccgcgcg atcgtgaact
     3781 cgatcaacat ggagaacggc cgcaagcgta tcgaatccat cgtgccgctc gtgaagaagc
     3841 acggcgcagc cgtcgtcgcg ctgacgatcg atgagatcgg catggccaaa acgcgcgagc
     3901 gcaagctgga agtcgcgcgc aagatctacg acatcgcagt tggtgagtat ggacttgcgc
     3961 cggaagatct gttgtacgac gcgctcacat tcacactcgc gactggcgat gcggagtgga
     4021 tcgattcggc cgctgaaacc atcgaaggga tcaggctcat caagcgcgag ctgcccggtg
     4081 tcggaacgat cctcggtgtt tcgaacgtgt cattcggatt gactaccgaa gcacggtcgg
     4141 tgctcaattc ggtattcctg catcactgtg tgcaggcggg gctggacgct gcgatcgtga
     4201 atccggcgca catcaggcca tatgcggaga tttctgctgc ggagcgcgcg gtcgccgacg
     4261 atctcgtgtt caatcgcagg cctgatgcgc tgcagatgtt catcgaatac ttctcggcgg
     4321 cgccggagtc cagcgcgtcg ggtcccgcgg ccaaggaaga tccgaccgct ggcatgacag
     4381 ctgacgagaa gattcactgg atggtgctgc atcgaaagaa ggaaggaatc gaggacgcgc
     4441 tcgatgccgc gaacgtgcgc acggatccgg ttcgcgtact gaatggcgtt ctgcttccgg
     4501 cgatgaagga cgtcggtgac aagttcggtg ctggcgaact cattcttccg ttcgtgttgc
     4561 agtcggccga ggtgatgaag aaggccgtcc agcatctgga gaagttcctg gaaaagagcg
     4621 agggttacac caagggccgc gtggtgctgg cgacggtgta cggcgacgtg cacgacatcg
     4681 ggaagtcgct cgtcaacacg atcctgtcga acaacggcta cacggtgtac gacctgggca
     4741 agcaggttcc ggtgaacaca atcatcgaga aagcgatcga ggtcgatgcc gatgcgatcg
     4801 gactgagcgc actgctggta tcgacgtcca agcagatgcc gttgtgcgtg caggagctgg
     4861 acaagcgcgg catccacatt cctgtcatga tcgggggcgc cgcaatcaac aggcgttttg
     4921 gacgtcgcgc aatgttcgtg gacggtgagc gcccgtatga tgccggggtt ttctactgca
     4981 aggatgcgtt cgaagggctc gatacgatgg at
//
LOCUS       DATIMD010000565         2729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3982376, whole genome shotgun sequence.
ACCESSION   DATIMD010000565 DATIMD010000000
VERSION     DATIMD010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3982376"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..740)
                     /locus_tag="VLI40_12630"
     CDS             complement(<1..740)
                     /locus_tag="VLI40_12630"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSU98070.1"
                     /translation="MLSRVALILSLPLTAVSAAAQQSTQRPLPSADFDAYVASALRTF
                     DAPGAAIAIVKDGKVVFAKGYGVKKLGSPAPIDTHTLFQIASNTKAFTTASLAMLVDE
                     GKLKWDDPVTKYLPWFQLSDPYVTRELTVRDLITHRSGLGLGAGDLLWLHSNYSRDEV
                     LHRIRYARVASSFRSRYAYDNVLYAAAGEVVAAASGKPWDVFVRERILQPLGMTGTLT
                     GVAELSPSADMASPYSMIDGREQLISLDS"
     gene            complement(813..1706)
                     /locus_tag="VLI40_12635"
     CDS             complement(813..1706)
                     /locus_tag="VLI40_12635"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase family protein"
                     /protein_id="HSU98071.1"
                     /translation="MPHRRRATRIFIPLLALAAGCATTSPYVRHESAHVETDSVNAAS
                     LGRRVAYNVVLPSGYASGKRYPVLWLLHGYSGGKDDWLRRTDLLKEIEQYPFIVVLPD
                     AKNSWYVNAPSDPGAAYETFITVDLYNDVIRRFSVDTMRQAIAGLSMGGYGAVMLGMR
                     HPHRYRFVGGLSAALSVASAMGQSDSVLWKGTGKSITKAFGTGGVASEAQYDPLRIFR
                     NTQPDSLPYIFLAIGTHDDYPSFLPSNRALTDSLRAYGARYEYHEIPGRHSWAVWGEE
                     LEPMLNSAWRVLHPDAGAERR"
     gene            complement(1713..2327)
                     /locus_tag="VLI40_12640"
     CDS             complement(1713..2327)
                     /locus_tag="VLI40_12640"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSU98072.1"
                     /translation="MLGTRKCVAMVMIAAGSTLSASVAAAQGGSIIDPISFGISGGVS
                     VPTGDLANGDGRFTGVNTGYNVTGSLGVSLPVVPFSLRGDIAYDGFGTKNVSLAANNN
                     PATGAFNADVRIIGFTANVVFPVHLPFPIVRPYLIGGGGVYNVRTSPTTGGSTSQSNF
                     GFNIGAGVSVPFVLFNGFIEARYHDVSQNHADLSFVPITVGVMF"
     gene            complement(2327..>2729)
                     /locus_tag="VLI40_12645"
     CDS             complement(2327..>2729)
                     /locus_tag="VLI40_12645"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU98073.1"
                     /translation="VETEMLGDRNALATIAVSDIEVARKFYEETLGFQHKGPRRRGVL
                     AYSSGATTFLVYASQYAGTNQATSASWDAGDDMDSIVKTLRTKGVTFEHYYDMPDTTL
                     EGDIHVSGGMRTAWFKDPDGNILNLFSSGEK"
BASE COUNT          542 a          819 c          815 g          553 t
ORIGIN      
        1 gaatcgagtg agatgagctg ctctcgtcca tcgatcatcg agtacggcga cgccatgtct
       61 gcgcttggag acagttctgc aacgccggtc agtgtcccgg tcatgccgag cggctgaagg
      121 attcgttcgc gcacgaatac atcccacggc ttgccgctcg ccgcggcgac gacttcaccc
      181 gcagcggcat acagcacgtt gtcgtacgca tacctgctac ggaagctcga cgcgacgcgc
      241 gcataccgta ttcggtgcag tacctcgtcg cgcgagtaat tcgaatgcag ccagagcagg
      301 tcgccggcgc cgagtccgag gccgctccgg tgagtgatga ggtcgcgcac cgtgagctcg
      361 cgcgtgacgt acgggtccga gagctgaaac cagggcagat atttggttac gggatcgtcc
      421 cacttgagct tgccttcatc gacgagcatc gcgagcgacg cggtcgtaaa ggcttttgtg
      481 ttggatgcga tctggaagag cgtatgcgtg tcgatcggcg ctggtgagcc aagtttcttt
      541 acaccgtacc ctttggcgaa cactaccttg ccatccttga cgattgcgat ggcagccccg
      601 ggcgcgtcga atgtcctcaa tgcgctcgcg acgtaggcat cgaaatcggc tgacggcaga
      661 gggcgttgcg ttgattgctg agcggcggcg ctaacggcag tcagtgggag cgatagaatc
      721 agggcaactc gtgacagcat gcatggctcc agcttctgtt cggcatcggc gttcgcaccg
      781 tgcgacgcgg gatgtggtgg agaacatgct tctcagcgcc gctctgcgcc agcgtctgga
      841 tgcaacacgc gccacgcgct gttcaacatc ggctccaatt cctcgcccca cacggcccac
      901 gagtgccgcc cggggatctc gtggtattcg taccgcgcgc cgtacgcacg cagcgaatcg
      961 gtgagcgccc gattgctggg cagaaagctc ggatagtcgt catgcgtgcc gatcgccaga
     1021 aatatgtacg gcagactgtc cggctgcgtg ttacgaaaga tgcgcaacgg atcgtactgc
     1081 gcttctgacg ccacgccgcc ggttccgaat gccttcgtga tgctcttccc ggttcccttc
     1141 cacaacaccg aatccgactg gcccattgcg ctcgcaacag agagcgcggc actcagtccg
     1201 ccgacaaaac gataccgatg cggatggcgc atgccgagca ttacggcacc gtatccgccc
     1261 atcgagagtc cggcgatcgc ctgacgcatc gtgtctacgg agaaacgccg gatcacgtcg
     1321 ttgtagagat ctacggtgat gaaagtctcg tacgccgcac ccggatccga cggtgcgttt
     1381 acgtaccacg agtttttcgc gtcaggcaat acgacgatga acggatattg ctcgatttcc
     1441 ttcaacagat cggtgcggcg cagccagtca tccttgccgc cggaatagcc gtgaagcagc
     1501 cacaggactg gataacgctt gccggatgcg tatccggaag gcagaacgac attgtacgcc
     1561 acgcgtctgc caagcgacgc agcgttgacg gagtcggttt ctacatgagc cgattcatga
     1621 cgtacgtatg gcgacgttgt tgcgcagccg gcggcaagcg ccaggagtgg gatgaatatg
     1681 cgcgttgcgc gccgcctgtg gggcattatg ccctagaaca taacaccgac cgtgattggc
     1741 acaaacgaca ggtcagcgtg gttctgactc acatcgtgat agcgcgcttc gatgaacccg
     1801 ttgaacagca cgaacgggac ggatacaccg gcgccgatgt tgaacccgaa attgctctgt
     1861 gacgtgcttc cgccggtggt cggcgacgta cgtacattgt acacaccgcc gcctcctatg
     1921 aggtatggcc gcactatagg gaacggtaga tggacaggga atacgacgtt cgccgtgaag
     1981 ccgattatgc gcacgtctgc attgaaggcg cccgttgcgg gattgttatt ggctgcaagc
     2041 gagacatttt ttgtgccgaa accatcgtat gcaatgtctc cgcgcagact gaatggcacc
     2101 accggaagcg agacgcccag ggaccccgtg acgttgtagc cggtgttgac gccggtaaac
     2161 cgaccgtcgc cgttagccag gtcgcctgtc gggactgaaa cgccgcctga tatcccgaac
     2221 gagatcgggt ctatgatgga tccgccctgc gcggcagcga cggaggcact gagtgtgctt
     2281 cccgcggcga tcatcaccat cgcaacacac tttcgagtac cgagcatcac ttttccccac
     2341 tactgaacag gttgagaatg tttccgtcgg gatccttgaa ccacgcggtg cgcatgccac
     2401 ccgagacgtg tatgtcgcct tccagcgtcg tatctggcat gtcgtaatag tgctcgaacg
     2461 tcacgccctt ggtacgcaat gtcttgacga tgctatccat atcgtcacct gcgtcccaac
     2521 tcgccgacgt cgcctgattc gttccggcat actgggaggc atagacgaga aacgtggtcg
     2581 ccccgctgct gtacgcgagt acgccacgcc gccgcggacc cttgtgctgg aagccgagcg
     2641 tctcctcgta gaatttcctg gcgacctcga tgtcgctgac cgcgatcgtg gcaagggcgt
     2701 tcctgtctcc cagcatttcc gtctccact
//
LOCUS       DATIMD010000566        10031 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1971494, whole genome shotgun sequence.
ACCESSION   DATIMD010000566 DATIMD010000000
VERSION     DATIMD010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 10031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10031
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1971494"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..186)
                     /locus_tag="VLI40_12650"
     CDS             complement(<1..186)
                     /locus_tag="VLI40_12650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98074.1"
                     /translation="MSGTADGQALLARIGGRARPAGSRAEADARAVCAAWLSDAGFVV
                     DQRPFNYSAFPGTWGTPI"
     gene            complement(190..1164)
                     /gene="trpS"
                     /locus_tag="VLI40_12655"
     CDS             complement(190..1164)
                     /gene="trpS"
                     /locus_tag="VLI40_12655"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HSU98075.1"
                     /translation="MARVFSGIQPSGELHIGNYLGAVRNWVELQHRYESFFSIVNYHA
                     ITIPYEPADLLRRTRDMAISLLASGIDPEKCALFVQSEVSEHTELAWIFNTVTPLGEL
                     ERQTQFKDKASRQESIFAGLLNYPVLQAADIALYQSDLVPVGEDQVQHLELAREIVRR
                     WNSKFGSEFFVEPKPLLTPTRRIMGLDGQAKMSKSLGNTIGLLEEPAAIWEKLRPAVT
                     DPARVKKTDPGTPEVCNIYHIHKAFSSPATVEHVAQQCTTAGWGCIDCKRVLQTSMET
                     ELGPIRDRAADLRNAPERVDDALSTGAARARAVASATLKETKQIMGLR"
     gene            1183..2034
                     /locus_tag="VLI40_12660"
     CDS             1183..2034
                     /locus_tag="VLI40_12660"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HSU98076.1"
                     /translation="MTTTQASVPYSDEIVAKILDAMIVAARAAEDVIVAGAARRGDLV
                     WETKGAADYLTEIDTSSEAVIRHEIAAALETDFPQLPILGEESWRDEPLPRGLAFVVD
                     PLDGTTNFLHGIPAYSVSIAAIHDTEPILALVLDIPRGEMFTAVRGFGARLNGTPIRV
                     SEITDPEKALIGTGFPFGENADAVRYARQFIPIAETTSGIRRVGSAAIDLAWIAAGRY
                     DAFWELHLSPWDIAAGVLLVREAGGVITGIDGVPATIETSPLVAGNPIMYAWLLDVLN
                     NADAAAP"
     gene            2059..3573
                     /gene="ftcD"
                     /locus_tag="VLI40_12665"
     CDS             2059..3573
                     /gene="ftcD"
                     /locus_tag="VLI40_12665"
                     /EC_number="2.1.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR02024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030409 - glutamate formimidoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0030412 - formimidoyltetrahydrofolate
                     cyclodeaminase activity [Evidence IEA];
                     GO_process: GO:0019556 - histidine catabolic process to
                     glutamate and formamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate formimidoyltransferase"
                     /protein_id="HSU98077.1"
                     /translation="MKLIECVPNFSEGRDLHAIDAIRDRIAAVPGVSVLHVTSDAWHN
                     RSVITFVAPAQNMADAAVAAIRAARDHIDLTRHEGVHPRIGAADVVPFVPLEGATMED
                     CIAIAREVGRRVGDELKIPVYLYERAATRASRRNLAEVRRGGFEGLRDAIESDPDRAP
                     DFGPARVHPTAGAVAVGARPFLIAFNAYVGDSSNLRAARDIARAIRESSGGLRGVKAL
                     GLEVNGQAQVSMNLVDIDQTSLAAAYAAVQREAHERGLDVVWSELIGLVPERVAFDVS
                     SRALKLRDDIGAHVLERIVLARRAEQSLSDYVESVASPDAVPGGGSVAAIAGALGAAL
                     VSMVAGLTVGRARYASVDAEMPEIQTGAMDVARELQALALRDAEAYARVTDARKLPHR
                     NPDEAAARDSAIHNALLGAIDVPLAVARCAARVVMLVSTVAERGNSNAISDAGVAALL
                     ASAACTGACYNVRVNASGLRDSADADRAVGEAIALAAETEALAASVARSVSGAI"
     gene            complement(3625..4383)
                     /gene="map"
                     /locus_tag="VLI40_12670"
     CDS             complement(3625..4383)
                     /gene="map"
                     /locus_tag="VLI40_12670"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HSU98078.1"
                     /translation="MIQLKSAREIEIMARGGQILAAAVRLAETDTHAGMSTLDVDHMV
                     EEFIRSHEGALPSFKGLYGFPASVCASINDEIVHGIPSAKRVIRDGDIVSIDVGVLLD
                     GYHTDAATTIAVGNVGAESLRLLDVTRKALAAGIAAAQPDNHVGDIGAAVQEVVERAG
                     FNVTRDLVGHGIGTTFHEDPQVPNYGKPKRGVKLTAGLTIAIEPMVMIGSHKTRQLPD
                     QWTVVTADKSRAAHFEHTVAITAQGPRVLTQLAA"
     gene            complement(4410..5063)
                     /locus_tag="VLI40_12675"
     CDS             complement(4410..5063)
                     /locus_tag="VLI40_12675"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: protein motif:HMM:NF001381.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HSU98079.1"
                     /translation="MIIVLLGPPGAGKGTQGELLAARLAIPKIATGDLFRAAVRQGTP
                     LGLEAKQFMDRGDLVPDSVILGILREAIASPEAAQGAILDGAVRTVPQAEGLAEALAS
                     IGRKVDAVLLFEANHAELIRRLSARTTCDVCQTPFKGLEPGTACPRGDGGRLIRRKDD
                     EPEAIQNRLNVYEELTAPVVEWYDAHGVPVQRIDAIGDVTDVTARAAQALQTVQLAS"
     gene            complement(5079..6410)
                     /gene="secY"
                     /locus_tag="VLI40_12680"
     CDS             complement(5079..6410)
                     /gene="secY"
                     /locus_tag="VLI40_12680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HSU98080.1"
                     /translation="MAQTNPASAVADITRNTELWDKIKFTFLCLVLYRLGSHITAPGI
                     DVVALTDFFANKGGGGLLGLYDLFVGGGLSRATVFALGIMPYISASIFIQIAGAVLPQ
                     VEKMQKDEEGRKTINQWTRYITIALAVVQGWGFALFTSSLENAVITPGFAFKLQMVLF
                     LTTGAIFVMWLGEQITERGLGNGASLIIFFSIVERFWPGILDTFKFVTTQAIGPFSLI
                     ILGFVMVAVVAGTIAITIAARRIMIQIPQRTMSRGRQREASRNFIPLRINTAGVMPII
                     FAQSVIVIPGAFAQFSGNPFMQQVSERMQPGTWLYFVLSAILIVFFTYFYTAIIFNPV
                     DIAENLKKQGGFIPGVKPGAKTAEYVDSVISRITFPGAIFLTFIALLPMFIGSMINVP
                     FVFGGTSLLIVVGVALDTMAQINQHMLLRKYDGFMKKGRVRFRGQNSFAGY"
     gene            complement(6577..7020)
                     /gene="rplO"
                     /locus_tag="VLI40_12685"
     CDS             complement(6577..7020)
                     /gene="rplO"
                     /locus_tag="VLI40_12685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HSU98081.1"
                     /translation="MGLHNLSSAPGSSRNRKRIGRGPGSGTGKTSGKGHKGIKARSGH
                     HGPGGGKPQFEGGQMPLTRRLPKRGFTSPFRVESQVVRLGDLARFEGREITNELLVEA
                     GMIHGGKGPAKVLANGEITQAVTVRGLKVSSGAREKIVAAGGTVA"
     gene            complement(7036..7212)
                     /gene="rpmD"
                     /locus_tag="VLI40_12690"
     CDS             complement(7036..7212)
                     /gene="rpmD"
                     /locus_tag="VLI40_12690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HSU98082.1"
                     /translation="MKQVRSKIGHSWRMRRTLEALGLKHPHDVVIHQDSAALRGQIKR
                     VRHLVTIAAAKEEA"
     gene            complement(7296..7793)
                     /gene="rpsE"
                     /locus_tag="VLI40_12695"
     CDS             complement(7296..7793)
                     /gene="rpsE"
                     /locus_tag="VLI40_12695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003328273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HSU98083.1"
                     /translation="MENVVAINRVAKVVKGGRRFSFNALVAVGDGQGRVGFSTGKANE
                     VSEAVRKAVEAARRHMVAVPMTGGTIPHSIVGQHGAGKVLMKPAAPGAGVIAGGAVRA
                     VMECVGITDILTKSLGSTNPHNMVLAALDALAKLTTVEQIARERGIEQSSLGYRSRAK
                     VKVVA"
     gene            complement(8105..8452)
                     /gene="rplR"
                     /locus_tag="VLI40_12700"
     CDS             complement(8105..8452)
                     /gene="rplR"
                     /locus_tag="VLI40_12700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006784446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HSU98084.1"
                     /translation="MKKPQTREQYRARRHFRVRKKVNGTAERPRLVVFRSEKHIYAQL
                     VDDNTQHTLMTVTDGGITGKKVEKSFEVGKKIAARAKEAGVTSVVFDRGGYVYHGRVK
                     AVADGAREGGLEF"
     gene            complement(8456..8995)
                     /gene="rplF"
                     /locus_tag="VLI40_12705"
     CDS             complement(8456..8995)
                     /gene="rplF"
                     /locus_tag="VLI40_12705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008372550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HSU98085.1"
                     /translation="MSRIGKKPVPVPANVTVTVDGNNVKVKGPKGELERTLHSDMKVS
                     MENGEVVVARPSDEQKHKALHGLSRTLVANMVEGVSTGFSKTLELVGVGYKAEVRPYG
                     LQLALGFSHPVEYKSPKGIKLSAPQPTQIVVEGANKEIVGQVAAELRSLRPPEPYKGK
                     GVKYQGEQVRRKAGKAGGK"
     gene            complement(9007..9411)
                     /gene="rpsH"
                     /locus_tag="VLI40_12710"
     CDS             complement(9007..9411)
                     /gene="rpsH"
                     /locus_tag="VLI40_12710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016281716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HSU98086.1"
                     /translation="MSMTDPIADMLTRIRNACRAKHRRVDMPASKVKSQIAQILKENS
                     YIQDYRTLETEEGRQILRVILKYAAGTGQPVIRDLQRVSTPGLRRYVGVTEIPRVRNG
                     LGMAILSTSQGVMSDRQARQHRTGGELVALVW"
     gene            complement(9588..9893)
                     /gene="rpsN"
                     /locus_tag="VLI40_12715"
     CDS             complement(9588..9893)
                     /gene="rpsN"
                     /locus_tag="VLI40_12715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HSU98087.1"
                     /translation="MAKTSKIKKNEQRRATVAKYAARRRELKAIIKNPTSTPDQRADA
                     YAAIRKMPRDASVVRIRNRCEFSGRPRAYLRQFGLARIAFRDMALAGFIPGVRKASW"
     gene            complement(9906..10019)
                     /locus_tag="VLI40_12720"
     CDS             complement(9906..10019)
                     /locus_tag="VLI40_12720"
                     /inference="COORDINATES: protein motif:HMM:NF012877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98088.1"
                     /translation="MDITFVTTTNKDDQALALLRELGMPFRGEEKPVIVHG"
BASE COUNT         1770 a         3272 c         3076 g         1913 t
ORIGIN      
        1 gatcggcgtc ccccacgttc cggggaacgc agaatagttg aacggacgtt gatccaccac
       61 gaagccggca tcgctcagcc acgccgcgca aacggctctg gcatcggcct cggcgcgaga
      121 tcccgcaggg cgcgcccgtc cgccgatgcg ggcgagcagg gcctggccgt ccgctgtgcc
      181 gctcaccccc tatcggagac ccatgatctg cttggtctcc ttcaaggtgg cactggcgac
      241 ggctctggcc ctcgcggcac cggtcgagag tgcgtcgtcg acccgctcgg gcgcattgcg
      301 caggtcagca gcgcggtcgc gaatcggacc cagctccgtc tccatcgagg tctgcagaac
      361 tcgcttgcag tcgatgcagc cccaacccgc cgtcgtgcat tgctgcgcga cgtgctcgac
      421 cgttgccggt gagctgaacg ccttgtggat gtggtagatg ttgcagactt ccggagtgcc
      481 gggatcggtc ttcttgacgc gcgccgggtc cgtaactgcc ggacgcagct tctcccagat
      541 cgccgcgggc tcctcgagca gcccgatggt attgccgagc gacttggaca tcttcgcctg
      601 cccatccagt cccatgatac gcctggtcgg cgtgagcaac ggcttgggct cgacaaaaaa
      661 ctcgcttccg aacttggagt tccagcgccg cactatttca cgcgcaagct cgagatgctg
      721 cacctgatcc tcgccgaccg gaacgagatc cgactggtac agcgcgatgt ccgccgcctg
      781 aaggacggga tagttcagca accccgcgaa aatactctcc tgccggctcg ccttgtcctt
      841 gaactgggtc tggcgctcca gctctccaag cggagtaacg gtgttgaaaa tccacgccag
      901 ctccgtatgt tcggagacct cggactgtac gaagagagcg cacttttcgg ggtcgattcc
      961 ggacgcgagt agcgaaatcg ccatgtcgcg agtgcgacgg agcagatccg ccggctcata
     1021 cgggatcgtt atcgcgtggt agttgacgat cgagaagaac gactcgtacc tgtgttgaag
     1081 ctctacccag ttccgcaccg cgccaaggta gtttcctatg tgcagctcac ccgagggttg
     1141 aatgccgctg aatacacgtg ccatgcgcga aatatacggg cgatgaccac cacgcaggca
     1201 tctgtcccat acagcgacga gatagtcgcg aaaattctcg atgcgatgat cgtcgccgca
     1261 cgtgccgcgg aggacgtgat tgtcgccgga gcggcgcgtc gcggtgacct tgtctgggag
     1321 acgaagggcg cggccgacta cctgacggag atagatacgt cgtcggaggc ggtgatccga
     1381 cacgagatcg ctgccgcgct cgagaccgat ttcccccagc tacccatatt gggcgaggaa
     1441 agctggcgcg acgagccgct cccgcgcggc ctggcttttg tcgtcgatcc gctcgacggt
     1501 actaccaact tcctgcacgg aattccggca tactcggttt caatcgccgc gatccatgac
     1561 accgagccga ttctcgcgct ggttctggac attccgcgcg gtgagatgtt caccgcggtg
     1621 cgtggcttcg gcgcgcggct caacgggaca ccgattcgcg tctccgagat cacggatccc
     1681 gaaaaggctc tgatcggcac cggatttcca ttcggcgaga acgccgatgc cgttcgctac
     1741 gcacgccagt tcattccgat agccgagacg acttcgggta tccggcgcgt cggctccgcg
     1801 gcgatcgatc tcgcgtggat cgcggctgga cggtatgacg cgttctggga gctgcatctg
     1861 tcaccatggg acatagcggc cggcgtcctg ctggtgcgcg aagctggtgg cgtcatcacc
     1921 ggcatcgatg gtgtgccggc gacgatcgaa acctcgccgc tggtggccgg caacccgatc
     1981 atgtacgcgt ggctgctcga cgtactgaac aacgcggacg ccgctgcgcc atgaagcgcg
     2041 caatatgaag tatccgacat gaagctcatc gaatgtgttc cgaacttctc cgaaggacgc
     2101 gacctccatg cgatcgacgc gatacgtgac cgcatcgccg cggtccccgg ggtttccgta
     2161 ctgcatgtaa cgtcggacgc ctggcacaac cggtcggtca tcaccttcgt tgcgccggct
     2221 caaaacatgg ccgatgccgc ggtcgccgcg attcgagcgg cgcgcgatca catcgacctt
     2281 acgcgacacg aaggagtgca tccgcgtata ggcgcggccg acgtggttcc attcgtcccg
     2341 ctcgagggag cgacgatgga ggactgtata gcaatcgcgc gcgaggttgg ccggcgggtc
     2401 ggcgatgagc tgaagattcc cgtctatctc tatgagcgag ccgcaactcg tgcgtcgcga
     2461 cgcaatcttg ccgaggtgcg gcgcggcggc ttcgaagggt tgcgcgacgc aatcgaatca
     2521 gatcctgacc gcgcgccgga cttcggccca gcgcgcgtgc atccaaccgc cggcgcagtg
     2581 gcggtaggcg cgcggccgtt tctgatcgcg ttcaacgcgt acgtcggcga cagcagcaat
     2641 ctccgcgcgg caagggacat tgcgcgtgcg attcgcgaat cgagcggagg cctgcggggt
     2701 gtcaaggctc tcggactcga agtgaacggc caggcgcagg tgtcgatgaa tctggtcgac
     2761 atcgatcaga cttcgctcgc ggccgcgtac gcggcagtgc aacgcgaggc gcatgagcgc
     2821 gggctggacg tcgtgtggag cgagctgata ggtctggtcc ccgagcgcgt tgcgttcgac
     2881 gtgtcatcca gagccctcaa gcttagggac gacatcggcg cgcatgtcct cgagcggatt
     2941 gtgctggcca ggcgcgccga gcaatcgctg tctgattatg tggaaagcgt cgcgagcccc
     3001 gatgccgtcc cgggcggcgg gagcgtcgcg gcgatcgccg gcgcgcttgg cgcggcgctg
     3061 gtcagcatgg tcgcgggcct caccgtcggt cgcgcccggt acgcatcggt agacgccgag
     3121 atgcccgaga tccagaccgg cgccatggac gtcgcgcgcg aattgcaggc actcgcgctg
     3181 cgcgatgcgg aagcatacgc acgcgtcacc gacgcccgca aattacccca ccgcaatcca
     3241 gacgaagctg ccgcacgaga cagtgcgatt cacaacgccc tactcggcgc catcgatgtc
     3301 ccgctggccg tggcgcggtg cgccgcgcgc gtcgtcatgc ttgtgagcac tgtcgccgag
     3361 cgcggaaatt cgaacgcaat cagcgacgca ggagtggcag cgttgctggc gagcgccgcg
     3421 tgcaccgggg cgtgttacaa cgttcgcgtg aacgcgagcg ggctgcgcga ctccgccgac
     3481 gctgatcgag ccgtgggtga ggcaattgca ctcgctgcgg aaaccgaagc tctggcagcg
     3541 tcagtggcaa ggagcgttag cggcgcgatc tgacgccgct gcgaggccaa cgcacgtacg
     3601 caggagcgta cgcggtcaat gcgtttaagc ggccagttga gtcagcacgc gcggtccctg
     3661 cgcggtgatt gccacggtgt gctcgaagtg cgctgcgcgc gacttgtcgg ctgtcacaac
     3721 ggtccactga tcggggagtt gccgggtctt gtggctgccg atcatcacca tgggctcgat
     3781 cgcgatggtc aggcccgcgg tcagcttgac gccacgcttg ggcttgccgt agttggggac
     3841 ctgcggatct tcatgaaacg tcgttccaat tccatgtccg accaggtcgc gtgtgacgtt
     3901 gaagcccgca cgctccacca cttcctgcac cgcggcgccg atgtcgccga cgtgattgtc
     3961 cggctgcgcc gcagcgattc cagctgcgag cgccttgcgc gtaacgtcga gcaaccgcaa
     4021 tgattccgca ccgacgtttc cgaccgcgat cgtcgtggct gcatccgtgt gatacccatc
     4081 gagcagtacg cccacatcga tcgacacgat gtcgccatca cggatgacgc gcttcgcact
     4141 cggaattccg tgcacgatct cgtcattgat cgacgcgcag acactcgcgg ggaatccgta
     4201 gagtcccttg aacgacggca gcgcaccttc gtgcgagcga atgaactcct cgaccatgtg
     4261 gtcgacgtcg agagtggaca taccggcatg cgtgtcagtt tcagccaggc gcaccgcggc
     4321 cgcgaggatc tgccccccgc gcgccattat ctcgatctct ctcgcagact tgagctgtat
     4381 cattgcttgc ttcctctcgc cgcgcgcggt caggacgcga gttgcacggt ttggagtgcc
     4441 tgcgccgcac gggctgtaac atcagtgacg tcaccgattg cgtcgatgcg ctggaccgga
     4501 acaccatgcg cgtcgtacca ctcgacgacc ggtgccgtga gctcttcata cacgttgagt
     4561 cggttctgaa tcgcctccgg ctcgtcgtcc ttgcggcgaa tcaggcggcc gccgtcgccg
     4621 cgcggacacg ccgtgcccgg ctccagtccc ttgaacggcg tctggcacac atcgcacgtg
     4681 gtacgcgcac tgagacgccg gatcaattca gcgtgattgg cctcgaagag caacaccgca
     4741 tcgaccttgc gtccgatgct ggcgagcgcc tccgcaaggc cctcggcctg cggcacggtg
     4801 cgcactgcgc cgtcgagaat tgcaccctgc gcggcctcgg gcgaagcgat cgcctcgcgg
     4861 agaattccga gaatcactga atcgggaacg agatctccgc gatccatgaa ttgcttggct
     4921 tcgagcccga gcggagttcc ctgacgtacg gcggcgcgaa acagatcgcc ggtcgcgatc
     4981 ttgggaatcg caaggcgagc tgcaagcagc tcgccctgag ttccctttcc cgcgcccggt
     5041 ggtccgagca gaacgattat cactattgca ccgcggcgtc agtagccggc gaacgaattc
     5101 tgcccgcgga accgcacccg tcccttcttc atgaatccgt cgtacttccg gagcagcatg
     5161 tgctgattga tctgcgccat cgtatcgagc gcgacgccga ccacgatcag cagcgacgta
     5221 ccgccaaaga cgaacgggac gttgatcatg gagccgatga acatcggcaa cagcgcaatg
     5281 aacgtaagga agatcgcgcc cgggaatgtg atgcgcgaga tgacggagtc cacgtattcc
     5341 gccgtcttgg cgcccggctt gactccagga atgaatccgc cctgcttctt cagattctcc
     5401 gctatgtcaa caggattgaa gatgatggcg gtgtagaagt acgtgaagaa gacgatcaga
     5461 atggcggaca gaacgaagta caaccacgta cccggctgca tccgctccga tacctgctgc
     5521 atgaacggat tgccgctgaa ctgggcgaac gcgcccggaa tcacgatcac cgactgcgcg
     5581 aagatgatcg gcatgacgcc ggccgtgttg attcgcagtg gaatgaagtt tcgcgatgcc
     5641 tctcgctggc gtccgcgcga catggtacgc tgtggaatct ggatcatgat gcgccgcgcg
     5701 gcgatcgtga tcgcaatcgt acccgcaacg acggcgacca tgacgaagcc gagtatgatc
     5761 agcgagaacg gtccgatcgc ctgcgtcgtc acgaacttga acgtgtcgag aattccaggc
     5821 cagaagcgct cgacgatcga gaagaagatg atgagcgacg cgccgttacc aaggccacgc
     5881 tcggtgatct gctcgcccag ccacatcacg aagatcgcgc cagtggtgag gaacagaacc
     5941 atctgcagct tgaacgcgaa ccctggcgtg atgacggcgt tctcgagcga cgacgtgaac
     6001 agcgcgaagc cccatccctg caccacggca agcgcgatgg tgatgtagcg tgtccactga
     6061 ttgatggttt ttcggccttc ctcgtccttc tgcatcttct cgacctgcgg caacactgca
     6121 ccggcgatct ggatgaagat ggacgcggag atgtacggca tgatgccgag cgcgaacacc
     6181 gttgcgcggg agagaccgcc tccgacgaac aggtcgtaca gcccgagcaa tcctccacca
     6241 cccttgttcg cgaagaaatc cgtgagcgcc accacgtcga ttcccggcgc cgtgatgtgc
     6301 gaaccgagcc ggtaaagaac gaggcagagg aaggtgaact tgatcttatc ccacagctcg
     6361 gtgttgcgcg tgatgtccgc gaccgccgat gcgggatttg tctgcgccat tagaagagtc
     6421 tcctcattgg gtggcagtgc cacccgaaac tgctgtagga cgattccgtc gcgctcgcgc
     6481 gctggaaccg cgaagcgccg gcgcggacgg cagaagccgc cgcactcgac gcattacaca
     6541 aaagttggta gcccataccg cggccccttc ggaaatttac gcgacggtac cgccggcggc
     6601 gacgatcttc tcgcgcgcgc cactgctgac cttgagcccg cggacggtca cagcctgcgt
     6661 gatctcaccg ttggccagta ccttcgccgg tcccttgccc ccgtggatca ttcctgcttc
     6721 cacgagcagc tcgttcgtta tctccctgcc ctcgaatctc gcgaggtcgc caagccgcac
     6781 gacctggctc tcgacccgga acggactcgt gaagccacgc ttcggcagcc ggcgcgtgag
     6841 cggcatctgg ccaccctcga actgtggctt gccgccgcct ggtccatggt gtcccgagcg
     6901 agccttgata cccttgtgtc ccttgcccga cgtcttaccc gtgccggagc ccgggccgcg
     6961 accgatgcgc ttgcgattgc gcgacgatcc cggtgcggac gacaggttgt ggagaccgat
     7021 tttcttagcc atttgttacg cctcttcctt ggccgcggcg atcgtcacga gatggcgcac
     7081 gcgcttgatc tgtccgcgca gtgccgccga atcctgatga atcaccacgt catgcgggtg
     7141 cttgagtccg agcgcctcga gcgtgcggcg catgcgccac gagtgcccga tcttgctgcg
     7201 aacctgtttg atctcaatcc tgccctttcc gggtgattga agcttgtccg tcgtctttgg
     7261 gcccctcgtc gggtgccaca cgaaagtcct cgccattacg cgaccacctt gaccttggca
     7321 cgcgagcggt agccgagcga gctctgctcg ataccgcgct cacgcgcgat ctgttctaca
     7381 gttgtcagtt tcgccagcgc gtcgagcgcg gcgagaacca tgttgtgcgg attggtcgag
     7441 ccgaggctct tggtaaggat gtcggtgatg ccaacgcatt ccataacggc gcgcaccgca
     7501 ccaccggcga tcacaccggc tcccggcgct gccggcttca tgagaacctt gcctgcaccg
     7561 tgctgtccaa cgattgagtg cggaatggtg ccgccagtca tcggaacggc gaccatgtgg
     7621 cggcgagcag cctcgacggc cttgcggacc gcctcggaaa cttcattcgc cttgccggtc
     7681 gagaatccaa ctcgtccctg gccatcacca actgcaacga gtgcgttgaa ggagaaacga
     7741 cgtccgccct tgacgacctt ggcaacgcga ttgatcgcga cgacgttctc gatgagatcg
     7801 ctaccgccct cgccgccctg accgccacgc ccaccatcac gtccgccacc ggggccgcgt
     7861 ccgccgcctg gaccgccgcg tccaccctga ccgccgccct gtccaccacg actctgaccg
     7921 ccgccctggc caccgcgacc accgccggcg ccaccacgtc cgccaccgcc ctgtccgccg
     7981 cggccacgct gctggccacc gccggagcgc gcactacgtc ccgggccgct attgccgcca
     8041 gtgttaccgc tgcttgcgcc gccgctcgcg gctggcgctc caccctgctt ctgttcgtca
     8101 gccattagaa ctccaacccg ccttcgcggg caccgtcggc caccgctttc acgcggccgt
     8161 gatacacata tccaccacgg tcgaagacga cgctggtcac gcccgcttcc ttggcgcgcg
     8221 ccgcgatctt cttgccgacc tcgaatgact tctcgacctt cttgccagtg attccgccgt
     8281 ccgtcaccgt catcagcgtg tgctgcgtat tgtcgtcgac gagttgtgca tagatgtgct
     8341 tctcggaacg gaatacaacg agacgcggac gctcggccgt gccattcact ttcttgcgaa
     8401 cgcgaaagtg acgacgggcg cggtactgct cgcgggtctg cggtttcttc atcgcttact
     8461 tgcccccggc cttaccggcc ttgcggcgaa cctgctcgcc ttgatacttg actcccttgc
     8521 ccttgtatgg ctcgggcgga cgcagactgc gcagctccgc cgcaacctgg cctacgattt
     8581 ccttgttggc gccttccacg acgatctgcg tcggttgcgg cgcgctcagc ttgattccct
     8641 tgggtgactt gtactccacc ggatgcgaga atccgagagc cagctgcaac ccgtacggcc
     8701 gaacctcggc cttgtaacca acgccgacca gctcgagcgt cttcgagaaa ccagtcgata
     8761 caccctcgac catgttcgcg acgagcgtgc ggctgagacc gtgcagcgcc ttgtgcttct
     8821 gctcgtccga cgggcgcgcg acgacgactt caccattctc catcgacacc ttcatgtccg
     8881 aatggagggt gcgctcgagc tcgcccttgg gacccttgac cttcacattg ttgccgtcga
     8941 ccgtcaccgt tacgttggcg gggaccggga ctggcttctt tccgatacgt gacattgtag
     9001 gctcgcttac cagaccagag cgacgagctc gccgccggtg cgatgctgcc gcgcctggcg
     9061 atcggacatc acgccctgtg acgtgctgag gatcgccatg ccaagtccgt tgcgaacgcg
     9121 cggaatctcg gtgacaccga cgtaacgccg gagaccggga gtcgagacgc gctgcagatc
     9181 acggatgacc ggctggcccg tgccagctgc gtacttgagg atgacacgca gaatctgccg
     9241 cccttcctcg gtctcgaggg tgcggtagtc ctggatgtag gaattttctt taaggatctg
     9301 cgcgatctgc gatttcacct ttgacgcggg catgtcgacg cggcgatgct tcgcccggca
     9361 tgcgttgcgg atccgcgtta gcatatccgc gatcggatct gtcatactca tcgttctgct
     9421 ctacctcgtc ccgtcgtatc cgttgcgcgg acgtgcgggg ctgcttgggt ggacactacg
     9481 aactactgac caacgtgtac gggcaggccc ctgtgcctgc ccttcttgac tctgcgcatt
     9541 ccttgagagg gcaggcaggg gcgcctgccc ctacgactgc cacgttacta ccaactggcc
     9601 ttgcgcacgc cggggatgaa ccccgccagt gccatgtcgc ggaacgcgat acgcgccagt
     9661 ccgaactgac gcaggtacgc gcgcgggcgt ccgctgaact cgcaacgatt gcgaatgcga
     9721 accaccgatg catcgcgcgg catcttgcgg atcgcggcgt atgcgtctgc gcgctgatcc
     9781 ggtgtcgatg tcgggttctt gattatcgcc ttgagctcgc gacgacgcgc cgcgtacttc
     9841 gcgactgttg cacgacgctg ctcgttcttc ttgatcttgg aagtcttcgc cattgtatgc
     9901 ttcggttaac cgtgtacgat gacgggcttc tcttcaccgc ggaacggcat gccgagctcg
     9961 cggagaagtg caagagcctg atcgtccttg ttcgtcgtcg tgacgaacgt gatgtccatc
    10021 ccgtggatct c
//
LOCUS       DATIMD010000567         3715 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_232047, whole genome shotgun sequence.
ACCESSION   DATIMD010000567 DATIMD010000000
VERSION     DATIMD010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3715
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232047"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(50..1393)
                     /locus_tag="VLI40_12725"
     CDS             complement(50..1393)
                     /locus_tag="VLI40_12725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HSU98089.1"
                     /translation="MPKPHRRKAEPSLFAPPSSAQPLAARMRPRTLDEFVGQEHLLAS
                     GKALRTAIERGTIGSMIFWGPPGTGKTTLGRLIAQYTDSEFVPFSAVTEGVPRVREIV
                     AEAEERLERGRATILFVDEIHRFNRAQQDAFLPHVEQGTITLIGATTENPSFEVNGAL
                     LSRMRVFVLEALTEGDLVTVIDRALHDAERGLGARNIRIADDARSVLARESDGDARRA
                     LTALEASATDVGDGGAITVDTVRDALQKRFALHDKSGEAHFNLLSALHKSLRGSDPDA
                     ALYWAARMIEGGEDPMTIFRRSIAMAAEDIGVADPQALQLAVAARAAYHVLGPPEGYL
                     ALAEMLVYLATAPKSNSAYRALGAAMDAARETPGEGPPMNIRNAPTKLMKELGYHAGY
                     KYAHDSEDAYIPQEYLPEKLRGSVFYQPGPFGFERDIAKRLAWWDELKKKAQEGE"
     gene            complement(1409..2128)
                     /locus_tag="VLI40_12730"
     CDS             complement(1409..2128)
                     /locus_tag="VLI40_12730"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HSU98090.1"
                     /translation="MSIAALIAALVAALANVVGAALVTGRRIWSPRDLDMMIAFSGGF
                     MISVAVVDMIPDAVTAHGATAGWMVLIGYLAVHLTQHTLVPHFHFGEETHHVTRSVGI
                     SALIGLMLHMLMDGVAIASGFAAGSNVGTLVVAAIILHKLPEGSTVSSLFLAAGFNRQ
                     NALGAAALLGLATVVGALLTATFAPLSEYGLALSGGVTVYVAASNLVPEFQHKHNWRF
                     PVAFFGGCVAFGAGHALLAIV"
     gene            complement(2125..2658)
                     /locus_tag="VLI40_12735"
     CDS             complement(2125..2658)
                     /locus_tag="VLI40_12735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98091.1"
                     /translation="MIFRSRPQQVTVWRRFRSGHDGFTFEESPEGYFEAHVAANAERA
                     VDLTHLLAEHLPPAVDVALTDRRSKTTWNGTDVALPDVRDAIARLKVPLATYAGVDVT
                     IFTPEDQLSLTAELDLYAFGRSDRWLYLLQALGLEQYGAVAEKGWRGQPWDRSPATVL
                     TTALVAAAERLSLTRVP"
     gene            complement(2655..>3715)
                     /locus_tag="VLI40_12740"
     CDS             complement(2655..>3715)
                     /locus_tag="VLI40_12740"
                     /inference="COORDINATES: protein motif:HMM:NF013871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98092.1"
                     /translation="AANVMHEVTTFRSDVETDGRHAVVRFGESLDEDLARRDFTINAI
                     AYSPSRDELRDPFGGQRDLAARVLRAVGVPKERMREDRLRALRAIRFASRFGFTMDPA
                     TWQAILVSAPHLGRLSPERVQQEIVKTMSQVALPSAAFRLWRDSGAFAELVPSLAGIT
                     DVELLALDHLRLPLLARRPQRLQLRLAGLFSAARPGTVLATLKALRFSNADSAWIGGL
                     VERWHEMGRGMKSELMRPEAPADSLLRAWAGRAGRTRLASLLRIADAHWWAERERGRP
                     APSRERVESVYRRAIRIAYRDPVEVSDLAVNGDDLQRIGITGKRLGETLRALLQYVLE
                     DPSRNTPDALLSRARSVA"
BASE COUNT          730 a         1202 c         1137 g          646 t
ORIGIN      
        1 ccgcagaaag aatagtgaaa gcgctggaag agaagcggcc gaccaagcac tactctccct
       61 cctgagcctt cttcttcagc tcgtcccacc aggcgaggcg tttggcgata tcccgctcga
      121 aaccaaacgg gccgggttga tagaaaacgg atccgcgtaa tttctcgggc aggtattcct
      181 gcgggatgta cgcatcctcg ctgtcgtgcg cgtacttgta gcctgcgtgg tagccgagct
      241 ccttcataag cttggtagga gcgttgcgga tgttcatcgg cggtccctcg cctggcgttt
      301 cgcgagcagc atccatcgct gcgccgagtg cgcggtaggc ggaatttgat ttgggcgcag
      361 tcgcgagata gaccagcatc tcggcgagcg ccagataccc ttccggtggc cccaggacgt
      421 gatatgcggc gcgcgcagcc accgcgagtt gcagagcctg cggatcagcg acgccgatgt
      481 cttctgcggc cattgcgatc gagcgccgga aaatcgtcat cgggtcttca ccaccctcga
      541 tcattctggc ggcccagtac agcgccgcgt ccggatcgct cccgcgaaga ctcttgtgaa
      601 gcgccgacag cagattgaag tgcgcctctc cgctcttgtc atgcagcgca aatcgtttct
      661 gcagcgcatc acgcaccgtg tcgaccgtaa tcgcgccgcc atctccgacg tcagtagccg
      721 atgcttcgag cgcggtaagc gcgcgacgcg cgtcgccgtc gctctcgcgc gcaagtacgg
      781 agcgcgcatc atcggcaatg cgtatgttgc gcgcgccgag cccacgctcc gcatcgtgaa
      841 gggcgcggtc gatgaccgtg acgagatcac cctcggtgag cgcctccagt acgaagacgc
      901 gcatccgcga cagcagcgca ccgttcactt cgaacgatgg attctcggtc gttgcgccga
      961 tcaaggttat ggtgccctgc tcgacgtgcg gtagaaacgc atcctgctgc gcgcggttga
     1021 agcgatggat ctcatcgacg aacagaatcg tcgcgcgtcc gcgctccagt cgctcctctg
     1081 cttccgcaac aatctcgcgc acgcgtggca caccttcggt gactgccgaa aacggaacga
     1141 actcggaatc ggtgtattga gcgatgagcc tgccgagcgt tgtcttaccc gttcccggcg
     1201 gcccccagaa gatcatcgag ccgatcgtgc cgcgctctat tgcggtgcgg agcgcctttc
     1261 ccgacgcaag caggtgctcc tgcccgacga attcgtcgag agtacgcggg cgcattcgcg
     1321 cggcgagcgg ttgcgcggat gatggtggcg cgaacaacga cggctcggct ttccggcgat
     1381 gaggcttggg cattttctcc aactcaggtc agacgatcgc cagcagagca tgtcccgcgc
     1441 cgaatgccac gcacccacca aagaacgcca ccggaaagcg ccagttgtgc ttgtgctgga
     1501 actcaggcac caggttcgat gcggcgacat acaccgtcac gccgccggac agcgcaagac
     1561 cgtactccga cagcggagcg aaggtcgcgg taagaagcgc tccgacgact gttgcaagac
     1621 cgagcagtgc cgccgccccg agcgcattct gtcggttgaa tccggcagcg agaaacaggc
     1681 tcgataccgt ggatccctca ggcagcttgt gcagaatgat cgcggcgaca accagcgttc
     1741 caacattcga tccagccgcg aacccgctcg caatcgcgac gccgtccatc aacatgtgca
     1801 gcatgagccc gatcagcgcc gatataccga ccgatcgcgt gacgtgatgt gtctcctcgc
     1861 caaagtggaa gtgcgggacg agtgtgtgct gggtgagatg aaccgccagg tagccgataa
     1921 gtaccatcca ccccgcggtt gcgccatgcg ccgtaacggc atcgggaatc atgtcgacga
     1981 ccgctacgga tatcatgaag ccgccagaga acgcgatcat catatccaga tcacgcgggc
     2041 tccagatacg ccgaccggtg acgagcgcag cgcccactac gttcgcgagc gcggcgacca
     2101 gcgccgcaat aagcgccgca atactcacgg tacgcgtgtc agcgacagcc gctcggccgc
     2161 ggcaacgaga gccgttgtga gcacggtcgc cggcgagcga tcccacggct ggccacgcca
     2221 ccccttctcg gctacggcgc cgtattgctc gagcccaagc gcctgcagca ggtaaagcca
     2281 gcggtcactg cgaccgaacg catacaggtc cagctcagca gtcagcgaaa gctggtcttc
     2341 aggtgtgaag atcgttacgt ccacaccggc atatgtcgca aggggaacct tgagtcgcgc
     2401 gatggcgtct cgcacatcag gcagagcgac gtcagtgccg ttccatgtgg tcttgctgcg
     2461 acgatcggtc aacgcgacat caacggctgg cgggagatgc tcggcaagca ggtgcgtcag
     2521 gtcgaccgcg cgctccgcgt tcgcggcgac gtgcgcctca aagtaccctt ccggagattc
     2581 ctcgaatgtg aatccgtcgt ggccggatcg gaatctgcgc cacacggtta cctgttgcgg
     2641 acgactccga aagatcatgc gacgctccgt gcgcggctca acaatgcgtc tggtgtgtta
     2701 cgacttggat cttcaaggac atattgcagc agtgcgcgca aggtttcgcc gagccgcttt
     2761 cccgtgatac cgatgcgctg aagatcgtcg ccgttcacgg cgagatccga aacctcgacc
     2821 ggatcgcgat acgcaatccg aattgcacgg cgatacacgg actcgacacg ctcgcgcgac
     2881 ggagccggcc ggccccgctc ccgctcggcc caccagtgtg cgtcggcaat acgcagcaag
     2941 gaagcgagcc gcgtgcggcc cgcacggccg gcccatgccc gcagcagcga gtcagccggt
     3001 gcctcagggc gcatcagctc gctcttcatt ccgcgtccca tctcgtgcca gcgctcaacc
     3061 aggcctccga tccacgcaga gtccgcattc gagaaccgta gcgccttgag cgtggcgagc
     3121 accgtgccag gccgcgccgc ggagaacaga ccggccaggc gaagctgcaa tcgctgcggt
     3181 cgcctggcaa gcagcgggag acgcaaatgg tcgagcgcca ggagctcgac gtcagtaatt
     3241 cccgccaggc tcggaacaag ctcggcgaat gctccgctat cgcgccacag acgaaatgca
     3301 gcgctgggca acgcaacctg tgacatcgtc ttgacgatct cctgctgcac gcgctcgggc
     3361 gacagtctgc cgaggtgcgg tgcactcacg agtattgcct gccacgttgc tggatccatc
     3421 gtgaagccga agcgcgaggc gaagcgaatc gcacgcagtg cgcgtagtct gtcctcacgc
     3481 atgcgctcct tgggaacacc gactgcacga agtacgcgtg ctgcaagatc gcgctgacca
     3541 ccgaagggat cgcgcagctc gtcacgggat ggcgagtacg cgatcgcgtt gatggtgaaa
     3601 tcgcggcgcg cgaggtcttc gtcgagcgat tctccaaatc tgacgaccgc gtgccttccg
     3661 tcagtctcga cgtcggaccg gaacgtggta acctcgtgca ttacatttgc cgcat
//
LOCUS       DATIMD010000568         5421 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1101179, whole genome shotgun sequence.
ACCESSION   DATIMD010000568 DATIMD010000000
VERSION     DATIMD010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5421
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1101179"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..326)
                     /locus_tag="VLI40_12745"
     CDS             complement(<1..326)
                     /locus_tag="VLI40_12745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSU98093.1"
                     /translation="MTTSTTPQAAAREPVQARTLAVRMHDISKSFGPVRANRDASLEV
                     ALGEIHALVGENGAGKSTLMRILGGLLTPDSGFLEVNGRDVTGWSTPDAIAAGVGVVH
                     QHFMLVP"
     gene            complement(323..1360)
                     /locus_tag="VLI40_12750"
     CDS             complement(323..1360)
                     /locus_tag="VLI40_12750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HSU98094.1"
                     /translation="MRKIIIAVVVLLAAHAALMLAGVGRGNATLARSGTTVGIVFDVG
                     GRGDKSFNDGAYAGADSARRMLGVTVRYIEPGDGSDRESGLRLLAAEKMNLVMGVGFI
                     FTDDLTNLAREYPDINFAGIDLSLAYDSTGKLIPPPPNLAALKFREEEGSFLVGSLAA
                     LVGHSKKVGFIGGMDIPLIHKFEAGYTAGVKYVCPDCTVIAQYAGVTPDAFKNPSRGK
                     ELALSQYQSGVNIIFHASGATGQGVFEAARAMHKLAIGVDADQYNDAPGYILTSMVKG
                     VNAATFDVIRRVHEGQFHGGVYSFGLKEGGVGYVYDEHNKGLIPDSVHARVEAIKADI
                     IAGKIKVPTTR"
     gene            complement(1433..4201)
                     /locus_tag="VLI40_12755"
     CDS             complement(1433..4201)
                     /locus_tag="VLI40_12755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98095.1"
                     /translation="MKPDPKSKPKSNLQSNRTLVRAMFAVAVILTVGAQHGCSDTPTA
                     PAAITPTRASDAINAPGDDGAPETIFLAPLGPKRHPRGILDTTVVPSVAICRLVGDAC
                     AAADTLAHFVYDSTADSTRRIELNERAYHFRWKVKDLPADPAVAYRVVVTLGDTIAGF
                     TDLKIVASDYLPPASDTARFAFITDRSWLNVRFQVFVPPVTLTVISEPGVHGDLTSQT
                     YSYRRGDRAPYNFYVDSGYRNMLVTLDQDPIPARGRILMDDSHVIIASADRDTGAAPG
                     DEWILRDARALLRASDKITSAQNLLTRLDEMQDTVNIIERLRRIEMTLLQRAADATAM
                     PALDAALAGHSFDAGSGAGSDDGAPGNGGDDGGGVVTASALLVPLGITARPQLRPSAS
                     IMSPASSGAEPVTIAYVNGILTTPLGALFAAHHIAVAAREAHWYVNAPFDVKLLYNRS
                     AMASESTTEDRCILELGIKGDWLGINSLPDEVARCINSTRPRALALLADYAEVGQQFS
                     SVLERSIVTRPADVDTIAAVTTRLRDAGRHVVFVMHSQGNLVVQQAATLLARQGKYSQ
                     ARDTTCIGGVALASPTSEAWPISARHLNGLVVDGDAILLLGHNKFPRVQTPLSDSAAS
                     AMSGSIRARIVSIATAARLRWGVRLHGIIESYLMQQPMRGRIEDAIVASYKGCALGRV
                     AIAPSGTHLRTGETGTLGAALLDMTGNALDGQRGLAWNAESQSDWQRAVLVSPEGVAT
                     ARYVGGTTVSAITRNVVGTAGVTVDPAVLQVSATETLSAQWVFVWPPTLGDQFPIPDF
                     AIPPTSWGGGSCAEYTVLKSNGREGTASKQCTAEYRVTIGEFAGAGKYVGTFFQRNAT
                     APLVSVSSTSASLHRSITGPTPNVDLLPGPVLIDRIGVTALDFAGHLLASGNACVHGC
                     AGWPNLKP"
     gene            4322..>5421
                     /locus_tag="VLI40_12760"
     CDS             4322..>5421
                     /locus_tag="VLI40_12760"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSU98096.1"
                     /translation="MPERIRTRFLVVGSGVAGLHTAWRAADSGEVVVLTKRSLFDSAT
                     AYAQGGIAAALGAGDSPELHRIDTLAAGAALCDAAAVEVLVEEGPDRVRELATAGAQF
                     DRDMAGNLQLGREAAHSRRRIVHSHGDQTGAEVARTLIERVRATPAIHVSEKTRVLDL
                     IVENNTCVGVRATVAGKATEFIADATVLATGGCGQVYRYTTNPAVATGDGFAIAHRAG
                     VKLADMEFVQFHPTALDTAETPLALVSEAVRGEGAILVNDRGDRFMLKEHKLAELAPR
                     DIVARAILREQRAGRKVFLDATRFERPFEEHFPGIFALCIARGINPNTDLIPVTPAAH
                     YMMGGIVTDLAGRASIPRLYACGEVARTGVHGA"
BASE COUNT          948 a         1696 c         1756 g         1021 t
ORIGIN      
        1 gggacgagca tgaagtgctg gtgcaccacg ccgactccag ctgcgattgc gtccggcgtg
       61 ctccaccccg tgacatcgcg gccgttcacc tcgagaaatc cggagtccgg cgtcagtaat
      121 ccgcccagga tgcgcatgag cgtggacttg ccagcgccgt tctcgcccac gagcgcgtgg
      181 atctcgccga gtgcgacttc gagagacgca tcgcgattcg cccgcactgg cccgaacgat
      241 ttcgagatgt cgtgcatgcg caccgcaagc gtgcgcgcct gcacgggctc tcgtgcggcc
      301 gcttgcgggg tcgtcgaggt cgtcatcgag ttgtgggtac cttgatcttt ccggcgatga
      361 tatctgcctt gattgcttcg acgcgcgcgt gcacggagtc gggaatcaat cccttgttgt
      421 gctcatcata cacgtagccc acaccgccct ccttgaggcc gaacgagtac actccgccat
      481 ggaactggcc ttcgtgcacg cgtcggatca cgtcgaatgt cgccgcgttc actcccttga
      541 ccatcgacgt caggatgtag cccggtgcgt cattatactg atccgcatcc acgcctatcg
      601 cgagcttgtg catcgcgcgc gctgcctcga atacgccctg gcccgtcgca ccgctggcat
      661 gaaagattat gttgacgccg gactgatact ggctcagcgc gagctccttg ccacgactcg
      721 gattcttgaa cgcgtcgggc gttactccgg cgtattgtgc gataacggtg cagtccggac
      781 agacgtactt gacgcccgcg gtgtaacccg cctcgaactt gtggataagc ggtatgtcca
      841 tgccgccgat gaagccgact ttctttgagt gtccaaccag cgccgcaagt gaacctacga
      901 gaaaggaacc ttcttcctcg cgaaacttga gcgccgcaag attgggtggc ggcgggatca
      961 gcttgccggt ggaatcatac gcgagcgaga gatcgatgcc ggcgaagttg atgtcgggat
     1021 attcgcgcgc gaggttggtg aggtcgtccg taaagatgaa gcccacaccc atcaccaggt
     1081 tcatcttttc ggcggcgagc aaccgcagtc cggattcacg atccgaccca tcacccggct
     1141 ctatgtagcg cactgtgacg cccagcatgc gacgcgcact gtccgccccc gcatatgcgc
     1201 cgtcgttgaa cgacttgtcg ccacgaccgc cgacgtcgaa gacgattcca acggtggtcc
     1261 ccgagcgggc gagggtcgcg ttaccgcgac ccacaccggc cagcatgaga gcagcatggg
     1321 ctgcgagtag taccaccacg gcgattatga tcttgcgcac gggtggtaaa tatagatgcc
     1381 cgctcgcacg ggtggctccc cggtttcccg gggagcgctt cattcgtgtc tgctacggct
     1441 tgagattggg ccagcctgcg catccgtgca cgcacgcatt gccgctcgcg agcagatggc
     1501 cggcgaagtc cagcgcggtg acgcctattc gatcgatcag tacgggcccg ggtagcagat
     1561 ccacgttcgg agtagggccg gtgatcgacc ggtggagcga tgcgctcgtg ctcgatacgc
     1621 tgaccagcgg tgcagtcgcg ttcctctgga agaacgtccc aacgtatttc cccgcccccg
     1681 cgaactcgcc gatcgtcaca cgatactccg ccgtacactg cttgctggca gtgccctctc
     1741 ggccgttgct cttcaggacc gtgtactccg cgcagctccc gccgccccag ctcgttggcg
     1801 gaatcgcaaa gtctggaatc ggaaactggt cgccgagtgt tggcggccac acgaacaccc
     1861 attgcgctga cagagtttcg gtcgcggaaa cctgaagcac ggcaggatcg acggtcacgc
     1921 cggcagtacc gacgacgttg cgcgttatcg cgctcacggt tgtgccaccg acgtatctgg
     1981 cggtcgcaac accctcgggc gatacgagca cggcacgctg ccagtcggat tgcgactcag
     2041 cattccatgc cagaccgcgc tgtccatcga gtgcattgcc ggtcatgtcg agcagtgcgg
     2101 cgccgagtgt tccagtctcg ccagtgcgaa ggtgcgtccc gctcggcgcg attgcaaccc
     2161 tgcccagcgc acatcccttg taggacgcga cgattgcatc ttctatgcgg ccgcgcatcg
     2221 gttgctgcat gaggtagctc tcgataatgc cgtgcagccg cacgccccat cgcagtcgag
     2281 cggcagtcgc gatcgaaacg atccgtgcgc gaatggatcc gctcatggca ctcgccgccg
     2341 agtccgacaa tggagtctgc acgcgcggga acttgttgtg gccgagcagg aggatggcgt
     2401 cgccgtcgac aacgagtcca ttcagatgcc gcgcggagat tggccacgcc tcgctggtgg
     2461 gcgatgcgag cgcaacgccg ccgatgcacg tcgtgtcgcg cgcctgcgaa tactttccct
     2521 gacgcgcgag cagcgtcgcc gcctgttgca cgacgaggtt gccctgtgaa tgcatgacaa
     2581 atacgacgtg tcgccccgca tcacgcagcc gggtcgtgac tgccgcaatg gtgtccacgt
     2641 ccgcgggccg cgtgacgatc gagcgctcca ggacgctgct gaactgctgg cccacctccg
     2701 cgtagtccgc cagcagcgcg agagctcgtg gccgcgtgct gttgatacat ctggcaactt
     2761 cgtccggaag tgagttgatg ccgagccagt cgcccttgat acccagctcg agaatgcagc
     2821 gatcttccgt ggtgctctcg cttgccatgg cgctgcgatt atacagcagc ttcacgtcga
     2881 acggcgcgtt cacgtaccag tgtgcttccc gtgctgccac ggcgatgtgg tgcgcggcga
     2941 agagtgcgcc gagcggcgtg gtgagaatgc cgttgacata cgcgatcgta acaggttcgg
     3001 caccggagct tgccggcgac atgatactcg cggacgggcg cagctgcggg cgtgccgtaa
     3061 tgccgagtgg cacgagcagc gccgatgcgg tgacaactcc gccgccatcg tcacctccgt
     3121 ttcccggagc gccatcgtcc gatcccgcac cggagcccgc gtcgaaggag tggccggcga
     3181 gcgcggcatc gagcgccggc atcgcagtcg cgtcggcggc gcgctgaagc agcgtcatct
     3241 cgatgcgccg caatcgctcg atgatgttga ccgtgtcctg catctcgtcg agcctggtga
     3301 gcaggttctg cgccgatgtg atcttgtcgc tcgctctcag cagggcgcgc gcgtcgcgca
     3361 gaatccattc gtctccgggt gccgcgcccg tgtcccgatc tgccgacgct atgatgacgt
     3421 gcgaatcgtc catcaggatg cggccgcgtg cgggaatggg atcctggtcc agcgtgacga
     3481 gcatgttccg gtatcccgag tcgacgtaga aattgtacgg agcccggtcg ccgcgccggt
     3541 agctgtatgt ctggctcgtg agatctccgt gcacgcccgg ctcggatatc accgtgagtg
     3601 ttaccggcgg gacaaatacc tggaagcgaa cattgagcca gctgcgatcc gtgatgaagg
     3661 cgaaacgcgc ggtatcgctc gccggtggca gataatccga cgcgacgatc ttgagatccg
     3721 tgaacccagc gatggtgtcg cccagcgtta ccactacgcg atatgcgaca gctggatcag
     3781 cgggaagatc cttcactttc catctgaagt gatatgcgcg ctcgttcagc tctatgcgac
     3841 gcgtcgagtc ggcggtcgaa tcataaacga agtgcgcgag tgtgtcggcg gcggcacacg
     3901 catcgccaac gagccggcag atagcgaccg acggtacaac cgtcgtgtcg agtatgccgc
     3961 gcgggtgccg ctttggcccc agtggcgcga gaaagatcgt ctcaggcgct ccgtcgtcgc
     4021 caggcgcatt gatggcgtcc gacgcccggg tgggcgttat tgcagccggc gcggttggcg
     4081 tgtcactgca tccgtgttga gcgccgacgg tcagaatgac tgcgacggcg aacatcgcgc
     4141 ggacgagggt gcggttggat tgcaaattcg actttggctt ggacttcgga tccggcttca
     4201 tggcttgctc caatgggatt gggccgccat gatagagtgg aattcggcac gcgggccaaa
     4261 gcaccggcgc acggacgtca tcggaactgc gccggctggc gcgtgtggct atctttcgcg
     4321 catgccagag cgcattcgca cacgtttcct cgtggtcggg agcggagtcg caggcctgca
     4381 caccgcgtgg cgcgcggccg attcgggtga ggtcgtcgtt ctcaccaagc gctccctctt
     4441 cgatagcgca actgcgtacg cgcagggtgg catcgccgcc gcgttgggcg ctggtgactc
     4501 gccggagctg caccggatcg acacacttgc cgcaggcgct gcgctgtgtg acgctgcggc
     4561 cgtggaagtg ctggtcgagg aaggccccga tcgggtccgc gagctcgcca ccgctggagc
     4621 gcaattcgat cgcgatatgg cggggaatct tcagctggga cgcgaagccg cgcattcgcg
     4681 cagacgcata gtccattcac atggcgacca gacgggcgcc gaggtggcgc ggacgctgat
     4741 cgagcgcgtg cgagcgactc cagcgattca tgtgtctgaa aaaacgcgtg ttctggatct
     4801 gatcgtcgag aacaacacgt gtgtcggcgt tcgcgcgaca gtggcgggca aggcgaccga
     4861 gttcattgcc gacgccacag tcctggcgac cggcggctgc gggcaggtgt atcgctacac
     4921 gaccaacccg gcagtggcta ccggcgatgg cttcgcgatc gcgcatcggg cgggcgtcaa
     4981 gctggccgat atggagttcg tgcagttcca tccgacggca ctggacaccg cggagacccc
     5041 gctcgcgctc gtttcagagg cagttcgcgg cgaaggggca atcctcgtga acgatcgcgg
     5101 cgaccgtttc atgctcaagg aacacaagct tgcggagctc gcgcccaggg acatcgtggc
     5161 ccgcgcgatc ttaagggagc agcgtgccgg ccgtaaggta tttctcgacg cgacgcgatt
     5221 cgaacggccg ttcgaagagc attttccggg cattttcgcc ctgtgcattg cgcggggcat
     5281 caacccgaat accgatctga tcccggtgac gccggctgcg cattacatga tgggcgggat
     5341 cgtcaccgat ctggcggggc gggcgagcat accgcgcctg tacgcgtgtg gagaagtggc
     5401 gcgcacgggg gtgcatggcg c
//
LOCUS       DATIMD010000569         4478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5148967, whole genome shotgun sequence.
ACCESSION   DATIMD010000569 DATIMD010000000
VERSION     DATIMD010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4478
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5148967"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2795
                     /locus_tag="VLI40_12765"
     CDS             <1..2795
                     /locus_tag="VLI40_12765"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSU98097.1"
                     /translation="SPIMSIAVQSSTRPIRELTDLATESITQRLEAVPGVAAVNLSGG
                     EQRTIRIQLDPNAMRSYGLTPPDVMTALQRENQEVPAGRIDKGSVETLVRIRGRIIDP
                     KAFGGIVVAVRGGSPVHLRDLGTVIDGSADKRTAAMLNRAPTVALDIQKIAGSNTVEV
                     ADSVHAAIADLENVVPGDVRLTVIRDDSQRIRESLSDVQLNIILGAVLTIAIVYLFLN
                     SWRSTIITGLTLPVSVISAFFVMWLFNFTVNTMTLLALSLAIGLLIDDAIVVRENIVR
                     HVQMGKDHIKASMEGTDEIGMAVISTTLAVMAVFVPVAFMGGIIGKIFFQFGVTVAFA
                     VLVSLFVSFTLDPMLSSVWPDPELEHELGHAGEVDYKKVRNPVRRAALRFNAWFEKAA
                     DHYPAWLEWALKHRGAVIFGALASVALAVLITGKLGFTWMPDTNSDEFSVNVRTAPGS
                     TLEYTTDKSDQVAEFLRKQPETEFTYTTIGSGFRGTPNSGSIYVRLKPAAHRSASVQD
                     IQNRLRGELKNIPGITPTIQNASSIFGGRGQPISVNVQGPEESRLKIAANQVLEAIKD
                     VPGIAEANSSDDGNIPQLDVDVDRERAWASGVGIASVASTLQPLFTGQRATQWEDANG
                     YSHDVIVVYPDSLRQSVSNVATIPVPSSNIDPTTGRPVIIPLSQVADITLGTGPQQIS
                     RRNLERQIGISAGVLPGYNVGDVAAQVQTAIDSLGLPPGYHTVFGGDVKNLNETKGYV
                     GGALLLAVVFIYLIIASLFGSFLQPLSILMSLPLSFIGVALALLVTKGNLNIMSMIGI
                     IMLMGLVVKNGILLVDFTILNRGEGASRHDALLNAGRTRLRPIIMTSMAMIFGMLPLA
                     LAIGPGADQRAPLARAVIGGLVTSTLLTLFVVPVVYTLIEDATEFTMHTAPGRIRGFA
                     GRFSRSRESRKTVSAP"
     gene            complement(2704..>4478)
                     /locus_tag="VLI40_12770"
     CDS             complement(2704..>4478)
                     /locus_tag="VLI40_12770"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HSU98098.1"
                     /translation="ATVWLARARSQPEIASWLYLRAAAATADSSARRELYSRVQLPLA
                     RERIAWVEAAALEHFGDTLSALRAYRALPAPVTVFRLRAATGPAVSDSVRRELVAFIT
                     GSNGDTVREAISLFDKLFNDAKPDEQLAIARAAARVGLWARARAGFEAGNAAALSQTD
                     RFSFGTALSRTNADTRAAEVYATVNSPAALANAAQYQRARSLLAAGDGDGARSALRAL
                     SGGSDTSAAAALALTADLQTDDGDDAGSRRTLLTLIKRFPSTRFAAPAEFDAAMVALI
                     LGQTSAAAKEFAALSRSSSSSDALGGGYWLGRARETAGDTGAARDAWRAVIKRDSTSY
                     YATLAAARLGVQSMHSSRTVAGFPRVAAVDSATLRVSLLRRFGMSSEAQMENDRLYRD
                     ARTDSTRLLATAAAFSATDQAARAIALGRDALSRVGSTPDVWRLIYPVAARDTIVAES
                     RNAGLDPALVAGLIRQESNFNPGARSPAGARGLMQVMPAVGKSIAPSAGITSWDPALL
                     YDPGINIEIGIRHLAPLLKRQPNVARSLAAYNAGGSRVARWATKRGADDPEIFTERIP
                     FSETRDYVKSVLRNREFYQVLYAW"
BASE COUNT          829 a         1414 c         1407 g          828 t
ORIGIN      
        1 actcgccgat catgtcgatc gcggtccaga gctcgacgcg gccgattcgc gagctcaccg
       61 acctcgcgac ggaatcgatc acgcagcgcc tggaagcagt acccggagtc gccgcggtaa
      121 atctctctgg gggcgagcag cgaacgattc gcatccagct cgatcccaac gcgatgcgct
      181 cctacggcct cacgccaccg gacgtgatga cagcgctcca gcgcgaaaat caggaagtgc
      241 cggctggtcg aatcgacaag ggttccgtcg aaacgctggt gcgcattcgt ggccgcataa
      301 tcgatcccaa ggcctttggt ggaattgtcg tcgcggtgcg cggcggatct ccggttcatc
      361 tacgcgacct cggcaccgtc atcgacggat cggcggacaa gcgaacggct gcgatgctca
      421 accgcgcgcc gaccgtcgca ctcgacattc agaagatcgc cggctccaat acggttgaag
      481 tcgccgattc cgtacacgcc gccatagccg atctcgaaaa cgtggtgcct ggcgatgtgc
      541 ggctcacagt gatccgcgac gactcgcagc ggatccgcga gtcgctgtcg gacgtgcagc
      601 tcaacatcat acttggtgct gtgctcacga tcgcgatcgt gtatctcttc ctcaactcgt
      661 ggcgctcgac gatcataact gggctcacgc taccggtgag cgtgatctcc gcgttcttcg
      721 tgatgtggct gttcaacttc acggtgaata cgatgacgct gctcgcgttg tcgctcgcaa
      781 tcgggttgct gatagacgac gcgatagtcg tgcgcgaaaa catcgtgcga catgtgcaga
      841 tgggaaagga tcacatcaag gcatcgatgg aaggtacgga cgagatcgga atggctgtga
      901 tctcgaccac actcgccgtc atggcggtgt tcgtgccggt ggcgttcatg ggcggaatca
      961 taggaaagat cttcttccag ttcggagtca ccgtcgcatt cgcagtgctg gtgtcgctgt
     1021 tcgtgtcgtt cacactcgat ccgatgctgt cgagcgtgtg gcccgacccg gagctggagc
     1081 acgagctggg acatgccggg gaagtcgatt acaagaaggt ccggaacccc gtccgtcgtg
     1141 ccgcgctgcg cttcaacgca tggttcgaga aagctgcgga ccactatccc gcatggctgg
     1201 aatgggcgct caagcatcgc ggcgccgtga tattcggcgc tctcgcgtcg gttgcgcttg
     1261 ccgtgctgat caccggcaag ctcggcttca cgtggatgcc cgacacgaac tcggacgaat
     1321 tcagtgtcaa cgtgcgaact gcgccaggct cgacgctcga gtacacgacc gacaagtccg
     1381 atcaggtggc tgagttcctg agaaagcagc ccgaaacgga attcacgtat accaccatcg
     1441 gctccgggtt ccgcggcacg cccaactccg gctcgatcta cgtccgtctc aagccggcgg
     1501 cacatcgttc cgcttcggtg caggacatcc agaaccggct tcgcggcgag ttgaagaaca
     1561 ttcccggaat cacaccgacc attcagaacg cgtcgtcgat attcggcgga cgcggccagc
     1621 caatctcggt gaacgtacag gggccggagg agtcgcgtct caagatcgcg gccaaccagg
     1681 tgctcgaggc gatcaaggac gtacccggta tcgccgaggc aaactcgagc gatgatggca
     1741 acatcccgca gctcgacgtc gacgtggatc gcgagcgcgc gtgggcgtcg ggtgtaggga
     1801 tcgcgtccgt tgcatccacg ctgcagccgc tcttcacggg acagcgtgcg acgcaatggg
     1861 aggatgccaa cggttattcg catgacgtca tcgttgtcta tcccgactcg ctgcggcaat
     1921 cggtcagcaa cgttgcgacg atcccggtgc cgagcagcaa catcgatccc acaaccggac
     1981 ggccggtaat cattccgctg tcgcaggtag ctgacatcac tctcggcacg ggcccgcagc
     2041 agatcagccg gcgcaatctc gaacggcaga tcggcatttc tgcaggcgtc ctgcccggtt
     2101 acaacgtcgg cgatgtcgcc gcgcaggtac agaccgcgat cgattcactc ggccttccgc
     2161 ccggatatca caccgtgttc ggcggcgacg tcaagaacct gaacgagacc aagggatacg
     2221 tcggcggcgc actgctgctc gccgtcgtgt tcatatatct catcatcgcg tcgctgttcg
     2281 gctcgttcct gcaaccactg tcaattctga tgtcgctgcc tctcagcttc atcggcgtgg
     2341 cgctcgcgct gctagtgacc aagggaaatc tcaacatcat gagcatgatc gggatcatca
     2401 tgctcatggg actcgtcgtc aagaatggaa tcctgctcgt cgacttcacg atcctgaatc
     2461 gtggagaggg tgcaagcaga cacgacgcgc tcctcaacgc agggcgaacg cggttgcgcc
     2521 cgatcatcat gacctcgatg gcgatgatct tcggaatgtt gccgctcgcg ctcgcgatcg
     2581 ggcctggcgc cgaccagcgg gctccgctcg ctcgtgcggt gatcggcggg ctcgttacgt
     2641 cgacattact tacgctgttc gtggttccgg tcgtctacac gctgatcgag gatgcgacgg
     2701 aattcaccat gcatacagca cctggtagaa ttcgcggttt cgcaggacgc ttttcacgta
     2761 gtcgcgagtc tcggaaaacg gtatccgctc cgtgaagatt tcgggatcgt cggcgccacg
     2821 tttcgtggcc caccgtgcga cgcgtgagcc gccggcgttg taggcggcaa gcgatctggc
     2881 tacgttcggc tgccgcttga gcagcggtgc gagatgccgg atcccgatct cgatgttgat
     2941 cccgggatcg tacagaagtg ccggatccca cgatgtgatg ccggcggatg gggcgatcga
     3001 cttccccacc gctggcatca cctgcatcag gccccgtgca cctgccggcg atctcgcgcc
     3061 gggattgaag ttggactcct gacggataag gcccgccacg agtgccggat cgagccccgc
     3121 gttgcgcgac tccgccacga tcgtatcgcg cgcagcgacc ggatatatca agcgccagac
     3181 gtctggtgtc gatcctactc tcgagagtgc gtcgcggcca agtgcaatcg cacgcgcggc
     3241 ctgatcggtt gccgagaacg ccgcagcagt cgcaagcagc cgcgtgctgt cggtcctggc
     3301 gtcgcgatac agccgatcgt tctccatctg tgcttcggac gacattccga atcggcgcag
     3361 caacgagacg cggagcgtcg cactgtccac cgccgctacg cgcgggaatc cagctacggt
     3421 ccgcgacgag tgcatgctct gcaccccgag acgcgccgct gccagcgtcg cataatacga
     3481 agttgaatcg cgtttgatga cggcgcgcca ggcatcgcgg gccgcgccag tgtcgcccgc
     3541 cgtctcgcgc gcacggccga gccagtagcc gccgccgagc gcgtcgctcg atgacgatga
     3601 tctggaaaga gctgcgaact ccttcgcggc tgccgacgtc tgcccgagga tgagagctac
     3661 cattgcagcg tcgaattccg cgggcgcggc gaagcgcgtt gacggaaatc gcttgatcag
     3721 cgtgagcagc gtgcggcggc tgcctgcgtc gtcgccatca tccgtctgga gatcggcggt
     3781 gagtgcgagc gccgcggcag cgctcgtatc cgacccgccg gacagagcgc ggagcgcgga
     3841 gcgtgcgccg tcgccgtcgc ctgcagcgag gagagagcgt gcgcgctgat attgtgcagc
     3901 gtttgcaagc gcggcgggcg aattcacggt tgcatacact tcagcggcgc gcgtgtcggc
     3961 gttcgttctc gatagcgccg tgccgaacga gaaccggtca gtctggctga gcgcggcggc
     4021 gttgcccgcc tcgaagcccg cacgtgcacg cgcccaaaga ccgacgcgcg ccgcggcgcg
     4081 cgcaattgca agttgctcgt ccggtttcgc atcgttgaac aacttgtcga ataacgagat
     4141 cgcctcgcgc accgtatcgc cgttcgaccc ggtgatgaac gctacaagct cgcgacgaac
     4201 tgaatcgctg accgctggtc cagtcgccgc gcgaagcctg aagaccgtga cgggcgccgg
     4261 cagcgccctg taggccctga gggcgctcag tgtatcgcca aagtgctcga gcgcggcggc
     4321 ctcgacccac gcaatccgct cacgcgccag cggaagttgt acgcgcgagt agagttctct
     4381 ccgagcggat gaatctgccg tcgcggccgc ggcacgcagg tacaaccagc tcgcgatctc
     4441 gggctgactt cgtgcacggg cgagccagac ggtggcgg
//
LOCUS       DATIMD010000570         4187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5149147, whole genome shotgun sequence.
ACCESSION   DATIMD010000570 DATIMD010000000
VERSION     DATIMD010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4187
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5149147"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..454)
                     /locus_tag="VLI40_12775"
     CDS             complement(98..454)
                     /locus_tag="VLI40_12775"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSU98099.1"
                     /translation="MTKSGSDLVAEAKARVKEIDAANAIMEKQKPDTVFLDVREPNEW
                     NLGHVPGAIHIPRGQLEGKVEGVLDRDKNIVVYCAGGSRSALAADTLQQMGYQHVASL
                     KGGFRGWAEGGGEIED"
     gene            complement(451..1377)
                     /locus_tag="VLI40_12780"
     CDS             complement(451..1377)
                     /locus_tag="VLI40_12780"
                     /inference="COORDINATES: protein motif:HMM:NF036772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HSU98100.1"
                     /translation="MPIRGFSHVQTTGAGARIALVAPSGPLKDRGDVETALATARSFG
                     WETTVGEHVLARYSYFAAPDADRIADFNAALRDDSVDAIWCLRGGYGVMRILDQLDYD
                     AARRHPKPVMGYSDISGLHAAIGRACEIITYHAPNARTQLTPFARTSFERALVQGVDP
                     CGAATGARVVRAGRARGRLAGGNLSLISSLAGTPYFPDLDDAILVIEDTNEGLYRIDR
                     MLTQLSLAGELSRLAGIAFGYCTSCDADESPGDTRQSRTLDDVLAEFAGTLNIPCIAG
                     IPMGHVDDQWTIPLGAIATLDTDSLTLSVEQS"
     gene            complement(1806..2114)
                     /locus_tag="VLI40_12785"
     CDS             complement(1806..2114)
                     /locus_tag="VLI40_12785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98101.1"
                     /translation="MGAPLVNIGSGDQVRPLPEPPRPRRDASFPESRELEEFLSLDER
                     VLELPLDAPLDAPLEVPLEAPLARRAFSSFELWLPDLRDASLYPESAPYPPSSRELLW
                     "
     gene            2218..3393
                     /locus_tag="VLI40_12790"
     CDS             2218..3393
                     /locus_tag="VLI40_12790"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSU98102.1"
                     /translation="MSDATAAAIVATIPWIVTPIVASLRMARSTSLDAESPQPPADAP
                     RVTVIVPARNESRNIAACLQSILASSYPQLEVIAVNDHSEDDTAAIARSIGSSDPRLI
                     VLDNPDLPADWFGKQWACQTGADAASGEILVFMDADARAAPDLIVRSVNGMLRTQADF
                     YSVLGRQEMVTFWERLLQMQVFTVLITRFGGTEIVNRSTKASAKIANGQYLMVRRATY
                     DEFGGHGLVRGYVAEDLMLAQRYFELGKKTVLVKGMDQLSTRMYTSLAELMGGWRKNL
                     FAGGRHSMPFGGRATWLAPVLLPLPFLMQLAPPVLLVVAIAFRIPALELWGAITTGVI
                     LLTWLAYYRFARVPMLYALLFPLGAAVTLYITLSAVLRGSRVEWKGREYESVHPASS"
     gene            complement(3404..3784)
                     /locus_tag="VLI40_12795"
     CDS             complement(3404..3784)
                     /locus_tag="VLI40_12795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98103.1"
                     /translation="MQKKRAEAIKQEWGDRPCDHPALAKEYDLGKRTGSYVCTQCGTT
                     FTFREKAEKFGVRSPDPEPSHSGGFMKKKSTRDIPDFSRKPSRSKSGATPSTLPSSKL
                     RTVNASAPRPKPQATSAKGGQRGK"
     gene            complement(3810..>4187)
                     /locus_tag="VLI40_12800"
     CDS             complement(3810..>4187)
                     /locus_tag="VLI40_12800"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSU98104.1"
                     /translation="EEDREPVAAGGWSARRTLYGGDQMKDMEDPRLDPTVDAARIRAF
                     FVHPRWARRGLARRLYAECAQAAWRAGFRSFELIATSPGEPLYAALGFSVLERDAVHV
                     AGVAIPFARMRRQIPRPDSVGGG"
BASE COUNT          837 a         1300 c         1228 g          822 t
ORIGIN      
        1 aagcgggaat ccatgttatc gatcttcaag tgcggtggta gcacgaacct ggtcggcagc
       61 agatggattc ctgctttcgc gggaatgaca atcagggtca gtcctctatc tcgccgccgc
      121 cctcggccca tccgcgaaat ccgcccttga gcgacgcgac gtgctgataa cccatctgct
      181 gcagcgtatc ggccgcaagt gccgagcgcg atccaccggc gcagtacacc acgatgttct
      241 tgtcgcgatc cagaacgccc tcgaccttcc cctcgagctg accgcgcgga atgtgaatcg
      301 cgcccggtac gtgcccaaga ttccattcgt ttggctcgcg cacatccaga aagaccgtat
      361 ctggtttctg cttctccatg atcgcattag ccgcgtcgat ttcctttact cgcgcctttg
      421 cttcggcgac gagatcgctt ccgcttttcg tcatgattgt tccacgctga gggttagtga
      481 atccgtgtcg agtgttgcga ttgcgccgag tggaatcgtc cactgatcat cgacatgtcc
      541 catcggtatt ccagcgatgc acggaatgtt caatgtaccc gcaaattccg cgagcacgtc
      601 atccagagta cgggactgac gcgtgtcacc gggcgattca tccgcgtcgc aggatgtgca
      661 gtatccgaat gcgattccag cgagccgcga cagttcgccc gcgagcgaaa gctgagtgag
      721 catgcggtcg atccggtaca gcccttcgtt ggtgtcttcg attacgagaa tcgcgtcgtc
      781 cagatccggg aagtacggcg taccggcgag agaagatatc agagaaagat ttccccctgc
      841 aagtcttccg cgtgcgcgac cggcgcgaac cacacgtgca ccggtcgcgg cgccgcacgg
      901 atcgacaccc tgaaccagtg cacgctcgaa cgacgtacgt gcaaacggtg tgagctgcgt
      961 acgcgcgttt ggtgcgtgat aggtaatgat ctcgcacgcg cgaccgattg ccgcgtgcag
     1021 tccggagata tcggaatatc ccatgaccgg cttgggatgt ctgcgcgccg cgtcatagtc
     1081 gagctgatcc aggatgcgca tcacaccgta accgccgcgc agacaccata tcgcatcgac
     1141 agaatcatcg cgcaacgcag cgttgaaatc cgcgatacga tcggcatccg gtgcggcaaa
     1201 gtagctgtag cgtgcgagaa cgtgctcacc gactgttgtt tcccagccga acgagcgagc
     1261 cgtcgcgagc gctgtctcga catcgccacg atccttcaac ggaccggatg gtgcgacaag
     1321 cgctattctg gcgcctgctc ctgtcgtctg aacgtgtgaa aagccgcgaa ttggcatgtg
     1381 aatatatgaa tgcgatattg cgaacacccc gtgccacaac actaatctgg cacatgcgtt
     1441 gccggctttc acgtaaacgg gaaaacaact tcccggcatc acggaggaat ttttatggcc
     1501 ggcagagaca ggcatgacaa tgaccagaac aaaagttctc gcaaatcaaa gccaaaaacc
     1561 agctcgaacg gcggtatgaa cgcctcaacg ggttcgacgg aggacagaga gccaagcatg
     1621 ggcggctcac agggaaccat ggacgaggct cgcgaccggg ctcgcgacga ggcgaggcga
     1681 aacgcatcct cgggaagctc tcagagcaac tctcagaaca gctcgcaaaa cagttctcaa
     1741 cgcagctctc cgggcagctc gcaaaacagt tcgcagggca gcccccagaa cagccctcag
     1801 aacagctacc agagcagctc ccgtgaggaa ggcggatatg gcgccgattc cgggtatagc
     1861 gatgcatcgc gaaggtccgg tagccagagc tcgaacgacg agaacgcgcg acgggcgagc
     1921 ggtgcctcga gtggtacctc cagcggtgca tccagcggtg catccagcgg cagttccagc
     1981 acgcgctcgt cgagcgacag aaattcttcc agttcgcgcg attccggaaa cgacgcgtca
     2041 cgtcgcggtc tcggaggttc cggcagcggc cggacctgat ctccgctccc gatattcacg
     2101 agaggcgcgc ccatcccggc gcgcctctcg tgcgttcacg atcgaaaata cgaatagctt
     2161 tcgggtatgc agcttgtgag ccgcgtaaac cactcatgaa gcagttctga agcaatcgtg
     2221 agcgacgcga cggcggcagc cattgtcgcg acgattccat ggatcgtcac gcccatagtc
     2281 gcttcactgc gcatggcacg ctccacgtcc ctggacgccg aatcaccgca gccgccagcc
     2341 gatgcgccac gcgttaccgt aatagttccc gcgcgcaatg agtcgcgaaa catcgccgcg
     2401 tgtctccagt cgattctggc ttcgtcctac ccgcaactcg aagtcatagc agtaaacgat
     2461 cattcagagg acgacactgc tgcaatcgcc cgctcgatcg gctcgtccga tccgcgtctc
     2521 atcgtgctgg ataatcctga tctgcccgcc gactggttcg ggaagcagtg ggcctgccag
     2581 acaggcgccg atgcagcgtc gggcgagata ctcgtattca tggatgctga cgcgcgtgcc
     2641 gcgccggatc tgatcgtgcg atccgtgaac ggtatgctcc gtacgcaagc ggatttctat
     2701 tccgtgctgg ggcgccagga gatggtcacc ttctgggagc gtttgctcca gatgcaggtc
     2761 ttcaccgttc tgataacccg attcggcggc accgagatag tgaatcgttc cacgaaggca
     2821 tctgcgaaga tcgcgaacgg ccagtatctg atggtgcgtc gcgcaaccta cgacgaattt
     2881 ggcggccatg gactcgtgcg cggttacgtc gccgaggatc tgatgctcgc gcagcgctac
     2941 ttcgagctcg ggaaaaagac ggtgctggtg aagggtatgg atcagctatc gacgcgcatg
     3001 tacacgtcgc tcgcggagct catgggaggc tggcgcaaga atctctttgc cggcggtcga
     3061 cattcgatgc cgttcggggg ccgtgctacc tggctcgccc ccgtgctgtt accactccca
     3121 ttcctgatgc agctggcgcc gcctgtacta ctcgtcgtgg cgatcgcgtt ccggatcccc
     3181 gcgcttgagt tgtggggagc tattacgacg ggcgtcatac tgctcacgtg gctcgcctat
     3241 tatcggttcg cccgtgtgcc gatgctgtac gcgttgctct ttccgctagg cgcggcggtc
     3301 acgctctaca tcacgctctc ggcggtattg cgcggcagcc gcgtcgagtg gaagggacgc
     3361 gagtacgaga gcgtacatcc cgcgagctcc tgacccgtat cggctacttg ccgcgctgac
     3421 cacccttggc cgaggtagcc tgcggcttgg gacgaggggc cgaagcattc acggtccgca
     3481 acttggatga aggaagcgtg ctcggagtcg ctcccgactt tgaacgcgat ggcttgcgtg
     3541 agaaatcagg aatgtcgcgt gtcgattttt ttttcataaa gcccccagag tgtgatggct
     3601 cggggtccgg agaccggaca ccgaacttct ccgccttctc cctgaacgtg aacgtcgtgc
     3661 cgcactgggt gcagacgtag ctcccggtgc gcttgcccag atcgtactcc ttcgccagcg
     3721 caggatggtc acacggtctg tcaccccatt cctgtttgat tgcctcggcc cgctttttct
     3781 gcatgatgta agataagcga cgacgggccc tagccgcccc ccacgctgtc cggccgagga
     3841 atttgtcgtc gcatcctggc gaacggaatc gcgacgccag ccacgtgcac tgcatcgcgc
     3901 tccaacaccg agaatccgag cgctgcgtaa aggggctcac cggggctcgt cgcgatcagt
     3961 tcgaagctgc gaaaccctgc cctccaggcg gcttgcgcac actcggcgta caatcgccgc
     4021 gcgagtcccc gacgcgccca gcgcggatga acgaaaaatg ctcgtatacg agccgcgtcc
     4081 accgtcggat cgagccgggg atcctccatg tccttcatct gatcgccgcc gtaaagcgtg
     4141 cgccgcgcgc tccagccacc agctgcgaca ggttcgcgat cctcttc
//
LOCUS       DATIMD010000571         2341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2255462, whole genome shotgun sequence.
ACCESSION   DATIMD010000571 DATIMD010000000
VERSION     DATIMD010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2255462"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            356..2110
                     /locus_tag="VLI40_12805"
     CDS             356..2110
                     /locus_tag="VLI40_12805"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSU98105.1"
                     /translation="MTTGRRSTLTTFPTLVALALLTIAGCDPHVAPVDMVLRNGSVVT
                     MDSTIPAGQAIAISSDTIVAVGSDSAIQRYVGPHTKVIDLGGHLAIPGFNESHGHFTG
                     LGQTLTELRLMGVPSWQQIATMVSDAAKAAKPGAWIQGSGWHQEKWNRSPGRVVEGFQ
                     TNDLINQAAPNNPVVLTHASGHALIANAAALRLAGITSSTPNPPGGRIIKDASGQPTG
                     VLVDGAQSLMRAALAKSFAARSPEEASADFTRQIHLATQNALANGVTTFQDMGESFAT
                     IDAIKKMVDAGDMPLRLYILVRANEARPDDVDSLTAHRIIDHGNGHLTVRAIGEIAAD
                     GALGSRSAWMLQPYDDDPKNTGLNVTPMPRIREIAELGIAHGFQISVHAIGDRANREA
                     LDTYQSVFNEHHVKSDTLRWRIEHAQHLNPADIPRFAQMGVVASMQGIHACSDAPYVL
                     PRLGMQRAQEGAYVWQSLWKTGAVVTNGTDVPVEEISPIASFHCSVTRDMVGTDSAFF
                     PAQKLSRQQALQTYTTNGAYVEFHEHKTGSLTPGKWADITVLSRNIMTAPDDSILGTK
                     VLYTIVGGKVVYSGAQSH"
     gene            2160..>2341
                     /locus_tag="VLI40_12810"
     CDS             2160..>2341
                     /locus_tag="VLI40_12810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98106.1"
                     /translation="MKGMACLTAVLTLFTLESSAASAQAARPASAVSSQPIVLHAARL
                     FEVVPGRIVSPGEVLV"
BASE COUNT          458 a          758 c          725 g          400 t
ORIGIN      
        1 gagagcgttc gcatctgatc cgtccttgaa gagtgggtga gtgagactgg cggcgcgatg
       61 gtcacggagg tgcgccgatt gacgccagat aggatacacc cctatgctat aatgtcaagc
      121 ggaatgaacg catgccgcca ggagagttgg caagcttgag ggaaactgcg tatctgcttc
      181 ggtcgcctgc gaacgcggcg cgattgcttg cggcgttgat gcgcgcggaa aggtttacga
      241 aatcccacga catcgccgac ctgaggactc gactcgggct cgcggctgcg gcatccgcgc
      301 taatattatg gcgctcccag gtgatacgca cgccacgcaa cagaggcctt tactgatgac
      361 aaccggacgt cgatccactc tcacaacctt tccgaccctc gtcgcgctcg cgttgctgac
      421 gatcgcggga tgcgacccgc atgtcgcgcc cgtcgacatg gtgcttcgca acggcagcgt
      481 ggtgacgatg gattcgacca tccctgccgg tcaggcgatc gccatctcga gcgacaccat
      541 cgtcgccgtc ggctccgaca gtgcgatcca gcgctacgtc ggtccgcaca cgaaggtcat
      601 cgacctcgga ggacacctcg cgattccggg cttcaatgag tcgcacggtc acttcaccgg
      661 actcggtcag accctcacgg agctgcgttt gatgggtgtg ccgtcgtggc agcagatcgc
      721 cacgatggtg agcgacgcgg cgaaggccgc gaaaccgggt gcctggatcc agggatccgg
      781 ctggcatcag gaaaagtgga atcgctcgcc gggccgcgtg gtcgagggct tccagaccaa
      841 cgacctcatc aaccaggccg cgccgaacaa tccggtcgtg ctcactcatg ccagcggcca
      901 tgcactgatc gccaacgccg cggcgctacg gcttgcggga atcacctctt caacgccgaa
      961 tccaccgggc ggccgcatca tcaaggacgc cagcggccag ccaaccggtg ttctcgtcga
     1021 cggcgcccag tcgctcatgc gcgccgcact ggcgaagagc ttcgcggccc ggtcgcccga
     1081 agaggccagc gccgacttca cccgtcagat ccacctcgcc acgcagaatg cgctcgccaa
     1141 cggtgtcacg acgttccagg acatgggcga gtcgttcgcg acgatcgacg cgatcaaaaa
     1201 gatggtggat gcgggcgaca tgccgcttcg tctctacatc ctggtgcgcg cgaacgaggc
     1261 gcgtccggat gacgtagact cgctcacggc gcaccgcatc atcgatcacg gcaacggtca
     1321 cctcacggtg cgcgcaatcg gagagatcgc ggccgacggc gcgctcggct ccagaagcgc
     1381 ctggatgctg cagccgtacg acgacgatcc caagaacacc ggactcaacg tcacgccgat
     1441 gccgcgaatc agggagatcg ccgagctggg catcgcgcat ggcttccaga tctcggtgca
     1501 cgcaatcggc gatcgcgcca accgcgaggc gctcgataca tatcaatcgg tcttcaatga
     1561 gcatcacgtg aagagcgaca cgctgcgctg gcgcatcgag cacgcgcagc acctgaaccc
     1621 cgcggacatc ccgcgcttcg cgcagatggg cgtggtcgca tcgatgcagg ggattcatgc
     1681 ctgctccgac gcgccgtacg tacttccgcg tcttggcatg cagcgcgcgc aggagggtgc
     1741 ctacgtctgg caatcgctgt ggaagaccgg cgcggtcgtc acgaatggca ccgacgttcc
     1801 ggtggaagag atcagtccga tcgcttcatt ccactgcagt gtgacgcgcg acatggtcgg
     1861 caccgactcc gcgttcttcc ccgcgcagaa gctcagccga cagcaggcgc tgcagactta
     1921 caccaccaac ggcgcgtatg tcgagttcca cgagcacaag accggatcgc tgacgcccgg
     1981 caagtgggcc gacatcacag tcctttcccg caacatcatg accgcgccgg acgactcgat
     2041 actcggcacc aaagttctct acacgatcgt gggcggaaag gtggtctact cgggcgcaca
     2101 atcacattga ttgcgccagc gccgacaatg agcacctcga caaatctgac ggagtttgta
     2161 tgaaaggcat ggcgtgtctc actgcggttt tgacgttgtt cactctcgaa tcttccgctg
     2221 cgtcagcgca ggcggcgcga cctgcgtcgg cagtcagctc gcagccgatc gtgctgcacg
     2281 cggcgcgact gttcgaggtg gtgccgggca ggatcgtgag tcccggcgaa gtgctggtgc
     2341 a
//
LOCUS       DATIMD010000572         3009 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2834978, whole genome shotgun sequence.
ACCESSION   DATIMD010000572 DATIMD010000000
VERSION     DATIMD010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3009
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2834978"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..989)
                     /locus_tag="VLI40_12815"
     CDS             complement(<1..989)
                     /locus_tag="VLI40_12815"
                     /inference="COORDINATES: protein motif:HMM:NF023169.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMIN domain-containing protein"
                     /protein_id="HSU98107.1"
                     /translation="MKLPLITLAAFAIAPGHSLTPLASQSYAACSGACSRTAAPTVTG
                     VSVVPATGHADVVIGVQTPVEIQDFTLDAPYRVVIDIKGASLAEAPSTYDRVARGGIT
                     DVRVSQFSATVVRVVLQLDGSHPYEVKRGNNEVRIAVSGGSGGFASWTGLNDRRPDVA
                     HDDARSNDASPSIAPPRSTMTVVSQPSYLPSVQQSNQPRITVTYQDADIRDVIAAFAT
                     FAGRTIVTGRDVTGTVTAEIRNQPWDVALRAILQGQGLAASEDPASGIITVDSYANVQ
                     ARQAFEPLVTQLIPVNYAKADSLVPVVTKLLARDCVAGGPASGAGAPSATATS"
     gene            complement(986..1474)
                     /locus_tag="VLI40_12820"
     CDS             complement(986..1474)
                     /locus_tag="VLI40_12820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98108.1"
                     /translation="MTTRKRGSVANHPLVITATLVMAIALLLLARSDAHAQADQLAAA
                     HPGQDSTPAVTFNRETFTYDPDGRRDPFVSLVKSSEIRPTLSDLRLTTIAFDPLGANS
                     VAVLRDLGTKEQYRVKVGTALGRMRVVRIDPKVVTFALEEFGFSRQETLAIGDTTIKR
                     TP"
     gene            complement(1471..2085)
                     /gene="pilO"
                     /locus_tag="VLI40_12825"
     CDS             complement(1471..2085)
                     /gene="pilO"
                     /locus_tag="VLI40_12825"
                     /inference="COORDINATES: protein motif:HMM:NF016253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA];
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HSU98109.1"
                     /translation="MAIGANMTQREQALAGSGIIAVLLAVAFWWFIFTPKAVAIGSLT
                     AHVDSVETNNRKARVAIARGTVQQLQTEAAQYQKNLDMMRELVPTSNEVPSLLENVST
                     AARRVGLDLASVEPVPVISGEQFDTYRYKVSVMGGYHELAEFLTNVGSLNRIMAPIGL
                     DLKIHAGEKDKSHQKAGESLLDASFQLQTYVARTAPLTLGKETK"
     gene            complement(2087..2875)
                     /locus_tag="VLI40_12830"
     CDS             complement(2087..2875)
                     /locus_tag="VLI40_12830"
                     /inference="COORDINATES: protein motif:HMM:NF016992.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HSU98110.1"
                     /translation="MIEINLLPGAKRTTRRGVNFAPGAAIASLGANFKDKYLIFAIIG
                     VVLGLGGIAGMYAFQARQQSTLDARESAAAADSARFAAVLTARSHAETTRDSVYQQLA
                     IIKSIDDTRYTWPHLLEAVNLAVPQYTWLVSITQTSAVTTTAGMGGDTSAAGKAKIDS
                     AKKAGGMKQASSASRKAHADSLFNGVASTMSFRVVGQTVDVQALTQFMKNLEASPFIK
                     NVQLTRSDLVTAEGKEVTEFQLEAQTEVPPPHVLQMVPLSLAVR"
BASE COUNT          564 a          915 c          922 g          608 t
ORIGIN      
        1 aagctcgtcg ctgtggcgct tggcgcaccg gcgccgctgg ccggtccgcc tgcaacgcaa
       61 tccctcgcga gcagcttggt aaccacgggc acgagcgaat cagccttggc gtagttgaca
      121 gggatgagct gagtgaccag cggctcgaac gcctgacggg cctgcacgtt ggcatagctg
      181 tcgacggtaa tgattcccga cgctggatct tcggatgcag cgagcccctg tccctgcaga
      241 atcgcacgca gcgcgacgtc ccatggctga ttccgaatct ccgccgtgac cgttccagtt
      301 acgtcgcgcc ctgtgacgat cgtgcggccc gcgaatgtgg cgaacgcggc gataacgtcg
      361 cgaatgtctg catcctggta cgtgactgta atgcgcggct gattcgactg ctgcacactc
      421 ggcagatatg acggctgact gaccacagtc atcgtcgagc gaggcggcgc tatcgatggc
      481 gaggcgtcgt tggagcgggc gtcgtcgtgg gccacgtccg gccggcgatc gttgagcccg
      541 gtccaggagg caaatccgcc ggagccaccg ctcacggcga tgcgaacctc gttgttcccg
      601 cgcttgacct catatggatg cgagccgtcg agctgcagca ccacacgaac gacggtcgca
      661 gagaactgag acactcgcac gtcggtaata ccaccgcgcg cgactctgtc atacgtggaa
      721 ggcgcctcgg ccagcgacgc gcccttgata tcgatcacaa cgcgataggg tgcgtccagc
      781 gtgaagtcct gtatctcgac tggtgtctgg acgccaatca cgacgtcggc gtgaccggtc
      841 gcggggacga cgctcactcc tgtcaccgtc ggtgctgccg tccgggagca cgctcccgaa
      901 catgcggcgt acgactgtga cgcgagcgga gtaagtgaat gacccggcgc gattgcgaac
      961 gcggcgaggg tgatcagggg caacttcatg gcgtcctctt tattgtggta tcaccgatcg
     1021 cgagcgtttc ctgccgactg aatccaaact cctcgagcgc aaacgtgacg acctttggat
     1081 cgattcgaac tacgcgcatg cggcccagtg cggtgccgac cttgacgcgg tactgctcct
     1141 ttgtcccgag atcacggaga actgctacag agttcgcgcc gagcggatcg aatgcgatgg
     1201 tggtcagccg cagatccgac agcgtcggac gaatttcgct gctcttgacc agtgatacga
     1261 acggatcacg ccggccgtcg ggatcgtacg tgaacgtctc gcgattgaat gtcaccgcgg
     1321 gagtgctatc ctgaccggga tgggcggctg cgagctgatc agcctgcgcg tgcgcgtcac
     1381 tcctggcgag aagcaacagc gcgatcgcca tgaccagcgt cgcagtaatc acgagtgggt
     1441 ggttcgcaac gctaccacgc ttgcgcgtcg tcattttgtc tccttgccca gcgtgagcgg
     1501 cgctgtgcgt gcgacgtagg tctgcagttg gaagctcgca tcgagcaatg attcaccagc
     1561 tttctgatgc gacttgtcct tctcacccgc gtgtatcttg aggtccagtc ctatcggtgc
     1621 catgatgcgg ttgagcgatc cgacgttggt gagaaattcg gcgagctcat gatagccgcc
     1681 catcaccgac accttgtagc ggtacgtatc gaactgctcg ccggaaatca ccggaaccgg
     1741 ctcgaccgat gcgaggtcca agccgacgcg acgcgccgcc gtggatacat tctcgagaag
     1801 cgatggaacc tcgttcgacg tcgggacgag ctcgcgcatc atgtcgagat ttttctgata
     1861 ttgcgcagct tccgtctgca actgctggac tgtgccccga gctattgcaa cgcgcgcctt
     1921 tcgattgttg gtctcgacgg aatcgacatg agctgtgagc gagccgattg ccaccgcttt
     1981 gggtgtgaaa atgaaccacc agaatgccac ggctagcaga accgcgatga tccccgagcc
     2041 ggcaagcgcc tgttcgcgct gcgtcatgtt tgcgccgatt gccatgctag cgcaccgcca
     2101 gtgaaagtgg aaccatctgc aggacgtgcg gaggcggtac ttctgtctgc gcttccaatt
     2161 gaaactccgt cacttccttg ccttcggccg tgaccagatc ggagcgcgtc agctgcacgt
     2221 tctttatgaa cggcgacgcc tccagattct tcatgaattg tgtcagcgcc tggacatcca
     2281 ccgtctgtcc gacgacccgg aatgacatcg tgctcgcgac gccgttgaac agagagtccg
     2341 cgtgcgcctt tctcgaagcg gacgaagcct gcttcattcc gccggctttc ttggcgctgt
     2401 cgattttcgc cttgcccgcg gctgacgtgt cgccacccat gccggcggta gtcgtgacgg
     2461 cactcgtctg ggttatcgat accagccacg tgtactgcgg aactgcgaga tttaccgcct
     2521 cgagcagatg cggccaggta tatctcgtgt cgtcgatcga cttgatgatg gcaagctgct
     2581 gatatacgga gtcccgcgtc gtctctgcat gactgcgagc ggtcagcacc gcggcaaacc
     2641 gcgcggagtc cgccgccgcg gcagattcgc gcgcatccag cgtgctctgc tgtcgcgcct
     2701 gaaacgcata catgcctgcg attccgccca acccaaggac gacgccgatt atcgcaaata
     2761 tgagatactt gtccttgaag ttcgcgccga ggctcgcgat tgccgcgccc ggggcgaagt
     2821 tgacaccacg acgggttgtg cgcttcgcgc cgggaagaag attgatttca atcatgacgc
     2881 ctgccggaga ccgagtccaa ccggaagcat gaggagcggc gcgatttcat ccatgctgaa
     2941 attggcaagc gcaccgtcgc gtacgtggag gttcgcgagc gggttcgcat attcgacctt
     3001 gagatgaag
//
LOCUS       DATIMD010000573         1909 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3702964, whole genome shotgun sequence.
ACCESSION   DATIMD010000573 DATIMD010000000
VERSION     DATIMD010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3702964"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1758
                     /locus_tag="VLI40_12835"
     CDS             <1..1758
                     /locus_tag="VLI40_12835"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSU98111.1"
                     /translation="LATDAPPTESEITRYKSQETLSLVLELESAMRKAETLLAGQVFD
                     GDPLAYVKETEQSLAVKPSDVTRVLRKYLTHGRVVLSMVPAGKLGLAADTTRAYVIAT
                     PGEAPVAASSATAAANAAASAPVDSIRETPETFDRTVAPAPDGEASLAFPAIQMRTLS
                     NGIRVAVVEDHRTPVVQGDAVIDIPGTADPAGKTGLSDVVMQLLGEATKSRTAAQIAD
                     ARSALGNFTSATSFLVTTQNVDSALALMGDELRNPAFPEAALQRIEANQIAQLVRQND
                     DAQYLADRVLSNALYGAGHAYARSTTAAEIRSMTRDDVERFYQTYLRPPNIQFVIAGD
                     ITPDEAVARLQHYFGNWKAGTRARVTPPPPRAPRSTAIYLYDRPGSAQSVILVGAPGP
                     RRDAPDHYATQLMNTALGGAFNSRLNLDLRERRHFTYGASSDFEFRRPPESGVFRAGA
                     AVDAQKTDSAVQAFMKDIGDVGGNKPITATELEFAKSASVKRLPLQFETTLARAGAVN
                     ALLSDDLNLQYYQTLVPNLKRVTSADAARAGKAHLDADHMAIVVVGDRKVIEPGLRAL
                     GLAPVVIVPPLSSVQPQVQ"
BASE COUNT          376 a          611 c          585 g          337 t
ORIGIN      
        1 ctcgcaaccg acgcacctcc aacggaatcc gagattaccc gctacaagag ccaggagaca
       61 ctgtcgctcg ttctggagct cgagagcgca atgcgcaagg cggagacgct tctggcgggc
      121 caggtgttcg acggcgaccc gctcgcctat gtcaaggaga cggaacagtc actagccgtg
      181 aaaccctccg atgtgacgcg tgtgttgcgg aagtatctca cgcacggacg agtggtactc
      241 agcatggttc cggctggcaa gctgggtctc gctgccgaca cgaccagggc gtacgtcata
      301 gcaactcccg gtgaagcgcc agttgccgcg tcgtcagcaa ctgccgcggc taatgctgcg
      361 gccagtgcac ctgtcgacag tatccgtgag actcccgaga cgttcgaccg cactgtggcg
      421 cctgctcctg acggcgaagc ctcactggcg ttcccggcaa tccagatgcg aactctgtcc
      481 aacggcattc gtgtagccgt tgtcgaagac catcgtacgc cagtggttca gggtgatgca
      541 gtgatcgaca taccgggaac ggcagacccc gcaggcaaga cgggtctttc cgatgtagta
      601 atgcagctgc ttggcgaagc cacaaagtcc cgcaccgccg cacagatcgc ggacgcgagg
      661 tcggcgctcg gcaatttcac gtcggcgacc agctttctcg tgacaaccca gaacgtggac
      721 agcgcgctgg cgttgatggg cgacgagctg cgcaatccag cgttccctga agcggcgctg
      781 cagcggatcg aagcaaacca gatcgctcag ctcgtgcgac agaacgacga cgcacagtat
      841 ctcgccgatc gcgttctctc caacgccctg tacggtgcgg gccacgcgta cgcacgcagc
      901 accaccgcgg cggagattcg ctcgatgacg cgtgacgatg tggagcgctt ttaccagacg
      961 taccttcgtc cgccgaacat tcagttcgtc attgcgggag acatcacgcc cgatgaagcg
     1021 gtagccaggc tgcagcatta tttcggcaac tggaaagcgg gcactcgtgc tcgcgtcaca
     1081 ccgccgcctc cccgtgcgcc tcgctccact gcgatctatc tctacgaccg gcccggctcg
     1141 gcgcagagcg tcatactcgt cggtgctccg gggccgcgca gagatgcgcc ggatcactac
     1201 gcaactcagc tgatgaacac cgcattgggc ggcgcgttca acagtcgtct gaacctcgat
     1261 cttcgcgagc gccgccactt cacgtatggc gcgagctccg acttcgaatt ccggcgtcct
     1321 cccgagtccg gcgtgttccg tgccggcgct gcggtcgacg cacagaagac ggacagtgcg
     1381 gttcaggcgt tcatgaaaga catcggcgac gtcggtggca acaaaccaat tactgcgacc
     1441 gagctggagt tcgccaagtc ggcgtcggtc aagcgactac cgctccagtt cgagaccacg
     1501 cttgcgcgcg caggcgcggt gaatgcgctg ctgagcgacg acctgaatct ccagtattac
     1561 cagaccctcg ttccaaatct caagcgggtg accagcgcag acgcagcgcg ggccgggaag
     1621 gcgcatctcg atgccgatca catggccatt gtcgttgtag gtgatcgcaa ggtgatcgag
     1681 ccaggtcttc gcgcgctcgg tcttgcaccg gtcgtgatcg tgccgcctct ctcatcggtg
     1741 cagccacagg tccaatagca aagcgatcac gtcgcgggcc aagcgccgag catctggcgc
     1801 accgcgatca gctggccgac atgatacgca gtgtggtcga ccgcgacgag gatggtgcgc
     1861 aggtaagtct gtccatcgcc ccacgggatc gtcgcggtga gatcgagtg
//
LOCUS       DATIMD010000574         1538 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5725303, whole genome shotgun sequence.
ACCESSION   DATIMD010000574 DATIMD010000000
VERSION     DATIMD010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5725303"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..770)
                     /locus_tag="VLI40_12840"
     CDS             complement(<1..770)
                     /locus_tag="VLI40_12840"
                     /inference="COORDINATES: protein motif:HMM:TIGR00277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDIG domain-containing protein"
                     /protein_id="HSU98112.1"
                     /translation="MPAVNIPALQERERVQSDFLVIERADKKTANGDPFAILTLGNSS
                     GRIDTSPIWSDKLDWADGADRGKVVQAIGDIALYGRNGSAKRQLALSAPLRVIPQNQI
                     DVLSFLESVGDCTALWDWMDKQRAAMQSRTLKNVVDLFFANDEFRVRFERTPGSPAGH
                     HAKLGGLLLHTFEVASIARATARTTRANQDLVFAGALLHDIGKVEAYEVAPTGFSTTP
                     CGLLLGHVVLGALMLERALAQLGAPICSEGQILELQHM"
     gene            880..1506
                     /locus_tag="VLI40_12845"
     CDS             880..1506
                     /locus_tag="VLI40_12845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98113.1"
                     /translation="MPKTDVWFDPSRYATVAERIALFYRSHPNGRILTELVNRDAESV
                     TFKALVFRGDGDTVPAATGWATEREGDGDINTVACLENTETSAIGRALANLGYTASKE
                     RPSVEEMRKAARTRERRKSAAVSTATHATAQATAHAAVQANTVGESSPTYGHAVEDIL
                     DLLREAERAGLKRVRADRLRTRLEQGPPLLAGRLLEIERSLRKWLEQR"
BASE COUNT          274 a          410 c          560 g          294 t
ORIGIN      
        1 atcatgtgct ggagctcgag gatctgccct tcgctgcaga tgggtgcgcc gagttgtgcg
       61 agtgcgcgct ccagcatgag tgcgccgagt acgacgtggc cgaggaggag gccgcaggga
      121 gtggtggaga atccggtggg agccacttcg tatgcttcga ccttgccgat gtcgtgcagc
      181 agggcgccgg cgaagacgag atcctggttc gcgcgcgtgg tgcgcgcggt tgcacgcgcg
      241 atcgaggcga cttcgaaggt gtgaagaagc aagccgccga gcttggcgtg atgtcccgcg
      301 ggtgacccgg gagtgcgctc gaagcgcacg cggaattcgt cgttggcgaa gaagagatcg
      361 acgacgtttt tgagagtgcg ggattgcatt gccgcgcgct gcttgtccat ccagtcccag
      421 agtgcggtgc agtcgccgac cgattcgaga aacgacagga cgtcgatctg attctgcggg
      481 atgactcgga gcggagcgct gagtgcgagc tggcgtttgg cggatccgtt gcggccgtag
      541 agcgcgatgt cgccgatcgc ctggacaacc ttgccgcgat cagcgccgtc ggcccagtcc
      601 agcttgtcgg accagatggg cgacgtgtcg attcggccgg aggaattgcc gagtgtgaga
      661 atcgcgaacg gatcgccgtt ggcggttttc ttgtccgcgc gctcgatcac gaggaaatca
      721 ctctggactc gctcgcgctc ctggagcgca gggatattga cggctggcat cgcactcaag
      781 gtggtgtcgc gtgtgcgatc cggcaatagc gcggattggc ttccttgctt tcggtatttg
      841 ttcggtataa gctttctctt ccaacacgcc gagtgcgcca tgccgaaaac agatgtgtgg
      901 ttcgatccaa gccggtacgc gacagtcgcc gagcgaatag cgctgttcta tagaagtcac
      961 ccgaatgggc ggatcctgac ggagctggtg aatcgggacg ccgagtcggt gacgttcaag
     1021 gcgctggttt ttcggggcga tggcgacacg gttccagcgg cgacggggtg ggcgacggag
     1081 cgcgagggtg acggcgacat aaataccgtc gcgtgtctcg agaacacgga gacgtcggcg
     1141 attgggcggg cgctggcgaa tctcgggtac acagcgtcga aggagcggcc gagtgtggag
     1201 gagatgcgga aggctgcgcg cacgcgggag cggaggaaat cggctgccgt ttccacagca
     1261 acgcacgcga cggctcaggc gacggctcac gccgcggttc aggcgaatac tgtcggggaa
     1321 tcgtcgccga cgtacgggca tgctgtcgag gatatcctcg atctgctccg ggaagcggag
     1381 cgggctggtc tcaagcgggt ccgtgcagat cgtttgcgca ctcgactgga gcagggtccg
     1441 ccgcttctgg cgggccggtt gctcgagatc gagcgctctc tcagaaaatg gctggagcaa
     1501 cggtgatcgt gttaccggta tccgtctacc tcaatgag
//
LOCUS       DATIMD010000575         6227 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3985974, whole genome shotgun sequence.
ACCESSION   DATIMD010000575 DATIMD010000000
VERSION     DATIMD010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6227
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3985974"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1005)
                     /locus_tag="VLI40_12850"
     CDS             complement(<1..1005)
                     /locus_tag="VLI40_12850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98114.1"
                     /translation="MKARVLAGAGVGIAALAAFASIGTARPQGPGHSDPSRYGHSDRV
                     ERHMLPAVSTGPMAPVWSPDGRWIAFSMRGDIWKIPADGGEAIALTSGPGDYFEPAWS
                     PDSKRIALSMDTGNANLDIGVVSADGGTVQRITSDPAVDVEPVWSHDGKSIYFVSPRG
                     PGRGESFHIYRHDLASNTDEQVVAGIQPSIAPDGNQLAYVAPERGRLGSGGIWVKQLP
                     SGEPHLVQYEESEYRMRPVWTPDGTSLMYVSDEGGSNDVMIVPVDGGNPERLTADARD
                     EYEPSPSPDGNRFAFVSNRAGATVLYTAGIGGGPFSSWSAVQIRSRKPVVPNGRVHVT
                     V"
     gene            complement(1087..2574)
                     /locus_tag="VLI40_12855"
     CDS             complement(1087..2574)
                     /locus_tag="VLI40_12855"
                     /inference="COORDINATES: protein motif:HMM:NF024181.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusD/RagB family nutrient-binding outer membrane
                     lipoprotein"
                     /protein_id="HSU98115.1"
                     /translation="MRLSTTIGVTSALAVALLASGCNNNDLTGINKNPNAPGSVTAQF
                     LFPTAVSDVVGRARGGSFDLTLTSLWAQHIAMDRFTDEDTYSIRPDNINGYWSGFYAG
                     GLQDLATILAQTSKADSANIVAPALVMKSWTFGIMTDIWGDIPYSQANKSDPSSPPQY
                     DAQKDIYTGILADLKTASDISVPGGATYGTADLIYNGDATKWKKFANSLRLRYALRLS
                     KVDPATAQAQAAAAIAAGVFASNADNALLKWPGDGTNNNPIYNNFVTRDDQHMSQTLV
                     NILKSLYISIGPTPADTVFDPRLAVYADPIISSPSKPLYVGAPNGLQDDAAIAIGINN
                     TSRVGIAYRSKTTPSILMAYSEVLFDEAEAAARGWAPGDAATLYNAGIRASMQYNGIA
                     DNVTTAYLASPRVAYSPATGLQQIALQRWIALFSEGTEAYSSWRRTGVPDLKPGPAAI
                     TSPQVVPRRLTYPVSEQSFNDAALQAASAAQGGATLNGRVWWDKP"
     gene            complement(2609..5743)
                     /locus_tag="VLI40_12860"
     CDS             complement(2609..5743)
                     /locus_tag="VLI40_12860"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSU98116.1"
                     /translation="MGRLVRLTTVVIGALSLLPSWSHAQGSAQVTGRVTAQGGAPLPG
                     ASVFVTGMNIGSTTGEDGHYSFTVPADRITGKAVTLSARRIGYKIETASVVLTAGTNT
                     HDFTLTATTTALEGVVVTALGIERDKRSLGVAQTSINASELTAAREPNIVNALAGKVP
                     GVEITNDGPPGGSSRIVIRGENSITGNNQPLFVVDGIPIDNSASTNSGFGGFDFGNAA
                     SDINPDDIESISVLAGANAAALYGARAANGAIVITTKTGKGTKGMGVKLSQNLTFETP
                     LRLPEFQNVYGQGSGGQFAYKDGKGGGISDNVNRSWGPKMDGRPIVQWWSNGVPEPWV
                     PAPNNVSDFFNTGRTSTTNVAVTAAGPRSDVRISATDLDVKSIYPTNTLRRLNLSMNG
                     GAQITSKLSTRANVQYIQDDNQNRPQTGYNANSAIFNLMIWGGRQRDLPHMKNYINPD
                     GTQNGPNHTTTNNPYWDVYADPNADTRDRVIGSGDVTYKFNDWLTGMVRTGTDWHRDW
                     RKQEYANGNIGVDYAGGAFFEQNLFVRETNSDFLLTADKKPVGKLGMTFNLGGNRRDN
                     ASSNYNDGTPHLVIPGTFNIGNSAVTPQVSSFASQRQTNSLYGQAQFSWDNYLFLDAT
                     GRNDWSSTLPQGNNSYFYPSVSGSFVFTDAVPALHLGGLLSYGKLRASWAQVGNDADP
                     YQLAVTYSPGTPFGSVPRFTVPDQIPNANLKPERTRSWETGAELRFLNDRVSFDGSYY
                     NKLTSDQIIPAQITSTIGYTSAVVNAGSLRNHGIEGQLNVTPIKHGSFQWDVTANYAR
                     NRSEVVSLYKGLQTVVLGAYWGLSVEARANQPYGTLYGNPYLRNAQGQLVTLNGLPQI
                     DPTQRVLGHYSPDWIGGLQNKFHYGHWDFSFLFDTKQGGQIFSTTKMFGEESGVLKSS
                     LLGRETAETLADGGGLIVDGVNADGSPNTTKVTSQAYFNSLFQNHEANIVSATFTKLR
                     EVRLNYEVPQSVASRFRVSAMNVAFVGRNLWLHAAAPNIDPETAFDNRNVQGIEFIGV
                     LSTKSMGFSVNVTP"
BASE COUNT         1112 a         1838 c         1961 g         1316 t
ORIGIN      
        1 gacggtgacg tgaactcgcc cgttcggcac caccggcttc cggctgcgaa tctgcaccgc
       61 cgaccaggac gagaaaggtc ctccgccgat acctgcagta tagagcacgg tcgcgccagc
      121 gcgattcgac acgaatgcaa acctgtttcc atccggactc ggcgacggct cgtactcgtc
      181 gcgcgcgtca gcggtgagac gttccggatt tccgccatcg acgggtacga tcatcacgtc
      241 gttgcttcca ccctcatccg acacgtacat caacgaagtg ccatccggag tccacaccgg
      301 tctcatgcga tactcgctct cctcgtactg cacgaggtgc ggctcgccgg acgggagttg
      361 cttcacccag atgccgccgc tgccaagccg gccgcgctcg ggtgcgacat acgcaagttg
      421 atttccatcc ggagcgatgg agggctggat tccagcgacg acctgctcgt cggtattgct
      481 cgcaagatcg tgccggtaga tgtgaaacga ctctcccctg cccggtccgc gcggacttac
      541 gaagtagatg ctctttccgt catgactcca gacaggctcg acatccactg caggatcgct
      601 cgtgatgcgt tgcaccgtgc cgccgtcggc actcacgacg ccgatgtcga gattggcgtt
      661 gcccgtgtcc atcgacagcg cgatgcgctt gctatcggga ctccaggcag gctcgaagta
      721 gtcaccggga ccggacgtga gcgcaatcgc ttcgccgcca tcggccggaa tcttccagat
      781 gtcgccacgc atggagaatg cgatccagcg cccgtccgga ctccacacgg gcgccatcgg
      841 accggtggag actgccggaa gcatgtggcg ctcgacacga tccgagtgac catagcgact
      901 gggatcggag tgaccgggcc cctgggggcg agcggttccg atcgatgcga acgcagccag
      961 tgccgcgatt ccaacacctg cgcccgccaa tacacgtgcc ttcatgcgca catctctccc
     1021 ttacgcaaac cggggacggt tacacaccgc ccccggttca ctcgcaagac aatgttcagg
     1081 ataatattac ggcttgtccc accagacgcg accgttcagc gttgctccgc cctgcgccgc
     1141 actggccgct tgcagcgccg catcgttgaa tgactgctcc gacaccgggt aggtgagccg
     1201 acgcggcaca acctgcggcg acgtgattgc agccgggccc ggtttgagat ccgggacgcc
     1261 ggtacgccgc cacgagctgt acgcttctgt tccttccgag aacagcgcga tccagcgttg
     1321 cagcgcgatc tgctgcagac cggtcgccgg cgagtacgca acgcgaggcg acgcgaggta
     1381 cgcagtggtc acgttgtcag cgattccgtt gtactgcatc gatgcccgga tgccggcgtt
     1441 gtacagcgtg gcagcgtcac cgggggccca accgcgtgct gcggcctccg cttcgtcgaa
     1501 caggacttcg gagtacgcca tcagaatcga cggcgtggtc ttgctacggt acgcaattcc
     1561 cacgcgcgac gtgttgttga ttccgatcgc gatcgcggca tcatcctgca atccgttggg
     1621 cgcgcccacg tagagcggct tgctcggact ggagatgatc gggtcggcgt acaccgcgag
     1681 acgcggatcg aacaccgtat ctgccggcgt cggtccgatc gagatgtaca gactcttgag
     1741 gatgttcacc agcgtctggc tcatgtgctg gtcatcgcgc gtcacgaaat tgttgtagat
     1801 cggattgttg ttcgtgccgt cgccgggcca cttgagcagc gcgttatcag cgttcgaggc
     1861 aaagacgccc gcagcgatcg ccgcggcagc ctgggcctgc gcggttgccg gatccacctt
     1921 cgacaggcgc agtgcgtaac gcaggcgcaa cgagttggcg aacttcttcc acttggtcgc
     1981 gtcgccgttg tagatgagat cggcggttcc gtaagtcgca ccgccgggca cactgatgtc
     2041 actcgccgtc ttgaggtcgg cgagtattcc ggtatagatg tccttctgcg cgtcgtactg
     2101 cggcggcgac gaagggtcgg acttgttggc ttgcgagtac ggaatgtcgc cccagatgtc
     2161 agtcatgata ccgaacgtcc acgacttcat cacgagcgcc ggcgcgacga tgttggcgct
     2221 gtcggccttg ctcgtctgag cgagaatggt cgcaagatcc tggagaccac cagcgtagaa
     2281 tccggaccag tatccgttga tgttatccgg ccggatcgag taggtgtcct cgtcagtgaa
     2341 acgatccatc gcaatgtgct gcgcccagag cgacgtgagc gtcagatcga agcttccacc
     2401 gcgcgctcgt ccaaccacgt cgctgacggc ggttggaaag aggaactgcg cggttacact
     2461 cccgggcgcg ttcggattct tgttgatccc ggtgagatcg ttgttgttgc atccacttgc
     2521 caggagtgca acggcaaggg cggaagtcac gccgattgtt gttgagagtc tcatatgctc
     2581 atctcattct gtgggtattg ggtggcgatc atggcgtgac gttgacggaa aagcccatgc
     2641 tcttcgtgga taggacaccg atgaactcga ttccctggac gttcctgttg tcgaacgccg
     2701 tctcgggatc gatgttgggg gctgcagcgt gcagccagag attccgtcca acgaacgcca
     2761 cgttcatggc cgagacacgg aatcggcttg ccactgattg cggcacttcg tagttgagcc
     2821 tgacttcacg cagcttggtg aaggtggcac tcacgatgtt ggcttcgtgg ttctggaaca
     2881 gcgagttgaa ataggcctgc gacgtgacct tggtggtgtt cggacttccg tccgcattga
     2941 caccatccac gatcagtcca ccgccgtcgg cgagcgtctc ggcggtctcg cgtccgagca
     3001 gcgacgactt gagcactccg gattcctcgc cgaacatctt cgtcgtgctg aagatctgac
     3061 caccctgctt ggtgtcgaag aggaagctga agtcccagtg gccatagtgg aacttgttct
     3121 gcaatccgcc gatccagtct ggcgagtagt gtcccagcac acgctgcgtg ggatcgatct
     3181 gcggcaggcc gttgagcgtg accagctggc cctgtgcatt gcgcagatac ggattgccgt
     3241 acagtgtgcc gtacggctgg ttcgcgcgag cctcgacgct gagtccccag taggcgccga
     3301 gtacgactgt ctgcaggccc ttgtagaggc ttacgacttc actgcgattt ctcgcgtagt
     3361 tcgcagtaac gtcccactgg aagctgccgt gcttgatggg tgtgacgttg agctgccctt
     3421 ctattccatg attgcgcagc gagccggcgt tgacgaccgc cgaggtgtag ccgatcgtcg
     3481 acgtgatctg cgccggaatg atctggtcgc tcgtgagctt gttgtagtac gatccatcaa
     3541 acgagacgcg gtcattgaga aagcgcagct cggcgccggt ctcccacgag cgtgtgcgct
     3601 cgggcttgag gttcgcgttc ggaatctggt cgggcacggt gaagcgcggg accgatccga
     3661 atggagtgcc gggagagtac gtcacggcaa gctgatacgg atcggcatcg ttgccgacct
     3721 gcgcccagct ggcgcgcaac tttccatacg agagcaatcc gccgagatga agcgcgggaa
     3781 cggcgtcagt gaagacgaag ctgcccgaca cggacggata gaagtacgag ttgtttccct
     3841 gcggcagcgt cgatgaccag tcgttgcggc cggtcgcgtc gaggaacagg taattgtccc
     3901 aggagaactg cgcctggccg tagaggctgt tcgtctgccg ctgcgatgca aacgacgaca
     3961 cctgtggcgt caccgccgag ttgccgatgt tgaaggtgcc ggggattaca aggtgcggcg
     4021 tgccatcgtt gtagttgctg gatgcgttgt cgcgacgatt gccgccgagg ttgaacgtca
     4081 taccgagctt gcccacgggc ttcttgtccg cggtgagcag gaagtcgctg ttggtctcgc
     4141 gaacgaagag gttctgctcg aagaacgcgc cgccagcgta gtccacaccg atgttgccgt
     4201 tggcgtattc ctgcttgcgc cagtcgcggt gccagtcggt tcccgttctg accataccag
     4261 tcaaccagtc gttgaacttg tacgtcacgt cgccggagcc gatcacacgg tcgcgcgtgt
     4321 cagcattggg atcggcgtac acatcccagt agggattgtt ggtcgtcgtg tggttcgggc
     4381 cgttctgtgt accgtcagga ttgatgtaat tcttcatgtg cggcaggtcg cgctggcgac
     4441 cgccccagat catgaggttg aagatcgcgc tgtttgcgtt gtaacccgtc tgcggacgat
     4501 tctggttgtc gtcctggatg tactgaacgt tggcgcgcgt gctgagcttc gaggttatct
     4561 gcgcaccgcc gttcatgctg aggttgagcc gtcgcagcgt gttggtcgga tagatcgact
     4621 tcacgtccag gtcggtcgcg ctgatgcgga cgtcggagcg tggtccggcg gcggtaaccg
     4681 caacgttggt cgtggaggtg cggccggtat tgaagaagtc cgacacgttg ttcggcgccg
     4741 gtacccaggg ctcgggaacg ccgttgctcc accactgcac gatcgggcgc ccgtccatct
     4801 tgggacccca gctgcggttg acgttgtcgc ttattccgcc gcccttgccg tccttgtacg
     4861 cgaactgtcc gccggaaccc tgcccgtaga cgttctggaa ttccggcagt cgcagcggcg
     4921 tttcaaaggt gagattctga ctgagcttga cacccatacc cttggtgccc ttgccggtct
     4981 tggtcgtgat cacgatcgcg ccgttggccg cgcgtgcacc gtatagtgct gccgcgttgg
     5041 caccggcaag aacgctgatc gattcgatgt cgtccggatt gatgtccgat gcggcgttgc
     5101 cgaagtcgaa tccgccaaag ccgctgttgg tgctggctga gttatcgatc ggaataccgt
     5161 cgacaacgaa gagcggctgg ttgttccctg taatggagtt ctcgccgcgg atcacgatgc
     5221 gcgaagatcc gcctggcggt ccgtcgttcg tgatctcgac gccgggcacc ttgccagcga
     5281 gcgcgttgac gatgttgggc tcgcgtgcag cggtgagctc gctcgcattg atgctcgtct
     5341 gtgcgacgcc gagcgatcgc ttgtcgcgct cgatgccgag cgcggttact acgacgcctt
     5401 cgagagctgt ggtcgtcgcg gtcagcgtga agtcgtgggt attggttccc gcggtgagaa
     5461 cgaccgatgc ggtttcgatc ttgtatccga tgcgtcgcgc gctgagcgtg acggcctttc
     5521 cggtgatccg atccgcggga acggtgaacg agtaatgtcc gtcctccccc gtcgtggatc
     5581 caatgttcat tccagtgaca aagacgctgg cacctgggag cggcgcaccg ccctgagctg
     5641 tcacgcgtcc ggtgacctgc gcgctaccct gagcgtgtga ccagctcggc aatagcgaca
     5701 gagcaccgat gaccacggtg gtgagtcgaa cgagacgtcc catccttttt ctcctttgcg
     5761 gcctggtatt gggaaaatcc tgcgaatccc aaacagattt tctttccaag ggataaagta
     5821 tccagagtgc gtctattgac aagctggaac cggtaaacgg tcacatttgg ggggtgagcg
     5881 gcgtattcac gctcaaaaaa atgccggagc cgggggcgct ggccgaggtg ggggggttca
     5941 gttggtcgtc attcccgctg tagggcgcgg gtttatccgc gccttgggaa tccatctacc
     6001 cgtcgtcatt cccgcggaag aacgtcattc ccgcggaaga acgtcattcc cgcggaagaa
     6061 cgtcattccc gcgaaagcgg gaatccatct gcagccgatc aggtttgcgg taccatcgca
     6121 ctcaaagatc gataacatgg attcccgctt tcgcgggaat gacgagactc tgagccagct
     6181 tcattggaat gacgaccgaa catggattcc cgcgttcgcg ggaatga
//
LOCUS       DATIMD010000576         5143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3412721, whole genome shotgun sequence.
ACCESSION   DATIMD010000576 DATIMD010000000
VERSION     DATIMD010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5143
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3412721"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..864)
                     /locus_tag="VLI40_12865"
     CDS             complement(<1..864)
                     /locus_tag="VLI40_12865"
                     /inference="COORDINATES: protein motif:HMM:TIGR01409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HSU98117.1"
                     /translation="MRENHHHAESASTRVSAEFPDSALSAPDAMTRRDFVTLLGATVA
                     LAGLGACVREPAEKILPYVHGSPDAIPGAALHFATSMTLDGYATGLLVTSHGGRPTKI
                     EGNPDHPASLGAAGVFEQASVLQLYDPHRARYVQNGRRRGSWRALSEVLSPATLKRSA
                     GARGAGLALLLEPTASPLIATRLARVRDVFPDARTYFHAPLENDGSTRAAIEVLGGPV
                     VAQYDFRNADVVVSLGADFCASGPFHLRFAREFGERRRKTPEKANTLYVVECSPSPTG
                     TLADFRVAASPA"
     gene            complement(871..1521)
                     /locus_tag="VLI40_12870"
     CDS             complement(871..1521)
                     /locus_tag="VLI40_12870"
                     /inference="COORDINATES: protein motif:HMM:NF025875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HSU98118.1"
                     /translation="MTALFPSWATRAARLILAIGITALVVTPLFAMVWVRTPLARGED
                     LHIAQPVPFDHRVHVNGLRIDCRYCHAGAERGAWAGLPETAKCVSCHTQTWIASSAFA
                     PVRKSIATGRPIPWRRVNELPDFVYFNHAIHVNKGVGCETCHGRIDQMAQVRQATPLT
                     MGWCLGCHVNPGPNLRPLDAVTTMGWTATRSDSATMRTLLADYRVKRLTNCTTCHR"
     gene            complement(1573..4575)
                     /locus_tag="VLI40_12875"
     CDS             complement(1573..4575)
                     /locus_tag="VLI40_12875"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding and (Fe-S)-binding domain-containing
                     protein"
                     /protein_id="HSU98119.1"
                     /translation="MTQLSNAAPTVRRRQPLPTAGPNLPSPPPRPDAVYTKKSGAEIA
                     EIGKALASVVRGEVRFDDGDRALYSTDASNYRQIPVGIVLPRDADDVVAAVAVCREHG
                     VPIVARGGGTDLAGATCNAAVVLDMSKYMNHVLEINWDEKWARVEPGTVLDDLRDQAE
                     QRHLTFGPDPATHSRNTLGGMIGNNSCGMHAQMAGKVEENTLELEILTYDGLRMWVGP
                     ATDAECDAIIAEGGRRGDIYARLRGIRDRYADEIRERFPHIPRLVSGYPLQQLLPECG
                     FNVARALVGTENTCVTVLQAKLRLVHSPPSRTLVVFGFDDIFTAGDQVAFCNAHSPIA
                     LEGIDASMFTYMQDKHMSTAGRKMLPDGNAWLIVEFGGDTEEDADGQARGLMTAFQAT
                     AKPPTMKLFDDEAEEKRLWEIRESGLGSTSKIPHEPDFYPGWEDSAVAPKDVGNYLRD
                     LQKLLNKYGYTASLYGHFGQGCIHCSIDFDLYTAEGIAHWKAFLNDAAHMCTSYGGSL
                     SGEHGDGQARGTLLPIMFGDEIMKAFREFKSIWDPGGMMNPGKVIDAYPVDVNLRWGS
                     HYHPWEPSTHFAFPDDEGNFSYAANRCVGTGKCRKHDSGTMCPSYMVTREERYSTRGR
                     SRLLFEMLEGNPLRNGWRDEPVREALDLCLSCKGCRSECPVNVDMATYKSEFLSHYFD
                     RRLRPVAHYAFGLMYWWARIASHMPQVANFFTQTRGLRSIAKALATMAPERRIPRFAN
                     QTFKAWFRDRPVRNVGKPQVLLWADTWNNHFHPPIAIAAVEVLEAAGFQVTVPDVSLC
                     CGRPLYDYGMLGLAERLLRQILDTLRPQIQAGMCVVGLEPSCVSVFRDELVNLITDDE
                     DAKRLSAHTYLLSEFLAEKSPDFAVPPLHRKVLVSGHCHQKSVLRFDDEITLLKKLGV
                     DYTVIDSGCCGMAGAFGFEKGDHYDVSIQCGGRVLLPAVRAAEKETLIVTSGFSCREQ
                     ISQTTDREALHVAQLLKLALDEEAKRHN"
     gene            complement(4572..>5143)
                     /locus_tag="VLI40_12880"
     CDS             complement(4572..>5143)
                     /locus_tag="VLI40_12880"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HSU98120.1"
                     /translation="RVAAARAAIGPATELFVDANGAYPRKVALAQAERFVASDVSWFE
                     EPVYHLDLVGLRLCRDRAPVTMEISVGEYGYDPADFAQIIGAGATDVLQADASRCEGI
                     TGLMLVDALCEAHNLPLSTHCAPSLHVHPACAAKRVRHVEYFHDHVRIERMFFDGALA
                     PVGGELRPDLSRSGLGLEFKRADAAAYAL"
BASE COUNT          968 a         1699 c         1527 g          949 t
ORIGIN      
        1 ggcgggtgac gccgcgacgc gaaagtccgc gagcgtaccg gttggcgaag gtgagcattc
       61 cactacgtac aacgtgttcg ccttttccgg cgtcttgcgc cgccgctcgc caaactcgcg
      121 agcgaagcga agatggaacg ggcccgacgc gcagaagtcc gccccgagcg acacgacgac
      181 gtcggcattc cgaaaatcat actgcgcgac caccggtccg ccgagcacct cgatcgcggc
      241 gcgcgtcgag ccgtcatttt ccaacggagc gtggaagtac gtgcgcgcat cggggaaaac
      301 gtcgcgcact cgcgcgagcc gcgttgcaat cagcggtgat gcggtcggct ccagcagcag
      361 cgccaatccg gcgccgcgcg ctcctgcact cctcttgagc gtcgcgggcg agagcacctc
      421 tgacaacgcg cgccacgagc cgcgccggcg gccattctgg acgtagcgcg cccggtgcgg
      481 atcgtacaat tgcaacaccg aggcctgctc gaatactccc gctgcgccga gacttgcagg
      541 gtggtccggg tttccctcga ttttggttgg acgaccaccg tggctcgtca cgagcagtcc
      601 ggtcgcgtaa ccatccagcg tcatcgatgt cgcgaaatgc agggcagcac cgggaatcgc
      661 atcaggtgat ccgtgcacgt acggcaggat cttctctgct ggctcacgca cacatgcacc
      721 aagtcccgcc agcgcgactg tagcgccgag caatgttaca aaatcgcggc gagtcatggc
      781 gtccggcgcg ctcagcgccg aatccggaaa ctcggccgaa acgcgcgtcg aagcagattc
      841 agcgtgatga tggttctcgc gcatcgtcgc tcagcggtga caggtggtgc agttggtaag
      901 acgcttcacg cgatagtcgg cgagaagcgt tcgcatcgtc gcactgtccg acctggttgc
      961 ggtccacccc atcgtagtga cggcgtcgag tggccggagg ttcggtcccg gattaacgtg
     1021 acagccgaga caccatccca ttgtgagcgg cgtcgcctgc ctcacctggg ccatctgatc
     1081 gatcctgccg tgacatgtct cgcaacccac acccttgttg acatggatcg cgtgattgaa
     1141 gtaaacgaag tcaggcagct cgttcacgcg ccgccacggg atcggacgcc ccgtcgcaat
     1201 gctcttgcgc accggcgcaa acgcactgct cgcaatccac gtctgcgtgt gacacgacac
     1261 gcacttggct gtctccggta gtcctgccca cgcaccacgc tccgcccctg catggcaata
     1321 gcggcaatcg attcgcaatc cattcacgtg cacgcgatgg tcgaacggga ccggctgagc
     1381 gatatgcaga tcctccccac gcgcgagtgg cgtgcgaacc cataccatgg cgaacagtgg
     1441 cgtcacaacg agcgcggtga tcccgatagc gagaatgaga cgcgccgctc gtgtggccca
     1501 cgaaggaaag agggcagtca tcgcctgcgc ggtgtgtgga gtgcaacgtg ccgatcaggg
     1561 tggcagggtg catcaattat gccgcttggc ctcctcgtct agcgccaatt tgagaagctg
     1621 cgcgacgtgc agcgcttcgc ggtccgtggt ctgggatatc tgctcacgac agctgaatcc
     1681 actggtcact atcagcgtct ctttctccgc cgcgcgtacc gccggcaaca gcacccgccc
     1741 gccgcactgt atcgaaacgt cgtagtgatc gcccttctcg aatccgaatg caccggccat
     1801 gccgcaacag cccgagtcga tcactgtgta atcgacaccg agcttcttga ggagcgtgat
     1861 ctcgtcatcg aagcgcagca ctgatttctg atgacagtgc ccactcacca acacctttcg
     1921 atgcaagggc gggaccgcga aatcgggcga cttctctgcg aggaattcac tgagcagata
     1981 tgtatgcgcg gagagccgct ttgcatcctc atcgtcggtg atgaggttca caagctcatc
     2041 cctgaacacc gacacgcagc tcggctccag tcccacaacg cacataccgg cctgaatctg
     2101 cggtcgcaat gtgtccagta tctgtcgcag aagccgctcc gccagaccga gcattccata
     2161 atcgtagagc ggccgtccgc agcacagaga tacgtcgggt accgttacct ggaatcctgc
     2221 ggcctccagc acttcgaccg ccgcaatcgc gatcggcgga tgaaagtgat tgttccacgt
     2281 atcggcccac agcagtacct gcggttttcc cacgttccga accggacgat ccctgaacca
     2341 ggccttgaac gtttgattcg cgaagcgtgg aattctccgc tccggcgcca tcgtcgcgag
     2401 cgccttggcg atgctgcgca agcctcgcgt ctgtgtgaag aaattggcaa cctgcggcat
     2461 gtgcgacgcg atgcgcgccc accagtacat gagtccgaac gcgtagtgcg caaccggtcg
     2521 caaacgcctg tcgaagtagt gcgagaggaa ctccgacttg tacgtggcca tgtcgacgtt
     2581 gacggggcac tcgctccggc aacccttgca ggacagacac agatccagcg cctccctcac
     2641 cggctcgtcg cgccagccat tccggagcgg gttgccctcg agcatctcga acaacagccg
     2701 tgaccgtccg cgcgtcgaat atctctcctc gcgcgtcacc atgtagctcg gacacatggt
     2761 gccgctatca tgcttccggc acttgcccgt cccgacgcat cggttggcgg cgtacgagaa
     2821 gtttccttca tcgtcgggaa aggcgaaatg cgtgctgggc tcccacggat ggtagtgcga
     2881 gccccagcgc aggttcacgt ccaccggata tgcatcgatg acctttccgg ggttcatcat
     2941 cccgccggga tcccagatcg acttgaattc gcggaaggcc ttcatgatct cgtcgccgaa
     3001 catgatcggg agcagcgttc ctcgtgcctg gccgtcaccg tgctcccccg aaagcgagcc
     3061 gccgtacgac gtgcacatgt gcgctgcatc gttgagaaac gccttccagt gcgcgatccc
     3121 ttccgcggtg tagaggtcga aatcgatgct gcagtggatg cagccctggc caaagtgccc
     3181 gtacagcgac gccgtatacc cgtacttgtt gagcaacttc tgaagatcgc gcagatagtt
     3241 gccaacgtcc ttgggcgcca ccgcggaatc ctcccatccg ggatagaaat ccggctcgtg
     3301 cggaatcttg gaagtggacc ccagtccgga ttcgcgaatt tcccagagcc gtttctcctc
     3361 ggcctcgtca tcgaacagct tcatcgtcgg cggctttgcg gtcgcctgga acgctgtcat
     3421 caagccgcgc gcctgtccgt cagcgtcttc ctcggtatcg ccgccgaact cgacaatgag
     3481 ccaggcattg ccgtccggaa gcatcttgcg tccggccgtg gacatgtgct tgtcctgcat
     3541 gtacgtgaac atgctggcgt ctatcccttc cagcgcgatc ggcgagtgcg cattgcagaa
     3601 cgccacctga tcgccggcag taaaaatgtc gtcgaagccg aacactacca gcgtgcggga
     3661 aggagggctg tgtaccagcc ggagcttggc ctgcagcact gtcacgcacg tgttctcggt
     3721 gccgacgaga gcgcgcgcaa cattgaaacc gcactcggga agcagttgct gcagtggata
     3781 gcccgacacg agacgcggaa tgtgcgggaa tcgctcgcga atctcgtccg cgtaccgatc
     3841 gcgaatgcca cgcagcctcg catatatgtc gccgcgcctc ccgccctccg cgattatcgc
     3901 atcgcactcg gcgtcggtcg ccggcccgac ccacatgcgt aatccgtcgt aggtgaggat
     3961 ctcgagctcg agcgtgttct cctcgacctt gccagccatc tgcgcgtgca tgccacagga
     4021 gttgtttccg atcatgccac ccagcgtatt gcgactgtgt gtagccggat ccggcccgaa
     4081 tgtgagatgc cgctgttccg cctggtcgcg cagatcatcg agtactgtcc caggctcgac
     4141 acgtgcccac ttctcgtccc aattgatctc gagcacgtga ttcatgtact tgctcatgtc
     4201 gagcactacg gcggcattgc acgtcgcacc cgcaagatcg gtcccgccgc cgcgcgcaac
     4261 tatcgggacg ccgtgctctc tgcatacggc gaccgccgcg acgacatcat ccgcgtcccg
     4321 cggcaatacg atgcccactg gtatctgtcg atagttcgat gcgtcagtcg agtaaagtgc
     4381 gcgatcgccg tcgtcgaacc gtacctcgcc gcgcacgacc gaggccagcg ccttgccgat
     4441 ctccgcgatc tccgctccgg acttcttcgt gtacaccgcg tccggccgcg gcggtggaga
     4501 cggaaggttc ggtccggcgg tcgggagcgg ctgccgccgg cgaacggttg gagcggcgtt
     4561 gctgagctgg gtcacagcgc gtacgccgct gcatcggcgc gcttgaattc caggccaagg
     4621 cccgatcgcg aaagatcggg gcgaagctcg ccgccaacgg gcgcgagcgc gccgtcgaag
     4681 aacatccgct cgatccgaac gtggtcgtga aagtactcca catgccgcac acgcttcgcc
     4741 gcgcacgcgg gatgtacgtg cagcgatggt gcgcagtgag tcgacaacgg gaggttgtgc
     4801 gcctcgcaga gcgcgtccac cagcatcaat cccgtaattc cctcgcagcg cgacgcgtcc
     4861 gcctgcagca cgtccgtcgc gccggctccg atgatctgcg cgaagtccgc cggatcgtag
     4921 ccgtactcac ccactgagat ttccatcgtg accggcgccc ggtcgcgaca gaggcgcaat
     4981 cccaccaggt cgaggtgata caccggctct tcaaaccacg acacgtccga ggcgacgaag
     5041 cgctcggctt gcgccagcgc gacttttcgc ggataggcgc cattggcgtc cacgaacaac
     5101 tccgtggcag gaccgattgc cgcgcgcgca gcagcgactc gcc
//
LOCUS       DATIMD010000577         6960 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4861510, whole genome shotgun sequence.
ACCESSION   DATIMD010000577 DATIMD010000000
VERSION     DATIMD010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6960
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4861510"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3101
                     /gene="rpoC"
                     /locus_tag="VLI40_12885"
     CDS             <1..3101
                     /gene="rpoC"
                     /locus_tag="VLI40_12885"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HSU98121.1"
                     /translation="VKRAKKIVEKESPEVYEILEEIIRDHPVMLNRAPTLHRLGIQAF
                     EPVLVEGKAIRIHPLVCAAFNADFDGDQMAVHVPLSFEAQLECRLLMLSSNNILKPSD
                     GRPVAEPSQDIVLGCYFATKAPPNFENIRDTAKTFSNISEVEMAMSRARVGYSTPILY
                     WVDDRDGARWEYTTAGRAMFNAIVPPELGFQNKDMKKKALGELVFQSYRQAGLSTTVQ
                     LLDRLKEFGFRNATRGGVSIGIEDLHIPTEKETLLREAEQRVERFERAYQTGNITNGE
                     RYNKVIDTWTHANNDVADAMVKAMRESHQGFNPVFMMFDSGSRGSRDQIRQLAGMRGL
                     MAKPQKKLTGGIGEIIESPIKSNFREGLSVLEYFISTHGARKGLADTALKTADAGYLT
                     RRLVDVAQDVTITEEDCGTVHGLEVGALKEGEDVIEPLSERIVGTVAAEDVFDPQERD
                     ASNRATLLVEAGQLISEETARAIEDSGLETVRIRSVLTCEAKRGLCQMCYGRNLATMG
                     MVDKGEAVGIIAAQSIGEPGTQLTLRTFHIGGTAARIAEQTARKSKVSGVVEYGDRLV
                     TVTNTEGGKIVTSYEGELTIRASGDRSTGVGARLQVPLGATMMVKDGDEVKKDQVIFT
                     WDPYTTPIIADVEGAVRFVDLVEEESVSEELDELTGLRQRVVIEDREKKLHPHIEIWS
                     VKGGKDQRVRDFVIPVGAQLIINDGDQVTPGTIIAKISREAYKTRDITGGLPRVAELF
                     EARKPKDPATISEIDGVVRFGDIKRGKREIFVQPMRVENGVSVTDDAVEAQVYEVAAG
                     KHLRVHEGDRVRAGDRLSEGPVNPHDILRIKGPRAVQEYLLNEVQEVYRLQGVKISDK
                     HIGVIVRQMLQKERVLDSGETEYLEAEHVDRTMFRETNARAEKKGKKPATSEPLLLGI
                     TKASLTTQSFISAASFQETTRVLTDAAIRGAKDDLMGLKENIIIGHLIPAGTGVYRYQ
                     EVDIEGVSVPAPIVEEPPEPTMEEILAAGDEDEDFRPGKAGAAAGAASPPGIAKLLGE
                     LE"
     gene            complement(3158..4651)
                     /locus_tag="VLI40_12890"
     CDS             complement(3158..4651)
                     /locus_tag="VLI40_12890"
                     /inference="COORDINATES: protein motif:HMM:NF003715.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium/proton antiporter"
                     /protein_id="HSU98122.1"
                     /translation="MNAPIAIAAILATVGILLGGSVLLTRLTGRIGIPIALGFIAVGL
                     LAGSEGIGHIAFENYSFAFRAGVVALVLILFDGGLNTPPSSLRPVAAPALLLATVGVV
                     ATAGILAVFAHFAGGLDWPIACLIGSVVSSTDAAAVFATLRGSGTSLKSRVGRLLEAE
                     SGLNDPVAIILTLSLTTFVLYRTIENGGSVWMLPFAAAFEIVVGGIAGWLAGTLAKRL
                     ITQVRLESAGLYPVLTLAIAITVFGVTTLLHGSGFMAVYVAGVVIAGAAQLPHRPAIL
                     RVHDAFAWLAQIGMFLVLGLLAFPTRLAAAALPGLGLALVLTLIARPVAVALCLAPFR
                     YSFRETMFIGIVGLRGAVPVVLATIPVMAGITGGRRIFDVVFFIVVLNTLMPGTIVAW
                     LARKLGVAGATPPEAAATIVIESSEPMRSSLRSYFVDKALPVCGVRLSEIPFPDGAAV
                     TMIVRGAALLVAEGSTELHAGDHVYVLASPEADPMVQLLFGRPETLE"
     gene            complement(4743..4988)
                     /locus_tag="VLI40_12895"
     CDS             complement(4743..4988)
                     /locus_tag="VLI40_12895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98123.1"
                     /translation="MPENTYPAVDRRANNAQPVQQRWFRREPGLVVVLIGLGVMLLAL
                     LLPQEHRTFAFYPAVVIVVIGTLITLRHGPDQHRDFQ"
     gene            complement(5040..5456)
                     /locus_tag="VLI40_12900"
     CDS             complement(5040..5456)
                     /locus_tag="VLI40_12900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98124.1"
                     /translation="MRRLITLLLCLLTASGARSGFAVASQNAPTHGHTSVFAAAGLAA
                     DTSHEVPAADPAWTAPAPVVIAPVTRGVAPHAVGRHGAPVAALALVVSELETARGRSA
                     VAHHARLPLLRRGYHATGPPKSVDMSPFTNSLARPA"
     gene            5599..6006
                     /gene="rpsL"
                     /locus_tag="VLI40_12905"
     CDS             5599..6006
                     /gene="rpsL"
                     /locus_tag="VLI40_12905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HSU98125.1"
                     /translation="MPTINQLVRQSRSDVAKKEKAPALKSNPQKRGVCTRVYTTTPKK
                     PNSALRKVARVRLTNGFEVTAYIPGEGHNLQEHSIVLIRGGRVKDLPGVRYHIVRGTL
                     DASGVNGRNRSRSKYGTKKPKAGGKAAPTKGKK"
     gene            6007..6477
                     /gene="rpsG"
                     /locus_tag="VLI40_12910"
     CDS             6007..6477
                     /gene="rpsG"
                     /locus_tag="VLI40_12910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013054923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HSU98126.1"
                     /translation="MSRRKKSVKRTILPDSRYDSQTVAKFINVMMYQGKKSTAERIFN
                     DAMDSVEAKTAQPGVTVFKQAIANLKPMVEVKSRRVGGATYQVPVEVRPERRTALAMR
                     WLILYSRGRNEKSMADKLAAEVIAASKGEGNAVKKKEDTHRMAEANKAFAHYRW"
     gene            6714..>6960
                     /locus_tag="VLI40_12915"
     CDS             6714..>6960
                     /locus_tag="VLI40_12915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98127.1"
                     /translation="MSVLIPAPRAYRPPPIKHVFIIVLENEPFETTFGADTPIPYLAD
                     SMTKAGAFLRQYYGTGHLSLDNYITMISGLAPNPATQA"
BASE COUNT         1491 a         2068 c         2236 g         1165 t
ORIGIN      
        1 cggtcaagcg cgccaagaag atcgtggaga aggaatcgcc cgaggtgtac gagatcctcg
       61 aggagatcat ccgcgaccat ccggtgatgc tgaaccgtgc gccgacgctt caccgacttg
      121 gcatccaggc tttcgagccg gtgctggtcg agggcaaggc gatccgtatt cacccgctcg
      181 tctgcgccgc gttcaacgcg gacttcgacg gcgatcagat ggcagtgcac gtgccgctct
      241 cgttcgaggc gcagctcgag tgccgtctgc tcatgctttc gagcaacaac attctcaagc
      301 cgtccgacgg acgcccggtt gcagagccca gccaggacat cgtgctcggc tgctacttcg
      361 cgaccaaggc accgcccaac ttcgagaaca ttcgcgacac cgcgaagaca ttctcgaaca
      421 tctcggaagt cgagatggcg atgtcgcgtg cgcgtgtcgg atacagcacg ccgatcctgt
      481 attgggtcga cgacagggac ggcgcacgct gggagtacac gacggcaggt cgcgcgatgt
      541 tcaacgcgat cgtaccgcct gagctcggct tccagaacaa ggacatgaag aagaaggctc
      601 tgggcgagct tgtcttccag tcgtaccgtc aggccgggct gagcacaacc gtgcaactgc
      661 tcgaccgtct caaggagttc ggtttccgca acgcaacgcg tggcggtgta tcgatcggta
      721 tcgaagatct gcacattccg accgagaagg agacgttgct gcgcgaagcc gagcagcgcg
      781 tcgagcggtt cgagcgtgca tatcagactg gtaacatcac gaacggcgag cgctacaata
      841 aggtcatcga cacctggacg cacgcgaaca acgatgtcgc ggacgcgatg gtgaaggcga
      901 tgcgcgagtc acatcagggc ttcaaccctg tgttcatgat gttcgattcc ggctcgcgcg
      961 gttcgcgtga ccagatccgt cagctcgccg gtatgcgcgg actgatggcc aagccgcaga
     1021 agaagctgac aggcggaatc ggcgagatca tcgaaagccc gatcaagtcc aacttccgtg
     1081 aaggactgtc ggtgctcgag tacttcatct cgacccacgg tgcacgcaag ggactggcgg
     1141 atacggcact caagaccgcg gacgccggat acctcacccg tcgtctggtg gacgtcgcgc
     1201 aggatgtgac gatcaccgaa gaggattgcg gaaccgtgca tggactcgaa gtcggcgcgc
     1261 tgaaggaagg cgaggacgtc atcgagccgc tgtcggagcg catcgtcgga accgttgcgg
     1321 ccgaggacgt gttcgatccg caggagcgtg acgcgagcaa tcgcgcgacg ctgctcgtcg
     1381 aagcgggtca gctgatcagt gaggaaacag cgcgtgcgat cgaggattcc ggactggaga
     1441 ccgtcaggat tcgctcggta ctcacgtgtg aggcgaagcg tggtctgtgc cagatgtgtt
     1501 acggccgcaa cctcgccacc atgggtatgg tggacaaggg cgaggccgtc ggcatcatcg
     1561 cggcgcagtc gatcggcgag ccgggcacgc agctcacgct gcgcacgttc cacatcggtg
     1621 gaacggcggc acgtatcgcc gagcagacgg cacgcaagag caaggtgtcg ggcgtcgtcg
     1681 agtatggcga tcgcctcgtc acagtgacga ataccgaggg cggcaagatc gtcacatcgt
     1741 acgaaggcga gctgaccatt cgcgcatcgg gcgatcgctc gacgggtgtt ggcgcgcgtc
     1801 ttcaggtgcc gcttggcgcc acgatgatgg tgaaggatgg cgacgaggtg aagaaggacc
     1861 aggtgatctt tacctgggat ccgtacacca cgccaatcat cgccgacgtc gaaggtgcag
     1921 tgcggttcgt cgatctcgtt gaagaggagt cggtgtccga ggagctcgac gagctcaccg
     1981 gtctgcgcca gcgcgtcgtc atcgaggatc gcgagaagaa gctgcatccg cacatcgaga
     2041 tctggagcgt caagggcggc aaggatcagc gcgtccgcga cttcgtgatc ccggttggcg
     2101 cgcagctgat catcaacgat ggcgatcagg tcacgcctgg tacgatcatc gccaagatca
     2161 gccgtgaagc gtacaagact cgcgacatca cgggcggtct gccgcgtgtc gcggaattgt
     2221 tcgaagcacg caagcccaag gatcccgcca cgatctccga gatcgacggt gtggttcgct
     2281 tcggtgacat caagcgcggc aagcgcgaga tcttcgtgca gccaatgcgc gtcgagaacg
     2341 gcgtctcggt aacggacgac gcagtcgagg cgcaggtgta cgaggtcgcg gcaggcaagc
     2401 acctgcgtgt gcacgagggt gaccgagtgc gcgccggtga tcgtctgtcc gaaggtccgg
     2461 tcaatccgca cgacattctg cggatcaagg gaccgcgcgc ggtgcaggaa tatctgctga
     2521 acgaagtgca ggaagtgtat cgcctgcagg gcgtgaagat cagcgacaag cacatcggcg
     2581 tgatcgtgcg ccagatgctg cagaaggagc gtgtgctcga ttccggagag acggaatatc
     2641 tggaagcaga gcatgtcgac cggacgatgt tccgcgagac gaacgcgcgt gccgagaaga
     2701 aggggaagaa gccggccacg tcggagcctc tgctgcttgg tatcacgaag gcgtcgttga
     2761 cgacccagtc gttcatctcc gccgcttcgt tccaggagac gacccgagtg ctgacggatg
     2821 cagctatccg cggtgcgaag gacgatctca tgggcctgaa ggagaacatc atcatcggcc
     2881 acctgattcc ggccggtact ggtgtatatc gctatcagga agtggacatc gaaggagtgt
     2941 cggtgccggc tccgatcgtc gaggagccgc ccgagccaac gatggaagag attctcgccg
     3001 caggtgacga ggacgaggat ttccgtccgg gcaaggctgg agccgcggca ggtgcagcga
     3061 gtcctccggg aatcgcgaag ctgctgggcg agctcgagta acagcgcagt acaggtagtg
     3121 caaaaggcgc atccacgttg gatgcgcctt ttgtgtttca ctcaagagtt tccggacgtc
     3181 caaatagcag ctgcaccatc ggatcggcct cgggcgatgc aagcacatac acgtgatcgc
     3241 cagcgtgtaa ttctgtggaa ccttccgcca cgagcaacgc cgcgccgcgc actatcatcg
     3301 taaccgcagc gccatcgggg aatggtattt cggagagacg aactccgcac accggcagcg
     3361 ccttgtcgac aaaataggat cggagcgagc tccgcatggg ctcgctcgat tcaatcacga
     3421 tcgttgcagc cgcctcgggc ggcgttgctc cagcgacacc cagctttcgt gcgagccagg
     3481 cgacgattgt gccgggcatc agcgtgttga gcacgacgat gaagaagacc acatcgaaga
     3541 tgcggcgtcc gccggtgatg ccggccatta cagggattgt ggcaagtaca accggcaccg
     3601 cgccgcgcaa tcccacgatg ccgatgaaca tcgtctcgcg gaacgagtat cggaatggcg
     3661 ccagacagag tgccactgca actggtcgcg caatcagcgt gagcacgagt gcaaggccga
     3721 gtccaggcag cgccgcggcg gcgagacgtg tgggaaacgc gagcagtccg agcaccagga
     3781 acatgcctat ctgcgcgagc catgcgaatg cgtcgtgcac tcgtagaatc gcgggacggt
     3841 gcggcagctg agctgcgcct gcgatcacta cacccgcaac gtaaaccgcc atgaacccgc
     3901 taccgtggag cagcgtcgtt accccgaaca ccgtgatcgc gatcgcgagc gtcagaaccg
     3961 gatagagacc tgcggattcc agtcgcacct gggtgatcaa gcgcttcgcc agagttcccg
     4021 cgagccatcc tgcgatcccg ccaacgacga tctcgaacgc cgcagcgaac ggaagcatcc
     4081 agacgctccc gccattctcg atcgtgcgat aaagcacgaa ggtcgtgagc gagagcgtga
     4141 gtatgatcgc gaccggatcg ttgagtccgg attccgcttc cagcaatcgg ccgacgcgcg
     4201 acttgagcga tgttccactt ccacgcagag tcgcgaacac tgccgctgca tcggtcgatg
     4261 agacgactga tccgatgagg caagcgatcg gccagtcgag cccgccggcg aagtgcgcaa
     4321 aaacggcaag tattccagct gttgcaacaa cgccgacagt cgcgagcaga agcgctggag
     4381 cagcaaccgg gcgcagcgac gatggcggcg tattgagacc gccatcgaag agaatgagta
     4441 ccagcgcgac cacgcccgcg cggaaggcga agctgtagtt ctcgaacgcg atgtggccga
     4501 tcccttcgga gccggccagc aatcccaccg cgatgaagcc gagtgcgatg ggaatgccga
     4561 tgcgtcctgt gaggcgggtc aggaggacgg agccaccgag cagtatgcct accgtcgcga
     4621 gtatggcggc gatcgcgatc ggtgcgttca ccggagttgc gccacgggcg gacgccgtcc
     4681 cgcgcgggct acatcacgca aggacgacgt ccgccgctcc ggcaaagctc agcgccaatt
     4741 gatcattgga aatcccggtg ctggtctgga ccatggcgca gggtgataag tgtgccgatc
     4801 acgacgatca cgacggcggg gtagaatgcg aaggtgcggt gttcctgcgg aagcagaagt
     4861 gcaagaagca tcacaccaag gccaatgagc acgacgacga gtcctggctc gcgccggaac
     4921 cagcgttgct gaacgggttg agcattattt gctcggcggt cgaccgccgg atatgtattt
     4981 tctggcatgt tgggattgac gagtaggggg cgcaagaccc cctccgtcga tcccgacggt
     5041 caggcaggcc gcgccaatga attcgtgaaa ggcgacatgt cgacgctctt tggtggtccc
     5101 gtcgcgtgat atccgcgtct gagaagtggg agacgggcgt ggtgcgcgac ggcagatcgc
     5161 ccgcgcgccg tctccagctc ggacacgacc agagcgagcg cagccaccgg cgcgccgtgc
     5221 cgcccaaccg catgcggggc gaccccgcga gtgaccggag caatgaccac aggcgctggc
     5281 gcggtccagg cgggatccgc tgccggaacc tcatggctgg tgtcagccgc gagaccagcc
     5341 gccgcgaata cagatgtgtg cccatgcgtc ggcgcattct ggctcgctac cgcgaagccg
     5401 gagcgagctc cggacgcggt gaggagacac agaagaaggg ttatcaagcg ccgcatgatt
     5461 ccttcaattt aaccagctag gccaggtatc acgaatccgc atggcaccaa tgggttgctg
     5521 tgcggccctc tgccgtctag attatccagg ctgtggccac tccgttgtgg agggcctttc
     5581 cttgtcgatc catggtaaat gccgacaatc aatcagctgg tccgccagag ccgcagcgat
     5641 gtggccaaga aggaaaaggc gccagcgctc aagtccaatc cccagaagcg tggcgtgtgc
     5701 actcgcgtgt acacaaccac tcccaagaag cctaactccg cgctccgcaa ggtcgcgcgt
     5761 gttcgtctca cgaacggctt cgaagtcacc gcatacatcc ccggcgaggg acacaacctg
     5821 caggagcact cgatcgtgct cattcgcggt ggtcgtgtga aggatctccc cggtgttcgt
     5881 tatcacatcg ttcgcggcac tctcgacgcc tccggcgtga acggccgcaa ccgtagccgt
     5941 tccaagtacg gaaccaagaa gccgaaggcc ggcggaaagg ccgcaccgac caaggggaag
     6001 aagtaaatga gccgtcgcaa aaagtcagtc aagcgcacca tccttccgga ttcgcgctat
     6061 gacagccaga ccgtggcgaa gttcatcaac gtcatgatgt atcagggcaa gaagagcacg
     6121 gccgagcgca tcttcaacga cgcgatggac agcgtcgagg caaagaccgc gcagccaggt
     6181 gtcaccgtct tcaagcaggc gatcgccaat ctcaagccga tggtcgaggt gaagagtcgg
     6241 cgcgtcggcg gcgccacgta ccaggtgccg gtcgaagtcc gtccagagcg ccgtactgca
     6301 ctcgcgatgc gctggttgat tctctactca cgcgggcgca acgagaagtc gatggccgac
     6361 aagctcgccg ccgaagtcat cgccgcgagc aagggcgagg gcaacgccgt gaagaagaag
     6421 gaagacacgc acaggatggc tgaagcgaac aaggcgttcg cgcactatcg ctggtagcgg
     6481 tcgtagacgt ctacaaatga aaccccgtgt cgtgagtgat cacgacacgg ggttttgctt
     6541 tgccgcgtca catcattacg gagccgagca gcgctgaagc agcgctcatg cggcgatgcc
     6601 cgtaggttat ggatagacgc cgtccgtcca taacgccgat tccaattcgc catgctcagt
     6661 cgcttatgct cagtcgcttg attcgtaatg ctgtttccgg tggtgcgtgt gcgttgtccg
     6721 tcctcatacc cgcgccacgc gcgtaccgcc cgccgccgat caagcacgtc ttcatcatcg
     6781 tcctcgagaa cgagccattc gagacgacgt tcggcgcgga caccccgatc ccgtacctgg
     6841 ccgacagcat gacgaaggcc ggtgcttttc tccggcaata ttacggaacg gggcacctca
     6901 gcctcgacaa ctacatcacc atgatctccg gtctggcgcc gaatccggcg acacaggccg
//
LOCUS       DATIMD010000578         3647 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3412977, whole genome shotgun sequence.
ACCESSION   DATIMD010000578 DATIMD010000000
VERSION     DATIMD010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3647
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3412977"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..665)
                     /locus_tag="VLI40_12920"
     CDS             complement(<1..665)
                     /locus_tag="VLI40_12920"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682205.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The beta chain is a
                     regulatory subunit; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HSU98128.1"
                     /translation="MTTATETEIHTGKIIQVIGPVLDVEFESEHLPELYNALRIEGTT
                     QSGVPIKVTVEVQQHIGRNQVRAVAMSSTDGVERGMDAIDTGSPITVPVGAPALGRIL
                     NVIGEPVDNGAPIPADAVRWPIHRAPPHFADLEAKTEVFETGIKVVDLIAPFVKGGKI
                     GLFGGAGVGKTVVIQELINNVQKGHGGRSVFCGVGERTREGNDLYAEFKEAGILDSVA
                     LIYG"
     gene            complement(813..1673)
                     /gene="atpG"
                     /locus_tag="VLI40_12925"
     CDS             complement(813..1673)
                     /gene="atpG"
                     /locus_tag="VLI40_12925"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit gamma"
                     /protein_id="HSU98129.1"
                     /translation="MAKGRELKGRIKSVENTRKITRTMEMVATSKMKRAQDRVVGARP
                     YARSLAEVISDLYSPDLAEQFPLLRQPAHVKRAAVLLLTSNRGLAGAFNANLIKEARL
                     LVQRLESEGTQVELHIVGRKGIGFFRYLGRELATARTDITDRPTASDARSLADSLIDN
                     FTNGALDAVHVVYAKFNSALSTPATAEQVLPVSPPQRSGIARDYILAPSADAILTELL
                     PLYVRNSIYRALVETVAGEQSARRTAMKNATDNASDMINVLRRTYNRARQAQITQEIA
                     EIVGGAAALE"
     gene            complement(1712..3289)
                     /gene="atpA"
                     /locus_tag="VLI40_12930"
     CDS             complement(1712..3289)
                     /gene="atpA"
                     /locus_tag="VLI40_12930"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HSU98130.1"
                     /translation="MATDTALRPGEIKDILLREIEAADLNDLKVEEVGTVLEVKDGIA
                     RIYGLSKAMAGEMLNVTSSETGELITALALNLEEDNIGAVILGDYLILKEGDQVRRTG
                     RVLEVPVGPELIGRVVDSLGRPLDERGPINAKHTRKVESEAPGIIVRQPVKEPLQTGL
                     KAVDSMIPIGRGQRELIIGDRGTGKTAIAIDTILNQKGTGVVCVYVAIGQKASTVAAV
                     VDRLRSSGAMDYTIVVVASAADPAPMQYIAPYSGCAMAEYFMYNEGKATLCVYDDLSK
                     QAAAYRQISLVLRRPPGREAYPGDVFYLHSRLLERAAKLSEDKSVVDGTNILAPGGSL
                     TALPIIETQAGDVSAYIPTNVISITDGQIFLEADLFYSGVRPAVNVGISVSRVGGSAQ
                     TKAMKGVAGRLRLDLAQYRELEAFASFASDLDAATKKQLDRGARTVEILKQPQYQPMP
                     VELQVMVIYAVTNGFVDEVPVAEIRDWEKGFLEFMAAQFPQVGDKIRTEKALSKDLEA
                     ELKRAIERYNATRKKPA"
     gene            complement(3335..>3647)
                     /locus_tag="VLI40_12935"
     CDS             complement(3335..>3647)
                     /locus_tag="VLI40_12935"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSU98131.1"
                     /translation="AAVMGVTREHLSRNFARDRGANLKRVIDLVRLISAAELSKNPGY
                     DVRDVAAVLGFASSSHLAVTTQRIASTRPASLSGLRAVDLVDRFVQGRTRSRVAGKGG
                     L"
BASE COUNT          647 a         1132 c         1138 g          730 t
ORIGIN      
        1 ccgtagatga gcgcaacgga atcgagaatt ccagcttcct tgaactccgc gtacaggtcg
       61 tttccttcgc gcgtgcgctc accaacgccg cagaataccg agcggccgcc gtggcccttc
      121 tgcacgttgt tgatgagctc ctgaatgacg acggtcttgc cgacgcctgc accgccgaac
      181 agtccgatct ttccgccctt gacgaacgga gcgatgagat cgacgacctt gataccggtc
      241 tcgaagactt cggtcttggc ttcgagatcg gcgaagtgag gcggtgcacg atggatgggc
      301 cagcgaacag cgtccgccgg aatcggcgcg ccgttgtcga ctggctcgcc gatgacgttg
      361 aggatacggc cgagtgccgg agcaccgacc ggcacggtga tcggcgatcc agtgtcgatc
      421 gcatccatgc cgcgctcgac gccgtcggtc gaagacattg caacggcgcg gacctgattg
      481 cgtccgatgt gctgctgcac ttcgacagtg accttgatcg gaacgccgga ttgcgtcgtg
      541 ccttcgatgc ggagtgcgtt gtacagctca ggcagatgct cggactcgaa ctccacgtct
      601 aggacggggc cgatgacctg gatgatcttg cctgtgtgga tttcggtttc ggttgcggtg
      661 gtcatatggg atccggatac gatttaaaac gcggtggtac gtactacaaa aacatcatca
      721 tgacgccggc gcgggcgacg aatgcatcgc accacgatcg gcccccgtac gggcgacgca
      781 tgcgtcgccc ctaccacggc cgcgacgacg catcattcca acgccgctgc gccgccgacg
      841 atctcggcga tttcctgcgt gatctgtgcc tggcgcgcgc ggttgtacgt gcggcgcagg
      901 acgttgatca tgtcgctcgc attatccgtt gcgttcttca tggccgtacg acgtgcgctc
      961 tgctcacccg cgacggtctc gacgagtgcg cggtagatcg aattgcgtac gtagagcgga
     1021 agcagctcgg tcagaatcgc atcggccgac ggcgcgagga tgtaatcccg cgcgatgccg
     1081 ctgcgctggg gcggcgagac aggaagtacc tgctccgccg tcgctggtgt ggagagcgcc
     1141 gagttgaact tggcgtacac gacatggact gcatcgagtg cgccgttggt gaagttgtcg
     1201 atcagcgagt cggcgaggct gcgagcgtcg ctcgcggtcg gccggtcggt gatgtcggtg
     1261 cgcgcggtcg cgagctcgcg gccaaggtag cggaagaaac cgattccctt gcgccctacg
     1321 atgtgcagct cgacctgcgt tccttccgac tcgagacgct gcaccagcag gcgcgcttcc
     1381 tttatcagat tcgcgttgaa tgcgcccgcg agtccgcggt tggacgtgag cagcagtacc
     1441 gccgcgcgct tcacgtgcgc cggctgacgg agcagcggaa actgctccgc aagatccggt
     1501 gagtacagat ctgaaatcac ctccgcgagc gaccgcgcgt acggccgcgc gccgacaacg
     1561 cgatcctgcg cgcgcttcat cttcgacgtc gcgaccatct ccatcgtgcg cgtgatcttg
     1621 cgcgtgttct caacggattt gatgcggccc ttaagctctc gtcctttcgc catgcgtcgc
     1681 tgttatgact cgatgcggat tgaaccggcg atcaggccgg cttcttccgc gttgcgttgt
     1741 aacgttcgat cgcgcgcttg agctcggctt cgagatcctt tgaaagcgcc ttttccgtgc
     1801 gaatcttgtc gcccacctgc gggaactgcg ccgccatgaa ttcgaggaat cccttctccc
     1861 agtcgcggat ctcggcgacc ggcacttcat ccacgaatcc gttggtcacg gcgtagatca
     1921 ccatcacctg cagctccacc ggcatcggct ggtactgcgg ctgcttcagg atctcgaccg
     1981 ttcgtgctcc gcgatcgagc tgcttcttgg tcgctgcatc gagatcggac gcgaacgacg
     2041 cgaacgcttc gagctcgcgg tactgcgcga gatcgagacg gagacgaccg gcgacgccct
     2101 tcatcgcctt ggtctgtgca gatccaccga cgcgcgatac ggagataccg acgttcaccg
     2161 cgggacgaac gcccgagtag aacagatcgg cttcgaggaa gatctggccg tcggtgatcg
     2221 agataacgtt ggtcgggatg tacgccgaca cgtcaccagc ctgcgtctcg atgatcggaa
     2281 gcgcggtgag cgatccaccg ggcgcgagaa tgttggtccc gtcgactacg ctcttgtcct
     2341 cgctcagctt ggcggcgcgc tcgagcaggc ggctgtgcag atagaacacg tcacctggat
     2401 acgcttcgcg acctggcgga cgacgcagaa cgagcgagat ctgacggtac gcggctgcct
     2461 gcttggacag atcgtcgtac acgcagagcg tcgccttccc ttcgttgtac atgaagtact
     2521 cggccatggc acaacccgag tacggcgcga tgtactgcat tggtgccgga tcagcggcgc
     2581 tcgcgacgac gacgatggtg taatccatcg cgccggagct gcgcagccgg tcgaccacgg
     2641 ccgcaaccgt cgacgccttc tggccgatcg cgacgtagac gcagacgacg cccgttccct
     2701 tctgattcag aatggtatcg atcgcaatcg cagtcttgcc cgttccgcgg tcaccgatga
     2761 tcagctcacg ctgccctcgg ccgatcggga tcatggagtc gacagccttg agacccgtct
     2821 ggagcggctc ctttacaggc tggcggacga taataccggg cgcctcgctc tccaccttgc
     2881 gggtgtgctt ggcgttgatc ggaccgcgct cgtcgagcgg acggccgagc gaatcaacca
     2941 cgcgtccgat gagctcgggc ccgaccggga cttcgagcac gcggccagtg cggcggacct
     3001 gatcgccttc cttgaggatc agatagtcgc ccaggatcac ggcgccgatg ttgtcctctt
     3061 cgaggttcag cgccagggcg gtgatcagct cgccagtttc ggacgaggtg acgttcaaca
     3121 tctcgcccgc catcgccttc gagaggccat agatacgggc aataccgtct ttcacttcga
     3181 ggaccgtgcc tacttcctcg accttgaggt cattgaggtc agcggcttcg atctcacgga
     3241 ggagaatgtc cttgatttcg ccaggacgga gcgcggtgtc agtggccatg atttgagcgg
     3301 ggattttttg cttgtctgga gcttgtgaaa attatcacaa gccccctttt cctgcaactc
     3361 ggcttctggt gcggccctga acgaatcggt ccacgagatc cactgcccgc agaccggaaa
     3421 gggaggctgg tcgggtgctc gcgatcctct gggtggtaac agcgaggtgc gacgaggagg
     3481 caaaacccag taccgccgcc acatcccgca cgtcgtagcc cggattcttg gacagctcgg
     3541 ctgccgaaat gagccggacg aggtcgatga cccgcttgag attggctccc cgatcccggg
     3601 cgaagtttct actcaaatgt tcccgcgtga cacccattac cgccgcg
//
LOCUS       DATIMD010000579         5061 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_528209, whole genome shotgun sequence.
ACCESSION   DATIMD010000579 DATIMD010000000
VERSION     DATIMD010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5061
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_528209"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1371
                     /locus_tag="VLI40_12940"
     CDS             <1..1371
                     /locus_tag="VLI40_12940"
                     /inference="COORDINATES: protein motif:HMM:NF015213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c/FTR1 family iron permease"
                     /protein_id="HSU98132.1"
                     /translation="ASCHGSRGLGDGPTARTLSTAVPAIGSAAATPNLTPTLAYDVAS
                     VGINGTAMPAFGASLTAQQRWDVVNYVYKLRGQPMSLPSQPIVAGTNASSTAASIVAL
                     LDSSLASAQRGNVTAASDGAFDAYLAFEPLETVVRAKDPGLVSSLERSFGNFRVAVRG
                     GDIRAATAARNAITGALPRAVALVNGADESAVTMFWQSFIIILREGFEAILVVGAVVA
                     FLIKTGNRERLRSIWIGAALGVVASAITAVILKTVLAAIPASSEIVEAVSLLVAVVVL
                     FSVSYWLISKVEAHKWQKFIREKVSLALEHGSGGALMLIAFLAVYREGAETALFYQAL
                     FSQAHGVALPLTLGIVVGSVALVIVFVLFYRFGVKIPMRTFFAATSLLLYYMAFVFAG
                     RGIRELQEGNVLSMTPLRHVPDIGWLGLFPTVETVAIQSVLLVLFAFALIKTFVFTTA
                     PLSPRK"
     gene            1476..2879
                     /locus_tag="VLI40_12945"
     CDS             1476..2879
                     /locus_tag="VLI40_12945"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016703 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of one atom of oxygen (internal
                     monooxygenases or internal mixed function oxidases)
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HSU98133.1"
                     /translation="MPPTIIQGGMGVGVSNWTLARAVAQAGHLGVVSGTALDTVLVRR
                     LQDGDLGGHARRAIEHFPIAHVGEDALKRYFLPNGRTDGQPYKMLPMYKQHVSVARQQ
                     ITMLANFVEVYLAREGHDGLVGVNLLTKVQLPNLASLCGAMLAGVDYVLMGAGIPREI
                     PGVLDALSEYRTASMKFDVEGMPAGESEILSFDPAAHGVDQSMPMKRPRFIAIVAATS
                     LAATLARKANGRVDGFVVEGPTAGGHNAPPRGEQQLNARGEPIYGDRDVVDIARIGEL
                     GLPFWIAGGAGSPKGLVDAIIAGAAGIQVGTLFAYCEESGIADVLKKEVLRHAALGDL
                     DVVTDPRASPTGYPFKVVRWAGDNADGPRRQRKCDLGYLRTAFRDADGRIGYRCPAEP
                     VDAYVRKGGALEDTEGRECLCNGLTANIGQAQVRGGGMEEPPLLTSGDDLLSIQTFLG
                     ARTTYTASDVIDYLLGR"
     gene            complement(2799..4748)
                     /locus_tag="VLI40_12950"
     CDS             complement(2799..4748)
                     /locus_tag="VLI40_12950"
                     /inference="COORDINATES: protein motif:HMM:TIGR01525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HSU98134.1"
                     /translation="MNRTRRDGSNARWYGSPAVVPGLATAFVLGGLMAWVLKSPVWAH
                     HIWMAGVVSGGAIIVTGTIRGALRGQWASDVVATLAIVTSVVMNEPLAGLIVVVMQTG
                     GEALERYAEGRASRAVQQLEADRPTSAHVLRAGEIQDIRADEIVVGDSVIVRAGERVP
                     CDGIVEEGRSELDTSMLTGESLPQSIEPGVPVSSGSINGDRLFTMRATAIAQASQYER
                     IVQLVRSALETKAPFQRIADRYAVWFTPTTLVIAVVAVAVSGDYQRFLAVLVVATPCP
                     LILAPPIATIGGINRAARRQIIVRNGAAIERLATANVAVLDKTGTLTVGKPVVRTVTP
                     YPPFSRADVLRLAGTVEQGAAHLLARTLVDAARAENESLPAIRDVVESPGRGVTGTVG
                     ADIVMVGSHGFITERLAVKTGNAIPLDLSVGLKAYVAINGRFAGVVAYDEQLRYDVPA
                     VLDDLKSLGIRRALLLSGDHEDNARAIADSLGITEFRGDMKPDEKVAVVRELTAAGDR
                     VLMVGDGTNDAPALSAATIGIALAGHGGGVTAEAADLVILVDELNRVPEAIRISRRSM
                     KIARESVWAGLGLSGIAMLFAAAGRIAPIPGALLQEVIDVAVILNALRASAGGRSMRS
                     ASQQVIDDVGRRVRGARTEKSLDAQ"
     gene            complement(4760..>5061)
                     /locus_tag="VLI40_12955"
     CDS             complement(4760..>5061)
                     /locus_tag="VLI40_12955"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HSU98135.1"
                     /translation="GKVVVVELNSDAQGNYFKPAKFEVHRGDVIRFTLKSGVHNVHFL
                     PDSNPGKTNLPPASDFLQLPDQTLDVPVNLAPGKYYFQCDPHAALGMQGHVEVEH"
BASE COUNT          926 a         1538 c         1579 g         1018 t
ORIGIN      
        1 gcttcgtgcc acggttcgcg cgggcttggc gacggtccga ctgcccggac tctctcgacc
       61 gccgtgccgg caatcggaag cgcggctgcc acgcccaatc tgacgccgac gctcgcttac
      121 gatgtcgcgt cagtcggcat taacggcacc gccatgcccg cgttcggagc atcgctcacc
      181 gctcagcagc gctgggacgt ggtgaactac gtgtacaaac tgcgcggtca gcccatgtcg
      241 ctcccatcgc agcccatcgt tgcgggaacg aatgccagca gcactgcggc gtcgatagtc
      301 gcgttgctgg acagttcgct tgcatctgca caacgcggaa acgttaccgc ggcaagcgac
      361 ggcgcgttcg acgcttacct tgcattcgag ccactcgaga ccgtcgtgcg cgcgaaggat
      421 cccggactgg tttcatcatt ggagcgctcc ttcggcaatt tcagagtcgc ggtgcgcggc
      481 ggtgacatac gtgccgccac tgccgctcgc aatgcgatca ccggcgcgct gccgcgtgcg
      541 gtagcgctcg tgaacggagc cgatgagagt gccgtaacga tgttctggca atcgttcatc
      601 ataatcctca gggaaggatt cgaggcgata ctcgtcgttg gcgccgtggt tgcgtttctg
      661 atcaagacgg gcaaccgcga gcggttgcgc tccatctgga tcggtgcggc tcttggtgtg
      721 gtggccagcg cgataacagc tgtcatactc aagacggtac tcgccgccat tccagcgagc
      781 agcgaaatcg tggaagcggt atcgctgctg gttgccgtcg tggtgctctt ctccgtcagc
      841 tactggctga tctccaaggt ggaagcacac aaatggcaga agttcatcag agagaaggtg
      901 tcgctggcgc tggagcacgg cagcggcgga gcgttgatgc ttattgcgtt cctcgcggta
      961 taccgcgagg gagcggagac ggctctcttc taccaggccc tgttcagcca ggcgcacggt
     1021 gtggcactgc cactcacgct gggaattgtc gtcggctctg tcgctctggt tatcgtattc
     1081 gtgttgttct atcgtttcgg cgtgaagatt ccgatgcgga cgttctttgc cgcaacgagc
     1141 ctgctgttgt actacatggc gttcgtattc gcgggtcgcg gaattcggga gctgcaggag
     1201 ggcaacgtgc tgtccatgac acctttgcgg catgtgcccg acatcggatg gctcggattg
     1261 tttccgaccg ttgagacagt agcaatccag tcagtattac ttgtattgtt cgcattcgca
     1321 ctgatcaaga ctttcgtgtt tacaacggcg ccactttcac cgcgcaagtg atgatggtcg
     1381 gggaatcctt tacgatattt ccagcttatc ccgactgaat gtgtcggtag tcagccgtag
     1441 gttctcaccg catgactact gtgcagcgtc aaatcatgcc tccgacgatc attcagggcg
     1501 gaatgggggt cggcgtttcg aactggactc tggcacgcgc ggtcgcgcaa gctggtcacc
     1561 ttggtgttgt ctcggggact gcgctcgata cagttctcgt gcggcggctt caggatggag
     1621 acctgggtgg acacgcgcgg agagcgatcg aacattttcc gatcgcccac gtcggtgagg
     1681 acgcactcaa gcgctacttc ctcccgaacg gtcgcacgga tggtcagccg tacaagatgc
     1741 tgcccatgta caagcaacat gtgagcgtcg cacgccagca gattacgatg cttgcgaatt
     1801 tcgtcgaggt atacctggcc agggaaggcc acgacggact ggttggcgtc aatcttctaa
     1861 ccaaggtaca gctgcccaac ctggcgtcgc tgtgcggcgc gatgctcgct ggtgtggatt
     1921 acgtattgat gggcgccgga attccacgcg agattccggg cgtgctggat gcgctctccg
     1981 agtaccgcac cgcgtcgatg aaattcgatg tcgaagggat gccggcaggc gagtccgaga
     2041 ttctcagctt cgatccagcg gctcatggtg tcgatcagtc gatgccaatg aaacggccga
     2101 gattcatcgc catcgtggcg gcgacgtcgc tcgcggcaac acttgccaga aaagcaaacg
     2161 gccgcgtgga tggtttcgtg gtggaaggcc cgactgctgg cggacacaac gcgccgccgc
     2221 gtggcgaaca gcaactcaat gcgcgcggcg agccgatcta cggagatcgc gacgtagtcg
     2281 atatcgcacg catcggtgag ctcggacttc cgttctggat cgccggtggc gctggctcac
     2341 caaagggact cgttgacgcc atcattgcag gtgcggctgg cattcaggtc ggtaccctgt
     2401 tcgcctactg tgaagagtcg ggcatcgctg acgtgctcaa gaaggaggtc ctgcgtcacg
     2461 cagcattggg agatcttgat gtagtgacag atccgcgtgc atcgccaacc ggatatccgt
     2521 tcaaggtggt acgatgggcg ggtgacaatg ctgacggacc gcggcgccaa cgcaagtgcg
     2581 atctcggata tctgcgcacg gcctttcgcg atgcggatgg ccgcatcggg tatcggtgtc
     2641 cggctgagcc ggtggatgcc tacgtcagga agggcggcgc gctggaggac acggagggcc
     2701 gggagtgcct ctgcaacgga ttgacagcga acatcggaca ggcgcaggtg cgcggtggcg
     2761 gaatggagga gccgccgctc ctgacgagcg gcgacgatct attgagcatc cagacttttc
     2821 tcggtgcgcg caccacgtac acggcgtccg acgtcatcga ttacttgctg ggacgctgag
     2881 cgcatcgagc gacccccggc gctggcgcgc agtgcgttga gtatgaccgc gacatcgatc
     2941 acttcctgaa gtagcgcgcc cggaattggc gcgatcctgc cagctgctgc gaacaacatc
     3001 gcgatgccgc tgagcccgag tccggcccag acgctctctc tcgcgatctt catgctgcga
     3061 cgactgatgc gaattgcttc gggaacccgg ttcagctcgt cgaccaggat cacgagatct
     3121 gccgcctctg cggtaacacc accgccgtgg cccgcgagag ctatcccgat tgttgcggca
     3181 ctcagcgccg gcgcatcgtt ggtcccgtcg cccaccatca gaacgcgatc accggctgcg
     3241 gtcaactccc tcaccaccgc aactttttcg tccggcttca tgtcgccccg gaactcggtg
     3301 atgcccaacg agtcggcgat cgcacgggcg ttgtcctcgt gatcacccga cagcaggagc
     3361 gcgcgccgaa ttccaagtga tttgagatca tcgagaactg ccggtacgtc atatcgcagc
     3421 tgctcgtcgt acgctaccac gccggcgaat cttccgttga tggcgacata cgccttgagc
     3481 ccgacggaca ggtccagcgg gatcgcgttg ccggtcttca ctgccagccg ctcggtgata
     3541 aagccgtgcg agccgaccat cacgatgtcg gcgccgaccg ttcctgtgac tccgcgaccg
     3601 ggtgactcga cgacgtcccg gattgccggc agtgattcgt tctcagccct cgcggcgtcg
     3661 accagcgtgc gtgcgagcag gtgtgccgct ccctgttcca cagtgccagc caggcgcaac
     3721 acatcggcac gcgagaaggg cggatacggc gtgacggtac gaaccacggg cttcccaact
     3781 gtcagcgtcc cggtcttgtc gagcactgca acgttggcgg tagcgagtcg ctcgattgcc
     3841 gcaccgttac gcacgattat ctggcgccga gccgcgcgat tgatcccgcc gattgtggcg
     3901 atcggtggcg cgagtatgag ggggcacggc gtggcgacga cgagtacggc gagaaatctt
     3961 tgatagtctc ccgacaccgc gacagcgaca accgcgatca ccagtgtggt tggcgtgaac
     4021 cagacggcat agcgatccgc aattcgttga aatggtgcct tggtctcgag cgcagaccgc
     4081 acgagctgca cgatgcgctc gtactgactg gcctgggcga ttgcggtggc ccgcatcgta
     4141 aataaccgat caccattgat gctcccgcta cttactggca cacccggctc tatcgactgc
     4201 ggtaacgatt caccggtgag catggatgtg tcgagctccg atctaccctc ctcgacgatt
     4261 ccatcgcatg ggacccgttc gccggcacgc acgatgacgc tgtcgccgac gacgatctcg
     4321 tctgccctga tgtcctgtat ctcgccggcg cgcaggacgt gtgcggatgt ggggcgatct
     4381 gcctccagct gctgaaccgc acgcgatgcg cgtccctccg cgtatcgctc gagtgcctcg
     4441 ccgccggtct gcattaccac gacaatgagg ccggccagtg gctcgttcat gacgacggat
     4501 gtgacgatcg ccagcgttgc cacgacatcc gacgcccact ggccgcgcag ggcgccacga
     4561 atggtgcctg ttacgatgat cgcaccgccc gaaaccacgc cggccatcca tatatggtgg
     4621 gcccacaccg gtgacttcag cacccacgcc atgagcccac cgagaacgaa ggcggttgcc
     4681 agtcccggga ctaccgcggg agaaccgtac cagcgcgcgt tactgccgtc acgccgggta
     4741 cgattcaccg cgttcgagtt cagtgctcta cctcgacgtg cccctgcatg cccagcgctg
     4801 catgcgggtc acactggaag taatactttc caggcgcgag gttgactgga acatccagag
     4861 tctggtccgg cagttgaaga aagtcgctcg ccggtggaag gttcgtcttg ccgggattgg
     4921 aatccgggag gaagtgtacg ttatgcactc cgctcttgag tgtgaaccgg atcacgtcac
     4981 cgcgatgcac ttcgaacttc gcgggcttga agtagttacc ctgcgcgtcg ctgttgagtt
     5041 cgacgacgac caccttgccg g
//
LOCUS       DATIMD010000580         1798 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2548679, whole genome shotgun sequence.
ACCESSION   DATIMD010000580 DATIMD010000000
VERSION     DATIMD010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2548679"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..521)
                     /locus_tag="VLI40_12960"
     CDS             complement(<1..521)
                     /locus_tag="VLI40_12960"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSU98136.1"
                     /translation="MVEVVGASYRAGGNLILDDVTARFRRGRFNVILGPNGAGKSSLL
                     KIATGLLQPSAGQVTYGGKSVRDFAPTELARRRAVLSQHVELAFPLPVRDVVLMGRYP
                     HYGRAPGAHDIEIVDRALEMVGMLERRAQHYPTLSGGEQQKVQLARVLAQIWSYDGAS
                     AHNYLFLDEPTASL"
     gene            complement(514..1572)
                     /locus_tag="VLI40_12965"
     CDS             complement(514..1572)
                     /locus_tag="VLI40_12965"
                     /inference="COORDINATES: protein motif:HMM:NF013219.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HSU98137.1"
                     /translation="MLNRTAYAGTYAALGIVLLASLVASAGFGAFTFTPSEMIRHIGE
                     GLGWVATTPSDTLSRNVFLQLRLPRVLLAALTGAVLGVSGTLMQGIFRNPIVEPGLAG
                     TSAGAALGASLVFVFGTTSALARPLGSFAVPVMAFIGAFAATMLVYRVSTSFGKVNVF
                     TLLLAGIAVNAVCGAGTGFLSYIARDPQARNITFWNLGTFTTADWRGVVMVAVAFAGC
                     FGISIRHGKSLNALMLGEDEAAFLGAEPEKLILRLIIVNTVMVAVATAMVGVIAFVGL
                     VIPHVLRMLKSSDYTFLIPASALLGAVMMSVVDIVARMIIPPAELPVGIITAVVGAPV
                     FLWILLRQQRRGAASFYG"
     gene            1606..>1798
                     /locus_tag="VLI40_12970"
     CDS             1606..>1798
                     /locus_tag="VLI40_12970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98138.1"
                     /translation="MMKESARVTSHITLVALATSMIACGPHVTLSPVPVHLADQSDPA
                     GVALATALAPVLHVQRDEPF"
BASE COUNT          384 a          585 c          531 g          298 t
ORIGIN      
        1 aggctcgccg tcggttcatc gaggaagaga tagttgtgcg ctgacgcacc gtcgtagctc
       61 cagatctgcg cgagtacgcg cgccagctgc accttctgct gctcgccgcc ggaaagcgta
      121 ggatagtgct gcgcgcggcg ctcgagcatt ccgaccatct ccagcgcgcg atcgacgatc
      181 tcgatgtcgt gagcgcccgg agcgcggccg taatgcggat atcggcccat gagcaccacg
      241 tcccgcaccg gcaacggaaa tgccagctcg acgtgctggg atagcaccgc gcgccttcgc
      301 gccagctcgg tcggcgcaaa atcgcgcacc gatttcccgc cgtacgtgac ctgacccgcc
      361 gacggctgca acagtccggt cgcgatcttg agcagcgatg actttccggc tccgttcggc
      421 ccaagaatta cgttgaagcg gccgcgacgg aaacgcgccg tcacgtcgtc gagaatcaga
      481 ttgccgccag cgcgatagct ggcacccacc acctcaacca tagaaactcg ccgcgccgcg
      541 ccgctgctgc cgcagcagaa tccacaggaa taccggtgcg cccacaactg ccgttatgat
      601 tcccaccggc agctccgctg gtggaattat catgcgggcc acgatgtcga ctacggacat
      661 catcaccgcg ccaagcagcg cggacgcagg gatgaggaat gtatagtcgg aagatttgag
      721 catccgcaac acgtgcggga tgacgagtcc gacgaaagcg atgacaccaa ccatcgccgt
      781 tgcgacggct accatcaccg tgttgacgat gatgagtcgc agaatcagct tctccggctc
      841 cgcaccgaga aacgcagcct cgtcctcgcc cagcatgagc gcgttgagcg acttgccatg
      901 cctgatcgag attccgaagc agccggcgaa cgccacagct accatgacga cgccgcgcca
      961 atcggccgtc gtgaaagtgc cgaggttcca gaaggtgatg ttgcgtgcct gtggatcgcg
     1021 tgcgatgtat gaaagaaagc ctgtacccgc gccacatacg gcattcaccg cgatcccggc
     1081 cagcagcagc gtgaagacgt tgacctttcc gaacgatgtc gagacacgat acaccagcat
     1141 ggtcgcggcg aacgcgccta taaacgccat gaccggaaca gcaaacgatc cgagcggccg
     1201 cgccagcgca ctggtcgttc caaacacaaa caccagcgat gcgcccagcg ccgcacccgc
     1261 ggaagtgccg gcgagacccg gctctacaat cgggttccgg aatattccct gcatcagtgt
     1321 accggacacg cccagcacgg ctccagtcaa tgccgccagc aacacgcgcg gcagtctgag
     1381 ctgcaggaac acgttgcggc tgagagtatc ggatggcgtc gtagcgaccc agcccaatcc
     1441 ttcgccgatg tgccggatca tctccgaggg agtgaacgtg aacgcgccaa accccgccga
     1501 ggcgacgaga gacgcgagca gaacgattcc gagagcagcg tatgttccag cgtaggccgt
     1561 acggttcaac attgcatgaa tggtaatcgg atgtggatga tttgcgtgat gaaggaatct
     1621 gcgcgcgtta cgtcgcacat caccttggtg gcgttggcga catcaatgat cgcgtgcggt
     1681 ccgcacgtca cgctgtcgcc ggttcccgta catctcgcag atcaatccga cccggctggc
     1741 gtcgcgcttg ccacggcact tgcgcctgtg ctccacgtgc aacgcgacga gccatttg
//
LOCUS       DATIMD010000581         6978 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1686350, whole genome shotgun sequence.
ACCESSION   DATIMD010000581 DATIMD010000000
VERSION     DATIMD010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6978
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1686350"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1138)
                     /gene="menC"
                     /locus_tag="VLI40_12975"
     CDS             complement(<1..1138)
                     /gene="menC"
                     /locus_tag="VLI40_12975"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HSU98139.1"
                     /translation="MLSIDRITLREIHLALKEPFRISSGTIHERRIALLELTDNDGAS
                     AWSECVAFQLPFYSPETIDTAWFAIREWLAPRVLGREFAGPDVIHDVLEENIRGHNMA
                     KAALEMGCWGLTAEAQQVSLSMLLGGTRERIPTGISLGIQREPGLLVERAQAAVADGY
                     RKIKVKIRPGQDVEYVRAVRESLGPSIGIMVDANSAYTPAQTEHLAELDAFDLVMLEQ
                     PLGEDDLVRHAALQRRMSTPICLDESITSVDRAEDMIALGAGRIINIKPGRVGGLTVS
                     MAVHDVCSDAGIPVWCGGMLESGIGRAYNVALASLPNFSLPGDLSPSARYWERDIVTP
                     EWTMDAEGMVRVPRDRAGIGVTVNTDLIESLAVRTEVLTAPARSV"
     gene            complement(1179..1943)
                     /locus_tag="VLI40_12980"
     CDS             complement(1179..1943)
                     /locus_tag="VLI40_12980"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HSU98140.1"
                     /translation="MAARGGVRRPAATPERPAKSAGIARGDGPLSVYEQLRDRIVRGR
                     LAPGIRLVESEIAALTGVSRTPVRAALERLRQEGYIVGTSTTSGARLGRAIVAPLTNE
                     DAREIYMIVAQIEGLAAREAATKPRELRRLMARDMRRSNDEFRAAARARMPNSDHLHD
                     LDDAFHHRYVEAGAGPRLLALHRAVKPQAERYGRIYTSTLASEVGTSAAEHDAIIHAL
                     EVGDPEGAQLAVQTNWNNAAKRLERVINAVGERGTW"
     gene            complement(2111..3901)
                     /locus_tag="VLI40_12985"
     CDS             complement(2111..3901)
                     /locus_tag="VLI40_12985"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047420 - N-acyl-D-amino-acid deacylase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacylase"
                     /protein_id="HSU98141.1"
                     /translation="MFFFQCGKPEWVRSSSLLAAIVVGVACTPHVATSPQAQRPEPGP
                     YDVVITGGKLVDGSGNAWFYGDVAIKGDRIARIAPRGMLDTSGARSHIDATGLVVAPG
                     FIDIQGQSGGSFLLGDGRDVSKLTQGVTTEILGEGETPAPENDLTLAGEDLSDKKVAA
                     VVAQMRGPHGFDAWLRAMQAHGISPNVGSFVGAGTIRQYGMGMREGAPASATLDSMRA
                     AVRRAMEDGAFGMASALIYPPNNYASTDELIAEAKAMAPYGGLYITHMRSEADKYLEA
                     IDEAIRIGREGGVPVEIYHLKAAGKRNWFKGPLAIAKIDSARAAGMDIQADMYPYTAG
                     GTGLTACLPPWSEANGKLFENLADPVMRARIKAEVEHPTSDWENLCEQATPQGVLITQ
                     LRAPEYKQFAGKRLSEIAAAQGKDWIDAAMDLILADRRRVETIYFIIDEDNLKLQLRQ
                     PWMKIGTDAGGYDPDSTTALVHPRSYGTYPRILGKYVREEHVLPIEDAVRKMSAAVAE
                     RLSIRDRGLLREGMFADVVTFDPRTIIDRATYERPHQISTGVQDVFVNGVLVVRDGRH
                     TGARPGRIVRGPGWVNAVGNAGNSAVNAAR"
     gene            4111..5784
                     /gene="dacB"
                     /locus_tag="VLI40_12990"
     CDS             4111..5784
                     /gene="dacB"
                     /locus_tag="VLI40_12990"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HSU98142.1"
                     /translation="MIHKARATENRRIIRSFWLATVTAGALVTTLPSMLVAQSVAQST
                     AQTASRSALATRIQRIVDRPEFRHAFFGIEFYSLDTGKPVYEMNSDKLFVPGSTTKLL
                     TMGTALSLLGPDFRFHTRAYRTGSIGSDGTLDGDVVLVASGDPNLSARVRPDGTLAFE
                     NEDHAYDGSPDTKAVPGDPLLVIREIARQIAAHGVKHVRGRVLVDATLFEGGDRELGT
                     GTVISPIVVNDNLVDLMIGGASSAGAQAVLTSSPATSYVRFVNAVTTGASDSQPHIRF
                     SSDVAGADGTHTVTVSGSTPAGKPAILYSYAVPDPPLFAEFVLTEALHDAGVTVDSAP
                     RERNGQPGQQNAAPDFKAIAASYTPDHMVAEHVSPEFKEEVKVTLKVSQNLHASMTPR
                     MIRAVLAPHDTGKTGFDLEHDFLTKAGLDLSGAQQADGAGGDAHFTPQFMVAYLAYMN
                     RQKNSAVFYNALPILGRDGTLWNVQTSSPAAGHVHAKTGTYDVGDPLNRTMLVTGKGL
                     AGYMTTADGRHLAVAIYVNNVAVSLDPNAVTAIVGQALGEIAAAAYEGP"
     gene            complement(5800..>6978)
                     /locus_tag="VLI40_12995"
     CDS             complement(5800..>6978)
                     /locus_tag="VLI40_12995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSU98143.1"
                     /translation="LGALTYGELGAMDPEAGGLYVYIRDAFGPLPAFLYGWTLFFVIS
                     SGSVATLAVATTGYLSQLVPLSPLESKLAALAMVAIIAIINVRGTRESARVQDWSTLI
                     KTVAIVGLSLVMLVLGRGLSQTAGHVWPASLKPSLLSGIGLAMVGVLWAYEGWQYVTF
                     SAGETRDPQRTFPRGIIIGTALLIAIYMLANVGYIAALGPAAAAQSPRIAADAVGVTM
                     GSAAAKLVAATIVLSMFSAANGLTLTAPRVYYAMARDGVFFQRLATVHPRFGTPAFAV
                     IASSLWAMILAATGTFTVLLTYVVFTGWIFYALGALSIFSYRRSRPNATRPFRVPGYP
                     VTPILFVLASAAIVINTLLTQPGIALRGLIVVAIGVPAFYAWRVQRRRRATVSGDASA
                     "
BASE COUNT         1309 a         2228 c         2120 g         1321 t
ORIGIN      
        1 ccaccgatct ggcaggtgcc gtcagcacct cggtacgaac tgcgagtgac tcgatgagat
       61 ccgtatttac ggtcacgccg atcccagcgc gatcacgtgg gacgcgcacc ataccttcgg
      121 cgtccattgt ccattcgggc gtcactatat cgcgctccca gtatcgtgca cttggactca
      181 ggtcgccggg cagcgagaag ttgggcagcg atgccagtgc tacgttgtat gctcgaccga
      241 tgccgctctc gagcattcca ccgcaccata cgggaatgcc agcatcgctg cacacgtcat
      301 gcacggccat tgatacggtg agcccgccga cccgtcccgg cttgatgttg atgatgcgcc
      361 cggctccgag cgcgatcatg tcctccgccc ggtccacgct ggtaatcgat tcgtccagac
      421 agatcggagt cgacatgcgc cgctgcagcg cggcgtgacg caccaggtca tcctcgccca
      481 acggctgctc gagcattacg agatcgaacg catcgagctc ggcgaggtgc tccgtttgcg
      541 ccggcgtgta cgccgagttt gcgtccacca ttatcccgat ggatgggccg agtgactcac
      601 gcaccgcgcg aacgtactcg acgtcctgac caggcctgat cttcaccttg atcttgcgat
      661 aaccatccgc caccgcggct tgcgctcgct cgaccagcag gccgggctcg cgttgaatgc
      721 caagagagat cccggtgggg attcgttctc tcgttccgcc aagtaacatg gaaagagata
      781 cttgctgcgc ttcagcggtc agtccccagc agcccatctc gagtgcagcc ttggccatgt
      841 tatgaccacg gatgttctct tcaagcacgt cgtgaatgac atccggtccg gcgaactcgc
      901 gaccaagcac gcgcggcgcc agccattccc gaatcgcaaa ccacgcagta tcgatcgtct
      961 cggggctgta gaatggcaac tggaacgcga cgcattccga ccacgcactc gcgccatcat
     1021 tatcggtgag ctcgagcagc gcaatacgcc gctcgtgtat ggtgccggat gaaatccgga
     1081 acggctcctt gagtgcgaga tggatctcgc gaagtgtgat gcgatctatc gagagcacgc
     1141 cggcgcccgt acgtgatctg accctctcgc cacttcactc accatgttcc gcgctcgcca
     1201 actgcgttga tgactcgctc caggcgcttg gctgcgttat tccagttggt ctgcacggcg
     1261 agttgcgccc cctccgggtc tccgacttca agcgcgtgaa tgatggcgtc gtgctcggcg
     1321 gctgacgttc ctacttcact cgcgagtgta ctcgtgtaga tccgtccata ccgctccgcc
     1381 tgtggcttga ccgctctgtg cagagcgaga agacgcggac ccgcaccggc ctcgacgtat
     1441 cgatgatgga atgcgtcgtc gaggtcgtgg agatgatccg aattgggcat gcgtgcccgg
     1501 gcggcggcgc ggaactcgtc gttggagcgt cgcatgtcgc gcgccatgag gcgtcgcagc
     1561 tcgcgtggct tggtggccgc ctcgcgcgcc gccagtccct cgatctgcgc cacgatcatg
     1621 tagatctctc tggcatcctc attagtcagc ggtgcaacaa tggctcgtcc gagtcgtgcg
     1681 cctgacgtag tggaagtacc gacgatgtaa ccttcctgcc ggagccgctc cagtgcggcc
     1741 ctgacaggag tccggctcac cccggtaagt gccgctattt cactctccac gaggcgtatg
     1801 cccggggcga ggcggccgcg cacgatgcgg tcgcgaagct gctcgtaaac gctgagcggc
     1861 ccgtcaccac gcgcgatgcc ggccgatttt gcggggcgtt ccggcgttgc cgccggccgc
     1921 cttactccgc cgcgggcggc cacgacgaaa gggggcgact cagggcccta tcaaacccgc
     1981 agcaagactg agttgtcagg gtgtatttgt ctggcatttt gtataccgaa tgtgtatcca
     2041 aaaatgtatc gggaagtgac gtggatgtcg agtgcggcaa ctggcttctt acacaaactc
     2101 gacacggatc ttaccgtgcc gcattcaccg cagaattccc cgcattcccc acagcattca
     2161 cccagccggg tccacgcacg atacgtccgg gcctggctcc agtgtgtctg ccatcgcgaa
     2221 ccaccaacac gccattcacg aagacgtctt gcactccggt cgaaatctga tgcgggcgtt
     2281 cgtacgtcgc gcgatcgatg atcgtgcgtg gatcgaaggt cacgacatcg gcgaacattc
     2341 cttcgcgcag aagaccgcgg tcccggatcg agagccgttc agccacagcc gcactcatct
     2401 tgcgaaccgc gtcctcgatc gggagcacgt gctcctctcg tacgtacttg cccaggatac
     2461 gtggatatgt accatacgag cgcggatgca ccaacgctgt cgtgctgtcc gggtcgtagc
     2521 cgccagcgtc ggtgccgatc ttcatccacg gctggcgcaa ttgcagcttg aggttgtctt
     2581 catcaatgat gaagtagatg gtttcgacac gacgacgatc ggccaggatg aggtccatcg
     2641 ccgcgtcgat ccaatccttg ccctgtgcag cggcgatctc cgacagccgc ttgccggcga
     2701 actgcttgta ctccggcgcg cgcaattgcg tgatcagtac accctgcggc gtggcctgct
     2761 cgcacagatt ctcccagtcc gacgtcggat gctcgacctc cgccttgatc cttgcgcgca
     2821 tcacgggatc cgcgaggttc tcgaacagct tgccgttcgc ttcggaccac ggcggcagac
     2881 aggcggtgag accagtgccg ccggcggtgt acggatacat gtccgcctga atgtccatgc
     2941 cggccgcgcg cgccgaatcg atcttcgcga tcgccagcgg tcccttgaac cagttgcgct
     3001 tgcctgcggc cttgaggtgg taaatctcca ccgggacgcc tccctctctg ccaatgcgga
     3061 tcgcctcgtc gatcgcttcg agatacttgt cggcctccga gcgcatgtgg gtgatgtaga
     3121 ggcctccata gggtgccatt gccttcgcct ccgcgatcaa ctcatcggtg gacgcgtagt
     3181 tgttgggcgg gtagatgagc gcgctcgcca ttccgaacgc gccatcctcc atcgcacggc
     3241 gcaccgccgc acgcatcgaa tcgagcgttg cgctcgcagg cgcgccctct cgcattccca
     3301 ttccgtactg ccggatggtt cccgcaccga cgaatgatcc aacgttcggt gagatcccat
     3361 gcgcctgcat ggcgcggagc cacgcgtcga agccatgcgg cccgcgcatc tgcgcgacga
     3421 cggccgccac tttcttgtcg ctgagatcct cgccggccag agtgaggtcg ttctccggtg
     3481 ccggcgtctc gccctcaccg agtatctcgg tagtcactcc ctgggtaagc ttgctgacgt
     3541 cccggccgtc acccaggaga aacgagccgc cggattggcc ctggatgtcg atgaaccccg
     3601 gcgccacgac gagaccggtc gcatcgatgt gtgatcgtgc gccactggta tccagcattc
     3661 cgcgcggggc gatccgcgca atgcggtcgc cctttatcgc cacatcgccg tagaaccacg
     3721 cattgccgct cccatccacc agcttgccgc cggtgatcac cacatcgtat ggtccgggtt
     3781 ccgggcgctg cgcctgcgga gacgtcgcga catgcggcgt gcacgccact cccactacga
     3841 tggcagcaag caaggacgag ctccggaccc actctggctt gccgcactga aaaaagaaca
     3901 tggagtactc ggcgtggtcg gtgacggggg gggcggcgat caggcggtcg aggcggcgcc
     3961 cttgcgcgcc accagcttcc cgcacatgat tggccggtgc actgtataca atcttgtgaa
     4021 ccaaagagaa atactccact ctgcacaatt cgggaagatg cagccgtgca gcgtcccata
     4081 cgaaaaccat cacgacgcga ggactccaga gtgatccaca aagcccgggc aaccgaaaat
     4141 cgacgcatca tccgctcgtt ctggctcgcc accgtgaccg caggcgcact ggtcaccacg
     4201 ctgccatcca tgctggtcgc gcagtccgtt gcgcagtcca ctgcacagac ggcgtcgcgg
     4261 tcggcgctcg ccactcgcat tcagcgcatc gtcgatcgcc ccgagttccg gcacgcgttc
     4321 ttcggcatcg agttctactc gctcgacacc ggcaagcctg tgtacgagat gaactccgac
     4381 aagctgttcg taccgggatc gactaccaaa ctcctgacga tggggacagc gctgtcgctg
     4441 ctcggtccgg attttcgatt ccatacacgc gcgtaccgca caggttctat cggttccgac
     4501 ggaacgctgg acggtgacgt ggtgctggtt gcgagcggtg atcccaacct ctcggcgcgc
     4561 gttcgtcccg atggaacgct cgcgttcgag aacgaggatc acgcatacga cggctctccc
     4621 gacacgaagg cagttcctgg cgatccgctg ctggtgatcc gcgaaatcgc gcgacagatc
     4681 gcggcccatg gagtgaagca cgtgcgcgga cgcgtgctcg tggacgcaac attgttcgaa
     4741 ggtggtgacc gggagttggg gaccggcacc gtgatctcgc caatcgtcgt caacgacaat
     4801 ctggtcgacc tgatgatcgg cggcgcatcg tccgctggtg cgcaggcggt gctcacttcg
     4861 tcacccgcga cgtcctacgt gcgattcgtt aatgccgtca cgaccggcgc ttccgattca
     4921 cagccacaca tccgcttctc ttccgacgtc gctggcgcag acggcacgca taccgtcacc
     4981 gtttcgggaa gcacaccagc aggcaagcct gcgattctct acagttacgc agtgccggat
     5041 ccgccgcttt ttgccgagtt cgttctgacc gaggcactgc atgacgcggg tgtgactgtc
     5101 gactctgcgc cgcgggaacg gaacggacag ccgggtcagc agaatgcagc acccgacttc
     5161 aaggccatcg ctgcgtcgta cacgccggat cacatggtgg ccgagcacgt ctcaccggag
     5221 ttcaaggaag aagtgaaggt caccctcaag gtgagtcaga accttcacgc cagtatgacg
     5281 ccgcgtatga tacgcgccgt gctcgcgccg catgacacgg gcaagacggg gttcgatctc
     5341 gagcatgatt ttctgacgaa agcaggactg gatctcagcg gtgcgcagca ggctgacggc
     5401 gctggtggcg acgcacactt cacgccgcag ttcatggtcg cctatctcgc gtacatgaac
     5461 cgccagaaga actcagccgt tttctacaac gcgcttccga ttctgggacg cgatggaacg
     5521 ctgtggaacg tgcagacttc gtctccagcc gctggccacg tgcacgcgaa aaccggaacg
     5581 tacgacgtgg gtgatccgct caaccgtacg atgctcgtta cgggcaaggg tctcgcgggt
     5641 tacatgacca cagcggatgg gcgtcatctg gcagtggcaa tttacgtgaa caatgttgca
     5701 gtgtcgcttg acccgaacgc ggtaactgca atcgttggcc aggcgctggg cgagatagcg
     5761 gccgcggcgt acgaggggcc gtaacgccag ccgccgtgct cacgcacttg cgtcgccgct
     5821 tacggttgcg cggcggcggc gctgcacccg ccacgcatag aaggcgggaa cgccgattgc
     5881 gacgacgatc agaccgcgca atgcgattcc gggttgtgta agcagtgtgt tgatgacgat
     5941 tgcggcggat gcgagcacga agagaatcgg agtgacggga taacctggca cacgaaacgg
     6001 gcgagttgcg ttgggacgac tgcggcggta gctgaagatg ctgagcgcgc cgagtgcgta
     6061 gaatatccag ccggtgaaga cgacgtaggt aaggagcacc gtgaacgttc ctgtggcggc
     6121 gaggatcatt gcccacagcg agcttgcgat cactgcgaac gctggggttc cgaatcgcgg
     6181 gtgcacggtc gcgagacgct gaaagaacac gccgtcgcgc gccatcgcgt aatagacgcg
     6241 cggcgccgtg agcgtgagac cgttggcggc gctgaacatc gacagcacga tcgtggcggc
     6301 gaccagcttt gcggcggcag atcccatcgt cacaccaacg gcatccgcgg cgatgcgcgg
     6361 agattgcgct gcagctgcgg gaccaagcgc cgcgatatag ccgacgtttg ccagcatgta
     6421 tatcgctatc aggagtgcag tgccgatgat gatcccgcgc ggaaaggtgc gctgcggatc
     6481 acgcgtctct cccgccgaaa acgtgacgta ctgccatccc tcgtatgccc acagcacacc
     6541 gaccatcgcg agcccgatgc cggaaaggag cgatggcttc agcgacgcag gccagacgtg
     6601 accggcagtc tgcgacagtc cgcgtcccag tacgagcatg acgagcgaca gtccaactat
     6661 cgctaccgtc ttgatgagcg tcgaccagtc ctgcactctc gcgctctctc tggtgcctct
     6721 cacgttgatg atcgcaatga ttgcgaccat cgcgagcgct gcgagcttcg attcaagtgg
     6781 tgagagtgga acgagctgac tcaggtatcc ggttgttgcg actgcgagtg tcgcgaccga
     6841 ccccgagctg attacgaaga agagcgtcca accatagagg aaggcgggaa gggggccgaa
     6901 ggcgtcgcga atgtacacgt agaggccgcc ggcttccggg tccatcgcgc caagctcacc
     6961 ataagtaagt gcgccgag
//
LOCUS       DATIMD010000582         5160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_238973, whole genome shotgun sequence.
ACCESSION   DATIMD010000582 DATIMD010000000
VERSION     DATIMD010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5160
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238973"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..744
                     /locus_tag="VLI40_13000"
     CDS             <1..744
                     /locus_tag="VLI40_13000"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HSU98144.1"
                     /translation="RRAITTCTMLLATATATFPASPANAQGDSARNGARNSARNSSRD
                     STGFPQPTIAATVVLLAAGAAVDRPMRRLIADRGHSPVVNSLSNAGNDLGTAGHIIPV
                     LAGSYVIERIAGRRRPADDIVDAAAGYAASDIIEGLLKSAVGRERPMVSGNPERFHPF
                     TSRGDFHSFPSGHLTHISSIAAAAAIESHEPWVRALGISATTLVGWQRIHADQHWTSD
                     VIAGALLGDFVSSAVVHRLRRLHGHPFGL"
     gene            complement(842..2125)
                     /locus_tag="VLI40_13005"
     CDS             complement(842..2125)
                     /locus_tag="VLI40_13005"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSU98145.1"
                     /translation="MSRIAPRVRSLCVVAAVVAVAILAGCKTQDLLDVKAPDRVPAST
                     LDNPAQAALMVNSTAADFECAVGSYVLVEGIISDEFGDAQLGAAAWPYDRRDANTQTG
                     GVYGTNDCTNNQTPGIYLPLSTARWSADTALNKLQGWTDQQVPGRDSLVARAALYAGF
                     DYTMLGMSMCQASFDLGKPIDQPAMFAEAEKRFTIAIDQGNKAGASNVVNAALVGRAR
                     VRLFQGNLTGAAADAQLVPAGFVFSASTGSDDNRRYNRIYAATTQFGDYTVEVGDRAL
                     TTEGVPDPRAAAAKQTTRAADAKSTIWAPTKYTSDATPIPVARYEEARLILAEAQGGA
                     NAVSIINALRDQYSLPHYSGATDAASITQLIINERQRTLFAEGFRNYDIERFKIPFNP
                     PAGAPYPNKGGTYGNTTCLPLPDIERFNNPNASSS"
     gene            complement(2151..>5160)
                     /locus_tag="VLI40_13010"
     CDS             complement(2151..>5160)
                     /locus_tag="VLI40_13010"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSU98146.1"
                     /translation="LSSAILGVSPVATQAGAQAGVPAGVVSGTVVAEASQRPIPGAEV
                     AVVGQAGKGAVTDASGHFRIGGLAGAAGTQVTLNARMLGYRAATQAARLGATDVKFAL
                     TERLVELNSVVVTGTAGGQQQRALGNSVARINAAEVVATAPVPSVQDLINGRAPGVVV
                     LPGTGMVGSGSRIRIRGPSSFSLSGDPLIYVDGVRVDNETGSGMQVQAFGSGVVSRLN
                     DFNPDEIESIEILKGPAAATLYGTEASNGVINIITKKGSATGTRYSFTAREGSNWFQN
                     ALGRTPTNYWMDPTGKIQSVNVVATENARGTPIWRDGKIGDYSADMSGGAGTLRYYAA
                     AGLIGDQGADPTNAKRQFSGRTNLQVIPSEKFDLSTSLGYIDGVTNLTCEGGCGGATW
                     GSFFSNPANLASNCPPNADVGCGWGRGFQSSPPESDRAMQDWQDINRVTASATLNFKP
                     LSWMTHRLVVGTDFTQEKNEELLPYLTNDTLRYFWGQTADGYKYQSRREIVYNTYDYT
                     GTAHFNLSSSLSSATSFGAQYYKKHISSITAEGDFFPAPGLETVSSAATKPTTLDDFL
                     DNNTLGYYGQEQFGWHDRLFLTGAVRVDNNSSFGKDVKWVTYPKASLSWVLNEEPFFK
                     QHLPSFVNTFKLRAAYGQSGQQPDIFTALRTFNPVPGPNGTPALTPGTSGNPNLAPER
                     GIETEGGFEADFLNERFGIDFTYYNKLTKNAILLRGVAPSTGFGGNSQYVNAGQILNK
                     GIEALFKAQVISSTNYGWDLNLNISHNTGLVKKLSGTDTTIVSGYTQQRIGYAPFSWF
                     AERVVSAQYDPTTKRAINAMCDDGKGGTTPCLNANGKVIAPRVYLGREVPSLEGSFGS
                     DIRFLGHFRLGTMIDFKRGFKRLDNNLRIRCQIFRTCLENIEPQNYDPRVVAQMQTNG
                     TLRDFVINDASFAKLRELSLSFDAPPNYSRLVGAKSASLSVAGRNLHTWTKYTGTDPE
                     AYFLSNNGYGTDQAELPQLTSFVFTVHLTY"
BASE COUNT          938 a         1593 c         1550 g         1079 t
ORIGIN      
        1 cgtcgtgcca tcacgacatg caccatgctg ctcgccacag cgacggcgac ttttccagcg
       61 tcgccggcta acgcacaggg cgacagtgct cgcaacggtg ctcgcaacag tgctcgcaac
      121 agctctcgcg acagcacagg ctttccacag ccgaccatcg ccgccactgt cgtgctcctc
      181 gccgctggcg ctgcggtcga ccggcccatg cgccgactga tcgccgatcg cggtcacagt
      241 ccagttgtca attcgctttc gaacgccggc aacgacctgg ggacggcggg acacatcata
      301 ccggtgctgg ccggttcgta tgtgatcgag cgcatcgcgg gacgaagacg tccggcggat
      361 gacatcgtcg acgcggctgc tggatacgcc gcgtcggaca tcatcgaagg actgctcaag
      421 agcgcggtag gacgggaacg gccgatggtg agcgggaacc ccgaacggtt tcacccattc
      481 acgagtcgcg gcgacttcca ctcgtttcca tccgggcacc tgacgcacat ctcgtctatc
      541 gctgcagcag ctgcaatcga atcacacgag ccctgggttc gcgcgctcgg cataagcgcg
      601 acgacgctcg taggttggca gcgcatacac gccgatcagc actggaccag cgacgttatc
      661 gcaggggcac tgcttggcga tttcgtcagc agcgcggtgg tgcaccggtt acgacgactg
      721 cacgggcatc cgttcggcct gtaatcccat cgcaggcgtc atgagcgatc acgtcgaaca
      781 tccgcgagat gttccgcacc atgcggaggg ccagtgttca aactggccct ccgcactatc
      841 gtcatgatga cgatgcgttc ggattgttga accgctcgat gtccggaagc ggcaggcatg
      901 tagtattgcc atacgtgccg cccttgttcg ggtatggcgc gccggccggt ggattgaacg
      961 gtatcttgaa cctctcgata tcgtagttac ggaagccttc ggcgaacaac gtcctctgcc
     1021 gctcattgat gatcagctgc gtgatcgaag cggcatcggt tgctccgctg taatgcggga
     1081 gactgtactg atcccggagc gcattgataa tgctcacggc atttgcaccg ccctgtgcct
     1141 cggcgaggat gagccgcgct tcctcgtacc gcgcgaccgg aatcggtgtc gcgtccgacg
     1201 tgtacttcgt cggcgcccag attgtcgact ttgcgtccgc ggcacgagtc gtctgcttcg
     1261 ccgcggctgc gcgcggatcc ggcacacctt ctgtcgtgag cgcgcggtca ccgacctcta
     1321 cagtgtagtc gccaaactgc gtagtggctg cgtagatgcg attgtaacga cggttgtcgt
     1381 ctgatcctgt actcgcactg aagacgaatc ctgctggtac cagctgcgca tcggctgccg
     1441 cgccggtcag atttccctga aacaatcgca ctcgcgctcg gccaaccagc gccgcgttga
     1501 cgacgttgga cgctccagcc ttgtttccct gatcgatggc aattgtgaag cgcttctccg
     1561 cttctgcgaa catcgccggc tgatcgatgg gcttgccaag atcgaatgac gcctggcaca
     1621 tggacattcc caacatcgtg taatcgaaac ctgcatacag cgcagcccgt gcgaccagac
     1681 tgtccctgcc cggcacctgc tggtcagtcc atccctgcag cttgttcaga gcagtgtcgg
     1741 cggaccagcg ggcggtggac agaggcagat agatgcccgg tgtctgattg ttggtgcagt
     1801 cgtttgtacc gtacacaccg ccggtctgcg tgttggcgtc ccgtcggtcg tacggccacg
     1861 ccgctgcacc cagctgcgca tcgccgaact cgtccgagat gattccctcg acgagcacgt
     1921 acgatccaac tgcgcattca aagtccgcgg ccgtgctgtt caccatcagt gccgcctgcg
     1981 ccggattgtc cagcgtcgat gcaggaaccc ggtcaggcgc tttcacatcc aacaggtcct
     2041 gtgtcttgca gcctgccagt atggcgactg cgaccacagc cgcgacaaca cacaagctgc
     2101 gcacgcgcgg cgcgatcctg ctcatttgcg ttcgatgcat tgtcaggtcc tcagtaggtc
     2161 aggtggacgg tgaagacaaa ggacgtgagc tgcggcagct cggcctgatc ggtgccatat
     2221 ccgttgttgg aaaggaagta ggcctcggga tcggttccgg tgtacttcgt ccatgtgtgc
     2281 agattgcgcc cagcgacgct gagtgaagcc gacttcgcac cgacgagccg tgaatagttt
     2341 ggcggtgcgt caaatgacag cgagagctcg cgcagcttgg cgaagcttgc atcattgatt
     2401 acgaagtcgc gcagcgtacc attggtctgc atctgtgcga ccactctcgg atcgtagttc
     2461 tgcggctcga tgttctccag acaggtacgg aagatctggc agcgaatgcg cagattattg
     2521 tcgagtcgct tgaagccgcg cttgaagtcg atcatcgtgc ccaggcggaa gtggcccagg
     2581 aaccgtatgt cggacccaaa cgatccctcg agtgacggca cttccctgcc gaggtacacg
     2641 cgcggcgcga tcaccttgcc gttcgcgtta agacatggcg tggtgccacc cttcccatcg
     2701 tcgcacattg cgttgatggc tcgcttggtg gtcggatcgt attgcgcgct caccacccgc
     2761 tcggcgaacc acgaaaacgg cgcgtagccg atgcgttgct gagtgtatcc ggatacgatg
     2821 gtagtgtccg tcccactcaa tttcttcacc agtccggtgt tatgcgagat gttcaggttc
     2881 aggtcccatc catagttggt gctcgagatg acctgtgcct tgaacaacgc ttcgattccc
     2941 ttgttgagaa tctggccggc gttcacgtac tgactgttgc cgccaaaacc agttgacggt
     3001 gcaacgccgc gcagcagaat cgcgttcttc gtgagcttgt tgtagtacgt gaaatcgatc
     3061 ccgaagcgct cgttcaggaa atcagcctcg aaacctcctt cggtctctat gcctcgctcc
     3121 ggagcgagat tcggatttcc cgaggttccc ggcgtgagcg ccggtgtgcc gttgggtccc
     3181 ggcacagggt tgaatgtgcg cagcgccgta aagatgtcag gctgttgtcc cgactggccg
     3241 tacgccgcac gcagcttgaa agtgttgaca aaggacggca gatgctgctt gaagaacggc
     3301 tcctcgttca atacccagga gagactggcc tttggatatg taacccactt cacgtccttg
     3361 ccgaacgagc tgttgttgtc aactcgcacc gcgccagtga ggaacagacg gtcatgccag
     3421 ccgaactgct cctgtccgta atatcccagc gtgttgttat cgagaaagtc gtccagagtc
     3481 gtcggcttcg tcgccgccga tgaaaccgtt tcgagcccgg gcgccgggaa gaagtcacct
     3541 tcggcagtta tcgacgagat gtgcttcttg tagtactgtg cgccgaacga cgtcgccgag
     3601 ctgagactgg agctcagatt gaagtgcgcc gttcccgtgt agtcataggt gttgtatacg
     3661 atctcgcggc ggctctggta cttgtaacca tcggctgtct ggccccagaa gtagcgaagc
     3721 gtatcgttgg tcagatacgg cagcagctcc tcgttcttct cctgcgtgaa gtcggttccc
     3781 acgaccaggc ggtgcgtcat ccaggagagc ggcttgaagt tcagagttgc gctcgccgta
     3841 acacgattga tgtcctgcca gtcctgcatc gcgcgatcgg attccggtgg tgagctctga
     3901 aagccgcgtc cccagccgca gccgacgtcg gcgttcggtg ggcagttgct cgcgaggttt
     3961 gcagggttcg agaagaagga accccacgtc gcgccgccgc atcctccttc gcaggtgagg
     4021 ttggtgacgc cgtcgatgta gccaaggctg gtcgacagat caaacttttc gctcggtatc
     4081 acctgcaggt tggtgcgccc gctgaactgg cgcttcgcgt tggtcgggtc cgcgccctga
     4141 tcgccgatga ggccggcggc cgcgtagtag cgcaacgttc ctgcaccacc gctcatgtct
     4201 gccgagtagt cgccgatctt gccgtctcgc cagatcggtg ttccacgcgc attctcggtc
     4261 gcaacgacgt tcaccgactg gatcttgccc gtcggatcca tccagtaatt cgtcggcgtg
     4321 cggccgagag cgttctggaa ccagttggag ccttctcttg cggtgaagct gtagcgtgta
     4381 cccgttgccg agcctttctt ggtgatgatg ttgatcacac cgttggacgc ttccgtgccg
     4441 tagagagtcg ctgcggctgg acccttgaga atctcgatgc tctcgatctc atcaggattg
     4501 aaatcgttga gtcgcgaaac gacgccggaa ccgaaggcct gaacctgcat tccgctaccg
     4561 gtctcgttgt cgacgcggac accatcgacg tagatcagcg gatcaccact cagggagaac
     4621 gaggatggtc cgcggatcct gatcctggaa ccacttccga ccattccggt cccgggcagc
     4681 acgacgactc ccggtgctcg gccgttgatc aggtcctgca cggacggaac cggggcggtg
     4741 gccaccacct ctgcggcatt gatcctggca acggagttgc caagagctcg ctgctgttgc
     4801 ccgccagcgg ttcctgtaac gactacgctg ttcagctcca cgagacgctc cgtcagggcg
     4861 aacttaacat cggtcgcccc taggcgcgct gcctgcgtag cggcgcgata gcccagcatt
     4921 cgagcattga gcgtaacctg ggtgccagcg gcaccggcga gaccaccaat ccggaagtgg
     4981 ccggacgcgt ccgtcacagc accctttcct gcctggccga caacggctac ctcggcgccc
     5041 ggaatcggcc gctgggacgc ctccgctacc actgtgccgg agacgactcc ggccgggact
     5101 ccggcctggg ctccggcctg cgttgcgacc ggtgaaacgc caagtatcgc gctcgacaac
//
LOCUS       DATIMD010000583         1521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3708341, whole genome shotgun sequence.
ACCESSION   DATIMD010000583 DATIMD010000000
VERSION     DATIMD010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3708341"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VLI40_13015"
     CDS             <1..283
                     /locus_tag="VLI40_13015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98147.1"
                     /translation="VDSSTRSGDSTNTIPRATGTIHYRELEDGSWIIDNWTITVPVIA
                     YYAQSPRQRGSGDNTDSTKSQPRPYVERLHEFGGNVTEVIMPRSNSRNP"
     gene            complement(305..1210)
                     /locus_tag="VLI40_13020"
     CDS             complement(305..1210)
                     /locus_tag="VLI40_13020"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSU98148.1"
                     /translation="MHRIRLHAAPSFNRRRFVLATSVALALAACARSDGRGTANRVVG
                     VSKQINEFMYAIGAQNNLVARDLTSIYPPAIRSLPSVGYHRALSAEGIISMKPTLFLT
                     DGNVGPDAVLDQLKKVGIPMLVIKPGESLDSAQMLMTQLGRQFHREKSADSVLAQWRS
                     GLDSSWKDTAQWTGKPHPRVLIMHFGQIGNSYLAVGGTGPATQMLHWAGAVNAIDSTR
                     SMTRLTPELIAQLAPDVIIATDVGFDRVGSADKFASLPGVNLTPAGRDKRIYRINEQE
                     LLYFGPRTPATVRELVPMVHPMAAK"
BASE COUNT          301 a          455 c          459 g          306 t
ORIGIN      
        1 tgtagattcg tcgactcgca gcggcgactc gaccaacacg attccgcgtg cgaccggcac
       61 gatacactac cgcgagctcg aggacgggag ctggatcatc gataactgga cgatcacagt
      121 gccggtcatc gcctactacg cgcaatctcc gcggcaacgc ggttccggcg acaacactga
      181 ttccacgaaa agccagccac gaccgtacgt ggaacggttg catgaatttg gcggcaacgt
      241 taccgaggtg atcatgccgc gcagtaattc gcggaatcca tgagtcattg ccgagtcatt
      301 gccgctactt tgcagccatc ggatgcacca tcggtacgag ctcgcgcact gttgcgggtg
      361 tgcgcggtcc gaagtaaagc agttcctgtt cgttgattct gtaaatgcgt ttgtctctgc
      421 ctgctggtgt gagattcacg cccggtagcg acgcgaactt gtcggcgctg ccgacgcgat
      481 cgaatccaac gtcagtcgca attatcacat ccggcgcaag ctgagcgatc agctctggtg
      541 tgagcctcgt catggatctg gtcgagtcga tcgcattgac ggctccggcc cagtgcagca
      601 tctgagtagc cggaccagtt ccgcccaccg ccagatagct gttcccaatc tgcccgaagt
      661 gcatgatgag gacgcgcggg tgcggcttgc ccgtccattg agccgtgtcc ttccagctcg
      721 aatccaagcc gctgcgccat tgcgccagca cgctgtccgc tgacttctcg cgatggaatt
      781 gtctgccgag ctgcgtcatc agcatctgcg cactgtccag cgactcgccg ggcttgatca
      841 cgagcatcgg gataccgacc ttcttcagtt gatccagcac cgcatccggg cccacgtttc
      901 cgtctgtcag aaagagcgtc ggcttcatcg aaatgatgcc ttccgcgctc agggcgcggt
      961 ggtaaccgac cgacgggagt gatctgatcg ctggaggata gatcgacgtc agatcgcgcg
     1021 cgaccagatt gttctgcgcg ccgatggcat acatgaattc gttgatctgt ttcgatacgc
     1081 cgacgacgcg gttggcggtg ccgcgcccgt cggatctggc acatgcggcc agcgcgagtg
     1141 cgacgctcgt ggcgagcaca aagcgcctgc ggttgaatga cggagctgcg tgaagccgga
     1201 tacggtgcat tgggcgatag gaatgggcac tacgtacaga cgtaattatg agaggacatg
     1261 gcggcggcga accggccgcg acctgaccgc gacccgccga caattcggcc gaaaacgggc
     1321 ccgatcccgc tatgaccggc atgactaaga ttacgctaag gccaattcgt ccgttgcgat
     1381 ccgctccgaa tggcggcaat ttctggctaa gagtaccaat tcctttcatg gagaacggca
     1441 atgcggctca tctcacgctc gttcgcgatg gcggcggcta tcgcgatggc atcagcgctc
     1501 agtgcgggcg cggcaagtgc g
//
LOCUS       DATIMD010000584         5095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5445313, whole genome shotgun sequence.
ACCESSION   DATIMD010000584 DATIMD010000000
VERSION     DATIMD010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5095
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5445313"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1809)
                     /locus_tag="VLI40_13025"
     CDS             complement(<1..1809)
                     /locus_tag="VLI40_13025"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU98149.1"
                     /translation="MAITVDPAAAAPASEQPPSVPADTRSADLGAGISIYRRLLPFLK
                     PHSWRMVGAITTNIAAALLDAFSVALLIPFLNTLFDRPALDIKAGWVSDLLHATVGQL
                     MVSGDKMGSLRNVIFVVMIVVVAKNFLVWVSGQFGAELQEYVTRDLRNSVYRHLARLP
                     LTYFTRTKSGQIISRVLNDTFETRLVLTQIVTQSLQAAALVVSTIAFLFDISWRLTIM
                     ALVIVPILSLVLQPLLKKLRRGNRRRGNQHGEMASVLQETVSGVRLVKSFGAEEFEER
                     RFTNASDTYARTTVRLTKLSFLAPPVTEVIGMLIAVTLLWVGAHQVLVDGSLTGADLI
                     TFLVFVLRLLQPLKQLTAVRATAQSSLASAERLFDILDTPSEQERDRGTIHVDGFHRD
                     VRFDNVGFSYDGEGGHRETPVLRDVSFTAARGDVIALVGASGAGKTTLVDLIPRFYEP
                     TSGSITIDGVDTRTMTLGSLRSLIGIVSQDTVLFHDTVRNNLAYGMPDRYSDAEVEAA
                     ARAANAHAFISALPDGYATMLGERGTRLSGGQRQRIAIARALLLDPPMLILDEATSAL
                     DTESERLVQAAIDRLLQGRTVFVIAHRLSTVRHATQI"
     gene            complement(1809..3341)
                     /locus_tag="VLI40_13030"
     CDS             complement(1809..3341)
                     /locus_tag="VLI40_13030"
                     /inference="COORDINATES: protein motif:HMM:NF020249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU98150.1"
                     /translation="MDDESDLLESHCIFLRSKGYDVDCATNADDAVELLRRQTFDLLL
                     LDEQMPGTRGLEAYREIREIAPNLPVVMVTKSEEDSTLREAIGANIRDYLVKPVNPRQ
                     VLSVITRILDGPRIRSQAIARAFVERFRALELERARNLDWRGWIERYDELMRWDVDLA
                     EADERGLYDSLQGLYSDMHREFAEYIQTAYPAWLADLNGERPALSIDIVGEFLTPILE
                     REKAAVFIVVDCLRLDQWRVLEPLLAPYFEVETTHYYAVLPTATPYSRNSLFSGLFPG
                     EIATRFPEWWGAQDDESLNAHERELLEAHLRELRGETHVRYQKISTAGGSDDLERHMG
                     TAIAPEGVSAFVFNFVDLLTHGRSESQILYEVARDEIALRRLTRQWFERSALLSLLRE
                     ASARKVSVLLTTDHGSIHCNTPATVFAKRDASANLRYKFGEDLRAESADQALLFPNPD
                     TLKLPRRGHNVNTLLARNDCFFVYPTKLREYQSRYRGSFLHGGVSPEEVILPLALLTP
                     RR"
     gene            3453..3914
                     /locus_tag="VLI40_13035"
     CDS             3453..3914
                     /locus_tag="VLI40_13035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98151.1"
                     /translation="MTAIPAQPALSPVAPRTPLPSAPPYSLEPVLFASPALAECAASA
                     ALGGDREMALAAFITARLMLATIPPTLLPEAERVTRAERARSWLSALTMPQPARMAIL
                     RAIDASVPGGLDAAASLRELMQVLTGHLSPAALTELGMLVERLHLYYEQTP"
     gene            3930..4673
                     /locus_tag="VLI40_13040"
     CDS             3930..4673
                     /locus_tag="VLI40_13040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HSU98152.1"
                     /translation="MAGHSKWKQIKHYKAATDAKRGAHFTKLIREITMAAKLGGGDPA
                     GNPRLRTAIDTAKAASMPKENIERAVKKGTGELEGVEYQDVTYEGYGPGGVAIMIFTV
                     TDNPTRTVADVRHKLSHGGGNLGAANSVSFMFDRKGQIYIDATRYDEDALMEKALDAG
                     AEDFAREDDQYIVTTAPNSLEEVRGALESNGVEVAEAEVSYLPKTTVHVSGSAAASLL
                     KLLESLEDLDDVQRVVANFEMDADEMATA"
     gene            4679..>5095
                     /gene="ruvC"
                     /locus_tag="VLI40_13045"
     CDS             4679..>5095
                     /gene="ruvC"
                     /locus_tag="VLI40_13045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HSU98153.1"
                     /translation="MLGIDPGTAVTGYGVVRGERLGAASLIECGIIRTRPREPLPVRL
                     QEIYDGVTELIRTHRPDILAVEDVFYAHNVRTTIVLGHARGVILLAGQQAGIEIVEYP
                     PAEIKKTVVGNGAATKTQVQFMLTRLLRLKSVPAPSD"
BASE COUNT         1021 a         1640 c         1541 g          893 t
ORIGIN      
        1 tatctgtgtc gcgtgtcgca ccgtcgacag tcgatgcgca atgacgaaca ctgtccggcc
       61 ttggagcaac cggtcgatgg ccgcctgtac cagtcgctcc gattccgtgt cgagcgcgga
      121 cgtcgcctcg tcgaggatca gcatcggcgg atcgagcagc agggcgcgcg ctatcgcgat
      181 gcgctggcgc tggccgccgg agagtcgagt gccgcgctcg ccgagcatcg ttgcataacc
      241 gtcaggaagc gcgctgatga atgcgtgcgc atttgcagcg cgtgcagcag cctcgacttc
      301 ggcgtcgctg tacctgtccg gcatcccgta cgcgaggttg tttcgcacgg tgtcgtgaaa
      361 gagaacggta tcctggctca cgattccgat cagcgagcgc aacgagccca gcgtcatcgt
      421 ccgcgtgtcc acgccgtcaa tcgtgatgct gcccgaggtc ggctcgtaga atcgcggaat
      481 tagatcgacg agagtcgtct tgccggctcc gctcgcgccg accagtgcga tcacatcacc
      541 acgcgcggcc gtgaacgata catctcgcag aacgggcgtc tcgcggtggc caccctcgcc
      601 atcgtaggag aatccgacgt tgtcgaaccg tacgtcgcgg tgaaatccat cgacgtgaat
      661 cgtaccgcga tcgcgctcct gctccgacgg cgtgtccaga atgtcaaaca gccgctcggc
      721 ggacgccagc gacgattgcg ccgtcgcgcg caccgccgtc agctgcttga gcggctggag
      781 aagacgcagc acgaagacga ggaacgttat gagatccgcg ccggtcagcg agccatccac
      841 cagtacctga tgcgcgccga cccagagcag cgtcaccgcg atcaacatcc cgatgacctc
      901 ggtcaccggc ggcgccagga aggacaattt ggttagtcga acagtcgttc gagcataggt
      961 atcactcgcg ttcgtgaacc ggcgctcctc gaattcctcg gcgccgaacg acttgaccag
     1021 ccgaactccg gacaccgtct cctgcagcac gctcgccatc tcaccatgct gatttccacg
     1081 gcggcgattg ccgcggcgca gtttcttcaa caacggctgc agaacgagac tcaggatcgg
     1141 gacgatcacg agcgccatga tcgtcagccg ccacgagatg tcgaagagaa acgcgatggt
     1201 ggaaacgacc agtgccgcgg cctggagcga ctgtgtcact atctgcgtca gaacaaggcg
     1261 cgtctcgaac gtgtcgttca gaacgcgcga gatgatctgg cccgacttgg tacgcgtgaa
     1321 gtacgtgaga ggaagccgcg cgaggtgcct gtaaaccgag ttgcgcagat cgcgcgtcac
     1381 gtattcctgc agctcggcgc cgaactgccc gctcacccag acgaggaagt tcttcgccac
     1441 cacgacgatc atcacgacga agatgacgtt cctgagcgac cccatcttgt cgccgctcac
     1501 catcaactgc ccgacggtgg cgtgtagaag atcggatacc caccccgcct ttatgtccag
     1561 cgcgggccga tcgaacagcg tgttgaggaa cgggatgaga agagcgaccg agaacgcatc
     1621 cagcagtgcg gcggcgatgt tcgtggtgat cgctccgacc atccgccacg aatgcggctt
     1681 gaggaacggc agcagtcgcc gatatatgga gattccggca ccgagatccg ccgagcgtgt
     1741 gtccgccggc acggaaggcg gctgttcgga cgccggcgct gcggcggccg gatctacagt
     1801 gattgccact aacgtctggg tgtgagaagg gcgagcggaa gaatcacttc ttccggtgac
     1861 acgccgccgt gcagaaacga tccgcgatag cgactctgat attcgcgaag ctttgtcgga
     1921 tacacgaaga agcaatcgtt gcgtgcaagg agagtgttca cgttgtgtcc tcgccgcgga
     1981 agtttcaagg tgtccggatt cgggaacaac agcgcctgat ccgccgattc ggcgcgaaga
     2041 tcctcaccga atttatagcg gagattggcg ctggcgtcac gcttcgcgaa caccgtcgcc
     2101 ggcgtgttgc agtggatcga gccatgatcg gtagtcaaca gtaccgagac ctttcgcgcg
     2161 gacgcctctc gcaggagact gagcagcgcg gaccgttcga accactgccg cgtgagacgc
     2221 cggagtgcga tctcgtcgcg cgccacctcg tacaggatct gtgactcgct ccggccatgc
     2281 gtcaacagat cgacaaaatt gaacacgaac gcgctcacac cctcgggtgc gatcgccgtt
     2341 cccatgtggc gctcgaggtc gtccgagccg ccagcggtgg atattttctg ataccgcacg
     2401 tgcgtctcgc cgcgcagctc ccggagatga gcctccagaa gctcgcgctc gtgcgcgttg
     2461 agcgattcgt cgtcctgcgc tccccaccac tccggaaaac gcgtcgcaat ctcgcccgga
     2521 aagagtccgc tgaagagcga gtttcgcgaa tacggcgtcg ccgttggcag tacggcgtaa
     2581 taatgcgtcg tctcgacttc gaaatacggc gcgagcaacg gctcgagaac gcgccactgg
     2641 tccagccgaa ggcagtcgac cacgatgaac accgctgcct tctcacgctc gagaatcggc
     2701 gtgagaaatt caccgacgat gtcgatcgag agcgcgggac gctcaccgtt caggtccgca
     2761 agccacgccg ggtacgctgt ctggatgtac tcggcgaact cgcgatgcat gtcgctgtag
     2821 agtccctgca gggaatcgta cagtccacgc tcgtcggctt cagccaggtc cacgtcccag
     2881 cgcatcagct cgtcgtatcg ctcgatccat ccgcgccagt cgaggttccg ggcacgctcc
     2941 agctccagcg cacgaaaacg ctcgacgaaa gcacgcgcga tcgcctgcga cctgatccgc
     3001 ggtccatcca gaatgcgagt gattaccgac agcacctggc gtggattcac cggcttgacg
     3061 agataatcgc ggatgttcgc gcctatcgcc tcgcgcagag tcgagtcctc ctcgctcttg
     3121 gtgaccatca cgacaggcag attcggtgct atctcgcgaa tctcccggta cgcctcgagt
     3181 ccgcgcgtcc ccggcatctg ttcgtccagc aagagcaagt caaacgtctg tctgcgcaac
     3241 agctcgaccg cgtcgtccgc gttcgttgcg cagtccacgt cgtatccctt ggaacgcagg
     3301 aaaatgcagt gtgattcgag aagatcgctc tcgtcatcca cccacaggac agattttgct
     3361 ctcaaagcca tggcttcata aaggtatccg ccccgccctt cggacaagtg ttcaatgtag
     3421 ccgctcctct gttatgtgcc tagattccgc gcgtgaccgc catcccagcc cagcccgcgt
     3481 tgagcccggt tgccccgcgc acaccgcttc catccgctcc gccctactca ctcgagccgg
     3541 ttctattcgc gagtccggca cttgccgaat gcgcggcgtc cgccgccctt ggcggggatc
     3601 gagagatggc gctggcggca ttcatcaccg cacggttgat gctcgctacg atcccgccca
     3661 cgctgcttcc cgaagcggag cgcgtgacgc gtgccgaacg cgccagaagc tggttgtcgg
     3721 cgctcaccat gcctcagccc gcacggatgg caatactccg cgcgatcgac gccagcgtgc
     3781 caggcggcct cgacgcggcg gccagcctgc gcgagctcat gcaggttctc acgggacacc
     3841 tctctccagc agcactcacc gagctcggca tgctcgtgga gaggctccat ctatattacg
     3901 aacaaacccc ttagactgac gcaggatcca tggctggaca tagcaagtgg aagcaaatca
     3961 agcattacaa ggccgcaacc gacgccaagc gcggcgcgca tttcaccaag ctgatccgtg
     4021 agatcaccat ggctgccaag cttggcggcg gcgatcccgc aggcaatccg cgcctccgca
     4081 cggccatcga cacggcaaaa gctgcatcga tgcccaagga aaacatcgag cgcgccgtaa
     4141 agaaggggac gggcgagctg gaaggcgtcg agtaccagga cgtcacgtac gagggctacg
     4201 ggcccggcgg cgtcgcaata atgatcttca cggtgaccga caatccgacc cgcacggtgg
     4261 cggatgtacg gcacaaactg tcccacggcg gcggcaatct cggtgcggcg aactccgtgt
     4321 cgttcatgtt cgatcgcaag ggccagatct acatcgatgc aaccagatac gacgaggacg
     4381 cgctgatgga gaaggcgctc gatgccggcg ccgaggattt cgcgcgcgag gacgatcagt
     4441 acatcgtgac gacagcgccg aactcgctcg aggaggtacg gggagcactc gagtccaacg
     4501 gcgtcgaagt cgccgaggct gaagtgtcat atctccccaa gacaacggtc cacgtgtcgg
     4561 ggagcgcagc cgcgtcgctg ctcaagctgc ttgaatcgct cgaggatctc gacgacgtgc
     4621 aacgggtcgt cgccaacttc gagatggacg ccgacgaaat ggccacggcg tagtgctcgt
     4681 gctcggcatc gaccccggta ccgccgtgac cggctatggg gtcgtgcgcg gagagcgcct
     4741 cggcgctgcg tcgctcatcg agtgcggcat catccgcacc aggccgcgtg agccgctccc
     4801 ggtgcgacta caggagatct acgatggcgt cacagagctc attcgcactc accggcccga
     4861 cattctcgcg gtcgaggatg tcttctacgc gcacaacgtt cgcaccacga tcgtgctcgg
     4921 acacgcacgt ggagtcattc tgctcgcggg ccagcaggca ggcatcgaga tcgtggaata
     4981 tccgcctgcg gagataaaga agaccgtcgt cggaaacggc gccgcaacca agacgcaggt
     5041 gcaattcatg ctcacacgat tgctccgcct caagtcggtg cctgcgccgt cggac
//
LOCUS       DATIMD010000585         4929 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3708712, whole genome shotgun sequence.
ACCESSION   DATIMD010000585 DATIMD010000000
VERSION     DATIMD010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4929
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3708712"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..784)
                     /locus_tag="VLI40_13050"
     CDS             complement(86..784)
                     /locus_tag="VLI40_13050"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HSU98154.1"
                     /translation="MTESLARPSRRSLVDLVISRIQQQISLGVLEAGKRIPTEVELGD
                     VLGVSRTTIREAVVVLAHAGLLEVRQGDGTYVTASAPGRESLDQRLRRAAALEVYEVR
                     RPLEIETARLAAARRTVADVRRLRELLAERDKFRAAGESERAVDIDVEFHRTVAVASK
                     NAVLADVYNAFSVALRETLVHVANDNLTDVDTTDLHYALIDAIARGDEEAASATAARL
                     IDTDAESLRRAITP"
     gene            981..3566
                     /locus_tag="VLI40_13055"
     CDS             981..3566
                     /locus_tag="VLI40_13055"
                     /inference="COORDINATES: protein motif:HMM:NF039587.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5916 domain-containing protein"
                     /protein_id="HSU98155.1"
                     /translation="MTAVQRLGTIKVDGRLDDAAWLRAMPATGFRQQDPDEGRPAAES
                     TQVRFVYDGDALYVGARMFDSRGAAGVRTRLARRDEQPGGDYLMLVLDTYHDHAGRTV
                     LRINPSGVQYDALALGRADPDPGWNAVWEAATRIDSLGWTAEFRIPFSQLRLAGSGAQ
                     TWGLQIWRYEDRRKETSQWAFWTKHEPGGPAYFGHLTGLAPEQDVVTVEASPYVALGI
                     APRVPDSGSGTAVYRTHETHAMGADVLLRAPGTSATVTLNPDFGQVEVDPAVLNLTAS
                     ETFFPEKRPFFVQDAGIFGFGAIDCAICAYASPLDLYYSRRIGHPPSLHPSGLVIDAP
                     SATRILGAARATFQSRNGWTAGALVARTDRETATVLDSSGQTESVAVEPSTTYLIGRA
                     EKSATSGAGAVGVIGTLTDRSMTRRSVDALGSLLAARAATVGVDGERWWSNHTYRAGF
                     TSAVSSIAGDSLALQHIQTSSVHYFQRPDRHSTAGLFDSRYDPGRTELNGYASVARVA
                     KEGGVWTWEAIAELVSPGFEVNDLGFMPIAGTQWILANVRRNFTVPTSWYHSAQLVAG
                     TEQRRNFDGDATGRAYHVSASVVTPSYWTADAIFIHQLAHYDDRMLRGGPTVAVGAGD
                     SVGFDVESDTRHDVSIADTTWWSSDRSGNGSAGIAQGLSLRPTDGTSLSASVRAAWLN
                     AGAQFVASVPNPGTQTQKRYVVASLTQRTVALEFRAATAITRTLSLDAYLQPFVTAGV
                     YRDFGEFAGLRSDTRLIYGRDMGSLRRTLNGDGNWISIAPGDGYGTPFSIRDPTGGTR
                     SLHGTAVLRWEYRPGMALYLAWTQTRSDLAPDGALDLQRDGRALLAAHPENALLFKVA
                     YLMGR"
     gene            3621..4025
                     /locus_tag="VLI40_13060"
     CDS             3621..4025
                     /locus_tag="VLI40_13060"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HSU98156.1"
                     /translation="MTRPVIPLAIIAAVVTTVAFTRTSLAVQHLPGTIVTVRMVRDSA
                     GMRFSPSKIVAHPGDTLRFVNGAGRHNVDFVVDSNPRNVVLPRATPLLEKEGATVDIP
                     VDLPPGRYYIQCDPHAEMGMVGHVIVERKRAR"
     gene            complement(4094..4561)
                     /locus_tag="VLI40_13065"
     CDS             complement(4094..4561)
                     /locus_tag="VLI40_13065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98157.1"
                     /translation="MPAQLLAQSIVPAGQPVAGISCDAQEGQRIHIHQHLLILDHGKS
                     VAIPANVGQPAGKPCIYWLHTHTPDGVIHIEAPKDRSFTLADFFAVWGQPLSRSVAAT
                     ASARKGQYLKVWVDGKPFMGDPGSIPLMAHTDIVIEAGPPFPRPPRFTAWDGL"
     gene            4734..>4929
                     /locus_tag="VLI40_13070"
     CDS             4734..>4929
                     /locus_tag="VLI40_13070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_267462181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDCCVxC domain-containing (seleno)protein"
                     /protein_id="HSU98158.1"
                     /translation="MAPLQTTSVLTCPECSRAEVFEMPADACVFFHQCAGCGTVLRPR
                     AGDCCVFCSYGSVPCPPVQAG"
BASE COUNT          898 a         1518 c         1561 g          952 t
ORIGIN      
        1 cgcgagcaac gtcaggcaag ccatgcgcat gatcactgcc gatcgcggat atgcgctggc
       61 cgtcttcatc gtggttggtg cgattctacg gtgtgatcgc acggcggagg ctttcggcgt
      121 ccgtatcgat caggcgcgct gccgtggcgc tcgcggcctc ctcgtcgccg cgtgcgatgg
      181 catcgatgag tgcgtagtgc agatctgtcg tatcgacatc cgtgagattg tcgttcgcga
      241 cgtgaaccag cgtctcgcga agcgcgacgc tgaacgcatt gtagacatcc gccagcaccg
      301 cgttcttgct tgcaacggcg accgttcggt ggaactccac gtcgatgtcc acagcacgtt
      361 ccgattcccc cgctgcgcga aacttgtcgc gctcggcgag cagctcgcgc agccgccgta
      421 cgtcggccac cgtccggcga gccgcggcga gccgcgcggt ctcgatctcg agggggcgcc
      481 gtacctcgta gacctcgagc gcggccgcac ggcgcagccg ttggtccagc gattcacggc
      541 ctggtgcgga cgccgtgaca taggtgccat ctccttgccg cacttcgagc agaccggcgt
      601 gagcaagcac aaccacggcc tcgcgaatcg tcgtacggct gactccgagc acgtctccca
      661 actcgacttc ggtgggaatg cgctttcccg cctcgagcac ccccagggag atctgttgct
      721 ggatccggct gatgaccaga tcgaccaaac tccggcgcga agggcgggcc aaggattccg
      781 tcatatccat tcatagtacg aatcacttgc cattaacgca atggaaccac acaaaatgag
      841 gaaatcgcgg attgttgcaa acatcatacg tatgatgtat tttgccttat atgtttcgat
      901 ccatgctttc cttgatcgcg gtatgcgcgg ccggaacccc ggttctgggg caggcggctc
      961 cgggatcgga tgcgccgcag gtgacggccg tccagcggct cgggacaatc aaggtggatg
     1021 ggcgcctcga tgacgcagcc tggctcagag caatgcctgc aaccggtttc aggcagcagg
     1081 accccgacga aggcaggccg gccgcggaga gcacgcaggt tcgcttcgtc tatgacggtg
     1141 acgcgctgta tgtaggcgct cggatgttcg atagccgagg cgcggcaggt gttcggaccc
     1201 ggctggcgcg ccgtgacgag cagccgggtg gcgactactt gatgctcgtg ctggatactt
     1261 atcacgacca tgccggccgg accgtgctac gcatcaatcc atccggcgtg cagtacgacg
     1321 cgcttgctct cgggcgagcc gaccctgatc caggctggaa tgcagtatgg gaggcggcga
     1381 cacgcatcga ttcgctcggc tggaccgcgg agtttcgcat tccattttcg cagctccggt
     1441 tggcaggttc cggtgcgcag acatggggac tccagatctg gcgttacgag gatcggcgga
     1501 aggagacgtc gcagtgggca ttctggacca agcacgagcc aggcgggcct gcctacttcg
     1561 gccacctgac cggactcgca cccgaacagg atgttgtcac tgtcgaggcc tcgccctacg
     1621 tcgcccttgg catcgcaccg cgtgtccccg acagcggaag cgggacagca gtctaccgaa
     1681 cgcatgagac gcacgcgatg ggcgctgacg ttctgcttcg cgcccccggg accagcgcta
     1741 ctgtgacact caatcctgac ttcggccagg tggaagtgga tcctgcggta ctcaacctca
     1801 cggcatcgga gacgttcttt ccggagaagc gccccttttt cgtgcaggat gccggaattt
     1861 ttggtttcgg cgcgatcgac tgcgcaattt gcgcctacgc gagcccgctc gacctctact
     1921 actcgcggcg catcggccat ccaccgtcgc tgcacccgtc cggcctcgta atcgatgccc
     1981 cgagcgcgac tcggatactg ggtgctgcgc gcgcgacatt tcaatcgcgc aacggctgga
     2041 ccgcaggcgc gcttgtcgcg cgcacggatc gcgagacggc gaccgtactc gattcgtccg
     2101 gccagacgga gagcgtagct gtcgagccat cgacgacata tctgattgga cgcgcggaaa
     2161 agagtgcgac gtcgggagcc ggcgcggtgg gcgtcatcgg cacactgacg gaccgcagca
     2221 tgacgcgccg aagcgtcgac gcgctcggct cattgcttgc tgcgcgcgca gcaaccgtgg
     2281 gtgtggacgg cgagcggtgg tggtcgaatc atacatatcg tgccggcttc acttcggcgg
     2341 tgtcatcgat tgccggcgat tcactggcgc tgcagcacat acagacgtcg agtgtgcact
     2401 atttccagcg acccgatcga cattcgactg cggggctctt cgactcgcgc tacgaccccg
     2461 gccgcacgga gttgaacggc tacgcctccg tcgcgcgcgt tgcgaaggaa ggcggcgtgt
     2521 ggacatggga ggcgatcgct gagctcgtga gtcccggctt cgaggtgaat gacctggggt
     2581 tcatgccgat cgccgggacc cagtggatac tggcgaatgt acgccgcaac ttcacagtac
     2641 cgacctcgtg gtatcactct gcccaactcg tcgctggcac cgaacagcgg aggaatttcg
     2701 acggcgatgc gaccggacgc gcataccacg tgtccgcatc ggtcgtcacg ccctcgtact
     2761 ggacggcaga cgcgatcttc atccaccaac tcgcgcacta cgacgatcgc atgttgcgtg
     2821 gcggtccgac cgtggccgta ggtgccggcg acagcgtggg cttcgatgtc gagagtgaca
     2881 cgcgccacga tgtttcaata gcagatacca cgtggtggtc gtccgatcgt agtggcaacg
     2941 ggtcggctgg aatcgcgcaa ggtctttcac tgcgcccgac cgacggaaca tcgttgagtg
     3001 cgagtgttcg cgccgcgtgg ttgaatgcgg gcgcgcagtt cgtcgccagc gtgccgaatc
     3061 caggaacaca aacacagaag cggtacgtgg tcgcatcgct gacgcagcgc acagtcgcgc
     3121 tcgaatttcg tgccgcaacg gcgatcacac gcacgctatc gctggacgca tatctgcagc
     3181 cttttgtgac cgctggtgtg taccgcgatt ttggcgagtt cgcaggactg cgcagcgaca
     3241 cccgtctgat ctacggccga gacatgggct cgctgcgacg cacactgaac ggcgacggaa
     3301 actggatcag catcgctccc ggcgacggtt acggtacgcc gttcagcatt cgcgatccaa
     3361 ccggcggaac gcgatcgctg catggtactg cggtgttgcg ttgggagtac cggccgggca
     3421 tggcgctcta tctggcgtgg acgcagacgc ggtcggatct cgcgccagac ggcgcgctgg
     3481 atctgcaacg cgacggcagg gcactcctcg cggcgcatcc agagaatgca ctgctgttca
     3541 aggtcgccta tctcatgggg cgatagcgct gtccgccggt gaatgccggc ttcctctttc
     3601 accaatgctg aggccttaac atgactcgac ccgtgattcc actcgccatc atcgccgctg
     3661 tcgtcactac cgtcgcgttc accaggacgt cgctcgcggt acaacatctc cccggtacta
     3721 tcgttacagt ccggatggtt cgtgacagcg cagggatgag attcagtccg tcgaagatcg
     3781 tggcgcatcc gggcgacaca ctacgttttg tgaacggtgc gggacgacac aacgtggact
     3841 ttgttgtcga ttccaatcca cgaaatgtcg tattgccacg cgcgacgccg ctgctcgaga
     3901 aggaaggcgc aaccgtcgac attcccgtcg atctaccgcc cggtcgctat tacatccagt
     3961 gcgatccgca tgcggagatg ggcatggtcg gtcatgtgat agttgagcgc aagcgcgcgc
     4021 ggtgagcgct gacgactcgc atgcatcgca ctcgtggctg ctcgttcaga tcgctccgac
     4081 gcagctcttc atcctacagt ccatcccacg ctgtgaacct cggcggcctg gggaagggag
     4141 gaccggcctc gatgacgatg tcggtatgag ccatgagcgg aatggaaccc ggatctccca
     4201 tgaacggttt gccgtcgacc cataccttga gatattgtcc cttcctggca ctagcggtgg
     4261 cggcgacgct gcggctcagg ggctgtcccc acactgcaaa gaagtcggcc agggtgaagg
     4321 accgatcctt cggtgcctcg atgtgaatga ctccgtccgg agtgtgcgta tggagccagt
     4381 agatgcacgg cttgccagct ggctgaccga cgttcgccgg tattgcgacc gacttgccgt
     4441 ggtccaggat cagaagatgc tggtgtatgt ggatccgttg tccttcctgc gcgtcgcacg
     4501 agattccagc aacgggttgg ccggccggga cgatggactg cgcgagcagc tgtgctggca
     4561 cgacgcccag aacgcacgag agtgttaacg cgcatgtagt cgcgatagtc agcgaccgac
     4621 ttgcaagggt gacgtgacgc agcggcgaca tgaaatccag agcccggata agtttgtgga
     4681 tggggccgac tcccagagtc gttacagcat cataaagtac agctcgcaat cctatggcac
     4741 cattgcaaac gacatcagta ctgacctgtc ccgaatgctc ccgcgctgag gtgttcgaga
     4801 tgccggccga cgcctgcgtc tttttccacc agtgcgccgg atgcggtacg gtgcttcgtc
     4861 ccagagcggg tgactgctgc gtcttttgct catacgggtc ggtaccgtgt ccgccggttc
     4921 aggcaggaa
//
LOCUS       DATIMD010000586         4602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2841759, whole genome shotgun sequence.
ACCESSION   DATIMD010000586 DATIMD010000000
VERSION     DATIMD010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4602
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2841759"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..710
                     /locus_tag="VLI40_13075"
     CDS             <1..710
                     /locus_tag="VLI40_13075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98159.1"
                     /translation="TYMLKILRVITLASLVTAPSMLAAQVVVGHTPETSPYRDITASQ
                     RLTIFGGYFAAQKDEIGATPQSGASIGLRYSIPVAGPADFYARFERVSSHREAFNPLK
                     PAETRSLGTQNLGLYIADLGFDFNLTGRRTWHGLVPLLGFGLGVTSAPGTTTNDPYDF
                     GTQFSFSLEGGIRFNPTNSYEIRLNAKPTFYQNHYPVQYFGKPAGSTPLLEASTARSG
                     FRHGIDYSAGLSVPLFR"
     gene            757..1275
                     /locus_tag="VLI40_13080"
     CDS             757..1275
                     /locus_tag="VLI40_13080"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HSU98160.1"
                     /translation="MPRDFEDIFDTEDMDPEELRRLVRETLRDNRSIDPLDITVHVRH
                     GKVILAGRVGTDTEKRIAERVVGDRIGLTNLESQLVVDPIRRATSPEAADENVNDEER
                     HEGLLLGDAPRSNTDTSDHLAEHAEDELLGTVDRTEAIEDGIPWVPPESPTPEGTDEA
                     GFPPRDANLDSF"
     gene            1317..1739
                     /locus_tag="VLI40_13085"
     CDS             1317..1739
                     /locus_tag="VLI40_13085"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: protein motif:HMM:NF013411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070497 -
                     6-carboxy-5,6,7,8-tetrahydropterin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HSU98161.1"
                     /translation="MPTCTLTRRVKFAAAHRYRRPEWDDARNEATFGACAWPSYHGHS
                     YTCDITVAGDIHPLTGFIVDLGKLDAILRREIVQRFDHRNINIDVSEFADGRLIPSGE
                     NLARFILDRVQNALNTDARVVSVTIAEDDTLSATYAAD"
     gene            1813..3123
                     /gene="dacB"
                     /locus_tag="VLI40_13090"
     CDS             1813..3123
                     /gene="dacB"
                     /locus_tag="VLI40_13090"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HSU98162.1"
                     /translation="MPLALAAAVAAATACAPAARTGPTPATAHGPAALKARIDTWIGN
                     PEFRTAEWAILVVNPKRGDTVYAHDPALLMVPASNMKIITSSVALTQLGPDFRFTTTF
                     ATHGTLTNGVLNGDLVVTGRGDPTLSDHMRGNARAAMDTLADSIVAHGVREITGHIYS
                     GADNFPGPAVGAGWDWDDLSSPDGAGVDELLFNEGMSRIVVHGPAGDSTVKSAPATVP
                     TQDYLRELQLALETRGVHATLGVGESVVPRDGVPLDTLFVVKSVPLSQILPYFLKPSQ
                     NQMGEVLMRTLGLERTGVGTADSGIAVAARQLTAWGIPRDGYQMHDGSGMARADLISP
                     ETIVRIFDRMQTNPNFTTFYNALPIAGVDGTIARRMIGTPAADNVHAKTGSLRWVRSL
                     SGYVTDADGERLIFSVLANKWTTPASAVTMTADSIAAALASYRR"
     gene            3153..4400
                     /gene="glp"
                     /locus_tag="VLI40_13095"
     CDS             3153..4400
                     /gene="glp"
                     /locus_tag="VLI40_13095"
                     /inference="COORDINATES: protein motif:HMM:NF045515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990586 - divisome complex [Evidence
                     IEA];
                     GO_function: GO:0061599 - molybdopterin molybdotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gephyrin-like molybdotransferase Glp"
                     /protein_id="HSU98163.1"
                     /translation="MSQGAVSAIEASEHILASVGCMTVERVPLSSALGAVLAEPVVAR
                     ASIPPWRASSMDGYAVRASDITSIPCTLRVIGEVAAGREAPAAINSGEAVRIMTGASV
                     PAGADTVIRIEDTDAGSDFVEIRNPRDARRNVRPLGEDFLAGDVILDTGDYLGPAAIG
                     VLASSGVATVATYRQPTVSIVSSGDELVRVEGFDAVMSGHRIVSSNSYSLPAMVREAG
                     GRPRDGGITRDDPLALRNAIEGAMACDLLITSGGVSVGDHDFTRTVMKQMGVDIKFWR
                     ARIRPGGPIVFGIIDGRPWIGLPGNPVSAMVTFELFVRPAILKMLGEKLIFPATRLVT
                     LDEHISLTGDLTHYLRVVLTQRDGVDHARLTGTQSSGALTSMLRANALLIVPEGRREC
                     QPGEQLLAMPLRSSVFRSATFPA"
BASE COUNT          886 a         1514 c         1365 g          837 t
ORIGIN      
        1 ttacgtacat gttaaagatt ctccgcgtta tcaccctcgc ctcactggtc accgccccgt
       61 ccatgctcgc ggcccaggtc gtcgtgggtc acacgcccga gacgagccca taccgcgaca
      121 tcacggcttc gcagcgcctg acgatattcg gcggctattt cgccgcgcag aaggacgaga
      181 taggggcgac gccgcagagt ggcgccagca tagggctccg ctactccatt ccggtggccg
      241 gcccggccga tttctatgcc cgttttgagc gcgtcagctc gcatcgcgag gcattcaacc
      301 ccctcaaacc ggccgagacc cgctcgcttg gaacacagaa cctcgggctg tacatcgccg
      361 acctgggctt cgatttcaat cttacgggtc gccggacctg gcatggcctt gtcccgctgc
      421 tcggtttcgg cctgggcgtc accagcgcgc ccggcacgac tacgaacgac ccgtacgact
      481 tcggaaccca gttctccttc tcgctcgagg gagggattcg cttcaacccg accaattcgt
      541 acgagatcag attgaacgcg aagccgacgt tctaccagaa ccactacccc gtgcagtact
      601 tcggcaagcc cgctggcagc acccccctgc tggaagcctc caccgcgcgc agcggcttca
      661 gacacgggat cgattacagc gccggccttt ccgtgcctct gtttcggtag aattgcgggc
      721 atccgccttg cacggtgagc acttgggagg ctcacaatgc cacgcgactt cgaagatatt
      781 tttgatacgg aagacatgga ccccgaagag ctcaggcgcc tcgtgcgcga gactcttcgg
      841 gacaatcgat cgatcgatcc gctggacatc acggtccatg tccgccatgg gaaggtcatt
      901 ctcgctggcc gcgtcgggac ggatacggaa aagcggatcg ccgagcgcgt agtcggcgac
      961 aggatcggcc tgaccaacct cgagagccag ctcgtggtcg acccgatccg ccgcgccacg
     1021 agcccggaag cagccgacga gaacgtcaac gatgaggagc gccatgaagg cctcctgctc
     1081 ggcgacgctc cgcgctccaa taccgacacc tccgaccatc tggcggagca cgccgaggac
     1141 gagctactcg gcactgtcga cagaacggaa gcgatcgagg acggtattcc ctgggtacct
     1201 ccagagagcc cgacccccga aggcaccgac gaagccggct ttccaccgcg agacgcaaat
     1261 ctggattcat tttagcattc gttttaatcg cgcccggggt gcaaatttga tggcgtatgc
     1321 ctacatgcac cctgacacgc cgcgtgaaat ttgccgcggc acaccggtat cgtcgtcccg
     1381 aatgggacga cgcgcggaac gaagcaacct tcggcgcctg cgcgtggccc agctatcacg
     1441 gtcacagcta cacgtgtgac atcacagttg ccggcgacat ccatccgctc accggtttta
     1501 tcgtggatct cggaaaactc gacgccattc tgcggcgcga gatcgttcag aggttcgatc
     1561 accgcaacat caacatcgac gtttccgagt ttgcagacgg acgcctgatc ccctccggtg
     1621 agaatctcgc ccgcttcatt ctcgatcgcg tgcagaatgc cttgaatacc gatgcgcgcg
     1681 tcgtttcagt caccatcgca gaggacgaca cattgtcggc gacctatgca gccgattgac
     1741 cgcgcaccga gcgcgacatt gaacgcgagc agcgcgtcca tgcgcatacg catgcatcga
     1801 aaggcccgct tgatgccact tgccctggca gctgccgttg cagctgcaac agcatgcgcg
     1861 ccggccgcgc gcacgggacc gacaccggca acggcacacg gtccggccgc tctcaaagcg
     1921 cgcatcgata cgtggatcgg aaacccggaa ttccgaaccg ccgagtgggc catcctcgta
     1981 gtgaatccca agcgcggtga tactgtctac gcgcacgacc ccgcgctcct gatggtcccg
     2041 gcgtcgaaca tgaagatcat cacatcttct gttgcgctca cgcagctcgg ccccgatttt
     2101 cgcttcacga cgacatttgc aacacacggc acgctcacaa atggcgtcct gaacggtgat
     2161 ctcgtggtaa ccggccgcgg tgatcccacg ttgagcgatc acatgcgcgg aaatgcgcgc
     2221 gcagcgatgg atacactcgc ggattcgatt gttgcacacg gcgttcgtga gatcaccgga
     2281 cacatctact cgggagccga taactttccc ggccctgcgg tgggcgctgg ctgggattgg
     2341 gacgatctca gctctccgga cggcgccggc gtcgacgagc tgctcttcaa cgagggaatg
     2401 tcccgcattg tcgtgcacgg gcccgcaggc gacagcactg tgaagtcagc gcctgcgact
     2461 gtccccacac aggactacct gcgcgagctg cagctggcgc tcgagacgcg cggagtacac
     2521 gcgacgctgg gcgttggaga aagcgtcgtg ccacgcgacg gagtcccgct cgacacgctg
     2581 ttcgtcgtga agtcggtccc gctcagccag attcttccat acttcctcaa gccgtcgcag
     2641 aaccagatgg gcgaggttct catgcgcacg ctcggcctcg aacgaaccgg agttggcacc
     2701 gcggacagtg gcatcgccgt agccgcccga cagctcacgg catggggcat cccgcgcgac
     2761 ggctaccaga tgcacgacgg aagcggaatg gcgcgcgccg atctcatttc tccggagacg
     2821 atcgtgcgca tattcgaccg gatgcagacc aaccccaatt ttacgacgtt ctacaatgcg
     2881 cttccaatcg ccggtgtaga cggaaccatc gcgcgacgca tgatcggaac tccggctgct
     2941 gacaacgttc acgccaagac gggctcgctg cgctgggttc gctcgctctc gggctatgtc
     3001 accgacgccg acggcgagcg gctcatcttc agcgtgctcg ccaacaagtg gactacgccc
     3061 gcatcagcag taaccatgac agccgattcg attgccgcgg cactggcgtc gtatcgcagg
     3121 tgagcagcac gcgatcagca agtgagcggc aggtgtccca aggcgccgta agcgcaatcg
     3181 aggcctccga acatatcctc gcatcagtcg ggtgtatgac ggtcgagcgc gtcccgcttt
     3241 cgtccgcatt gggcgccgtg ctcgccgaac ccgtcgtcgc acgcgccagc attccgccgt
     3301 ggcgcgcttc ctcgatggat ggatacgcgg tgagagcaag cgacatcacc agcattccgt
     3361 gcacgctgcg cgtgatcggt gaagttgcgg ccggccgcga agcgcccgca gccataaatt
     3421 ctggagaagc ggtccgaatc atgaccggtg cctcagtccc cgccggcgcc gataccgtca
     3481 tacgcatcga agacaccgac gcaggatcgg acttcgtcga gattcgcaat ccgcgtgacg
     3541 cgcgccgcaa cgtgcggcct ctgggcgagg atttccttgc gggagacgtg attctcgaca
     3601 cgggcgacta cctcggtccc gcggcgatag gtgtgcttgc ctcatcgggt gtcgcgaccg
     3661 tcgcaacata tcggcagccc accgtgtcca tcgtttcgtc aggtgacgag ctcgttcgtg
     3721 tcgagggatt tgacgccgtg atgagcggcc accgcatagt gtcttcgaac agctactccc
     3781 ttcccgccat ggtacgagag gccggcggac ggccgcgcga tggcggcatc acgcgcgacg
     3841 atccgctcgc attgcgcaac gcgatcgagg gtgcgatggc ctgtgacctc ctgattacga
     3901 gcggaggagt ttctgttggt gatcatgatt tcacacgcac agtgatgaag cagatgggcg
     3961 tcgacatcaa gttctggcgc gcgcgtatca ggcccggcgg ccccatcgtc ttcggcataa
     4021 tcgatggcag gccgtggatc gggttgcccg ggaatcctgt ctcagcgatg gttacgttcg
     4081 agctgttcgt ccggccggcg atcctcaaga tgctgggcga gaaactgatc tttccggcaa
     4141 cacggctggt gacgctcgac gagcacattt cgctcaccgg cgacctgaca cactacctgc
     4201 gcgtggtact cactcagcgg gacggcgtgg atcacgcgcg gctcaccggc acacagagct
     4261 ccggcgcgct gacatcgatg ctgcgcgcga acgcgctgtt gatcgttcca gagggtcggc
     4321 gcgaatgtca gccgggcgag caactgttgg cgatgcccct gcgcagctcg gtctttcgct
     4381 ccgcgacttt tccagcgtga tacgtccagc gtgatacgtc cagcgtgata cgtccagcgt
     4441 gacacatacc acgtgacaca taccacgtga cacactcgct caccggcgcc gagctcgtcg
     4501 ctgatctgga acgccgcttc gtcactgtca atgacgatgt ccgcgttggc cggagagaca
     4561 tcaacatcct gcgcccgcgc agcgccgaag acctgatcag cg
//
LOCUS       DATIMD010000587         6660 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4288791, whole genome shotgun sequence.
ACCESSION   DATIMD010000587 DATIMD010000000
VERSION     DATIMD010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6660
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4288791"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..399
                     /locus_tag="VLI40_13100"
     CDS             <1..399
                     /locus_tag="VLI40_13100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98164.1"
                     /translation="KLLDARDAAPAQPLSQVTLNVDNAAGGSDKITVQLRAGVVDTAI
                     SVGDPNRADKMSLRVGELQHALEQHGLDATAINVASTSAGSGPGWNPRQGSDQSAQNG
                     RPSLNHRDNRQDADATRQRSRREQQGGRQK"
     gene            396..719
                     /locus_tag="VLI40_13105"
     CDS             396..719
                     /locus_tag="VLI40_13105"
                     /inference="COORDINATES: protein motif:HMM:NF015896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook capping FlgD N-terminal
                     domain-containing protein"
                     /protein_id="HSU98165.1"
                     /translation="MITAPIGGIAPMRDTNAPNSSSDSASNAITNASGGAMGKDQFVQ
                     LLVTEMKNQDPMNPMDGKDLAAQLAQFSSVEQLMNINTKLDNFATLFAPTAPASSSSS
                     TTQGA"
     gene            762..2102
                     /locus_tag="VLI40_13110"
     CDS             762..2102
                     /locus_tag="VLI40_13110"
                     /inference="COORDINATES: protein motif:HMM:TIGR03506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HSU98166.1"
                     /translation="MDRSLFSAVSGLRNNQTRMDVIGNNIANVNTTAFKASRANFTES
                     FSQVLSGATRPGTTTGGINSMAVGLGSQLSSIDTVFTQGNRETTGVPTNLAIQGNSFF
                     VVSNGAQNLFTRDGNFKWDSNGTLVAGNGGIVQGLMAKNGVLGGGLTGISVPIGQTTP
                     AAATTKATVAGNFNSEAPNIVAVDPNNPTAAELADPVNAGSKVETTLGVFDSLGSKHE
                     LTLVAWKTGQNTWECKIDPTSLNYDTTQPYTFGPGAQSSPAAATTPWQFTFKSDGTID
                     TANSNLPNVTFTPAGGGAAVSLKLDPGAGSTGVTSLAVGNSAVLRDQNGYASGVLQSV
                     SIGQDGVVTGAFSNGTNQTLAQIALADFNNPEGLDQAADSMYTVSANSGTPLIGYSGK
                     DTTSTIASGALEMSNVDLAQEFTDMIITQRGFEANGKMITTSDQMLQTLINMRQ"
     gene            2364..2906
                     /locus_tag="VLI40_13115"
     CDS             2364..2906
                     /locus_tag="VLI40_13115"
                     /inference="COORDINATES: protein motif:HMM:NF015693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated FliL family
                     protein"
                     /protein_id="HSU98167.1"
                     /translation="MADEKSPEPEKAAPPAAKSGMAKLLPLIGGVVGGIALGGILGFT
                     LLGPKLSHKTATTPAATESAKAATKEGGPEVKKGDAPPPIYQVDNLVMNPAGSGGSHF
                     LLMSVALQLKDASSLETIKGRDAELRDAILRLFSRKTSDQIADISARDQFGVELMGVL
                     DRMFGPGTVAKIYFPQFVIQ"
     gene            2924..3991
                     /locus_tag="VLI40_13120"
     CDS             2924..3991
                     /locus_tag="VLI40_13120"
                     /inference="COORDINATES: protein motif:HMM:NF014235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliM/FliN family flagellar motor switch protein"
                     /protein_id="HSU98168.1"
                     /translation="MASGTLSQSEIDRLLGGASNVPFPGASEESPVQMYDFRRPHRVS
                     KERLRTLEAIYERLVKSLESWVIGRVRGQIEMRLQGVEQFSFGEFTLSLPTPCASFIC
                     EINDSGGQLGVVDIGEEFAFYMVDRLFGGSGQQMSASRPLTRVERMALRGLVDKVNSL
                     LAEVWSDYITMSLEISSFESFPDILLQSANRDDPVLVANIEVTAGDVSSLMLVCLPFA
                     VLDKFFTNTATRSFANATGSEHERAVSRALAEHSLRATRVNVSARLPEFRMSMRDIAS
                     LSHGGVITTALPSNSPIRVMVGDQERFAGTAGRVGNKLAIRLEGALTQTGEVRGAAPV
                     VPQFNASVITEALQTQPISAE"
     gene            4005..4334
                     /gene="fliN"
                     /locus_tag="VLI40_13125"
     CDS             4005..4334
                     /gene="fliN"
                     /locus_tag="VLI40_13125"
                     /inference="COORDINATES: protein motif:HMM:TIGR02480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HSU98169.1"
                     /translation="MNAAAGAESLNAVDAGFPGANNEVPISMLLDLTLPISIELGRTS
                     MTVQDILRLGRGSVIQLDRLAGEPIDVFVGDRRFAEGEVVLLGETFGVRITRILPRAN
                     AVEEIAA"
     gene            4331..4834
                     /locus_tag="VLI40_13130"
     CDS             4331..4834
                     /locus_tag="VLI40_13130"
                     /inference="COORDINATES: protein motif:HMM:NF016250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliO"
                     /protein_id="HSU98170.1"
                     /translation="MSAPSFLMVMAMLAIVLGAMGVAMRVLRRYAMTNASRKGSVKME
                     IIQRLSLGQRQGLAVVRIGTRVLAVSMGEGGVHQVAELSDADLAPTDAAKATGSAPIH
                     ALADGIRKLVLIRGNGEATAKYTAGGVLDGAAASRSSKDGKRISYVAPMEDFQAVLSM
                     AMAGGTK"
     gene            4834..5949
                     /gene="fliP"
                     /locus_tag="VLI40_13135"
     CDS             4834..5949
                     /gene="fliP"
                     /locus_tag="VLI40_13135"
                     /inference="COORDINATES: protein motif:HMM:NF009438.0"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HSU98171.1"
                     /translation="MKFRGVVIGLATLLALAPASAPLFAQAPAQPAAQPAAQPAAQGA
                     NAAAGGAGPTGSSVANTLQSVANSTNAAAARPIAQQPNAIPQPPKIAAPAANAAAGGT
                     AGTRAARAGAQPAGPKTATTATAAAANAPLTPSPSLDNMVSKLTPQMDLRVGSGKEDG
                     GLRLSGTVGIVVMMGLLTLLPTLVLLMTGFTRILIVLNFLRQALGTQNAPPAQMVAAL
                     SLILTGFVMAPTLNKVNETALQPWMNGKIEQGEMMKIAVVPFREFMLAHTRDHDLQVF
                     IDMSSGVAPRNEDEIPLVTLVSAFATSELRTAFQIGFALFLPFIIIDIVVSSVLMSMG
                     MFMLPPAMISLPFKLLLFVLVDGWTLVVQSLVTSFRV"
     gene            5953..6222
                     /gene="fliQ"
                     /locus_tag="VLI40_13140"
     CDS             5953..6222
                     /gene="fliQ"
                     /locus_tag="VLI40_13140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HSU98172.1"
                     /translation="MSHVLVVDLARNMIMTALLIASPMLVVALAVGLVVSIIQAVTQI
                     QEQTLSFVPKLVAVAVTFIIALPWIIQIMVKYTSELFRSLPSMIS"
     gene            6219..>6660
                     /locus_tag="VLI40_13145"
     CDS             6219..>6660
                     /locus_tag="VLI40_13145"
                     /inference="COORDINATES: protein motif:HMM:NF013478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HSU98173.1"
                     /translation="MTDVRPFDLFAPGSGTVAVLVALRLTGLMLIAPVFSAATVPVKW
                     RTSLLIVLTIVIQPIAYANMRVIPQITPSTAMGELLVGFGIGLGAALLVGAAESAGDL
                     LAIQIGLSGASLLDPLIKQTSPVLANFLSLFAITILLALNVHLGM"
BASE COUNT         1342 a         2048 c         2041 g         1229 t
ORIGIN      
        1 aagctgctgg atgcacgcga tgcagcgcct gcacaaccgc tctcgcaagt gacactgaac
       61 gtcgacaacg ctgccggagg ttccgacaag atcacggttc aactccgtgc cggcgtcgtc
      121 gatacggcaa tatcagttgg agatccgaat cgcgcagaca agatgtcgtt gcgcgtcgga
      181 gaattgcagc atgcattgga gcagcacgga ctggatgcaa cggcaatcaa tgtcgcatca
      241 acgtccgctg gctcagggcc gggatggaac ccgcgccaag gcagcgatca gagtgcccag
      301 aacgggcgcc cttcgctcaa tcaccgggac aaccgacagg acgcggatgc gacccgacag
      361 cgctctcgta gagagcagca gggaggaaga cagaaatgat taccgcgccc attggcggca
      421 tcgcaccgat gcgggacacg aacgcaccga actcctcgtc ggactcggca agcaacgcga
      481 ttaccaacgc atcaggtggt gcgatgggaa aggaccagtt cgtccagttg ctcgtgacgg
      541 aaatgaagaa ccaggaccca atgaatccga tggacggaaa ggatctcgcc gcacagctgg
      601 cgcagttctc aagcgttgaa cagttgatga acatcaacac caagcttgac aactttgcca
      661 cgctattcgc accgacggca ccggcttcga gcagtagctc cacgacccag ggcgcttagg
      721 cgcctgaatg accatacaca cactcatcgg actttaacaa catggatcgc tcgctattct
      781 cagctgtctc gggcctgagg aacaaccaga cccggatgga cgtaatcgga aacaacatcg
      841 cgaacgtcaa tacgactgcg ttcaaggcaa gccgtgcaaa cttcacggag agcttttcgc
      901 aggttctctc cggcgcaacg cgtccgggaa ccacgacagg cggaatcaat tcgatggctg
      961 tcgggctggg ttctcagctc agcagcatcg acaccgtctt cacgcaggga aaccgcgaga
     1021 cgaccggcgt cccgaccaac ctcgcgatac agggaaattc gttcttcgtc gtctcgaacg
     1081 gggcgcagaa cttgttcacg cgcgacggta acttcaagtg ggattccaac ggtacactcg
     1141 tcgcgggcaa cggtggaatc gtccagggcc tgatggcgaa gaacggcgtc cttggcggag
     1201 gcctgactgg catctcggtg ccgatcggcc agaccacgcc cgcagccgca acgaccaagg
     1261 cgacggtcgc cggcaacttc aattccgaag cgccgaacat cgttgccgtc gatccgaaca
     1321 atccgactgc cgccgagctt gcagatcctg tgaacgctgg ctcgaaggtg gagaccaccc
     1381 tcggtgtctt tgattcgctc ggctccaagc acgagctcac gctggttgcc tggaaaaccg
     1441 gccagaacac gtgggagtgc aagatcgatc ccaccagcct gaactacgat acgacgcaac
     1501 cgtatacatt cgggcctggc gcgcagtcgt caccagcggc agccactacg ccgtggcagt
     1561 tcacgttcaa gagcgacgga acgatcgata cggcaaattc caatcttccg aacgtgacgt
     1621 tcacaccagc cggtggtggc gcggcggttt cgctcaagct cgatcccggc gctggctcga
     1681 ctggtgtcac ctcgctcgcc gtcggcaatt ccgcggttct gcgcgaccag aatgggtacg
     1741 catcgggcgt tcttcagtcc gtctcgattg gtcaggacgg agtcgtcacc ggggcgttct
     1801 ccaatggaac gaaccagacg ctggcacaga tcgctctcgc ggacttcaac aatcctgagg
     1861 gcctggacca ggccgccgac agcatgtaca cggtgtcggc aaactccggc acaccgttga
     1921 tcggctactc aggaaaggac accacctcga cgattgcgag cggcgcgctc gaaatgtcga
     1981 acgtggatct ggctcaggag ttcaccgata tgatcatcac gcagcgcggc ttcgaagcca
     2041 acggcaagat gatcacaacg agcgaccaga tgctgcagac tctgatcaac atgcgtcagt
     2101 aatgatgtag gatagccgcg ccaggcatca ctgctgcggc aatattagcc gagggcagcc
     2161 cggaagaaat tgccgggctg cccttttttt gtccatcagt cactcgtaac acggaaaccg
     2221 gttactgcaa cgtaactgct tatgggataa tcgtttagga cgtcttataa agcgtgccag
     2281 acgtcgcttt tcgagtggta tgtcgcctgc ctttaccggt gctgcgaagt ccgcgacaga
     2341 actacttccg aaaggcgaca cgcatggcag acgagaaatc accagagccc gaaaaagccg
     2401 caccgccggc cgccaagagc ggcatggcca agctgttacc actgattggc ggggtggtag
     2461 gagggatcgc gcttggcgga atcctcggat tcacgctgct cggtcccaag ctctcgcaca
     2521 agaccgcaac gactcccgcc gctacggaga gcgccaaggc cgccacgaag gaaggcggac
     2581 cggaagtgaa gaagggcgac gctccgccgc cgatctacca ggtggacaat ctggtgatga
     2641 atccagccgg gtcaggcggc tcgcacttcc tgttgatgtc cgtggcactg cagctcaagg
     2701 atgcaagctc gctcgagacg atcaaggggc gtgacgccga gctgcgcgac gcaatcctcc
     2761 gcctcttctc gcgaaagacc agcgaccaga tagccgacat ctccgcaagg gaccagttcg
     2821 gcgttgagct gatgggtgtc ctggacagga tgttcggccc tggtaccgtc gcgaagattt
     2881 acttcccaca gttcgtgatc cagtgagcgg cgatgcacgc ccgatggcat cgggcacact
     2941 gtcgcagagc gagatcgatc gcctcctggg cggagcgagc aacgttccgt tccccggtgc
     3001 gtcggaagaa tcgcccgtac agatgtacga ctttcgccgg ccgcaccgcg tttcgaagga
     3061 acgcctgcgg acgttggagg cgatctacga gcgcctggtg aagtcgctcg agagctgggt
     3121 gattggcaga gtacgcggcc agatcgagat gcggctgcag ggtgtcgagc agttctcgtt
     3181 cggtgagttc acgctgtcac tgccgacgcc gtgcgcttcg ttcatctgcg agatcaacga
     3241 ctccggcgga cagttgggcg tcgtggatat cggcgaggag ttcgccttct acatggtcga
     3301 ccggctgttc ggtggcagtg gccagcagat gtcggcctca cgcccgctca cgcgtgtgga
     3361 gcgcatggcg ctacgcggcc tggtagacaa ggtcaactcg ctgctcgccg aagtctggtc
     3421 cgattacata acgatgtcgc tcgagatcag ctcgttcgag tcgttcccgg acattctgct
     3481 ccagagcgcg aaccgtgacg atccggttct ggtcgcgaac atcgaggtga cggcgggcga
     3541 tgtgagttcg ctgatgcttg tatgcctgcc attcgcggtg ctggacaagt tcttcaccaa
     3601 taccgcgaca cgcagcttcg cgaacgcaac gggctccgag cacgagcgtg cggtaagtcg
     3661 cgcgcttgcc gaacactcgc tgcgagcgac acgtgtcaat gtgtcggcgc ggcttcccga
     3721 gtttcgcatg tcgatgcgcg acatcgcctc gctgtcgcac ggcggcgtaa tcacgaccgc
     3781 attaccgagc aacagtccca tccgcgtcat ggtcggcgat caggagcgct tcgccggtac
     3841 tgccgggcgg gttggtaaca agctcgcgat tcgtctcgaa ggtgccctga cacagacggg
     3901 cgaagttcga ggcgcagcac ctgtcgtccc gcaattcaat gcttcggtaa tcaccgaagc
     3961 gcttcaaacc caaccgatct cagccgagta acatggatca gaatgtgaac gccgccgccg
     4021 gcgccgaatc tctcaacgca gtggacgctg ggtttcccgg cgccaacaat gaagtaccga
     4081 tttcgatgct gctcgatctc acgctcccga tctcgatcga gctcggccgg acatcgatga
     4141 cagtgcagga cattctgcgt ctcgggcgcg gatcagtgat acagctggat cgcctcgcgg
     4201 gcgagccgat cgatgtattc gtgggcgatc gccggtttgc ggagggcgag gtggttctcc
     4261 tgggcgagac attcggtgtg cgcatcacgc gaatcctgcc gcgcgctaac gcagtggagg
     4321 aaatcgcagc gtgagtgctc cttcgttcct gatggtcatg gcgatgctcg ccatcgtgct
     4381 tggcgcgatg ggcgtcgcga tgcgggtgct gcgacgctac gcaatgacca acgcgtccag
     4441 gaaaggcagc gtcaagatgg agatcattca gcgactgtcg ctgggccagc gccagggcct
     4501 cgcggtggtg cgcattggca cgcgcgtgct ggccgtttcg atgggcgagg gaggagtaca
     4561 tcaggtcgcc gagctgagcg acgctgatct cgcaccgacc gacgccgcga aggcaaccgg
     4621 cagcgcgccg attcacgcgc tcgcagacgg aatccgcaag ctggttctga tccgcggcaa
     4681 cggcgaagcc acggcgaagt ataccgcggg tggcgtgctg gacggagccg cagcgagccg
     4741 tagcagcaag gatggcaagc gcatctcgta cgtcgcaccg atggaagatt tccaggccgt
     4801 gctgagcatg gcgatggcag gcggtaccaa gtagtgaagt ttcgcggcgt ggttattgga
     4861 ctcgcgactc tgctggcgtt ggcgccggcg agcgcaccgc tgttcgcaca ggcaccggca
     4921 caacccgccg cacaacctgc cgcacaacct gccgcgcaag gcgcgaacgc agctgcgggc
     4981 ggagctggtc caaccggatc cagcgtcgcg aacactcttc agtcggttgc gaactcgacg
     5041 aacgccgcgg cggccaggcc gatcgcgcaa cagccgaatg caattccaca gccgccgaag
     5101 atcgcagcgc ccgcggccaa cgcggcagca ggtggtacgg ccggcactcg cgctgcacgc
     5161 gccggcgcgc agcctgccgg cccaaagacg gccaccacgg caactgcggc agctgcgaat
     5221 gcaccgctga ctccatcgcc cagcctggac aacatggtct ccaagctgac gcctcagatg
     5281 gatctgcgcg tcggtagcgg gaaggaagac ggcgggcttc gtctgagcgg gacagtcggg
     5341 atcgtagtga tgatggggct gctgacgctg ctcccgacgc tcgtgctcct gatgactggc
     5401 ttcacgcgca ttctcatcgt cctcaatttc ctgcgccagg cgctcgggac gcagaacgct
     5461 cctccggcac agatggttgc cgcgctgtcg ctcatcctca ccggcttcgt gatggcaccg
     5521 acgctcaaca aggtgaatga gaccgcgctg cagccatgga tgaacggcaa gatcgagcag
     5581 ggcgagatga tgaagatcgc ggtggtccca ttccgcgagt tcatgctggc gcacacacgc
     5641 gatcatgacc tgcaggtgtt catagacatg agcagcggtg tcgcgccgcg caacgaagac
     5701 gagatcccgc tcgtgacgct ggtctcggca ttcgcgacga gcgagctgcg cacggcgttc
     5761 cagatcggct tcgcgttgtt cctgccgttc atcatcatcg acatcgtcgt gtcgagcgtg
     5821 ctgatgagca tgggcatgtt catgcttccg ccggcgatga tatcgctgcc gttcaagttg
     5881 ctgctcttcg tcctcgtgga cggctggacg ctcgtcgtcc agtcgctcgt gaccagcttc
     5941 cgcgtctaga gcatgtcaca cgtcctcgtt gtcgatctcg cgcgcaacat gatcatgacc
     6001 gcgctgctga tcgcgtcgcc gatgctggtt gtcgcgctcg ccgtcggctt ggtggtgtca
     6061 atcatccagg cggtgacaca gatccaggag cagacgctct catttgtgcc aaaactcgtc
     6121 gcggtcgccg tcacgttcat catcgcgttg ccgtggatca tacagatcat ggtcaagtac
     6181 acgagcgagc tgtttcgctc actgccgtcg atgatttcgt gaccgacgtt cgcccatttg
     6241 acctgttcgc gcccggctcc gggaccgtgg ccgtactcgt cgcactgcgt ctcaccggac
     6301 tcatgctgat cgctccggta ttctcagctg cgacggtccc ggtcaaatgg cgcacgtccc
     6361 tcctgatcgt gctcacgatc gtgattcagc ccatcgcgta tgcaaacatg cgcgtgatac
     6421 cacagatcac gccgtcaact gcgatgggcg agctgctcgt tgggttcggg atcgggctcg
     6481 gcgccgcgct gctggtcggc gcggctgaaa gtgccggaga tctgctcgca attcagatcg
     6541 gcctttcggg cgcgtcactg ctcgatccgc tcatcaagca gacatcgccg gtactggcca
     6601 actttctctc gctctttgcg ataacgattc tcctcgcgct caacgttcac ctcggcatga
//
LOCUS       DATIMD010000588         4287 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5160167, whole genome shotgun sequence.
ACCESSION   DATIMD010000588 DATIMD010000000
VERSION     DATIMD010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4287
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5160167"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..879)
                     /locus_tag="VLI40_13150"
     CDS             complement(<1..879)
                     /locus_tag="VLI40_13150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HSU98174.1"
                     /translation="MLMVGTLKGAFLIWSDAARTTWRIDGPHFPGESVYALALDQRNG
                     RRRILAATRSFHWGSVVRWSDDFGQSWTAPDRQNVKFPSGLDMSLVQVWQIMPGRASE
                     PDVLYAGVEPAALFESRDAGESWNMIRGLHDNEDRPKWQPGGGGLGLHTIIIDPREPA
                     RMAVAISSGGFYRTDDGGSNWQARNVGVRAEFLPDKYPKFGQCVHKVVHHPARPERLF
                     LQNHWGLYRSDDWGDSWVDIANGVPSDFGFSMQMHPHDPNTVYIVPIESDQFRCVPEA
                     KLRVYRTSDAGASWEPL"
     gene            complement(1050..1754)
                     /locus_tag="VLI40_13155"
     CDS             complement(1050..1754)
                     /locus_tag="VLI40_13155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98175.1"
                     /translation="MHRIYSYALAAAAVALSPLATTVQGQQEASRSVAGGGISVPGWT
                     GKIDASAAKRGSTIKDAKLSKEGDALHVTTGPAVAYWNPSDKASGDYTVSATFREPKY
                     MSLNDHPHPYGVFIAGNDMGTDQQTYLYCAAYGDGNFIVRGFGPAPFQMNGREGAASP
                     AVHKAPGKDQPVEQLIAMSVKGDKVSCSINGTEVASYTKAELVAPGKLKSTDGVYGIR
                     FAHNTEGLVTGLTVKK"
     gene            1998..2549
                     /locus_tag="VLI40_13160"
     CDS             1998..2549
                     /locus_tag="VLI40_13160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98176.1"
                     /translation="MLQNLAEASLSDWGSFYVITGSAAAALTGLQFVVVALINDTRRR
                     SSTASIDAFGTPNIVHFCAVLLVSAAMSAPWRVLSHLSLLIGACGIAGAIYALLVARR
                     AKLQPDYVPVLEDWIWHVALPFISYLALLIAAILLFRYEADAVFTMGAAALLLLFIGI
                     HNAWDTITYLVVEQVSGKDGESQ"
     gene            complement(2614..>4287)
                     /locus_tag="VLI40_13165"
     CDS             complement(2614..>4287)
                     /locus_tag="VLI40_13165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98177.1"
                     /translation="GFQVWNVENPGQVSLKTTYYCPASQSDVSVYKNLLFVSSEATSG
                     RLDCGGEGVKDTVSKERLRGIRIFDISDINNPKYISNVQTCRGSHTHTLLVDPKDKAN
                     VYVYISGSAGVRSPSEMPGCSKVTPDKDPNSALFRIEVIKVPLAHPEKAAIVSSPRIF
                     NDLVAPAQHGAASADVAEIAEARAKGAFVVNIMGNDMVLPPAFSKHMLDSMVTARGGT
                     GAPTAADSATLRTALPDMITKMIGPRGKTGPTQCHDITVYPEVGYAGGACEGYGMLLN
                     IKDPTHPIRLDAASDSNFSYWHSATFNNDGTKVLFSDEWGGGGQPKCRATDPRDWGAD
                     AIFTLSDNKMHFQSYYKLPAPQTSFENCVAHNGSLIPIPGRDVMVQAWYQGGVSVFDW
                     TDATHPVEIAYFDRGPVDSTRMASGGFWSAYWYNGKIVGSEISRGLDVFELQPSEYLS
                     QNEIDAAKTIHFDYLNVQGQPKIVWPASFALARAYVDQLERSKGLASDKIASVRQDLT
                     SAESASGAARRASLTKLAEQIKGDENGSSDAAKVKMLTGAVTQLASASR"
BASE COUNT          772 a         1214 c         1359 g          942 t
ORIGIN      
        1 gagcggctcc cacgatgcgc cggcatcact ggtccgatag acgcgcagct tggcttcggg
       61 cacgcaacga aattgatctg attcaatggg tacgatgtac acggtgttgg gatcgtgcgg
      121 atgcatctgc atggagaagc cgaagtcgga cggaacgccg ttcgcgatgt ccacccatga
      181 atcgccccag tcgtcgctgc gatacaggcc ccagtgattc tgaaggaaca gtctctccgg
      241 gcgcgccgga tggtgcacca ccttgtgcac gcactgtccg aacttggggt acttgtcggg
      301 gagaaattct gcgcgtacac cgacgttacg tgcctgccag ttgctgccgc cgtcgtcggt
      361 tctgtagaat ccgccgctgg atatagcgac cgccattcgc gcaggctccc tgggatcgat
      421 aatgatcgtg tgaaggccca atccacctcc accaggctgc catttggggc gatcttcgtt
      481 gtcatgcagg ccgcgaatca tgttccatga ttcaccggcg tcgcgcgatt cgaagagcgc
      541 cgcgggctcg actccagcgt agaggacgtc cggctcagac gcgcggccgg gcatgatctg
      601 ccagacctga acgagcgaca tgtccaggcc ggacggaaac ttcacattct gccgatccgg
      661 tgctgtccag ctctgtccga agtcgtcgct ccagcgtacc acgcttcccc agtggaagct
      721 gcgtgttgca gcgagaatgc gacgacggcc attccgttga tcgagtgcga gcgcgtacac
      781 ggattcaccg gggaagtgcg gtccatcgat gcgccaggtg gtgcgtgctg cgtcggacca
      841 gatcaggaat gcgcccttga gcgtgccgac catcagcact acttcatcgt tatcactggc
      901 cttcgtttca gaattcgtgt cagagcgaga ttcaacgaga gtcatggtag tctcagtggt
      961 ggtatcgcaa atccaacggg gttctggagt gtttgcacga tgtcacagca atgacgtgat
     1021 atcgtgcaaa cactgcgttg ctgcacctgc tacttcttga cggtgagacc ggtaacgagg
     1081 ccttcggtgt tatgcgcgaa gcggatgccg tacacgccgt cggtcgactt gagttttccc
     1141 ggggcgacga gctcggcttt ggtgtagctg gcgacttcgg ttccgttgat cgagcatgag
     1201 accttatcgc ccttcacgga catggcaatc aactgctcta ccggttggtc cttgccgggc
     1261 gccttgtgaa ccgcgggact cgcggcgcct tcacgaccgt tcatctggaa aggtgcgggg
     1321 ccgaatccac gtactatgaa gtttccgtcg ccgtaggcgg cgcaatacag atacgtctgc
     1381 tgatcggtac ccatatcgtt tccggcgatg aacacgccgt acggatgtgg atggtcgttg
     1441 agcgacatgt atttgggctc gcggaaggtc gcgcttaccg tgtagtcgcc gctcgccttg
     1501 tcggaaggat tccagtacgc gacggccggt ccggttgtca cgtggagggc gtcaccttcc
     1561 ttggagagct tggcatcctt gatggtcgag ccgcgctttg cggcgctggc gtcgatcttc
     1621 ccggtccagc cgggaactga gatgccgcca cctgcgacgc tgcgcgatgc ttcctgctgg
     1681 ccctgcacgg tggtcgccag gggtgagagc gcgaccgcgg cagcggccaa cgcatagctg
     1741 taaatgcgat gcatggagaa ctacctctac tgaaagtggt tgaccgaatc gagccgctgg
     1801 tttctcagtg gcggatttgc tggtgccgga tcgtggaaat ctacaggaag ttacgggggc
     1861 gagcgccagt ctccaggggc tgccggcaag ccggtctgcg gctggccgcg gattgatctt
     1921 tgggcccata ccgcgcagct tcggggtgag ggatcggacg cgaccgccgc aaacaatact
     1981 catccactcg gagggtcatg ctgcagaacc tggccgaggc ttcgctcagt gattggggaa
     2041 gcttctatgt gatcaccggc tcggcggccg ctgccctcac cggactgcag ttcgtcgtgg
     2101 tggcgctgat aaacgatacg cgcagacgta gtagtacggc gagcatcgat gcgttcggca
     2161 cgccgaatat cgttcacttt tgtgcagtgc tgctcgtgtc tgccgcgatg agcgcgccgt
     2221 ggcgcgttct ctcgcacttg tcactgttga ttggcgcgtg cggaatcgct ggcgcgatat
     2281 acgcgctgct ggtcgcgagg cgagcgaagc tgcagcctga ttatgtaccg gtcctggagg
     2341 attggatctg gcacgtggcg cttccattca tctcgtacct ggcgttactc atcgccgcta
     2401 ttctgctgtt tcgatatgag gccgacgcag tgttcacgat gggtgcagcg gcgctgctgc
     2461 tgcttttcat cggcattcac aatgcatggg atacgatcac atacctcgtg gttgagcagg
     2521 tgtccggaaa ggacggggag tcccaataaa aaagcctgcg ccagtattac taaccggcgc
     2581 aggctttttt ttacttcctg aatcagatca cgactagcgc gatgccgagg ccaactgtgt
     2641 tacggcgcct gtgagcatct tcaccttcgc tgcgtcggac gatccgttct catcgccctt
     2701 gatctgttcg gcgagcttgg tgagtgaagc gcgtcgcgct gcacctgacg cactctcggc
     2761 gctggtcagg tcctggcgga cggatgcgat cttgtcgcta gcgagcccct tggaccgttc
     2821 gagctgatcc acgtaggcac gagcgagcgc gaagctggca ggccagacga tcttcggctg
     2881 tccctgaacg ttcaggtagt cgaagtggat ggtcttcgca gcgtcgatct cgttctgcga
     2941 gagatactca ctcggctgca gctcgaacac atcgaggcca cgcgagatct cggagcccac
     3001 gatctttccg ttgtaccagt aagctgacca gaagccgccg ctagccatgc gcgtggagtc
     3061 gaccggtccg cgatcgaagt aggcgatttc gactgggtgc gtcgcatcgg tccagtcgaa
     3121 tacggagacg ccgccctgat accaggcctg caccattaca tcgcgtccgg gaatcgggat
     3181 gagcgagcca ttgtgggcta cgcagttctc gaacgatgtc tgtggtgccg gcagcttgta
     3241 gtagctctgg aagtgcatct tgttatccga gagcgtgaag atcgcgtcag caccccaatc
     3301 gcgaggatcg gttgcgcggc acttgggctg gccaccacca ccccattcgt cggagaacaa
     3361 caccttggtg ccatcgttgt tgaaggtcgc cgagtgccag taggagaagt tggaatcgga
     3421 tgctgcatcg aggcggatgg ggtgtgtcgg atccttgatg ttcagcagca ttccgtagcc
     3481 ttcgcacgca ccaccggcgt aaccgacttc aggatacacg gtgatgtcat ggcactgagt
     3541 tgggccggtc tttccgcgcg gaccgatcat cttggtgatc atgtcgggaa gcgcggtacg
     3601 aagtgttgcg ctatcggcgg cggttggcgc accggtgcct ccacgtgcag tcaccatgct
     3661 gtccagcatg tgcttggaga acgctggcgg gagcaccatg tcattgccca tgatgttcac
     3721 gacgaaggct cccttggcgc gtgcctcggc gatttcggca acgtccgcgg atgcagcgcc
     3781 gtgctgtgcc ggcgctacca ggtcgttgaa gatgcgcggt gagctgacga tcgcggcctt
     3841 ctcgggatgt gcgagcggaa ccttgatcac ttcgatgcgg aagagcgccg agttgggatc
     3901 cttgtcgggc gtgaccttgg agcagcctgg catctcgctc ggtgagcgga ctccagccga
     3961 gccggagata tagacgtaga cgttggcctt gtccttagga tcgacgagca gagtgtgcgt
     4021 gtgggagcca cggcaggtct gcacgttgga gatgtacttc ggattgttga tgtcgcttat
     4081 gtcgaagatg cggatgccgc gcaagcgttc cttgctgacc gtatccttca cgccttctcc
     4141 gccgcaatcg aggcgtccgc tggttgcttc gctcgaaacg aagaggaggt tcttgtagac
     4201 ggaaacgtcg ctctgcgatg ccgggcagta gtacgtcgtc ttgagcgata cctggcccgg
     4261 attctcgacg ttccatacct ggaatcc
//
LOCUS       DATIMD010000589         1927 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4576367, whole genome shotgun sequence.
ACCESSION   DATIMD010000589 DATIMD010000000
VERSION     DATIMD010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4576367"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..383)
                     /locus_tag="VLI40_13170"
     CDS             complement(<1..383)
                     /locus_tag="VLI40_13170"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HSU98178.1"
                     /translation="MPRFPIAGPFPESARPESLLHAPHTILVLGGGAMRGMAHIGVIR
                     ALIDARIEIDAIVGTSIGALIGARWAMGASIDELEADALGVTETKVLKRNIKAYMIAG
                     VAQTSIYDGEHYRDLIQRIIAPATFA"
     gene            469..>1927
                     /locus_tag="VLI40_13175"
     CDS             469..>1927
                     /locus_tag="VLI40_13175"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HSU98179.1"
                     /translation="MRIHSAVIIALAAASVAVSTPGAQTVGKRLPGATSKPDLVVFIT
                     VDQMRPDYLTRFLPQLSGGLGRLYRGGAVFTNAFQDHAITETAPGHSETMSGRFPVHN
                     GIVMNSAGVNDTTVTLVNAPGAGASPMRFRGTTLTDWMHAADPASRSLSISRKDRGAI
                     LPIGKSKSQVFWYANNGTFTTSTYYATALPAWLDEYNAKRRPASFTGKTWNPLLPLSN
                     YPELDSVSVENGGKDFTFPHVISSDTARALETLSTYPWMDQLTLEVALAGVRAMKLGA
                     GPHTDLLAVSLSTTDYIGHTYGPDSREQHDQILRLDRALGAFMDSLYAIHGNRNIVFA
                     LTADHAVAPYPTVHVHDNNAGAMYVDVGPFVARVRSELQASGAPKNAFAFSDGVVAID
                     RAALAAAHVNADSLVLAFRDTILKVPGVRRADRIRDLVHADTVHDDVARRWLRMFDSD
                     STYALVVTLTPYSYWGRPGGSAEHGSPYDYDAHVPM"
BASE COUNT          358 a          623 c          570 g          376 t
ORIGIN      
        1 gcgaacgtcg cgggcgcgat tatccgctgg atcagatcgc ggtagtgctc accatcatag
       61 atcgacgtct gcgccacacc ggcgatcatg tacgccttga tgttgcgctt gagcaccttg
      121 gtctctgtta cgccaagcgc atctgcctcg agctcgtcga tcgacgcgcc catcgcccag
      181 cgcgcgccta tcagtgcacc gatgctggtg ccgacgatcg cgtcgatctc gattcgcgcg
      241 tcgatcagcg cgcggatcac tccgatgtgc gccatgcctc gcatcgcgcc gccgccgagt
      301 accaggatgg tgtgaggggc gtggaggagg ctttcgggtc tggcactttc cggaaatggt
      361 ccggcgattg ggaaacgcgg catctgagtt gtctaattaa gcggcagaag tacccggcgt
      421 aagtccccat caagtgccgg aatctgcgtc ctttcgtatc ttttacggat gcgcatccat
      481 tctgctgtga tcatcgctct cgcggccgcg tctgtcgctg tatcgactcc gggtgcgcag
      541 acggtgggga agagattacc gggcgcaaca tccaaaccgg acctcgtcgt cttcataacc
      601 gtcgatcaga tgcggccgga ctacctcacg cgcttcctgc cgcagctctc cggcggactc
      661 ggcaggctct atcgcggtgg cgcggtgttc accaatgcgt ttcaggatca cgcgataacc
      721 gagaccgcgc ccggccactc cgagaccatg tccggccggt tcccggttca caacgggatc
      781 gtcatgaact cggccggtgt caacgacacg accgtgacgc tggtcaacgc acccggtgcg
      841 ggtgcatcgc cgatgcgctt tcgcggcacc acattgacgg actggatgca tgccgcggat
      901 ccggcttcgc ggtccctctc gatctcgcgc aaggatcgcg gcgcgatcct gccgatcggc
      961 aaatcgaagt cgcaggtgtt ctggtacgcg aacaatggaa cgttcaccac gagcacctac
     1021 tatgcgaccg cgctgcccgc atggctcgac gaatacaacg cgaagcgtcg gcccgcgagc
     1081 ttcacaggta aaacctggaa tccgctgctg ccgctcagca actaccccga actggatagc
     1141 gtgagcgtcg agaacggcgg gaaggatttc acatttccgc acgtgatatc gagcgacacc
     1201 gcacgcgcac tggaaactct atccacgtat ccatggatgg accagctcac cctcgaagtc
     1261 gcgctcgccg gcgtgcgcgc gatgaagctc ggtgcgggcc cgcacaccga tctgcttgca
     1321 gtctcgctat ccacgactga ttacatcggg cacacctacg gtcccgattc gagagaacag
     1381 cacgatcaga tactccggct cgatcgcgca ctcggtgcgt tcatggattc gctctacgcc
     1441 atacatggca atcgcaacat cgtgttcgca ctcactgccg atcatgcggt agcaccgtat
     1501 ccaaccgtgc atgtgcatga caacaatgcc ggtgccatgt acgtcgacgt cggaccgttc
     1561 gtcgcgcggg tacgatctga attgcaggca tcgggcgcgc cgaagaatgc atttgcattc
     1621 agcgacggcg tcgtcgcgat cgaccgtgcc gcgctggcgg ctgcgcacgt caacgccgat
     1681 tcgctcgtgc ttgcatttcg cgacacgatt ctcaaggtgc cgggcgtgcg acgcgcggat
     1741 cgcattcgtg acctcgtgca cgctgacacc gttcacgacg acgtcgcgcg ccgttggctg
     1801 cgcatgttcg acagcgactc gacctatgca ctcgtcgtga cgctcacgcc gtacagctac
     1861 tggggcaggc ctggcggaag cgcggagcat ggctcaccgt acgattacga cgcgcacgtt
     1921 ccgatga
//
LOCUS       DATIMD010000590         2402 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2265556, whole genome shotgun sequence.
ACCESSION   DATIMD010000590 DATIMD010000000
VERSION     DATIMD010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2265556"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..512
                     /locus_tag="VLI40_13180"
     CDS             <1..512
                     /locus_tag="VLI40_13180"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HSU98180.1"
                     /translation="LADTNTGLDPVLRERALSEAHGLSAMVGTIAQRNGLGMHEMPAH
                     ACGASLEQLYAALEYAKISLGAHTMNHPNLISLTDADLAQELAQPLEWLQQFGDRTLP
                     MVSYPYGLADDRVRTAARTAGYTAGFMIDGGWTTATPRDPFAIPRLNIPAGVSRNGFI
                     LRAAGVLQG"
     gene            512..1714
                     /locus_tag="VLI40_13185"
     CDS             512..1714
                     /locus_tag="VLI40_13185"
                     /inference="COORDINATES: protein motif:HMM:NF026968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HSU98181.1"
                     /translation="MPDNKHTRRVLVTDGEQRATLAVVRSLGAAGHTVHVCASTSRTL
                     AGASRFARSEHVVANALANPATFTTEVRDLISQLGIDTLIPMSEPALLALLPERERLE
                     NVLIPFPEADVFSAISDKQAVLAAAARAGIATPEQTVLHDASSALDVSSIRYPVVVKP
                     ARSVSTGAGDRLKLSVRHAASAQELESVLREMDPRAYPLLLQQRIVGPGVGIFVLLWD
                     GQLIAQFAHRRIREKPPSGGISVYRASIAVDAELLRRSVALLAEFAWRGVAMIEYKLD
                     EHTGVPYLMEINGRFWGSLQLAIDAGVDFPRLLIEAATGRTPAPVTQFRIDVRSRWFW
                     GDVDYLLTRLRSSDAQLSLPEGSPSKWDAVRDFFRRDPHDVDEIRRRGDMRPFARESI
                     QWFRQLGK"
     gene            1690..>2402
                     /locus_tag="VLI40_13190"
     CDS             1690..>2402
                     /locus_tag="VLI40_13190"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HSU98182.1"
                     /translation="MVQTARQMTFDVPGAIHMHSDYSHDGLDSLENLRDVCITRGIRW
                     VGLTDHAEDLDTEVFGEYLAHCASLSDDEFRFIPGLEFRFAGFRGVHLFAVGLDRWIQ
                     PRTFEEFFDQTNTAARFTVLAHPVLCRYVVPPIVLERIDAIEIWNTNYNTRYLADPRA
                     IELYHTLHARRPEVVATVGLDQHDSSNDREVRTLIAADDVATAPDALKAGRFRTTGRN
                     AAFDSVASLSAGEMRSLRFR"
BASE COUNT          466 a          763 c          706 g          467 t
ORIGIN      
        1 tcctcgcgga cacgaacacg ggactcgacc cggtcttgcg agaacgcgct ctttccgaag
       61 cacacggctt gagcgcgatg gtcggcacga tcgcacaacg caacggcctg ggtatgcatg
      121 agatgccggc gcatgcgtgc ggagcttcac tcgagcagct gtacgctgcg ctcgaatacg
      181 cgaagatctc gctcggtgcg cacacaatga accatccgaa cctcatctcg ctcaccgatg
      241 ccgacctcgc tcaggagctg gcacagccgc tcgaatggct gcagcagttc ggcgatcgca
      301 cgcttccaat ggtctcgtac ccttacggac tcgcggacga tcgagtccgg acggctgcgc
      361 gcacggcggg ctacaccgcg ggcttcatga tcgatggtgg ctggacgacc gccacgccgc
      421 gagatccatt tgcgattccg cgactcaaca tacctgcagg cgtatctcgc aacggcttca
      481 tcctgcgcgc agcaggcgtt cttcaaggct gatgccggac aataagcata cgcgtcgcgt
      541 tctcgtcacg gatggcgagc aacgcgcaac gctcgcagtg gtccgatcac tcggagcggc
      601 tggtcacacc gtccatgtgt gtgcgtccac atcccgcacc ttggccggtg catcgcgatt
      661 cgccagatca gaacacgtag ttgcgaacgc gctcgccaat ccggcaacgt tcacgaccga
      721 agtacgggac ctgatatcgc aactcggtat cgatacgctc attccaatga gcgagcccgc
      781 gctcctcgcg ttgctacccg agcgcgagcg tctggaaaac gtcctcattc cgttccctga
      841 ggcggacgtt ttttccgcga tctcggacaa gcaagccgta ctggcagctg ccgctcgcgc
      901 gggcatagcg acgcccgagc agacggtact ccacgacgca tcgtcggcgc tcgacgtgtc
      961 gtcgatcagg tatcctgtcg tcgtcaagcc tgcccgatcc gtatcgacgg gcgctggtga
     1021 tcgtctcaag ctgtcggtgc ggcacgccgc gtcggcgcag gagctcgagt ccgtcctgcg
     1081 ggagatggat ccgcgcgcct atccattgtt gctgcaacaa cgcatagttg gccccggcgt
     1141 agggatattc gtgctgctat gggacggaca gctcatcgcg cagttcgccc accggcgaat
     1201 ccgcgagaag ccgccgtctg gcggaataag tgtttatcgc gcgagcattg cggtcgatgc
     1261 agagcttctt cggcgatccg ttgcactgct cgccgagttc gcctggcgtg gcgtcgcgat
     1321 gatcgagtac aagctggacg agcacaccgg agtcccctat ctcatggaga taaatggccg
     1381 gttctgggga tccctccaac tcgcgatcga tgcgggtgta gatttcccgc gtctactcat
     1441 tgaagcggcc actggccgaa cgccagcgcc agtcacgcaa ttccgaatcg acgtacgatc
     1501 gcgctggttc tggggagatg tcgattatct cctcacccgg ctgcgcagct cggatgcaca
     1561 gctttcactt ccggaaggat cgccgtcgaa atgggacgca gtgcgcgact tcttccggcg
     1621 cgatccccac gatgtggatg agataagacg acgcggcgac atgcgccctt tcgcgagaga
     1681 atcaatacaa tggttcagac agctaggcaa atgacgttcg acgttcccgg tgcgatccac
     1741 atgcacagcg attattcaca tgatggactc gactcgctgg agaacctgcg cgacgtctgc
     1801 atcacgcgcg gaatccgctg ggtcggactt accgaccatg cggaagatct ggacacggaa
     1861 gtcttcggcg aatatctcgc gcactgcgcg tcgctgtcgg acgatgagtt cagattcatc
     1921 cccggcctcg agtttcgctt cgcggggttc cgcggtgtgc atctcttcgc agtgggactc
     1981 gatcgctgga tccagcctcg taccttcgag gagttcttcg accagacaaa caccgcggcg
     2041 cgctttaccg tactcgccca tccggtgctt tgcagatacg tcgttccgcc gatcgtactg
     2101 gaacgcatcg atgccatcga gatatggaat accaactaca acacccgata tctcgctgac
     2161 ccgcgcgcga tcgagcttta ccacacgctg catgcacgca gaccggaggt cgtcgcgact
     2221 gtcggcctcg accagcatga cagcagcaac gatcgtgagg tacgcacgct catcgccgcc
     2281 gatgacgttg cgacagcgcc agacgctctc aaggcaggga gattcagaac caccggacgg
     2341 aatgcggcgt tcgattccgt cgcatcgctg tcagcgggag aaatgcgtag cctgcgtttc
     2401 cg
//
LOCUS       DATIMD010000591         4954 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2265616, whole genome shotgun sequence.
ACCESSION   DATIMD010000591 DATIMD010000000
VERSION     DATIMD010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4954
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2265616"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..329)
                     /locus_tag="VLI40_13195"
     CDS             complement(<1..329)
                     /locus_tag="VLI40_13195"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HSU98183.1"
                     /translation="MKLLLDTELLLWAAGEPKRLSRTATRLLQSPENELLFSAASLWE
                     IAIKRGLGRDDFRVEPRVLRRGLLDNGYTELPITSQHAVSIDTLPPLHKDPFDRLLVA
                     QALTEGIT"
     gene            complement(326..565)
                     /locus_tag="VLI40_13200"
     CDS             complement(326..565)
                     /locus_tag="VLI40_13200"
                     /inference="COORDINATES: protein motif:HMM:NF014643.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008219 - cell death [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HSU98184.1"
                     /translation="MTTINIHEAKTQLSRLVDQAVKGDSFVIAKSGKPLVKVTALDAP
                     AEPRRLGFMEGEISVPDDFNSMGASELAALFGMKG"
     gene            648..1571
                     /locus_tag="VLI40_13205"
     CDS             648..1571
                     /locus_tag="VLI40_13205"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSU98185.1"
                     /translation="MTAKPVNPRPTTLIEAPRLSERLGATVILASETFQYTGSFKFRA
                     AYHVATSVPHPMIITASSGNFGQATALACSLTGKRCIVVMPQNSARVKVDAVIAYGAT
                     AELIDTTVITREARVAELAAEYPEAYVASAYNDPFVIAGNATLGREIANAPYSFDSVV
                     VPIGGGGLSSGIIQGLREAGSQLPVYGAEPLLANDAAQSLRAGHIVANEYEPQSIADG
                     ARTRSLGAHNWAILQHGLAGIVEVPELQITEAVRLLFSLANLKSEPTGALTTGAMLAD
                     ASRFAGKSVCLVVSGGNVDPAVYGRVLAGEL"
     gene            complement(1615..2163)
                     /locus_tag="VLI40_13210"
     CDS             complement(1615..2163)
                     /locus_tag="VLI40_13210"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HSU98186.1"
                     /translation="MLIKYRLVTLMVAVFGVACSRGMRLPEPIPPISGSPRTAFALRY
                     IDIVQGTGAIAAPRKCFYAHYTGWLTSGRKFDSSRDTLPNGHARTPLSFPQGARRVIP
                     GWDAGFEGMRVGGQRRLIIPYQLAYGELGRPPVIPPKATLVFDVELMGVADTVMHADV
                     ATPRPAIAPPPRCPEWSAVNAG"
     gene            complement(2312..3898)
                     /locus_tag="VLI40_13215"
     CDS             complement(2312..3898)
                     /locus_tag="VLI40_13215"
                     /inference="COORDINATES: protein motif:HMM:NF012664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98187.1"
                     /translation="MQMRQLLLSATASLLVAGTVSAQRPGGRPGGPPGAAPGAPGARP
                     DTLADTLGVPAIEKISTTHHTTSINGKSISYTVHTGTMVLRDENEKPKASVFFIAYTK
                     DQEDAATRPLTFFFNGGPGSASLWLDMGIMAPMHPDMGPNGSQPAPPYNLVENPNSPL
                     DVTDLVQVDAMMTGYSRPAKGVKPTDFTGTQNDIAMFGEFIRDYLDKYKRWQSPKYLF
                     GESYGTFRSAGLASHLQEAEGIELNGVMLLGTVLDLQYIAPSATNDIGYSTFLPTFTA
                     TAWYHKKLPSDLQSQTLQQVVQQSRDYAFGDYMTALAKGNKLTQAERTAVAQKVARLT
                     GVSQQFVLNTNLRIDAGTFRTELLRDQREMLGRYDSRMIGINGNASSTRQDYDPSDVA
                     PSGAFMSAFMRYLHDDLGYSSNLQYFMGGHSGRWDWGPGGYAGYPSTVEDLRTAMAKD
                     PYLHVMVGAGYYDTATPFANAEYTFDHLGFDKTYSDRVEFKYYESGHMAYLNQTSAKQ
                     LKSDIANFIASTKKGGTPSR"
     gene            complement(4165..4812)
                     /locus_tag="VLI40_13220"
     CDS             complement(4165..4812)
                     /locus_tag="VLI40_13220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98188.1"
                     /translation="MRSRHTSNVGLVPTAALSMLFLACVLHKYPGSSQQPASHGVVTL
                     KNGPNLVDLLGDGTRSEVFVSWRGNFNAHGFHTATFYVLARSDVPDAGDVWQVVPFMD
                     GPRDSDREQDSYGTFQGADCALADIRLLHREHATALVILATRDFGESFSDSAAVRFDY
                     YELTRNPDGMFGRPPFYFHYIRTVHARQSYCDVNLAFAHELGLGAHGLAHGEDEP"
BASE COUNT          961 a         1424 c         1563 g         1006 t
ORIGIN      
        1 gtgatgcctt ccgtgagcgc ctgtgccacc agcagccggt cgaatgggtc tttatgaagc
       61 ggaggtagag tatcgatgct gactgcatgc tggctcgtta tcggcagctc tgtgtagcca
      121 ttgtcgagca gaccgcgtcg caaaacccgc ggctcgacgc gaaaatcatc tcgtccgagt
      181 ccacgcttga ttgcgatttc ccagaggctg gcggcactga acagcagctc gttctcggga
      241 ctctggagca atctggtggc ggtcctggac aggcgcttcg gctcgccggc tgcccagagc
      301 agaagctccg tgtcgaggag cagcttcaac ctttcatacc gaataaggcc gcaagctcgg
      361 aagcgcccat cgaattgaag tcatcgggga cggagatctc gccttccatg aagccaagtc
      421 gccgaggctc ggcgggagcg tccagcgcgg tcactttcac cagtggcttg ccggatttcg
      481 cgattacgaa cgaatcgccc ttcacagcct ggtcgaccag cctggagagc tgagtctttg
      541 cttcgtgtat gttgattgtg gtcatggaca tgatcaagac ttagtttatt gaacttagtc
      601 taaccgaatc gcgcttacca atcaaccatt ttcgtcatga gtctcgagtg acagccaagc
      661 cagtgaatcc gcgtcccacc actcttatcg aggcgccgcg gttgagtgag cgactcggcg
      721 cgacggtaat cctcgcgagc gagacgttcc agtacaccgg cagcttcaag ttccgcgcag
      781 cataccacgt cgcgacgtcg gtgccgcatc cgatgatcat aacagcgagc agcggcaact
      841 tcggtcaggc gacggcgctt gcgtgcagcc tcacgggcaa gcgctgcata gtcgtgatgc
      901 cgcagaactc tgcgcgcgtc aaggtcgatg cggtgattgc gtacggagca accgcggagc
      961 tgatcgatac tactgtcata acgcgcgaag ctcgcgttgc cgagctcgcc gcggagtatc
     1021 cggaagcata cgtcgccagc gcgtacaacg atccgttcgt catcgccggt aacgcaacgc
     1081 ttggacgcga gattgcaaat gcaccctact cattcgattc ggtagtcgtt ccgatcggcg
     1141 gtggcggact gtcgtccggc atcattcagg gattacggga agccgggagc cagcttccag
     1201 tgtacggcgc cgagccgctg cttgcgaacg acgcggcgca gtcgcttcgc gcaggacaca
     1261 tcgtcgcgaa tgagtacgag ccgcagtcca ttgcggacgg cgcacgcacg cgatcactcg
     1321 gcgcgcacaa ctgggcgatc ttgcagcacg gacttgcagg tatcgtcgaa gttcccgaat
     1381 tgcagatcac cgaggccgtg cgattgctct tctcgctcgc gaatctcaag tcggagccga
     1441 cgggcgcgtt gactaccgga gcgatgcttg ccgacgcgtc acgtttcgcg ggaaagagcg
     1501 tctgcctggt cgtcagcggc ggcaacgtcg atcctgcagt atatggaagg gttctggccg
     1561 gcgagttgta gcagctgcac ggagcgcgtc aatcgtcagc tcgccgcaaa acggctagcc
     1621 tgcgtttacc gcgctccact ccggacatct cggtggcggc gcgatcgccg gcctcggcgt
     1681 tgcaacgtcg gcgtgcatga ccgtatcggc gacacccatc agctcgacgt cgaaaacgag
     1741 cgtcgccttc ggcggtatca caggcggacg gcccagctcg ccgtaagcaa gttgatatgg
     1801 aatgatcagt cgacgctgac caccaacgcg catcccctcg aatcctgcat cccagcctgg
     1861 aattacacgc cgcgcgcctt gcgggaatga cagcggcgtt cgcgcatgcc cgttcggaag
     1921 cgtgtcgcgc gacgaatcga acttcctgcc gctggtgagc cagcccgtat agtgtgcgta
     1981 aaagcacttg cgcggtgcgg cgatggcgcc ggttccctga acgatatcga tgtagcgaag
     2041 cgcgaatgcc gtgcgcggtg atcccgatat tggcgggatc ggctcgggaa gtcgcattcc
     2101 gcgagagcag gctacaccga atacggctac catgagcgtg acgaggcggt acttgatgag
     2161 cacactactt ccgtttgtga gcgtgagcgt gcaaggccgc acaacggcga catagagaac
     2221 gtctcttctc gatgtcgccg cttgcttgat ggaactgtta cagcgtcacc gacaagttca
     2281 tgtcagtgac gctgaatttt tacaggcagt actaacgcga cggcgttccg cccttcttcg
     2341 tcgaagctat gaagttcgcg atgtccgact tcaactgctt tgctgatgtc tggttgagat
     2401 aggccatgtg gccgctctca tagtacttga actcgacgcg atcgctgtag gtcttgtcga
     2461 agccaagatg atcaaacgta tactcggcgt tcgcgaacgg tgtcgccgta tcgtagtaac
     2521 ctgcgccgac catcacgtgg aggtacggat cctttgccat tgccgtgcgc aggtcttcga
     2581 ccgtgctcgg gtatccggca tatccgcccg ggccccagtc ccagcgtccg ctgtgaccgc
     2641 ccatgaagta ctgcaggttg ctggagtagc cgaggtcgtc gtgcaggtag cgcatgaagg
     2701 cagacatgaa tgcgccggat ggtgcaacgt ctgacgggtc gtaatcctga cgcgtgctcg
     2761 acgcgttccc gttgataccg atcatgcggc tgtcgtagcg gcccagcatc tcgcgctggt
     2821 cgcgcagcag ctccgtgcgg aaggtgccgg cgtcgatgcg aagattggta ttcaacacga
     2881 actgctgcga tacgccggtg agtcgcgcga ccttctgcgc aacagctgta cgctcggcct
     2941 gtgtcagctt gttgcccttg gcgagcgcgg tcatgtaatc accgaacgca tagtcgcgcg
     3001 actgctgcac gacctgctgc agcgtctggc tctgcagatc ggacgggagc ttcttgtgat
     3061 accacgctgt cgcggtgaac gtcgggagga acgtcgagta gccgatgtca ttcgtcgcgg
     3121 acggcgcgat gtattgcaga tcgagcacgg tgccgagcag catgacaccg ttgagctcga
     3181 tgccttcggc ttcctggagg tgcgacgcga ggccggcaga acggaaggtg ccgtagctct
     3241 caccgaagag atacttgggc gactgccagc gcttgtactt gtcgaggtag tcgcggatga
     3301 actcaccgaa catcgcgatg tcattctgcg ttccggtgaa gtccgtcggc ttgacgccct
     3361 tggcggggcg cgagtagcca gtcatcatcg catcgacctg caccagatcg gtgacatcga
     3421 gcggagagtt gggattctcg accaggttgt acggaggtgc gggctgtgat ccgttcgggc
     3481 ccatgtcggg atgcatcggc gccatgatgc ccatgtcgag ccagagcgat gcggagccag
     3541 ggccgccgtt gaagaagaag gtcagggggc gtgtggccgc atcttcctga tccttggtat
     3601 aggcgatgaa gaagaccgaa gccttgggct tttcgttttc gtcacgcagc accatcgtgc
     3661 cggtgtgcac cgtgtagctg atcgacttgc cgttgatgct ggtggtgtgg tgggtggtcg
     3721 agatcttctc gatcgccggc acgccgaggg tgtccgcaag tgtatcgggc cgggctccgg
     3781 gtgcgcccgg tgctgcgcct ggagggcctc cgggtcggcc tccgggacgc tgagccgaga
     3841 ctgttcctgc gacgagtaag gaggctgtgg cgctaagcaa cagctggcgc atctgcatga
     3901 cgaatttctc caggttgtgg tctgcacggg cactgaaaat cggacgaacg acgccagacg
     3961 gcgggtcacc tctatgggtc gacccgccgt ctgggttcat tgcgtcccat acatatcgcg
     4021 cgaggctgcg gatttgttga gatggggcac ccgaacaatc gttcgaaggg gtcaggtctt
     4081 gcgcggtgcg cttctcccgg ccgttgcagc tattcgctac accgcgcaga cgacgcacgg
     4141 ggcaagacct gaccctactg tgcgttatgg ctcgtcctca ccgtgcgcga gaccgtgcgc
     4201 gccgagtccc aattcatgcg cgaaggccag gttgacgtcg cagtatgatt gcctggcgtg
     4261 aaccgttctg atgtaatgga aatagaatgg tggccggccg aacatgccgt ctggattgcg
     4321 ggtgagctcg taataatcga agcgtactgc ggcggagtcg gagaacgact caccgaagtc
     4381 ccgagtggcc agaattacca gagcggtggc atgctcgcga tgaagcaagc ggatgtccgc
     4441 gagcgcgcag tcagcacctt gaaaggtacc gtatgaatct tgttcgcggt ctgagtcacg
     4501 cggtccgtcc ataaatggaa cgacctgcca gacgtctcca gcatcgggga catcgctgcg
     4561 agccagaacg tagaatgtgg cggtgtggaa cccatgcgcg ttgaaattgc cacgccacga
     4621 cacaaagacc tctgacctgg taccatcacc caacaggtct acgaggttcg gtccattctt
     4681 gagggtgacg acgccgtgcg atgccggctg ttggctgctg cctggatatt tgtgcaggac
     4741 gcatgcgaga aacaacatgg agagcgcggc ggtcggtaca agaccgacgt tcgaagtatg
     4801 tcgagatcgc atcaggtcga tcatctgacg ggttaacgaa tgatggtcgc tgtgatgagg
     4861 ccgctcgcgc aaatccagcg aacggccgcc atccgtgaca tgatcaggta cgcttaaagg
     4921 gcttaccgtg ccttcggcac gatcaccgca gcct
//
LOCUS       DATIMD010000592         4755 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1694539, whole genome shotgun sequence.
ACCESSION   DATIMD010000592 DATIMD010000000
VERSION     DATIMD010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4755
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1694539"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..589)
                     /locus_tag="VLI40_13225"
     CDS             complement(<1..589)
                     /locus_tag="VLI40_13225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease N-terminal domain-containing
                     protein"
                     /protein_id="HSU98189.1"
                     /translation="MNGYNFTERVRKVLAMAREEAARLHHEYVGTEHILLGLIREGEG
                     VAAAVLQNLSIDLDDIQQKIEETVKKGKATVATGPDLPYTSRAKKVLELAMAEARELN
                     HSYVGTEHLLLGLLREEKGIAAQVLTDAGINLDEARKETLRLLGTELPQGAGAAATAG
                     APATPPVAKGEKKSKTPALDHFCRDLTQLAAEGQLD"
     gene            complement(586..1662)
                     /locus_tag="VLI40_13230"
     CDS             complement(586..1662)
                     /locus_tag="VLI40_13230"
                     /inference="COORDINATES: protein motif:HMM:NF012443.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein arginine kinase"
                     /protein_id="HSU98190.1"
                     /translation="MSFDPETLPGGGLGWMDGTGEQAGVVLSTRVRLARNVEGYAFSG
                     RAREGERLRVLSQVRDALAVIPAARDGVLVRVDQLEEPDRLLLHERHVVSKELAGLDT
                     GAPPRSGAAVHVGRDVAIMVNEEDHLRIQAMRSGLDLDRAFADARDIDVELGQRVPFA
                     YHREFGFLTACPTNVGTGLRASVLVHLPALVLTKEIGRVLVGLQQVGLTYRGLYGEGS
                     EVIGNLFQISNQTTLGKSEQDLLDYLQDIVRHVIEKELEARKVLLRDAEYILEDKLWR
                     AYGTLRYARSLSFDEAMNFLSGVRLATGLKLIEGLSVYLLNELLVFTQSAHLSTREGR
                     VLTEDEASVVRAAFVRETLERAAQ"
     gene            complement(1659..2117)
                     /locus_tag="VLI40_13235"
     CDS             complement(1659..2117)
                     /locus_tag="VLI40_13235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrB/UvrC motif-containing protein"
                     /protein_id="HSU98191.1"
                     /translation="MVITVTEIDGNGVRQVRLCEQCAAERGLQASVSAPPPAVTDFLQ
                     SVQQHISPSQTDAVRCSFCSSTLRDFRQTGRLGCPYCYTAFEQSLRELLRKVHGQGQH
                     RGREYTGAQGALEAPIPASPDRLRERLERAIRNEEFELAASLRDQLRAIE"
     gene            complement(2137..2853)
                     /locus_tag="VLI40_13240"
     CDS             complement(2137..2853)
                     /locus_tag="VLI40_13240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU98192.1"
                     /translation="MTTVLESRGVTKRYIGGDGVALDVLRGVDLRVESGEMLAIIGES
                     GSGKSTLLHILGGLDRPTSGDVLLSDRRLSDRSDEELAAVRNRGVGFVFQFHHLLREF
                     SALENVSLPLRIAGEAPAVAEARATSLLQRVGLGGRLHHRPGELSGGEQQRTAVARAL
                     AASPGVVLADEPSGNLDLANGERLHDLLAEVVRDLGVGMVVVTHNMSLADRARAVYQL
                     KEGRLSKIVRGEGGGWIGAV"
     gene            complement(2850..4100)
                     /locus_tag="VLI40_13245"
     CDS             complement(2850..4100)
                     /locus_tag="VLI40_13245"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU98193.1"
                     /translation="MTRLELAIAWRYLRSRRGSKLLSFISVIAIAGVVVGVSALIIII
                     GVMNGLQHDLREKILVGSPDIRVLTYGDDLKMDSWRFALKRVRQVPGVVASAPFVQSE
                     GAMNAGRTYASGVYVVGIPGKGSGYPEVTSIREHAVRGKFSFDTKDGTHHGVVIGQLL
                     ASRFNVWPGDTINLISVAGVQQNAATGAYIPRVYRYEVTGVFQTGMYEYDNAYVYIDL
                     RSAQEFAGIDSSVTGLEVSTKDRWNAGVVATAITDHLGFPYRTVDWQEQNHSLFQALK
                     LEKLGMSVILLLIVIVAAFNIVSTLSMVVHDKTREIGILKAMGLPSSAIRNIFLVQGL
                     VIGAVGTGLGLLLGFAGALALDRYKFIKLDPSVYFIDHLPVTTQPRDVILIVVASLII
                     AALATLYPAIQAAKLYPVDAIRSE"
     gene            complement(4097..>4755)
                     /locus_tag="VLI40_13250"
     CDS             complement(4097..>4755)
                     /locus_tag="VLI40_13250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HSU98194.1"
                     /translation="AYADYEVMMDVVERLIVAAADAVRGVESFADAVPVFTTPFRRIE
                     WLASINAGLGADILALDHDGLIQHATRLGVPRAATMSRPKLMDEIFQLLVESKITEPT
                     FVVDYPVELSPLAKPKRGDPRLTERFELFANGRELANAFSELNDPIDQRERFEGQARL
                     RAAGDLEAAGVDEDYLRAMEYGMPPTGGVGIGLDRLLMYLTGIQHIRDVILFPTMRPE
                     "
BASE COUNT          933 a         1588 c         1326 g          908 t
ORIGIN      
        1 gatccagctg gccttcggca gcgagctgcg tgaggtcgcg gcagaaatga tccagcgccg
       61 gggtcttgga cttcttctcg cccttggcga ctggcggcgt ggccggtgca ccagcggtag
      121 cagcggcgcc cgcgccctgc gggagctcgg tgcccagcag acgcaacgtt tccttgcgcg
      181 cctcgtcgag attgatgcct gcgtcggtca gtacctgcgc ggcaattccc ttctcctcgc
      241 gcagcaggcc gagcagaaga tgttccgtac cgacatatga gtgattgagc tcacgagctt
      301 cagccattgc aagctcgaga actttctttg cgcgtgatgt atagggaagg tcgggacccg
      361 tagcgacagt tgctttcccc ttcttcaccg tctcttcgat tttctgttga atgtcgtcga
      421 gatcgatgct gaggttttgc aggaccgccg ctgcaacgcc ttcgccttcg cgaatcagcc
      481 cgagcagaat gtgctcggtg ccgacgtatt cgtggtgcag acgcgcagct tcctcgcgtg
      541 ccattgcgag aaccttacgc acccgctccg tgaagttgta tccgttcatt gggcagccct
      601 ttccaaagtc tcccgtacga aggcagcgcg aacgacgctt gcctcatcct cagtcaatac
      661 gcgcccctcg cgtgtggaga gatgcgctga ttgagtgaat accaggagtt cgttaagaag
      721 gtatacactc aacccctcga tcagtttcag tccggtggcc agacgaacac cgctcagaaa
      781 attcattgcc tcgtcaaaag agaggctcct cgcgtaccgc agtgttccgt atgcccgcca
      841 caacttgtcc tctagaatat actccgcatc ccgcagtagc accttgcggg cttccagctc
      901 tttttcgatg acatgccgaa caatgtcctg caaataatcc agcagatcct gctcggattt
      961 cccgagcgtg gtctgattgg aaatctggaa cagatttcca attacctcgc tgccctctcc
     1021 atataagcct cggtacgtga ggccgacctg ctgaaggccg accagcaccc ggccaatctc
     1081 cttggtgaga acgagcgctg gcaggtgaac cagtacggat gccctcagtc ccgtgccaac
     1141 gttcgtgggg cacgcggtga gaaagccgaa ttcgcggtga tacgcaaatg gcacgcgctg
     1201 tcccagctcc acatctatgt cacgcgcatc ggcgaaggcg cgatccaggt ccagcccgga
     1261 gcgcattgcc tggatcctga gatggtcttc ctcattcacc attatcgcaa cgtcgcgacc
     1321 gacgtgcacc gccgccccgc tccgcggcgg cgcgccggta tcgagcccag caagctcctt
     1381 gctgacgacg tggcgctcat gcagcagcag acggtccggc tcttccagct ggtcgacccg
     1441 tacgagcacg ccatcgcgtg cggccggaat cacggcaagc gcgtccctga cctgggaaag
     1501 caccctcagg cgctcgccct ctctcgcgcg ccccgagaac gcgtacccct cgacgttgcg
     1561 ggcgagacgc acccgggtgg aaagaacgac gcctgcctgc tcgcccgtac cgtccatcca
     1621 gccgagcccg ccgcctggca gcgtttccgg atcgaagctc attcgatcgc ccggagctgg
     1681 tcccgtagcg aagccgcgag ctcgaattcc tcgttccgga tcgcacgctc gagccgctcg
     1741 cgcagccggt ccggcgatgc cggaattggc gcttcgagcg caccctgtgc gccagtgtac
     1801 tctcgacccc tgtgctgccc ctggccatgc accttccgga gcagctcacg aaggctttgc
     1861 tcgaacgccg tatagcagta cgggcaccca agccggcccg tctggcggaa gtcgcgcaga
     1921 gtggatgagc agaacgagca gcgtacggca tcggtctgcg acggcgatat gtgttgctgg
     1981 accgactgga gaaaatccgt taccgcaggt ggcggcgccg ataccgacgc ctgcagcccg
     2041 cgctcggctg cgcactgttc gcagagccgg acctgacgca cgccgttccc gtcgatctcc
     2101 gtgacggtta tgaccacgtc gttttccttg caaacctcac acagcaccga tccagcctcc
     2161 tccctcaccc cgcacgattt tcgacaatct tccttccttc aactgataca ccgctcgcgc
     2221 cctgtcggcc agggacatgt tgtgcgtgac gacgaccatc cccacgccga gatctcgcac
     2281 gacttcggcc aacaggtcgt gcagccgttc gccgttcgcg aggtccagat taccagacgg
     2341 ctcatcggcc agaacgacac cgggcgacgc cgccagcgca cgagcgaccg cggtccgctg
     2401 ttgctccccg ccgctcagct cgcccggccg gtggtgcagt cgcccaccga gtcccacacg
     2461 ctgcagaagc gacgttgccc gtgcctcggc aaccgccggt gcctcgcccg cgatccgaag
     2521 cggaagcgaa acgttttcca gggccgagaa ttcacgtagt agatggtgaa actgaaacac
     2581 gaaccccaca ccccgattcc gcactgccgc aagctcttcg tccgaacgat cggacaaacg
     2641 acggtcggat agcagcacat caccggaagt tggcctgtcc agcccgccca gtatgtgcag
     2701 cagcgtgctc tttcccgaac cgctctcgcc gatgatcgca agcatctcac ccgattcgac
     2761 gcgtagatcg accccgcgca gcacatccag cgcgacaccg tcgccgccaa tgtaacgctt
     2821 ggtcacgccg cgactttcca gaaccgttgt cattccgacc gaatcgcgtc gacgggatac
     2881 agtttggccg cctgtatagc gggataaagc gtagcgagtg ccgcaatgat gagactcgca
     2941 acgacaatca atatcacgtc gcgcggttgt gtcgtcaccg gtagatgatc tatgaaatat
     3001 accgacgggt caagcttgat gaacttgtat ctgtcgagtg caagcgcacc cgcaaagcca
     3061 agcaacagac caagcccggt tccaaccgcg ccgatgacga gcccctgcac cagaaagatg
     3121 ttccggatcg ctgacgacgg cagccccatc gccttgagta ttccgatctc gcgcgtcttg
     3181 tcgtgaacca ccatcgagag cgtactcacg atgttgaacg cagccacgat gacgatcaac
     3241 aggagtatca cactcattcc gagcttctcc agcttgagcg cctggaacaa cgaatggttc
     3301 tgctcctgcc agtcgacggt gcgatatgga aagccgaggt gatcggtgat cgcggtcgca
     3361 accacaccag cgttccacct gtccttcgtg ctcacttcaa gtccggtgac ggaactgtct
     3421 attccggcga actcctgcgc ggagcgcaga tctatgtaca cgtacgcgtt gtcgtactcg
     3481 tacatcccgg tctgaaagac tcccgtaacc tcatatcggt acacgcgcgg gatgtatgcg
     3541 ccggtcgcgg cgttctgttg aacaccggca accgagatga gattgatcgt gtcgcccggc
     3601 cacacattga agcgcgatgc gagcagctgt ccaatcacca cgccgtgatg agttccgtcc
     3661 ttcgtatcga acgagaactt cccgcgcacc gcgtgctcgc gaatgctcgt aacctcggga
     3721 tagccggatc ccttgccagg gattcctacc acgtacacac cgctcgcgta cgttctgccg
     3781 gcgttcattg cgccctcgct ctgaacgaac ggcgccgagg cgacgacacc cgggacctgg
     3841 cgaacacgct tgagcgcgaa ccgccatgag tccatcttga gatcgtcgcc gtaggtgagt
     3901 acgcgtatgt ctggactgcc gaccagaatc ttctcccgca ggtcgtgctg cagcccgttc
     3961 atcacaccga tgatgattat cagcgcactc acgccgacga cgacgccggc gatcgcgatc
     4021 acactgatga acgacaacaa cttcgatcca cgccggctcc gcaagtacct ccaggcgatc
     4081 gccagctcca ggcgcgtcat tccggccgca tcgtcggaaa gagaatcacg tcgcggatgt
     4141 gctggattcc ggtgaggtac atgagcaggc gatcgagtcc gatgccaaca ccaccggtcg
     4201 gcggcatgcc atactccatg gcgcgaagat agtcctcgtc gaccccggcg gcttcgagat
     4261 cacccgccgc gcgcagtcgc gcctgaccct cgaaccgctc gcgctggtcg atcggatcgt
     4321 tgagctcgct gaatgcattc gcgagctctc gcccattggc aaacagctcg aaccgctcgg
     4381 tgagccgtgg atcgccgcgc ttgggcttgg ccagcggcga cagctcgact ggataatcca
     4441 ccacgaacgt cggctcggta atcttcgact ccaccagaag ttggaagatt tcgtccatca
     4501 gcttgggccg actcatcgtc gccgcgcgtg gaacgcccag tcgcgtggcg tgctgtatca
     4561 atccgtcatg atcgagcgcg agtatgtcag cgccaagtcc ggcgttgatc gaagcgagcc
     4621 actcgatgcg cctgaacgga gtggtgaata ccggcaccgc atctgcgaac gattctacac
     4681 cgcgcaccgc atcggccgcg gcaactatga gccgctcgac tacgtccatc atcacttcgt
     4741 aatccgcgta cgcct
//
LOCUS       DATIMD010000593         4632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3424119, whole genome shotgun sequence.
ACCESSION   DATIMD010000593 DATIMD010000000
VERSION     DATIMD010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4632
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3424119"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(295..1023)
                     /locus_tag="VLI40_13255"
     CDS             complement(295..1023)
                     /locus_tag="VLI40_13255"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSU98195.1"
                     /translation="MTFHILLAVAAAVAGAVASVVGFGIGSLLTPLLALRVGTQLAVA
                     AISIPHVFATALRFWRLRAHVDRRVLISFGVMSAVGGLTGALLHSFANNRALSIIFGL
                     ILIFVGTSELSGLARRMQFHGAVAWLAGAISGLFGGLVGNQGGIRSAALLGFDVDKQA
                     FVATATAIGLVVDAARMPVYFATQAREITRIWPLILIATVGTLVGTLLGVRTLRRIPE
                     RVFRNIVAVFLLALGAYMTFKVGA"
     gene            complement(1051..2586)
                     /locus_tag="VLI40_13260"
     CDS             complement(1051..2586)
                     /locus_tag="VLI40_13260"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HSU98196.1"
                     /translation="MSNSDTRGANTTEATNTTNTTRRDFLRVSAVAGAGLLVGGCSSD
                     HQSANRTPAATDTGAVADSATRSAAPADVTIRIAPVLVELAPDHIISTVGYNGSVPGP
                     VIRLREGKPVSVQLINDTDTPELVHWHGQIIPSNIDGASEEGTPFVPPHGSRRYTLTP
                     KPAGTRWVHTHAFSGSDTHRGMYTGQFGLVYIEPAHEPGGYDQEVFLATHEWEPFFGA
                     EEMGTDADVWPQGSVPKPPPDPKPNGYEVGYKSFSINGKSLGHGEPVRVKPGQRVMFR
                     ILNASATENIQLALPGHQFEVVALDGNPVPTPKKVSVLALGVAERIDAIVEMNNPGVW
                     ILGTPHDDDRRDGMGIVVEYAGARGAPRWVAPAKAAWDYTQFGTRLTAAHSPTAPDET
                     IPMALGKINGGRSGFNHWTINGQQYEHSTPIELHQGRRYRLAFRNLADDPHPVHLHRH
                     TFELVNVNGKATAGVMKDTVVVPGFGTVDVDFVADNPGPTLFHCHQTLHMDYGFMRLL
                     KYV"
     gene            complement(2650..2997)
                     /locus_tag="VLI40_13265"
     CDS             complement(2650..2997)
                     /locus_tag="VLI40_13265"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HSU98197.1"
                     /translation="MDDKDLYSGLIRLHILHHAVEEPIFGLEMIEELGRHGYRLSAGT
                     LYPILHGLERKGYLKSRQERAGGRVRRVYRATPAGQRALAGATERVRELFGELLEHGT
                     LHHKSPRRGKTAR"
     gene            3721..4530
                     /locus_tag="VLI40_13270"
     CDS             3721..4530
                     /locus_tag="VLI40_13270"
                     /inference="COORDINATES: protein motif:HMM:NF020419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
                     /protein_id="HSU98198.1"
                     /translation="MIMLNDIAVREAFHVALLRRLAPTGGIPRWRLKGGVNLRLFFGS
                     PRYSEDMDLDADLNARLTLRRELIKHLGDSYFRRSLATLGIRDVLTDRTAAKDTETTL
                     RSKLRLVAQGGVPLPTKVEISFRDPRAGDEAVADPVPDAIALRYLEADDLPLVVPHYP
                     RTAALRQKIAALALRTAVQSRDIFDLAILTQQTLIGIDLLWLRARLDDGLLTEAYTRA
                     LAVPEIAFRGEVLEFIDEPARERYATRWEELQLFVADLISAIRETSDARAR"
BASE COUNT          908 a         1350 c         1424 g          950 t
ORIGIN      
        1 gacgaggcgg acgctatcgc cgtaggcgaa catgaggagc cgccgagtcg cgatggcgtc
       61 acagattacc tgattcatta tggggctcgc tggtgcatat gcgcagtcgc ttccgcatgg
      121 gtcgcgccga tacggagcgt gggccgcgaa atggccgggg acggaagcgg gatgttgggc
      181 gaatcacatc ctggtacgct cctgggtggc gcgccgagac tgcaagagtg gcaagcgatg
      241 gtcagagcgt gttgccgccg gtgagtcggt agcacgcagt attgtctgct tccgctatgc
      301 gcctactttg aatgtcatgt acgcgccgag cgcgaggaga aagacggcga cgatgttgcg
      361 gaatacacgt tccggaatcc tgcgcagtgt gcgcacgccg agcagtgtgc cgacgagtgt
      421 acccactgtg gcgatgagaa tcagcggcca gatgcgcgta atctcgcgcg cctgagtggc
      481 gaaatacaca ggcatccggg ccgcatcgac aaccagcccg attgcagttg ccgtcgctac
      541 gaatgcttgc ttgtcaacgt cgaatccgag gagagctgcg gaacgaatgc cgccctgatt
      601 ccccacaaga cctccgaaca ggccggagat agcgccggcg agccatgcga cagcgccgtg
      661 aaactgcatg cgccgcgcga ggcccgacag ctcactcgtt ccgacgaaga tgagtatgag
      721 gccaaagatt atggagagcg cgcggttgtt ggcgaacgaa tgcagcagcg cgcccgtaag
      781 gccgccaact gcgctcatca cgccaaagct tatcagcact cggcgatcaa cgtgcgcacg
      841 aagtcgccag aacctgagag ccgtcgcgaa gacgtgtgga atcgagatcg cggcaacggc
      901 gagctgtgtg ccgacacgta gcgccagcaa cggcgtgagc agacttccga tgccgaatcc
      961 gaccaccgac gcaacagcac ccgccacggc tgcggcgact gccaggagaa tgtgaaacgt
     1021 catcgcgtca gcggcaggtt ctacgcaaca tcacacgtac ttgagcaggc gcatgaatcc
     1081 gtaatccatg tgcagcgttt gatggcagtg gaagagcgtt ggcccagggt tgtcagctac
     1141 aaagtccaca tccaccgtac cgaaaccagg aacgacgaca gtgtccttca tcacaccagc
     1201 ggtagccttg ccgttcacgt tgacgagctc gaacgtgtgc ctgtggagat gcacaggatg
     1261 ggggtcgtcg gccaggttcc ggaacgcgag gcggtagcgt cgtccctgat gcagctcgat
     1321 cggcgtgctg tgctcatact gctgcccgtt gatcgtccag tggttgaagc cactccgccc
     1381 accgttgatc ttgccgagcg ccatcgggat cgtctcgtca ggagctgtcg gcgagtgcgc
     1441 cgcagtgagc cgtgtcccga attgagtgta gtcccacgct gctttcgcgg gggcgaccca
     1501 tcgcggggcg ccacgcgctc ccgcatactc cacaactatc cccatgccgt cgcgacgatc
     1561 gtcgtcgtgc ggagtgccaa ggatccagac gccgggattg ttcatttcta caattgcgtc
     1621 gatccgctcg gcgactccca gcgccaggac actcaccttt ttcggcgtcg gaacaggatt
     1681 gccgtccagc gccactacct cgaactggtg acccgggaga gcgagttgaa tgttctcggt
     1741 cgcgctggcg ttcagaatgc ggaacatcac gcgttgcccc ggcttcacgc gtacaggctc
     1801 gccgtgtccg agcgacttcc cgttgatcga gaaggacttg tagccaactt catagccgtt
     1861 cggtttggga tcgggaggtg gcttggggac ggagccctgc ggccagacat ctgcgtctgt
     1921 ccccatttcc tccgcaccga agaacggctc ccactcgtgt gtcgccagga acacctcctg
     1981 gtcgtatccg cccggctcgt gcgcaggctc gatgtagacg aggccgaatt gtccagtgta
     2041 catgccgcgg tgagtatcag aaccggagaa cgcgtgagtg tggacccagc gcgtgccagc
     2101 cggcttggga gtgagcgtgt agcgtcgcga cccgtgcggt ggaacgaacg gtgtgccttc
     2161 ttctgaagcc ccgtcgatgt tcgatggaat gatctggccg tgccagtgca cgagctcagg
     2221 cgtgtcagtg tcattgatca actgaaccga cacaggcttt ccttcccgca gccggattac
     2281 cggtccgggg acgctgccgt tgtagccgac tgtactgatg atgtggtccg gtgcaagctc
     2341 gacgaggaca ggtgcgatgc ggatggtgac gtctgccgga gcggccgacc tggtcgccga
     2401 atctgctact gcgccagtat cggttgcggc tggcgtgcgg ttcgccgatt gatgatcgct
     2461 cgaacagcca cccacgagca gtccagcacc ggctaccgcg cttacccgga ggaaatctct
     2521 tcgcgtggtg ttggtcgtgt tggtcgcctc ggtcgtattc gcgccccttg tatcgctgtt
     2581 gctcatcagc tcactcacct tttcgtttcg ttgatgttct tgaagtcagc gccagcatga
     2641 aagcccgtat cagcgtgcag ttttcccgcg tcgtggcgat ttgtggtgca gcgtcccgtg
     2701 ctccaacagt tcaccgaata gttcgcgtac acgctccgtg gcacccgcga gcgctcgctg
     2761 tccagcgggt gttgcacgat agacacggcg cacacgtccc cccgcacgtt cctgcctcga
     2821 tttcagatat cccttgcgct ccaggccgtg gaggatcgga tacagtgttc ccgcgctgag
     2881 ccggtagccg tgccgtccga gctcttcaat catttccagc ccgaagatcg gctcctccac
     2941 ggcgtgatgg aggatgtgca ggcggatgag tccggagtag agatctttgt cgtccatgag
     3001 gggtccggga tggcgcgagg acggggagca tatcgaatgc cgctatcgaa gttcgatata
     3061 taataccggg cttggcctcg gcgtgacagt ccaaatgcag tccttcccgg ggactatccg
     3121 tactggaccg gcgtgcgttg cgtcgggtgg gatcgaggag agcacgctgt agctgttgga
     3181 cggcttaccc ggtcgccggc ggatcatgct cgtacgccgg aatcgcgtgc tggcgaaaat
     3241 tcgcggcgcc gaggaaaaac ggccacattt gtggccccgc atgcgcgaaa cgccgatcga
     3301 agccgaccgg cgaacgcgag ctaactcatt gcaatgatgt ctgttatgtc cagtcggggt
     3361 ggccggattt gaaccggcga cctcttgctc ccgaagcgtg ggtggggaag cgttgtcaga
     3421 ggctaagtgg cgcaatcgcg cgagtttaca cccgacctag cgcgaacgaa gtgagcgtac
     3481 ttcgcgccgt tcgcccggaa ttgcggcccc agcggcccca tttcatccgc atcttgaaaa
     3541 acattaatgt cgccgctgat ttgcgcctgt agcgatcgat ctgggatcga tctgctcagc
     3601 gccacttaat ttgccattgc tattccagag tggagaggcg gtgcatccgc agctggaggt
     3661 cgcgtccgac tacggctatt atacgaagaa acttgcgaaa taagcaagtt ttattatata
     3721 atgatcatgc taaatgacat cgctgtccgt gaggctttcc atgtcgcttt gctgcgtagg
     3781 cttgctccga cgggcgggat tccgcgatgg cggctaaagg gcggggtcaa tctccgtctg
     3841 ttctttggca gtccacggta ctctgaggat atggacttgg atgccgatct aaatgcgcga
     3901 ttaactcttc gccgagaact tatcaagcat ttaggagact cgtatttccg acgatctctt
     3961 gcaacccttg ggattcgaga tgttctcacc gatcggaccg cggccaaaga caccgagacg
     4021 acgttacgat ccaaactgcg cctggtcgcg cagggcggtg ttccgctgcc aaccaaggtc
     4081 gagatatcct tccgtgatcc gcgtgcaggg gatgaagccg ttgcagaccc cgtacctgat
     4141 gcaattgcac tacgctacct ggaggcagat gacctacccc tcgtggtgcc acactatcca
     4201 cgaaccgcgg cactccgcca aaagatcgcc gcccttgcgc ttcgaacagc ggtacagtct
     4261 cgcgacatat tcgatctggc gattctgacg cagcagacat taatcggcat cgatctgttg
     4321 tggctgagag cacggcttga cgacggactg ttgaccgaag cgtatacgcg tgcgcttgct
     4381 gtgccggaga tagcattccg aggcgaagtg ctggaattta ttgatgagcc agcgcgtgag
     4441 cgctacgcca ctcgatggga agagctacaa ctcttcgtag ctgatctcat aagcgcgatc
     4501 cgagaaactt cggacgcgag agcgcgatga gtaaagttgc cgacgcggtt ttccgctcac
     4561 tcattcctga ttctccagta ttcactacac gcgatgctgc cggtgccgct caggtgaccg
     4621 atgatgtcgc at
//
LOCUS       DATIMD010000594         3813 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4872625, whole genome shotgun sequence.
ACCESSION   DATIMD010000594 DATIMD010000000
VERSION     DATIMD010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3813
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4872625"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..814)
                     /gene="ccsA"
                     /locus_tag="VLI40_13275"
     CDS             complement(152..814)
                     /gene="ccsA"
                     /locus_tag="VLI40_13275"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HSU98199.1"
                     /translation="MKFSKLGVVAVLAVICAYVRAIYFTPFDALQGPAQKILYVHAPS
                     AWVGLYLAFGLVFITSVLYLWLKDPKLDRVASSSAEVGFVFTSVVLMTGPLWAKPIWG
                     AYWTWDARLTLTLFLWFIYAGYIILRGAIDDFEMRARFSAVLGILGALLVPFIHLSVY
                     FFRTMHPMPVLLKPSAPSMPSDMVITLVGAFCALTLLYAWLLHERYLLATERDAALEG
                     RA"
     gene            complement(811..1500)
                     /locus_tag="VLI40_13280"
     CDS             complement(811..1500)
                     /locus_tag="VLI40_13280"
                     /inference="COORDINATES: protein motif:HMM:NF015344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HSU98200.1"
                     /translation="MRRAPGFVGSALAIARKDALIELRSRSVILSALAFAVLSITIFF
                     FAWDPTAVASIDLAPGVLWVIFTFSGLLGLHRSFGVEQPTRAMDALLASPVDREAIYL
                     GKLIANLAFVVLVQAISLPAVALLYNVPIGGYIWPLIGVVLLASVGLVAVGTLFSSMA
                     VSTRLAELLLPLLALPFFVPVILPAAQATARIMNGRAVSEVSGYISILGAFDVVFLVV
                     CTLLYPYTLEQ"
     gene            complement(1529..2242)
                     /locus_tag="VLI40_13285"
     CDS             complement(1529..2242)
                     /locus_tag="VLI40_13285"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU98201.1"
                     /translation="MTEESLKATDLVRNFGARSAVSGVSLTLVRGDCLALFGPNGAGK
                     TTLLRMLGGLLRPTSGSAAIEGIPLPGGAEVRARVGLVSHQTMLYDTLTARENVEFSA
                     RMYGVPHVREAADDVLARLGAAPFADVRVRSLSRGMQQRVSVARAIVHRPSILLADEP
                     FTGLDAAGASALTGMLATLRDSGATIIIVTHNLEEALALCTAAAIMREGRFVRLDHAP
                     IPAREEYTALYRELSVDAA"
     gene            complement(2342..2494)
                     /locus_tag="VLI40_13290"
     CDS             complement(2342..2494)
                     /locus_tag="VLI40_13290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98202.1"
                     /translation="METKQHGTDFPAALTGLIVGGCFVFAILFGIVVLTNHHYASEKP
                     AAAATK"
     gene            complement(2500..2979)
                     /locus_tag="VLI40_13295"
     CDS             complement(2500..2979)
                     /locus_tag="VLI40_13295"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSU98203.1"
                     /translation="MKQATFETNKGTMVAELYSGDAPKTVENFEKLANEGFYDGVKFH
                     RVIPEFVVQGGDPLSRDLPAGNPRIGTGGPGYKIKCETKGNPRTHEFGALSMAHAGKD
                     TGGSQFFIVLDEKNTKHLNGVHTVFGKVTQGEDVVRQIRQNDVMNKVRVTDTATTTE"
     gene            complement(2976..3617)
                     /gene="nth"
                     /locus_tag="VLI40_13300"
     CDS             complement(2976..3617)
                     /gene="nth"
                     /locus_tag="VLI40_13300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HSU98204.1"
                     /translation="MTLQPASARAPLIFTRLRRAYPDAHCELDHTNAYQLLVATILSA
                     QCTDKRVNLVTPALFQRYPDAEALAMADPREVEELIKPTGFFRNKTRSLVGMAGGVLD
                     RFGGAVPDRMEDLITLPGVGRKTANVILGTAFDKPAGVVVDTHVGRLSRRLGLTRLSD
                     PVKVERVLAKLFPQKNWTLLSHLLIFHGRRVCLARRPRCAECVLNDLCPSSEV"
BASE COUNT          823 a         1230 c         1114 g          646 t
ORIGIN      
        1 tcctggaatg tcaggccctg ctccaacgac gaagactatt ccttgcgccg ccacttacgc
       61 ctcctccaca gcaaacttcc tgcgtagcac gtgtaaacca gcccggctac ggtgtacgcg
      121 agatgatacc agtatgcgtc ctgtggtggc atcaggcccg cccctccaat gcagcgtcac
      181 gttcggtcgc gagcaagtac cgctcatgca gcaaccacgc atacaacaga gtcaacgcgc
      241 agaacgcacc gacgagcgtg atcaccatgt ccgacggcat cgacggcgca ctcggcttga
      301 gcagcactgg catcgggtgc atggttcgga agaagtacac gctcaagtgt atgaacggga
      361 caagcagcgc gccgagaatt cccagcaccg ccgagaaccg cgctcgcatc tcgaaatcat
      421 cgatcgcgcc gcgcaggatg atgtagcccg cgtagatgaa ccagagaaac agggtaagcg
      481 tcaggcgcgc atcccatgtc cagtacgcac cccatatcgg cttcgcccag agtggaccgg
      541 tcatcagcac aaccgacgtg aagacgaatc ccacttcagc agaactcgag gcaacacgat
      601 cgagcttggg gtccttgagc cagagataca gcacgctggt aatgaacacc agcccaaatg
      661 ccagatacaa cccgacccat gccgacggtg catgaacgta cagaatcttc tgcgccggac
      721 cctgcaacgc gtcgaacggc gtgaagtaga tcgcgcggac gtacgcgcag atcacggcga
      781 ggaccgccac aactccaagt tttgagaact tcattgttcc agagtgtatg gatataacag
      841 agtgcagaca accaggaaca cgacatcgaa cgcgccgagg atcgagatgt aacccgacac
      901 ttccgagacc gcgcgcccgt tcattatccg cgcggtagcc tgcgcggcgg gaaggatcac
      961 aggaacgaaa aacggaagcg ccaacagcgg cagcagcaac tcggcgagcc gcgtactgac
     1021 cgccatcgag gagaacagcg tccccaccgc gaccagcccg accgacgcca acagcacgac
     1081 tccgatcagc ggccagatgt agccgccgat cggcacatta tatagtagcg caaccgccgg
     1141 cagcgatatg gcctggacca gtacgacgaa cgcaagattc gcgatcagct tcccgagata
     1201 aatcgcctcc cgatccaccg gcgacgccaa cagcgcatcc attgcccgcg tcggctgctc
     1261 caccccgaac gaccggtgca ggccgagcag tcccgaaaag gtgaagatca cccagagtac
     1321 gccaggcgca agatcgatcg atgccaccgc cgtcggatcc caggcaaaaa agaatatcgt
     1381 gatcgacagg acggcgaacg cgagcgcgga gagaatgacg cttcgcgacc gcaactcgat
     1441 caacgcatcc ttgcgcgcga tggcgagcgc cgatcccacg aatccgggtg cgcggcgcat
     1501 aaccggcgcg acgggcgtac caggcgtgct aggcggcatc gaccgacagc tcacgataca
     1561 gcgcggtgta ttcctcgcgc gctggaatcg gtgcatggtc caaccgaacg aatcttccct
     1621 cgcgcattat cgccgccgcg gtgcacagcg cgagtgcctc ctcgagattg tgcgtgacga
     1681 ttatgatcgt cgcaccggaa tcgcgtaagg tggcaagcat tccggtgagc gcagacgcac
     1741 ctgccgcatc gagaccggtg aaaggctcgt ctgccagcag gatcgacggc ctgtgcacta
     1801 tcgcgcgcgc aaccgagacg cgctgctgca taccgcgact caacgatcgc acgcgaacgt
     1861 cggcgaatgg cgctgcgccg agtcgtgcga gcacatcgtc ggccgcctcg cgcacgtgcg
     1921 gaacaccgta catgcgcgcg gaaaattcca cgttctcgcg cgctgtaagc gtgtcgtaca
     1981 gcatggtctg gtgtgatacc agaccgacgc gtgcacgcac ttccgcaccg ccagggaggg
     2041 ggatgccctc gatcgccgca ctgcctgaag tggggcgcag cagaccgccg agcatccgga
     2101 ggagcgtcgt cttgccagca ccgttgggac cgaacagggc gagacagtca ccccgcacaa
     2161 gcgtgagcga caccccgctc acagcgctac gcgcgccgaa gttgcgaacg aggtctgttg
     2221 ccttgagtga ctcttcagtc atcgtgcgca acatcggcag cgctcaatag cagcgcacaa
     2281 ccgcgccgcg gcgcccgctc gcggggaccg atgccccgaa cccgcgcgag cgatgcgatg
     2341 attacttggt cgccgcggct gccggcttct cgctcgcgta gtgatgattc gtgagaacga
     2401 cgatgccgaa gagaatagcg aacacaaagc atccgccgac aatcagcccg gtgagcgcgg
     2461 cggggaagtc cgtaccatgc tgcttcgttt ccatcgtctc tactccgtgg ttgtggctgt
     2521 atcggtaaca cgcaccttgt tcatcacgtc gttctgccgg atctggcgca cgacgtcctc
     2581 gccttgcgtg accttgccga acaccgtgtg cacaccgttg aggtgcttgg tgttcttctc
     2641 atccaggacg atgaagaact ggctaccgcc ggtgtccttg cccgcatgcg ccatggacag
     2701 cgcaccgaac tcgtgcgtgc gtggattacc cttggtctcg cacttgatct tgtagccggg
     2761 accgccggtg ccaatccgcg ggttgccggc cggaagatcg cgcgacagcg gatccccgcc
     2821 ctgcaccacg aactccggaa tcacgcggtg aaacttcacc ccgtcgtaaa agccttcatt
     2881 ggccagcttc tcgaagttct cgaccgtctt gggggcgtca ccggaataca gctcggcgac
     2941 catcgtcccc ttgttcgtct caaatgttgc ttgcttcata cttcactcga tggacatagg
     3001 tcattcagca cgcactctgc gcacctcggg cgtcgggcca gacagacgcg gcgtccgtga
     3061 aatatcagca gatgagacag cagagtccaa tttttttgcg ggaagagctt cgcaagcacc
     3121 cgttccacct tcacggggtc tgacagtcgg gtcaggccaa gccgccggct gagtcgcccc
     3181 acgtgcgtgt cgacgacgac cccggcgggt ttgtcgaatg ccgttccaag gatgacgttc
     3241 gcggtcttcc gacccacacc cgggagcgtg atgaggtctt ccatccggtc ggggacggca
     3301 cctccaaacc gatccagcac gccgccagcc atgccaacga ggcttctggt cttgttgcga
     3361 aaaaatccgg ttggcttgat caattcctcc acctcgcgcg gatcggccat cgccagcgct
     3421 tcggcatcgg gatatcgctg gaacagcgcc ggcgtaacca gattcacccg tttatcagtg
     3481 cactgggcgc tgaggatcgt cgctacgagg agctgataag cgttcgtgtg gtccagctcg
     3541 caatgcgcgt cgggatacgc tcgcctgagc cgcgtgaaga tgagcggcgc gcgtgcagaa
     3601 gcgggttgca atgtcattgt cgctgaaact aagggcggcg gcgccaagtc gtcattcccg
     3661 ctgtagggcg cggataaatc cgtgcctcgg gaatccacgt gtccgccgtc attcccgcga
     3721 aagcgggagc ctagccccgt cattcccgcg aaagcgggaa tccatctgct gccgatcagg
     3781 tttgcggtac catcgaatcc aaagatcgat aac
//
LOCUS       DATIMD010000595         2044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3715286, whole genome shotgun sequence.
ACCESSION   DATIMD010000595 DATIMD010000000
VERSION     DATIMD010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3715286"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..182)
                     /locus_tag="VLI40_13305"
     CDS             complement(<1..182)
                     /locus_tag="VLI40_13305"
                     /inference="COORDINATES: protein motif:HMM:NF013428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HSU98205.1"
                     /translation="MLESAALPEPRFTPATKAESGHDENISRAEMRDRLGPVADRLAE
                     LSLRLFRFGSQVAENAG"
     gene            complement(183..608)
                     /locus_tag="VLI40_13310"
     CDS             complement(183..608)
                     /locus_tag="VLI40_13310"
                     /inference="COORDINATES: protein motif:HMM:NF013428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HSU98206.1"
                     /translation="MSVPLSTTSLPLPVLRHGKVRDVYEVDADRVLLVATDRVSAFDV
                     VLDQPVPHKGAVLTQLTAWWLGQISDVPHHMISADASEIVSLVPSLAAHRETLQGRAM
                     LSRRANVFPVECVVRAYLSGSGWKDYRATGKLAGEPLPP"
     gene            complement(605..2032)
                     /gene="purB"
                     /locus_tag="VLI40_13315"
     CDS             complement(605..2032)
                     /gene="purB"
                     /locus_tag="VLI40_13315"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HSU98207.1"
                     /translation="MHDTYSSPLSARYASRAMLELWSPHERHLLWRQLWIALAESEME
                     LGIDIPQSAIAEMRAAANDIDFDAAARYEERFRHDVMAHVHTFADAAPSARRFIHLGA
                     TSAFVTDNADLILMRRALTLLRGRAMDVVRALSTFADQWKDEPTLGYTHIQPAQLTTV
                     GKRATLWIQDLVLDIRDIQYRIDSLPLRGVKGTTGTQASFLRLFNGDHAKVRELDRLV
                     TSRMGFSSSIPVSGQTYTRKLDAGVLGAVAGLAASAAKFASDMRLLQSFGEMEEPFEK
                     EQIGSSAMAYKRNPMRSERINSLARFVLSLESNANETHSVQYFERTLDDSANRRLVIP
                     EMFLATDAIMLIMRNVASGIEVHPARIARRVADELPFMATEELIVRAVEAGGDRQAAH
                     EVIRKHSVAAATAVKNGASRNDMLDRLAADPDYAVRIDDLQNVLDARNFIGRSSEQVT
                     EFLREIVDPLLTEVPETSSTEALRV"
BASE COUNT          372 a          652 c          630 g          390 t
ORIGIN      
        1 cccgcgtttt cggcgacttg ggaaccaaag cgaaagagtc gcagcgacag ctctgcgagt
       61 ctgtcggcga cggggcccag ccggtcacgc atctccgcgc gcgaaatgtt ttcgtcgtgt
      121 cccgattctg ccttggtcgc cggtgtgaag cgcggctccg gcaacgccgc gctttcgagc
      181 attcaaggcg gcaacggctc tcccgcgagc ttgccggttg cgcggtaatc cttccatccg
      241 cttccagaca ggtatgcgcg gacgacgcat tccaccggga atacgttcgc ccggcgggac
      301 agcatcgcgc gtccctgcaa cgtttcgcga tgtgcagcga gcgacggaac gagtgaaacg
      361 atctccgatg cgtccgccga gatcatgtgg tgcgggacgt cgctgatctg gccaagccac
      421 cacgccgtga gctgagtgag aaccgcaccc ttgtgcggca ccggttgatc cagcaccacg
      481 tcgaatgcac tcacacgatc cgtcgcgacg agcagcacac gatcagcgtc gacctcgtaa
      541 acgtcccgaa ccttgccgtg tctgaggacg ggcaacggaa gcgacgtcgt gctcagcgga
      601 acactcatac gcggagcgcc tccgtcgacg acgtctcggg gacttccgtc agcaacggat
      661 ccacgatctc gcgcaggaac tcggtaacct gttcgctcga gcggccaatg aaattgcgcg
      721 cgtccagcac gttttgaaga tcgtcgatgc ggactgcgta gtccgggtcg gcggcgagtc
      781 tgtcgagcat gtcgttccgg ctggccccgt tcttcacggc ggttgctgcg gcgacgctgt
      841 gcttccgaat cacctcgtgc gctgcctgcc ggtctccacc ggcttcgacc gcgcgcacga
      901 tcagctcctc agtcgccatg aacggcagct cgtccgcgac gcggcgcgcg atgcgtgccg
      961 gatgaacctc gatacccgat gcgacgttgc gcatgatcag cattattgca tcggtcgcca
     1021 gaaacatctc cggtatcacg agccgtcgat tggcgctgtc gtcaagcgtg cgctcgaagt
     1081 actgcaccga atgagtctcg ttcgcgttgg actcgagcga cagcacaaag cgcgcgagcg
     1141 aattgatccg ttcggagcgc atcggattgc gcttgtacgc catcgcagat gatccgatct
     1201 gttccttctc gaacggttct tccatctcgc cgaacgattg caacaaccgc atgtcactcg
     1261 cgaatttcgc agcgctcgcc gcgaggcctg ctacggcgcc aagcactccg gcatcgagct
     1321 ttcgtgtata ggtctggccg ctgacgggaa tcgacgacga gaagcccatc ctggacgtga
     1381 cgagcctgtc cagctcgcga accttcgcgt ggtcgccgtt gaacagtcgc agaaacgagg
     1441 cctgagtacc ggtcgttccc ttgacgcctc gcagcggcag cgaatcgatg cggtactgaa
     1501 tgtccctgat gtcgagtacg agatcctgga tccatagcgt cgcgcgcttt ccgacggttg
     1561 tcagctgcgc gggctggatg tgcgtgtaac cgagcgtcgg ctcgtccttc cactgatccg
     1621 cgaacgtcga gagagcgcgg accacatcca tcgcgcgtcc tcgaagcagc gtaagcgcgc
     1681 gccgcatcag tatcaggtcg gcgttgtccg ttacgaacgc gctggtagcg ccaagatgga
     1741 tgaagcgtcg cgcactcgga gcggcgtccg caaaagtgtg tacgtgcgcc atgacgtcgt
     1801 gcctgaagcg ctcctcgtac ctggcggcgg catcgaagtc gatgtcgttt gcggcagcgc
     1861 gcatctcggc gatcgccgat tgcggaatgt cgatcccgag ctccatctcc gattcggcga
     1921 gcgcgatcca gagctggcgc cagagtagat gacgctcgtg cggcgaccac agctcgagca
     1981 tcgcgcgcga cgcgtaccgt gccgacagcg gtgacgaata tgtatcgtgc atctactgag
     2041 tcac
//
LOCUS       DATIMD010000596         3017 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_248257, whole genome shotgun sequence.
ACCESSION   DATIMD010000596 DATIMD010000000
VERSION     DATIMD010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3017
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248257"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..200)
                     /locus_tag="VLI40_13320"
     CDS             complement(<1..200)
                     /locus_tag="VLI40_13320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98208.1"
                     /translation="MGSGPASTTTSTSTGTTASRIASGRSIPKIGVFDATMLVMGGIV
                     GAGIFSNPAVVANMVHSGVLMMT"
     gene            complement(193..1335)
                     /locus_tag="VLI40_13325"
     CDS             complement(193..1335)
                     /locus_tag="VLI40_13325"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSU98209.1"
                     /translation="MSFDIAKEFPWAGSGVTYLNAAATGPLPARTVSELDHWTRLRAE
                     PWKIALDEQFNALAKARELCAGLVGADRDEIALVPNTSTGLNIAAQVLPIARDKVILG
                     YDGEFPANVYPWMAIERRGGARYEQLRLLPNGLPDWDALPARLDRGDVAVVAISWVSF
                     VSGDRADLSAIGAMCRDRKIWFVVDAIQGVGTTLLDVHASHVDILSCGAQKWLLSPWG
                     SGFCYVRRELIQMLEPRTVGWLSVRGAEDFSHMLEYDLTYADDARRFEVATIPYQDMV
                     GMDSSLELLYEIGLEAVAARIHSLAGRLVEGISTIPALSLVTPRDANRRAGIVSFRVK
                     DAEAVSARLNENDVSHSIRGGGVIRLAPHIYNTDQQIDRVLALLNG"
     gene            1500..>3017
                     /locus_tag="VLI40_13330"
     CDS             1500..>3017
                     /locus_tag="VLI40_13330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HSU98210.1"
                     /translation="MSQLSQQPEYDVCIVGSGAGGGMAAYVLTKAGARVALLEAGPEW
                     YSTRDSKMLVPAYASPRRGAGSREKPFGEFDGCIGGWDIEGEPYTTAPGTKFSWWRAR
                     MLGGRTNHWGRISLRFGPDDFRGKSIDGLGDDWPIGYDDIKPYYDEIDKLIGIFGSNE
                     GLRNNPDGIFQPAPRPRCYELMIKQACDKLDITCIPGRLSILTRPLNGRMACHYCGQC
                     GRGCQTNSNFSSPGVLIKPALDTGKLTLITGAMAREVTIDKNGIATGVTYIKIKDGTE
                     QHVRARVVVLAASAFESARLMLNSKSSLFPHGLANSSGIIGKYITDTTGVGLNGFIPK
                     MVNRMPHNEDGSGGNHIYMPWTKDNKKLDFPRGYHIEVGGGFDAPSYGFMGGIQRYPN
                     AGGYGKSLKDDYRRYFGASVGFAGRGEMIPNDDCYCELDPKVVDKYGIPVLRFHWKWS
                     DHEINQAKHMQDTFRSIVAEMGGEVFSPMPTREKEYGLATGGTIIHELGATRMGDD"
BASE COUNT          623 a          979 c          872 g          543 t
ORIGIN      
        1 gtcatcatca gcacgccgct gtgcaccatg ttcgcaacca cggccggatt gctgaagatt
       61 ccggcaccga ctattccgcc catcacgagc atggtcgcgt cgaacacgcc gatcttcggg
      121 atcgaccggc cgctcgcgat cctgctcgcg gttgtgcccg tactcgtgct cgtagtcgtg
      181 cttgccggtc cgctacccat tcagcagcgc cagtactctg tcgatttgct ggtctgtgtt
      241 atatatgtgc ggggcaagac gaatcacacc accgccacga atggaatgcg acacgtcgtt
      301 ttcgttcaac cgcgccgata cggcttctgc gtccttcacc ctgaacgata cgattcccgc
      361 acggcggttc gcgtcacgcg gcgtcacgag agacagcgca ggtatcgtcg atatcccctc
      421 gacgagtcgg cctgccagcg aatgaatgcg cgccgcgacg gcttcaaggc cgatctcgta
      481 caacagctcg aggctcgaat ccatgccgac catgtcctga tatggaatgg tggcaacctc
      541 gaaccggcga gcgtcgtccg cgtacgtgag gtcgtactcc agcatgtgcg agaaatcttc
      601 cgcaccacgt acgctgagcc aacccacggt gcgcggctcc agcatctgaa tcaactcccg
      661 ccgaacatag cagaagccgg atccccaggg agacagcagc cacttctgcg caccacacga
      721 aaggatgtcc acatggctcg catgcacgtc cagcaatgtg gttcccacac cctgaatggc
      781 gtcgaccacg aaccagatct tgcggtcacg gcacatcgca ccgatcgccg aaaggtcggc
      841 gcgatcgccg gacacgaaag acacccacga tatcgcgacg acggcaacat cgccgcgatc
      901 gagcctggcc ggcagcgcgt cccaatcggg aagtccgttc ggtagcagac gcagttgctc
      961 gtaccgcgca ccgcctctgc gttcgatcgc catccacgga tacacgtttg cagggaactc
     1021 gccgtcgtat cccaggatca ccttgtcccg cgcaatcgga agcacctgcg cagctatgtt
     1081 gagccccgta ctcgtattgg gtacgagcgc gatctcgtcc ctgtcggcgc caaccaggcc
     1141 ggcgcacagc tcgcgggctt tcgccagtgc attgaactgc tcatccagtg cgatcttcca
     1201 cggctcggca cggagccgcg tccagtgatc cagctcgctg acggtgcgcg ccggtagcgg
     1261 acccgtcgcc gcggcgttga gatatgtgac gccactgcca gcccagggaa attccttcgc
     1321 tatatcgaat gacatgtcgg taaagttatc gtcagcaggg aaaggttcgc tcccggcaac
     1381 tgttgcgcca gtggtccgta cgatcccgca gcgttgcgag cgccctgatc gcgcactatc
     1441 ttcgcgcccg cgcactgtag cgcgccagaa tctcgcacga ttttcagttg gaggaatgga
     1501 tgtcccagct ttcgcagcag cccgagtacg acgtatgtat agtaggctcg ggcgctggcg
     1561 gtggaatggc cgcttacgtc cttaccaagg caggcgcgag ggtcgcgctg ctggaggcgg
     1621 gacccgaatg gtacagcact cgcgactcca agatgctcgt gccagcctac gcctcgcccc
     1681 gccgcggagc cggctcgcgc gaaaagccat tcggcgagtt cgacggctgc atcggcggct
     1741 gggacatcga gggcgagccc tacaccaccg ctccaggcac gaaattctcc tggtggcgcg
     1801 cccgaatgct cggcggccgc accaatcact ggggccgcat atctctccgc tttggccccg
     1861 acgatttccg cggcaagagc atcgacggac tcggcgacga ctggccgatc ggctacgacg
     1921 acatcaagcc gtactacgac gagatcgaca agctcatcgg aatctttgga agcaacgaag
     1981 gactgcgcaa caatccggat ggaatattcc agcccgcgcc caggccacgc tgttacgagc
     2041 tgatgatcaa gcaggcgtgc gacaagctgg acatcacctg cattcccggc cgtctctcga
     2101 ttctgacgcg tccgctcaac ggccgaatgg cctgccacta ttgtgggcag tgtggccgcg
     2161 gctgccagac caactccaac ttctcgagcc ctggtgttct gatcaagccc gcgctcgaca
     2221 cgggcaagct cacgctcatc accggtgcga tggcgcgcga agtaaccatc gacaagaacg
     2281 gaatcgcaac cggcgtcaca tacatcaaga tcaaggacgg aaccgagcaa cacgttcgcg
     2341 cgcgcgttgt agtgctcgcc gcgagcgcgt tcgaatcggc acgactgatg ctcaactcca
     2401 agtcgtcgct ctttccgcac ggtctcgcca actccagcgg catcatcggc aagtacatca
     2461 cggacacgac cggagtcggc ctcaatggct tcattccgaa aatggtgaac cgcatgccgc
     2521 acaacgagga tggctctggc ggcaatcaca tctacatgcc gtggaccaag gacaacaaga
     2581 agctcgactt cccgcgcgga tatcacatcg aggtcggcgg cggcttcgat gctccgtcgt
     2641 atggattcat gggcggaatt cagcgctatc ccaacgccgg cggctacggt aaatcactga
     2701 aggacgacta tcgccgctat ttcggtgcaa gtgtcggatt cgcggggcgc ggcgagatga
     2761 ttccgaacga cgattgctac tgcgagctgg atccgaaagt cgtcgacaag tacggaattc
     2821 cggtgctccg cttccactgg aagtggagcg accacgagat caatcaggca aagcacatgc
     2881 aggatacctt ccgatcgata gtcgccgaga tgggcggcga ggtcttctct ccgatgccca
     2941 cgcgcgagaa ggaatatggt cttgcgaccg gcggcacgat catccacgag ctgggcgcaa
     3001 cgcgcatggg cgacgac
//
LOCUS       DATIMD010000597         2776 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1697933, whole genome shotgun sequence.
ACCESSION   DATIMD010000597 DATIMD010000000
VERSION     DATIMD010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2776
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1697933"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..856
                     /locus_tag="VLI40_13335"
     CDS             <1..856
                     /locus_tag="VLI40_13335"
                     /EC_number="6.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683271.1"
                     /note="catalyzes the ATP-dependent carboxylation of a
                     covalently attached biotin and the transfer of the
                     carboxyl group to pyruvate forming oxaloacetate; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HSU98211.1"
                     /translation="MHGNMVHLGERECSVQRRHQKMIEEAPSVAVSPELRAEMGATAV
                     RAARAAGYVNAGTCEFLLARDGSYYFLEMNTRLQVEHPVTELVTGIDLVHWQLRVASG
                     QALGFTQDDISPTGWAMECRITSEDPANDFLPSTGRISYLHLPSGPGVRWDGGIEVGS
                     EVSLHYDPMLAKLIVHAPNRELAVERMHRALSELVIGGVETSREFHLRVMEDSEFRAG
                     AIEIQWLERRLASLTTDVGTEDGAMLAALAGALLAESESGVRAAVPSQQEAPLSAWQR
                     TARLESIR"
     gene            856..2103
                     /locus_tag="VLI40_13340"
     CDS             856..2103
                     /locus_tag="VLI40_13340"
                     /inference="COORDINATES: protein motif:HMM:NF017743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98212.1"
                     /translation="MSRTVSLTIDTIAAGGDGVARNEGLVVFVPRTAPGDVITASVAG
                     KGHFARGSLRTVLRPSPARIDPPCPHYTQERCGGCQIQHMQYAAQLDAKQRIITDAML
                     RIGKRDVSPPEVVPSPDEWRYRTKLTLAMRRRSGGWIAGLHPYDDPGRVFALADCPIT
                     DRRVVATWRELMRASELFPDAASLRGSVRWTDDGPTFVLIGATRWSDHARFFEAVPTL
                     AALYWEPEDAPRKLLGDRRVHTTPAASFAQVNPVVAAVLREYVVGVVRSFHPASVIDA
                     YSGAGDLAVNLATTGISVVAIELDRDAALWAEKRLAPPSRSIVGRVEEVLPRLAPADV
                     VVVNPPRSGLHVDVTETLMDTPDIRAIVYVSCDPATLARDVARLSGYSIQSIRAFDMF
                     PQTSHVETVCVLTPARSTDGAAS"
     gene            2100..2600
                     /locus_tag="VLI40_13345"
     CDS             2100..2600
                     /locus_tag="VLI40_13345"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HSU98213.1"
                     /translation="MKFLVDVNGARHSVVTDKGAATVDGATESATLDVANGTPARTLR
                     IGDRVVRVVVHAREGKGRYVLDIDGHRYHVEALGERARAIQELAARSAPPAGPAPVIA
                     PMPGLVVRVNVAVGDAVTAGQGVLVMEAMKMENELRASAAATVKSVRVTQGTAVEKGT
                     VLIELE"
BASE COUNT          485 a          823 c          935 g          533 t
ORIGIN      
        1 catgcacggg aacatggttc acctgggcga gcgcgaatgc tcggttcagc gccgtcatca
       61 gaagatgatc gaggaagcgc cgagcgtcgc tgtgagcccg gagctgcgcg cggagatggg
      121 cgcgaccgct gtgcgcgccg cgcgcgccgc cggttacgtg aatgccggga cgtgtgagtt
      181 tctgctcgcg cgcgacggaa gctactactt cctcgagatg aacacgcgac tccaggtgga
      241 gcatccggtc acggagctcg tgactggcat cgatctcgtt cattggcagt tacgcgttgc
      301 atccggacag gcgcttggct tcacgcagga cgacatctcg ccaacaggct gggcgatgga
      361 atgtcgcata acgagtgaag accccgccaa cgatttcctc ccatcgacgg gacgcatctc
      421 gtatctgcac ctgccttcgg gcccgggcgt ccgctgggat ggcggaatcg aagtcggcag
      481 cgaggtgtcg ctgcactacg atcccatgct cgcgaagttg atagttcacg cgccgaaccg
      541 cgagcttgcc gtcgagcgga tgcatcgtgc gttatcggag ctggtgatcg gaggtgtgga
      601 gacgtcgcgc gaattccatc tgcgtgtgat ggaagattcg gagtttcgtg ctggcgcaat
      661 cgagattcag tggctcgagc gtcgcctggc gtcgctcacc acggacgtgg gaaccgaaga
      721 tggtgccatg ctcgccgcgc tggcgggcgc attgcttgcg gagtcggaat ccggcgttcg
      781 tgccgccgtt ccgtcgcagc aggaagctcc gctgtctgcg tggcaacgca ctgcacgcct
      841 ggaatcgatc cggtagtgtc gcgtaccgta agtctgacga tcgacacgat cgcggcgggt
      901 ggcgatggcg tggcacgcaa cgagggactc gtcgtgttcg ttccgcgcac cgctccgggc
      961 gatgtgataa cggcgagcgt ggcgggcaag ggtcacttcg cgcgcggttc gctacgtacg
     1021 gttctgcggc cgtcaccggc caggatcgac ccgccatgtc cgcactacac gcaggagcga
     1081 tgcggcggtt gtcagatcca gcacatgcag tatgcggcgc agctcgacgc aaagcagcgt
     1141 atcatcaccg acgcgatgct ccggatcggc aaacgcgatg tcagtccacc cgaagttgtg
     1201 ccgagccccg acgagtggcg ctatcgcacc aaattgacgc ttgcgatgag gcggcgatcc
     1261 ggtggctgga tcgcgggcct gcatccctat gacgatcccg gtcgggtctt tgcgctggca
     1321 gattgcccca taacggaccg gcgtgtcgtg gccacgtggc gcgagctcat gcgtgcgtcc
     1381 gagctcttcc cggatgctgc gtcactgcgg ggaagcgtgc gatggaccga cgatgggccg
     1441 acgttcgtgc tgatcggcgc cacgcgatgg agcgatcacg cacggttttt cgaggctgtt
     1501 ccgacactcg cagcgctgta ctgggagccc gaagacgcgc cgcgaaaact gctcggcgac
     1561 cgtcgagttc acacgacgcc ggccgcgtcg ttcgcgcagg tcaacccggt cgtcgccgcg
     1621 gtgttgcgtg agtacgtcgt tggagtcgtc aggtcgttcc atccggcgag cgtgatcgat
     1681 gcgtactccg gtgcgggcga ccttgcggtg aatctggcaa ctactggaat ttcagtagtt
     1741 gcgatcgagc tcgatcgcga tgcggcactg tgggccgaga aacggctcgc gccgccttcg
     1801 cgctcgatcg ttggccgggt cgaggaagtt ctgccgaggc ttgctccggc ggacgtggtc
     1861 gtggtcaatc ctccacgaag cggtctccac gtcgatgtca ccgagacact catggacacg
     1921 ccggatatcc gggcaatcgt ctacgtcagc tgcgatccgg ctacgctcgc gcgcgacgtt
     1981 gcgcgactgt ccggttattc gatccaatca atcagagcgt tcgatatgtt cccacagacg
     2041 tcccatgtcg agacggtctg cgtgctgacg ccggcacgct cgaccgacgg tgcagcatca
     2101 tgaaatttct agtagatgtg aacggtgcgc ggcattcggt agttaccgat aaaggcgccg
     2161 cgaccgttga cggtgcgacg gaatcggcga cactggatgt cgcaaacggt acaccggcgc
     2221 gaacgctgcg catcggcgat cgtgtcgtgc gagtggtcgt gcatgcgcgc gaaggcaagg
     2281 gccggtacgt tctcgacatc gatggtcacc gttatcatgt cgaagcgctg ggcgagcgcg
     2341 cacgcgcgat ccaggagctg gccgcgcgat ctgctccacc ggccgggcct gcccccgtga
     2401 tcgccccgat gccgggtctc gtggtgcgag tgaacgtcgc cgtcggcgac gctgttacag
     2461 cggggcaggg tgtgctcgtt atggaagcga tgaaaatgga aaacgagctg cgcgcgtctg
     2521 ccgccgcgac cgtgaaatca gttcgcgtga cgcaggggac ggcggtggag aaaggaacgg
     2581 tgttgatcga gctggagtag cctggctgct acctcgtcca gatatagatc acactgcatt
     2641 cagaatcgcg cagactggcg ggcgtttctg caccgtcctt gtaaatctcg atcgcggcta
     2701 tatcctgtgg cgatattccg tccatcgaac ctgtcgccgc cgcgagattg gatcgaccga
     2761 gtgtgttgtc gacaat
//
LOCUS       DATIMD010000598         7907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_539952, whole genome shotgun sequence.
ACCESSION   DATIMD010000598 DATIMD010000000
VERSION     DATIMD010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7907
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_539952"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(281..2536)
                     /locus_tag="VLI40_13350"
     CDS             complement(281..2536)
                     /locus_tag="VLI40_13350"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin receptor-like dimerization
                     domain-containing protein"
                     /protein_id="HSU98214.1"
                     /translation="MRFFSLPILASLGVLAVPLVAASPPPSGDILGFTPASSRVQRDW
                     ENKFRALPDPARMRADMKLLSARPHHVGSPYDRQNAEWILKQFKDAGWDAHIETFNVL
                     FPTPKQRLVELVAPTRFTAKLQEPPVPGDPTSSQTSEQLPTYNAYSIDGDVTGPLVYV
                     NYGIPADYDELARRGVSVKGAIVIARYGQSWRGIKPKVAAEHGAIGCLIYSDPGDDGY
                     NEGDVYPKGPMRPADGVQRGSVMDMPTYPGDPLTPGVGATKDAKRLALKDVKVFTKIP
                     VLPISYGDAKPLLAAIGGDVAPRDWRGALPLTYKIGPGPARVHLVVKSNWDIKPIYDV
                     IGQLRGSSSPDEWVVRGNHHDAWVNGADDPIAGQIALLEEVRAMGALVKQGWHPKRTI
                     IYAAWDGEEPGLLGSTEWAETHAAELAAHAVAYLNSDTNGRGYLGVSGSHVLEKFING
                     VMRDITDPETGSSVESRSRARSLLHASAATRKDIRNRADLHIGALGSGSDYTAFLQHV
                     GVPSMNLGFGGEDQGGVYHSVYDDFYWYTHFSDTSFVYGKALAQTAGTAVMRLADADV
                     IPYDFTDLAQTVGTYVTELKTLHKTMASDVVEHNREVADSGFFLTNDPRHPFTLPKDE
                     AVIPDLDFAPLDSASAALTRAAQRYQTAFTQSMDGAATASFIKLNTDLLQSERLLLSD
                     AGLPNRPWFKHLLYAPGYYTGYGVKTIPGVREAIEQKEWPLATTEIGRVSAALNAEAA
                     LVDRAATELGH"
     gene            2641..5184
                     /gene="hrpB"
                     /locus_tag="VLI40_13355"
     CDS             2641..5184
                     /gene="hrpB"
                     /locus_tag="VLI40_13355"
                     /inference="COORDINATES: protein motif:HMM:TIGR01970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HSU98215.1"
                     /translation="MIRPVDTTGERLPGDRLPVDEAIPALRAALANGTSAVLQAPPGA
                     GKTTHVPLALLDEPWLGDLKIVMLEPRRLAARAVTHRMAQLLGERAGDTVGYRVRRDT
                     RTGPKTRIEVVTEGILTRMLQSDATLEGVGLLIFDEFHERSIHADTALALALHSRSLV
                     RPDLRVLVMSATLDGARVATLLDDAPVIRSEGRIFPVELSYSARPDARGLAAAVASRV
                     VSALHDNDGDVLVFLPGGAEIRRVAALLDGRVSDEVRVERLYGDLSQQAQDAAIAPAP
                     GGTRKVVLSTPIAETSLTIEGVRVVIDSGLARAPRFSPRSGMTRLETVRISRSSADQR
                     AGRAGRTAPGRCYRMWPEHEQHHLLEHASPEILQADLASLVLELAVAGIRSVDELRWL
                     DAPPAPALEQGTQLLMMLGALDSFGAVTNHGRAMAALPVHPRIAHMLIKSAAIGAGAL
                     ACDVAAMLGERDFVRGLNGPPDADIGIRLELLHAPSTRAALHGAQVDTALLRRIAAES
                     TALRRQLRVADSPAPDSTSAGAVLALAYPDRIGQARGGAMDGRFLLRNGRGAGLTHPQ
                     GLSAAEYIVAAELDGDARSSRIFLGAPLTQSEIAAQFADQMEIEEVLEWDERTRSVRA
                     HLQTRLGAIVLSESLVANPETNGATELMLDVVRREGLQTLPWSGAAKTTRERVAFMRA
                     RHAGWPDLSDESLIAALGEWLAPILQGRTSMRDLSNDLDRALTAMLDWKQRADLDRLA
                     PLQYVAPTGTRVAIDYSNPEAPSISVRLQEMFAVKQTPAVDAGSVPLTLELLSPARRP
                     VQVTRDLEGFWRGSYIEVRKELRGRYPKHVWPEDPLSATPTTRAKRRGE"
     gene            complement(5198..6472)
                     /locus_tag="VLI40_13360"
     CDS             complement(5198..6472)
                     /locus_tag="VLI40_13360"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HSU98216.1"
                     /translation="MQPGSPSPARSWRAALVVACLAGTTVVCAILATEVRRANAALEA
                     MTAQTLGDYATSAGRILGTEAIRRSEAFRSRLYGPLMGTIVVDGAAPPLHTFAYRADS
                     LFAAEKYEPDSLRGYLRVDVRNRTWEGLRSMADSSRAAAVVAKALARARLDTARTPLL
                     ILPGAREPIIVSAAAVADADGRQYMYIVVQARATNFRHAMQATMQSVPLLPPSFAGSA
                     WNFDKSAAANHVSNDSLIGVRITAVDGTVLYVSPHSYNGPYRGQYHFQSGPDGFTIET
                     VLRPSLATALVPAVVRTTSRSLYIGLGLVACFLLAVSFIAFWGEMSHQTAERARSMQQ
                     LTTGLRHELNNALASVMLESQMLAASDDASPDARYAGAAIAEQADRMRKALRRLDNVE
                     RLPVVNYIEGKSMVDLTGAQAAEQEPETAHAG"
     gene            complement(6586..>7907)
                     /locus_tag="VLI40_13365"
     CDS             complement(6586..>7907)
                     /locus_tag="VLI40_13365"
                     /inference="COORDINATES: protein motif:HMM:NF017142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98217.1"
                     /translation="GKELRWDRENGSLWRIYPGAAHRVVAHYRVFGDDLSGTFSVLDT
                     LHANWNGASVFMYVEGRKPSAVTLHIDPPTGWHIINGDTRQLDQADYTFENYDRLIDT
                     PTEVAPSFMVDSFTVDNRLYRTVVHHNGPTTPEERARFVASVKRIVEAHNRVIAPPPL
                     KMYTFMFHIGFPGGDGMEHLYSTAIIDRKPWVDTASVLAGVETAAHEYFHVWNVKRIR
                     PMALGPFDYTHEQYQPSLWVAEGWTQYYGEMATSRAHLGSTADAYAMVAGIVQANLTA
                     PGRKEVSARMASFEAPFFDGAPRAQKTNASQTFFSYYSKGAGIALALDLMIRDQSNNV
                     RSLDDALRALKKLSWDQPNASYYLQGRGYTEADVEHAVSQAMGKDMHPWFERYVGGKD
                     DINFDDVLALAGLKLDRDATRWTITASPDASSRQVAIRDSWLADSQQ"
BASE COUNT         1469 a         2389 c         2548 g         1501 t
ORIGIN      
        1 ggacgatgga tcatctcgga gtacccagcc aggtgcgcag tcagatcacc gaagccgagt
       61 acatgtcggg acacatgatc tacgttcacg ttccgtcgct tgcgcagttc aaggcaaacg
      121 tctcggcgtt catcgacaag acgtcgggtc tctgagtgtg aattccccat cgtagattca
      181 tcattctcga gaaagcggga atgacgaatt cacaaaagcg gcacgcaccg tgaaggtgcg
      241 tgccgctttt tacgttacat catgtgggtg acaccgggaa tcagtggccc agctccgttg
      301 cggctcggtc tacgagtgcc gcctccgcgt tgagcgcggc ggaaacacgg ccgatttcgg
      361 ttgtcgccag cggccactcc ttctgctcga ttgcttcgcg cacgccgggg atcgtcttca
      421 cgccgtagcc agtatagtaa ccaggcgcgt acagcagatg cttgaaccaa ggccggttcg
      481 ggaggccggc atctgacagc agcaggcgct cgctctggag cagatcggtg ttgagcttga
      541 tgaagcttgc tgttgccgcg ccgtccatgg attgtgtgaa cgctgtctga tatcgctgcg
      601 cggcgcgcgt caacgctgcc gatgcgctgt cgagtggcgc gaagtcaaga tccggtatca
      661 ctgcttcgtc tttcggaagc gtgaacggat gccgcgggtc gttcgtcagg aagaatccgc
      721 tgtccgcgac ttcacgattg tgctcgacga cgtccgacgc catcgtcttg tgaagcgtct
      781 tgagctccgt cacataggtg ccgacggtct gggcaagatc ggtgaagtcg tacggaatga
      841 cgtccgcatc tgcgaggcgc atcaccgctg ttccagctgt ttgcgcgagc gccttgccgt
      901 acacgaagct ggtatcggag aagtgcgtgt accagtaaaa gtcgtcgtac actgaatggt
      961 acaccccgcc ctgatcctcg ccgccgaagc cgagattcat ggatgggaca cccacgtgct
     1021 gcaggaaggc ggtgtagtcg gagccggacc cgagcgcacc aatgtgcaga tcggcgcggt
     1081 tgcgaatgtc cttgcgtgtg gcagccgacg cgtgaagaag cgaacgcgcg cgcgagcggc
     1141 tctcgacgct cgagccggtt tccggatcag tgatgtcgcg catcacgcca ttgatgaact
     1201 tctccaatac gtgagagcca ctgacgccga gatagccgcg tccattcgtg tcgctgttga
     1261 gatatgcgac agcgtgcgcc gcgagctcag cagcgtgtgt ctccgcccat tcggtcgaac
     1321 ccagcaggcc gggctcttca ccgtcccacg ctgcgtagat gatcgtgcgc tttggatgcc
     1381 agccctgctt gacgagcgcg cccatcgcgc ggacttcctc gagtagtgcg atctgaccgg
     1441 cgatcggatc atccgcgccg ttgacccatg catcgtggtg gttcccgcga acgacccatt
     1501 catccggcga cgagctgccg cgcaactggc cgattacatc gtaaatcggc ttgatatccc
     1561 agttggactt cacaacaaga tgaacgcgcg ccggcccggg gccgatcttg tacgtgagtg
     1621 gaagtgcgcc gcgccaatca cgcggtgcga cgtcgccacc gatcgccgca agcaacggtt
     1681 ttgcatcgcc gtatgagatt ggcagaacgg ggatcttcgt gaaaactttg acgtccttga
     1741 gtgcgagacg cttcgcatct ttcgtagcac caacacccgg agtcagcggg tcgccgggat
     1801 aggtaggcat gtccatcacg ctaccgcgct gcacgccatc ggccggacgc atcggcccct
     1861 tcggatagac gtcaccttcg ttgtaaccgt cgtcaccagg atcggaatag atcagacagc
     1921 cgatcgcgcc atgctccgcg gcgactttcg gcttgatgcc tcgccacgac tggccatagc
     1981 gcgcaatgac gatcgcgccc ttgaccgata caccacgccg cgcgagctca tcgtaatctg
     2041 ccggaattcc gtaattgaca tatacgagcg ggcccgtcac gtcaccgtcg atcgaatatg
     2101 cgttgtaggt cggaagttgc tcggaagtct gtgacgatgt cgggtcgccc ggcaccggcg
     2161 gctcctggag cttggcggtg aagcgtgtcg gagcgacgag ctcgacgaga cgctgcttgg
     2221 gtgtcgggaa gagcacgttg aacgtctcga tgtgtgcatc ccatccggcg tccttgaatt
     2281 gcttgagaat ccactccgcg ttctgccggt cgtaaggtga accgacatgg tggggacgcg
     2341 cagacagcag cttcatgtcg gcgcgcatgc gtgcgggatc cggtagcgcg cgaaatttat
     2401 tctcccagtc acgctgaacg cgcgacgacg ctggagtgaa tccgaggatg tcgccggacg
     2461 gaggcggaga cgccgcgacc agtgggacgg cgagcacgcc gagcgacgcg aggatcggga
     2521 gactgaagaa tcgcatgtac ccctcacagc aatggttgac gactgacacg agctaccccg
     2581 ccgaatatac ggttcaccga tcgccggcgt ggagtggggc gttattaact tcaaccgtga
     2641 atgatccgac ccgtcgatac cactggcgaa aggttaccgg gcgaccggct tcctgtggac
     2701 gaagccatcc ctgccctgcg cgcggcgctc gcaaacggga ccagcgcagt acttcaggcc
     2761 cctccgggtg ccggaaagac gacgcacgtc cctctcgcgt tgctcgacga gccgtggctt
     2821 ggcgacctga agatcgtcat gctggagccg cgccggctgg ctgcgcgagc ggtcacgcat
     2881 cgtatggcgc agctgcttgg cgagcgcgcc ggcgacactg tgggatacag agtgcggcgc
     2941 gacacccgga caggaccgaa aacgagaatc gaagttgtga ccgaggggat tctcacacga
     3001 atgctgcaga gcgacgcgac gctggaaggc gttgggcttc tcatcttcga cgagtttcac
     3061 gagcgcagca ttcacgccga cactgcactc gcgctcgcgc tgcactcgcg atcgctggtt
     3121 cgacccgatc tcagagtact tgtaatgtcg gcgacgctgg atggcgcgag ggtggcgacg
     3181 cttctggatg atgcacctgt catcagaagc gaagggcgca tctttcccgt cgagctgtcg
     3241 tattcggcgc ggccggatgc gcgcggactg gctgccgctg tcgcatccag agtcgtgagc
     3301 gcgctgcatg ataacgacgg tgacgtcctg gtgtttctcc ccggtggcgc ggagatacgc
     3361 cgcgtcgccg cgctactcga tgggcgcgtg tcagatgaag tgcgcgtgga gcgtctgtac
     3421 ggcgacctgt cgcaacaggc acaggatgcg gcgatcgcgc ccgcaccggg cggcacacgc
     3481 aaggtcgtac tctcgacgcc aattgcggaa acgagcctta cgatcgaagg cgttcgagtc
     3541 gtgatcgaca gcgggctcgc gcgcgcgccg cgattttcgc cgcggagcgg aatgacgcgg
     3601 ctcgaaacgg tccgtatatc acgctcgtcc gcggaccagc gcgctggacg ggcaggacgg
     3661 acggctccgg gccggtgcta tcgaatgtgg cccgagcatg agcagcatca tcttctggag
     3721 cacgcgagtc ccgagattct tcaggcggat ctcgcctcgc ttgtgctcga gcttgcggtt
     3781 gccggaatac ggagcgtcga cgagcttcgc tggctcgacg ctccgccagc gccggcgctg
     3841 gagcaaggaa cgcaattact gatgatgctg ggcgcgctcg actcattcgg tgcggtcacg
     3901 aatcatgggc gcgcgatggc ggccttaccg gttcatccgc gcatcgcgca catgcttata
     3961 aagtcagccg cgatcggtgc cggtgcgctg gcatgtgacg ttgcggcaat gctcggcgag
     4021 cgcgacttcg tgcgtggtct caacggacca cccgacgcgg atatcgggat tcgcctggag
     4081 ttgctgcatg cgccgtcaac tcgtgccgcg ttgcatggtg cgcaggtcga cacggcactt
     4141 ctccggcgga tagcggccga aagtacggcg ctgaggcgtc agctacgtgt ggccgattca
     4201 ccggcgcccg actcgacaag tgcaggcgcg gtgcttgcgc tggcatatcc cgatcgtatc
     4261 ggccaggcac gcggaggcgc catggatgga cgctttctgc ttcgcaatgg tcgcggcgcg
     4321 gggctcacac atccgcaggg actctcggcc gccgagtaca tagtcgccgc cgagctcgac
     4381 ggcgatgcgc gatcgtcgcg aatatttctc ggcgcaccgt tgacgcagtc cgagatcgct
     4441 gcacagttcg cagatcagat ggagatcgag gaagttctgg aatgggatga gcgaacgcga
     4501 agtgttcgtg cgcatctgca aacgcggctt ggtgcgatcg tactgagcga atcactcgtt
     4561 gccaatccgg agaccaatgg cgcgacggag ttgatgctgg atgtggtccg ccgcgaaggg
     4621 ctccagacgc ttccatggag tggcgccgcg aagacaacgc gcgagcgtgt cgcgttcatg
     4681 cgagcgcgac acgcgggttg gcctgacctg tctgacgagt cactgatcgc cgcactcggg
     4741 gaatggctcg caccaatact gcaggggcgc acctctatgc gcgacctgag caacgatctg
     4801 gatcgcgctc tgacggcgat gctggactgg aaacagcggg cagatctgga ccggctcgca
     4861 ccacttcagt acgtcgcgcc aaccggtacg cgcgtcgcga tagactacag caatccagag
     4921 gcgccgagca tttcagtgag gctgcaggag atgttcgctg tgaagcagac gccagccgtc
     4981 gatgcaggga gcgtcccgct tacgctggag ctgctgtcgc cggcgcgtcg acctgtgcag
     5041 gttacgcgcg acctcgaagg tttctggcgt gggagctaca tcgaagttcg gaaggagctg
     5101 cgcggacggt atccaaagca tgtctggccg gaagatccgc tatcagcgac cccgacgaca
     5161 agggcgaaac ggcgcgggga gtgatgatgc ccgggcttca gccggcgtgc gctgtttccg
     5221 gctcctgctc cgcggcctgc gcgcctgtga gatccaccat cgacttgcct tcgatatagt
     5281 tgaccactgg caggcgttcg acattgtcca gccggcgcag agccttgcgc atccggtctg
     5341 cctgctcggc gattgcggcg cccgcgtagc gggcgtccgg agacgcgtcg tccgacgctg
     5401 ccagcatctg ggattcgagc atgacgctcg cgagcgcgtt gttcagctca tgcctgagcc
     5461 cggtagttag ttgctgcatc gaccgggcgc gctcggcggt ctgatgcgac atttcccccc
     5521 agaatgcgat gaacgaaaca gccaggagga agcaggctac cagtccgagg ccaatgtaaa
     5581 gcgaacgtga ggtggtgcgg acgaccgctg gcaccagcgc cgtggcaaga ctggggcgca
     5641 gaacggtttc gatcgtgaag ccatccggtc cgctctggaa gtgatactgg ccgcggtagg
     5701 gtccgttgta ggaatgaggt gacacataca gcaccgttcc gtcgacggcc gtgatgcgca
     5761 ccccgatgag agaatcgttc gagacgtgat tggcagcggc ggacttgtcg aagttccacg
     5821 cagacccggc aaatgacggc ggcagaagtg gcacggactg catcgtcgcc tgcatcgcat
     5881 ggcgaaaatt cgtcgcccgc gcctggacaa cgatatacat gtactggcgc ccgtccgcgt
     5941 cagcgaccgc tgcggcggag actattatcg gctctcgcgc gccgggtagt atgaggagtg
     6001 gtgttcgcgc cgtgtccaac cttgctctcg cgagtgcctt ggccacgacc gcagcggcgc
     6061 ggctggaatc ggccatcgag cgcaggccct cccatgtacg gtttcgcacg tcgacgcgca
     6121 gatagccgcg tagcgaatcc ggctcgtatt tctcggcggc gaagagcgag tcggcgcggt
     6181 acgcgaatgt atgcaacggt ggtgcggctc catccacgac gatggtgccc atcaacggac
     6241 cgtagagtct cgatctgaat gcctcggatc gccggatcgc ttcggtgcca aggatcctgc
     6301 ccgccgaagt tgcgtagtcc ccgagcgtct gcgccgtcat cgcctcgagg gcggcgttag
     6361 cccgacgtac ttccgttgcc aggattgcgc acaccaccgt cgtgccggca aggcaggcta
     6421 cgaccagtgc agcacgccac gaccgtgcag gtgatgggga cccaggttgc attaaacttc
     6481 gttgaggttg acaaatgacg atcgtccgcc gtcagtgtca cgccgacata tcaaggatcg
     6541 gcacgagaat ctcaacccca acctcggagc cgctttttcg cggccctatt gctgcgagtc
     6601 tgccagccac gaatcgcgta tggcgacctg tctggacgac gcgtccggac tcgcggttat
     6661 cgtccagcgg gttgcgtcac ggtccagctt caatccggcg agcgccagga cgtcgtcgaa
     6721 gttgatgtcg tcctttccac ccacgtagcg ctcgaaccac ggatgcatgt ccttgcccat
     6781 cgcctgcgag accgcatgct ccacgtcggc ttcggtgtag ccgcgaccct gcaggtagta
     6841 ggacgcgttt ggctgatccc aagagagctt cttgagggca cgtagtgcat catccagcga
     6901 gcgaacgttg ttgctctgat cgcgaatcat gagatccagc gcgagcgcga tgccggcgcc
     6961 cttggagtaa tagctgaaga acgtctgcga ggcgttcgtc ttctgcgccc gcggggcgcc
     7021 atcgaagaac ggcgcctcga acgaggccat gcgcgcggag acctccttgc ggccaggcgc
     7081 ggtcaggttt gcctgcacga tgcccgcgac catcgcgtat gcatctgcgg tcgacccgag
     7141 atgcgcgcgc gacgttgcca tttcgccgta gtactgcgtc caaccctcgg cgacccacag
     7201 actcggctga tactgctcat gcgtatagtc gaacggcccg agcgccatcg gacgtatccg
     7261 cttgacgttc cacacgtgga agtactcgtg agcggccgtc tccacaccgg ccagtaccga
     7321 agcggtatcc acccacggct tgcgatcgat tatcgccgtg gagtagaggt gctccatacc
     7381 gtctccgcca gggaagccga tgtgaaacat gaacgtgtac atcttgagcg gtggcggcgc
     7441 gatcacgcga ttgtgcgctt ccacgatcct cttgaccgat gccacgaatc gcgcgcgctc
     7501 ttccggggtg gttggcccgt tgtggtgcac gaccgtacgg tacaaccgat tgtcgactgt
     7561 gaacgaatcg accatgaagg atggtgcgac ttcggtcgga gtatcgatca ggcgatcgta
     7621 gttctcgaag gtgtagtcgg cctggtccag ctggcgcgtg tcgccattga tgatgtgcca
     7681 gccggttggc ggatcgatat gcaaagtgac ggcggacggc ttgcggccct cgacgtacat
     7741 gaataccgat gcgccgttcc agttcgcgtg cagcgtatcg agtacgctga aggtaccgga
     7801 cagatcatca ccgaaaactc gatagtgggc gactacgcga tgcgcggcgc cgggatagat
     7861 gcgccagagc gatccatttt cgcgatccca cctgagctcc ttgccgt
//
LOCUS       DATIMD010000599         3572 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5167117, whole genome shotgun sequence.
ACCESSION   DATIMD010000599 DATIMD010000000
VERSION     DATIMD010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3572
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5167117"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..206
                     /locus_tag="VLI40_13370"
     CDS             <1..206
                     /locus_tag="VLI40_13370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98218.1"
                     /translation="DANILVDFRGGEARTRSRRGRIGALRRLLRGLTGRFGLVATLAS
                     TLEPKAPQQVVRGIPLWHARSTD"
     gene            complement(240..761)
                     /locus_tag="VLI40_13375"
     CDS             complement(240..761)
                     /locus_tag="VLI40_13375"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HSU98219.1"
                     /translation="MATTRASATAPSTQPTQVTRDQLIQGLQDDIAREYKAIIQYIIF
                     SQKLDTARFMSIADQLAKHAHQELDHALAIARQLDYFGEYPVHEPKPVDVSQDNEGML
                     RLDLEAEDDTIRNYRERIRQADALGEYALGEVLRGIVEQEQDHQIDLATALGVVPNDQ
                     QRKSPSAKQKSSK"
     gene            908..1264
                     /locus_tag="VLI40_13380"
     CDS             908..1264
                     /locus_tag="VLI40_13380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010512344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 family protein"
                     /protein_id="HSU98220.1"
                     /translation="MVVTKRAYDPAVDTDGYRVLVDRLWPRGVSKATAHIDAWEKDIA
                     PSNELRKWYEHDPAKWGEFQKRYRHELEAPAATAVLDDLVRRAKRGRVTLVYASHAGD
                     ISNAAVLAAMINRRAS"
     gene            complement(1245..1466)
                     /locus_tag="VLI40_13385"
     CDS             complement(1245..1466)
                     /locus_tag="VLI40_13385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010512346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2945 domain-containing protein"
                     /protein_id="HSU98221.1"
                     /translation="MASDHPFKRGDHVSWNSEAGRVHGHITRVVTSNIQFKGYTVHAT
                     KDDPQYEIRSDTTDHVAMHRGAALRKLSD"
     gene            1667..2326
                     /locus_tag="VLI40_13390"
     CDS             1667..2326
                     /locus_tag="VLI40_13390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98222.1"
                     /translation="MTKTGSLAPFDGDVAEERFSELFDRYKQHLAWVGVVIILAGVGV
                     WFYLRSESIKSQRAEAAYEAAVQSVSSGNLPLAQSDLKKAATRYAGTNGGAESSMALA
                     KIYYQQGKYQDGIAALAGPAADKGDMQYEARLLVASGYEGLNKWPEAAKEYEAAADVA
                     RFDADKSSARAMAARAYQAAGNKAAATKIWTDLLANPKSTFATEAKIRLGELEAAPIK
                     T"
     gene            complement(2842..>3572)
                     /gene="dapF"
                     /locus_tag="VLI40_13395"
     CDS             complement(2842..>3572)
                     /gene="dapF"
                     /locus_tag="VLI40_13395"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HSU98223.1"
                     /translation="PDLIQRICARGTGVGADGLVILTAPRSQGADLALTYFNADGTLA
                     DLCGNATLCTSSLAARLGAVDPSGFALETGTGVLRARIRDGMPEFDLPDIRQAEADVA
                     AIEREPGEDRLGFAVAGIPHVVIRVPDVALCDLMRRGRYVRSHESLEAGANVNFVSRD
                     QAGWHMRTFERGVEGETLACGTGSVATAILLRLWGEGGDDVELETASGRRLGIRSVQA
                     SDGTWKASLRGEGRLVFEGQLGDL"
BASE COUNT          665 a         1089 c         1131 g          687 t
ORIGIN      
        1 gtgacgcgaa cattctcgtg gatttccgcg gcggagaggc gcgtacccgt agccggcgtg
       61 gtcgtatcgg agctctgaga cggttgctgc gcgggctgac cggccggttc ggactcgtgg
      121 cgacgctcgc gtctacgctc gagcccaaag cgcctcaaca ggtcgtccgt ggtattccgc
      181 tttggcatgc ccgatcgacc gattgaggtg gcattcgtct gagcaagatc tcgttcgcgc
      241 tatttactgc ttttctgctt cgcggacggt gattttcgtt gctgatcgtt ggggacgacg
      301 ccaagcgccg tagcaagatc tatctgatga tcctgctcct gctccacgat gccgcgcagg
      361 acctcgccaa gggcatattc gccgagtgca tcggcctgcc ggattcgctc ccggtagttg
      421 cggatcgtat cgtcttcggc ctcgagatcc agccgcagca ttccctcgtt gtcctgcgat
      481 acgtcgaccg gcttgggctc gtgcaccgga tactcgccga aataatccag ctgtcgcgcg
      541 atcgccagcg catggtcgag ctcctgatgc gcgtgcttgg cgagctggtc ggcgatgctc
      601 atgaatcgcg cggtatcgag tttctggctg aagatgatat actggatgat cgccttgtac
      661 tcgcgggcga tgtcgtcctg cagcccctgg atcagttgat ctctggtaac ctgcgtcggc
      721 tgcgtgctgg gcgcagttgc gcttgcccgt gtcgtggcca tgtcggaatt gcgttgaagt
      781 gaaatggagt gagtcacgcg agtgacttgc gttatcctca agttgtgaag caggaatctt
      841 gccgaaggcc agcgcggacc cggcagggaa cagtgactgc gcgatactcg tgtgctggag
      901 agcagtgatg gtagttacca agcgcgcata cgacccggct gtcgacacgg acggttatcg
      961 ggtactggtc gaccggctct ggccgcgagg cgtgtccaag gcgacggcgc acatcgatgc
     1021 gtgggagaag gacatcgcac cgtcgaacga gctgcggaag tggtacgagc acgacccggc
     1081 gaaatggggc gaattccaga agcgctatcg ccacgagctc gaggcgccgg ccgccaccgc
     1141 ggtcctggac gatctcgtcc gccgcgccaa acgcgggcgc gtcacccttg tttatgcatc
     1201 ccacgcggga gacatcagca acgccgcggt actcgccgcg atgatcaatc ggagagcttc
     1261 ctgagcgccg ctccccggtg catggcgacg tgatccgtgg tgtcgctcct gatttcatac
     1321 tggggatcgt ccttggtggc gtgaacggtg taccccttga actggatgtt cgaggttacc
     1381 acgcgcgtga tgtgaccgtg aactctgcca gcttcggagt tccagcttac gtggtcgccg
     1441 cgcttgaatg gatggtcgga tgccatggcg tgatctcgtt gttgtcggaa aaaccagggg
     1501 ccgcaatccg agtgccgtcc gctatcggcc gccggtcgtc aacggctata tttgacgtgc
     1561 tccgaaccac ggcagatgtt cacggacgac cgcaagcacc gatggggcgc cgggtccggc
     1621 tggggcgggg ctgtacgcag ttcataatat gtaaacctat caaatcatga caaaaactgg
     1681 gtcgctggca ccatttgacg gagacgtcgc cgaggagcgc ttttcggagc ttttcgaccg
     1741 ctacaagcag cacctcgcgt gggtcggcgt ggtgatcatc ctcgctggtg tgggcgtctg
     1801 gttctacctg cggtcggagt ccatcaagtc gcagcgggcg gaggcggcgt acgaggccgc
     1861 ggtccagagc gtgtcgtccg gcaacctacc gctggcgcag tcggatctca aaaaggcagc
     1921 gacgcgctat gcggggacga acggcggcgc cgagagctcg atggcgttgg ccaagatcta
     1981 ctaccagcag ggcaagtatc aggatgggat cgcggcgctg gcaggccccg cggcggacaa
     2041 gggcgatatg cagtacgaag ctcggctcct ggtcgcgtcc ggatacgaag gactgaacaa
     2101 gtggcccgaa gccgccaagg agtacgaggc cgcggcggac gtggcgcggt tcgacgctga
     2161 caagagcagc gcgcgagcga tggccgcgcg cgcctaccag gctgccggaa acaaggcagc
     2221 ggcgacgaag atctggacag accttctggc gaatcccaag agcacgttcg cgactgaagc
     2281 gaagatccgg ctcggcgaac tcgaagcagc gcctatcaaa acctgatctg acttcataaa
     2341 gtggatgaga gggccgcccg tttcgggcgg ccttttcgtt agggggacaa gcgacgttcc
     2401 gacgccaggc aggcgccgaa ttggtggaat gcgtttccga cgacgctatt ggacgcgtcc
     2461 gattggtggc cccgcgtttc cgaccacatt attcgacgcg ccggatcggt ggtcccgcgt
     2521 agggcgcgga ttcatccgcg cctggccctc atggatgcaa tcgaacatgg atgaacatgg
     2581 atgttcccgg attcgtccgc gcccgaccca ttcacgcgcg atcggaattg gatgaacgcc
     2641 ggattggttg aatgtcgtca tcccgacgaa gggcggttcg ccgatcgata acacgcggcc
     2701 gatgattaac aggacagagc tgtcgtcgag cactcgttcg acatctatca cgatcgagcc
     2761 agcagcgcgc ctccatcccg atttgatatg cgtataatat ggattatgta aactaaaaaa
     2821 tgtgggaaat gtgggaaacc cctacaaatc ccccagctgc ccctcgaata ccagtcggcc
     2881 ttcgccccgc aacgaggcct tccacgtccc gtcggaggcc tgtacagacc gaatgccgag
     2941 ccgccggccg gacgccgttt cgagctccac gtcgtcgccg ccttcgcccc aaagcctcag
     3001 cagaatcgcc gtcgcgacgc tccccgtgcc gcacgccagc gtctcgccct ccacgccacg
     3061 ctcgaatgtt cgcatgtgcc acccggcctg gtctcggctg acgaaattca cgttcgcacc
     3121 agcctcgagc gactcgtggc tccggacgta tctgccacgt cgcatcagat cgcacagcgc
     3181 tacgtccggc acccggatca ccacgtgcgg aatgccagca acggcaaaac cgagccgatc
     3241 ctccccgggc tcgcgctcaa tggccgccac atcagcctct gcctgacgta tgtctggaag
     3301 gtcgaattcc ggcattccgt cccggattcg cgcccgtaga acccccgtac cggtctccag
     3361 cgcgaatccg gacgggtcca ctgcccccaa tctggctgcg agactcgagg tacagagcgt
     3421 ggcgttgcca cagaggtccg caagcgttcc gtctgcgttg aaataggtca gtgcgagatc
     3481 ggcgccttgg ctcctgggcg ctgtaaggat cacgaggccg tcggctccga cgccggttcc
     3541 acgggcgcag atgcgctgaa tcagatccgg ct
//
LOCUS       DATIMD010000600         3704 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4583451, whole genome shotgun sequence.
ACCESSION   DATIMD010000600 DATIMD010000000
VERSION     DATIMD010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3704
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4583451"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1305
                     /locus_tag="VLI40_13400"
     CDS             <1..1305
                     /locus_tag="VLI40_13400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HSU98224.1"
                     /translation="PTIERAVRRIQAELAERLQELRNTNKLLEAQRLESRTNFDIEMM
                     LEIGTCAGIENYSRHLSGREIGERPACLFDYFPDDFLVVVDESHVTLPQIGGMFNGDR
                     ARKLTLVDYGFRLPSALDNRPLTFDEFLSLTPRAINVSATPGDIELRLCEGVVVEQII
                     RPTGLVDPEIEVRPVRGQVDDLLKEIRLRERKNERVLVTTLTKRMSEDLTDYLQQMGV
                     RVRYMHSDIDAIERMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFL
                     RSDRSLIQTTGRAARHLNGRAIFYADRITGSMKRCMDETARRRATQLAYNTEHGITPR
                     SVVKSTDQVRFITRVADARSERQDRQAEQSRRVAESSPEYSRIADIDTLIKTLEDDMK
                     VAAKDLDFESAARIRDQLFELRAQRDNKSKRTSPSLAALRNE"
     gene            1302..1760
                     /gene="tsaE"
                     /locus_tag="VLI40_13405"
     CDS             1302..1760
                     /gene="tsaE"
                     /locus_tag="VLI40_13405"
                     /inference="COORDINATES: protein motif:HMM:TIGR00150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HSU98225.1"
                     /translation="MMDAHHHTTPPLATRGHLVMSEQELIAWGERLGADSHPHLLIAL
                     TGELGAGKTTLAQAICRGYGVTEPVTSPTYAIVHEYASQHSPVYHIDLYRIERPEELE
                     QLGWSDIVTANALVIVEWPEHAGGLLPDGHLPIVLDYDPERADRRLLLAG"
     gene            1760..2428
                     /gene="tsaB"
                     /locus_tag="VLI40_13410"
     CDS             1760..2428
                     /gene="tsaB"
                     /locus_tag="VLI40_13410"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HSU98226.1"
                     /translation="MRGNTLLLETSTEVGSVAIARNGEIVADLSFASRDPATGVRTEA
                     LAPAVVQCLGRAAVPVRDIAAIVCGAGPGGFTSLRSAAAFAKGLCSAVNIPLYAVSSL
                     ELLAWSAPIPDGKFIAALQAGRNEWFGQDVERDGERTELVGAAYIIGDDELRAREERM
                     HARLIGPGLEFDVRPLARAAVPWLHEIEARGPVDIDSWEPTYGRLAEAQVKWEAAHGR
                     PLTT"
     gene            2425..2976
                     /gene="rimI"
                     /locus_tag="VLI40_13415"
     CDS             2425..2976
                     /gene="rimI"
                     /locus_tag="VLI40_13415"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: protein motif:HMM:TIGR01575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HSU98227.1"
                     /translation="MTATVRPAQRSDLGAVVAIERASFGDPWTRGMFGTHLTSDGNNF
                     LVADEAGSVVGYAIAVVVSEESELLNIAVDPDHRGHGLGALLLDAAMDLCRGSGATEM
                     WLEVRASNAGARMLYDSRGFAEMGVRKRYYHAPREDAIVLRSDLRSAVRNKTVTEAVT
                     GFPPEARDGILSSASHFPRQENQ"
     gene            2973..3482
                     /gene="ssb"
                     /locus_tag="VLI40_13420"
     CDS             2973..3482
                     /gene="ssb"
                     /locus_tag="VLI40_13420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HSU98228.1"
                     /translation="MSRSLNKAMLIGNVGQDPEIRSTTNGGRVATFSLATSRTWNGPS
                     GDRQEKTEWHRCVVWNAGRGQGAEKGMGLADVVEKYVKKGDKLYVEGPIEYRQWQDKE
                     NQTRYTTEIRVRELVMLSSRGGGDFDGEAPPSRSARPAAVKSGAGQSGGEFEDFPAAL
                     QDEDDDLPF"
     gene            complement(3525..>3704)
                     /locus_tag="VLI40_13425"
     CDS             complement(3525..>3704)
                     /locus_tag="VLI40_13425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98229.1"
                     /translation="SRDTNLLHQSNHPRSEVQIIETAAVVVSPEILSQKNDGGNPTWI
                     CRRRSRSHNIATTWT"
BASE COUNT          711 a         1072 c         1239 g          682 t
ORIGIN      
        1 ccgaccatcg agcgtgcggt gcggcgcatt caggccgagc tggcggagcg tttgcaggaa
       61 ctgcgcaaca cgaacaagct gctggaggca cagcggctcg aatcgcgcac caacttcgac
      121 atcgagatga tgctcgagat cggcacgtgc gccggtatcg agaactattc acggcatctt
      181 tcgggacgcg agatcggcga acgtcccgct tgtctgttcg actacttccc ggatgacttc
      241 ctcgttgtgg tcgatgagtc gcatgtcact ctgccgcaga tcggcggcat gttcaacggc
      301 gatcgtgcac gcaagctcac gctcgtcgat tatggcttcc ggctgccgag tgcgctggac
      361 aacaggccgc tgacgttcga cgaattcctg tcgctcacgc cgcgcgcgat caacgtctcg
      421 gccacgccgg gcgacatcga gctgcgactg tgcgagggcg tggtggtgga gcagatcatc
      481 cggccaacgg gcctcgtcga tcctgagatc gaggtgcgtc cggtgcgagg ccaggtggac
      541 gatctgctca aggagatccg gctgcgcgag cgcaagaacg agcgcgtgct cgttaccacg
      601 ctcaccaagc gcatgtcgga agacctcacg gactacctgc agcagatggg tgttcgtgtg
      661 cgctacatgc actccgacat cgacgcgatc gagcgcatgg agatcgtgcg cggattgcga
      721 ctgggcgagt tcgacgtgct ggttggaatc aacctgttgc gcgaaggact ggacatgccc
      781 gaggtgtcgc tggtagcgat cctcgacgcg gatcaggagg gctttctgcg cagcgaccga
      841 tcgctcatcc agacgacggg gcgcgcggcg cggcatctca acggtcgtgc gatattctac
      901 gccgatcgca tcaccggatc gatgaagcgc tgcatggacg agacggcgcg tcgtcgtgcg
      961 acacagctcg cttacaacac ggagcatggc atcacgccgc ggagcgtcgt caagagcacc
     1021 gatcaggtac gcttcatcac gcgtgtggca gatgcgcgct ccgagcggca ggaccgtcag
     1081 gccgagcagt cgcgcagagt cgcggaatcg tcgccggaat attcaaggat cgcggatatc
     1141 gacacgctga tcaagacgct ggaagacgac atgaaagttg cggcgaagga tctggatttc
     1201 gagagcgcgg cacgcattcg agaccagctt ttcgagttgc gggcgcagcg cgataacaaa
     1261 tccaagcgta cgtccccttc actggccgcg ctccggaacg aatgatggac gcgcatcatc
     1321 acacgacgcc gccactcgca acgcgtggcc atctcgtcat gagcgagcag gaactgatcg
     1381 cgtggggcga gcgattgggc gcggattcac atccacacct cctaattgcg ctcaccggcg
     1441 agctgggtgc gggcaagact acgcttgcgc aggctatctg tcgcggctac ggcgtcacgg
     1501 aacccgtcac gagcccgacc tacgcgatcg tacacgagta tgcgtcgcag cactcgccgg
     1561 tctaccacat cgatctctac cgcatcgagc gtcccgagga gctggagcag ctcgggtgga
     1621 gtgacatagt cacagccaat gcgctcgtga tcgtcgaatg gcccgagcat gcgggtgggc
     1681 tgcttcccga cggacatctt ccgatcgttc tcgattatga tccggagcgc gccgaccgtc
     1741 gtctgttgct ggcgggctga tgcgcggcaa cactctgctg ctcgagacat cgaccgaggt
     1801 cggatctgtt gcaattgcgc gcaacggtga gatcgtggcc gatctttcgt tcgcatcgcg
     1861 cgatccggca actggtgtgc gcacggaagc gctggcgccc gcggttgtgc agtgcctcgg
     1921 acgcgccgcg gtaccggtac gcgatatcgc tgccatcgtg tgtggcgccg gaccgggcgg
     1981 cttcacaagc cttcggtcag cggccgcgtt cgccaaggga ctctgctccg cggtcaacat
     2041 tccactgtac gcggtgtcgt cgctcgaatt actcgcatgg agcgctccga taccggatgg
     2101 gaagttcata gcggcgctgc aggccggacg caacgagtgg ttcggccagg acgtcgagcg
     2161 ggacggcgag cgcacagagc tcgtcggcgc ggcgtatatc atcggtgacg atgagctgcg
     2221 cgcgcgagag gagcgcatgc acgcgcgatt gatcgggccc ggactggagt tcgatgtcag
     2281 accgctcgcg cgtgccgccg tcccctggtt gcacgagatc gaagcgcgcg gaccggtcga
     2341 catcgactca tgggagccga cttatgggcg gctcgcggag gcgcaggtga aatgggaggc
     2401 ggcgcacggg cgtccgctga cgacatgaca gcgacggtac gccctgctca gcgctcagac
     2461 ctcggcgcag tcgtcgccat cgagcgcgca tcgtttggcg atccctggac gcgcgggatg
     2521 tttggcacgc atctgacgtc tgacggcaat aattttctgg ttgcggacga agcgggaagt
     2581 gtggttggct acgccatcgc cgtggtagtt tcggaagaat ccgagctgct caatatcgcg
     2641 gttgatcccg accatcgggg tcatggcctc ggcgcgctgt tgctggacgc ggcgatggac
     2701 ctttgccgcg ggagcggtgc gacggagatg tggctggaag tgcgtgcatc caatgcagga
     2761 gcgcgcatgt tgtacgacag tcgcggattc gccgaaatgg gggttcgcaa gcgatattac
     2821 cacgcaccgc gagaagacgc gatcgtactg cggtcggacc ttcgctcggc ggtgcgcaat
     2881 aaaacggtaa cagaagcggt gaccggcttt cccccggaag cccgagatgg catactttca
     2941 tcggcgagcc actttcctcg ccaggagaac caatgagtcg aagcctcaat aaagcgatgt
     3001 tgatcggaaa tgtcgggcag gacccggaaa ttcgttcgac caccaacggc ggccgcgtag
     3061 cgacgttctc gcttgcgacg tcacgcacct ggaacggccc gtcgggcgac cgtcaggaaa
     3121 agacggagtg gcaccgttgt gtcgtctgga acgcaggacg cggccagggc gcagagaagg
     3181 gaatgggact cgccgacgtc gtcgagaagt acgtcaagaa gggcgacaag ctgtacgtcg
     3241 agggaccaat cgaataccgc cagtggcagg acaaggaaaa ccagacacgc tacaccaccg
     3301 agatccgcgt tcgtgagcta gtgatgctga gctcacgtgg cggcggcgac ttcgacggcg
     3361 aggcgcctcc atcacggtct gcgcgtcccg ctgcggtgaa gagtggtgcg ggccagagcg
     3421 gtggggaatt cgaggatttc ccggcggcgt tgcaggatga ggacgacgat ctgccgttct
     3481 aactttctgg ttagcacgat gtcggtttct ggtattggtg ttgatcatgt ccaggtagtt
     3541 gcgatgttgt gagatcggga gcgacggcgg caaatccagg tcggattgcc gccgtcgttt
     3601 ttttgtgata gtatctcagg cgaaacgacc acagctgcag tttcgataat ctgaacctcg
     3661 gaccgtggat ggttgctttg atgcagcagg ttcgtgtcgc ggct
//
LOCUS       DATIMD010000601         4994 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_833476, whole genome shotgun sequence.
ACCESSION   DATIMD010000601 DATIMD010000000
VERSION     DATIMD010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4994
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_833476"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..192)
                     /locus_tag="VLI40_13430"
     CDS             complement(<1..192)
                     /locus_tag="VLI40_13430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol phosphate phosphatase"
                     /protein_id="HSU98230.1"
                     /translation="MSESYLDAVTELARIAGDFAMSQYGRTLTVDVKHDGSPVTLADR
                     GAEERARAWIEKRFPEDGIL"
     gene            complement(189..953)
                     /gene="hisF"
                     /locus_tag="VLI40_13435"
     CDS             complement(189..953)
                     /gene="hisF"
                     /locus_tag="VLI40_13435"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HSU98231.1"
                     /translation="MTLTRRLIVCLDVRGGRVVKGTRFVNLRDVGDPVELAARYEAEG
                     ADEIVFLDIAASIEERGTLLDVARRTAERLFIPLTIGGGVRSAADVAQVLRAGADKVA
                     INSAAVRNPQVLTEAAAMFGAQCVVSSIDAKMTDGTWRVYTHGGRTATERDAVEWARE
                     CERLGAGEILLTSVDRDGSRDGYDIELTRAVADAVNVPVIASGGAGSARDVVDVIQSG
                     HADAALVAGILHDGVATVSELKTHMKGSLLPVRNAA"
     gene            complement(950..1501)
                     /locus_tag="VLI40_13440"
     CDS             complement(950..1501)
                     /locus_tag="VLI40_13440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase"
                     /protein_id="HSU98232.1"
                     /translation="MNERTVVERRTRETQIRLEVQRGEGKGDIATGVPFLDHMMVTFA
                     RYSGLDVTLRATGDMRHHTIEDVAIAMGSAVADIISASAARYGDCTIPMDEALVQACV
                     DMGGRPYYRGPVPSSLYDHWMRSFADNAKATIHIRVLRGIDRHHIVEAAFKALGLAVR
                     KAMIDTGAGAVFSTKGSVSLDVK"
     gene            complement(1498..2211)
                     /locus_tag="VLI40_13445"
     CDS             complement(1498..2211)
                     /locus_tag="VLI40_13445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]
                     imidazole-4-carboxamide isomerase"
                     /protein_id="HSU98233.1"
                     /translation="MIAIPAIDIREGACVQLVGGSYDAEQVRLDDPPGVAHRWEFAGF
                     HRLHIVDLDAATGRGSNADVIREVLRATSMGAQVGGGVRDEERIESLLRDGANRVVLG
                     TKAVESANWLGDMAEAFPGMLIVAADVRDRHVVTRGWTRTSDRYILDFIEELNALPLA
                     GVMVTAVHKEGLMEGTDLSLMEDVVEESEHPVCASGGIGTIGDLRALEDRGVASVVIG
                     MALYTGAIDPGMVAEEFAE"
     gene            complement(2208..2852)
                     /gene="hisH"
                     /locus_tag="VLI40_13450"
     CDS             complement(2208..2852)
                     /gene="hisH"
                     /locus_tag="VLI40_13450"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HSU98234.1"
                     /translation="MASAGTVRRRVAGVRRMNGRTIITVFDYGAGNMHSLVKALDVGA
                     GVEVRLQTDPSAALKTDALVLPGVGAFSNAASRLADGASEMRDAILDGLPTLCICLGM
                     QLLFDGSEEGSGTGLGVIPGHVRRLRARRIPQIGWNEVESLDEALPEVAYFANSYVCE
                     PDDDACITAYTTHERDRFASVVTVANAVGVQFHPEKSSRAGVSFVHDFVNGVIG"
     gene            complement(2801..3898)
                     /gene="hisC"
                     /locus_tag="VLI40_13455"
     CDS             complement(2801..3898)
                     /gene="hisC"
                     /locus_tag="VLI40_13455"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HSU98235.1"
                     /translation="MTRLSARDADGLDAVSPRESGTVARETYRSISLYAPNRAPAAID
                     LSDNTNLWGVPPAALRAITDAASGTITRYPALYAADVKQAIADYVGLSPDMVVTGCGS
                     DDVLDSAIRAFGEPGDVVAYPDPSFAMIPIFARMNGLVGAPIPLTAQNDADVEQYIQT
                     NATVSYLCSPNNPTGASFSRDSIEQVASAVTGVVIIDEAYAEFAGWNCLDLLARFPRV
                     VITRTLSKAFGLAGLRVGYALGEPALVAEIEKSRGPYKVNAIAQHAAVAALTADRTWV
                     DGHIRDAIENRTRLRESLIAIGFKPLPSDSNFVLVPVNDAQNLDQQLRARGIAVRPFV
                     ALPNIGDALRISVGPWHLLEQCVAALQECAA"
     gene            complement(3895..>4994)
                     /gene="hisD"
                     /locus_tag="VLI40_13460"
     CDS             complement(3895..>4994)
                     /gene="hisD"
                     /locus_tag="VLI40_13460"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HSU98236.1"
                     /translation="PAWRAALDSLDRGLVKAMERSIRNLESVQRAFLPAASEMSPEPG
                     ILVGRRPDPVDRVGIYAPGGRAAYPSSVLMGAVPARVAGVRELLLCSPPGSAGLPSAV
                     VLAAAELAGVDRVFALGGAGAIGAMAYGTETVPAVDRIVGPGNAYVAEAKLQVAGVVA
                     IDSPAGPSELLVIADASSDPDVVVREALAQAEHDPRAVVVIVAVGQGVADCIAERLVR
                     ASSVQTRRDVVEESLRTRGAVLCAADIDEAIAFSNSFAPEHLLLALANAHELLPRCRN
                     AGTIFVGERSSVAYGDYMTGANHVLPTGGLARSYSGLSVLDFMRWTTYQVIDPAAAAG
                     LAEDVGVFADAEGLPAHAAAARQWASAGVTQ"
BASE COUNT          989 a         1694 c         1401 g          910 t
ORIGIN      
        1 cagaatgccg tcttccggaa accgtttctc gatccacgct cgtgcgcgct cctcggcgcc
       61 gcggtccgcg agagtcacgg gagagccgtc gtgcttcaca tcgacagtga gtgttctacc
      121 atactgggac atcgcgaagt ctcccgcaat gcgcgcgagc tcggtaacgg cgtcgagata
      181 cgactcgctc atgcggcgtt cctcacgggc aacaaggatc ctttcatgtg tgtcttgagc
      241 tccgatacag ttgccactcc gtcgtgcaga ataccggcga cgagcgcggc atcggcatgg
      301 cctgattgaa tgacgtcaac gacatcgcgc gcggatcccg cgccgccgga cgcgatcacg
      361 ggaacattca cagcgtccgc aacggcgcgg gtcaattcaa tgtcgtatcc atcgcgagat
      421 ccgtcacgat cgacgctcgt cagaagaatc tctccagcgc cgagccgctc acactcgcgc
      481 gcccactcga cagcatcgcg ctcagtcgcc gttcgcccgc catgcgtgta aacgcgccac
      541 gttccatctg tcattttcgc gtcgatactg gacactacgc attgcgcgcc aaacatcgct
      601 gccgcctcgg tcaacacttg cggattccgt accgcggcgg agttgatggc gaccttgtcg
      661 gcaccagccc gcaatacctg ggcgacatcg gcagcgcttc gcacgccgcc accgatggtg
      721 agcggtatga acagcctctc cgcggtccgt cgcgccacgt cgagcaacgt gccacgttct
      781 tcgatactcg cggcgatgtc cagaaaaact atctcatcgg cgccttctgc ctcgtaccgc
      841 gcggcaagtt ccacgggatc gcccacatcg cgaagattca cgaagcgcgt tcccttcacc
      901 acccggccgc cacggacgtc gagacacact atcaatcttc gagtcagcgt cactttacgt
      961 ccagcgaaac ggaacccttg gtgctgaata cggcaccggc tccagtatcg atcatggcct
     1021 tgcgcaccgc cagtccgagc gccttgaacg cggcctccac gatgtggtgt cgatcgatac
     1081 cgcgcaggac acggatgtga atcgtcgcct tcgcgttgtc tgcgaaggag cgcatccagt
     1141 gatcgtacag gctgctcggc accgggccgc gataatacgg ccgcccgccc atatcgacac
     1201 acgcctggac cagagcctcg tccatcggga tggtgcaatc gccatagcgt gcggccgacg
     1261 cgctgatgat atcggcgacc gcagagccca ttgcgatcgc gacatcctcg atggtgtgat
     1321 gtctcatatc tccggtcgcg cgcagcgtca catcgagacc ggaatagcgc gcgaatgtca
     1381 ccatcatgtg atccaggaac ggaacgcccg tcgcaatgtc gcccttccct tctccacgct
     1441 gaacctcgag ccggatctgc gtctcgcgcg tccgtcgctc cacaaccgtt ctttcattca
     1501 ttctgcaaac tcctcagcaa ccattcccgg atcgatcgcc cccgtataga gcgccatccc
     1561 tatgacaacc gatgcaacac cgcgatcctc cagtgcacgc agatcgccga tcgtgccgat
     1621 cccgccgctg gcacacacag gatgctcgct ctcctccacc acgtcttcca taagagagag
     1681 atcggttcct tccatgagac cttccttgtg caccgccgtg accatcacgc ctgccagcgg
     1741 aagcgcattc agctcttcga tgaaatccag tatgtagcga tccgaagtac gcgtccagcc
     1801 gcgtgtcacc acatgcctgt cacgcacatc agccgctact atcaacatac cggggaatgc
     1861 ctccgccatg tctccgagcc agttcgcgct ctcgacagcc ttcgtgccga gcacgacgcg
     1921 gttagcgccg tcgcgaagca gagattcgat tctctcttca tcgcgtacgc cgccgcctac
     1981 ctgtgctccc atggaagttg cacgcaacac ctcgcggatc acatccgcat tgctgccgcg
     2041 tcccgtcgcc gcgtcgagat ccacgatatg cagacgatga aaacccgcga actcccatct
     2101 gtgagcaacg cccggaggat catccagtcg aacctgctcg gcgtcgtacg aaccgccaac
     2161 gagctgaacg catgctccct cgcgaatgtc tatcgctggt attgcgatca tccaatcacc
     2221 ccgttgacga agtcgtgcac gaaactgact ccggcccggg agctcttttc cggatggaac
     2281 tgcacgccga cagcattggc gacggtcacg acagacgcga agcgatcgcg ctcgtgagtc
     2341 gtatatgccg tgatacaggc gtcatcatcc ggttcgcata catagctgtt cgcgaaatat
     2401 gcaacttccg gcagcgcttc atcgagcgat tcgacttcat tccatccgat ctgcggaatc
     2461 cgcctggctc tgagcctgcg tacgtggccg ggtatgacgc cgagccctgt acctgatccc
     2521 tcctcgctgc catcgaagag cagctgcatg cccagacaga tgcagagagt cggcagtccg
     2581 tcgaggattg cgtcgcgcat ttcggaagcg ccatcggcca gccgactggc tgcgttgctg
     2641 aacgccccta ccccgggcag taccagcgcg tcagttttca gagcggcact cggatcggtc
     2701 tgcaggcgca cctcgacgcc agctccaaca tccagagcct tcaccagtga gtgcatgttc
     2761 ccggcgccgt agtcaaagac ggtaatgatg gttcttccat tcatgcggcg cactcctgca
     2821 acgcggcgac gcactgttcc agcagatgcc atgggccaac cgagatgcgc aacgcgtctc
     2881 cgatgttcgg cagcgcaacg aacggccgga cagcaatgcc gcgtgcacga agctgctggt
     2941 ccagattctg tgcgtcgttc acagggacca gtacaaagtt gctgtcgctc ggcagtggct
     3001 tgaatccgat cgcaatgagc gactctcgca gacgcgtacg gttctcgatc gcgtcacgaa
     3061 tatgcccatc gacccacgtg cgatctgcgg tgagagccgc gactgctgcg tgttgagcga
     3121 tcgcgttcac cttgtacgga ccccgcgatt tttcgatttc cgcgacaagc gcaggctcgc
     3181 ccaacgcata accgacgcga agaccggcga ggccgaacgc cttggacaac gtgcgtgtga
     3241 tcaccacgcg agggaaccgg gccaacagat ccaggcagtt ccatcccgcg aattccgcgt
     3301 acgcctcatc tattatcacg acgccagtga cagctgacgc gacctgttcg atcgagtctc
     3361 gcgagaacga cgcaccggtc ggattgttgg gagagcacaa ataactgaca gtcgcatttg
     3421 tctggatgta ttgctcgacg tctgcgtcgt tctgcgccgt gagaggaatc ggcgcgccga
     3481 cgagaccgtt catccgggcg aagatcggaa tcatcgcgaa cgacggatcg ggatacgcaa
     3541 caacgtcacc cggctcgccg aatgcgcgga tcgccgagtc gagcacgtcg tccgagccgc
     3601 atcccgttac caccatgtcg ggtgacagac ccacataatc ggcgatcgcc tgcttcacgt
     3661 ctgccgcata cagcgccgga taccgtgtga tcgtgccaga tgcagcgtct gtaattgcgc
     3721 gtagagcggc cggtggaacg ccccagagat tggtattgtc actgagatcg atagcggccg
     3781 gcgcacgatt gggggcgtac agcgagatgg acctgtacgt ctcgcgcgcc acggttccac
     3841 tctcgcgcgg cgaaacagca tccaacccat cagcgtctcg tgccgagagg cgcgtcactg
     3901 tgtcactccg gcagacgccc attgccgtgc cgccgcggcg tgcgcgggca aaccctcagc
     3961 atccgcgaat acacccacat cttccgccag acccgctgca gcagcaggat cgatcacctg
     4021 atacgtggtc catcgcatga agtcgagcac cgacagaccc gagtaggagc gtgcaaggcc
     4081 gcccgttgga agtacgtgat tggcgcccgt catgtagtcg ccgtacgcaa cggagctgcg
     4141 ctcgccgacg aatatcgtcc ccgcgttacg gcagcgtgga agcaactcgt gtgcattcgc
     4201 cagtgcgaga agcagatgct ccggcgcgaa cgagttgctg aaggcgattg cttcgtcgat
     4261 gtccgcggcg cacaacacgg cgccgcgtgt cctgagcgac tcctccacaa catcgcgccg
     4321 ggtctgcacg gaagaggccc tgacgagtcg ctcggctatg cagtcagcga caccctgccc
     4381 gacagcaact attacgacaa ccgcgcgtgg gtcatgttcc gcctgcgcca gcgcctcacg
     4441 taccactacg tctggatcgg agctcgcatc agcgattacc agcaactcac tcgggccggc
     4501 tggcgagtct atcgcgacga cccccgctac ctgcagcttg gcctccgcga catacgcatt
     4561 gcctggcccc actatccggt ccacagccgg tacggtctcg gtgccgtaag ccatcgctcc
     4621 gatcgctccg gctccgccga gtgcgaatac gcgatcgacg cctgcgagct cggcggcggc
     4681 aaggactacc gcagacggaa gtcccgcgct accgggcggt gagcaaagaa gcagctcgcg
     4741 gacgccggct actcgcgctg gaaccgcccc catcagaacg ctgctcggat aggcggcccg
     4801 cccgcccggc gcatagatcc ccacccggtc gacgggatcc ggccgacgtc caacgagaat
     4861 accgggttca ggcgacatct ccgaggctgc cggaaggaag gcccgctgca ctgattcgag
     4921 gttccggatg ctgcgctcca tcgcctttac aagaccgcga tccagcgaat ccagagcagc
     4981 ccgccaggct gggc
//
LOCUS       DATIMD010000602        10436 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1991839, whole genome shotgun sequence.
ACCESSION   DATIMD010000602 DATIMD010000000
VERSION     DATIMD010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 10436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10436
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1991839"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            59..1627
                     /gene="dacB"
                     /locus_tag="VLI40_13465"
     CDS             59..1627
                     /gene="dacB"
                     /locus_tag="VLI40_13465"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HSU98237.1"
                     /translation="MQRNRNILLVLIAMALAFPVATASAQKTSKKRKKAAVVQNHRRK
                     PSRSRSPKAASPIAAVAHYTSPRSAAALASDLGIFLERTHSGQWGVMITSVSRGDTLF
                     SRNPGLPLRPASTMKLFTTGLAFDRFGPEYQFSTDVLRDGPVSSDGTLHGNIILRGDG
                     DPSLSGRFLDGGPNAPMAMLAQRVVAAGIKHITGDVIGDATAFDDSLIPDGWLHRYLG
                     AGYAARVSGLSLNENIVWVAVSPGADGHAQVALEPMTTAMTIVNKARTVGGRGANLRM
                     SKKSDGTITVTGSIGRQAGTRRYSYVVDDPAMFATGALRAALQAAGVAVGGTTRLAPT
                     PAKAVKVASLASPTLARMVSAMNRESINHYAELLFRDGARGPQRTVQGTVANGNHAMH
                     EFFARVGADTSTIYNADGSGLSVNDRLTARAMVQLLDYAHRATWGPEFHASLPVAGES
                     GTQRMRMKGSPAQGNLHAKTGTTNDVIALAGYVTATDGEILAFSFLYNGSDRWNAKST
                     IDVMGETLASFARD"
     gene            complement(1733..2875)
                     /locus_tag="VLI40_13470"
     CDS             complement(1733..2875)
                     /locus_tag="VLI40_13470"
                     /inference="COORDINATES: protein motif:HMM:NF027964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HSU98238.1"
                     /translation="MRMLVLGAGLQGSACAYDLLQNPDVTEVRLADLHIDHLADFLKP
                     YSGKRLLPTPLDVRDADAVRALMRGCDAVMSAIPYYFNLDMAKYAVEVGVNFCDLGGN
                     TDIVFEQKKLDSRAREQKCTVIPDCGLAPGMDTILAQYGISQLDEVDSVKIFVGGLPQ
                     HPEGPLKYQIVYSLEGVLDYYTTLSWVVRNGKRAQVTALSEIEPVEFAKPVGELEAFH
                     TAGGLSTLPFRYEGKIKTMEYKTLRYPGHAKIMEAIRDLGLLDLDPINVKGTKVAPRD
                     VAVAAMGPHLTKPKSPDLVALRVEVSGRKNGSPKKLGWELIDKYDAEHGISAMMRTTG
                     YSLSITGQMQARGEIKPNGVHTPDECIPAKEYIEELGKRGINIRAI"
     gene            3215..3649
                     /locus_tag="VLI40_13475"
     CDS             3215..3649
                     /locus_tag="VLI40_13475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HSU98239.1"
                     /translation="MTWQSHLLTTPDQIGDLLARSRRIAVLGIKPDPQQPAYYVPEYT
                     QRAGYEIIPVPVYYPDLKEVLGEPVYRSLVAVPGDIDIVDVFRRPVDIPKHIDDIIAK
                     KPKAVWFQLGIRNDEAAEAFARAGIDVVQDHCMLVELKRIGR"
     gene            complement(3767..4894)
                     /locus_tag="VLI40_13480"
     CDS             complement(3767..4894)
                     /locus_tag="VLI40_13480"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HSU98240.1"
                     /translation="MPVVIAESGDQLEALRAALRKAEGELLRTRQEAESKRHLVDIMH
                     EVMGNLSTEEIFHMVARRLARALQLSHSSVILARPGDARGMVATAFEQPNLANLEIEL
                     DRYPEVSAALDQKRPVLIQDLQTSPWYARLREQWARDGTRMNVRSVIAIPFAFEKMRT
                     GVFLLRRTTDQDPLAASDVEFADTVIKSAVNAIEQAHTIEQTKADNARLEALAHTDPL
                     THLLNRRALTIRLVAELERVRRYNSPLTMLMIDLDHFKLVNDTFGHLVGDEVLRGIGM
                     ILQRAVRSVDMVARYGGEEFVVVLPETGEMGAVAFAERIRQRVEQHNFEAARTSSVRV
                     TVSIGVSCFPSPQIDSAEDLFARADAALYRAKDRGRNQVCV"
     gene            complement(5055..7571)
                     /gene="gyrA"
                     /locus_tag="VLI40_13485"
     CDS             complement(5055..7571)
                     /gene="gyrA"
                     /locus_tag="VLI40_13485"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HSU98241.1"
                     /translation="MTAPNNRERILPRLIHEEVQESFINYSMSVIVSRALPDVRDGLK
                     PVHRRVLYAMNELGLVPGRPYKKSATVVGDVLGKYHPHGDSSVYDALVRMVQDFSLRY
                     PLVDGQGNFGSVDGDNAAAYRYTEARLTRIATEMLGDIDKNTVDFQPNFDDRLQEPRV
                     LPSAMPNLLVNGSSGIAVGMATNIPPHNLREVTSALVALIEDPDLPASALRKHIKGPD
                     FPTAGYIYGTAGITDYQETGRGRIVMRARAVIEERESSNRAQIVVTELPYQVNKSRLL
                     IDIRDQVREGKLEGISDLRDESDRDGMRMVIELKRDAIPRVVLNQLYKHTAMQSTFGV
                     IMLALVPDSVTGQLVPKVLPLKDVLMHFIAHRHEVVTRRTQFELDKALEREHILEGLK
                     IAVDNIDAVIKLIRAAKDTPTASTQLQARFKLSERQAEAILNMRLAKLTGLEIEKLEA
                     ELKDLRAFIKEMRDILASRPRRMRIIRDELEKINATYGDERRSEITNDQGEFSVEDLI
                     AEEDMVITISHTGYIKRTSTSTYRKQRRGGRGLNGQGLKEEDFIEHLFIGSTHDYILC
                     FTDDGRCFWLKVHEIPQAGRASRGKPIVNLINVQPDTQIRAVVPVREFGDTQSLLFCT
                     RRGTVKKTALSAYANPRANGIKAIKIESGDELIDVQVTSGTNDVVLATKHGLSVRFHE
                     KDVREMGRDTTGVKGIELRPDDAVVGMVVIKREATLLVVTEKGLGKCSHIDDYRVQKR
                     GGKGIITVNRTDKTGDVVSLMEVLPEDEIMLITKHGVIIRSSVSQVRVTGRIAQGVKL
                     VNLDDGDLVTAVARVIPEDKVEGDDGAVDEETVETLADEE"
     gene            complement(7777..8523)
                     /locus_tag="VLI40_13490"
     CDS             complement(7777..8523)
                     /locus_tag="VLI40_13490"
                     /inference="COORDINATES: protein motif:HMM:NF017373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98242.1"
                     /translation="MDSTSFGDRLQDSFDQLYHYVPALFGALVILFAGYLLARLLEKG
                     TDKLLRRVHFNRILERGGVLQAVERSGSHMNPTRVTASVVFWFVMFAVLMIAANALGL
                     SSLGNMFGELVSYIPSLIAAIVIIIVGIVLGDFVGGLIMASAGAIHGGPTLSRFGKGG
                     VILIAIFMALQELGVATDIVTTAFAILFGAIALSASLAFGLGNRDLAGEVTRSWYNRY
                     KAERESIDRENAAQDAADRTDEFESDSGRF"
     gene            complement(8633..8857)
                     /locus_tag="VLI40_13495"
     CDS             complement(8633..8857)
                     /locus_tag="VLI40_13495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98243.1"
                     /translation="MAESAQYTPIQLAEIKDAFIGEQPVICPVCGGRMTSRSIGGGSF
                     GLGYSRQREWLICGSCHRSAIFDVKRGTRN"
     gene            9066..9299
                     /locus_tag="VLI40_13500"
     CDS             9066..9299
                     /locus_tag="VLI40_13500"
                     /inference="COORDINATES: protein motif:HMM:NF014643.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008219 - cell death [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HSU98244.1"
                     /translation="MKIVTMHDAKTNLSRIVEEARAGADIVIARGKQPLVRLVPIDQP
                     PVKRQFGAMRGQFKVPASFFDPLPEEELQAWGE"
     gene            9312..9701
                     /locus_tag="VLI40_13505"
     CDS             9312..9701
                     /locus_tag="VLI40_13505"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HSU98245.1"
                     /translation="MASLLLDTHTLLWWLAGDRRLTAKAREAIGDEANEVFVSAASTW
                     EIATKIRIGKLPAPALVGGGLTRAIAAQGFETIAITADHGERAGSLRGTHRDPFDRML
                     IAQAQAEAMAIVSNETLFDEFGVTRMW"
     gene            9763..>10436
                     /locus_tag="VLI40_13510"
     CDS             9763..>10436
                     /locus_tag="VLI40_13510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSU98246.1"
                     /translation="MRIAIIGWNLRANLLLASAVAMTSQACTKSASTGAPITMAIVNA
                     HIWTGNPKQPWAEAIALRGDRIAIVGSNDDIKRALGDVKPIDAQGEMVTPGFIDSHVH
                     FLDGGRQLSSVQLRDARTPAEFIKRIKEYAATVPAGTWITGGDWDHQLWGGELPRHEW
                     IDSVTPNNPVAVARLDGHMILANALAMRDAKVSTATPDESGGTIVRDASRAPTGIFKD
                     NAQSLI"
BASE COUNT         2001 a         3163 c         3261 g         2011 t
ORIGIN      
        1 cattctcacg gtactctacc ggcgaaagat tttcctcaaa gtatagcttc tatttttggt
       61 gcaaagaaat cgaaacattc tgctcgttct gatcgcgatg gcgctcgcat ttccagttgc
      121 tacggcgagc gcgcagaaaa ccagcaagaa acgaaagaaa gcggcagtag ttcagaatca
      181 cagacgcaag ccatcgagat cgaggtcgcc caaggcggcc tcgccaatcg ccgcggtcgc
      241 gcactacacc tccccgcgca gcgcggcggc ccttgccagc gatctcggga tctttctgga
      301 gcgcacgcat agcggtcagt ggggtgtgat gatcacatcg gtctcgcgcg gcgacacact
      361 cttctcgcgc aatccgggcc tgccactcag acccgcgtcg acgatgaagc tctttacgac
      421 cgggctcgcg ttcgatcggt tcgggccgga ataccagttc agtacggacg tcctgcgcga
      481 tgggcccgtt tcgagtgacg gaacgctcca cggcaacatc atcctgcgtg gagacggtga
      541 cccgtcgctg tccggccgct tcctcgacgg cgggccgaac gctccgatgg ccatgctcgc
      601 gcagcgtgtc gttgctgcag ggatcaagca catcaccggt gatgtgatcg gtgacgcaac
      661 ggcgttcgac gattccctca ttcccgacgg atggctgcat cgctacctcg gcgcgggtta
      721 cgcagcgcgt gtgagcggac tgtcgttgaa cgagaacatc gtatgggtcg cagtctcgcc
      781 cggcgctgat ggccatgcgc aggtggctct tgagccgatg acgactgcca tgactattgt
      841 caacaaggcg cgcacggttg gcggcagggg cgcaaatctg cgcatgagca agaagtccga
      901 cggaaccatc acggtcacgg gatcgatcgg gcgccaggct ggcacgcgtc gctactcgta
      961 tgtggttgac gatccggcga tgtttgcaac gggagcgctg cgcgcagcgt tgcaggcggc
     1021 aggtgttgcc gtcggtggca cgactcgcct cgcgccaaca cccgcgaagg cggtgaaggt
     1081 cgcgagcctc gcctcgccga cgctcgcgcg gatggtgagc gcgatgaatc gcgagagtat
     1141 caatcactac gccgagctgc tgttccgcga tggtgcgcgt ggaccgcaac gcacggttca
     1201 gggaacggtc gcgaacggca atcacgcgat gcacgagttt tttgcgcgcg tcggagccga
     1261 cacgtcgacg atctacaacg ccgacggaag cggcctgtcg gtgaacgacc gtctcacggc
     1321 gagagcgatg gtgcagctgc tggattatgc gcaccgcgcg acgtggggtc ccgagttcca
     1381 cgcgtcgctt ccggtcgcgg gcgaaagcgg aacccagcgc atgcgcatga agggcagtcc
     1441 ggcgcaggga aacctgcatg ccaagaccgg aacgaccaac gacgtgatcg cacttgccgg
     1501 ctacgtcacg gcgaccgacg gcgagatact ggcgttctca tttctgtaca atggcagcga
     1561 tcgctggaac gcaaagtcga cgatcgatgt aatgggcgag acgctcgcga gcttcgcgcg
     1621 ggattgagta ctgcaggcag gtacgtcgcc tgcccgcagt tatgctacga gcgtcgttgc
     1681 gtccggacgt ttggtgcaac gacggacgca acgacggacg caacgccgga catcaaatcg
     1741 cgcggatgtt gatcccgcgc ttgcccagct cctcgatgta ttccttcgcc gggatgcact
     1801 cgtcgggcgt gtgcacgccg ttcggcttga tctcgccgcg cgcctgcatc tgaccggtga
     1861 tgctcagcga gtacccggtg gtccgcatca tcgcgctgat tccgtgttcc gcatcgtact
     1921 tgtcgatgag ctcccaaccg agctttttcg gagagccgtt cttgcggccg ctcacctcga
     1981 cgcgcagcgc gacgaggtcc ggtgacttgg gcttggtgag gtgcggcccc atcgccgcaa
     2041 ctgccacatc ccgcggcgcg accttggtgc ccttcacgtt gatgggatcc aggtcgagca
     2101 agcccagatc gcgaatcgct tccatgatct tcgcgtgacc gggatagcgt agcgtcttgt
     2161 actccatcgt cttgatcttg ccttcgtagc ggaatggcag ggtcgagagt ccgccggcgg
     2221 tgtggaatgc ctcgagctca cccaccggct ttgcgaattc cacaggctcg atctcgctga
     2281 gtgcggtcac ctgcgcgcgc ttgccgttgc gcacgaccca cgacagtgtc gtgtagtaat
     2341 cgagcacgcc ttcgagcgag tagacgatct gatacttgag cggtccttcc ggatgttgcg
     2401 gcaatccgcc gacaaagatc ttgaccgaat cgacctcgtc cagctgtgag atgccgtact
     2461 gtgcgagaat ggtatccatt cccggagcga gtccgcagtc gggaatcacg gtgcacttct
     2521 gctccctggc acggctgtcg agcttcttct gctcgaagac gatgtcggta ttgccgccaa
     2581 ggtcgcagaa gttgactccc acctcgaccg catacttcgc catgtcgagg ttgaagtagt
     2641 acgggatcgc gctcatcacg gcgtcgcagc cgcgcatgag ggcgcgcacc gcatcggcgt
     2701 cgcgcacatc caatggtgtc ggaagaaggc gcttcccgga gtacggcttg aggaagtcgg
     2761 cgagatggtc gatgtgaaga tcggccagcc gaacctcggt gacgtcggga ttctgcaaga
     2821 gatcatacgc gcaagccgag ccctgcagcc ccgcgcccaa gacgagcatc cgcattctgg
     2881 aattcctcaa acgaaagtga aacaacgtga tgtggtaaaa tcaaaaacct cccacgacca
     2941 acgtgggagg cgataaatca acaaggccct gacgccaatc cgattgttac agcctcgaaa
     3001 aggtcgtccc cacgcgtgag tactcgacgc gtgcgttggg agccgcaaaa aggctcggac
     3061 gttccattgc tggagtgagg atgttggcca tcagatcaga atgctacgga agatcacggc
     3121 gagagtcaag gcggcggacc atggggcgga ccgtgcaacg tacgatgcga agccgcagcc
     3181 gctcgcccgt tccgcgggtg gctattgttc agatatgacc tggcaatccc atcttctcac
     3241 gacgcctgac cagatcggcg acctgctagc gcggtccagg cgcatcgccg tactcggcat
     3301 caagcccgac ccgcagcaac cggcgtacta cgttccggaa tacacacagc gcgctggcta
     3361 cgagatcatt cctgtcccgg tgtactatcc ggacctcaag gaagtacttg gcgagccggt
     3421 gtatcgctcg ctggttgccg ttcccggcga catagacatc gtcgatgtgt ttcgacggcc
     3481 tgtcgacatt ccaaagcata tcgacgacat aatcgcgaag aaaccgaagg cggtctggtt
     3541 tcagctcggc attcgaaatg acgaagcagc ggaagcgttt gcgcgcgccg gaatcgacgt
     3601 cgtgcaggac cactgcatgc ttgtggaatt gaaacggatc gggagatagg gctgtcatcg
     3661 catccggaga tcgataacat ggattcccga ggcgcggata aatccgcgcc ctacagcggg
     3721 aatgacagat atgcgagttc cgctttcgcg cggacgacaa gtcccgctaa acgcagacct
     3781 gattccgccc gcgatccttg gcgcgataca gcgcggcgtc ggcgcgtgca aacagatcct
     3841 ctgcgctatc gatctgcggc gacgggaagc atgagacgcc gatcgaaacg gtgactctca
     3901 cggacgaagt ccgcgccgcc tcgaagttgt gctgctccac ccgctgccgg atacgttcgg
     3961 cgaatgcgac tgcgcccatc tcacctgttt ccgggagaac gacgacaaat tcctcgccgc
     4021 cgtagcgcgc gaccatatcc acgctgcgca ccgcccgctg caggatcatg ccgattccgc
     4081 gcagcacttc gtcgccgacc agatgaccga aggtgtcgtt gacgagcttg aagtgatcca
     4141 gatcgatcat gagcatcgtc agcggcgagt tgtagcgtcg cacccgttcc agttccgcta
     4201 ccaggcgaat cgtcagggcg cggcgattga gaaggtgggt gagcgggtcg gtgtgcgcca
     4261 gagcttcgag acgcgcattg tcggcctttg tctgctcgat ggtgtgcgcc tgctcgatcg
     4321 cgttcacggc gctcttgata accgtatcag cgaactcgac gtcgctggcc gcgagaggat
     4381 cctgatcggt cgtacgcctg aggaggaaca cgccagtgcg catcttctcg aacgcaaacg
     4441 ggatcgcgat gacggagcgc acgttcatgc gcgtgccgtc tcgggcccac tgctcgcgca
     4501 aacgtgcgta ccatggactt gtctgcaggt cctggatgag taccggccgc ttctggtcca
     4561 gcgcggcgga tacttcagga tagcgatcga gctctatctc caggttcgcg agattgggtt
     4621 gctcgaacgc ggtggcgacc attccgcgtg cgtcgcccgg tcttgcaaga atgacggacg
     4681 aatgggagag ctgcagcgcg cgggccaggc gtcgcgcgac catgtggaaa atctcctccg
     4741 tggagagatt ccccatgact tcgtgcatga tgtcgacaag gtgacgcttg ctttccgctt
     4801 cctgccgcgt gcgaagcagc tcgccttctg ccttgcgcag agcagcgcgc agtgcttcga
     4861 gttgatcgcc ggattctgcg ataacgacag gcaccgcagc atcggggaga ttctgcggcg
     4921 gtggatcaga ttccgttcca ctcgcactcg cccgagcggg atcggaatct ccgtccgagg
     4981 gagctccttt cggctctccc tcggacgaac tccgatccgc gttcacggga tgcggcggct
     5041 cagtcaggtc cttgtcactc ttcgtcagca agcgtttcga ccgtctcctc atccacggcg
     5101 ccgtcgtcac cctcgacctt gtcctcggga atgacacggg cgaccgcggt cacaagatcg
     5161 ccatcgtcca gattaacgag cttaacaccc tgcgcgattc ttcccgtcac gcgcacctgc
     5221 gaaaccgacg aacgtatgat aacgccgtgt ttcgtgatga gcatgatctc atcttccggc
     5281 agaacttcca tcagcgatac aacgtcaccg gtcttgtcgg tgcggttgac cgtgatgatg
     5341 ccctttccgc cgcgcttctg aaccctgtaa tcatcgatgt gcgagcactt gccgagtccc
     5401 ttctccgtta cgacgagaag agtcgcctcg cgcttgatga cgaccattcc aacaacggcg
     5461 tcgtccgggc gtagctctat gcccttcacg ccggtggtgt cgcggcccat ctcgcgcaca
     5521 tccttctcgt ggaaccgcac cgacagaccg tgctttgttg cgagcacgac atcgttggtc
     5581 ccacttgtaa cctgcacatc gatcagctcg tcgccggact cgatcttgat tgccttgatt
     5641 ccgttggcgc gcggatttgc atacgccgac agagcggtct tcttgaccgt tccacgacga
     5701 gtgcagaaca gcaacgactg ggtgtccccg aactcacgta cgggcaccac agctctgatc
     5761 tgagtatcgg gctggacgtt gatcaggtta acgatgggct tgcccctgct ggcgcggccg
     5821 gcctggggga tctcgtggac cttgagccag aagcagcgcc cgtcatccgt gaagcagagg
     5881 atgtagtcgt gggtcgagcc gatgaacaga tgctcgatga agtcctcttc cttgagcccc
     5941 tgcccattga gaccgcgccc gccgcgccgc tgcttgcggt aggtcgaggt ggacgtccgc
     6001 ttgatgtatc cggtatgcga tatcgtgatc accatgtctt cctcggcgat cagatcctcg
     6061 acggagaatt cgccctggtc gttggtgatc tcggagcgac gctcgtcgcc gtaggtcgcg
     6121 ttgatcttct ccagctcatc gcgaatgatc cgcatgcggc gtggacgcga tgcgaggatg
     6181 tcgcgcatct ccttgatgaa cgcgcgcaga tccttgagct ctgcttccag cttctcgatc
     6241 tcgagaccgg tgagcttggc gagacgcatg ttgagaatcg cttccgcctg ccgctcgctc
     6301 agcttgaaac gcgcctggag ctgcgtgctc gcagttggcg tgtccttggc tgcacggatg
     6361 agcttgatca ccgcgtcgat gttgtcgacg gcgatcttca agccttcgag gatgtgctcg
     6421 cgctcgagtg ccttgtccag ctcgaactgg gtgcgccgcg tcacgacctc gtgacggtgc
     6481 gcgatgaagt gcatcaacac atccttgagc ggcaacacct ttggcacgag ctggcccgtc
     6541 accgaatcgg ggacgagcgc gagcatgatc acgccgaacg tggactgcat cgcggtgtgc
     6601 ttgtagagct ggttcagaac cacgcgagga atcgcgtcgc gcttgagctc gatgaccatg
     6661 cgcattccgt cgcgatcgct ctcgtcgcgc aggtcgctga tcccttcgag cttgccttca
     6721 cgaacctgat cgcggatgtc gatgagcagc cgcgacttgt tgacctgata cggcagctcg
     6781 gtgacgacga tctgtgcacg attggacgac tcgcgctcct cgatcaccgc gcgcgcgcgc
     6841 atgacgatgc gaccgcgacc agtctcctgg taatcggtga ttccggcggt gccgtagatg
     6901 tagccggccg tcgggaaatc gggtcccttg atgtgcttgc ggagagcgct ggccggaagg
     6961 tccggatctt cgatgagtgc tacgagcgcg ctcgtgactt cacgcagatt gtgcggcgga
     7021 atgttggtcg ccattccgac cgcgataccg gacgagccgt tgacgagcag gttgggcatc
     7081 gccgacggaa gaacgcgggg ctcctgcagc cgatcgtcga agttcggctg aaaatcgacg
     7141 gtgttcttgt cgatgtcgcc gagcatctcg gttgcgatgc gtgtgagccg cgcttcggtg
     7201 tagcggtagg cggccgcgtt gtcgccgtcg acagatccga agtttccctg accgtccacc
     7261 agcggatagc gcagcgaaaa gtcctgcacc atgcgcacga gcgcgtcgta cacggagctg
     7321 tcaccgtgcg ggtgatactt gccgaggacg tcgccgacga cggtcgccga cttcttgtac
     7381 ggacgtccgg gaacgagacc aagctcgttc atcgcgtaca gaactcggcg atgcacgggc
     7441 ttgagaccgt cgcgcacatc gggtagcgcg cgcgaaacga tgacgctcat cgagtagttg
     7501 atgaacgatt cctggacctc ttcgtggatc agccgcggaa gaatgcgttc gcggttattt
     7561 ggggctgtca tgacgtgtcg ataccgctct tgcggcgtgc tcccgagggg gcgcacacct
     7621 gatgatttga gctaattcag gggaaccttg aaatatagcc tgcaggaggg cttttggcaa
     7681 ccccgatcag gcaagctaag ttattgtgcg acaataactt agcttcatac cattcaaacg
     7741 tccgaaagtt gcctgttttc ggcgtttatt cggggcctaa aatcgccccg aatccgactc
     7801 gaattcatcg gtccggtcgg ccgcatcctg ggcggcattc tcgcggtcga tcgactcgcg
     7861 ctcggccttg tagcggttgt accagctgcg cgtcacctcg cccgccagat cgcggtttcc
     7921 gagtccgaat gcgagcgacg ccgagagcgc gatggcaccg aaaaggatcg cgaatgccgt
     7981 cgtgacgatg tcggtcgcga cgccgagctc ctggagcgcc atgaagatgg cgatcagaat
     8041 cacgccgccc tttccgaacc gcgacagtgt cggaccgccg tggatcgcgc cggcggaggc
     8101 catgatgagg ccacccacga aatcgccgag cactatgccg acgatgatga tgactatcgc
     8161 cgcgatgaga ctcgggatgt agctcaccag ctcgccgaac atgttgccga gcgacgagag
     8221 accgagcgcg ttggcggcaa tcatcagcac ggcgaacatc acgaaccaga agacgacgct
     8281 cgcggtaacg cgcgtcgggt tcatgtggga gccggagcgc tccactgcct gaagcacgcc
     8341 accgcgctcc aggatgcggt tgaaatgcac acgtcggagc agcttgtcgg ttcccttctc
     8401 cagcaacctg gcgaggaggt atccggcgaa gaggattacg agggcgccga agagcgcagg
     8461 aacgtagtgg tagagctggt cgaagctgtc ctgcaggcgg tcgccgaagc tggtcgaatc
     8521 cataggtggg aaatctacgg acaaccgccc aaccgtgggc aacgagtttt atgcgatgac
     8581 gcgagtgcga cgcgggctcg tgccgcttgc gcggtttccg ctgcgcgcgt tatcagttgc
     8641 gcgtgccgcg cttgacgtcg aagatcgcgc ttcgatggca actgccgcat atgagccatt
     8701 cgcgttggcg agaatagcca aggccgaatg agccgccgcc gatcgacctg gaagtcatgc
     8761 ggccgccgca gaccgggcag atgacaggct gctcgccgat gaaggcgtcc tttatctcgg
     8821 caagctgaat gggggtgtac tgggcggact cggccatgcc tgcattctac acaaatgcgg
     8881 catgtgttgc cggcaagtcg cgatccactg gcatgacctg gatacagtgg ccactggcga
     8941 gccatgatga ggcacggtta cggccagcga ggccgcgaat ccagccttcg acgcgggcag
     9001 cggcgcggaa aacttgtccc cctcgtgtgc tttagctaag cttagtgggc ccggaccata
     9061 ttattatgaa gatcgtaacc atgcacgacg ccaagaccaa cctgtcccgc atcgtcgagg
     9121 aagcacgcgc gggggccgac atcgtcatcg cacgcggcaa gcagccgctg gtgcgtctcg
     9181 ttccgatcga ccagccgcct gtgaagcgcc agttcggcgc gatgcggggc cagttcaagg
     9241 tgccggcgtc gtttttcgat ccgctccccg aggaggagtt gcaggcgtgg ggcgagtgag
     9301 ccgttactga catggcgtcg ctcctgctcg atacccacac cctgctctgg tggctcgcag
     9361 gcgatcggcg gctcaccgca aaggcacgcg aggcgatcgg cgacgaggcg aacgaggtct
     9421 tcgtcagcgc tgcgagcacg tgggagatcg cgacgaagat ccggatcggg aagcttcctg
     9481 caccagcgct cgtgggcggc ggtctcacgc gcgccatcgc cgcgcaggga ttcgagacca
     9541 ttgccattac cgcagaccac ggagagcggg cgggctcgct gcgcggcacg caccgcgatc
     9601 cgttcgaccg gatgctgatc gcccaggcgc aggccgaggc gatggcgatc gtgtccaatg
     9661 aaacgctgtt cgacgagttc ggtgtgacgc gaatgtggta acgcgcgtga acaacgaccg
     9721 tatattctgc gacgagcaca atccctcccg cctcgtccaa tcatgcgcat cgcaatcatc
     9781 ggctggaacc tccgcgccaa cctgctgctc gcgtcggcgg tagcaatgac gtcgcaggca
     9841 tgcacgaaat ccgcatccac cggcgctccc atcacgatgg cgatcgtcaa cgcacacatc
     9901 tggaccggga atccaaaaca gccgtgggcg gaagcgatcg cgcttcgcgg cgatcgcatc
     9961 gcgatcgtag gatccaacga cgatatcaaa cgtgcgctcg gtgatgtaaa gccgatcgac
    10021 gcgcaaggcg agatggtgac gccgggattc atcgattcgc acgttcactt tctggacggc
    10081 gggcgacaac tgtcgtcggt gcagttacgc gatgcaagga cgccggcgga gttcatcaag
    10141 cggataaagg agtacgcagc gactgttcca gcgggcacgt ggatcaccgg cggcgactgg
    10201 gaccaccagc tgtggggcgg cgaactgccg cggcacgaat ggatcgattc ggtgacgccg
    10261 aacaatcctg ttgctgtagc gcgactcgac ggtcacatga ttctggcgaa cgcgctggcc
    10321 atgcgcgacg cgaaggtttc aaccgcgact ccggatgaaa gcggtgggac gatcgtgcgc
    10381 gacgcgtcgc gcgcgccgac gggcattttc aaggacaacg cacagagcct gatctt
//
LOCUS       DATIMD010000603         3510 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1992450, whole genome shotgun sequence.
ACCESSION   DATIMD010000603 DATIMD010000000
VERSION     DATIMD010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3510
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1992450"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..791)
                     /locus_tag="VLI40_13515"
     CDS             complement(<1..791)
                     /locus_tag="VLI40_13515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98247.1"
                     /translation="MLLRSIVSFRSPILLSLLLLPLAPARLRAQQKFTTQVMIVPTFH
                     GPERGLAAKASDIIRNRVAGAFPKSELRVISGGDMDDWLRLSGFDESTVLSEGELKEL
                     AKKFRADERITGTAIRTASRVRVDAALTLIRDLRLSQPLSADGASVNEAAEAVARDAI
                     AARRQLVPLRQCENLAREGKNAEAAAAAAVGIAAYAQAIPTRACLLNALSKIEATPDS
                     IINVAQATLALSATNPIALERMAQALDAKGQGGAAAPYWTRLLAT"
     gene            complement(997..1419)
                     /locus_tag="VLI40_13520"
     CDS             complement(997..1419)
                     /locus_tag="VLI40_13520"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HSU98248.1"
                     /translation="MRLMTCFALATALAACGGGGSSGLSTSPGGNNQNPGATGTTPPP
                     ANLVTLANQAFSPSTITVAAGSTVNWKWNDCSGGDGYGGGYTNCVMHNVTFDDATGIA
                     STTQDQGSFSRTFATKGTYKYHCSIHGAMGMTGEVVVQ"
     gene            complement(1567..2460)
                     /locus_tag="VLI40_13525"
     CDS             complement(1567..2460)
                     /locus_tag="VLI40_13525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98249.1"
                     /translation="MYTPYKNSDSGYENPAMLAASNDTTWDTPAQIKNPIVPYPGIEK
                     YNSDPDHAFDPATGRMVQIYRVVADSFNKIMIMSTANAKQWTPAAIAFKERNHDAVSP
                     SLIIERDRQAKIWYVRTGSDGCSSSSSSVQLRVAMPDSNSRYERSDWSAPTPVSLALP
                     GYVVWHLDITSLPNNGGYMGLVVGYPKGFTCGSSDLWLATSPDGITWRTYPMPLMWRT
                     MKLAKKRAISTWYRGTLRYDAKTDSLHLWPSALSGTTWTVFHTAVKLGELVGLLEVAQ
                     PADFRSTLFSLKPSSPAMRMP"
     gene            complement(3050..>3510)
                     /locus_tag="VLI40_13530"
     CDS             complement(3050..>3510)
                     /locus_tag="VLI40_13530"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF015727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008927 - mannonate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006064 - glucuronate catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HSU98250.1"
                     /translation="DPPWSIFGLPRIITSGPSLDRLTRLVDSPANGVTFCTGSLGADP
                     SNDLPRMVADLAERGRIHFAHCRNVKVTGTKKFSETPHPSRLGDVDLHGVLAALHRAG
                     FDGPIRSDHGRMIWGERGRPGYGLYDRALGATYLQGLWEGIEKAGRMVEA"
BASE COUNT          678 a         1039 c         1120 g          673 t
ORIGIN      
        1 tcggtcgcga gcaatcgcgt ccagtatgga gcggctgcgc ctccctggcc cttcgcgtcg
       61 agtgcctgag ccatgcgttc gagcgcgatc gggttggtgg cggacagagc gagtgtcgct
      121 tgcgcgacgt tgatgatcga atcgggagtc gcctcgattt tgctcagagc attcagcagg
      181 caggcacgcg ttgggatggc ttgagcgtac gccgcgatgc cgacggccgc ggccgccgcc
      241 gcttcggcgt tctttccctc gcgcgccaga ttctcgcact ggcgcaacgg aacgagctgg
      301 cgtcgagcgg caatcgcgtc gcgggcgact gcttccgccg cttcgttgac ggaggcgccg
      361 tcggcggaca atggctggct cagccgcaga tcgcggatga gcgtgagagc ggcatcgaca
      421 cgcacgcggc tcgcagtacg gattgctgtt cctgtgatgc gctcgtcggc gcggaacttc
      481 ttggctagct ccttgagctc gccctcgctc agcacagtgg actcgtcgaa tcccgagaga
      541 cggagccaat cgtccatgtc accgccggaa atgacacgaa gctcactctt tggaaacgct
      601 ccggccacgc gattgcgaat gatgtcagac gcctttgcgg cgagcccgcg ttccggaccg
      661 tggaatgtcg ggacaatcat cacctgcgtc gtgaacttct gctgcgctct tagccgggcc
      721 ggcgcgagcg gcaacagtag tagcgacaac aatatcggag atcggaatga cacgatcgag
      781 cgaagcagca tcgcggaaaa gcagctcgag ggcgtaggca cagccagaca tacgcaattg
      841 gtcttgaaag gtaacgcgct gaacacgcgt tttcgttgat aaacgccgaa ctctggcatg
      901 gcgaaaccca taacgccaaa acgcccgcgc tgtggcgcgg gcgttctgta cgacgagatc
      961 actacgagag gctatgcgaa gacaaagcag atttctctac tgcaccacga cttcgccggt
     1021 cattcccatc gcgccatgga tcgaacagtg gtacttgtag gtccccttcg tggcgaacgt
     1081 gcggctgaat gagccttgat cctgggtcgt cgacgcgata ccggtggcgt cgtcgaaggt
     1141 cacattgtgc atgacgcaat tcgtgtagcc accgccgtag ccgtcgccac ccgagcaatc
     1201 gttccacttc cagttgaccg tcgatcccgc cgcgaccgtg atcgtgcttg gcgagaaggc
     1261 ctggttcgcg agcgtcacca gattcgctgg aggcggagtc gtgccagtgg cacccggatt
     1321 ctggttgttc ccgcctgggc tggtgctgag cccactgctt ccgccgccgc cacacgcggc
     1381 gagcgccgtc gctaaggcaa agcaagtcat gagtcgcatt tgtcgcattc gtccctccgg
     1441 atcacacgcg gcaccgcccc ggggagtcgg gtgttgcctt gtgggttgtg aaagctggta
     1501 tcgagaagtc gccagcctta tccggtgggc accaagatgg ttcccagctc gtacgctgtt
     1561 cctaggtcag ggcatcctca tcgccggact cgagggcttg agtgagaaaa gtgtactgcg
     1621 gaaatcggct ggctgcgcga cctccaacag gcccacaagt tcccccagct tcacggcggt
     1681 gtgaaacacg gtccacgtcg ttccactgag cgccgagggc cagaggtgaa gtgagtcggt
     1741 cttggcatca tagcggagag tcccgcgata ccatgtgctg atcgcgcgtt tcttcgcgag
     1801 cttcatcgtc cgccacatga ggggcatggg atatgtacgc cacgtgatcc cgtcggggct
     1861 cgttgccaac cacaggtcac tcgagccgca ggtgaatccc ttgggatatc cgacgacaag
     1921 acccatgtag ccgccgttgt tcggcagtga cgtgatgtcc agatgccaga caacgtaccc
     1981 tggaagcgcg agactgaccg gcgtcggcgc ggaccagtcg gaacgctcgt aacgcgaatt
     2041 gctgtcgggc atcgcaacgc ggagttggac tgagctcgac gatgagctgc acccgtcgct
     2101 gccggtgcgg acgtaccaga tcttcgcctg ccgatcacgc tcgatgataa gcgacggaga
     2161 cacagcatcg tgattccgtt ccttgaacgc gatcgcggcc ggagtccact gcttcgcatt
     2221 cgccgtggac atgatcatga tcttgttgaa gctatcggcg acgacgcggt agatctggac
     2281 catgcgcccc gtcgcgggat cgaacgcgtg atccgggtcg gagttgtact tctcgatgcc
     2341 cgggtaggga acgatcggat tcttgatctg cgcgggcgtg tcccacgtcg tgtcgttcga
     2401 cgcggcgagc atcgccgggt tttcatatcc cgaatcagag ttcttatacg gggtgtacat
     2461 caaccagcag cgcgctccgc tccaaatgtc cggagggcag gcgatgtcgg gatggaccgc
     2521 gtccgacgaa agtgaatagc cgtcgggcgg aatgctgact ttggccaacc gctgaccgac
     2581 gagctcctcg acgcggtcgg ggatggagcg tgaatcaaac tgagtgttcg tcgagctggg
     2641 tgcgagtggt gcgtccgtcg gtcgcagcgg ccggggtgac gcgggaactg tgggattctg
     2701 agaatccgca caggcgacga gtgcgacggc gcacccgact cggtacacga agcgcatatc
     2761 cgattcctaa taacacggag tgaagttggt tcggcggtga cgacacgttc agtggatcga
     2821 atggattgag gtaaattccg cgcgtttcag cgcgggcgaa cataactcgc gaggacaaac
     2881 gatggcgcga tttgtatacc gcgcgctgga ttggcaattt cgagtccctc ggcgtggcga
     2941 ggtctcggcg gcggcgcgca acaagagtgc ggcgcaaagt ccgcaaagtg ttgcagcgat
     3001 ggaacagggc gcagagtgga gcgtggagca cacgcggacc ttcccagctt caagcctcga
     3061 ccatcctccc tgccttctcg atgccttccc acaatccctg gagatacgtc gcgccgagtg
     3121 cgcgatcgta caaaccgtag cccggtctgc cgcgctcgcc ccaaatcatg cggccgtgat
     3181 ccgatcggat tgggccatcg aaccctgcgc gatggagcgc ggcgagcacg ccgtgcaagt
     3241 cgacatcgcc gagacgcgaa ggatgcggag tctcgctgaa tttcttcgtc cccgtgactt
     3301 tcacattccg acaatgagcg aaatgaattc gccctcgctc agcgagatca gccaccatgc
     3361 gcggcaagtc gttggatgga tcagcgccaa gtgaaccggt gcaaaacgtc acgccattcg
     3421 ctggggagtc gacgagacgc gtcaggcgat cgaggctcgg accgctggtg atgattctcg
     3481 gcaatccgaa gatcgaccat ggtggatcgt
//
LOCUS       DATIMD010000604         5655 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2853998, whole genome shotgun sequence.
ACCESSION   DATIMD010000604 DATIMD010000000
VERSION     DATIMD010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5655
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2853998"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..367)
                     /locus_tag="VLI40_13535"
     CDS             complement(<1..367)
                     /locus_tag="VLI40_13535"
                     /inference="COORDINATES: protein motif:HMM:NF012900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98251.1"
                     /translation="MHVRIKFCGLTRAKDVDAAVALGCDYVGVIFAGGPRNRTISEAA
                     SILRHAGSARRVGVFGAPHATELNHYVTSVPLSVAQLHGDSSPRAVMAARTIGIDEVW
                     SVVPVVDGTLAGDAEELFQC"
     gene            complement(351..1199)
                     /locus_tag="VLI40_13540"
     CDS             complement(351..1199)
                     /locus_tag="VLI40_13540"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: protein motif:HMM:NF012444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HSU98252.1"
                     /translation="MPETQAFSAPRSSWTPPSGTLGELVRASHSRASDLLPQYDALRL
                     AAETAPATVSLRQALLQPTVGVIAEVKRRSPSKGSINPGLDALSKARSYADAGAAAVS
                     VLTEPDRFGGSIADLRSVASGVSVPVLRKDFIVAPVQLYEARANGAAAALLIVRALSD
                     AALSELVEAGSAIGLELLVEVRDAVELERALGAGATVIGVNNRNLESLVIDSGTVERI
                     LPLIPRDVVAIAESGMASRADVQRAARAGADAVLIGSAVSAVDDAGEMVRSFTGVVVE
                     RDARPN"
     gene            1276..1884
                     /gene="lexA"
                     /locus_tag="VLI40_13545"
     CDS             1276..1884
                     /gene="lexA"
                     /locus_tag="VLI40_13545"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: protein motif:HMM:TIGR00498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HSU98253.1"
                     /translation="MSLTKRQREILSYLAEYTEDNGYAPSFEEIAARFEYSSLATVHE
                     HLSNLERKSYIKRRYNESRGIEILPSDQYPRAVQVPLMGTVAAGMPIEAIQTHETIAV
                     PEDFVHRGGNHYVLRVRGNSMIEDHICDGDFVVVNERASCDNGETVIALIDGQSATVK
                     RFYRERDGRIRLQPRNDTMDPIYVHENDVAIQGIVVGVMRRC"
     gene            complement(1891..2934)
                     /gene="trpD"
                     /locus_tag="VLI40_13550"
     CDS             complement(1891..2934)
                     /gene="trpD"
                     /locus_tag="VLI40_13550"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HSU98254.1"
                     /translation="MTTTPTPAPLQAAIAALAHDRPLTQDAITAAFDVVMRGDASQVQ
                     IAALLTGLRVRGESADVVAGAASALRRAMIRLDLPQHDRIVDTCGTGGGAVGTFNIST
                     AAALVAAGAGVRIAKHGNRSFTSKSGSADVLEALGVNIDVDVDAMRRAYDSAGIVFMF
                     APRMHPAMRHVGPVRGELGIPTVMNIIGPLANPASVGRQVIGVADAARVTVIAEALAA
                     LGTVHSLVVHGAPGMDEISPLGPTRILEVRGGETTEWECDPESIGAGVAQPSELIGGT
                     PAENAELIRHCLAGKAPAGAIAAVVANAGAAVYLAGTADSLAAGVKKAKAAIADGSAT
                     AALERLRKALPRA"
     gene            complement(2948..3805)
                     /locus_tag="VLI40_13555"
     CDS             complement(2948..3805)
                     /locus_tag="VLI40_13555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98255.1"
                     /translation="MKSLPALAADLALAPDASAALRLVHEELSGGDRSTGFVLLTVDP
                     RRNALVNEQLATDTTPNGALPPYALLALDHLPPTVQYAVLAGQRFADVGDQGSQYARL
                     LGVEAGVGDFRLMLKGVVFEGALAAALALYDSGRRSSSKLLERAAPLAILFELAYARF
                     YERDARFEAVSALHDVTTRMRAEHASAVAGLEREVERLRAAQRAGTSDVVHKLRDAVG
                     VAERRAIAAEQRLVAVEGQVVNAVDRLERTHVQLHQQDATLRAQTDLIRQLEARLAEL
                     DRLAASTGS"
     gene            3933..4712
                     /gene="truA"
                     /locus_tag="VLI40_13560"
     CDS             3933..4712
                     /gene="truA"
                     /locus_tag="VLI40_13560"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HSU98256.1"
                     /translation="MRERTVQLVLQYDGSRFAGWQRQPATVTVQGAVEGVLERLFERR
                     VTVIGAGRTDAGVHARGQAAHVRVPETWNASKLRRALNSLLPHDVWIAQAHNVTDQFH
                     ARYSAASRRYTYQLGTDDESASPFRRRYEWRVPWQLRDESLLSSVAASLLGEHQFYGF
                     AVRGTAPETDQHRCTVSHAAWTRTDGRLDFTIEANRFLHHMVRFLVGTMVDIAAGRRT
                     PESFAELLSAPNNLAVSPPAPSHGLFLDRVSYPAHFYLEGV"
     gene            4709..5371
                     /locus_tag="VLI40_13565"
     CDS             4709..5371
                     /locus_tag="VLI40_13565"
                     /inference="COORDINATES: protein motif:HMM:NF013116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase family protein"
                     /protein_id="HSU98257.1"
                     /translation="MKIFVQSASVVEIKEWAAADLLDGVVLSPVDLAADDPSAAILDR
                     LAEITVDFGVPVCVPVSAISGADIYREARDIAHVSEHAIVQIPFVEDAVSPIRKLVGD
                     GVRVCATHVYSGAQAFIAAKLGASMVATDVREIDAQGRPSAEMVAEIRAVIDKCGLEC
                     DVAVTPPQSSTAFTNYLLAGADVAYVTPELFASLMVHSLTDRGVDRYLSALAKRHKPR
                     SM"
     gene            5375..>5655
                     /locus_tag="VLI40_13570"
     CDS             5375..>5655
                     /locus_tag="VLI40_13570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98258.1"
                     /translation="MKRMGVVAILVAAIACKGGSSKAQQVTIAQPAANAQVDASRRTA
                     ITAAVARVAPSVVTVQTEAVEHVPADMMEQFFGGNSAERPVAGLGSGFIL"
BASE COUNT         1023 a         1891 c         1793 g          948 t
ORIGIN      
        1 cacactgaaa cagttcctcc gcgtccccgg ccagcgtgcc atccactacc ggcaccaccg
       61 accacacctc atcgataccg atggtgcggg cagccatcac ggcccggggc gacgaatcgc
      121 catggagctg cgctaccgac agcggcaccg aggtgacgta gtgattcaac tcggtcgcgt
      181 gcggcgcccc gaacacgcca acgcggcgcg cggagccggc gtggcgcaga atcgaggcgg
      241 cttcgctgat cgtgcgattc cgcggaccgc cagcgaagat cacgcccacg tagtcgcagc
      301 cgagcgctac cgccgcatcg acgtccttgg cccgggtgag gccgcagaac ttaattcgga
      361 cgtgcatcgc gctccacaac cacgccggtg aacgaccgga ccatctcgcc tgcgtcgtcg
      421 acagccgaaa cagcggagcc gatcaacacg gcatcggcgc ccgcccgggc ggcgcgttgc
      481 acgtcggcgc gcgaggccat accgctctcc gcgatcgcta cgacgtcgcg cgggatgagc
      541 ggcaggattc gctcgaccgt tccgctgtcg attacgaggg attcgaggtt ccggttgttc
      601 acgccgatca ccgtcgcgcc ggcgccaagt gcgcgctcca gctcgacagc gtcgcgcact
      661 tcaaccagca gctccaatcc gatcgcactc cccgcctcga caagctcgga cagtgcggca
      721 tcggacagcg cgcggacaat gagcagcgcg gcagccgcac cgttggcccg cgcctcgtag
      781 agctgcaccg gtgcaacgat gaagtccttg cggagcaccg gaaccgacac accgctcgcg
      841 acgctccgca gatcggcaat cgacccgcca aacctgtccg gctcggtcag caccgagacc
      901 gctgccgcgc cggcgtcggc gtacgaccgc gctttcgaca acgcgtcgag acccggattt
      961 atagacccct tggacgggga ccgccgcttg acctcggcta tcacacccac cgtcggttga
     1021 agcagcgcct gacgcagcga tacggtggcc ggcgcggttt ccgccgccag cctgagggcg
     1081 tcatactggg gcagaagatc ggaagcacgg gagtgggacg cccgcaccag ctcgccgagc
     1141 gtgccagagg gaggggtcca gctactccgc ggtgcggaaa aagcttgcgt ttcgggcatt
     1201 cttcggataa cgtactgttt cggcggctgt tcggggtcag ccgtgcatgc agacccaccc
     1261 tctaggaatc tggcgatgtc gctgaccaag cgccaacggg aaattctcag ttatctcgct
     1321 gagtacacag aagataacgg ctacgcgccg agcttcgagg aaatcgcggc gcggttcgag
     1381 tacagctcgc tggcaacggt ccacgagcat ctgagcaatc tcgagcgcaa atcttacatc
     1441 aagcggcggt acaacgagag tcgcgggatc gagatcctcc cgtccgacca gtacccgcga
     1501 gctgtacagg tccccctgat gggaactgtc gccgccggca tgccgatcga ggcaatccag
     1561 acgcacgaga ccatcgcggt gccggaagat ttcgttcatc gcggcggcaa tcactacgtg
     1621 ctgcgcgtgc gcggaaactc gatgatcgaa gaccacatct gcgacggaga cttcgtggtg
     1681 gtcaacgagc gcgcctcatg cgacaacggt gagacggtga tcgccctcat cgacggtcag
     1741 tcggccaccg tcaagcgctt ctatcgtgag cgcgacggcc gcattcggct gcaaccgcgc
     1801 aatgacacaa tggatccgat ctacgttcac gagaacgacg tcgcgattca gggaatcgtc
     1861 gtcggcgtga tgcggcgctg ctagaaaggt ctacgcacgc ggtaacgctt ttcgcagtct
     1921 ttcgagggcc gctgtcgcag aaccgtctgc gatcgcggcc ttcgcttttt taacgcctgc
     1981 ggcgagcgaa tcggccgttc ccgcgaggta cactgccgcg ccggcattgg ccacgaccgc
     2041 ggcgatcgcc ccagcgggcg ctttaccggc gaggcagtgt cgtatgagct ctgcgttttc
     2101 ggcgggcgtt ccgccaatca gctccgacgg ctgcgcgacg cccgcgccga tcgattcagg
     2161 atcgcattcc cactcggtag tctcgccacc gcgaacttcg aggattcgcg tcgggcccag
     2221 tggcgagatc tcgtccatcc ctggcgcgcc atgcacaacg agcgagtgaa cggttccgag
     2281 tgccgcgagc gcttcggcaa tcacagtcac gcgcgccgca tccgccacgc caatcacctg
     2341 tcgtcccacc gatgccggat tcgccagtgg tccgatgatg ttcatcaccg ttggaatccc
     2401 gagctccccg cgcaccgggc ccacgtgtcg catcgccgga tgcatgcgcg gcgcaaacat
     2461 gaaaacgatg ccagcgctgt cgtacgcgcg acgcatcgca tcgacgtcga cgtctatgtt
     2521 gacgccgagc gcttccagaa catcggcgct accggacttc gatgtgaacg atcggttgcc
     2581 gtgcttcgcg atcctgacgc cggcacccgc tgcgaccagc gctgcagctg tcgagatgtt
     2641 gaaagtgcca accgccccgc cacccgttcc acacgtatcg actatacgat cgtgctgcgg
     2701 caggtccagc cgtatcatcg cgcgccgcaa tgcgctcgcg gcgccggcaa cgacgtccgc
     2761 gctttcgccg cgcacccgca atccagtcag aagtgcggct atctgcacct gcgacgcatc
     2821 gccgcgcatg acgacgtcga atgctgcggt gatcgcatcc tgtgtgagcg gacggtcgtg
     2881 cgcgagtgcg gctattgcgg cctgaagcgg ggccggagtc ggggtcgtcg tcatgcggga
     2941 taactactca ggagccagtg ctcgccgcca gcctgtccag ctcggcgagc cgggcctcca
     3001 gctgccggat gagatctgtc tgcgcgcgca gcgttgcatc ctgctgatgc agctgcacgt
     3061 gcgtccgctc cagccgatcg accgcgttca cgacctgtcc ttccactgcg acgagtcgtt
     3121 gctccgccgc gatcgcgcga cgctccgcga cgccgaccgc atcgcgcaac ttgtgaacga
     3181 cgtcgctcgt tcccgcacgc tgcgcggcgc gcagccgctc gacctcgcgc tcgaggccgg
     3241 ccaccgcgct cgcgtgctcg gcgcgcatgc gcgtcgtcac atcgtgcagc gcggacacgg
     3301 cctcgaaccg cgcatcccgc tcgtagaaac gagcgtaggc cagctcgaac aggatcgcga
     3361 gcggcgccgc gcgctccagc agcttggacg aggaccggcg gcccgaatcg tacagcgcca
     3421 gcgcggccgc cagcgcaccc tcgaacacca cacccttcag catgagccgg aagtcaccca
     3481 cgcccgcctc cacgccgagc agtcgagcgt actgagagcc ctgatcgccc acgtcggcga
     3541 acctctggcc ggcaagaacg gcgtactgca ctgtcggcgg aaggtgatcg agtgcgagca
     3601 atgcgtaggg cggaagcgcg ccgttgggcg tggtatcggt tgccagttgc tcgttgacca
     3661 gcgcgttgcg tcgcggatcg accgtgagca gcacgaagcc ggtgctccgg tctccgccgg
     3721 aaagctcttc gtggaccaat cggagcgctg cagaggcgtc cggggccaga gcaagatcag
     3781 ccgcgagcgc gggaagagat ttcacggaca tccgatgcag cgagtttgcg tcctaaatcg
     3841 tgacttgtca atgctttgcg ttgcatcagc accgatattt cctgcgccgg taattgcttg
     3901 acatcatcct ccgaccggat aacttccggc caatgcggga gcggaccgtg caactcgtgc
     3961 tgcagtacga cgggtcacgg ttcgccggat ggcagcgcca gccggcaacg gtgacggttc
     4021 agggtgctgt cgaaggcgta ctcgaacgct tgttcgaacg ccgagtaacg gtgattgggg
     4081 ctggacggac agacgcaggg gttcacgcgc gaggacaggc tgcgcacgtg cgagtgccgg
     4141 agacgtggaa cgcctccaaa cttcgccgag cgctcaactc gctgctccca catgacgtct
     4201 ggatcgcaca ggcgcacaac gttaccgatc aattccacgc ccgctacagc gccgcatcac
     4261 gacgatatac gtaccagttg gggacggacg acgagtccgc ctcaccattc cggcgcaggt
     4321 acgaatggcg cgtcccgtgg cagttgcgcg atgaatccct tctctccagc gtggctgcgt
     4381 cgctgctggg cgagcaccag ttctacggtt tcgcggtgcg cggtaccgcg cccgaaacgg
     4441 accagcaccg ctgcaccgtg agccatgccg cctggacacg aaccgacggg cggctcgact
     4501 tcacgatcga ggcgaaccga ttcttgcacc acatggtccg cttcctcgtt gggacaatgg
     4561 tcgacattgc ggccggtcgc agaacgccgg agtcgttcgc cgagttgctc agcgcaccga
     4621 acaatctcgc ggtctctccg ccggcaccat cgcacggtct gttcctcgac cgggtcagct
     4681 acccggcgca cttctatctt gagggcgtat gaagatcttc gttcagagcg cgtcagtcgt
     4741 agagatcaag gagtgggcgg cggcagacct gctcgacgga gtggtgctct caccggtgga
     4801 tctcgctgcc gacgatccgt ccgcggcgat tctggacaga ctcgccgaaa tcactgtcga
     4861 cttcggcgtt ccggtgtgcg tacctgtcag cgcgataagc ggcgcggaca tctaccgcga
     4921 agcacgcgac attgcgcacg tgtcggagca tgcgatcgta cagatcccgt tcgtcgagga
     4981 tgcggtgtcg cccattcgca agctcgtcgg cgacggcgtg agggtctgcg ccacgcatgt
     5041 ctattccggc gcgcaggcat tcattgccgc caagctcggc gcatcgatgg tcgcgaccga
     5101 cgtgcgtgag atcgacgccc agggtcgtcc cagcgcggag atggtggcgg agatacgcgc
     5161 tgtgatcgac aagtgcgggc tcgagtgcga cgttgcggta acaccaccgc agagctcgac
     5221 cgcattcact aactacctgc tggccggcgc ggacgtcgcg tacgtcactc cggagctgtt
     5281 cgcgtcgttg atggtccact cgctcaccga ccgtggcgtc gacagatacc tgagcgcgct
     5341 tgccaagcgt cacaagccga ggagcatgta ggcgatgaag cggatggggg tggttgcgat
     5401 cctcgtagcg gcgatcgcgt gcaagggcgg atcttccaag gcgcaacagg taacgatcgc
     5461 gcagccagca gcgaatgcgc aggtcgacgc gtcgcgccgg acggcgatca ccgccgcagt
     5521 tgcacgcgtt gcgcctagcg tggtgaccgt gcagaccgaa gcggtggagc acgtgccggc
     5581 cgacatgatg gagcagttct tcggcggcaa ctcggcagag cgtcccgttg ccggacttgg
     5641 ctccggtttc atact
//
LOCUS       DATIMD010000605         3391 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5459208, whole genome shotgun sequence.
ACCESSION   DATIMD010000605 DATIMD010000000
VERSION     DATIMD010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5459208"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VLI40_13575"
     CDS             <1..382
                     /locus_tag="VLI40_13575"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSU98259.1"
                     /translation="PNVRELESFFLNEAGYSVDFADDGIAALALARERRPAIIVTEIM
                     VPKLDGLALCRAVKQDPDLADTVVLVFSILAAHGRARDAGADAFLIKPLAEQRLVQTV
                     RELLERRSSMTPRTNSGTQPGRGR"
     gene            379..1794
                     /locus_tag="VLI40_13580"
     CDS             379..1794
                     /locus_tag="VLI40_13580"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HSU98260.1"
                     /translation="MSKAFAGRSSVTEDAVEFPRLSTGNPQADSILGGGFPANSINIV
                     MGQPGTGKTIFAEQLLFHNANGTRPLVYLTTLAEPMTKVVSYAQRLGFFDVERIGTTV
                     LYDDLGAELVANGPRALVPHVLEVIKRLSPSILVIDSFKAIHDLAESTPEMRRIISEL
                     AGVVSAYDMTVFLLGEYTQENIEEYPEFAVADSIVQLERNALGARDERYFRVLKLRGS
                     GYREGHHAFRITSTGLEIFPRLVTPTFETYTPLLERTSIGVDGLDAIMGGGVWRGSTT
                     LLIGPTGSGKSTVGLQFALEAHRRGEPALFVNFQENPSQVQRMIRALGTDPDRVYQAG
                     FYHLYTSPVELQIDSVIVEIFNFIETAGVRRVVIDAVGDLSTAASDPQRLHDFLYSLV
                     QHFVVRNVTTLLNLESALGATGGRDEQQRWSYMSDNVLLLERAEAGAAERTIRVIKTR
                     NSAHDPVPHGVEIRRDGLHVI"
     gene            1861..3147
                     /locus_tag="VLI40_13585"
     CDS             1861..3147
                     /locus_tag="VLI40_13585"
                     /inference="COORDINATES: protein motif:HMM:NF024883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU98261.1"
                     /translation="MKRAGRAEDLHQLTRVSREFTYARSLDDILDLAVEQAARLLESE
                     KAVLLLADDDGLLSVRAAIGVDSEVVERFRHPASEALVSRLRGLLGANIAGGFVGVPL
                     VSQGKVVGLLATVRPDGLPASDDDEWLLAALADQVAAPLENARLARQLASSALLADNV
                     RLYEAEREARIVAETALREAEAARDAALQADKSKTSFLAAMSHELRTPLNAIGGYVEL
                     LEMGLRGPITPEQADDLKRIKASQGHLLRLITEVLDYARLGSGHAQVSFDDVELNEVL
                     REAEMMTIPQARARGLEYVYTPLSCNVVVRADPYRLRQIVLNLLTNAIKFTEPGGAIR
                     MTCELVDATSGDERNVRISVQDTGRGIPPDQIDGIWQPFVQVGRKLNQPGEGVGLGLA
                     ISRDLSRRLGGELSAVSEPGHGSVFTLTLPVLRGGR"
     gene            complement(3130..>3391)
                     /locus_tag="VLI40_13590"
     CDS             complement(3130..>3391)
                     /locus_tag="VLI40_13590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98262.1"
                     /translation="ECGLASSHEDDSADDARDYSVDYYVRLLRTTYAQRLARAFTPLD
                     FTTVFADADQFSIFEPPIESVRTVLTTSTATSMLSPGSPTAT"
BASE COUNT          659 a          972 c         1083 g          677 t
ORIGIN      
        1 cccgaatgtg cgcgaactgg aatcgttctt tttgaacgaa gccggctact cagtcgactt
       61 tgccgatgat ggcatcgccg ccctcgcgct cgcgcgcgag cgtcggccag ccatcatcgt
      121 gaccgagatc atggttccaa agctggatgg actggcattg tgccgcgccg tcaagcagga
      181 tcccgacctc gcggatacgg tcgtgctggt gttcagcatt ctcgcagcgc acgggcgcgc
      241 acgcgatgct ggtgctgacg cgttcctgat caagccactg gccgagcaga ggctggtgca
      301 aaccgttcgt gaactgttgg agcggcggtc ttcaatgact ccgcgtacta attcaggaac
      361 gcaaccgggc cggggccgat gagcaaagcg tttgcgggtc gatcgagtgt caccgaggat
      421 gcggtcgagt tcccgcgcct cagtactggc aatccacagg ccgattctat tctgggcggc
      481 ggcttccccg cgaattccat caacatcgtc atgggccagc ctggtaccgg gaagacgatc
      541 tttgccgagc agttgctgtt tcacaacgca aatggaacca ggccgctagt gtatctcacc
      601 acgcttgcgg agccgatgac aaaggttgtg agctacgcac agcgactggg cttcttcgat
      661 gtggaacgga tcggcaccac ggtgctttac gatgatcttg gggcggagct ggttgccaac
      721 gggccgcgcg cgctggtgcc gcatgtactg gaggtaatca agcgactatc gccttctatc
      781 cttgtgatcg attcattcaa ggcgatacac gatctggcgg aatcgacgcc tgagatgcgg
      841 cgtatcatct cggagctcgc cggagtcgtt tcggcctacg acatgaccgt gtttctcctg
      901 ggcgaataca cccaggagaa catcgaggaa tatcctgaat tcgcggtggc ggattcgata
      961 gttcaactcg agcgcaacgc gctcggagct cgcgacgagc ggtactttcg cgtgttgaag
     1021 ttgcggggaa gcggctatcg tgagggccac cacgccttcc gcatcaccag tactggcctc
     1081 gagatatttc cgcggctggt gacgccgacg ttcgagacgt atacaccgct gctggagcgg
     1141 actagcatcg gcgtcgacgg cctggatgcc atcatgggcg ggggtgtctg gcgtggtagc
     1201 accacccttc tgatcggtcc aaccggttca ggtaaatcga cggtcggcct gcagtttgcg
     1261 cttgaagcac atcggcgtgg cgagcctgcg ctttttgtga acttccagga aaatccttcg
     1321 caggtgcagc gtatgattcg agcgctgggc accgatccgg accgtgtgta ccaggctggc
     1381 ttttatcacc tctatacctc gcctgtcgag ctgcagatcg atagcgtcat cgtcgagatc
     1441 ttcaacttca tcgagacggc gggcgtgcgg cgtgtcgtga tcgatgcggt cggcgatctc
     1501 tcgactgcag cgagcgatcc tcagcgtctg cacgactttc tgtattctct cgttcagcac
     1561 ttcgttgtcc ggaatgtcac cacactgctc aaccttgagt cagcgctagg cgccactggc
     1621 gggagagacg agcagcaacg gtggagctac atgtccgata acgtgttgct gctggaacgc
     1681 gccgaagccg gcgctgcaga gcgaacaata cgggtgatca agacgcgcaa tagcgcccac
     1741 gaccccgtgc cccacggtgt ggagatccgg cgtgacggcc tccacgtcat ttgactttgt
     1801 gaatgagtgc gcgtatcacg ctgcggcgcg cccctgattc ctccaggcat gattgacgac
     1861 atgaagcgcg caggccgcgc cgaggacctt catcagctca cgcgggtcag ccgtgagttc
     1921 acgtatgctc gatcgcttga tgacattctc gatctggccg tcgagcaggc ggcgcgtctt
     1981 ctggagtccg agaaggcagt gctgttgctg gccgatgacg acggtcttct cagcgtgcgc
     2041 gcggcgatcg gagtggactc ggaggtcgtc gagcgcttca ggcatccggc aagtgaggca
     2101 ctggtgagtc ggctgcgtgg actgctcggg gccaatatcg ctggcggctt cgtaggcgtt
     2161 ccgctggtgt cacagggaaa ggtggtcgga cttctggcca cggtgcggcc ggacggcctg
     2221 ccagcgtcgg acgatgacga gtggctacta gctgcgcttg cggaccaggt cgccgcaccg
     2281 ctcgaaaatg cgcgactggc gaggcagctt gcgagctccg ctctgctcgc cgacaacgtg
     2341 cgtctttacg aagcagaacg tgaggcacgc atcgttgcag agactgcact tcgcgaggcg
     2401 gaggccgcac gcgatgcggc cttgcaggcg gataagagca agacgtcgtt tctcgctgcg
     2461 atgagccacg aattgcgtac acccttgaac gcaattggcg gttacgtcga gctgctggag
     2521 atggggttgc ggggaccaat cactccggaa caggcagacg acctcaaacg catcaaggcg
     2581 agtcagggac atttactgcg tctgataaca gaggtactcg attacgcacg gttgggatcg
     2641 ggccacgcac aagtgagctt cgacgatgtc gagttgaacg aagtcctgcg agaggcggag
     2701 atgatgacca taccacaggc tcgggcgcga ggtctggagt acgtatacac gccgctcagc
     2761 tgcaatgtcg tcgtccgcgc cgatccatac cgactacggc agatcgtcct caatcttctc
     2821 actaatgcca tcaagtttac agaaccgggt ggtgcgatac gtatgacgtg cgagcttgtg
     2881 gacgcgacct cgggcgacga aaggaatgtc cgcatttccg tacaggatac cgggcggggc
     2941 ataccaccgg atcaaatcga cggcatctgg caaccgttcg tacaggtcgg acggaagctg
     3001 aatcagcccg gcgagggcgt cgggctcgga ctggcgatca gccgggatct ctctcggcga
     3061 ctcggcggcg agctgagcgc ggttagcgaa ccgggccacg gatcggtgtt cacgctcacc
     3121 ctgccggtgc tacgtggcgg tcggtgatcc cggagaaagc atcgacgtcg cggtgctcgt
     3181 agtgagaact gtgcggactg attcgatcgg cggctcgaag atcgagaact gatccgcatc
     3241 cgcaaacacg gtcgtaaaat ccagcggcgt aaatgctcgc gccaggcgct gtgcgtatgt
     3301 agtgcgcagc agccgaacgt aataatccac ggaatagtcg cgcgcgtcgt cagcgctgtc
     3361 atcctcgtgc gaagaagcca ggccgcactc g
//
LOCUS       DATIMD010000606         2135 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4879486, whole genome shotgun sequence.
ACCESSION   DATIMD010000606 DATIMD010000000
VERSION     DATIMD010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4879486"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..734)
                     /locus_tag="VLI40_13595"
     CDS             complement(<1..734)
                     /locus_tag="VLI40_13595"
                     /inference="COORDINATES: protein motif:HMM:NF017932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M90 family metallopeptidase"
                     /protein_id="HSU98263.1"
                     /translation="MVFGLGTKRRRERLRAQPVPQAWRAIVERNLPVFHRLPPADQSE
                     LLGHMQVFLAEKHFEGSGGLEMTDEIRVTIAAQACMLLLHRETDYYPELTSIIVYPSG
                     YTAYEQHPIGGWIWEEGGQDRLGHTARELRAMVLAWDAVKQGAADPTDGRNLVLHEFA
                     HQLDFENLVADGTPELQTRGAYIAWARVMSAELLLLRQADDEGLPTVLDTYGATNPAE
                     FFAVATEAFFEQPLALQTRHPELFSEL"
     gene            complement(775..1932)
                     /locus_tag="VLI40_13600"
     CDS             complement(775..1932)
                     /locus_tag="VLI40_13600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P1 family peptidase"
                     /protein_id="HSU98264.1"
                     /translation="MLAICLAALTVTGLLNAQEPRARARALGVAPGIFAPGKQNAITD
                     VAGVLVGQSTVTAGDSVHTGVTAILPHSGNMFFDRVPAAVFVGNAFGKLVGATQLKEL
                     GELETPILLTCTLCVWRAADALTAELLSMPGMENVKSINPVVGETNDGTLNAIRSRPI
                     SPEDVHHALASANGGPVAEGSVGAGAGTIVFEWKGGIGTSSRMLPATLGGWTVGVLVQ
                     TNFGGVLQVMGAPVGRELGKYAYRNDVEHERGDGSVMIVVATDAPLSDRNLERLAARA
                     MMGIARTGSSASNGSGDYVIAFSTADGVRRRLVQSAGRSQNYKPVLRSTEEVSNDDMS
                     PLFEAVIESTEEAVYNSMFMATSVTSKGRTIEAIPLDRVREILAKYNVGKR"
BASE COUNT          399 a          682 c          642 g          412 t
ORIGIN      
        1 agctcactga aaagctcggg gtggcgggtc tgcaaggcca gtggctgctc gaagaaggcc
       61 tctgtagcaa ccgcgaagaa ctccgcgggg ttcgtggctc cgtacgtgtc cagaacggtc
      121 ggaagcccct catcgtccgc ctggcgcaac agcagtagct ctgcgctcat tacacgggcc
      181 catgcgatgt aggcccctct ggtctggagc tccggcgttc cgtcggcgac gaggttctcg
      241 aagtccagct gatgggcgaa ttcgtgaaga acgagatttc ttccgtcggt cggatcagcc
      301 gcgccctgct tcacggcgtc ccaggcgagc accatcgcgc gcaactccct cgccgtgtgg
      361 ccgagccggt cctggccgcc ttcctcccag atccagccgc cgatgggatg ttgctcgtag
      421 gcggtgtacc cggatggata aacgattatc gacgtcagct cgggatagta gtcggtctcg
      481 cgatgcagca ggagcatgca tgcctgcgcg gcaatcgtga cgcgaatctc atccgtcatc
      541 tcgaggccgc cgctcccctc gaagtgcttc tcggcgagga agacctgcat gtgaccgagg
      601 agctcactct gatccgcggg cggaagccgg tgaaatacgg ggagattccg ctcgacgatg
      661 gcgcgccagg cttgcggaac gggctgcgcc cgaagacgct cacgccggcg cttcgttccg
      721 aggccaaaga ccatgctgca agttaaccat ggagcggtgt gggccaggtg cgcgctatct
      781 ctttccgacg ttgtacttcg cgaggatctc gcgcacacgg tccagcggta tcgcctcgat
      841 ggttcttccc ttgctggtta ccgatgtcgc catgaacatc gagttgtaga ccgcttcctc
      901 ggtggattcg atcacggctt cgaacagcgg cgacatgtcg tcgttcgata cctcctcggt
      961 actccgcaac acgggtttgt aattctgcga tcttccagcc gactgaacca gtcggcggcg
     1021 cacaccgtcg gcggtggaga acgcgattac gtagtcaccc gatccgttcg atgcactgga
     1081 gccggtgcgc gcaattccca tcattgcgcg cgcggcaagg cgctccaggt ttcgatccga
     1141 aagcggcgca tcggtcgcga cgacgatcat aaccgagcca tcgccgcgct catgctcgac
     1201 gtcgttcctg taagcgtatt tcccgagctc gcgaccgact ggcgcgccca tcacctggag
     1261 cacgccaccg aagttggtct gcaccagtac accgaccgtc caaccgccga gcgtcgccgg
     1321 aagcatgcgt gacgaagtgc cgatgccacc cttccattcg aacacgatcg ttcccgcacc
     1381 cgcgccgacg ctgccttccg caaccggtcc gccattggca gaagcaagtg cgtgatgcac
     1441 gtcttccgga gatatcgggc gcgaccggat tgcgttcaac gttccatcgt tcgtttcgcc
     1501 aacgacagga ttgatggact tcacgttctc catgcctggc atgctcagca gctccgcggt
     1561 aagcgcatct gccgcgcgcc agacacagag cgtacacgtc agcaatatcg gagtctccag
     1621 ctcgcccagc tccttgagct gcgtagcacc aacgagtttg ccgaacgcat ttccgacgaa
     1681 cacggctgcc ggaactcgat cgaaaaacat gttgcctgaa tgcggaagaa tggccgtcac
     1741 gccggtgtgc acggaatctc cggccgttac cgtcgactgt ccgacaagga cgcccgcgac
     1801 gtcggtaata gcgttctgct tacccggcgc gaagatgccc ggtgcgacgc caagcgcgcg
     1861 cgcacgagct cgcggctcct gcgcgttgag caggccggta actgtcagcg ctgcaaggca
     1921 gatcgctagc actccgctgt tcggattggt tgggcgcata ggtgtggaaa gtttgggtga
     1981 ccaatcatac cacgcgcccg acgcgaacga catctctgcc cgttgacagc ggatctcatg
     2041 tgagcggcta gaaattcgca acccagtgca tgtagtaagt cttcgccgga gcgacagggg
     2101 cgccattcgc cggtgtcgct tcctgatagt cgagc
//
LOCUS       DATIMD010000607         6066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_254227, whole genome shotgun sequence.
ACCESSION   DATIMD010000607 DATIMD010000000
VERSION     DATIMD010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6066
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254227"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..430
                     /locus_tag="VLI40_13605"
     CDS             <1..430
                     /locus_tag="VLI40_13605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98265.1"
                     /translation="NGFSSSNSWFPDQQLSVTILTNSGAAKAGALMAQVSRAALGVPL
                     LQPHRRVAIPPAMLAHYAGVYALKLGDTVRDFTFFVRNDTLYAQLAGQGANALIPYGD
                     NKFGASFDPDAIVTFVIVNGKATKVILDQNGRTSQGLRKQ"
     gene            complement(470..1348)
                     /locus_tag="VLI40_13610"
     CDS             complement(470..1348)
                     /locus_tag="VLI40_13610"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HSU98266.1"
                     /translation="MSRPLRLQFPGALYHITSRGDGREPIYLDDSDRGEFLAIVALVC
                     ERYHWSCHSYCLMTNHYHLLIETQAATLSRGMRQLNGVYTQRFNRAHARVGHVYQGRY
                     SAVLVQRERHLLEVLRYIVLNPVRAGMVSAASEWSWSSYRAAIGLVPSPPWLLTDGLA
                     AIFGSGAEGRREFTRFVDDGVGVPSCWRNLKGQIYLGDSTFISDAQACIAADASGLSE
                     VPEVQKHRRHASSERWEEHYSVYRNMADRDRAIVDAFMSGGGTMRAIGEHFGIHYSRV
                     SRIVSNAETARARGKT"
     gene            complement(1471..1620)
                     /locus_tag="VLI40_13615"
     CDS             complement(1471..1620)
                     /locus_tag="VLI40_13615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98267.1"
                     /translation="MERRSRATLHFLVAAMGATETTELKYLIQRTVPVFLNDMDRAHT
                     LRQKF"
     gene            complement(1662..2309)
                     /locus_tag="VLI40_13620"
     CDS             complement(1662..2309)
                     /locus_tag="VLI40_13620"
                     /inference="COORDINATES: protein motif:HMM:NF025013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4142 domain-containing protein"
                     /protein_id="HSU98268.1"
                     /translation="MVRGTISSARSSARSGAFAVALCAVAMLGACKKGNSATDTTAAA
                     TGATDTSMAAGTGSSTSMKAPATAMTDAQIFAMLAAANQGEIDAGKTASTKATNASVK
                     SFARDMVTAHTKMLNDGNALAKKLNITPDTTAADSIKAMNQSTAATLSAAAKGAAFDS
                     AYVNSQVAGHQYVLDMIKRAEGQAQNAQLKSALTSAEPQVQQHLDRIKDIQSKLK"
     gene            complement(2391..2966)
                     /locus_tag="VLI40_13625"
     CDS             complement(2391..2966)
                     /locus_tag="VLI40_13625"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSU98269.1"
                     /translation="MSAIARNDAGSAVERLAGTWKIDPAHSGIEFVVTHLMISKVRGR
                     FTDIAGTVVTDGTPEGSRVEAEIGAASITTNDVGRDTHLRSADFFDVEKFPKIRFVST
                     AVKADGSDEFVVTGDLTIRGVTRSIDMKVTSEGSTRDPWGNDRAGFSGSARIDRRDFG
                     LTWNQALEAGGVMVSNEVKLTVDVELTHVPQ"
     gene            3093..3458
                     /locus_tag="VLI40_13630"
     CDS             3093..3458
                     /locus_tag="VLI40_13630"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HSU98270.1"
                     /translation="MSQESVCPRYHKAIELIGRRWTGAIISAMLAGKTRYHEIRENVP
                     EISDRMLAERLRELETEGVVERKVFPTTPVRIEYELTDKGRALEAAIVAISTWATEWI
                     DPVEMTAAAPAVPSGADGH"
     gene            3536..4876
                     /locus_tag="VLI40_13635"
     CDS             3536..4876
                     /locus_tag="VLI40_13635"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU98271.1"
                     /translation="MTAPVPAPAPAAPPAHHRPSIGRALSSRNYRLFFSGQSVSLVGT
                     WITRIATSWLVYRLTGSAFLLGVVGFCSQIPTLVLTPFSGVLIDRWNRHTVLVVTQVL
                     SMLQSLALAVLAFAGVITVTEILILQLVQGSINAFDTPARQAFVVEMVEDRSYLSNAI
                     ALNSTMVNASRIVGPSIGGMIIALAGEGWCFMLDAISYIAVIASLLAMHVTRAEREPI
                     TTHVLEEFRTGLQYIKGSLPIRTALILLAIVSTMSMPYTVLMPAIATQTLHGGAHTLG
                     FLMTASGVGALIGALYLASRLSVIGLEDVSAMATVTFGLGLIGFALSRQLWLSLAILP
                     IVGAGFMVQMASINTIIQTIVDERLRGRVMAFYVMAFLGTAPIGSLLAGAVAARIGSE
                     YTILFGGAASVAAGIWFASRLPKLRAVIHPIYETRGIITSPLNPRPQAASETTH"
     gene            complement(4921..5862)
                     /locus_tag="VLI40_13640"
     CDS             complement(4921..5862)
                     /locus_tag="VLI40_13640"
                     /inference="COORDINATES: protein motif:HMM:NF017262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HSU98272.1"
                     /translation="MLTPHALLQAAEIHITASDLATDYAGFLAYFGVFGALGFRWLVL
                     RHTEARQPEIGAIGSPVALSLQAAEIGAARIGLIGAFFMLLNLLMALSARASDKGISF
                     GSAIAAGGLRTAVAFLFIAVFLVSFAAAVKRVRAAWTIAAIVGIIYALQNITSGRWAS
                     LVNPLHEVAASLWIGTLFVVVVAGLPAILRSTLSSERRGALVADLINDFSPVAIGASL
                     LLVITGITTAWRHLKFLAALWTTPYGYALDIKLVLVATVVVLGAWNWRRMRPRLGAEQ
                     AAHDIRRSAKAELFVASLVLVMTGILVSLPSPRLPHP"
BASE COUNT         1177 a         1908 c         1788 g         1193 t
ORIGIN      
        1 caacggcttc agctcgtcca actcatggtt ccccgaccag cagctatcgg ttaccatcct
       61 cacgaattcc ggcgcggcga aagccggcgc gctgatggca caggtatcgc gcgctgcact
      121 gggcgttcca ctgttgcaac cgcatcggcg cgtcgccata ccaccggcga tgcttgcgca
      181 ttatgcggga gtgtacgcgt tgaagctcgg tgacaccgtg cgcgacttca ctttcttcgt
      241 acgaaatgat actctgtatg cgcagttggc cggtcagggt gcgaacgcac tgatccccta
      301 cggcgacaac aagttcggtg cgtcgttcga tcctgacgca atcgtcacct ttgtaatcgt
      361 taacgggaag gcaacgaagg tgatattgga tcagaacggc agaacctcgc aaggtttacg
      421 gaagcagtag cgcaatgcgg gcgcgcacgg attgcggcgg attgcggggt caggtcttgc
      481 cccgtgcgcg cgctgtctct gcattactca cgatccggct cacgcgcgag taatggatac
      541 cgaagtgttc gccaatcgcg cgcatggtac cgccgccact catgaacgca tcaacgatcg
      601 cgcggtcccg atccgccatg ttgcggtaca cggaataatg ctcctcccat cgctcgctcg
      661 acgcatgacg gcgatgtttc tgcacctccg gcacttcact gagcccactt gcgtcggcgg
      721 cgatgcatgc ctgtgcatct gaaatgaaag tcgaatctcc gagatagatc tgacccttga
      781 gattccgcca gcaggatggg acgccgacgc catcgtccac gaaacgcgtg aactcgcgcc
      841 ttccctccgc gccgctgcca aagatcgctg cgagtccgtc ggtcagcagc cacggcggcg
      901 acggtacaag accgatggca gcgcgatagc tgctccacga ccattcgctt gcagcagaca
      961 ccatccccgc acgcactgga ttcaacacga tgtatcgcag cacctcgagc agatgccgct
     1021 ctcgctgcac gaggaccgcc gagtagcgtc cctgatacac gtggcccaca cgtgcatgtg
     1081 cgcgattgaa ccgctgtgtg tatacgccgt tcagttgtcg catgccgcgg gaaagagtgg
     1141 ccgcctgcgt ttctatcagt agatgatagt ggttggtcat gagacagtag ctatgacacg
     1201 accaatggta ccgttcgcag acaagcgcaa cgatcgcgag gaactcgccc ctgtcgctgt
     1261 catcgaggta gatcggctct cggccgtctc cgcgtgacgt gatgtgatag agcgcaccgg
     1321 gaaattgaag acgcaatggt ctggacatga ccattacaat gtcaccgact gctggcgatg
     1381 tgcgcggcga tatccacgcg cggtgtagcg aaaggctgca acgaccggct acggcgcacg
     1441 gggcaagacc tgaccccgca cgaacacctc tcagaacttc tgcctgagtg tgtgtgcgcg
     1501 gtccatgtcg ttcagaaaaa ccggtaccgt tctctgaatc agatacttca gctctgtcgt
     1561 ctctgtcgcg cccatggcgg cgaccagaaa gtggagcgtc gcgcgagagc gacgctccac
     1621 tccgtccaga aatacgcgat ctatgtcgcg cccgcgaggt tctatttcag cttgctctga
     1681 atatccttga ttcggtccag gtgctgctga acctgcggct ccgccgacgt cagagctgac
     1741 ttcagttgtg cgttctgcgc ctgcccttcc gcgcgcttga tcatgtcgag cacgtactgg
     1801 tgccccgcta cctgcgagtt gacgtacgcc gaatcgaacg cagcaccctt cgccgcggcc
     1861 gacagcgttg cagccgtcga ttgattcatt gccttgatgg agtcggcggc agtcgtgtcc
     1921 ggcgtgatgt tcagcttctt ggccagcgcg ttgccgtcgt tcagcatctt ggtgtgcgcc
     1981 gtcaccatgt cgcgcgcgaa tgacttgacc gatgcattgg tcgccttggt cgacgcagtc
     2041 ttgcctgcgt cgatctcgcc ctggttggct gccgccagca tcgcgaagat ctgtgcgtcc
     2101 gtcatggcgg tggcgggcgc tttcatcgag gtgctcgatc ccgttccggc agccatcgac
     2161 gtgtcggtag cgccagtcgc ggccgcggtc gtatcggtcg cgctattccc cttcttgcat
     2221 gctccgagca tcgccaccgc gcagagcgcg accgcgaatg cgccacttcg tgcgctgctc
     2281 cgtgcgctgc ttatcgtccc acgtaccatg attgccacct ctccagttcg ctgtgtgccg
     2341 tattggcccg gcgaaccgga gaggggcaaa atccgtgcta cataccggcg ctactgcggc
     2401 acatgcgtga gctcgacgtc tactgtcagc ttcacctcgt tggacaccat cacgccgcct
     2461 gcctccagcg cctggttcca ggtgagtcca aagtcgcgcc ggtcgatcct ggcgctcccg
     2521 ctgaagccgg ccctgtcgtt accccatggg tcccgcgtcg aaccctcgct cgtgaccttc
     2581 atgtcgatcg atcgggtcac accgcgaatg gtcagatccc cggtcaccac aaactcgtcg
     2641 ctaccgtccg ccttcacggc agtgctgacg aaccggatct tgggaaactt ctccacgtca
     2701 aagaaatccg ccgatcgaag atgcgtgtct cggcccacgt cattggtcgt aatgctggcc
     2761 gcgccgatct ccgcctcgac ccgggatccc tcaggcgtcc cgtcggtcac gacggtgccc
     2821 gcaatgtccg taaaccgccc ccgaaccttc gatatcatca ggtgcgtcac gacaaactcg
     2881 atccccgaat gggcaggatc gatcttccac gtaccagcca ggcgctccac tgcggatccg
     2941 gcgtcatttc ttgcgatagc agacatcaaa ggtctccgac aaagggatga aaacagtcca
     3001 gtcgatagag tcaggcaagt aactctagat aagttactat atttatgtaa gtaactattg
     3061 tcaatacccg catccccatt tacatacact atatgagcca ggaatcggtt tgccccaggt
     3121 atcacaaggc gatcgagctg attggtcgcc gctggacggg cgcgatcatc agcgcaatgc
     3181 tcgccggcaa aaccagatat cacgagatca gggaaaacgt ccccgagatc agcgatcgca
     3241 tgctggccga gcgcctgcgc gagctcgaga ctgaaggtgt ggtcgaacga aaggtgtttc
     3301 ccaccacgcc ggtgcgcatc gaatacgagc tgaccgacaa gggtcgcgcc ctcgaagcgg
     3361 cgattgtcgc aatcagcacc tgggccaccg aatggatcga ccctgtcgag atgacggctg
     3421 cggcaccagc ggtcccttcg ggagctgacg ggcactgagt cgggggccat cccgcagtag
     3481 tcgcggaaag ccgccgcggc gtgctccttg aataaccgaa ctgcggcatg aaaagatgac
     3541 cgcacccgtc cccgccccag caccagcagc accacccgct caccaccggc ccagcatcgg
     3601 ccgcgcactc agcagccgca actaccgcct gttcttcagc ggccagagtg tatcgctcgt
     3661 cggcacctgg atcacgagaa tcgcgacgag ctggctggta taccggctca ccggctcggc
     3721 gtttctgctc ggtgtcgtcg gcttctgcag tcagataccc acgcttgtcc tcacaccgtt
     3781 cagtggcgtc ctgatcgaca gatggaaccg tcatacggtg ctggtggtga cgcaggttct
     3841 gtcgatgctg cagtcactcg cgctcgcggt tcttgcattt gccggggtga tcaccgttac
     3901 ggagatcctg attctccagc tcgtacaggg gagcataaac gcattcgaca ctcccgcccg
     3961 tcaggctttc gttgtggaga tggtggagga tcgcagctat ctctccaacg cgatcgcgct
     4021 caactcgacg atggtgaacg caagtcgcat cgttggccct tccatcggcg gaatgatcat
     4081 cgcgctggcg ggtgagggct ggtgcttcat gctcgacgcg atctcctaca tcgcggtgat
     4141 cgcatcgctg ctggcgatgc acgtgacacg cgcagagcgt gaaccgataa cgacgcatgt
     4201 tctggaggag tttcgcacgg gactgcagta catcaagggc tcgctgccga ttcgcaccgc
     4261 gctgatactg ctcgcgatcg tgagcacgat gagcatgccg tacaccgtgc tcatgccagc
     4321 catcgcgacc cagacactgc acggtggtgc gcacacactg ggctttctca tgacggcgtc
     4381 gggtgtgggc gcgctcatcg gcgcgttata cctcgcgtct cggctgtccg taataggact
     4441 ggaagatgtc agtgccatgg cgaccgtcac gttcgggctc ggcctcattg gatttgcgct
     4501 gtcgcgccag ctatggctgt cgctcgcgat actgccgatc gtcggcgccg gattcatggt
     4561 gcagatggcg tccatcaaca cgataatcca gaccattgtt gacgagcgtc ttcgcgggcg
     4621 cgtcatggcg ttctacgtaa tggcgttcct gggcaccgcg ccgatcggca gcttgctcgc
     4681 gggcgcggtc gccgcgcgaa tcggatcgga gtacacgatc ctgttcggcg gcgcagcttc
     4741 ggtcgcggcc ggaatatggt tcgcgtcgcg gcttccaaag ctgcgcgcgg tcatacaccc
     4801 gatctacgag acgcgcggga taatcacttc accactgaac cccaggccgc aagcggcgag
     4861 cgaaacgact cactgacgat tcattcctga attgtcttgc gaaatcgccg tgcgatcgcg
     4921 ctacggatgt ggcaggcgcg gtgatggcag gcttacgagt attcccgtca tgacgagcac
     4981 gagtgatgcg acgaacagct ctgccttcgc gctccggcgt atatcatgcg cggcctgctc
     5041 cgcacccaga cgcgggcgca tgcgtcgcca gttccacgcg cccagtacga cgactgttgc
     5101 aacgagtaca agcttgatgt cgagtgcgta gccgtagggc gtggtccaca acgccgcgag
     5161 aaatttgagg tgacgccacg cggtcgtgat acccgtgatc acgagcagca acgacgctcc
     5221 gatggcaacg ggcgagaagt cattgatgag atccgcgacc agcgcgcccc gccgctcgga
     5281 cgagagcgtg ctgcgaagaa tcgcgggaag tcctgccact acgaccacga acagcgtgcc
     5341 gatccacaac gatgcggcta cttcgtgcag cggattgacg agtgacgccc atctgcccga
     5401 cgtgatgttc tgcaacgcgt atatgatgcc gacaatcgcc gcgatggtcc aggcggcacg
     5461 cacgcgcttg accgccgctg caaacgacac gagaaacacg gcgatgaaca ggaatgccac
     5521 cgcagtccgc aagccgccgg ccgcgatcgc gctcccaaag gatattccct tgtcggaggc
     5581 tctggctgaa agagccatca gcagattgag cagcatgaaa aacgcgccga tcaggcctat
     5641 gcgcgcggcg ccgatctccg ccgcctgcag cgaaagcgca acgggactgc cgatcgcgcc
     5701 gatttccggc tggcgcgcct cggtgtgacg gagcacgagc catcggaagc ccagggcgcc
     5761 gaatacgcca aagtatgcga ggaagccggc gtaatcggtc gcgagatccg aggctgttat
     5821 gtggatttcg gcggcctgta gaagagcatg gggagtcagc atagcaagct tacggttggg
     5881 ctcgggaaga tgttggtgtg ccagcgtcgt ccatgggtcg ttcatgggcc gcccgcagat
     5941 atcacctgcg aatgtcacct gctacacatg gctgaagcta tcgctcctaa acagctgtcg
     6001 cccgcgtccc gcgcactgta gcttctctcg gacggacggt cgcaggtacg acctcctgaa
     6061 gaaaat
//
LOCUS       DATIMD010000608         2720 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1417105, whole genome shotgun sequence.
ACCESSION   DATIMD010000608 DATIMD010000000
VERSION     DATIMD010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2720)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2720)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2720
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1417105"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1450
                     /locus_tag="VLI40_13645"
     CDS             <1..1450
                     /locus_tag="VLI40_13645"
                     /inference="COORDINATES: protein motif:HMM:TIGR01893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HSU98273.1"
                     /translation="MAEILNRLEPTSLWRHFESLSAIPRASGNEEGARQYVLAQAARL
                     GLEAISDSVGNIVVRKPARPGRESAVPAVLQGHLDMVCEKNEGTAHNFDTDPIRLVID
                     GDWLKADGTTLGADNGVGAAAALAVMGSDDVAHGPLEFLFTVDEETGLTGASEFPAGL
                     LHARYLLNLDGEEEGTLCIGCAGGLNTVARREVAWQAAGSGDAWRIKVAGLQGGHSGI
                     DIHRGRGNAIRILGRLLQTLMRKIPVAISAIEGGSKRNAIPREASATIIVERAYEADL
                     REVVGAIETAVRSELGAFEAGLRITLERAERPERVIGESDAAALASLLASQHHGVIDM
                     SPDIPGLVQTSTNLATLAVKGEVVEIATTQRSAIASSKLAAGAMVTSVFRMAGYEVEH
                     TGGYPGWKPEPGSDIVKLAKSVHNEVLGVAPELAAMHAGLECGVIGEKYPGMQMIAFG
                     PHIVDVHSPSEKIRISSVPHFWKFLTALLERV"
     gene            complement(1576..1746)
                     /locus_tag="VLI40_13650"
     CDS             complement(1576..1746)
                     /locus_tag="VLI40_13650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98274.1"
                     /translation="MRDPETIETELMEISAITDDVVKLERIIAWCAIHPDEVPFALHQ
                     LMGRNDAKARAE"
     gene            complement(1762..>2720)
                     /locus_tag="VLI40_13655"
     CDS             complement(1762..>2720)
                     /locus_tag="VLI40_13655"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSU98275.1"
                     /translation="IPGVSSVTLAIMPLLDDNEWDSTISVEGYSAKEGEWVDPHMQFI
                     SPGYFQTLQTPVIMGRDINDRDDKGAPPVALVNERFAKRYFADRNPVGLHVGMGGNPG
                     TKTDIEIVGVVKDTKYESMREEVPYELYRPYRQVEFVQGMTVYARAQGDPKDIFVAMR
                     RAVNELDSNVPIYRMRTMEQQLDKSLMSERLLASLSSVFGILATLLAALGLYGVMAYM
                     VARRTREIGIRMALGASRGSVVWLVMREVLLLSAMGVAIGGAGAYAATRLVQKQLFGI
                     MPTDTVTMALAAIGIASVALLSGYLPARRATGIDPMRALRWE"
BASE COUNT          524 a          917 c          814 g          465 t
ORIGIN      
        1 catggccgaa atactgaatc gtctcgagcc cacgtcgttg tggcggcatt ttgaatccct
       61 ctccgcgatc ccgcgcgcgt caggcaacga agagggcgcg cgccaatatg tcctcgccca
      121 agccgcacga ctgggattgg aggccatcag cgactcagtc ggcaacatcg tggtgcgcaa
      181 acccgcgcgg ccggggcgcg agtccgccgt gcccgccgtc ttgcagggcc acctcgacat
      241 ggtatgcgag aagaatgaag gcaccgcgca caacttcgac accgacccca ttcgtctcgt
      301 cattgatggc gactggctga aggccgatgg caccacgctc ggcgccgaca acggcgtggg
      361 cgcggccgcc gcgctggcag taatgggcag cgacgacgtg gctcacgggc cgttggaatt
      421 cctcttcacg gtcgacgaag agaccggact gaccggcgca tcggaattcc ccgcggggtt
      481 gctgcacgcg cgctaccttc tgaatctcga tggcgaagag gaaggcacgc tgtgcatcgg
      541 ctgcgcgggt gggttgaata ctgtcgcgcg tcgcgaggtc gcctggcagg ccgcgggcag
      601 cggcgacgcg tggcgcatca aagtcgcggg attgcagggc ggccactcgg gcatcgacat
      661 ccatcgcgga cgcggcaacg cgatccgcat cctgggacgg ctgctgcaga cgctcatgcg
      721 caaaattccc gtcgcgatca gcgcgatcga aggcggcagc aagcgcaatg cgattccgcg
      781 cgaggcctcg gccaccatca tcgtggaacg tgcttacgag gctgatctcc gcgaggtcgt
      841 gggcgcgatc gagaccgcgg tgcgcagcga attgggggcc ttcgaggcgg ggctccgtat
      901 cacgttggaa cgcgcagaac gcccggaaag ggtcatcggc gaaagtgacg cagccgcact
      961 cgcaagcctg ctcgcctccc aacatcacgg cgtcatcgac atgagtcccg acatccctgg
     1021 gctcgtgcaa acctcaacga atctcgccac gctcgcggtg aagggcgagg ttgtggagat
     1081 tgcgaccacc cagcgcagcg ccatcgcgag cagtaaactc gcggcgggcg cgatggtcac
     1141 aagcgtattc cgcatggccg gctacgaagt cgagcacacc ggcggctatc ccggctggaa
     1201 gccggagccg ggaagtgaca tcgttaagct tgccaagtcg gtgcacaacg aagtgctggg
     1261 cgtggcgccg gaactcgccg ccatgcacgc gggcctcgaa tgcggcgtca tcggcgaaaa
     1321 gtatccgggc atgcagatga tcgccttcgg acctcacatc gtggacgtgc atagccccag
     1381 cgaaaaaatc aggatttcgt cagtcccgca cttctggaag ttcctgaccg cgctcctaga
     1441 gcgagtctga cccgatcgct actcgatacc cgtcagagcc gcgaccgtga gggagcgccg
     1501 agcgcctccc gactcggctc gacgctccct gaccgtcgcg gctctgatcg aaacgcgaat
     1561 tggccaattt ccagcctatt ccgcgcgagc cttcgcgtcg ttccgcccca tcaactgatg
     1621 caaggcaaac ggcacttcgt cgggatgaat cgcacaccag gcgataattc gctcgagctt
     1681 cacgacatca tcagtaatgg cgctgatctc catcagctcg gtctcaatcg tctccgggtc
     1741 gcgcatagca ccagcatgac actactccca gcggagtgcg cgcattgggt cgatgcccgt
     1801 cgcccgccgc gccggcaggt accccgacaa gagcgcgaca ctggcaattc caatcgccgc
     1861 gagcgccatc gtcaccgtat ctgtcggcat gattccgaag agctgcttct gcactagccg
     1921 cgtcgccgca tatgcgcccg ccccgccgat cgcgactccc atcgcggaga gcagcagcac
     1981 ctcgcgcatc accagccaca ccacggaccc gcgactcgct cccagagcca tgcgaatgcc
     2041 aatctcgcgc gttcgccgcg ccaccatgta cgccatcacg ccatacagtc cgagagccgc
     2101 cagcaacgtc gcaaggatgc cgaacaccga cgagagcgat gccagcagcc gctcgctcat
     2161 cagcgatttg tcgagttgct gttccatcgt gcgcatccgg tagatcggca cgttggaatc
     2221 gagctcgttc accgcgcggc gcatcgcgac aaatatatcc ttcggatcgc cctgggcgcg
     2281 cgcatagacg gtcatgccct gcacgaactc cacttggcga taggggcggt aaagctcgta
     2341 cggaacctcc tcgcgcatgc tctcgtactt cgtgtccttc accacaccga caatctcaat
     2401 atcggtcttc gtccccgggt ttccgcccat ccccacatgc agccccaccg gattgcggtc
     2461 tgcgaaatag cgcttcgcga aacgctcgtt gaccaacgcc actggcggcg cccctttgtc
     2521 atcgcggtcg ttgatatcgc gccccatgat caccggtgtc tgcagcgtct ggaagtagcc
     2581 cggcgagatg aattgcatat gcgggtccac ccactcacct tccttcgccg agtagccttc
     2641 cacgctgatc gtgctgtccc actcgttgtc gtcaagcagc ggcatgatcg cgagtgtcac
     2701 gctggagacg ccgggaatac
//
LOCUS       DATIMD010000609         2176 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3725057, whole genome shotgun sequence.
ACCESSION   DATIMD010000609 DATIMD010000000
VERSION     DATIMD010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3725057"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1353
                     /gene="rimO"
                     /locus_tag="VLI40_13660"
     CDS             <1..1353
                     /gene="rimO"
                     /locus_tag="VLI40_13660"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HSU98276.1"
                     /translation="VDSERYLAQLAAYGGEMTNDLGAAEVIIVNTCGFIDAAKKESLD
                     ALVEAGEYKTSGVCTTVVAVGCMVERHKGELEEALPEVDLFLGASETDRLIEELASRG
                     VLSGDPMLEHPGVRLYSGDLPHVRYLKVSEGCDHGCAFCAIPLMRGKHRSFAPEEVVA
                     EAQLLEMQGAREINLVAQDLAHYGRDIRDRKVRLPDVLQMLVDQTTIPWIRMLYLYAT
                     GITPQLLDIVAREPRIMPYIDMPIQHASDTVLERMRRPERARTIRANVARFREAVPRV
                     AIRTTCIVGFPGETEDDFEQLLGFLEDVQFERVGVFSYSPQEGTRAAELEDDVPESVK
                     RDRLERVSDLQRMITAERYEARLGTPVQALVDRIDDVTGLAVARLPWQADDIDGVTFL
                     DEKYAPGTLLEVIPREVVDDYDFSAETIRVISTPAGDIRASLRRQLPLVSTTIGSFGR
                     "
     gene            1350..>2176
                     /locus_tag="VLI40_13665"
     CDS             1350..>2176
                     /locus_tag="VLI40_13665"
                     /inference="COORDINATES: protein motif:HMM:NF020075.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIID/LytB domain-containing protein"
                     /protein_id="HSU98277.1"
                     /translation="MSLARLMSVKSTLVFAMVFLGACAGGTHRPVVAPEPVAAARTEP
                     RSNLPPLNLPADSSRRVDTAALQVADVPVTVLPTIIGHRSSAGQGDARPAGGVSRADN
                     DQTVRIALALGRRSARIYATGDWSVYDGPSGKALATLHSGDSFTVQARDGMLVSDGSA
                     IPSVRGPLIARATDADAFVGFDAHRYRGEIGIAIANDGVSVINRVAMEDYLRGVVPLE
                     IGTDRTVTESAAVEAQAIAARSFAYTRMDDSRPYDMLATVTDQVYGGVDAERPLSDAA
                     "
BASE COUNT          386 a          663 c          745 g          382 t
ORIGIN      
        1 gtcgattcgg aacgctacct cgcacagctc gctgcatacg gcggcgagat gacgaacgac
       61 ctcggcgccg ccgaggtgat catcgtgaat acgtgtggct tcatcgatgc cgcaaagaag
      121 gaatcgcttg acgcgctggt cgaggccggc gagtacaaga cgagcggtgt gtgcaccact
      181 gtcgtagcgg tgggatgcat ggtggagcgc cacaagggag agctggagga ggctctcccg
      241 gaagtcgatc tgtttcttgg cgcgtcggaa acggatcggt tgatagagga gctcgcgagc
      301 cgcggcgttc tgtcgggcga tccgatgctc gaacatccgg gagtgcgact gtacagcggc
      361 gatctgccgc acgtgcgcta cctcaaggtg agcgaggggt gcgatcacgg atgcgcattc
      421 tgcgcgattc ccctgatgcg cggcaagcac cgctcgtttg caccggaaga agtggtggcc
      481 gaagcgcagc tgctggagat gcagggcgca cgcgagatca atctcgtcgc gcaggatctg
      541 gcgcactacg gccgcgacat tcgcgatcgc aaggtgcggc tgccggatgt gctgcagatg
      601 ctggtcgatc agacgacgat accatggatc cggatgttgt atctctacgc caccggaatc
      661 acgccgcagc tgctcgatat cgtagcgcgc gagccgcgca tcatgccgta catcgacatg
      721 cccatccagc acgcgtcgga tacggtcctc gagcgcatgc ggcgccccga gcgcgcacga
      781 accatccgcg cgaacgtcgc gcgctttcgc gaagccgttc cccgcgtcgc gatccgcacg
      841 acgtgcatcg tcggctttcc cggcgagacc gaggacgact tcgagcagct gctggggttc
      901 ctggaggacg tacagttcga gcgcgtgggt gtcttcagct actcaccgca ggaagggact
      961 cgcgcagcgg agctggaaga tgacgtgccg gaatccgtca agcgcgaccg gctggagcgc
     1021 gtctccgatc tgcagcgaat gattactgca gagcgctacg aagctcggct cggcacaccc
     1081 gtccaggcac tggtcgaccg gatcgacgac gtcaccgggc tcgcggtagc ccgactgcca
     1141 tggcaggcgg atgacataga cggcgtgacc tttctggacg agaagtacgc tccaggcacg
     1201 ttgctcgagg taattccacg tgaagtggtg gacgattacg acttcagcgc ggagacgatt
     1261 cgagtgatca gcacgccggc gggcgatatc cgtgcctcgc tccggcgaca actgccactc
     1321 gtgtccacga ctatcggaag tttcggacgg tgagcctcgc gcgtcttatg agcgtgaaat
     1381 cgacgctcgt attcgcgatg gtattcctcg gtgcgtgcgc tggcggaacg catcgtcccg
     1441 tagttgcgcc ggagccggtt gcggcagcgc gcaccgagcc acgcagcaat cttccgccgc
     1501 tgaatcttcc ggccgattcg tcgcgccggg tcgatacggc ggcgctgcag gtggccgacg
     1561 tgccggtgac tgtacttccg acaatcatcg gccacaggtc ctcggcgggg cagggcgatg
     1621 ctcgacccgc cggcggggtt tcgcgcgcgg acaacgatca gacggtccgc atcgcgctgg
     1681 ccctcgggcg gcgctcggcg cgcatctacg caaccggaga ctggagcgtg tacgacgggc
     1741 ctagcgggaa ggcgcttgcg acgctgcatt caggcgacag cttcaccgtg caggcgcgcg
     1801 atggaatgct cgtgtccgat gggagtgcga ttccttccgt gcgcggtccc ctgattgcgc
     1861 gcgcaaccga tgcggacgcg ttcgtcggat tcgacgcgca ccgttatcgt ggcgagatcg
     1921 gtatcgcgat cgccaacgac ggtgtgtcgg tgatcaatcg cgtcgccatg gaggattatc
     1981 tgcgcggtgt cgtgccgctg gagatcggca ccgatcgaac cgtgaccgag agcgcagcgg
     2041 tcgaggcgca ggcgatcgcg gcgcgcagct ttgcatatac gcgcatggac gactcgcgcc
     2101 cttacgacat gctggcgaca gtcacggatc aggtctacgg cggcgtggat gcggagcgtc
     2161 cgctgtccga cgccgc
//
LOCUS       DATIMD010000610         1873 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5749705, whole genome shotgun sequence.
ACCESSION   DATIMD010000610 DATIMD010000000
VERSION     DATIMD010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1873
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5749705"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..215)
                     /locus_tag="VLI40_13670"
     CDS             complement(<1..215)
                     /locus_tag="VLI40_13670"
                     /inference="COORDINATES: protein motif:HMM:NF013499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HSU98278.1"
                     /translation="MRVRGWVAHLRSSGKVAFIVIRDGSGTLQCVVVQKVVGDAAWAT
                     FQSLTLETSLEIDGEVRADARAPGGVEV"
     gene            341..1840
                     /locus_tag="VLI40_13675"
     CDS             341..1840
                     /locus_tag="VLI40_13675"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSU98279.1"
                     /translation="MPALTLRRRLAIGTVGIALVLALPLVVAVRSLERVHKTTLDLRN
                     GAFAASLLIGTLRQGTDDLRRAEDALVYVGTPETRDRMARQIATMRTLADSLDSFSLK
                     SASVNVRLALDSLTVLTNEEYERSSASKHDAAEVISTQWVRPRFAVIEQTIRSAEQVL
                     RERSRDSVNAATDDTAAAERAAISAMIIAILLAGLISLWLIRSITRPVFDLETGMHAV
                     ARGDFTRKLSVRPNRKDEFGRLSESYEAMANRLAQLDRLKAEFVSVASHELKTPINVI
                     LGYVELLEDGIYGKLQDQQREVCETIAAQARNLTRLVRRLLDVSRFEAGGGALECRQL
                     NLARFLDTLQSSFSVLAMQRSVQFQVERSEDLPAEVRWDEDRMSEVVGNLLSNAFKFT
                     PRGGKVELSAAAQDDHIVIEVRDTGAGIPPEQLPRIFQKFYQADNQAKASAKGTGLGL
                     AIAKEIVEAHGGSIAATSIAGHGATFRITMPVASDLRRSGQFPAHAIAS"
BASE COUNT          379 a          557 c          592 g          345 t
ORIGIN      
        1 acctcgacgc cacccggcgc ccgcgcgtcg gcacgaactt cgccgtcgat ctcgagcgac
       61 gtttccaggg tcagtgactg aaaggtcgcc caggctgcgt cgccgactac tttctgaaca
      121 acaacgcatt gcagggtgcc acttccgtca cgtatgacga tgaaggcaac tttccctgag
      181 gatcgtagat gagctaccca gccgcgtaca cgcaccgttt caccaatgtg gtgaggcagg
      241 ctggaaatcg tttgatactg ggatgacatt tgggcgttcg agagagtcgt gggcagccga
      301 atagaatacc gaaccttctg gagcgaggca actacgagtg atgcctgcgc ttacgcttcg
      361 acgccgactt gcgataggca cggtcggcat cgcgctggta ctggcgcttc cgctggtcgt
      421 cgcggtgcgc tcactggagc gcgtacacaa gacgaccctt gatctgcgca atggcgcgtt
      481 cgctgcgtcg ttgttgattg gcaccctgcg tcaggggacc gacgatctcc gccgcgccga
      541 agacgcgctc gtctacgttg gcacaccgga gacgcgcgac cgcatggcgc gccagatcgc
      601 gaccatgcgc acgctggccg attcgctgga cagcttttcg ctcaagtcgg cctcggtcaa
      661 cgtccggctc gcgctcgatt cgcttaccgt gctcacgaat gaagagtacg agagatcgag
      721 cgcgtccaag cacgatgccg cggaagtcat ctccactcag tgggtgcgcc cgcgcttcgc
      781 ggtcatcgag cagacgataa gatccgcgga gcaggtgctg cgggaacggt cgcgcgacag
      841 cgtaaatgcg gcaactgacg acaccgctgc ggccgagcgt gcagcgatca gcgcaatgat
      901 aatcgcgata ctgctggccg gtctcatcag tctgtggctg ataagatcga tcacgcggcc
      961 ggtgttcgat ctcgagacgg gtatgcacgc ggtcgcgcga ggagatttta cgcgcaagct
     1021 ctccgtgcgg ccaaacagaa aggatgaatt cggacgactc tccgaaagct acgaagcgat
     1081 ggccaaccgc ctggcgcagc tcgatcggct gaaggccgaa ttcgtttcag tcgcgtcgca
     1141 cgagctcaag acaccgatca acgtcatact cggctacgtc gagctgctcg aggacggcat
     1201 ctacggcaag ctgcaggatc agcagcgcga agtgtgcgag acgatcgcgg cgcaggcgcg
     1261 caatctgacg cgcctggttc gcaggctact cgacgtgagc cgctttgaag ccggcggcgg
     1321 cgcgctggaa tgccggcaac tcaatcttgc gcgattcctc gacacgcttc aatcgtcgtt
     1381 cagcgtgctc gcgatgcagc gcagtgtgca gttccaggtg gagagatccg aagatctgcc
     1441 tgcggaagtc cgctgggacg aggaccggat gagcgaggtc gtggggaacc ttctgtccaa
     1501 cgccttcaag ttcacccctc ggggcggcaa ggtcgagctg tccgcggcgg cgcaggacga
     1561 ccacatcgtg atagaggtaa gagataccgg tgcgggaatt ccgcctgaac agctaccgcg
     1621 tatctttcag aagttctacc aggctgacaa tcaggcaaag gcatctgcaa agggcaccgg
     1681 gttggggctt gccattgcca aggagattgt cgaagcacac ggaggaagca ttgcggcaac
     1741 cagcatcgcg ggccacggcg cgacgttccg gattacaatg cctgtagcgt ccgaccttcg
     1801 caggagcggt cagtttccgg ctcacgcgat agcttcgtga tcaagggccg cgtttacgcg
     1861 atcgcgttcg cta
//
LOCUS       DATIMD010000611         5088 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4010934, whole genome shotgun sequence.
ACCESSION   DATIMD010000611 DATIMD010000000
VERSION     DATIMD010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5088
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4010934"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..474)
                     /locus_tag="VLI40_13680"
     CDS             complement(<1..474)
                     /locus_tag="VLI40_13680"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HSU98280.1"
                     /translation="MIASRAAMALFQTLVLDSPGHSRHLEGAPALAVILVVLGLIAAF
                     VIRFFKVRRHARLATQAKGAAEAELRTLFAAMQDIVFVVDRNGNYTRVPTTNANVPYR
                     PTPDLVGRNVSDVLPADAATTICNVSAQVVDTQRTIQTELKIQAEGRSVWFAATAS"
     gene            complement(504..1136)
                     /locus_tag="VLI40_13685"
     CDS             complement(504..1136)
                     /locus_tag="VLI40_13685"
                     /inference="COORDINATES: protein motif:HMM:TIGR00481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HSU98281.1"
                     /translation="MKARMVPAVAIASVLVTLVAPAAQAQQAPPPPSTEVGASLLALA
                     NLPARTGATLTVTSPAFTNGGDIPFENTSYRGNIFPGLKWSPGPAGTKSYAVIMQDGD
                     AMSHGAPILHWTMVNIPATTTQLDAAMSQPPAGAEYGPNIRGPAHAYMGPHTPPGPKH
                     RYHLQVFALDDTIPAAALVDYAGLTAAMKGHVLASGEVIGLGQAPPTSTP"
     gene            1417..2511
                     /locus_tag="VLI40_13690"
     CDS             1417..2511
                     /locus_tag="VLI40_13690"
                     /inference="COORDINATES: protein motif:HMM:NF012907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 18 protein"
                     /protein_id="HSU98282.1"
                     /translation="MRALPRIRHTLAVTLTVIAPQFIAPQFAAPASAQPVPRADRLFY
                     YVDREASWDSFVKHVDQIGIVGPQSFSVDSLGVVFGEVDPALIKLAAQHGVKVMPLVV
                     NENFNQVELHKLLVDSTARMRAIDALVALCQRDRYWGIQFDIEDVSIADKDRFTNWYQ
                     AASHALRGAGFHISIAVVPRAGDLAGPTAYNRWMFDSWRGGYDLAALGNASDFVSWMT
                     YDEHTRRTPPGPVAGLPWMTASVDYALRFIPAGKLSLGVPLYGTHWFVQADPLSPLRA
                     GVSGASVSNAWGVHIMERAGGRIQWDDVQKVSYGSAMVGDINEWVYLDDARSFAAQTD
                     LARAKKLRGFSAWVLGTEDARIWDALPAGQ"
     gene            complement(2562..2864)
                     /locus_tag="VLI40_13695"
     CDS             complement(2562..2864)
                     /locus_tag="VLI40_13695"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSU98283.1"
                     /translation="MAYFFFRVNTPRPSFAIDMTSAERQIMMDHIAYWTALAEQRSAI
                     AFGPVADPKGAWGMGLVDVPDMETAQELSANDPVIMSQLGFSTDILPMQHLTLRPC"
     gene            complement(3033..3560)
                     /locus_tag="VLI40_13700"
     CDS             complement(3033..3560)
                     /locus_tag="VLI40_13700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98284.1"
                     /translation="MPASEIFLIDMALGYLAAALVIVTYVWPRLKVMDRVDAHRAIAT
                     FNSFRFFGLVFLLPGFVGPHLPATWAATAAYGDLATSVLAIAALLTVRQRFLFWPLVW
                     AFNLVGIADLVIDTVGAVNINLPSMAGQLGAGYAIPMLYVPALFWMHIVAFRLLLRPA
                     HARIPTADASVVLAR"
     gene            3706..4059
                     /locus_tag="VLI40_13705"
     CDS             3706..4059
                     /locus_tag="VLI40_13705"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSU98285.1"
                     /translation="MARKYDLKCPVAGTLDVIGDRWAILILRDLFRYDARRFQDFEAA
                     LPGLTPSVLSARLKSLESDGVVATRTYELHPPRLEYFLTPKGRELGPILRAMKSWGEK
                     HARGGQVVGVTNKRP"
     gene            complement(4174..4629)
                     /locus_tag="VLI40_13710"
     CDS             complement(4174..4629)
                     /locus_tag="VLI40_13710"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HSU98286.1"
                     /translation="MPPHTMLKGTSFHAQRRIVAAPEVVFRALTTPRGIAGWWTHLVT
                     GAFTERGVIRLEFDGMDEHIDLRQDALQPNRLVEWTCLEHSSLPEWRETTMRFMLEPS
                     DANATDLNFEHDGLSPELKCYNDCRRGWDHFLHSLSDFAERGSGSPFRR"
     gene            complement(4639..5004)
                     /locus_tag="VLI40_13715"
     CDS             complement(4639..5004)
                     /locus_tag="VLI40_13715"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSU98287.1"
                     /translation="MPNSHVQQIVADYHRGWVAGDADRITGLLSPEVVVEVPVNAYPT
                     REAFVAAVIAFSNMVTRVTMLDRFVNESTALHLYDMDVKGLGPLRVAEHFTVEGGAIT
                     RIRQIHDTHPVRLAGFVQA"
BASE COUNT         1050 a         1523 c         1575 g          940 t
ORIGIN      
        1 cgacgccgtt gcagcgaacc agacggaccg tccctctgcc tggatcttta actcggtctg
       61 gatagttcgc tgcgtgtcga cgacctgcgc ggaaacgttg cagatcgttg tcgcagcatc
      121 cgccggaaga acgtcgctca cattgcgccc gacgagatcg ggagtggggc ggtacgggac
      181 gttcgcgttc gtggttggaa cgcgcgtgta gtttccgttc cgatccacga cgaacacgat
      241 gtcctgcatt gccgcgaaga gcgtcctgag ctccgcctca gccgcaccct tcgcttgcgt
      301 cgccagtctg gcgtgacgcc tgaccttgaa gaacctgatg acgaacgccg caatcaggcc
      361 aagcacaacc agaatgaccg cgagcgcagg cgctccttcg aggtgcctcg aatggccggg
      421 actatcgaga accagagtct ggaacagcgc catggcggcg cgggacgcaa tcatgaccgc
      481 ggatgtatca ggctagatcg atatcaaggt gtggacgtcg gcggtgcctg gccaagcccg
      541 atgacttctc cgctcgccag cacgtgaccc ttcatcgccg ctgtcaggcc tgcgtagtcc
      601 acgagagctg ccgccggaat cgtgtcgtcg agcgcgaaaa cctgaagatg atagcggtgc
      661 ttgggccctg gcggtgtatg ggggcccatg tacgcatgcg ctggaccgcg aatattggga
      721 ccgtactctg cacccgctgg cggctggctc atcgccgcgt cgagctgagt tgtcgttgcg
      781 ggaatgttca ccatggtcca gtgaagtatc ggcgctccgt gtgacatcgc atcgccgtcc
      841 tgcattatca cggcatatga ttttgtccca gcgggacccg gcgaccactt gaggccagga
      901 aagatgttcc cgcgatacga cgtgttctcg aacggaatgt cgccaccgtt tgtgaatgca
      961 ggactggtca ccgtgagcgt ggcaccggtt ctggcgggaa gattggcgag tgccagcagc
     1021 gatgcgccga cttcagtcga tggcggaggc ggagcttgtt gcgcctgtgc cgccggggcg
     1081 acaagggtaa cgagtacact cgcgatggcg acagctggga ccatgcgtgc tttcatcgac
     1141 cgactcccct tcccggatgg tttgacagat ggcctgtgaa caccgacgac tcacaacatc
     1201 ttcccgtaaa cgataaaccc tgatcggaag gcaacgccac cggaattgcc acaggtagaa
     1261 cttgcgcaat ccatgcgtga gttgcaaccg tctggcaaaa cccgcacgga gcgcagtacg
     1321 aattcgaagt gattcagtcg agtttcacag cctgactggc cgactggact gcaaggagtg
     1381 tactttctcg cgcctggctc ataccgacag gatcacatgc gcgctcttcc acgtatcagg
     1441 cacactcttg ctgtaacgct caccgtcatc gcgccgcaat tcatcgcgcc gcaattcgcc
     1501 gcgcccgcgt ccgctcagcc ggttccgcgt gccgaccgcc tgttctacta tgtcgatcgc
     1561 gaggcaagct gggatagctt cgtgaaacat gttgaccaga tcggcatcgt cggtccgcag
     1621 tcgttctccg tggacagcct gggagtggtc ttcggagagg tggatccggc gctgatcaaa
     1681 cttgcggcgc agcacggcgt gaaagtcatg ccgctcgtgg tcaacgagaa cttcaatcag
     1741 gtcgagctgc acaaactgct cgtcgattcc acggcacgaa tgcgcgcgat cgacgcattg
     1801 gtggcgctgt gtcagcggga cagatactgg ggcattcagt tcgacatcga agacgtgagc
     1861 atagccgaca aggaccgatt cacgaactgg tatcaggcag cgtcacacgc gctgcgcgga
     1921 gccggattcc acatcagtat cgccgtcgtt ccgcgtgcag gtgatcttgc cgggccgacc
     1981 gcgtacaacc gctggatgtt cgacagctgg cgtggcgggt acgatctcgc cgcactcggc
     2041 aacgcttccg acttcgtatc gtggatgacg tacgacgaac acacgcgccg cactccgccg
     2101 ggtcccgtcg ccggcctgcc gtggatgacc gcgtcggtcg actacgcgct gcgattcatc
     2161 cccgcaggta agctgtcact cggcgtgccg ctctacggca cccactggtt cgtgcaggcc
     2221 gacccgctat cgccgctgcg cgcgggcgtg agcggcgcga gtgtgagcaa cgcgtgggga
     2281 gtgcatatca tggagcgcgc aggcggcagg attcagtggg acgacgtgca gaaggtgtcc
     2341 tacggatccg cgatggtggg cgacatcaac gagtgggtgt acctcgacga cgcgcgctcc
     2401 ttcgccgcgc agaccgatct agcgcgggcg aagaagctgc gcggattctc ggcgtgggtg
     2461 ttggggaccg aggacgccag aatatgggac gcgctgccgg cgggacagta ggccgcgtga
     2521 atggatgaat ggatgccgta gctggtgcgc attgcccgcc atcaacatgg ccgcagcgtg
     2581 agatgttgca tgggcaggat gtcagtcgaa aatccaagct gcgacatgat taccggatca
     2641 ttcgccgaca actcctgtgc ggtctccatg tcaggcacat cgacaaggcc catcccccac
     2701 gcgcccttcg gatcggcgac aggcccgaac gcgatcgcgc ttcgctgttc agcaagtgct
     2761 gtccagtagg cgatgtgatc catcatgatc tgacgctcag cggaagtcat gtcaatcgcg
     2821 aacgacgggc gcggtgtgtt gacccgaaag aagaagtatg ccatctcgca gtcagtgaag
     2881 gtctcgcgca gctttgacag gcgtccgggc gaaaatgctt tctgttccgt cttcagctac
     2941 gaccggcccg cagtcccaca gaaggggcgc cgactaatat agcgaccagc cgcgcgacga
     3001 cgtccgacgc cggaaacgga gcgttcgctg aatcagcggg cgagcaccac cgatgcgtcg
     3061 gccgtcggaa tccttgcatg tgcaggtcgc agcagaagcc ggaaagcgac aatgtgcatc
     3121 cagaacaacg cggggacgta aagcattgga atcgcataac cggccccgag ttgaccggcc
     3181 atggagggca gatttatgtt gaccgcacca accgtgtcaa tcacaagatc ggcaatgccg
     3241 acaaggttga acgcccagac cagcggccag aacagaaaac gctggcgcac cgtaagcagc
     3301 gcggcgatcg cgagcacgct ggtggcgagg tcgccatacg ccgccgtcgc ggcccaggtc
     3361 gcaggaagat gtggtccaac aaagccgggc agaaggaaga ccaggccgaa gaaacgaaaa
     3421 ctgttgaacg tggcgatggc gcggtgtgcg tccacgcggt ccatcacctt caatcgtggc
     3481 cagacgtagg tcacgatgac gagcgccgcg gcgagatagc caagcgccat gtctatcaga
     3541 aaaatctcac ttgcaggcat gtctaacccc tcgtagtctc tggtttcgta gtctctggtt
     3601 cagtgactat gtaaatacta gctactagct aatcactagt gtcggatata atttgtcaag
     3661 tggaagctgt cgatgagaag caaaccgcct ttatggagga ccgggatggc caggaagtac
     3721 gacctcaaat gccccgttgc aggcacgctc gatgtcatag gcgaccgatg ggcgatcctg
     3781 atcctgcgcg acctgttccg gtacgacgcg cggcgctttc aggatttcga ggccgcgcta
     3841 ccgggcctca cgccgagcgt gctctcggcg cgcctgaaga gcctcgagag cgatggagtc
     3901 gttgcaacgc gcacgtatga gctgcaccca ccgcgactcg agtactttct gacgccgaaa
     3961 ggccgagagc tcgggccgat tcttcgggcg atgaagagct ggggtgagaa gcacgcgcga
     4021 ggcggccagg tcgtcggcgt aaccaacaaa cgcccgtagc aggccgaaat ccccaacccg
     4081 taactagcgg gtgccagacg aggaccacga tacgcgcggc gttatcgttg cgtcatcgtc
     4141 gatccacttc ctccgttggg caaaccagca cggtcatctg cgaaatggcg aacccgagcc
     4201 gcgctcagcg aagtcagata gactgtgaag gaagtggtcc cagccacgac ggcagtcgtt
     4261 gtagcacttc agttccggcg acagtccatc gtgctcgaag ttcaaatccg tggcgttcgc
     4321 gtcagacggt tcgagcatga agcgcatcgt ggtctctcgc cattccggca acgacgaatg
     4381 ctcgagacac gtccactcga caaggcgatt cggttggagc gcatcctgac gcagatcgat
     4441 gtgctcgtcc attccgtcga actcgagccg gatgacccct cgctcggtga acgcaccagt
     4501 cacaagatgc gtccaccaac cggcgattcc gcgcggggtc gtcagggcgc ggaacacaac
     4561 ctcgggcgcg gccacgatcc ggcgctgcgc gtgaaagctc gtccctttca acatggtgtg
     4621 cggcggcatg cgttcctcct atgcttggac gaagccggcg agccgaaccg gatgcgtatc
     4681 gtggatctgc cggatgcgcg tgatcgcgcc tccctcgacg gtgaaatgct cggcgacgcg
     4741 aagcgggccg aggcccttca catccatatc gtaaagatgc aacgctgtcg attcgttgac
     4801 gaaccgatcc agcatcgtga cacgtgtgac catgttcgag aaggcgatga ctgcggcaac
     4861 gaacgcctcg cgcgtcgggt acgcattcac tggcacttcc accacaactt ccggggatag
     4921 caggccggtg atcctgtcgg cgtcgccagc cacccatcca cggtgataat ccgctacgat
     4981 ctgctgcaca tgtgagtttg gcatgcctga ttatacaagc gcccacttgt acaagtcaac
     5041 ggttgaattt ccatgaacgg gcagcgatac ttgatgcaac gggaggcg
//
LOCUS       DATIMD010000612         3093 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5465345, whole genome shotgun sequence.
ACCESSION   DATIMD010000612 DATIMD010000000
VERSION     DATIMD010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3093
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5465345"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            128..628
                     /locus_tag="VLI40_13720"
     CDS             128..628
                     /locus_tag="VLI40_13720"
                     /inference="COORDINATES: protein motif:HMM:NF017262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HSU98288.1"
                     /translation="MPATYYAVVTIHVLTALFWLGGMFFLAVIGAPLLRSVEPPELRQ
                     RLFREMGLRFRSAGWIAISILVVTGVINLYYRGWLHWDGVWASSAFWHSGVGHSLACK
                     LIAVTAMIVVSTIHDFILGPAAGRQKPGSPSAIAFRRHAAHLARANAALGIIIVIAAV
                     RLARGV"
     gene            640..1782
                     /locus_tag="VLI40_13725"
     CDS             640..1782
                     /locus_tag="VLI40_13725"
                     /inference="COORDINATES: protein motif:HMM:TIGR04053.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR04053 family radical SAM/SPASM
                     domain-containing protein"
                     /protein_id="HSU98289.1"
                     /translation="MPDSVPAHSPTRPSIRDADFNESPFIVIWETTQACDLACLHCRA
                     SAQPNRDSGELDTAEAKRLMDTVRQFGKPLFVLTGGDPLKRDDTIELVQYGTSIGLRM
                     AMTPSGTPLMTPDVLRDLRDAGLARLAVSLDGSSAAIHDRFRGVSGSFEWTVRMLEAA
                     RELGLSTQINTTVSSHNLHDVEPIVQLIATLGIALWSVFFIVPTGRARASDLTTADEF
                     ERVFHRLYDLSGTAPFDIKTTAAPHYRRVVLQRQVAERRSGDHSGPATPLTAGVGFSL
                     ADGVGRARGVNDGNGFLFVSHRGDIYPSGFLPVSAGNVRTHDLVDVYRSSPLFRDLRN
                     TDKLEGKCGVCEYRTICGGSRARAYATSGNYLASDPYCSYIPARAR"
     gene            complement(1779..2303)
                     /locus_tag="VLI40_13730"
     CDS             complement(1779..2303)
                     /locus_tag="VLI40_13730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98290.1"
                     /translation="MPTLTWPYVHLLINHFPIVLVTMGLVAALGALLLRRRGLWLYAM
                     GTLTVAGLSIYPVHFTGDQADHALHDPWYIARGAIDAHDNAAGTALIIILVTGVVAAY
                     GWWRAVHRRDEIIPVWIRALVLAGALAGFVSVAYTSYLGGKIIHDAPILTLPTAPAGL
                     PPGIATPPRAPGRP"
     gene            2350..>3093
                     /locus_tag="VLI40_13735"
     CDS             2350..>3093
                     /locus_tag="VLI40_13735"
                     /inference="COORDINATES: protein motif:HMM:NF014997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HSU98291.1"
                     /translation="MISSGLTPSGVNGFFIREQPSPSQGNTDTAGIARLLSCIIDTRT
                     IRMQSSYQLSIREPVNALTHLLGAVLAAIGMVVLLVNGAANDSARQVVAFAIFGTSLV
                     LLYSTSGIYHSLNCSERGLAMLRRLDHMMIYVLIAGTYTPVCLVLLRGSLGVTLLIVV
                     WIMALAGVVQKLAWMHAPRWFSTVLYLGMGWAAMILAKPLLGAAPLGFFLWIIAGGLF
                     YSVGAVVYATKWPNPAPRTFGFHEIWHLFV"
BASE COUNT          578 a          975 c          894 g          646 t
ORIGIN      
        1 aacgccggcg ctgtgacaaa cgtcacgccg atcaggtaac gcgccaggcg atcttccagc
       61 gatcttcgag cgatcttcca gcgcacacct gcacaacgtc aaatcgcccg cgatacacat
      121 ccataccatg ccggccactt actacgctgt cgtaacgatc cacgtgctga ctgctctctt
      181 ctggctcggc gggatgttct ttctcgccgt cattggcgcc ccgctcctac gatcagtcga
      241 gccgcccgag ctgcgccagc gtctgtttcg agaaatggga ttgaggtttc gcagcgccgg
      301 ctggattgca atttcaattc tggtcgtcac cggcgtgatc aacctgtatt accgcggctg
      361 gcttcactgg gatggcgtgt gggcgtcctc ggcgttctgg cacagcggcg ttgggcactc
      421 gctcgcatgc aagctcatcg ctgttaccgc catgatcgtg gtgagcacca ttcatgattt
      481 catcctcgga ccagcggccg gccgacagaa accaggctcg ccatccgcaa tcgcattccg
      541 gcgccacgca gcgcatctcg cgcgcgcgaa cgcagcgctc ggtatcatca tcgtaattgc
      601 cgccgtgcgt ctcgcacgcg gcgtctgacg ccaccaacca tgcctgactc cgtgcccgcg
      661 cactcgccca cacgtccctc aatccgcgac gctgacttca acgagtctcc attcatagtc
      721 atctgggaaa ccacgcaggc gtgtgatctt gcgtgcctgc attgccgagc ctctgcgcaa
      781 ccaaatcgtg attcgggtga gctcgatacg gcggaagcga aacgtctgat ggataccgtg
      841 cgccagtttg ggaagccact cttcgtcctc acaggcggcg atccgctcaa gcgggacgac
      901 acgatcgagc tcgtccagta cggcacgtcc atcggacttc gcatggcgat gacgccgtct
      961 ggaacaccgc tcatgacgcc tgatgtgctc cgagatcttc gcgacgccgg gcttgcacgt
     1021 ctcgcggtca gtctcgatgg ctccagcgct gcgattcacg atcgattccg cggcgtgtcc
     1081 ggctcatttg aatggactgt aagaatgctc gaggctgcgc gggaacttgg tctctcgact
     1141 cagatcaata cgactgtatc gagccataac ctgcacgatg tcgagccgat cgtgcagctc
     1201 atcgcgacac tcggcattgc actgtggtcg gtgttcttca tcgtcccaac cgggcgcgcc
     1261 agagcgtcgg acctcacaac cgccgacgag ttcgagcgtg tgtttcaccg gttgtacgac
     1321 ctgtccggaa cggctccctt cgacatcaag acaactgccg cgccgcacta ccgtcgcgtc
     1381 gtactgcagc gccaggtcgc cgagcgccgc tccggcgatc actcggggcc ggcgacaccg
     1441 ctcactgcag gagtcggatt cagcctcgcc gacggcgttg gacgcgccag aggcgtgaat
     1501 gatggcaacg gatttctctt cgtcagccac cgtggtgaca tctatccgtc aggttttcta
     1561 ccggtgagcg ccggtaacgt acgcacacac gacctcgttg acgtgtatcg gagcagtccg
     1621 ctatttcgtg accttcgcaa cacggacaag ctcgaaggaa agtgtggcgt gtgcgagtat
     1681 cgcacgatct gtggcggatc gcgtgcgcgc gcttacgcta cttccggcaa ctatctcgcg
     1741 tcggatccat actgctcgta cataccggcg cgtgctcgct aaggtcgtcc cggcgcacgc
     1801 ggaggagtgg cgattcctgg cggcagtccc gctggagctg tcggcagagt gagtatggga
     1861 gcgtcgtgaa ttatcttgcc cccgaggtac gacgtatacg ctacggacac gaatcctgca
     1921 agtgcacccg cgagtaccaa cgcgcggatc catacgggga tgatctcgtc gcgccgatgc
     1981 acggcacgcc accatccata tgcggccacc acgcccgtga caagaatgat gatcaacgcc
     2041 gtgccggccg cattgtcgtg tgcgtcgatc gccccgcgtg cgatgtacca tggatcgtgt
     2101 agcgcatgat ccgcctggtc accagtgaag tgcacggggt atatggacaa tcccgctact
     2161 gtaagtgtcc ccatcgcgta aagccacagg ccgcgacgtc gcagcaacag cgcgccgagt
     2221 gctgcgacca gccccatcgt cacaaggaca atcgggaaat ggttgatcag gagatggacg
     2281 tatggccagg ttagcgtcgg catgtgaggg agtgtgaaat gatcgcggga aatcgactag
     2341 ccgaaagcta tgatctcctc cggacttaca ccgtcaggcg ttaacggatt cttcatcagg
     2401 gaacagccgt caccatctca gggaaatacc gacaccgccg gtattgctcg ccttctatct
     2461 tgcatcatcg ataccaggac catccgcatg caaagtagct atcagctttc aattcgtgag
     2521 ccagtcaatg ctctgaccca cctgctcggc gcagtgctgg cggcgattgg catggtggtg
     2581 ctgctagtca acggagccgc caatgacagc gcacgacagg tagtggcgtt cgcgatattc
     2641 gggaccagcc tcgtgctcct gtacagcacc agcggtatct accactcgct caattgttcg
     2701 gagcgcggcc tcgcaatgct gcggcgcctg gatcacatga tgatctacgt gctgatcgcc
     2761 ggcacgtata cgccggtctg cctggtgctg ctccgaggca gtctcggggt cactctcctg
     2821 attgtcgtgt ggatcatggc gctcgcgggc gtcgttcaga aacttgcgtg gatgcacgcg
     2881 ccgcgctggt tctcgactgt gctctacctg ggtatgggct gggccgctat gatactcgcg
     2941 aagccactgc tcggtgctgc cccgctggga tttttcctct ggataatcgc cggcggcctg
     3001 ttttacagcg tgggggctgt cgtctatgcc accaagtggc ccaatccagc accgcgcaca
     3061 tttggctttc acgagatctg gcatctgttc gta
//
LOCUS       DATIMD010000613         2793 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4592880, whole genome shotgun sequence.
ACCESSION   DATIMD010000613 DATIMD010000000
VERSION     DATIMD010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4592880"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(26..895)
                     /locus_tag="VLI40_13740"
     CDS             complement(26..895)
                     /locus_tag="VLI40_13740"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSU98292.1"
                     /translation="MYGALLDAVRGLRWRARRVSRIAVPGIHPSRVRGTSAEFTEYRP
                     YRQGDDLRRIDWKLFARSDRAHVRISEERAVTPTYLVMDASASMAFPDGVGSKWTLAR
                     QMAVALASVAHSGGDPVGLMVPGNPRATIPPRTRRGVVAEVIQKLTDVPATGSSPLAA
                     TITIAARSASRIAIISDFLGDLDDTLKVARELVAAGRDVHALHIIAAEEIDPPRAVSL
                     VTDPESSDVRRYMADSVRDGYLRSYAEWREATATRWLASAAAYRTIIVGDEPVSHSVR
                     RVVRDEPAASRAG"
     gene            complement(937..1971)
                     /locus_tag="VLI40_13745"
     CDS             complement(937..1971)
                     /locus_tag="VLI40_13745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HSU98293.1"
                     /translation="MTAPTIAAREPLVPHERAELLEVAARLRAEVAGRIVGQEKVLDE
                     ILMALLAGGHALLVGVPGLAKTLMIRSVSEAMRLGFRRIQFTPDLVPSDITGTEVMEE
                     DATSHSRLFRFVQGPIFANIVLADEINRAPPRTQAALLEAMQEHSVTVAGETMPLPAP
                     FFVLATQNPIEQEGTYPLPEAQLDRFLFDIRVSYPDEDAEVAILRNTTGREYAPLEAV
                     IDAAQTIALQHMVRDVPVADVVLQYVARLVRATRPDESNAIPAVRQFVRWGAGPRAGQ
                     ALVLGAKAHALLAGRNAVTPADIKRVAHPVLRHRVLLNFAAEAEGLSAERIVDDLLEH
                     VPMPKSDIRV"
     gene            complement(2078..2527)
                     /locus_tag="VLI40_13750"
     CDS             complement(2078..2527)
                     /locus_tag="VLI40_13750"
                     /inference="COORDINATES: protein motif:HMM:NF023125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3293 domain-containing protein"
                     /protein_id="HSU98294.1"
                     /translation="MPDAAHEWGDFPNTVLHFRSTPEITIDLRTVVDGSTRSNLHRAG
                     FERSFGVITAQDPMGVTQLPAVNDALSASLQQEAAGLGVTHVCVDACSPDESHCERSV
                     AIALDERSLIDLAHRYEQLAMFWFDGEAFWIIPVHSRNARLQLPVSR"
     gene            complement(2520..>2793)
                     /locus_tag="VLI40_13755"
     CDS             complement(2520..>2793)
                     /locus_tag="VLI40_13755"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSU98295.1"
                     /translation="VRYVVRDTGIGIADEHRDRIFDAFWQVEQPSTRRVGGTGLGLSV
                     TRRLARLLGGDVTVTSKVGEGSAFIVSLPLELPSRAPTAEPAAIIA"
BASE COUNT          535 a          928 c          840 g          490 t
ORIGIN      
        1 agctcactgc gccctcactg ctgagctatc cggctcgcga tgctgcgggc tcatcgcgca
       61 ctacgcgccg cacggaatgg ctcaccggct cgtcgccgac aattatcgtg cgataggccg
      121 ccgcactcgc gagccaccgc gtcgccgtcg cctctctcca ctctgcatac gagcgcaggt
      181 atccgtcacg caccgaatcc gccatgtagc gacgtacgtc gctgctctcg gggtcggtca
      241 ccagggatac agcgcgaggt ggatcgatct cctccgcggc gatgatgtgc agcgcgtgca
      301 cgtcgcgacc ggcagcgacc agctcgcgcg caaccttcaa cgtgtcgtcc agatcgccga
      361 ggaagtcact gatgatcgcg atgcgcgatg cggagcgcgc cgcgattgta atggtggcag
      421 cgagtggact gctcccggtc gccggtacgt cggtcagctt ctggatcacc tcggcgacaa
      481 ctccgcgtcg cgttcgcggc gggatcgtcg cgcgtggatt gcccggtacc atgagtccga
      541 cgggatcgcc acccgagtgc gcgactgaag cgagcgcgac ggccatctgc cttgcaagcg
      601 tccacttgga gccgacacca tccggaaagg ccatggaggc gctcgcatcc attaccagat
      661 acgtcggtgt cacagcgcgc tcctccgaga tccgcacatg cgcacgatcg cttcgcgcga
      721 acagcttcca gtcgatacgc cggagatcgt cgccctgtcg gtatgggcgg tactccgtga
      781 attcggcgga ggttccgcgc acgcgtgagg gatggatacc aggtacggcg atgcgcgaca
      841 cgcggcgcgc gcgccatctc aagccgcgta ccgcgtcgag aagcgcaccg tacatcaatc
      901 cttcccggcc atcatcgtgc ggcgcgcgcc ggctcatcac accctgatat cgctcttcgg
      961 catcggcacg tgctcgagca gatcatccac tatccgttct gctgaaagcc cctctgcttc
     1021 ggcggcgaaa ttcagcagga cacggtgacg gagcaccggg tgcgctacgc gcttgatgtc
     1081 agccggtgtg accgcgttac gaccggccag cagcgcgtgt gcctttgcac cgagcaccag
     1141 agcctggccc gcgcgaggac cggcgcccca gcgcacgaat tgtctgaccg ccggtatcgc
     1201 attgctctcg tcgggccgcg ttgcacgaac gagccgcgca acatattgca gaaccacatc
     1261 cgcgaccggt acatcgcgca ccatgtgctg cagtgcaatc gtctgcgctg cgtcgatcac
     1321 cgcttcgagt ggcgcgtatt cgcggcccgt ggtattgcgc agaatagcga cctcggcgtc
     1381 ctcgtcggga tatgacacgc ggatgtcgaa cagaaaacga tccagctgcg cttcgggcag
     1441 tggatacgta ccttcctgct cgatcgggtt ctgcgtcgcc agcacgaaga acggagccgg
     1501 cagcggcatc gtctcgcccg ctactgtcac gctgtgctcc tgcatcgcct cgagcaacgc
     1561 ggcctgcgtc cgtggcggcg cacgattgat ctcgtccgcg agcacgatat tggcgaagat
     1621 cgggccctgc acaaaacgga agagacgtga atgcgaggtc gcatcctctt ccatcacctc
     1681 agtaccggtg atgtcggatg gcacgagatc cggcgtgaac tgaatgcggc gaaaccccaa
     1741 ccgcatcgcc tcggacactg atcggatcat cagcgtcttc gcgagtccgg gcacgcctac
     1801 cagcagcgcg tggccgccgg cgagcaacgc catgaggatc tcgtcaagca ctttttcctg
     1861 accgacgatt cgtccggcaa cctcggcgcg cagacgcgcg gcgacctcta gcagctcggc
     1921 gcgctcatgc ggaacaagtg gctcgcgcgc cgcaatggtt ggtgcagtca ttgagttcaa
     1981 tacgacggga ttcgactggt cgttgagtga gtcaggcaat gtatcgagca acggatccag
     2041 caaccgatcg agcattcaca caacgcgtcg acgccgatca cctgctcact ggaagctgca
     2101 atctcgcgtt gcgggagtgg actggaatta tccagaacgc ctcgccgtca aaccagaaca
     2161 ttgccagctg ttcatacctg tgcgcgaggt cgataagcga tcgctcgtcc agcgcaatcg
     2221 cgacgcttcg ctcacagtgc gactcgtcgg gactgcacgc gtcgacgcag acgtgcgtga
     2281 cacccagccc cgcagcctcc tgctgtaagc tagccgaaag cgcatcgttt acggccggca
     2341 actgcgtcac tcccatggga tcctgagcgg taataactcc gaacgaacgt tcgaaacctg
     2401 ctcgatggag attcgatcgc gtcgacccat cgacgaccgt ccgaagatcg atcgttatct
     2461 caggcgtcga gcgaaagtgg agcaccgtat tcggaaagtc gccccactcg tgagccgcgt
     2521 caggcaatga tggcggcagg ctcagcggtt ggcgcgcgcg aaggcagctc gagtggcagc
     2581 gaaacaatga aagcgctccc ctcgcccacc ttgctcgtga cggtcacatc cccgcccagt
     2641 agccgcgcga gacgacgcgt cacactcagg cccagaccag taccgccgac acgacgagtg
     2701 cttggctgct ccacctgcca gaatgcatcg aatatccggt cacggtgctc gtccgcaatg
     2761 ccgattccgg tatcgcgaac gacgtagcga acg
//
LOCUS       DATIMD010000614         4391 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_259929, whole genome shotgun sequence.
ACCESSION   DATIMD010000614 DATIMD010000000
VERSION     DATIMD010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4391
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259929"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..598)
                     /locus_tag="VLI40_13760"
     CDS             complement(<1..598)
                     /locus_tag="VLI40_13760"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU98296.1"
                     /translation="MIRPATQDRGTADALVSGDLTSTVEANETAAHGSFDAAPIPPLL
                     GRSLVLVFVVMFGATASFYLLLSVVPLYATAAGAGGIGAGFATGALMCSTVAAELATP
                     YMMTRFGYRIVLAAGLVFIGLPSLALIGSSSIAAILAICLVRGIGLGITVVVGSSLVV
                     WFVPEERHSEALGLYGVVVGIPAVVGLPMGVWFAVHFGY"
     gene            complement(595..1248)
                     /locus_tag="VLI40_13765"
     CDS             complement(595..1248)
                     /locus_tag="VLI40_13765"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HSU98297.1"
                     /translation="MQKAYDISLPVRLAEICNASHTALLVYDMQIGIRDQISDGNKIT
                     DSCAVALAAARQAGMRVVFTRHLSNPTPWIGLTQYRTAMAWQHTDNPEAVKSWFLRNA
                     PSSAIVPELAPTDDDLVLEKIGMSAFEGTPLAYALRDCGVVGIAIAGIALEIGIEPTV
                     RHATDLGFVPIVLTDACGFGNKEAAERTIATMRFVGEAELTDVATFTRLLGDTPQRP"
     gene            complement(1278..1979)
                     /locus_tag="VLI40_13770"
     CDS             complement(1278..1979)
                     /locus_tag="VLI40_13770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98298.1"
                     /translation="MRQTRTDAQTHASPSLLALAVVHTLLLIVSAATLAFLQHGAAAS
                     NLLALGPYGPPGAARVLVATNPQAIRISAFFLFGSAIPLGIYTATIASRLRFLGLRAA
                     GVDIAYVGGLAASGALAAASLCLWLLSLPEASASIPIVHVLHFLTFLSGGVAFSAGFG
                     LLVAGVSVTSYFAHLLPRWLVWFGLLIAAVGELATLSLITFSMTPAIPITRVGGLVWL
                     IIVGALMPKRAVSSE"
     gene            complement(2065..3441)
                     /locus_tag="VLI40_13775"
     CDS             complement(2065..3441)
                     /locus_tag="VLI40_13775"
                     /inference="COORDINATES: protein motif:HMM:NF015083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme peroxidase family protein"
                     /protein_id="HSU98299.1"
                     /translation="MATTSTQHPSRDYCLAPSRAADQAAGGRYQKLFPELEPLRTNET
                     LLHALGVMGGACDGSQLAAQGGDDGDTAAGWPFFGQFVAHDLTADRSPPAHTEMADKL
                     RNARAIQLDLESIYGQGPAGEPFLYDRNDSATLLLGRNDAGREDDLARNQQGIAIIAD
                     PRNDSHTVVSQMHVAFARAHNGLVDRMRTDGVTASELFDAARRSMLRHYHWVVVEDFL
                     PTLIGRELTEEIRRDGCRYYHPRSDAPFIPLEFADAAYRYGHGQIRHTYQLNQHAAPV
                     SMFPDLLGFRPVPSQRCIEWSLFFDADGARTAQRAKRLDGRLPAALLRLPEALTGDVD
                     DDAYHSLAARDLQRGHALSLPSGEAVARHMGVDPLTPDEVGLAASGWPDETPLWYYVL
                     KEGEHRGEGNRLGPVGGRIVGEVVLGLLMRDPEFYATVDPAWRPSLPARMPGRFTLAD
                     FLAFGASP"
     gene            complement(3558..4106)
                     /locus_tag="VLI40_13780"
     CDS             complement(3558..4106)
                     /locus_tag="VLI40_13780"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HSU98300.1"
                     /translation="MRRIINSTYVSVDGVIQNPQDWPSTPGDEETSFKIQNDLLSACD
                     AVLMGRHTYESFSSVWAGKSGGPYTDRINSMTKYVVSSTLPAATWENTTIIRSDAINE
                     IKRLKEQPGGDIVEYGFGSLSYALMERGLLDELRLWVHPFFVGASSPDDLLSRKCPTT
                     QLDLAGVQTLKSGVVILTYSFK"
BASE COUNT          913 a         1314 c         1326 g          838 t
ORIGIN      
        1 catacccaaa atgaacggcg aaccatacgc ccatcggaag gcccactacc gcgggtatgc
       61 cgacaaccac accgtaaagg cccagtgctt cactgtgccg ctcttccgga acgaaccaga
      121 ctacgagaga gctgccaacc acgactgtta ttccgagtcc gatcccgcga acgagacaga
      181 tcgcgagaat cgccgcgatg ctcgacgatc cgatcagggc cagagacggc aagccaatga
      241 acacaaggcc cgccgcgagc acgattcgat atccgaacct cgtcatcatg tacggcgtgg
      301 caagctcggc tgctaccgtg gagcacatga gcgctccggt tgcgaatcca gcaccaattc
      361 caccggctcc tgcggcagtt gcgtataacg gaacgaccga gagcagcagg tagaagcttg
      421 ccgtcgcgcc gaacatgacg acgaagacga gaactaaaga gcgaccaagg agcggaggta
      481 ttggagcagc gtcgaaagat ccgtgcgctg ctgtttcgtt cgcttcaacc gtgctggtga
      541 gatcgccgga taccagagcg tccgccgtcc cgcgatcttg ggttgctggc cgtatcatgg
      601 gcgctgcgga gtatcgccga ggagcctcgt gaacgtggcg acatcggtca actctgcctc
      661 gccgacaaat ctcatcgtcg cgatcgtgcg ttctgccgcc tccttgtttc cgaatccaca
      721 tgcgtctgtg aggacgatcg gcacaaaacc caggtcggtc gcgtgacgaa ccgttggctc
      781 gatgccgatt tccaatgcga ttccagcgat cgcaatcccc actactccgc agtcgcgcaa
      841 ggcatacgcc aggggagtcc cctcgaacgc agacattcca attttctcga ggaccaaatc
      901 gtcatccgtt ggtgcgagct ccggcacgat cgcgctcgac ggcgcgttcc gcaggaacca
      961 cgacttcacg gcttccggat tatccgtatg ctgccatgcc atcgcggtcc gatattgcgt
     1021 gagtccgatc cacggcgtcg gattggaaag gtggcgtgta aagaccacac gcattccagc
     1081 ttgtcgcgct gctgcgagag cgacggcaca ggaatccgtg atcttgttgc catcgctgat
     1141 ctggtcccga ataccgatct gcatgtcgta gacgagcaac gctgtatgcg aggcattgca
     1201 gatctcggcg agccgcacag gtagtgatat gtcgtacgct ttctgcatgg ggagtttgat
     1261 ttgactcgaa cgatttccta ttccgagctc accgcccgct tgggcatgag cgctccaacg
     1321 atgatcaacc agacaaggcc gcccacgcgc gtaatgggaa tggcgggcgt catggagaag
     1381 gtgatgaggc tcaatgtggc gagttctccc acagcggcga tcaacaggcc gaaccacaca
     1441 agccatcgcg gcagcaggtg cgcaaaataa ctcgtcaccg acactcctgc gaccagcaat
     1501 ccgaaacccg ctgagaacgc aactcctcct gagagaaagg tcaggaaatg caatacgtgg
     1561 acgattggta tcgaggcact tgcctcggga agcgacagca accacaagca caggctggcg
     1621 gctgccaggg cacccgatgc cgccagaccg cccacgtatg caatgtcgac tcctgctgca
     1681 cgaagcccca ggaatcgcag tcggctggcg attgtggcgg tatagatgcc aagcggtatt
     1741 gccgagccga ataagaagaa ggcgcttata cgaatcgctt gcgggttcgt cgcgaccaaa
     1801 acccgtgcgg ccccgggagg tccgtatgga ccaagcgcaa gcaggttgct ggcggcagcg
     1861 ccgtgttgca ggaaggcgag cgtcgcagcg ctcacgatta acagcagcgt gtgtaccact
     1921 gcaagtgcaa ggagcgacgg gcttgcgtga gtctgggcgt cggttctcgt ctgccgcatt
     1981 agtaatatta tctgcggacg attgcaacgt gatgtaataa tgttgtctgc aacacgatta
     2041 tctggtcgct cgcgctaccc tgcgtcacgg cgatgcgccg aacgccagga aatcggcgag
     2101 tgtaaagcgc ccgggcatgc gcgcgggcag cgatgggcgc cacgcagggt ccaccgttgc
     2161 gtagaactcc gggtcgcgca tgagcagccc gagtactact tcgcccacga tgcgaccgcc
     2221 aacggggcca agccgattgc cctcgccgcg gtgctctccc tctttcaaga cgtagtacca
     2281 gagcggtgtc tcatcgggcc agccggatgc tgcgaggccg acctcgtccg gcgtgagtgg
     2341 atcgacgccc atgtgacgcg ccacggcctc acccgacggt agcgaaagtg cgtgtccacg
     2401 ctgcagatcg cgcgctgcaa gtgaatgata tgcgtcatca tccacatcac ccgtgagtgc
     2461 ttccgggagg cgcagcaacg cagcggggag ccgtccgtcc agccgcttgg cgcgctgggc
     2521 tgtgcgcgca ccatcggcat cgaagaataa cgaccattca atgcagcgct gcgatggaac
     2581 gggccggaaa cccagcagat cgggaaacat cgacactggc gctgcatgct ggttcaattg
     2641 gtacgtgtgg cggatctgac cgtggccgta tctgtacgcc gcgtccgcga attcgagcgg
     2701 gatgaaggga gcgtcgctcc gcggatggta gtaacggcat ccgtcgcggc gaatttcctc
     2761 cgtcagctca cgtccgatga gcgttggcaa aaagtcctcg accacgaccc agtgatagtg
     2821 acgcagcatg ctgcgccgcg cggcgtcgaa cagttcgctc gccgtcacgc catcggtgcg
     2881 catccgatcg accagcccat tatgcgccct cgcgaacgcg acgtgcatct gggatacgac
     2941 ggtatgagaa tcgttacgtg ggtctgcaat gatggcaatc ccctgctggt tccgcgcaag
     3001 gtcatcttcg cgtccggcat cgttgcgtcc gagaagaaga gtggcgctgt cgttccgatc
     3061 gtagagaaac ggctcaccag ccggaccctg gccatagatc gattcgaggt cgagctggat
     3121 ggcgcgggcg ttacggagct tgtctgccat ttcggtgtgc gctggcggag atcgatctgc
     3181 agtgaggtcg tgtgccacga actgaccgaa gaaaggccac cccgctgcgg tgtcgccgtc
     3241 atcgccgccc tgcgccgcca gctgtgatcc atcgcacgct cctcccatga caccgagcgc
     3301 atgcaggagt gtctcattgg tgcgaagcgg ttcgagctcg gggaacaact tctgatagcg
     3361 accgcccgcc gcctgatctg cggcgcgaga cggagcgagg caataatcgc gggacgggtg
     3421 ctgtgtcgaa gtggtggcca tacgtgagcg tccttacagg cgtgtgccaa cttgctgtgc
     3481 catgcagcgc ggcgcgatgt gctttggctg cgcgagtagc gggcaatctg catgtttcag
     3541 tccacagaac tgcccaacta cttaaagctg tacgtcagaa tcacgacacc actcttgagc
     3601 gtctgcactc ccgcgagatc cagctgggtt gtcgggcact tgcgggaaag tagatcgtcc
     3661 gggctgctcg cgccgacgaa gaatggatgc acccagagcc gtaactcatc gagcaggccg
     3721 cgctccatga gcgcgtacga gagcgagcca aacccatact cgacgatatc accgcctggc
     3781 tgctctttaa gcctcttgat ctcattgatc gcatcgcttc tgatgatggt tgtgttctcc
     3841 catgttgcgg ccggaagcgt cgacgagacg acgtacttgg tcatgctgtt gatgcgatcc
     3901 gtgtaagggc cgccggactt tcccgcccac accgacgaga acgattcgta tgtgtggcga
     3961 cccatgagca ccgcatcgca ggcggacagt agatcgttct ggatcttgaa cgacgtctcc
     4021 tcatcgcccg gcgtggatgg ccaatcctgt ggattctgta tgacgccgtc gacagagacg
     4081 tacgttgagt tgatgatgcg ccgcattttg tgcttacccc tgattattta aggtgtcggc
     4141 gaggtcatcg caggttatcg tctatcgccg cttctgtaac tacgtcgaac gacgagtctg
     4201 aaaatcgaca aggccacctg ggttaatcgt cccgggggcg gagcaagccc cgggaacgat
     4261 tacccgatcc ttattcgtgg gagtaggccg cgcggaatgc atccagctca gcgggcgctg
     4321 catctgatac ggcccagtag ctgagatctc cgctggtcca gtgaagcacc tcgtatccat
     4381 cgtgtgcggt t
//
LOCUS       DATIMD010000615         3060 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_552635, whole genome shotgun sequence.
ACCESSION   DATIMD010000615 DATIMD010000000
VERSION     DATIMD010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3060
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_552635"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1937
                     /locus_tag="VLI40_13785"
     CDS             <1..1937
                     /locus_tag="VLI40_13785"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HSU98301.1"
                     /translation="RDTTRCVARRRSGSLRLRDALLKRLLDPEALVVFDGAMGTMIYA
                     RGVFINQCYDELSIRAPELISSIHDEYVNAGAEVIETNTFGANRVKLEQHGLSAEVYQ
                     INTAAAKLARASAGDSVLVAGAVGPLGVRLEPYGPTSRDDAREIFAEQMRALKDGGAD
                     LFILETFSDLDELTQAIAAARDVDAAMPVIAQVAINADGVTAYGATPEDIVLTLDAAG
                     ADIIGLNCSVGPQTILEAIEKMAPLTARKLSAQPNAGMPRDVGGRTMYMASPEYMSTY
                     ARHLVVAGAKLIGGCCGTTPAHVREIAEGVRPLAPRSGRTSRATVTHVTPENRTTGVA
                     PVPFPERSRWANKIAAGGFVTSVELVPPRGVDASKLLRDAATLRDAGVDAINVPDGPR
                     AQSRMGAVLTSLLIEQNAQIETVTHYCCRDRNLLGMLSDLLGASAVGLRNVLLITGDP
                     PKMGPYPSATAVFDIDSIGLTNLVSSLNRGLDPGGNPIGEPTRFVIGVGVNPAALDVA
                     NERRRFEWKVEAGAEYAITQPVFDADQLETFLHSVELLRVPVVAGIWPLVSVRNAEFL
                     ANEVPGVTVPDEIIARMRRANALSKEHAVQEGLAIAREMLERVRPMVAGVQVSAPFGK
                     AELALEVFADVLDKPVAVAS"
     gene            complement(2010..>3060)
                     /locus_tag="VLI40_13790"
     CDS             complement(2010..>3060)
                     /locus_tag="VLI40_13790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98302.1"
                     /translation="EALVFVRFLSLATLAFGSALVAAPLGAQTPASGFHVTRRIAVAG
                     DGGWDYVTFDTARSRIFISRSTRVQVVDANSGQLVTEIPNTGGVHGIALAYALGKGYT
                     SNGRDTTVTVFDFVTLAPRKVIHVTGANPDGILYDSASNRVFTFNGRGQNTTAIDAAG
                     DSVVGTLALGGKPEAAVSDGAGHIFVNIEDKSTIVEFDATKLTVLHTYPIAPCEEPSG
                     LAMDQEHHLLFAGCGNKMMGIIDSNTGKVVATPPTDGGTDANAFDAVTGIAFSSNGAG
                     TLTLVTQPAPGKFSSENVPTERGARTMALDPKTHRVYLVTASFNPAPAPTATQPRTRP
                     SIVPGSFVVLVVGKE"
BASE COUNT          561 a          927 c          974 g          598 t
ORIGIN      
        1 ggcgcgatac tacgcggtgc gtggcgcggc ggcggagcgg gagcctgcgc ttgcgtgacg
       61 cgctgctgaa gcggctgctc gatcccgagg cgctcgtcgt tttcgacggc gcaatgggaa
      121 cgatgatata cgcccgtggc gtgttcatca atcagtgcta tgatgagctc agcattcgcg
      181 cgcccgagct catcagctcg attcacgatg agtacgtcaa tgcgggcgcc gaggtgatcg
      241 agacgaacac cttcggtgcc aacagagtca agctggagca acacggtctg tccgctgagg
      301 tttaccagat caatactgcg gcggccaagc ttgctcgcgc atctgccggt gattccgtac
      361 tggttgccgg tgcagtcggg ccgctcggtg ttcgcctcga gccgtatggc cccacgtcgc
      421 gcgacgatgc gcgcgagatc ttcgcggagc agatgcgggc tttgaaggat ggcggcgccg
      481 atctgttcat tctggaaaca ttttcggatc tggatgagct gacccaggcg atagccgccg
      541 cgcgcgacgt cgatgcggca atgccggtca tcgcacaggt agcgatcaat gcggatggtg
      601 tcaccgccta cggcgcgacc ccggaagaca tcgtgctaac gctcgacgcc gccggcgcgg
      661 atatcatcgg tctcaactgc tccgtcggtc cgcagacgat tctcgaggct atcgagaaga
      721 tggcgccgct caccgcgcgc aagctcagtg cccaaccgaa cgcaggaatg ccgcgtgacg
      781 tgggcgggcg cacgatgtac atggcgagcc cggaatacat gtcgacgtat gcgcgccatc
      841 tcgtcgtggc cggtgcgaag ctgattggcg gatgctgcgg aaccacgccc gcgcacgttc
      901 gcgagattgc cgaaggcgtc cgcccgctgg caccacgctc gggccgtacg tcgcgtgcga
      961 cagtcacgca tgtcacgccg gagaacagga caaccggtgt cgcaccggtt ccgttccccg
     1021 agcgatcacg ctgggcgaac aagatcgctg cgggtggatt cgtaacgtcc gtcgagctgg
     1081 tgccgccgcg cggcgtcgac gcatccaagc tgctgcgcga cgctgcgacg ctgcgtgatg
     1141 caggtgtcga tgccatcaac gtgccggacg gcccgcgagc gcagagtcgc atgggagcgg
     1201 tcctcacgag tctcctcatc gaacagaacg cgcaaatcga gaccgtcaca cactactgct
     1261 gtcgtgatcg caatctgctc ggaatgctca gcgatctgct cggcgcatcc gctgtcggat
     1321 tgcggaacgt gttgctgatc acgggtgatc cacccaagat ggggccgtat ccatcagcga
     1381 cggctgtgtt cgacatcgat tcgatcggac tcacaaatct cgtcagcagt ctcaatcgcg
     1441 ggttggaccc cggtggcaat ccaatcggcg agccgacacg attcgtgata ggagtcggtg
     1501 taaaccccgc tgcactcgat gtcgcgaatg agcgacgccg tttcgagtgg aaggtcgagg
     1561 ccggcgctga gtacgcgatt actcagcccg tgttcgacgc ggatcaactc gagacgtttc
     1621 tgcacagcgt cgagttgctc agggttccgg tggtcgccgg aatctggccg ctggtctcgg
     1681 tgcgaaacgc tgaattcctg gctaacgagg tcccgggcgt caccgtgccc gacgagatca
     1741 tcgctcgcat gcgtcgcgcc aacgccctgt ccaaggaaca cgctgtgcag gaaggactcg
     1801 cgatcgcgcg cgaaatgctc gagcgtgtgc gaccgatggt cgcgggcgtc caggtctcgg
     1861 cgccgttcgg aaaggcggag cttgctctgg aagtcttcgc cgacgttctc gataagccgg
     1921 tagcagtcgc gagttgagag catacgacaa agcggctggt tgcaggaccg caaccagccg
     1981 ctttgtcgta tgctatggac ccgtcggggt cactccttgc cgactaccag cactacaaac
     2041 gatccgggca cgatgctggg tcgcgtacgc ggttgcgtcg cggtcggtgc cggcgctgga
     2101 ttgaagctcg ccgtgacgag atagaccctg tgcgttttcg ggtccagcgc catcgtgcgc
     2161 gcaccgcgct cggtcggaac gttctcgctt gagaatttgc ccggtgccgg ctgtgttacc
     2221 agtgtaagtg ttcccgcacc gttcgagctg aatgcaattc ccgttaccgc atcgaatgcg
     2281 ttggcatccg tgccgccatc tgtaggcggc gtggccacga ccttaccggt gttggagtcg
     2341 atgatgccca tcatcttgtt gccgcatccc gcgaagagca ggtgatgttc ctggtccatc
     2401 gcaagtccgc ttggttcctc gcacggtgcg atcggatatg tgtgaaggac ggtgagcttc
     2461 gtcgcatcga actcgactat cgtgctcttg tcctcgatgt tcacgaagat gtgaccggca
     2521 ccgtcggaca ctgccgcttc gggcttgcct cccaaggcga gtgtgccgac gactgaatca
     2581 ccggcggcat cgatcgccgt cgtgttctga ccgcgcccgt tgaacgtaaa tacgcgattc
     2641 gaagccgagt cgtacagaat tccgtcaggg ttcgcgccag tgacatgaat caccttcctt
     2701 ggtgcgagcg tcacgaaatc gaataccgta acggtggtgt cccgaccgtt gctcgtgtaa
     2761 cccttgccga gcgcatatgc cagcgcgatc ccgtgtactc caccggtgtt gggaatctct
     2821 gtgacgagct gacctgaatt tgcatcgacg acctgcacgc gagtggatcg cgagatgaat
     2881 atcctgctgc gtgcggtgtc gaacgtcacg tagtcccatc cgccatctcc ggcgaccgca
     2941 atacgacgcg taacatgaaa accactggcc ggcgtttgtg cgccgagtgg tgctgctacc
     3001 agggccgacc cgaacgccag cgtggcgagc gagagaaagc gtacgaacac gagagcctct
//
LOCUS       DATIMD010000616         9355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1130205, whole genome shotgun sequence.
ACCESSION   DATIMD010000616 DATIMD010000000
VERSION     DATIMD010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 9355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9355
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1130205"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1240)
                     /locus_tag="VLI40_13795"
     CDS             complement(<1..1240)
                     /locus_tag="VLI40_13795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HSU98303.1"
                     /translation="MSMSAVNFALAEAPSVDAASSSRSKRDVDAPGTSGTNAFAATLA
                     TAMHAPAAPAAKLKKDGADSELDARAAKAVARVAGKIAANAAGNAAGKVSANAAPDVA
                     SSTGASGVGAGTHAGKPAFAAAAEARAAAATAPVDSPNADADALNPDFRTRLARVVSR
                     MHDEFGKDVDVVEGFRTQSRQDHLYEQGRARPGDVVTWTKASKHTLGLAADVTIDGGY
                     TDTAGFQQLAQIAAQEGLRTLGPKDPGHIEMPTRGGAAAWGDSNPVDAVKIDDNVSRA
                     IGIAMDRGNVTGNVTDNGRDDSDGVNNFNGLLSRVGRSASTGMPQIQMPMMSGNGMAG
                     SGGGMSGNMFQRDRGDALKDSTTSGDTAKVANVADVASVASIAQVAQVAHVAAPSQPM
                     VIGAQVPQTANIGSGTDAAEK"
     gene            complement(1237..1911)
                     /locus_tag="VLI40_13800"
     CDS             complement(1237..1911)
                     /locus_tag="VLI40_13800"
                     /inference="COORDINATES: protein motif:HMM:NF015413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98304.1"
                     /translation="MKKLLIPFIASFGLSLGIATGVVMVRTPKPAVVAKTDKAAAPSA
                     KSDSAGVAKGGATTAVTDSVNSASAAATGQPVNADVAGTSGTTVPGATVPGDAGASAQ
                     SSASHDAPVRDDATKSNATAPPAHTPNTKLASTASAAPKTVIPAMKPATDSLIGRRLA
                     QVFAAMQPKDAARVLEQMGDSDVRAILGSLSSKQQAAILGSFPTQRAALILQATLRTA
                     SSGGTE"
     gene            complement(1908..2348)
                     /gene="fliJ"
                     /locus_tag="VLI40_13805"
     CDS             complement(1908..2348)
                     /gene="fliJ"
                     /locus_tag="VLI40_13805"
                     /inference="COORDINATES: protein motif:HMM:TIGR02473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export protein FliJ"
                     /protein_id="HSU98305.1"
                     /translation="MFRFRLQQVLDLREKQERHLATQLAAAMGAEREARNALNGLRAE
                     RDAGSEAIQDGQSHSVGELANLAFMMQQLDDRIAGANDTVSAANNSVSQVQEALTAAF
                     KDRRVLDRLRERHEETYRATAEQTDRRTMDDIALSRFVHNDNGQ"
     gene            complement(2351..3685)
                     /locus_tag="VLI40_13810"
     CDS             complement(2351..3685)
                     /locus_tag="VLI40_13810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliI/YscN family ATPase"
                     /protein_id="HSU98306.1"
                     /translation="MLLDAMADVVADTPRFDRYGRVTRVVGLVIEATGIDVGVGELCR
                     VTSLTDDRSVLAEVVGFHEDNVILMPLGELDGLHAGSFVQPLGRSFGVDVGPSLLGRV
                     LNGLGHPIDDKGPIEFTDRVPLAAEPPNPLERRMIDEPLETGVRAIDGMLTIGRGQRV
                     GIFAGSGVGKSTLLGMIARHAKADVNVIALLGERGREVRDFIEHSLGEEGLARSVIIV
                     ATGDQAALVRARGALVATAIAEYFRDQGKQVMLMLDSVTRVAMAWREIGLATGEPPTT
                     KGYPPSVFASLPRLLERAGNARVGGITGIYTVLVDGDDFNEPVADATRSILDGHIVLT
                     RKLASAGHFPSIDILDSKSRVRDQVVSPDHRAAAETILRTEATYREKEDLILVGAYQK
                     GTNATVDSAVEHREAVLSLLRQRSDETTTIDETHATMRALAARITSSNRQAA"
     gene            complement(3675..4346)
                     /locus_tag="VLI40_13815"
     CDS             complement(3675..4346)
                     /locus_tag="VLI40_13815"
                     /inference="COORDINATES: protein motif:HMM:NF014196.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliH/SctL family protein"
                     /protein_id="HSU98307.1"
                     /translation="MRSSNRPGVLPADAVPANHARWTPDDVATLHWATSSTDQAESHV
                     EQEAHARIEAERRVEEAHAAGYDAGRLDGELAEATRLRNAVAVAEQALDTIRASESKW
                     QECVTENIATLAVTVARHIVGRELRTDAASVADLVKRALAEFPIDQPMRVRVNPHDLS
                     LLSHPTPTGGDPAPIAPNRDVRWLADSRIQPGGCVVEGRERIVDGRVDTALERIYRKL
                     TDNVA"
     gene            complement(4330..5391)
                     /gene="fliG"
                     /locus_tag="VLI40_13820"
     CDS             complement(4330..5391)
                     /gene="fliG"
                     /locus_tag="VLI40_13820"
                     /inference="COORDINATES: protein motif:HMM:TIGR00207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009433 - bacterial-type flagellum basal
                     body, C ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HSU98308.1"
                     /translation="MGTAVVQAEERKSVAKLTAADLTGPQKVAVLCMSLGSDEAVKLT
                     QSLTPDEAEEISFHIAQMEQVSASTVEAVLTEWMQMALAVDSIAQGGISYAGEVLEKA
                     FGSHRANATLTRIQSQLADSAGLHRLRSADPQQLATTLRGEHPQTIALVLAHLEPQQT
                     ATILRDLDPSLGGEVMYRIGCMEKVAPDMMLLVEKALSNETDLSFTRGLRAAGGPDAV
                     ASVLNHVSGSLEKDLLDHIGERDTQLCEQIKNLMFVFDDVGKLDDRSLQRLLREVDAR
                     TLSLALKTAKEEMRERIMAGMSARAVTALKEEISMLGAVRVRDVEAAQAQIVAQVRSL
                     EAAGEITIGAGATEDAFIE"
     gene            complement(5392..6975)
                     /gene="fliF"
                     /locus_tag="VLI40_13825"
     CDS             complement(5392..6975)
                     /gene="fliF"
                     /locus_tag="VLI40_13825"
                     /inference="COORDINATES: protein motif:HMM:TIGR00206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HSU98309.1"
                     /translation="MADAIQDMLDRIGGRQRAMLLMVGVAVAAVIFGVSKWATEPDWV
                     PAFTNQPIETVGQMTDKLTAAGIGFKLDRGGSDILVSANDVARARVTLAQAGLPSAGR
                     PGMELFDQPSWGMTDFTQRINYRRALEGELERTIGKMTGVQSAQVHLALHEQATFRAQ
                     DKPANASVVLKTGGAAPSQDVVQGIAHLVASSVDGISADHVTVLDDSGRMLSTPDDGS
                     MASLTNAQLSTQREVEGYLQTKAEGLVDDIVGNGNARVRVSAALNFDKIERSSQLVDP
                     DKQATSTEQRYEITPGAQGGAASSNVAMSYDNSKITENFSGAIGNIKRLSVAVLLNDR
                     MIPPPANAGANAKPTYVARTPEEIARVESLIRGAVGADSTRGDVVTVVATHFDTAPVA
                     EIEKSAPQTILNTVQQFQKPAISVLAILALFVIAMMLIKAIKSLPASNSRSAYAPLAL
                     PAPGGQHSNQFATTAHDMAHAISANAHQQQQSYGVQPPPQPLAFPDQNQTRGRVAATI
                     AAKPDVSTRVVRAWLKEAV"
     gene            complement(6999..7325)
                     /gene="fliE"
                     /locus_tag="VLI40_13830"
     CDS             complement(6999..7325)
                     /gene="fliE"
                     /locus_tag="VLI40_13830"
                     /inference="COORDINATES: protein motif:HMM:NF014143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HSU98310.1"
                     /translation="MSNPIGGISNAIASTGLDTGAKQIPVLQDRGGSANATSFGDTLK
                     GLVNNVSDQQDMAADYAQRFARGEPVELHQVMAASEEASISLEMLVQVRNKFQDAYRT
                     LISMQS"
     gene            complement(7333..7692)
                     /locus_tag="VLI40_13835"
     CDS             complement(7333..7692)
                     /locus_tag="VLI40_13835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98311.1"
                     /translation="MAINGIGGGGFNPYATGVTRPSAGVPRQATQTSSDVAATDPKSL
                     ANAIKNDAAARTAQLNSGTAPNGVDQDLWSVLSKEERSFFMKAGTMGPLTYGRTSSSQ
                     GPAPAPILRGGRLDIKA"
     gene            complement(7709..8305)
                     /gene="flgC"
                     /locus_tag="VLI40_13840"
     CDS             complement(7709..8305)
                     /gene="flgC"
                     /locus_tag="VLI40_13840"
                     /inference="COORDINATES: protein motif:HMM:TIGR01395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HSU98312.1"
                     /translation="MPRPVGLLPSPAVNQPQPMFRSLAISASGLSAQRVRMETIASNI
                     ANAETTHDVNGQPYRRRVAVLSAGDGGSANGDPVAPGQPTGTSGVFNGVNAFQVPSGD
                     FPADGPRRFEVPVLETNGPDGGGTGVHVAGIQEDKTDGQLVYDPGHPDADKNGYVHYP
                     NVRVTDEMVDMMDARRVYEANASVFQTAKGMLKQALNI"
     gene            complement(8312..8584)
                     /locus_tag="VLI40_13845"
     CDS             complement(8312..8584)
                     /locus_tag="VLI40_13845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod C-terminal
                     domain-containing protein"
                     /protein_id="HSU98313.1"
                     /translation="MVPAGELKDALDVGTQRVRAIADRVSKASLQNQDGFALPGTPGA
                     NGSATTSSGVDIESEMISLADEQLRYEATSKLLAKAYDQVRTALKP"
     gene            complement(8800..>9355)
                     /locus_tag="VLI40_13850"
     CDS             complement(8800..>9355)
                     /locus_tag="VLI40_13850"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSU98314.1"
                     /translation="QDLYYRLSTIPVAIPPLRDRKDDIPALAYRFAIRIGAEMGKEVR
                     AISQEGLEVLQRYDWPGNVRELQHVVERAVILSSDPVVPAHAFEGLRFGLANALAGPV
                     SATQQALIAAGLAPIPDYDRDDGVLVRLTSLNVEDAERAMIQKALEMSGNNRTRAAEL
                     LGMSVRTLRNKLNTPANGEASLTL"
BASE COUNT         1627 a         3040 c         2738 g         1950 t
ORIGIN      
        1 ccttctcagc ggcgtccgtc ccgctgccga tgttggcagt ctgcggtacc tgcgctccga
       61 taaccatcgg ttgcgatggt gcagcgacgt gcgccacctg cgctacctga gcgatcgacg
      121 caacgctcgc gacgtcggca acgttcgcaa ctttcgcggt atcgccagac gtggtgctat
      181 ccttcagagc gtcgccacga tcgcgctgga acatgttacc tgacattccg ccgccgcttc
      241 cggccatccc gttgcctgac atcatcggca tctggatctg cggcatgccg gtagatgcac
      301 tgcgtccaac tctgctcagc agcccattga agttgttgac accatcactg tcatcgcgcc
      361 cattgtcagt cacattgcca gtcacattgc cccgatccat cgcgatcccg attgcgcgag
      421 acacgttgtc atcgattttt acggcgtcga cgggattact atcgccccat gcagctgctc
      481 cgccgcgcgt tggcatttcg atatgaccgg gatccttggg accgagcgtg cgaagtcctt
      541 cctgcgcggc gatctgtgcc agctgctgga aacctgcggt gtcagtgtat ccaccatcga
      601 tggtgacgtc cgccgcaagg cccagcgtat gcttgcttgc ctttgtccac gtaacgacgt
      661 cgccaggacg cgcgcggccc tgctcataca gatgatcctg ccgcgactgc gttctgaatc
      721 cctcgacgac atcgacatcc ttgccgaact cgtcgtgcat tcggctcacc acgcgtgcta
      781 gccgcgtgcg gaaatccgga ttgagcgcgt cggcgtcggc attgggacta tcgaccggag
      841 cggtggccgc ggctgcgcgc gcttccgcgg ctgcagcgaa ggccggctta ccggcgtgag
      901 tcccagcgcc gacgccagac gcgccagtac tggatgcaac atcgggcgcg gcgttggctg
      961 acaccttgcc tgcagcattg cctgcagcat tcgctgcaat cttgcccgca accctcgcta
     1021 cggccttggc tgcacgcgcg tcgagctcgg agtcggcgcc gtctttcttc aacttcgcag
     1081 caggcgctgc gggcgcgtgc attgccgtcg cgagtgtggc ggcgaacgca ttcgtgccgg
     1141 acgtgcctgg cgcatctacg tcacgcttgg agcgagatga cgaagccgca tcgaccgacg
     1201 gcgcctccgc aagagcaaaa ttgacggctg acatgctcat tctgtgcctc cgctggacgc
     1261 ggtgcgaagt gtagcctgaa ggatcagcgc cgcgcgctgc gtcggaaacg atccgagaat
     1321 ggctgcctgc tgtttgctgg agagcgagcc gagtattgcg cgaacgtcgc tatcgcccat
     1381 ctgctcgaga acacgggctg cgtcctttgg ttgcatggcg gcaaatacct gcgccagccg
     1441 tcggccaatg agtgaatcgg tcgccggctt catcgccggt atcaccgtct tgggagcagc
     1501 gctggcggtc gatgcaagct ttgtattcgg agtatgcgcc ggtggtgccg tcgcgtttga
     1561 cttggtcgca tcatcccgta caggcgcgtc gtgacttgcc gacgattgcg ccgaagctcc
     1621 ggcgtcgcca ggtacggtcg cgccaggtac ggtcgtgccc gacgtgcccg cgacatccgc
     1681 attgactggt tgcccggttg ctgccgcgct cgcagagttg acggagtccg tcaccgctgt
     1741 cgtagcgcct ccctttgcga ctccggccga atccgatttc gcactcggcg cagccgcctt
     1801 gtcggttttt gccacgaccg ctggcttggg cgtgcgaacc atcactacac cggtcgcgat
     1861 gccgaggctg aggccaaatg atgctatgaa cggaattaaa agcttcttca ttgcccgttg
     1921 tcgttgtgca cgaagcgcga gagcgcgatg tcgtccatcg ttctccgatc tgtctgctcc
     1981 gcagttgcgc gatatgtctc ttcgtgccgc tcacgaaggc gatccagaac gcgacggtcc
     2041 ttgaacgccg cggtaagtgc ttcctgcacc tgcgagacgc tgttgtttgc ggcactgacc
     2101 gtgtcgttcg cgcccgcgat cctgtcatcg agctgctgca tcatgaaagc cagattcgcg
     2161 agctcgccca ccgaatggct ctggccgtcc tgtattgctt ccgatcccgc gtcacgctcg
     2221 gcgcgcagcc cgttgagcgc atttctcgct tcgcgctctg cgcccatggc agcggcaagc
     2281 tgagttgcaa gatgacgctc ctgtttctct ctgagatcca gaacctgctg aagacgaaat
     2341 cgaaacatcg ttacgccgcc tgccggttgg aggatgtgat acgggcagcg agcgcgcgca
     2401 ttgtcgcgtg cgtctcgtcg atcgtcgtgg tttcgtccga gcgctgtcgc agcagcgata
     2461 acaccgcctc gcgatgctcc actgcggagt ccacggtcgc gtttgttcct ttctggtatg
     2521 caccgacgag aatgagatcc tccttctcgc gatacgtcgc ttcggtacga agaatcgttt
     2581 ccgccgcggc acggtggtcc ggcgacacta cctgatcgcg aacccggctc ttgctgtcga
     2641 gaatgtcgat cgaagggaag tggccagcag acgccagctt gcgcgtaagg acgatgtgac
     2701 cgtcgagtat cgagcgcgtt gcatccgcaa cgggttcgtt gaagtcgtcg ccatccacca
     2761 gcacagtgta gatgccggtg ataccgccga cgcgagcgtt ccctgcgcgt tccagcaaac
     2821 ggggaaggga cgcgaacact gacggcgggt aaccctttgt agtcggtggc tcgccggttg
     2881 ccaacccgat ctcgcgccac gccattgcca cgcgcgtaac ggaatcgagc atcagcatca
     2941 cctgcttgcc ctggtcgcga aaatattcag cgatggctgt agcgacgagc gcaccgcgtg
     3001 cgcgaacgag tgctgcctgg tcgcccgtcg cgactattat cacggagcga gcgagccctt
     3061 cctcgccaag cgaatgctcg atgaagtcac gcacctcgcg gccacgctcg ccgagtagcg
     3121 cgatcacgtt gacgtcagcc ttggcgtgcc gtgcgatcat gccgagaaga gtgctcttgc
     3181 cgacgcctga ccccgcgaat attccgacgc gctgcccgcg gccaatggtg agcatcccat
     3241 cgattgcacg aacgccggtc tccagcggtt cgtcgatcat gcgacgctcg agcgggttcg
     3301 gaggctcggc agcgagcgga acgcggtcag tgaattcgat cgggcccttg tcgtcgatcg
     3361 gatggcccag gccgttgaga acacgcccga gcagcgaggg cccaacgtcc actccgaacg
     3421 agcggccaag tggctgcacg aaacttcccg cgtgcaggcc atcgagctca cccagtggca
     3481 tcagaatcac gttgtcttcg tggaatccca ctacttcggc cagcaccgat ctgtcatccg
     3541 tgagacttgt gacgcgacag agctcgccga caccgacgtc gattcccgtt gcctcgatga
     3601 cgagaccaac gactcgcgtg acgcgaccgt atcggtcgaa tcgtggcgta tcggcgacca
     3661 cgtccgccat ggcgtcaagc aacattgtcc gtcaactttc gatagatccg ttcaagcgcc
     3721 gtatccacgc gtccatccac aatccgctcg cgtccttcga cgacgcagcc gcccggctga
     3781 atccgtgaat ccgccagcca ccgcacgtcg cggttgggtg cgattggagc agggtcgcca
     3841 ccagtaggtg tcggatgcga tagaagcgac aggtcgtgtg ggttcacgcg aacacgcatg
     3901 ggctgatcga ttggaaactc cgccagcgcg cgcttgacca gatccgcgac cgaagcagcg
     3961 tcggtgcgta gctctcgtcc aacgatatga cgcgcgacag tcactgccag agtcgcgatg
     4021 ttctcggtaa cgcattcctg ccacttggac tcgctcgcgc gaatcgtatc aagcgcctgt
     4081 tctgccaccg ccaccgcgtt gcgcagacga gttgcctcgg ccagctcgcc gtccagtcgt
     4141 cccgcgtcgt agcctgcggc gtgtgcttct tccacacgtc gctccgcctc gatgcgagca
     4201 tgcgcctcct gctcgacgtg tgattccgcc tgatctgtgc tggacgtcgc ccagtgtagc
     4261 gtcgcgacgt cgtccggcgt ccatcgtgca tggttcgccg gcaccgcgtc agcggggagc
     4321 acgccgggcc tattcgatga acgcatcttc cgtcgctccg gcgccgattg tgatttcgcc
     4381 ggccgcttcg agcgaccgaa cctgcgcgac gatctgtgcc tgggctgctt ccacatcgcg
     4441 gacgcgtacc gcacccagca tcgatatctc ttccttgagc gcggtgaccg cacgtgccga
     4501 catgccggcc atgatgcgct cccgcatctc ttccttcgcc gtcttgagcg ccagtgaaag
     4561 agtgcgagca tcgacctcgc ggagcagccg ctgcaacgag cggtcgtcca gcttgcccac
     4621 atcgtcgaat acgaacatga gattcttgat ctgctcgcac agctgcgtat cccgctcgcc
     4681 gatgtgatcg aggagatcct tttccagcga gccggatacg tgattgagca cgctcgccac
     4741 cgcgtccggt ccaccagctg cgcgcagacc gcgcgtgaag ctgagatcgg tctcgttgct
     4801 gagagccttc tccaccagca acatcatgtc cggcgcgacc ttctccatgc agccgatgcg
     4861 atacatcacc tcgccgccaa gtgacggatc caggtcacgc aggatcgtcg ccgtctgctg
     4921 cggctccagg tgcgcgagaa cgagagcaat tgtctgtgga tgttcgccgc gaagtgtagt
     4981 tgcaagctgt tgcggatcag cactgcgtaa gcggtgcaat cctgcagagt cggccagttg
     5041 cgactgaatt cgcgtcagtg tcgcgttggc tctgtggctg ccgaatgcct tctcgagcac
     5101 ctcgcccgca taactgatac cgccctgcgc gatggaatcg acggcaagtg ccatctgcat
     5161 ccactcggtc agcaccgctt caacagtact cgcacttacc tgttccatct gcgcgatgtg
     5221 gaagctgatc tcctcggctt catcaggtgt gagcgactgc gtcagcttca ctgcttcgtc
     5281 agagccgagc gacatgcaca ggaccgcaac cttctgcgga ccggtcagat cggcagcggt
     5341 cagcttggcg acgctctttc gttcttcagc ctgcactacg gcggttccca tttatactgc
     5401 ttccttgagc cacgcgcgta ctacgcgagt cgagacgtca ggcttggctg cgatcgtcgc
     5461 cgcgacgcgc ccacgggtct ggttctggtc cggaaatgcg agcggttgag gcggaggctg
     5521 aactccgtag ctctgctgtt gctgatgggc gttcgccgag atcgcatgcg ccatgtcatg
     5581 cgccgtcgtg gcaaactggt ttgagtgctg tccgccaggt gcaggtagcg caagcggggc
     5641 atatgccgac cgcgaatttg acgctggcag agacttgatc gccttgatca gcatcatcgc
     5701 gatcacgaag agcgccagaa tcgcaagcac ggagatggcc ggcttctgga actgctggac
     5761 agtgttgagg atcgtctgag gggcgctctt ctcgatctcg gcaacaggtg ccgtgtcgaa
     5821 gtgcgtcgcg actaccgtga cgacgtcgcc acgcgtactg tcggcaccca ctgcgccgcg
     5881 gatcagtgat tccacccgcg cgatctcttc aggagtgcgc gcaacatatg tgggtttcgc
     5941 gttggcacct gcattggcag gcggcggaat catgcgatcg ttcaacagaa ccgcaaccga
     6001 aagcctcttg atgttgccga tcgcaccgga gaagttctcg gtgatcttgg aattgtcata
     6061 gctcatcgcg acgttcgacg acgcagctcc gccctgagcg ccaggcgtga tctcataccg
     6121 ctgttccgtg ctggtcgcct gcttgtcggg gtcgacgagc tgcgacgagc gctcgatctt
     6181 gtcgaagttg agcgctgcgg atacacgaac gcgcgcattg ccgttaccaa cgatgtcgtc
     6241 gaccaggcct tcggcctttg tctgcaggta tccttcgact tcgcgctgag tcgagagctg
     6301 cgcgttcgtc agcgaagcca tcgaaccgtc atcaggcgtc gacagcattc ttcctgagtc
     6361 gtcgagcact gtaacatggt ccgcagatat cccgtccacg ctgctcgcca cgagatgcgc
     6421 gatgccctgt acgacgtcct gcgacggcgc ggcgccaccg gtcttcaata ccacggatgc
     6481 gttcgccggt ttgtcctgcg cgcggaacgt tgcctgctcg tgcagtgcca gatgaacctg
     6541 cgcagattgt acgccggtca tcttgccgat cgtgcgctcg agttctcctt cgagcgcgcg
     6601 gcgataattg attcgctgcg tgaagtcggt cattccccac gagggctgat cgaacagctc
     6661 catgccaggg cgtcccgccg acggaagtcc ggcctgcgcc agcgtcacgc gcgcacgtgc
     6721 aacgtcgttg gcactcacca gaatgtcgct gccgccacga tccagcttga atccgattcc
     6781 ggccgccgtg agcttgtccg tcatctgccc caccgtctcg atgggctgat tggtgaaggc
     6841 cggtacccag tccggctccg tcgcccactt cgatacacca aaaatcaccg cggccacggc
     6901 aacgcctacc atcaacaaca tggcgcgttg acgaccgccg atgcgatcga gcatgtcctg
     6961 aattgcgtca gccacggctt atagtccccg gttctcgatc acgattgcat actgatcaac
     7021 gtccgatacg cgtcctgaaa cttgttgcgc acctggacca gcatctccag cgaaatcgac
     7081 gcttcctcgg aagccgccat cacctgatgc agctcgaccg gctcgccgcg cgcgaaacgt
     7141 tgcgcgtaat ccgcggccat gtcctgctgg tccgaaacgt tgttgacgag tcccttgagc
     7201 gtgtcgccga agctcgtcgc gttcgcgctt ccgccacggt cctgcaacac cggtatctgc
     7261 tttgcaccag tgtccagtcc agtgctggct atcgcgttgc ttattccacc aatcgggttt
     7321 gacattggat cctcaggcct tgatgtccag acggccgccg cgtagaatcg gcgccggtgc
     7381 cggaccctgc gacgagctcg tgcggccgta cgtcaacggc cccatcgttc cagccttcat
     7441 gaagaacgag cgctcttcct tgctcaacac actccacaga tcctggtcca cgccgttcgg
     7501 cgccgtcccg gagttgagct gcgccgttcg cgctgctgcg tcgttcttta tcgcattcgc
     7561 cagcgacttt gggtcggttg ctgcgacgtc gctcgatgtc tgcgtcgcct gacgcggcac
     7621 gccagcactc ggacgcgtta cgcccgtcgc gtatggattg aatccgccgc cgccaattcc
     7681 gttgatcgcc attctggtcg cttgtgtctt aaatgttcag agcttgcttc agcattccct
     7741 tcgccgtctg aaacacgctg gcgttcgcct cgtacactcg gcgcgcatcc atcatgtcca
     7801 ccatctcgtc cgtcacacgc acgttcgggt aatgcacata tccgttcttg tccgcgtccg
     7861 gatgtcccgg atcgtagacc agttgtccgt cagtcttgtc ttcctgaatt ccggcgacgt
     7921 gcacaccggt gccgccacca tcgggcccgt tcgtttccag caccggcacc tcgaagcgac
     7981 gcgggccgtc agccgggaaa tcgccactcg gcacctggaa cgcgttgacg ccgttgaaca
     8041 cgcccgaagt tcctgtcggc tgccccggcg cgaccggatc tccgtttgca ctgccgccgt
     8101 cgcccgcgga gagaaccgca acgcgacgcc ggtacggctg tccgttcaca tcgtgcgtcg
     8161 tttccgcatt ggcgatgttc gaggcgatcg tctccatgcg aacccgctgc gccgacagtc
     8221 cgctcgctga aatggcgaga gaccggaaca tcggctgcgg ctgatttacc gctggtgatg
     8281 gaagtaatcc gactggacga ggcatcgatt atcagggttt gagggcggtc cgaacctgat
     8341 cgtaggcctt cgccagcagc ttggatgtcg cttcgtagcg cagctgctcg tcggccagac
     8401 tgatcatctc actctctata tccacaccag acgacgtcgt ggcagagcca ttcgctccag
     8461 gcgtgcccgg aagcgcgaaa ccatcctggt tctggagcga ggccttggac acgcgatccg
     8521 cgatcgcccg aaccctttgg gtcccgacgt ccagagcgtc cttcagctcc cctgccggaa
     8581 ccactcggct aatgaatcct gtgatcatct cggtgtcgtg ctaaagcaac gcgaggacca
     8641 aactggtcgc gcgcttcgac gccagaaacg acaaagcgct aagtgattat gtaacaatca
     8701 cttagcgctg aagatcagat cggattttcg ctttacggca gaatttgcct agtcgaaaaa
     8761 agaggaaaaa actgccgagt cggcatatct tgccggattt tacagggtca agcttgcctc
     8821 accgttcgcc ggagtgttga gcttgttccg gagcgtgcga acactcatcc ccagcagttc
     8881 ggcagctctg gtccggttgt ttccggacat ctcgagagcc ttctgaatca tcgctcgctc
     8941 cgcgtcttcc acattgagcg aggtcagacg gacgagcact ccgtcgtccc ggtcgtagtc
     9001 cggtatgggc gccagacccg cggcgataag tgcctgctga gtcgccgaca ccggcccggc
     9061 gagcgcgttg gccaatccga acctgagtcc ctcgaacgca tgcgccggca ctaccggatc
     9121 ggatgaaagg atcacggctc gctcgaccac atgttgcagc tcgcgaacat tgcccggcca
     9181 gtcataccgc tggagcacct ccaggccttc ctgcgatatc gccctgacct ccttgcccat
     9241 ctccgcgcca atccggattg caaatctgta cgccagggcg gggatgtcat cctttcggtc
     9301 gcgcaatggt gggatcgcta ccgggatcgt gctcaatcta tagtagaggt cctgc
//
LOCUS       DATIMD010000617         5088 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1711800, whole genome shotgun sequence.
ACCESSION   DATIMD010000617 DATIMD010000000
VERSION     DATIMD010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5088
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1711800"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(29..1294)
                     /locus_tag="VLI40_13855"
     CDS             complement(29..1294)
                     /locus_tag="VLI40_13855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacetone oxidase family FAD-binding enzyme"
                     /protein_id="HSU98315.1"
                     /translation="MSAATQDSPDVAGHVVIVGGGAAGTMAAIFAAASGARTTLLERT
                     ADGGRKILISGGGRCNILPARLDESRFVTDSSRNTLHKIVRSWPLAEQRAFFEGELGL
                     KLVEETESGKLFPESNRARDVRDGLLAYAAQRGARVEMNSRVTDVVPLHDGRWRVERD
                     GDLPLECDAVIIASGGLSVPNTGSDGFGLSILAKLGHTMHPTYAALTPVTAEPAPFAE
                     LSGVSLTVTVTATSAERNATATGGFLFTHRGYSGPSVLDISHVVVRSANDHTDPPARI
                     SVRWSALGDAEWEHALRASGTRTVAGAVRAEMPDRLAAALIASAGVDPARMLAELKRE
                     ERRALIETLVRGDLPWTGNEGYKKAEVTGGGLSLAEIDPRTMESRRHRGLFVCGEALD
                     AFGPIGGYNFLWAWATGRAAGRGAAIATP"
     gene            complement(1291..1641)
                     /locus_tag="VLI40_13860"
     CDS             complement(1291..1641)
                     /locus_tag="VLI40_13860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98316.1"
                     /translation="MPQSSLVMWVGIAVALLLLALCGATTYAILRRPTRTRIVHWPAT
                     RLVGVCVLAVLPWLVVWLRAWRGVNNVSISVNGTGSLIGWLVIALIVFALLILLPLAA
                     MLSLLVWSAVRIRR"
     gene            1876..3024
                     /locus_tag="VLI40_13865"
     CDS             1876..3024
                     /locus_tag="VLI40_13865"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF006050.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HSU98317.1"
                     /translation="MANLTYFECTKCGEHFSPAEPHTVCPIDGGSLYARYDLEPYRGL
                     ASRDSLSGRVASMWRYSDVLPAVEPVTLGEGFTPMIQSRHNPNVYIKDEGLNPTGSFK
                     ARGLCAAVTMCKAYGIDKIAIPSAGNAASALAAYCAAAGIEAHIFMPKDVPMANRVEC
                     QQYGARVTFVDGLISDCAKIVNERKQAEGWFDISSLKEPFRVEGKKTMGYEVAEQLGW
                     KLPDAIFYPTGGGVGLIGMWKAFEEMQYLGWIGAERPKMIAVQAAGCAPIPKAWDEHK
                     PTSEFWQDAHTIAAGLRVPKAYADYIILNIIRDSKGTAVTATDAEMLDAVSAMASKEG
                     VFAAPEGAATLVAYDKLIASGFLKPSDRVVLFNTGSGLKYIDVIGSGH"
     gene            3121..4173
                     /locus_tag="VLI40_13870"
     CDS             3121..4173
                     /locus_tag="VLI40_13870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98318.1"
                     /translation="MIRVTPGIQAVLAAAFVALPAGLSAQSFTVHKYTIGGEGGTDYL
                     TADPASGRVFVSRGTHVMVVDGTTGKVVGDIPDTPRMHGIALAPKWNHGFTTNAGDST
                     VTMFDLKTLAVIKKIHAGIDGLDGIMYDDGTDRIVTTDHSNPMGTAVVIDPKDGTVVT
                     TVMLTGRGPEGAVGNAKGRIFVNLEDKNALDVIDTKTWKVVATWPIAPCDGPTGIAMD
                     RAANRIFSGCGKTSVVTDASTGKVVAQIPNGDGVDALGWDQSQKLMYIPAGRDGNVTV
                     VHEDSPDKYTVIATVATQPGAKTITVDPTTHMAYLFQPEYGPAPAPAPGTVPDSNPRR
                     RPRGPMIGTWFISIAH"
     gene            complement(4298..4738)
                     /locus_tag="VLI40_13875"
     CDS             complement(4298..4738)
                     /locus_tag="VLI40_13875"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HSU98319.1"
                     /translation="MVSLRFLLDTCFLSDLVKIVPPPGIKAWSRANNAEECAISVMTI
                     GEIRHGINLLPEGGRRTELRNWLARDVIQRFADRTVDITVEIAEAWAGLTAQAHRTKR
                     SLSAPDGLILATAIVHRLSVVTRNVRDFSGYDVPIVNPWDAGSI"
     gene            complement(4746..5018)
                     /locus_tag="VLI40_13880"
     CDS             complement(4746..5018)
                     /locus_tag="VLI40_13880"
                     /inference="COORDINATES: protein motif:HMM:TIGR01552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0110001 - toxin-antitoxin complex
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HSU98320.1"
                     /translation="MAEKVPNVWTLQDAKNRFSEVVRDAVEVGPQTITRHGVVTVVIM
                     SASDYERDRKPFRSLYDALRPPGFVGVDLDIERDRSPMREIDFSEE"
BASE COUNT          999 a         1568 c         1590 g          931 t
ORIGIN      
        1 gacgcgcagg cggcgttggc gccgagggct agggcgtagc gatcgctgct ccccgccccg
       61 cggcgcgccc cgtcgcccag gcccagagaa agttgtaacc accgatcgga ccaaacgcat
      121 cgagcgcttc tccgcacacg aaaagaccac gatgccggcg gctctccatc gttcggggat
      181 cgatctctgc gagactcaaa ccgccgcctg tcacctcggc tttcttgtat ccctcgttac
      241 ccgtccacgg cagatcgcca cgcaccagcg tttcgatcag cgcgcgtcgc tcttctcgct
      301 tgagttcagc aagcatgcgt gcgggatcga cgcccgccga tgcgatgagc gccgctgcga
      361 gccggtccgg catctccgca cgcactgcgc cagcgacggt acgagtgccg ctcgcgcgca
      421 gtgcatgctc ccactctgca tcgcccagtg cgctccagcg cacggagatg cgagcgggcg
      481 gatcggtgtg atcgttggcc gagcgcacca ctacatgcga gatatccagc actgatggac
      541 cgctgtagcc gcgatgcgtg aagagaaatc caccggtcgc cgttgcgttg cgctccgcac
      601 ttgtcgcggt gacggtcact gtgagcgaca cacctgacaa ttcggcgaac ggcgccggct
      661 cggcggttac gggggtgagt gcagcgtagg tcggatgcat cgtgtggccg agcttcgcca
      721 gaatggagag tccgaacccg tcgcttccag tgttggggac cgaaagtcca ccgctcgcga
      781 tgatgacggc atcgcactcc agcggcagat ctccgtcacg ttcgacacgc caccgcccgt
      841 catgcagtgg cacgacgtcg gtgacgcgac tgttcatctc tactcgagcc ccgcgttggg
      901 ccgcgtatgc caacagcccg tcgcgcacat cgcgcgcacg gttggattcc gggaataatt
      961 ttccggattc ggtttcctcg acgagcttca atccgagctc gccctcgaaa aatgcacgct
     1021 gctcggcgag cggccacgac ctgacgatct tgtgaagcgt attgcgcgac gaatcggtga
     1081 cgaaacgaga ctcgtcgagc ctcgctggta gaatgttgca gcggccgcct ccactgatca
     1141 gaatcttgcg tccgccgtcc gcggtgcgct cgagcagcgt tgtcctggcg ccggaggctg
     1201 cggcgaagat tgcggccatc gtaccggcgg cgccgccacc gacgattacg acgtgtcctg
     1261 cgacatccgg cgagtcctgt gtggccgcgc tcatcgcctg atccgtacgg ctgaccatac
     1321 aagcagggaa agcatggcag ccagcggaag caggatcagc agagcgaaca caatcagtgc
     1381 gatgaccagc cagccaatga gcgatcccgt tccgttgacg ctgatggaga cattgttcac
     1441 accgcgccac gcgcggagcc acacaacgag ccatggaagt accgcgagca cgcacacccc
     1501 gaccagccgt gtcgcgggcc agtggacaat ccgcgtacgg gtcggccggc ggaggatcgc
     1561 ataggtcgtg gccccgcaga gtgcgagcag cagcagcgcc acagcgattc cgacccacat
     1621 gaccagcgat gactgcggca tggtgcttct tgttgctcct tcaggaagtt gcgcgccggg
     1681 ctctgtgtac gccatcgcgt acgctcgcga tggcggcgtc tccgggcagg ggtcgccacc
     1741 gatcaagtta ccacgagcaa cgcgagccgg atcagagtag tatcatcgat gtgacactga
     1801 acatgccgcc ggcgagcgga cagccctgcg tcacacttat caactgaact ggaatccctg
     1861 aggaaccgac ccggaatggc aaatcttacc tacttcgaat gcaccaagtg cggggagcac
     1921 ttcagccccg ctgaacccca tacagtctgt ccgatagatg gcggatcgct ctacgcccgc
     1981 tacgacctgg agccatatcg cggtcttgcg tcgcgagatt ctctatcggg ccgcgtcgcc
     2041 agcatgtggc gctactccga cgtgctgcca gcggtcgagc cggtgacgct gggcgaggga
     2101 ttcacgccga tgattcagag ccggcacaac ccgaacgtgt acatcaagga cgagggattg
     2161 aatcccaccg gctcgttcaa ggcgcgcggg ttgtgcgcgg cggtgacgat gtgcaaggcg
     2221 tacggcatcg acaagatcgc gattccctcg gctggcaacg ccgccagcgc acttgcggcc
     2281 tattgcgcgg cggccggcat cgaggcgcac atcttcatgc cgaaggacgt tccgatggcc
     2341 aaccgcgtgg agtgccagca gtacggcgcg cgcgtcacgt tcgtcgacgg gttgatcagc
     2401 gattgcgcga agatcgtaaa cgagcgcaag caggccgagg gctggttcga catctcgagc
     2461 ctcaaggagc cgttccgcgt cgagggcaag aagacgatgg gctacgaagt cgccgagcag
     2521 ctgggctgga agctgccgga cgcgatcttc tatccgactg gcggcggagt tgggcttatc
     2581 ggaatgtgga aggcgttcga ggagatgcag tatctgggct ggatcggcgc cgagcgtccg
     2641 aagatgattg ccgtgcaggc agcggggtgc gcaccgattc ccaaggcgtg ggacgagcac
     2701 aagccgacgt cggagttctg gcaggacgcg cacacgatcg ccgcgggact tcgggtgccc
     2761 aaggcgtatg ccgattacat catcctcaac atcattcggg acagcaaggg gacggcggta
     2821 acggcgaccg atgcggagat gctggacgcg gtgtcggcga tggcgtcgaa ggaaggggtg
     2881 ttcgctgcgc ccgagggagc ggcgacgctg gtcgcttacg acaagttgat cgcatcggga
     2941 ttcctcaagc cgagcgatcg ggtggtgctc ttcaacaccg gctcggggct caagtacatc
     3001 gacgtgatcg ggagcggcca ctgaggcagc gaaggcgtcg aatgtaatcc tggcgtcagc
     3061 ttcgcggtca tacctttgcg gctcgcattt cggtgcagcc ccatccccgc agaggttcgc
     3121 atgatccgtg tcactccagg tatccaggcc gtgttggctg ccgctttcgt tgcgctgcca
     3181 gccggcctgt cggcgcagtc atttacggtt cacaagtaca cgatcggcgg tgagggtggt
     3241 accgactacc tcaccgccga tcctgcatcc ggccgcgttt tcgtctcacg cggcacgcac
     3301 gtgatggttg tggatggaac aaccggaaag gtggtgggcg acattcccga cacgccgcgc
     3361 atgcacggta tcgcgctcgc accgaaatgg aatcacggct tcaccaccaa tgcgggcgat
     3421 tcgaccgtta cgatgttcga cctgaagacg ctcgccgtaa tcaagaagat ccacgcggga
     3481 atcgacggac tggacggcat catgtacgat gacgggaccg atcggatagt taccacggat
     3541 cacagtaatc ccatgggcac tgccgtggtg atcgatccaa aggatggcac cgtcgtgacg
     3601 accgtcatgc ttaccggccg tgggcccgaa ggcgctgtcg gcaacgcaaa gggaagaatc
     3661 ttcgtcaatc tcgaagacaa gaacgcgctc gacgtgatcg acacaaagac ctggaaggtc
     3721 gtcgcaacat ggccgattgc accgtgtgat ggtccgaccg gaattgcgat ggatcgcgcg
     3781 gccaaccgca tcttctcggg atgcggcaag acgtcagttg tcactgacgc atcgacgggc
     3841 aaggtggtag cgcagatccc gaacggtgat ggtgtcgacg cactgggctg ggatcaatcg
     3901 cagaagttga tgtacatacc cgctggccgt gatggcaacg tcaccgtggt gcacgaggat
     3961 tcgccggaca agtacacggt aatcgcaacc gtcgcgacgc agcctggtgc gaagacgata
     4021 acggtggatc cgaccactca catggcgtat ctcttccagc ccgaatatgg tccggcacca
     4081 gcgccggcgc cgggaaccgt gccggactcg aacccgcgcc gccggccgcg cggtccgatg
     4141 atcggaacgt ggtttatttc gatcgcgcat tgacgacgtt tgcgacgcgc cgaactggtg
     4201 gaatgcgttt ccgacgatac tatcggacgc gtccgattgg tggtcccgcg tacggcgcgg
     4261 attcatccgc gcgtggcccc gttacgtgca atcggattca aatcgatccc gcgtcccacg
     4321 gattcacaat cggaacgtcg taaccagaaa agtcacgaac attgcgcgtg acgactgaca
     4381 atcgatgcac aatcgccgtt gcgagaatca acccatccgg tgccgagagg ctccgctttg
     4441 tccgatgtgc ctgcgcggta agccccgccc acgcctcggc gatctcgacc gttatgtcaa
     4501 ccgttctatc agcgaagcgc tggatgacgt cacgtgcgag ccagtttcgg agttcggtac
     4561 gacggcctcc ctccggtagg agattgatgc cgtgcctgat ctctccgatc gtcatcacgc
     4621 ttattgcaca ttcttcggca ttgtttgcgc gggaccatgc cttgattccg ggcggcggaa
     4681 cgatcttgac caagtcagaa aggaaacagg tatcaagcag aaagcgtagc gaaaccatgc
     4741 gtcggctact cttcggagaa gtcgatttcg cgcatggggc ttcgatcacg ctcgatgtcc
     4801 aggtccacgc cgacgaaccc gggcggacgg agtgcgtcgt acagtgatct gaacggcttc
     4861 ctgtcgcgct cgtagtcgga agcgctcatg atgaccacag tgacgacccc gtgccgagtt
     4921 atcgtctgcg gtccgacttc tacagcgtcg cgcaccactt cgctaaaccg attcttcgcg
     4981 tcctgcaggg tccacacgtt gggtaccttc tcagccatgt tttgcctccc tctataaatc
     5041 tagctagcct gtctagcttg atctagcccg gagggtagaa cttcgtgc
//
LOCUS       DATIMD010000618         5678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4013602, whole genome shotgun sequence.
ACCESSION   DATIMD010000618 DATIMD010000000
VERSION     DATIMD010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5678
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4013602"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..1405)
                     /locus_tag="VLI40_13885"
     CDS             complement(125..1405)
                     /locus_tag="VLI40_13885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HSU98321.1"
                     /translation="MRFHTYSRFSPEMADAVDLQSLLDKMADFLLQSGFAGGENYNPY
                     WGMTGEDADRSVDALREAILNAMVESGQFTPEMLEALRGNGDEDAQEKLAKFLDELIE
                     RLTKEGYLNLEAPPQMPAGHQQVEGKGSLSHAAAKSVQFNLTDKGVDFLGYKALRHIM
                     SSLGKSSFGSHDTPYLATGIESDGWSKQYEFGDVLNLDVNETLKRSMARTGSLTVPMD
                     LDYDDLMVHQAEYRSSCATVLMLDTSHSMILYGEDRFTPAKKVALALTHLIRTQFPGD
                     TIRVVLFHDSAEEIPISALARAQVGPYHTNTAEGLKLARRILMAQKKDMRQIVMITDG
                     KPSALTLPNGQIYKNSMGLDMNVVSETLREVADCRRSGIVINTFMLARDRALVEFVKR
                     VSAIAKGKAYFTNTMTLGQFILMDFLRKKTRTVS"
     gene            1444..2667
                     /locus_tag="VLI40_13890"
     CDS             1444..2667
                     /locus_tag="VLI40_13890"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU98322.1"
                     /translation="MQKAAANNPFRPLKHRNFRIFWGGQTLSLIGTWMQSVGEGWLAL
                     QLSNSALMVGVVAGASALPVLLLSLYGGVVADRNDKLKLVKIAQSLLLVQASVLWWFT
                     ASHHLTVNWLIILATLNGTISAFEIPARQSFIVELVGREDLVDAIALNSAGFNLARVI
                     GPSVAAIVIGTLGPKWCFALNSMSYLAVLTGLFMIHVPKWERIETLVSPIEGMLEGFR
                     YMRDTPLVAVLVRVVGVTSVFGMPFLAMMPVVARDVVHAGASGYGILLACVGVGALIG
                     ALSMAALGQHIARGKLYVWSAYGFSVALMIFSLMNRLLPAAAILVFVGFAMLVMGALA
                     NGLLQSIAPDELRGRVVSAYVFVAVGLVPVGSFISGALAHVVGVDWAIGGCAVIVFAH
                     SAWAFAKNPALRTVR"
     gene            2674..>5678
                     /locus_tag="VLI40_13895"
     CDS             2674..>5678
                     /locus_tag="VLI40_13895"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSU98323.1"
                     /translation="MRKIVALAVIVLLATAGATRSAVAQGVDVIRGQVIGPDNLPMNN
                     VTVTATSVNGGVNRTARTDAGGRYTITFPGAEGDYFMSFTAIGYAPRRFELKRLADED
                     ILVADAEMARTLATLDTVHVSERDRVARDANKQPDISGTEQTITNEAVTPNEQGDLNA
                     LAGSIPGITSILGADGDPTGFSVLGLSADQNSITLNGSPFGGANLPRDANVSYSLVTA
                     PYDVSRGGFSGGQLNIRTGAGSNFIRRTMSLNMDAPQLQWTDPSARALGQQYTNVSLG
                     GSVAGPIVFDKAFYNLSYQLGQRSNDLRTLLNTSPIGLQASGISADSVRRLSSILGAE
                     GIPTVVNGRIPESSLRDNGSVFGSINLSPPNSSSAQTFNLTFSGNWNRQSPSDHSSTE
                     VPARDGDRTRLGGSVQLTHTAYLHTKILTESTVGVNANRSYGTPYLNLPAASVLVKSD
                     FADGTSGVQTIGFGGNPGLNTKSGSFNISGNNELSWFSKNNKHRIKLSTELERDAYSQ
                     DEVSNLLGSFYYNSLSDLEANMPASYTRSLLPRTQTGSQLTEAISLGDSYQRTRSLQL
                     QYGLRLDANQLAMAPVFNPAVQQAFGARNDAKPNRVYVSPRLGFSWTYGGAPQIAAFE
                     GAARAPRAVVRGGFGVFQNSPGASLIGSAIDNTGLPSAVQQLRCVGTATPTPDWAAYL
                     SDPGSVPSECADGTNGSVFASTVPNVTLFAKDFSTPRSARSNLQWNGPILTNRFSLTA
                     EGIYSRNLNQRSFIDLNFKPVTQFRLADEGDRPVFVQPASIVPATGTIASADARVSQS
                     FNHVSEQVSDMKSETRQIRLSLRPIKFSQNFTWNLTYVYSNNRQQFRGFNSTVGNPLD
                     VQWGRGDFDSRHQINYTLRYNFFDAVRVNWNGRFSSGGSFTPSISGDVNGDGYSNDRA
                     FIFDPSTASDPAVAGAMQALLKDGSRAARDCLSTQLGKLAAYGSCQGPWSSSANLTLA
                     LNPLKFRLPQRATLSFAVNNPLGAADILL"
BASE COUNT         1052 a         1709 c         1781 g         1136 t
ORIGIN      
        1 gcgggaatcc atctgctgcc gactaggttt gcgctgccat cgcactcaaa gatcgataac
       61 atggattccc gctttcgcgg gaatgacgag tctctgagcc agctttcgcg ggaatgacga
      121 gtctctacga aaccgttctc gtcttcttcc gcaggaaatc catcaggatg aactgaccga
      181 gcgtcatcgt attcgtgaaa taagccttgc ccttcgcaat cgccgaaaca cgcttcacga
      241 attcgaccag cgcccgatcg cgcgccagca tgaaggtgtt gatgacgatt cccgagcgcc
      301 ggcagtctgc gacttcgcgc agcgtctccg acacgacgtt catgtcgagg cccatcgaat
      361 tcttgtagat ctggccgttg ggcagtgtca gtgcgcttgg cttgccgtcg gtgatcatca
      421 cgatctggcg catgtccttc ttctgcgcca tgagaatgcg ccgcgcgagc ttgagacctt
      481 cggcggtgtt tgtgtgatac ggaccgacct gcgcacgtgc cagtgcggag atgggaattt
      541 cttctgccga atcgtggaac agtacgacgc ggatcgtgtc gccgggaaac tgggtgcgga
      601 tgaggtgcgt cagcgcgagc gcgaccttct tggccggcgt gaagcggtcc tcgccgtaca
      661 ggatcatcga gtgcgacgta tccagcatca gcacggtcgc acatgacgag cggtattcgg
      721 cctggtgtac catcaggtcg tcgtagtcca ggtccatcgg cacggtgagc gagccagtgc
      781 gggccatcga gcgcttgagg gtctcgttga cgtcgagatt gaggacgtcg ccgaattcat
      841 actgtttgct ccagccatcc gactcgatcc ccgtggcgag atacggcgtg tcatggcttc
      901 cgaagctcga cttgcccagc gagctcatga tgtgccggag ggccttgtag ccgaggaagt
      961 cgacgccctt gtcggtgaga ttgaactgga ccgatttggc agccgcgtgg gagaggctgc
     1021 ccttgccctc gacctgctga tggccggccg gcatctgggg cggcgcttcg aggttcaggt
     1081 agccttcctt tgtgagccgc tcgatcagct cgtcgagaaa ttttgcgagt ttttcctgtg
     1141 cgtcctcgtc accgttgccg cggagtgctt cgagcatctc gggggtgaac tggccgctct
     1201 cgaccatcgc attgaggatc gcctcgcgaa gagcgtccac cgagcggtcc gcatcctcgc
     1261 cggtcatccc ccagtagggg ttgtagttct cgccgccggc gaagcccgac tgcaggagga
     1321 agtcggccat cttatccagg agcgactgaa gatcgaccgc gtccgccatc tccggactga
     1381 acctggagta ggtatggaac cgcataactg aataatacac tccgtacgca atacatttcc
     1441 cgcgtgcaga aggccgccgc caacaacccg ttccgtccgc tcaaacatcg gaatttccgg
     1501 atattctggg gcggccagac gctgtcgctc atcggcacgt ggatgcaatc ggtgggcgag
     1561 ggatggctgg cgctgcaact gtccaacagc gcactgatgg tcggagtggt ggcgggggcg
     1621 tccgctctgc cggttctgct gctctcgctc tatggtggcg tggtcgcgga ccggaacgac
     1681 aagctcaagc tggtgaagat cgcccagtcg ctgctgctgg tgcaggcgtc ggtgctctgg
     1741 tggttcaccg cgtcgcatca tctcacggtc aactggctga tcattctcgc gactctcaac
     1801 ggaaccatca gcgcgttcga gattcccgca cggcagagct tcatcgtcga gctggtaggc
     1861 cgcgaggatc tggtcgatgc gattgcgctc aactccgcgg gcttcaacct cgcgcgggtg
     1921 atcgggccgt ctgtcgctgc aatagtcatc ggcacgctcg gccccaaatg gtgcttcgca
     1981 ctcaattcga tgagctatct cgcggtgctc accgggctgt tcatgatcca cgtcccgaaa
     2041 tgggagcgca tcgagacgct ggtgtcgccg atcgagggga tgctcgaggg cttccgctac
     2101 atgcgcgaca ctccgctggt ggccgtactg gtgcgcgtgg tgggagtgac gtcggttttc
     2161 ggaatgccat ttctggcgat gatgccggtt gtcgcgcggg acgtcgtgca cgcaggtgct
     2221 tccggttacg gaatcctgct ggcctgcgtc ggcgtcggcg cgctcatcgg cgctctctcc
     2281 atggcggcac tcggccagca catcgctcgg ggcaagctgt acgtatggtc tgcatatgga
     2341 ttctccgtgg ccctcatgat cttctcgctg atgaacaggc tgctgcccgc agcggcgatt
     2401 ctcgtgttcg tcggattcgc catgctcgtc atgggcgcgc tggcgaatgg attgctgcaa
     2461 tccatcgcgc ccgatgagct gcgcggcagg gtcgtatccg catatgtatt cgttgcggtc
     2521 ggtctggtgc cggtgggatc gttcatatcg ggcgccctgg cgcacgtggt tggcgtggac
     2581 tgggcaatcg ggggatgtgc cgtgatcgtc ttcgcccatt cggcatgggc attcgcaaag
     2641 aatccggcgc tgcggactgt ccgctaggtg agcgtgcgta agatcgtagc gctcgctgtg
     2701 atcgtcctgc tcgcgacggc cggtgcgacg cgaagtgcgg tggcgcaggg tgtcgatgtc
     2761 atccgcggtc aggtgatcgg gccggataat ctgccaatga acaacgtcac ggttacggcg
     2821 acgtcggtga atggcggagt gaaccgtacg gcgcgaacgg acgcgggtgg ccgttacacg
     2881 atcacctttc cgggcgccga aggcgattac ttcatgagct tcacggcgat cggctatgcg
     2941 ccgcgccgtt tcgagctcaa gcgtctggcc gacgaagaca tactcgtcgc cgacgccgag
     3001 atggcgcgca cgctcgccac gctcgatacc gtgcatgtct cggagcgcga tcgagtcgcg
     3061 cgcgacgcga acaagcagcc cgacataagc ggcaccgagc agacgataac caacgaagcg
     3121 gttacgccga acgagcaggg cgatctcaac gcgctcgcgg gctcgattcc cggaatcact
     3181 tcgattctgg gcgcggacgg cgatccaact ggtttttcag tacttggtct atctgccgat
     3241 cagaacagca taacgctcaa cggaagtccg ttcggagggg cgaaccttcc gcgcgacgcc
     3301 aacgtgtcgt attcactcgt gacggcaccg tacgacgtga gtcgcggcgg cttcagcggc
     3361 ggacagctga acatccgcac gggggccggc tcgaatttca ttcggcgcac catgtcactc
     3421 aacatggacg cgccccagct gcagtggacc gatccatccg cgcgtgcgct gggacagcag
     3481 tacacgaacg tatcgcttgg cggatctgtc gcgggaccaa tcgtcttcga caaggcgttc
     3541 tacaatctct cgtaccagct cggacagcga agcaacgatc tgcgcacgtt gctcaacacg
     3601 agtccgatcg gcctgcaggc gagcggaatc tccgccgact cggtgcgccg actcagcagc
     3661 attctcggtg cggagggaat tccgacggtc gtgaacggcc gcattccgga gagcagtctg
     3721 cgcgacaacg ggtcggtgtt cggcagcatc aatctgtcgc cgccaaactc gagcagtgcg
     3781 cagacattca atctcacgtt cagcggtaac tggaatcgcc agagcccgag cgatcactcg
     3841 tcgaccgaag tgccggcgcg cgacggcgat cgcacgcgcc tgggtggcag cgttcaactt
     3901 acgcacaccg cgtatctgca taccaagatt ctcaccgaga gcacggtcgg tgtgaacgcg
     3961 aacaggagtt acggaactcc gtatctgaac ctgccggctg caagtgtgct cgtcaagtcg
     4021 gattttgccg acggcacgag tggcgtacag acgatcggct tcggcggaaa tccggggctc
     4081 aacacgaaga gcggcagctt caacatttca gggaacaacg agctttcctg gttcagcaag
     4141 aacaacaaac accgcatcaa gctgtccacc gaactggagc gcgacgcgta cagccaggac
     4201 gaagtctcca atctacttgg atccttctac tacaattcgc tgtccgacct ggaggcgaac
     4261 atgccggcca gctacactcg ctcgctgttg ccgcgcaccc agaccggtag ccagctgacc
     4321 gaggcgatat cgctcggcga ctcgtaccag cgcaccaggt cgttgcagct gcaatacgga
     4381 ctgcggctcg atgcgaacca gctggcgatg gcgccggtgt tcaatcctgc cgtgcagcag
     4441 gctttcggag cgcgcaacga tgcgaagccg aatcgtgtct atgtgagtcc gcgacttggg
     4501 ttctcgtgga cgtacggtgg cgcgccacag attgccgcat tcgaaggagc ggcacgcgcg
     4561 ccgcgcgcag tggtgcgggg cggattcggt gtgttccaga attcgccggg cgcatcgctc
     4621 atcggctccg ccatcgacaa taccggattg ccgagcgccg tgcagcagtt gcggtgtgtg
     4681 ggtacggcga cgccgactcc ggattgggcg gcatatctga gtgatccagg cagtgtacct
     4741 tcggagtgtg cggacggcac caatggcagc gtattcgcga gcacggtgcc gaatgtcaca
     4801 ctgttcgcga aggacttcag cacgccgcgc tcggcgcgca gcaacctgca atggaacgga
     4861 ccgattctca ccaaccggtt cagtctgacg gcggaaggga tctactcgcg caatctgaac
     4921 cagcgcagtt tcatcgatct caacttcaag ccggtcacgc agttcagact ggcggacgag
     4981 ggcgatcgtc cggtcttcgt gcagccggcc agcatcgtgc cggcgaccgg cacgattgcg
     5041 tcggccgatg cgcgcgtgag tcagtcgttc aaccatgtga gcgagcaggt atcggacatg
     5101 aagagcgaga cgcgccagat ccggctctcg ctcagaccga taaagttcag ccagaatttc
     5161 acatggaacc tgacgtacgt gtattcgaac aaccgccagc agtttcgcgg cttcaacagc
     5221 accgtcggaa atccactgga cgttcagtgg gggcgcggtg atttcgactc gcggcaccag
     5281 atcaactaca ccctccgata taacttcttc gacgcggttc gggtgaactg gaacggccgc
     5341 ttctcgagtg gcggatcgtt caccccgagt atttcgggcg acgtgaatgg agatggttac
     5401 tcgaatgatc gcgcgttcat cttcgatccg tccacggcga gtgatcctgc cgtcgcgggg
     5461 gcgatgcagg cgttgctcaa ggatggctcc agggcggcac gtgattgtct ctccacgcag
     5521 ctcggcaagc tcgccgcata tggcagctgt caggggccgt ggtcatcaag cgccaatctc
     5581 accctcgcgc tgaacccact caagttccgt ctgccgcagc gcgccacgct ctccttcgcg
     5641 gtgaacaatc cactcggcgc ggcggacatc ctgctgca
//
LOCUS       DATIMD010000619         1687 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1134888, whole genome shotgun sequence.
ACCESSION   DATIMD010000619 DATIMD010000000
VERSION     DATIMD010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1134888"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1665
                     /locus_tag="VLI40_13900"
     CDS             <1..1665
                     /locus_tag="VLI40_13900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HSU98324.1"
                     /translation="TTKKPMSDSLKAMLAPRRNVVIDFDGLQQRVIPVSGIAERGYDQ
                     LRAGTAGTVFFMENVPKTGTADNPAFGAVLHRYELKDRKATDFLHDVQQFFVSADGKK
                     LLYRTPGPAGALFLVDAMSPTSPAAGKGKLNAQLSMLVDPKAEFKQIFDEGWRNQRDY
                     IYLKNLQGTDWPKMKEMYGQLLPYVMHRADLNYLLDMMGSEIAIGHSFVRGGDLPEVP
                     RVTVGLLGADFAVENGYYRITKIYGTDSWNPDLRAPLTAPGVDVHVGDYVLAVNGIDV
                     RAPESIYRAFDGTASHQTEVTVSARPTMDGARRVNVIPIANDAGLRARAWVERNRHIV
                     DSLSHGQLAYVHLPNTGEGGYTSFNRYYFAQQDRKGAIIDERYNGGGSAADYIIDVLQ
                     RTIDGYFNNPVGDRYPFTSPAAGIWGPKVMIINEMSGSGGDLMPYMFKLRGVGPLVGK
                     RTWGGLVGIWDTPLFVDGGIMYAPRGGFFRKDGKAWAVENEGISPNVEVENWPKDVAD
                     GHDAQLEQAVATAMKMLEEHPVDRATHEPPPAMWGKRVKPLVPNEP"
BASE COUNT          370 a          447 c          561 g          309 t
ORIGIN      
        1 acgacgaaga agccgatgtc ggactcgctc aaggcgatgc tggcaccacg ccgcaatgtg
       61 gtgatcgatt tcgacggctt gcagcaacgt gtaataccgg tgtcaggaat cgcagagcgc
      121 ggttacgatc agctgcgtgc aggtactgct ggtaccgtat tcttcatgga gaacgttccg
      181 aagacaggta cagcggacaa ccccgcgttc ggcgcggtgt tgcacaggta cgagctgaag
      241 gatcgcaagg cgactgactt cctgcacgac gtgcagcaat tcttcgtcag tgccgacggg
      301 aagaagttgc tgtaccgcac tcccggtccg gccggcgcgt tgtttctcgt cgatgcgatg
      361 tcaccaacgt cgcccgcggc cggaaagggc aagctcaatg ctcagctgag catgctcgtc
      421 gacccgaagg cggaattcaa acagatcttc gatgaagggt ggcgcaatca acgcgactac
      481 atctacctca agaatctgca gggaaccgac tggccgaaaa tgaaggagat gtatggtcag
      541 ctgcttccgt acgtcatgca ccgcgcggat ctcaactacc tgctcgacat gatgggttcg
      601 gagatagcga tcggccactc attcgtgcgc ggcggcgacc tgccggaggt gccgcgtgta
      661 accgttggtc tgctcggcgc cgacttcgcc gtggagaatg gctattacag aatcacgaag
      721 atctacggaa ccgacagctg gaacccggat ctgcgcgcgc cgctcacagc tccaggtgtg
      781 gacgtgcatg ttggcgatta cgtactcgcg gtgaatggaa tcgacgttcg cgcaccggaa
      841 agcatatatc gtgcgttcga cggaacagcg agccaccaga cagaggtgac cgtcagtgcg
      901 cgtcccacaa tggatggtgc gcgccgagtg aatgtgattc caatcgcgaa cgacgcaggg
      961 ctgcgcgcac gcgcatgggt cgagcgaaac cggcacatcg tcgattcgtt gtcgcacgga
     1021 cagcttgcgt acgtgcatct tccgaacact ggcgagggcg ggtacaccag cttcaacagg
     1081 tattacttcg cgcagcagga tcgcaagggc gcgatcatcg acgagcgata caatggtggc
     1141 gggtcggctg ctgattacat aatcgacgta ttgcagcgga cgatcgacgg atacttcaac
     1201 aatccagtgg gcgacagata tccgttcacg agtccggcgg cgggaatctg ggggccgaag
     1261 gtgatgatca tcaacgagat gtcgggatca ggcggcgatc tgatgcctta catgttcaag
     1321 ctgcgcggcg tcggaccgct cgttggcaag cgcacgtggg gcggactggt ggggatatgg
     1381 gatacgccat tgttcgtgga tggtggaatc atgtacgcac cgcgcggcgg gttcttcagg
     1441 aaggacggca aggcgtgggc ggtggagaat gaggggatct caccgaacgt cgaggtggag
     1501 aactggccga aggacgttgc ggatggacac gacgcgcagc tggagcaggc tgtcgcgacc
     1561 gctatgaaga tgctggagga gcacccggtg gatcgcgcaa cgcacgagcc gccgccggcg
     1621 atgtggggga agagggtgaa gccgctggtg ccgaacgagc cttgattttg ataacgcaca
     1681 acggatg
//
LOCUS       DATIMD010000620         2474 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4598575, whole genome shotgun sequence.
ACCESSION   DATIMD010000620 DATIMD010000000
VERSION     DATIMD010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4598575"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1421)
                     /locus_tag="VLI40_13905"
     CDS             complement(<1..1421)
                     /locus_tag="VLI40_13905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98325.1"
                     /translation="MDVARKAIPAEGITPDDAGTLRLVTLGRLALLQSNGEELPLLGH
                     KRKLALLAVLALTPGAINREELIAMFWAHDKNERSRRHSLSNSLSFLRGIIGAESIET
                     YRAHVTLGSRTLTADAVELLSAAQAEDHARVIQLYKGRFLEGVSISGSEPFDRWVERQ
                     RDVIEHAVSRAKDAPIRATSSARNSIGSSPHAAPAALPPTTAQSSVRIGDAAKMRAGE
                     TAHRFVHASRALMAVAALAFVAIIAAYTLLRSKPVVSARPLIAVTDIVNRQGDTASAW
                     LEDGLPQMISADLSATSAIEMIGPVRVRITRGRARLPLRGALSGAQALELGRRLGAST
                     IVRGEFTHRDGIYTLAISTHDVVSGRPDSHFTVTGTNPMTVAGLAAGRLLDVEGINGN
                     KPRFADVAMNNVAAYQHFVRSLHAESEGRFADSRRELDASIALDSGFATALSARSSIA
                     AAEGDTATVGRLARAMQHARRTP"
     gene            complement(1581..>2474)
                     /locus_tag="VLI40_13910"
     CDS             complement(1581..>2474)
                     /locus_tag="VLI40_13910"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HSU98326.1"
                     /translation="MIPAKLGGYGHIFAAVPREKLILSPAQYGSYATLALGSALALFL
                     YPHSITGVLSSDSRKVIKRNAAFLPIYSFLLGLIALLGFMALAAGIKPDPTYGAQYAV
                     PALFNMMFPPWFAGVAFSAIAIGALVPAAIMSIATANLFTRNIYREYFRPDATARQEA
                     RVAKAASLVVKFGALAFILLLENARQEAINFQLLGGVWILQTFPAIVFGLYTRWFHRW
                     ALLAGWAVGMIVGTIMAASQHFTAIFPLHIGGLLVPGYTAFYAFVANIIVTVVLTVVL
                     NMLGVSGGPDHTIAGDYVKER"
BASE COUNT          480 a          767 c          758 g          469 t
ORIGIN      
        1 cacggtgttc gacgggcatg ttgcattgca cgcgcgaggc gtccgaccgt tgcagtgtcg
       61 ccctccgccg ccgcgatgct cgatcgggcc gacagagccg tcgcgaaacc cgaatccagt
      121 gcgatcgatg catccagctc ccgtctgctg tcagcgaagc ggccctcgct ctccgcgtgc
      181 agcgagcgga cgaagtgctg atacgccgcg acgttgttca tcgccacatc ggcgaagcgc
      241 ggcttgttgc cgttgatccc ttcgacatcg agcagccgtc cggcggccag tccggcgact
      301 gtcatggggt ttgttcccgt tacggtgaag tggctgtccg ggcgtccgct cacgacatcg
      361 tgtgtactta tggccagcgt ataaatacca tcgcgatgcg tgaattcacc gcgtacgatg
      421 gtcgatgcac cgagtcgtcg accaagttcc agcgcttgcg cgccactcaa cgcaccgcgt
      481 agtggaagtc ttgcgcggcc gcgggtaata cgaacgcgca ccgggccgat catctcgatc
      541 gcagacgtag ccgacagatc ggcgctgatc atctgcggca ggccatcctc gagccatgcg
      601 gacgcagtgt cgccctgcct gtttacaatg tcagttaccg cgatgagtgg tcgcgcgctg
      661 actacgggtt tcgagcgcag tagcgtgtac gccgcgatga ttgcgacaaa tgccagggca
      721 gccaccgcca tcagagcgcg actggcatgc acgaagcggt gcgcggtctc gccagcccgc
      781 attttcgcgg cgtcaccaat ccgcacgctc gattgcgcgg ttgttggtgg cagcgccgcg
      841 ggcgccgcat gcggagagct gccgatgctg ttgcgcgcac tggaggtcgc tcgaatggga
      901 gcatccttgg cgcgacttac agcgtgctcg atcacgtcgc gttgcctttc gacccagcgg
      961 tcgaaaggct ccgagccgct gatggaaacg ccttcgagga aacgtccctt gtacaactgg
     1021 atgacgcgcg catggtcttc cgcctgcgct gcgctgagaa gctccaccgc gtcggcggtg
     1081 agcgtgcgcg atcccagcgt cacatgtgcg cggtatgtct cgatcgattc ggcgccgatt
     1141 ataccgcgca ggaacgacag ggaattgctc agcgagtgtc gtcgcgatcg ctcgttcttg
     1201 tcatgcgccc agaacatcgc gatcaactct tcccggttga tggcgcccgg cgtaagggcg
     1261 agcacggcca gcagtgccag cttgcgcttg tggccgagga ggggcagctc ctcgccgttg
     1321 gattggagaa gcgcaagacg cccgagggta accagtcgca gggtacccgc gtcgtccggg
     1381 gttattcctt ccgcaggaat tgctttccgc gccacgtcca tgtgtcagag cttccttggt
     1441 atttccgtcc ggcatccaac tgcatctgac gaaggtgcgt gaccttaaaa tatggccagc
     1501 tgcgggaaca cgcagccgtg acccccatcc agcgatcttg taaacgtttg tttatcaacc
     1561 ttggcgtgaa ttacagcgac tcagcgctcc ttcacgtaat cccccgcaat cgtatgatcc
     1621 ggaccaccgg acacgccaag catgttcaac acgacggtga gcacgacggt gacgatgata
     1681 ttcgcgacga aggcatagaa cgctgtatag cccgggacca gcaaaccgcc gatgtgcaac
     1741 ggaaagatcg ccgtgaagtg ctgcgacgcc gccatgatgg taccgacgat catccctacc
     1801 gcccatccgg cgagcagcgc ccaccggtga aaccagcgcg tatacaatcc aaaaacaatt
     1861 gctggaaacg tttgcaatat ccacacgccg cccagcaatt gaaagttgat cgcttcctgt
     1921 ctcgcgttct ccagcaggag aatgaatgcc agcgcgccga acttgacgac cagcgatgcg
     1981 gccttcgcca cgcgcgcttc ctggcgcgcc gtcgcgtctg gccggaagta ctcgcggtag
     2041 atgttgcgcg tgaacagatt cgccgttgcg atggacatga tcgccgccgg aacgagagcc
     2101 ccgatcgcga ttgcggagaa tgccactcct gcgaaccatg gcgggaacat catgttgaag
     2161 agcgccggca ccgcgtactg tgcgccgtaa gtcgggtccg gctttattcc ggccgccagc
     2221 gccatgaagc cgagcagcgc gatgagtccg agcaggaagc tgtatatggg aagaaacgca
     2281 gcgttgcgct tgatcacctt gcggctatcg ctgctgagca cgcctgtaat ggaatgcgga
     2341 tacagaaaca gtgccagcgc ggagccgagc gcgagcgttg cgtacgagcc gtattgcgcg
     2401 ggtgagagaa tcagcttctc cctgggcacc gccgcgaaga tgtgaccgta tccgccaagc
     2461 ttcgccggaa tcat
//
LOCUS       DATIMD010000621         1643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4313079, whole genome shotgun sequence.
ACCESSION   DATIMD010000621 DATIMD010000000
VERSION     DATIMD010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4313079"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..628
                     /locus_tag="VLI40_13915"
     CDS             <1..628
                     /locus_tag="VLI40_13915"
                     /inference="COORDINATES: protein motif:HMM:NF012500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98327.1"
                     /translation="ANALVQLKHEIEREGLARLTTLDLGGGLGVTDDDGSSLDLAAYA
                     DALRIAAAEPGVEILIEPGRFLVAESGVLVTRVLYRKHSGGKEIVITDAGMNDFIRPS
                     LYASHHAIDSASSGAEPSLRANIVGPVCESGDFFANDRLIADVAPGELLVLRATGAYG
                     YSMASNYNSRPRPAEVLVDGSRFAVITERESDADLTRRETFAPDWIED"
     gene            628..1116
                     /locus_tag="VLI40_13920"
     CDS             628..1116
                     /locus_tag="VLI40_13920"
                     /inference="COORDINATES: protein motif:HMM:TIGR00040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YfcE family phosphodiesterase"
                     /protein_id="HSU98328.1"
                     /translation="MRVGIIADTHDRVPAIAELVARMIGGGASLLMHAGDHCSPFSLT
                     PVNDANIPMLGVFGRNDGDPEGLAAVAAQGVGTELYESPHSFEVSGKQILIVHDIGEV
                     HQRSLDKHHFVFHGSSHQVEMKSRGDTLILNPGEACGWLYGSCTAALVDLDTREVEII
                     KL"
     gene            1124..>1643
                     /gene="guaA"
                     /locus_tag="VLI40_13925"
     CDS             1124..>1643
                     /gene="guaA"
                     /locus_tag="VLI40_13925"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HSU98329.1"
                     /translation="MNPERILILDFGAQYTQLIARRVREARVYCEIHPPTRSLEWVRE
                     WNPSGIIFSGGPNSVYGESAPTADPALLDVAPVLGICYGMQLIAQLSGATVLRAGKRE
                     YGRAEVCVTEPDALFAGFDGGECLEAWMSHGDHVESPPPGFSVTARSAANPVTAFRHD
                     ERPIFGVQFHPEV"
BASE COUNT          317 a          477 c          530 g          319 t
ORIGIN      
        1 cgcgaacgca ctcgtgcagc tcaagcacga gatcgagcgt gaaggcctgg cgaggcttac
       61 cacgctagac ctgggtggcg gcctcggcgt cacggacgat gatggatcgt cgctcgatct
      121 cgcagcatac gccgatgctc tgcgcatcgc cgcggcggag ccgggtgtgg agatactcat
      181 cgagccgggc cggttcctgg tcgcggagtc cggagtactt gtgacgcgag tgctgtaccg
      241 caagcacagc ggcggaaagg agatcgtcat caccgacgcc ggaatgaatg atttcatccg
      301 gccgtcgctg tacgcgtcgc accacgcgat cgattccgca tcgagcggcg ccgagccgag
      361 tctgagggcc aatatcgtcg gaccggtttg tgagagcggt gacttcttcg ccaacgatcg
      421 gctcattgca gatgtggcac cgggggagtt gctcgtgctg cgcgcgacgg gtgcatacgg
      481 atactcgatg gcctcgaatt acaattcgcg gccgcggccc gccgaagtac ttgtcgatgg
      541 cagtcgattt gccgtaatca ccgagcgaga atccgacgct gaccttacgc gccgcgagac
      601 attcgcgcct gactggatcg aggactgatg cgagtcggta tcatcgctga tacacacgac
      661 agggttcccg caattgcgga gctcgttgcg cgcatgatcg ggggcggtgc aagtctcctt
      721 atgcacgccg gagatcactg ttctccgttt tcgctcacac ccgtgaacga cgccaacatc
      781 ccgatgctcg gcgtcttcgg tcgcaacgac ggagatcccg aagggctggc cgccgttgcc
      841 gcgcagggag ttggaacgga gctgtacgaa tccccgcaca gcttcgaggt gtctggcaag
      901 cagatactca tcgtgcacga catcggtgag gtgcatcagc ggtcgctgga caagcaccat
      961 ttcgtattcc acggcagctc gcatcaggtg gagatgaaga gcaggggaga tactctgatt
     1021 ctgaatcccg gcgaggcgtg cggctggttg tacggatcgt gcacggccgc gctggtcgat
     1081 ctcgatacac gcgaagtgga aatcatcaaa ctttgagagc tggatgaatc cggaacgaat
     1141 actgattctt gatttcgggg cgcagtacac gcagctgatc gcgcgccgcg tgcgcgaagc
     1201 gcgggtgtac tgcgagatcc atcctcccac gcgatcgctc gaatgggtgc gcgagtggaa
     1261 tccttccgga ataatcttca gcggcggccc caattcggtg tacggcgagt ccgcaccgac
     1321 ggcagatccg gcgttgctcg acgtcgcgcc agtacttgga atctgctacg gcatgcaact
     1381 gatcgcgcag ctttcgggcg cgacagttct gcgcgctggt aagcgtgagt acggccgggc
     1441 tgaagtctgc gtcactgaac cagacgcgct attcgcgggt ttcgacggag gcgagtgcct
     1501 cgaagcatgg atgagccacg gcgaccatgt ggaatcgcca cctcctggtt tttcagtaac
     1561 agcgcgaagt gcggccaatc cagtgaccgc gttccgccat gatgaacggc cgatcttcgg
     1621 tgtgcagttc catcccgagg tcg
//
LOCUS       DATIMD010000622         5541 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2581416, whole genome shotgun sequence.
ACCESSION   DATIMD010000622 DATIMD010000000
VERSION     DATIMD010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5541
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2581416"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..559)
                     /locus_tag="VLI40_13930"
     CDS             complement(<1..559)
                     /locus_tag="VLI40_13930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98330.1"
                     /translation="MRQLSIPRGAAALSVALALVAPALAPALSAQQSCPAVEAGTTMP
                     LKYHGGSTVAAITPCDLMTRLYIYSDDSLRGREAGTPDAMHATAYIERQVRQLGLKPA
                     GDHGTYFQNMPVTARSVTSASTIAAGGKTFRVDRDFVLSAPATDHKVSAAVVFGGTLG
                     DTTKELTADQAKGKIVVMMAPAGGGR"
     gene            1093..4278
                     /locus_tag="VLI40_13935"
     CDS             1093..4278
                     /locus_tag="VLI40_13935"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HSU98331.1"
                     /translation="MADIFDRLQTTLSGSYVLERELGGGGMSKVFLADELRLGRKVVV
                     KVLSPELAAGISAERFEREIRLAASLQQANIVPLLSTGDTDGLPFYTMPFVEGESLRA
                     RLAHQPALQILDIVRILGDVSRALQYAHERGVVHRDIKPDNVLLSGGTAVVTDFGIAK
                     ALSASRTSGAGATLTQLGTSMGTPAYMAPEQAVGDPDTDARADIYALGCMAYELLAGH
                     PPFHDRSPQRVLAAQISETPKPIASIRPDAPTALCDLVMRCIAKDADDRPQSAAEVIL
                     ALNVATSGWGVPSLPPVLLQGPGAFRRALIGYAVAVIIVAIVVRAATITIGLPDWVMP
                     GALAVMALGLPVILFTGYVQRVTRRALTTTPAITAGGGHEVQHGTMATIALRASPHVS
                     WQRTTRGGVYALGAFAALVVAFMVMRAFGIGPVGSLLAEGRLAQRDPVLVADFATSHT
                     DSSVGHVVAEGVRQNLSQSNSITLFSQASVASALTRMQLPPTTQLTPTLARQLATREG
                     IKAFVTGDVTGLGNGFVIALRLVSADSGDVLASYQTTVDGPTQLVAGVDEVTRKLRGK
                     IGESLKNVQDSPPLAQVTTGSYEALRAYTEGAREFDEQQDYQKAIPLLHQAVTIDTGF
                     AMAWRKLAMAYGNGGYPQSVTSSAILKAFQLRSRLTDQERYMTEGTYYGFGAGMDRPK
                     SIAAYQALLATGNDSAYALNNLGVNYNSLRKFAQAEQAFRLSVRLSPNNSLASTNLAY
                     ALAVEGKNAAADSALATTLAKSPSNSGVLAAMVWTKYAEGNASAAEKLADSLDRTTAS
                     AELRQAVRNDRSSFALIHGRLMEGTRLYDESTAMQREAGLATTPPLTDSIAFVMLDWW
                     LRGQRDHALKRLDAVTSALPLTSLPELDRPYADLGVAYAALGRSDRARAVLAQIAQIA
                     DTVLRRNRQPATHRILAEIALAENRPRDAVTEFQKADSLPDGPVSEDPSTVLYNLGRA
                     FGKANAPDSAIAMFEQYVHCQTIDRLFNDPVYLPLAQLRLGELYEAKGDRTRAVAHYT
                     AFVDLWKNADPDLQPQVADVRKRLTRLSTEK"
     gene            4275..>5541
                     /locus_tag="VLI40_13940"
     CDS             4275..>5541
                     /locus_tag="VLI40_13940"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HSU98332.1"
                     /translation="MSARCTSADSISHITITPTPVVMRLPFRTIVPSLFAVLLLIPCG
                     SLTAQDTNTGAPFTYKEVMIPVRDGVRLQTVILAPVNQTGPLPILFRRTPYGVPAGPY
                     QQMPTNLRELAKDGYIFVIQNLRGRFKSEGTFLLSSQVDLNNPKSTNETTDAYDSIDW
                     LVKNVPNNNGKVGMYGVSYDGLTSALALLHPHPALKAISEQASPVDQWMNDDDHRYGA
                     LRLSYTFEYAVYEQADKFKNTHFDFDTYDGYSWYLNLGPISNINAKYLHGSIPYWNDV
                     VKHPDYDAFWKREAWVNQLHASTVPNLNIAGFFDQEDPWGPWQIFRHAGEHDPDNTNF
                     IVAGPWYHGEWQSPKGDSIGAIPLGGHETAREFRENIEAPFFRYYLHGEGAKPTWKAT
                     TFQSGSNSWHTYATWPAPGARNTNLYLHSD"
BASE COUNT         1071 a         1749 c         1682 g         1039 t
ORIGIN      
        1 cgcgtccgcc acctgctggc gccatcatca caacgatctt gcccttggcc tgatccgcag
       61 tgagctcctt tgtcgtatcg ccgagcgttc caccgaagac gactgcggcg gacaccttgt
      121 ggtcagttgc cggagctgag aggacgaagt cccggtcgac gcggaaagtc ttgccgccgg
      181 cagcgatggt cgatgcggac gttacgctgc gcgccgttac cggcatgttc tggaagtagg
      241 tgccgtgatc gccggcgggc ttgagaccca gctgtcgcac ctggcgctcg atgtacgcgg
      301 tcgcgtgcat cgcgtccgga gttcccgctt cgcgaccgcg gagcgagtca tccgagtaga
      361 tgtacagacg cgtcatgagg tcgcacggcg tgatggcggc gaccgtggat ccgccgtgat
      421 acttgagcgg catggtcgtg ccggcctcga ccgccggaca gctttgctgc gccgagagtg
      481 ccggcgccag cgcgggcgcg acgagtgcaa gcgccacgga caatgccgcc gcgcctcggg
      541 gaatggagag ttgtctcact gatttctcac acgggaggtt taagggctga ttgatgccca
      601 tgcaaaacat acgtgtgacg cccgggagtc gttcgaggat cggcgaggat cagggtcagg
      661 tcttgccccg tgcgcggttc ccgggcattg cagcctttcg ctacatcacg cagaccgcgc
      721 acggggcaag acctgacccc ccatatgtcg atgcgcgtcg tcagctcata cttcgacgag
      781 tcacagcttc agcccaaaac ccggctcgca ctcgaagaat tgctgtcggg ataacacacg
      841 tcagttccgc cagtgtccgt gcgcggcgcc cgggcgcctt gcccagactg aaatacgggt
      901 tgccatgctc gacatcatgg gcgagcggcc acatgtgact ggtttgtgac tggttgacgg
      961 cgacgccttc cgacctggca acgatgccgt gagaaaccgc tgtctcggcg cgctcgatgt
     1021 ctctgtctgg cgcccgcagc agcaggtcgt agattcgttt agcgttcgcc cccctaaatc
     1081 cgctgtcgcc acatggctga catcttcgac cgactacaga cgactctctc aggctcctac
     1141 gtcctcgaac gcgagctcgg cggcggcgga atgtcgaagg tcttcctcgc ggacgagctc
     1201 cggctgggcc gaaaggtcgt cgtcaaggtc ctctcacccg agcttgcggc tggaatcagc
     1261 gccgagcgct tcgagcggga gatcaggttg gccgcgtcgc tgcagcaggc gaacatcgtg
     1321 cctctcctct cgaccggtga tacggacggg ctgccgttct acacgatgcc gttcgtcgaa
     1381 ggcgaatcgc tgcgcgcgag gctcgctcac cagccggcgc tccagatact cgacatcgta
     1441 cgaattctcg gtgacgtgtc acgcgcactt caatacgcgc acgaacgcgg cgtggtgcat
     1501 cgcgacatca aaccggacaa cgttctcctg tcgggcggta cggcggtcgt caccgacttc
     1561 ggaatcgcga aggcactgag tgcatcacgt acaagcggcg ccggtgcaac gctcacgcag
     1621 ctcggtacgt cgatgggcac gcccgcttat atggcgccgg agcaggcggt cggtgatccg
     1681 gataccgatg cgcgcgcaga catctacgcg ctcggctgca tggcgtacga gctgcttgcc
     1741 ggtcatccgc cgttccacga ccgctcgccg caacgcgtgc tcgctgcgca gataagcgag
     1801 acaccgaagc cgatcgcatc catcagaccg gacgcgccaa ccgcgttgtg cgatctcgtc
     1861 atgcgatgca tcgcgaagga cgccgacgac aggccgcaga gcgcggctga agtgatactc
     1921 gcgctcaacg tcgcgacgag cggctgggga gtgccgtcgc ttccgccagt gctgttgcaa
     1981 ggtcctggcg cgttccgccg cgcgctcatc ggctatgcgg tggccgtcat catcgtagcg
     2041 atcgtggtgc gcgctgcgac gataacgatc gggctgcccg actgggtgat gcctggcgcg
     2101 ctcgccgtga tggcgctcgg actaccggtg atccttttca ccggctacgt gcagcgcgtt
     2161 acgcgccgcg cgctcacgac gactcccgcg ataacagcag gcggtggaca cgaggtgcag
     2221 cacggcacta tggccacgat cgcgttgcgc gcgagtccgc acgtctcatg gcagcgtacg
     2281 acgcgtggcg gtgtgtacgc gctcggagca ttcgcggcgc tcgtcgtcgc gttcatggtc
     2341 atgcgcgcgt tcggaatcgg gcccgtggga tcgcttctcg ccgagggccg gcttgcacag
     2401 cgcgaccccg ttctcgttgc cgacttcgcc acgagccaca ccgattcgag tgtgggacac
     2461 gtggtcgccg aaggcgtgcg ccagaatctc agccagtcga attcaataac gttgttcagc
     2521 caggctagtg ttgcgtcggc actgacacgc atgcaactgc cgccaaccac ccagctgaca
     2581 ccaacgctcg cgcgccagct cgcaacgcgt gaaggcatca aggcgttcgt cactggcgac
     2641 gtgacgggac tcggcaacgg attcgtcatt gcgctacggc tcgtttccgc ggattccggc
     2701 gatgtgctcg cctcgtatca gacaaccgtc gacggcccga cgcagctcgt tgccggtgtt
     2761 gacgaagtga cgcgcaagct gcgcggcaag attggcgagt cgctcaagaa tgtgcaggac
     2821 agtccgccgc tcgcgcaggt caccaccggt tcgtatgaag cactcagagc ctacacggaa
     2881 ggcgcgcggg aattcgacga gcagcaggat tatcagaagg caattcctct cctgcatcag
     2941 gccgtcacca tcgatacggg ttttgcaatg gcctggcgga aactcgccat ggcctacggc
     3001 aacggtggat atccgcagtc ggtgacctcg tccgcaattc tcaaggcatt tcagttacgg
     3061 tcgcgcctca cggatcagga acggtacatg accgaaggga cctactacgg gttcggcgca
     3121 ggcatggaca ggccaaagag catcgccgcg tatcaggcgt tgcttgcgac gggtaatgat
     3181 tcggcatacg cgttgaacaa tctcggcgtg aactacaaca gcctccgcaa gttcgcgcag
     3241 gcggagcagg cgtttcgcct gtccgtacgc ctgtcaccga ataattcgct cgcatctacg
     3301 aatcttgctt acgcgctggc cgtggaagga aagaatgcgg ctgctgattc ggcgcttgcc
     3361 accacgttgg ccaaaagccc gtcgaattcc ggagtactcg cggcgatggt atggacgaag
     3421 tacgccgagg gaaatgcctc ggctgctgaa aaacttgcag acagtctcga caggactacc
     3481 gcgagcgcag agctgcggca ggccgtgcgg aacgacaggt catcatttgc actcattcat
     3541 ggcagactca tggaggggac acgattgtat gacgagtcta ccgcgatgca acgcgaagcc
     3601 ggtctcgcta ccactccgcc actcaccgac tcgattgcgt tcgtaatgct ggactggtgg
     3661 ctccgcggtc agcgcgatca tgcgttgaaa cggctggacg cggtgacttc tgcgctaccc
     3721 cttacatcgc taccggagct ggaccgtcca tatgccgacc tcggcgtcgc ctacgctgcc
     3781 ctgggacgta gcgatcgcgc gcgcgctgtt cttgcgcaga tcgctcagat cgcagatacc
     3841 gtgcttcggc gaaatcgtca gcccgctacg catcggattc tggccgagat tgcgctcgcg
     3901 gagaatcgac cgcgcgacgc ggtcaccgaa tttcagaaag cggatagtct tcctgacggc
     3961 cccgtctcgg aagacccatc caccgtgctg tacaacctcg gtcgcgcatt cggcaaggca
     4021 aacgcgccag attccgcgat agcgatgttc gagcaatacg ttcattgcca gactatcgac
     4081 agacttttca acgatcctgt gtatctgcct ctggcgcagc tacgactcgg cgagctgtac
     4141 gaagcgaaag gtgatcgcac gcgcgcggtc gcgcactaca ctgcctttgt cgatctctgg
     4201 aagaacgccg atcctgacct gcagccacag gtggcggacg taagaaagcg actgacgaga
     4261 ctttcgacgg agaagtgagc gcgcgctgca cgagcgctga ttccatttcc cacatcacga
     4321 tcaccccaac tccggtcgtc atgcgcctcc cgttccgcac gattgtcccg tcgcttttcg
     4381 ccgtcctgtt gctcatcccg tgcggctcgc tgactgcgca ggacacgaac accggcgctc
     4441 cgttcactta taaggaagtg atgattcccg tgcgcgacgg tgtgcgtctg cagaccgtga
     4501 tcctcgcgcc ggtaaatcag accggaccgc tgccgattct cttccggcgc actccatacg
     4561 gcgtgccagc cggtccctac cagcagatgc ccaccaatct tcgcgagctc gcgaaagacg
     4621 gttacatctt cgtcatccag aacctgcgcg gtcgattcaa gtcggagggc acgttcctgc
     4681 tctcgtcgca ggtggacctg aacaatccaa agtcgacgaa cgaaaccacc gatgcatacg
     4741 acagcatcga ctggctcgtg aaaaacgtgc cgaacaacaa cggcaaggtc ggaatgtacg
     4801 gcgtgtcgta cgatggtctc acttcggcgc tcgcgctgct gcatccgcat cctgcgctca
     4861 aagcgatcag cgagcaggcg tcgccagtgg atcagtggat gaacgacgac gatcaccgct
     4921 atggcgcgct gcgactgagc tacacgttcg agtacgcagt gtacgagcag gctgacaagt
     4981 tcaagaacac gcacttcgat ttcgatacgt acgacggcta ctcctggtat ctcaacctcg
     5041 gcccgatctc caacatcaat gcgaagtatc tgcacggctc cattccatac tggaacgatg
     5101 tagtcaagca tcccgactac gacgcgttct ggaagcgcga ggcatgggtg aaccagctgc
     5161 acgcctctac agttccgaat ctgaacatcg ccggcttctt cgatcaggaa gatccgtggg
     5221 gtccgtggca gatattccgc cacgctggag agcacgaccc ggacaacacc aacttcatcg
     5281 ttgccggacc ctggtatcac ggcgagtggc aatcaccgaa gggtgacagc ataggcgcga
     5341 ttccactcgg cggccacgaa actgcgcgcg aattccgcga gaacatcgag gcgccgttct
     5401 tccgttatta tctgcacggc gagggcgcga aaccaacgtg gaaggcgacg acgttccagt
     5461 cgggatcgaa cagctggcac acttatgcga cgtggccggc gccgggtgcg cggaacacca
     5521 atctttatct gcactcggac g
//
LOCUS       DATIMD010000623         5747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1429304, whole genome shotgun sequence.
ACCESSION   DATIMD010000623 DATIMD010000000
VERSION     DATIMD010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5747
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1429304"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..1410)
                     /locus_tag="VLI40_13945"
     CDS             complement(109..1410)
                     /locus_tag="VLI40_13945"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HSU98333.1"
                     /translation="MAVLRYAAEIVAIVVVLAMVLIGVLSVTHGTPVRTVISPGTSDR
                     PPAVGDSLFAEAMELYTSTHFSRGNSVTLCLNGAGTYPRLWNDISSAKHTLTVQMYYS
                     EPGKVANEMRDRLAERARAGVRVLVLLDAFGSGPLRKTDFVDKLRAAGARVAWLRSIR
                     WYTLNRAATRSHVRVVVIDGHIGYTGGFGLADYWQGDGHDDRQWRESNVRFEGPAVAS
                     LQAAFAAGWAEATGVLLTGDTFFPPAIFEPVGNTVAGLMYTIPAVGSTIAERFLALTI
                     ASAQKTLYITNSYFVPDAEFRKMLIDAVKRGVDVRVITAGDKSDVKTTVFAGRAYYDE
                     LLRGGVHIYEYTPTMMHAKTLVADGLWSSVGSMNFDNRSLAFNNESNLNVLDAGFGAQ
                     MDSVFTDDLKYSKEIKLPEWDHRPFYEKAIEWGAEKLWRVL"
     gene            1559..2422
                     /locus_tag="VLI40_13950"
     CDS             1559..2422
                     /locus_tag="VLI40_13950"
                     /inference="COORDINATES: protein motif:HMM:NF021637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiator protein A"
                     /protein_id="HSU98334.1"
                     /translation="MAAPGRRPTSKTVALDRSLEALPLFRLSDSADEGAITYAPSDGG
                     RWRVLPAPGDRLPGTFDQDVYVEILHRFGEAGFPADGVVRFTLHSFLRSIGRKVDGRT
                     YEQLRSALNRLERTRLESSGAYHLWSDRSERPFEGTFTILSSVTIERRRLTDRNQLAL
                     FSALSASEPGDARVVVSPQLRANIAAGNTISLSLQHYGSLSNPVARRLYRLLATARSQ
                     DHITWRISLGALASQLPLTQRYPSHLQRVLQPAHEMLIAAGLLRDASFHQLDREWHVD
                     YVLATRNTIAP"
     gene            2481..4034
                     /locus_tag="VLI40_13955"
     CDS             2481..4034
                     /locus_tag="VLI40_13955"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSU98335.1"
                     /translation="MLPLIAGAFVYQQHENVASAQLLDEVLRITASRYVDSVGSNSLY
                     EKAATGLVKELNDPYSVLFNKKEWDQFSQQTGGKYGGIGMEIAPTSGFITVQRVFPHT
                     PAAAGGVMEGDKILQIDTANARGWTSTQVSDKLKGDPGTKVSVKFGRAGVTDPIPVTF
                     TRAIVHIPAVPYTLVFGNVGYIPLQQFNETATQEVSDAITDVTKAGANRIVFDMRGNP
                     GGFLDQAISTSNLFLPQGQSILSVRGRTGEVEAYSATDAPKEPKIPIVVLVDGHTASA
                     SEIVAGSLQDHDRALIMGTTSFGKGLVQSLFKLDGGYALKMTTAKWYTPSGRSIQKER
                     KLLPDGEFVEVMPDSLETDSARRARPKYKSDAGRIVYGGGGITPDIIVKPDTLSTPEQ
                     NLLKSLAPKSQIFAQAMQDFAAEMKDKVKPNFTVTPEMRNSFLAQLKKKGVTVDSTLL
                     AKGAGTELDRIIGQRITTMAFGDSAARRKYLSDDNQLEKAIATLKSVQNTQGLFALAQ
                     KAQGVASNR"
     gene            4054..5187
                     /locus_tag="VLI40_13960"
     CDS             4054..5187
                     /locus_tag="VLI40_13960"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HSU98336.1"
                     /translation="MTDEPEARAAEVGVMRHSLSLAILAVLAVVYTLYFGRAFFIPIF
                     FAVELSFLLSPAIRWARRVLHFPAPLAAGILILALAGGLGLGIYELAAPAQGWLTSAP
                     TTLKQAGDKLHKIMKPMEQVSRTAEQMDRVSIVPSGGGSQPRTVVVAGPSMGSRFFGT
                     TQSVVGALLEVLVLLFFLLAAGDLFLQKTIKVAARPASQRVAVEVARQIEGSISRYLV
                     TSALLNLVEGAVFTGIMYLLKMPNPFLWGALVACLEFIPYIGALTIVAILTIASLTVF
                     DNVAHAVLVPASFVAVNLIQGNLIGPMVMGHRLSLNPVAIFIGVAFWWEIWGIAGAFI
                     AVPMLASLKIVCDHVVWLEGVGEFLGQRDKDERRVVVRPATTT"
     gene            5191..>5747
                     /locus_tag="VLI40_13965"
     CDS             5191..>5747
                     /locus_tag="VLI40_13965"
                     /inference="COORDINATES: protein motif:HMM:TIGR02453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2461 domain-containing protein"
                     /protein_id="HSU98337.1"
                     /translation="MATTSKGSSKGSTRTASSRTTGKAISGTPEKFTGFRPAALTFLR
                     SLARNNKREWFEANKSRYESEVKRPLQVLVEEIDARLGEIAPEMVGNPKRSIFRIYRD
                     VRFSKDKSPYKTNAAAWFYHRDAGHAVGTAAVHGGAGFYFQIAPGECMVAGGIWMPPG
                     AALKTLREAIAGDPDELRSILRQAA"
BASE COUNT         1131 a         1754 c         1769 g         1093 t
ORIGIN      
        1 ggtcgccgct cgcgattacc ggccatcctt gaatttgagg cggcgacggt gcgcccaggg
       61 tttcggtgaa ccactcgcga acgatgggat ggaaactcgc gagcggcttt acagaacgcg
      121 ccacaacttc tccgcgcccc actcgatcgc cttctcgtag aacggtcggt gatcccactc
      181 gggcagcttg atctctttcg aatacttgag atcgtccgtg aagaccgaat ccatctgcgc
      241 accgaatcct gcgtccagca cgttgaggtt ggattcattg ttgaatgcca gcgagcggtt
      301 gtcgaagttc atggatccca ccgatgacca cagaccgtcg gcgacgagtg tcttggcgtg
      361 catcatcgtg ggagtgtact cgtagatgtg cacaccgccg cgcaggagct cgtcgtaata
      421 tgcgcgcccg gcgaacaccg tggttttcac gtcgctcttg tcgccggcgg tgatcacacg
      481 cacatccacc cctcgcttca cggcatctat cagcatcttg cgaaattcgg cgtccggcac
      541 gaagtacgaa ttggttatgt agagagtctt ctgcgcgctc gcgatcgtga gcgccaggaa
      601 acgctccgcg atcgtactgc ctaccgccgg aatcgtgtac atcaatcctg ccaccgtgtt
      661 gccaacaggc tcgaagatcg ccggcggaaa gaacgtgtcg cccgtgagca acactcccgt
      721 cgcctcggcc catcccgcgg cgaacgctgc ctgcagtgac gcgaccgccg gtccctcgaa
      781 ccgtacgttc gactcgcgcc actgtctgtc gtcgtgacca tcgccctgcc agtaatcggc
      841 gagaccgaag ccgcccgtgt atccgatgtg gccgtcgatc accaccacac gcacgtgcga
      901 gcgcgtcgcc gcgcgattga gtgtgtacca tcggatactc cggagccacg cgacacgcgc
      961 acccgcggcg cgcagcttat cgacgaaatc cgtcttgcgc agcggacccg acccgaacgc
     1021 gtcgagcagc accagtacgc gaactcctgc gcgcgcacgc tccgccagcc gatcgcgcat
     1081 ctcatttgcg accttgccag gctcggagta atacatctgc accgtgagtg tgtgcttcgc
     1141 cgatgatatg tcgttccaca atcgcggata cgtccctgcg ccgttcagac agagcgtgac
     1201 tgaattgccg cgcgaaaagt gggtgctggt gtacagctcc atcgcctccg cgaagagcga
     1261 gtcacccacc gccggcggcc ggtcggatgt accgggtgag attacagtac gaacgggcgt
     1321 cccgtgcgtg accgagagaa cgccgatcag gaccatcgcg agcaccacga ctatcgcgac
     1381 gatctcggcg gcgtacctca gaacggccat cagggattca tctcgcggct ggtggatgat
     1441 ctactctcca attgcccggc ggcgcgccag ggaccatcaa tccctattca cttcccgttc
     1501 cacttcggtt tgccctcttc cacgtatgcc ggtatcgcct attctataag gtatgcatat
     1561 ggcagcgccc ggccgccggc cgacgagcaa gacagtcgcc cttgaccggt cgctcgaagc
     1621 cctccccctc ttccgactca gcgactcggc ggacgaaggc gcgataacgt acgccccttc
     1681 cgacggcgga cgctggagag tgctgcctgc acccggagac aggctaccgg gtacctttga
     1741 tcaggatgtt tatgtcgaga tcctgcaccg cttcggcgag gcaggcttcc cggccgacgg
     1801 cgtggttcgc ttcacgctgc actcgttcct ccggtcgatc ggccgaaagg tggatggccg
     1861 cacctacgag cagctccgat ccgcgctgaa ccgcctggag cggacgagac ttgaatcgag
     1921 cggcgcatat cacctctggt ccgatcgatc cgaacgaccg ttcgaaggca ctttcacgat
     1981 tctcagctcg gtcacgatcg agcgacgccg gttgaccgat cgcaatcagt tggcgctttt
     2041 ctcagcactt tcggcctcgg agcccggcga tgcccgggta gtcgtatcgc cacagcttcg
     2101 cgccaacatc gcggctggca acaccatctc gctatcgctc cagcactatg gcagtctgtc
     2161 caacccggtc gctcggcggc tttaccgtct gctggcgacc gccagatcgc aggaccacat
     2221 cacctggcgc atatccctcg gagcactggc ttcgcaattg cctctcactc agcgatatcc
     2281 ttctcatctg cagcgggtgc tccagccggc gcatgagatg ctcatagctg cgggactcct
     2341 gagagacgca tcgtttcacc agctcgaccg tgagtggcac gtcgactacg tgctggcaac
     2401 acggaacact atagccccgt agttttacaa ccactatgcg taaacctcgc gttctacatc
     2461 tggccgtcct cgggacggtc atgcttcccc tcattgcagg ggcctttgtc tatcaacagc
     2521 acgaaaatgt cgccagcgct cagctgctcg acgaagtgct caggatcact gcctcgcgct
     2581 acgtcgatag cgtcggctcc aactcactct acgagaaggc cgccaccggc ctcgtgaagg
     2641 agctgaacga tccctattcg gttctgttca acaagaagga atgggaccag ttcagccagc
     2701 agactggcgg caagtacggc ggaatcggca tggagatcgc gccgaccagc ggcttcatca
     2761 cagtgcagcg cgtattcccg cacacgccgg cggccgctgg cggagtgatg gaaggcgaca
     2821 agatcctgca gatcgatacc gcaaacgcgc gcggctggac cagcacccag gtgtccgaca
     2881 agctcaaggg cgatcccggc accaaggtga gtgtcaagtt cggacgtgcc ggtgtcaccg
     2941 atccgattcc cgtgacgttc acgcgcgcaa tcgtacacat ccccgccgta ccatacacgc
     3001 tcgtgttcgg aaacgtcggc tacatcccgt tgcagcagtt caacgagacg gcgacgcagg
     3061 aagtgagcga cgcgatcacg gacgtcacca aggccggtgc gaatcgcatc gtcttcgaca
     3121 tgcgcggcaa tcctggcggc ttcctggacc aggcgatctc caccagcaac ctgttcctcc
     3181 cgcagggcca gtccatactc agcgtccgcg gacgcacggg tgaagtcgag gcatacagcg
     3241 cgaccgatgc gccaaaggag ccgaagatcc cgatagtcgt gctcgtcgac ggccacacgg
     3301 catcagcgtc ggagatcgtt gcaggctcgc tgcaggatca cgaccgtgcg ctcatcatgg
     3361 gcaccacatc gttcggaaag ggactggtgc agagcctctt caagctggat ggtggctacg
     3421 cgctcaagat gacgactgcc aagtggtata cgccgagcgg acggtcgatt cagaaggagc
     3481 gcaagctgct tcctgacgga gagttcgtcg aggtaatgcc agactcgctc gagaccgact
     3541 cggcgcgtcg cgcacgtccc aagtacaaga gcgatgcagg tcgcatcgtg tacggcggtg
     3601 gcggcatcac gcctgacatc atcgtcaagc ccgacacgtt gagcacaccg gagcagaacc
     3661 tgctcaagag cctcgcgccg aagtctcaga tctttgcgca ggcgatgcag gattttgccg
     3721 ccgagatgaa ggacaaggtg aagcccaact tcacggtgac accggagatg cggaacagct
     3781 tcctcgcgca gttgaagaag aagggcgtga ccgtcgattc gacgttgctc gcgaagggcg
     3841 ccggcaccga gctcgatcgc atcatcgggc agcgcatcac gacgatggca ttcggcgatt
     3901 ccgcggcaag gcgcaagtat ctcagcgacg acaatcagct cgagaaggcg attgcaacgt
     3961 tgaagagcgt acagaataca cagggacttt tcgctctggc gcagaaggct cagggcgtgg
     4021 catccaaccg gtaacgcgca tcgataacgc gccgtgacag acgaacctga agcgcgcgcg
     4081 gccgaagtcg gcgtgatgcg ccactcgctg agccttgcaa ttcttgcggt gctcgcggtg
     4141 gtctacacgc tctactttgg ccgcgcgttt ttcataccca tattcttcgc ggtcgagctg
     4201 agctttctgt tgagtccggc gatacgctgg gcgcggagag tgctgcactt ccctgcaccg
     4261 cttgcagcgg ggatactgat actcgctctc gccggcggac ttgggctcgg catctacgag
     4321 cttgcagcac cagcgcaggg ctggctcacg tcagcgccga cgacgctcaa gcaggccggc
     4381 gacaagcttc acaagatcat gaagccgatg gagcaggtat cgcgcaccgc cgagcagatg
     4441 gacagggtga gtatcgtgcc gagcgggggt gggtcgcagc cgcgaacggt ggttgttgca
     4501 gggccgagca tgggctcgcg ctttttcggg acgacgcaga gtgtggtggg agcgctgctc
     4561 gaggtgctcg tgctgctctt cttcctgctg gccgccggcg atctctttct gcagaagacg
     4621 ataaaggttg cggcgcgacc ggcgagccag cgagtggcgg tggaagttgc gcgacagata
     4681 gaaggatcga tctcgcgcta tctcgtgacg tcggcgctgc tcaatctcgt ggagggagca
     4741 gtgttcaccg ggatcatgta tctgctcaag atgccgaacc cgttcctgtg gggggcgctc
     4801 gtagcatgtc tcgagttcat accgtacatc ggcgcgctca ccatcgtcgc aatactgaca
     4861 atcgcgtcgc tcacggtgtt cgacaacgtg gcgcatgcgg tactggtgcc tgcgagcttc
     4921 gttgcggtga acctgatcca ggggaatctc atcgggccga tggtgatggg gcatcgactg
     4981 tcgctgaatc cggtcgccat attcattgga gtggcgttct ggtgggagat ctgggggatc
     5041 gcgggcgcat ttatcgcggt accgatgttg gcgtcgctca agatcgtgtg cgatcatgtc
     5101 gtgtggctgg agggagttgg tgaattcctg gggcaacgcg acaaggacga gcggcgggtg
     5161 gtggtgcgac cggcaacaac aacgtgagag atggcgacta caagcaaggg atcaagcaag
     5221 ggatcaacca ggacggcaag tagcaggacg acgggtaaag cgataagcgg cacacctgag
     5281 aagttcaccg gattcagacc ggcggcgctg acgtttctgc ggagtcttgc gcggaacaac
     5341 aagcgtgagt ggttcgaggc gaataagtcg cgatatgaat ccgaggtgaa acgcccgctg
     5401 caggtgctgg tcgaggagat cgacgcgcgg cttggcgaga tcgcgccgga gatggtgggg
     5461 aatccgaaac gctcgatctt ccgcatctac cgcgacgtgc ggttctcgaa ggacaagtcg
     5521 ccgtacaaga ccaacgctgc ggcgtggttc tatcatcgtg atgcggggca tgctgttggt
     5581 actgctgccg tgcacggtgg agcgggattc tattttcaga tcgcgccggg ggagtgtatg
     5641 gttgcgggtg ggatctggat gcctcccggg gctgccttga aaacgctgcg cgaagcgatc
     5701 gcgggtgatc cggatgagct tcgatccata ctgcggcagg ctgcatt
//
LOCUS       DATIMD010000624         2653 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2870241, whole genome shotgun sequence.
ACCESSION   DATIMD010000624 DATIMD010000000
VERSION     DATIMD010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2653
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2870241"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..457)
                     /locus_tag="VLI40_13970"
     CDS             complement(<1..457)
                     /locus_tag="VLI40_13970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family peptidase"
                     /protein_id="HSU98338.1"
                     /translation="MNRFVTAFATVMFAAASAGAQRATQPTRSTLPERAVRRDIPLQP
                     GIRRAYAQGTRDSTGAPGRNYWQQRVDYRINATLDAPGGVLHGSETVTLHNTTPNTLD
                     RIALRLYQNYFKATVQRNDDVTDITDGVVMEKLVVNGVAISLTDSARYSV"
     gene            complement(531..1943)
                     /locus_tag="VLI40_13975"
     CDS             complement(531..1943)
                     /locus_tag="VLI40_13975"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HSU98339.1"
                     /translation="MAPLRLGVHYLRMRLDGLGWALSGCLLMSFGCAHRSQSDLISDT
                     GPEISVRRMRVRQHGIPPGPTFWNSVSELDVTAARVQASTVSERFFTDALSSLVNGDL
                     GGAEVLFHSLLADPDPLVRGRARIGLTVSLNAQGKWQELAALPPEIRAGGDTVDLIDR
                     AAVDSWAGVLRNVPPVTIDAPATPDVLPVLGSTVGTPIIKVYINGHERYFWLDTGATM
                     SLIASDVAAECGVVPITRDTLAIAAAQGRIAARPAIANTVRIGKITVRNLPVALLDPS
                     ALRLDKRLSQGRLVTVKLDGVIGSDVLRRLSVVLDMGAGTIALARPATHPPRQRSLIW
                     IGFPVVRLLTRDGKPVLFGLDTGADSTIVTDAWMDRTPDPGLSPAKGSVDVLGATHTS
                     DLPVLRNVTVGDGEYILRLRGVPIVQERRQTFVALDGVLGADVLAHATLRMDITNGMF
                     SIRAPGTGPLPNDTASVRSH"
     gene            complement(2013..2306)
                     /locus_tag="VLI40_13980"
     CDS             complement(2013..2306)
                     /locus_tag="VLI40_13980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HSU98340.1"
                     /translation="MSEDQVKLGLRRVKDPDLQLNIMDLGLVYGVRVDGAVVSVDMTL
                     TSPGCPSGPEIMGDAERQLRTLPGVEDVKINLVWAPFWSPDKIEPRVRAYLGL"
BASE COUNT          462 a          833 c          843 g          515 t
ORIGIN      
        1 tcacactgta gcgcgcgctg tcggtcaatg atatcgctac accgttgaca accagcttct
       61 ccatgacgac gccgtcggtg atgtcggtga cgtcgtcgtt gcgctgcacg gtcgccttga
      121 aatagttctg atacaatctc agcgcaattc tgtcgagcgt gttcggcgtc gtgttgtgca
      181 acgtcacggt ctcggacccg tgcagcacac cgcccggagc gtccagtgta gcattgatgc
      241 ggtaatcgac gcgctgttgc cagtaattcc tgccgggcgc gccagtggag tctcgcgtcc
      301 cctgcgcgta cgctcggcgg atcccgggtt gcaaggggat gtcgcgccgt accgcgcgct
      361 ccggcagcgt cgatctcgtc ggctgtgtcg cgcgttgcgc accggcggac gccgcggcga
      421 acattactgt ggcaaatgct gtgacgaatc ggttcatggg gacggtggcg gtgcggttac
      481 atgctgaaat tgcgagcgat gtccgactcc gctgcagcac gcagcggtga ctagtgcgat
      541 cgcacggatg cggtgtcgtt cggaagcggg ccggtaccgg gtgcacggat cgagaacatt
      601 ccgttggtaa tgtccatccg caatgtcgca tgcgccagta cgtcggcacc gagtacacca
      661 tccagggcaa cgaaggtctg tcgcctctcc tgcacgattg gaacgccgcg caaacggaga
      721 atgtattcac catcgcccac cgtgacgttg cgcaacacgg gtagatcgct cgtgtgtgtc
      781 gcaccgagca cgtcgacgct tcccttggcc ggcgacagtc cgggatccgg ggttctatcc
      841 atccacgcgt cggtgactat cgtcgagtcc gcgccggtat cgagaccgaa cagtacgggc
      901 ttgccgtctc gcgtgaggag acgcaccacg ggaaagccga tccagatgag cgagcgctgt
      961 ctgggcggat gtgtagcggg acgcgcgagc gctatcgtac cagcacccat gtcgagcacg
     1021 acgctcaatc tgcgcagcac gtcggagcca atcacaccgt ccagcttcac cgtgacgaga
     1081 cgcccctgcg agagccgctt gtccagccgc agcgcggatg gatcgagtag cgcgaccgga
     1141 agattcctga ccgtgatctt cccgatccgg acggtgtttg ctatcgcagg gcgcgccgcg
     1201 atacggccct gcgcggccgc aattgcaagt gtgtccctgg tgataggcac cacgccgcat
     1261 tccgcggcga cgtcgctcgc gatcagcgac atggtggcgc cggtgtcgag ccagaagtaa
     1321 cgctcgtgac cgttgatgta caccttgatg atcggtgtgc ccacggtgct gccgagcact
     1381 ggcagaacgt cgggcgtcgc cggcgcgtcg atggttaccg gcggtacgtt gcgcaacacg
     1441 ccggcccagg aatcgacagc ggctcgatcg atcagatcga ctgtgtcgcc accggcgcga
     1501 atttccggcg gcagcgcggc gagttcctgc cacttgccct gcgcgttgag tgacacggtg
     1561 agcccgatcc gcgcgcgtcc gcgcacgagt ggatcaggat cggcgagcag cgaatggaac
     1621 agaacttcgg cgccgcccag gtctccgttc acgagcgagc tcaacgcgtc ggtaaagaat
     1681 cgctccgaaa cggtgctcgc ctgcacacgc gccgcggtga cgtcgagctc gctcactgag
     1741 ttccagaacg tcggaccggg cggaattccg tgctgcctga cccgcatccg ccttacgctg
     1801 atctccggtc cggtatccga gatcagatca gactggctcc tgtgcgcgca gccgaacgac
     1861 atcaacaggc aacccgacaa cgcccaaccg aggccgtcca aacgcatgcg gagataatgc
     1921 acgccgaggc gtaacggcgc cattgaatta tggtttacga attgtttacg aacggatggg
     1981 acgcgtccaa attcgatcgc gccgaattgg gcctacaatc ccaggtacgc cctgaccctt
     2041 ggctcgattt tgtccggcga ccagaacggt gcccagacga gattgatctt cacgtcctcg
     2101 acacctggca gcgtgcgcag ctgccgctcg gcgtctccca tgatttcggg accagacgga
     2161 cagccgggcg acgtgagcgt catgtctacc gatacaacgg cgccgtcgac gcgcactccg
     2221 tagaccagcc ccaggtccat gatgttgagc tgcaggtccg gatccttcac acgccggagt
     2281 cccagcttca cctgatcttc actcacgacg cccgggaccg gctcggacgc cggcgccgcg
     2341 tcggctacgt cggcgactgg cgccgtcgag tcagcgtttg tgctttgact tgctgcttga
     2401 gtggctggac tttgctggct tcttggagac gtggctggag gcgtgctttg ctgtgcgctt
     2461 tgcggcatgc tttgcggcgt gcttggcggg gtgctttgcg ctcgagcttc gttcgtgttt
     2521 tgcagcggat ctggtgcggc ttccatgtat tgaagataac gactttgcgt ggcgagcccg
     2581 tccgccgcgc ttggctctta cgcgctcgtg ccagccgacc tcgcgatcgg cgcggaacga
     2641 tgcaggcatc acc
//
LOCUS       DATIMD010000625         5852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3737466, whole genome shotgun sequence.
ACCESSION   DATIMD010000625 DATIMD010000000
VERSION     DATIMD010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5852
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3737466"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..267
                     /locus_tag="VLI40_13985"
     CDS             <1..267
                     /locus_tag="VLI40_13985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98341.1"
                     /translation="AAHLTTLFPEIRPRGYFEIRSIDSMEPDRVGEALRFISRLVHDE
                     DVAAEAQEIVGNPDASLLPRAAEFGRADATVDAPLKVLDILAAD"
     gene            complement(317..844)
                     /locus_tag="VLI40_13990"
     CDS             complement(317..844)
                     /locus_tag="VLI40_13990"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HSU98342.1"
                     /translation="MGFPLPGEIVLLTASALAAQGDLNIVTVALAAWIGTVAGGTGGY
                     WIGRFGGMPLLHRYGRWIGMNPERLAAAHGFFERNGVRTIIVARFVAILRMIAGIVAG
                     AAEMSFGVFEICNAIGGLLWATAFAALGYSFGRELPRLERYLRGGAFTLLGVVVVGGL
                     LLWVYRRRQAAVVKR"
     gene            complement(1031..1909)
                     /locus_tag="VLI40_13995"
     CDS             complement(1031..1909)
                     /locus_tag="VLI40_13995"
                     /inference="COORDINATES: protein motif:HMM:NF013867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008983 - protein-glutamate
                     O-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HSU98343.1"
                     /translation="MITTDDYSYLSTLLRTKSGLALGPGKEYLLESRLPPVAKAYGFA
                     SVNELVSTLRAGPHQELIKAVCDAMATGETFFFRDTIPFEIMRTTILPELAERCRRGG
                     RALRIWSSAASTGQEAYSIAMLVAEMGVQLSGVRVDLIATDFSSQALNRARRGLFTQI
                     EVQRGLPERYLRQFFINTPEGFRLSDDIRKRVAFKELNLLESFRSLGQFDIVLCRNVL
                     IYFDTMTKKDVLDRLSSALIPGGYLFLGATETAFGLTERLVRIPDIPTSLHVRRDDAE
                     VAEQRLRAGTQAVFVA"
     gene            complement(1906..2982)
                     /gene="cheB"
                     /locus_tag="VLI40_14000"
     CDS             complement(1906..2982)
                     /gene="cheB"
                     /locus_tag="VLI40_14000"
                     /EC_number="3.1.1.61"
                     /inference="COORDINATES: protein motif:HMM:NF001965.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis-specific protein-glutamate
                     methyltransferase CheB"
                     /protein_id="HSU98344.1"
                     /translation="MTKSGVQPIRVLIVDDSAVVRGVLGRMVDAQEDMRVATTAMNGS
                     DALDALRLQEIDVVLLDIEMPVMDGLTALPLIVQRHPRVRVLVTSSLTRQSADVTVRA
                     LGLGAVDYIYKPSTRGGGVFGVEAAAAEVVAKIRAVAGYETPGGDAAALRGARRIQPP
                     SGDFEPQVLALAASTGGPNALAAVVSGLPRDFPLPVLVTQHMPPIFTTMFAQRLARES
                     RLPCDEARDGEALLPGRIYVAPGDHHLTVLGGGLVRSPALHVTNDPPEHHCRPAADPM
                     FRTAAQAFPNGVLAVVLTGMGDDGREGCRAVAASGGRVIVQDETTSVVWGMPGSVVAS
                     GIPCSILPLQSISAHVASLCPVRS"
     gene            complement(3016..5028)
                     /locus_tag="VLI40_14005"
     CDS             complement(3016..5028)
                     /locus_tag="VLI40_14005"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HSU98345.1"
                     /translation="MTTRINLDDLSDSVPLATPTRNGNGDNPAKSERRKTDRRSGALR
                     ERQVVDELETRVLEAQTHARVIMHVAGATARAGSAAEAARGALEAIRAGFGWPYGSYW
                     SVDAQKENLRFSLESGAVNNEFHRITVSAAYAEADGLVGKAWRYRDVFIVDDLQYLQD
                     RRGEVAQAAGCTAAIALPLSVGGEIVGALDFFVMEPLALSDERIDVLRRVAELVSSAL
                     ERMRERTTRLEAEEDMEVLVTVLRANAGRNSVDDIAKVALELVRSSFKWSYGTYWVID
                     SVANRLRFSVESGSVDEDFRRATRDCTFEQGEGLAGRAWASHDLAFVADLADQGDAIR
                     SPMARRANIRSGVAFPIIVKGRVIGIMEFVSAEELRPSERRLTMLRDVSRMVSGAAEQ
                     VALANEFERDVKSVVQMVTVSAADVEASAQGMAASAEETACQAQAVAASSEQATRNVQ
                     TVASSAEQLSASVREIAGLVQEASTVAQHAVRQASSASSTMVQLGQSSKEIGQVIKVI
                     TSIAQQTNLLALNATIEAARAGEAGKGFAVVANEVKELARQTARATEEIERKIASVQD
                     DATRAVRDIGEISGVIGTINQISGTIAAAVEEQNAATGEISRNVTEAARGTADVTLNI
                     AGVTVAAGESGHTAETLNGSAAALNAEAVRLGGAVDNFLGKLRAGI"
     gene            complement(5044..5493)
                     /locus_tag="VLI40_14010"
     CDS             complement(5044..5493)
                     /locus_tag="VLI40_14010"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSU98346.1"
                     /translation="MTASLAPSGEVVTFRVGDQWFGVDVMDVQEVIGQLRIARVPLAA
                     PGIAGFLNLRGQIVTAIDVHRRLEISRSTSESSMNVVVRDGDELFALVVDEVGDVVAV
                     SSGTLDPAPASLGGAWARVCTGVVRMDQGLLAIVDVTRLLDEQNTRP"
     gene            complement(5490..>5852)
                     /locus_tag="VLI40_14015"
     CDS             complement(5490..>5852)
                     /locus_tag="VLI40_14015"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSU98347.1"
                     /translation="VQAVPLSSVARLEEISSDRIEYAGGRPVVQYRGFLLPLVPASPA
                     VTFTSGRSNSVIVFNEGSASFGIAVSEIRDIVDEIVNLELASTRPGVLGTAVIAGAAT
                     EVLDVSYYMERARRGSVS"
BASE COUNT         1138 a         1936 c         1735 g         1043 t
ORIGIN      
        1 gctgcgcatc tcaccacgct ctttccggag atacgtccgc gcggctactt cgagatccgt
       61 tcgatcgact ccatggagcc cgatcgcgtt ggcgaagcgc tgcgtttcat ctcacgtctc
      121 gtgcacgacg aagatgtggc agcggaagcc caggaaatcg tcggcaaccc ggacgccagc
      181 cttctgccac gcgccgcgga gtttggacga gctgacgcga cggtcgacgc accactcaag
      241 gtgctcgaca tactcgccgc ggactagagc aaactcatca tccgtgcatt cgcgggaatg
      301 aagtgggcgc gcaacgtcac cgcttcacga ccgcggcctg ccgtcgacgg tacacccaca
      361 acaacagccc cccaaccaca actacgccca acagcgtgaa ggcgccgcca cgtaaatagc
      421 gctcgagtcg aggcagctcg cgcccgaagg aataacccag agcggcgaac gcggtcgccc
      481 acagcaatcc gccgattgca ttgcagatct cgaacacccc gaacgacatc tcggctgctc
      541 cggcaacgat gcctgcaatc attcggagga tcgcgacgaa tcgcgcgacg ataatcgttc
      601 gcacgccatt ccgctcgaag aatccgtgcg ccgccgccaa tcgctctgga ttcatcccta
      661 tccagcgccc gtaccggtgg agcagaggca taccaccaaa ccggccgatc cagtagccgc
      721 cggtcccacc cgcgactgtc ccgatccatg cggccaatgc gacagtcacg atgttcagat
      781 cgccctgggc agcgagagcg gacgcggtga gaagcacgat ttcgcccgga agcggaaatc
      841 ccatcccttc gagcgtgatg aagcccgcaa cggcaacttc gccgtacgtg cggacaagct
      901 cggtaactgt cagagcactc tcttggcgga catatgcatg aggtcacaca tcattgcagg
      961 aatcaaccca gggcacgcgc cgtgccgcaa gtgcgactcc agaccgctgg tacgattcag
     1021 atggtgcgat tcaggccacg aaaacggcct gtgtacccgc gcgcaacctc tgctccgcca
     1081 cttcggcgtc gtcccggcgc acgtgcagcg acgtcggaat gtcggggatg cgcacgagtc
     1141 tctcggtgag accgaacgcc gtttcagtcg caccgagaaa tagatagccg cccggaatca
     1201 gcgcggacga aaggcgatcc agcacatctt tcttcgtcat cgtatcgaag tagatcagca
     1261 cgtttcgaca cagcactatg tcaaactgac cgagcgatct gaacgattcg agcagattca
     1321 gctccttgaa cgcgacccgc ttgcgaatgt catcggagag ccggaatcct tccggggtat
     1381 tgatgaagaa ttgccgaaga tatcgctctg gaaggccgcg ctgtacttcg atctgcgtga
     1441 ataatccgcg acgtgcgcgg ttgagcgcct gcgacgagaa atcagtcgcg atcagatcga
     1501 cccgcacacc gctcagctgc acgcccattt ccgcgaccag catcgctatc gaataagctt
     1561 cctggccggt cgaggcagcg gagctccaga tgcgcagcgc gcgaccaccg cgccggcagc
     1621 gttcggccag ctccgggaga atggtcgtgc gcatgatctc gaacggaatc gtgtcccgga
     1681 aaaagaatgt ctcgccagtc gccatggcgt cgcagaccgc tttgatcagc tcctgatgcg
     1741 gaccggcacg cagcgttgaa accagttcgt tgacggaagc gaatccatat gccttcgcga
     1801 ccggtgggag ccggctctca agcaggtatt ccttgcccgg cccgagcgcg agtccgctct
     1861 tggtgcgcag cagcgtgctg aggtacgaat aatcgtcggt ggtgatcacg accggacagg
     1921 acagagagaa gcaacgtgcg ctgagatgga ctgcagcggg agaattgaac acggaattcc
     1981 ggacgcgacg acacttccag gcattcccca gaccacactc gtagtctcgt cctggacgat
     2041 cacgcggccg ccggacgctg cgacggcccg gcacccctcg cggccgtcgt cgcccattcc
     2101 ggtcagaacc actgccaaca ctccgttcgg aaacgcctga gcagccgttc ggaacatggg
     2161 atcggcggcg ggacggcagt ggtgttccgg cggatcgttc gtgacgtgca gcgctgggct
     2221 gcgcacgaga ccgccgccca gcactgtaag gtgatgatcc cccggggcaa cgtagatacg
     2281 gcccggcagc agagcttcac cgtcgcgcgc ctcatcgcat gggagacggc tctcccgtgc
     2341 aagacgctgg gcgaacatgg tggtgaagat cggcggcatg tgttgcgtga cgagcacggg
     2401 caacgggaag tcacgtggaa ggcctgatac taccgcagcg agtgcgttgg gaccacccgt
     2461 gctcgccgcg agcgcgagaa cctgcggctc gaaatcgcca ctgggcggtt gaatgcggcg
     2521 cgctcctcta agcgccgccg cgtcgccgcc tggagtttca taccctgcaa ccgcccgaat
     2581 cttcgctacc acttcggctg cggcggcctc gaccccaaac acaccgccgc cacgtgtaga
     2641 cggcttgtat atgtaatcca ccgcgcccag acccagagca cgcaccgtga cgtccgcgct
     2701 ctggcgtgtg agcgagctgg tgacgagcac acggacgcgg ggatgccgct gcacgatgag
     2761 cggaagcgca gtcaggccgt ccatcaccgg catctcgata tcgagcagga cgacgtctat
     2821 ttcctgcagt cgcagtgcgt ccagtgcgtc actgccgttc atcgcggtcg tcgccacccg
     2881 catgtcttcc tgagcatcca ccattcggcc cagtacaccg cgcacgacgg ctgaatcgtc
     2941 cacgatcagt acacgaatcg gctggacgcc agactttgtc atggcgacgc tggaatttgg
     3001 gatgtcggat cccgtctaga tgccggcgcg cagcttgccg aggaagttgt ccaccgctcc
     3061 gcccagccgc accgcctcgg cattcagcgc cgccgctgac ccgttcagag tctcggcggt
     3121 gtgtcccgac tcgccagccg cgacggtgac gccggcgata ttgagcgtca cgtccgcggt
     3181 tccgcgagca gcttcagtca cgttgcggga gatctcaccg gtggccgcat tctgctcttc
     3241 cacagcagcc gcgatcgttc cggaaatctg attgatggtg ccgatgacgc ccgaaatctc
     3301 cccgatgtca cgaacggcgc gagtagcgtc gtcctgaacg ctcgcgatct tgcgctcgat
     3361 ctcctcggtg gcgcgagcag tctggcgtgc aagctccttg acttcgttcg cgaccaccgc
     3421 gaagcccttt ccggcctcgc cagcacgagc cgcttcgatc gtcgcgttca gcgcgagcag
     3481 attggtctgc tgcgcgatcg acgtgatgac cttgatgacc tgcccgatct ccttgctgct
     3541 ctggcccagc tgaaccatcg tgctgcttgc gctggaggcc tgtcgaacgg cgtgctgagc
     3601 aacggtggat gcttcctgca ccagtccggc gatctcgcga acactcgccg acaactgctc
     3661 cgccgagctc gcgacggttt gcacattgcg ggttgcctgt tccgacgacg cggcgacagc
     3721 ctgcgcctgg caggcagtct cttctgccga agcggccatg ccctgcgcac tcgcttcgac
     3781 gtcagcggcg gatacggtta ccatctgaac gacgctcttg acgtcacgct cgaattcgtt
     3841 tgcgagcgcc acctgctcgg cggctccgct caccatacgt gatacgtcgc gcaacatggt
     3901 gaggcgtcgc tcggacggac gcagctcctc ggcggagacg aactccatga tacctatcac
     3961 acgtcccttc actattatcg ggaacgcgac gccactccgt atattggcac gacgcgccat
     4021 cggcgagcga attgcgtctc cctgatccgc caggtcagcg acgaacgcga gatcgtgact
     4081 cgcccatgcg cggccggcca gtccttcccc ctgctcgaat gtgcaatcgc gagtcgcacg
     4141 ccggaaatcc tcgtcgaccg atcctgattc cacggagaaa cgcagcctgt tcgccacgct
     4201 gtcgatcacc cagtaggtac cgtacgacca tttgaacgag ctgcgaacga gctcgagtgc
     4261 gacctttgcg atgtcgtcga ccgagttgcg cccggcgttg gcgcgcagca cggtgacgag
     4321 cacttccatg tcctcttccg cttcgaggcg ggtggtgcgc tcacgcatgc gctcgagcgc
     4381 cgacgacacc agctcggcga cacgacgaag cacatctatc cgctcatctg agagtgccag
     4441 cggctccatg acgaagaaat cgagcgctcc gacaatctcg ccgcctaccg acaacgggag
     4501 cgcgatcgcg gccgtgcatc ccgccgcctg tgcgacttcg ccgcgacggt cctggagata
     4561 ctgcagatca tcaacgatga atacgtcgcg ataacgccac gcctttccca cgagaccgtc
     4621 tgcttctgca tacgcggcgc tgaccgttat tctgtggaac tcgttgttca ccgctcccga
     4681 ttccagcgag aagcgaaggt tctccttctg cgcgtctacg ctccagtacg atccgtacgg
     4741 ccagccgaag ccagcccgaa tggcttcgag tgcgccgcgc gctgcttcgg ccgcgctgcc
     4801 cgctcgcgct gtggcgccag caacgtgcat gatgacgcga gcgtgagtct gcgcttcgag
     4861 tacccgtgtc tcgagctcgt ccacaacctg tcgctcgcgc agcgctccag agcgccggtc
     4921 cgttttccgg cgctcggact tggccggatt gtcgccgttg ccgttccggg tgggcgttgc
     4981 caacggaacg gaatcggaga ggtcgtcgag gttgatgcgg gtcgtcatac agcgtatctc
     5041 ggtttatggg cgagtatttt gttcatccag caggcgagtt acatcgacaa ttgcgagtaa
     5101 tccctggtcc atccgtacaa cgccagtgca gacccgagcc caggcaccgc caagactggc
     5161 cggagcagga tcgagcgttc ccgacgagac cgcgactacg tcgccgactt cgtcgacgac
     5221 gagggcgaac agctcgtcgc catcgcgaac caccacattc attgaagatt cggacgtaga
     5281 acgggaaatc tccagccgcc ggtgcacgtc gatcgccgtt acgatctggc cgcggaggtt
     5341 gagaaatccg gctattccag gcgccgccag cggcacgcgc gcgatccgta gctggccgat
     5401 cacttcctgc acgtccatga cgtcgacgcc aaaccactgg tcgccaacgc gaaatgtcac
     5461 gacttcgccg gagggggcga gcgaggcggt catgagacgg atccccggcg tgcgcgttcc
     5521 atgtagtacg agacatcgag aacttcggta gcggctccgg cgatcacggc cgttccaagt
     5581 acgccgggac gcgtcgaggc aagttccaga ttcactatct cgtcgacgat gtcgcgtatt
     5641 tcgctcacgg caatgccaaa cgaagcgctt ccctcgttga atacaatgac cgagttgctg
     5701 cggcccgatg tgaaggtcac agccggactc gcgggaacga gaggcagcag gaatccgcgg
     5761 tactgaacca ccgggcgtcc acccgcatat tcgattctgt ccgacgagat ctcttcgagg
     5821 cgcgcgacgc tcgagagcgg cactgcctga ac
//
LOCUS       DATIMD010000626         4401 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2291618, whole genome shotgun sequence.
ACCESSION   DATIMD010000626 DATIMD010000000
VERSION     DATIMD010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4401
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2291618"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1501)
                     /locus_tag="VLI40_14020"
     CDS             complement(<1..1501)
                     /locus_tag="VLI40_14020"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSU98348.1"
                     /translation="MNRLALLSLALLPATALAQRADTTASLEPVIVTATTLPTPSSSL
                     SQPVTVLKGDELRARGVVTVAEALREAPGATIAQSGSYGGVTSLFLRGGESRYTKVLI
                     DGTPINAVGGTQFFENLSMDNVDRIEIVYGPSSALYGADAVAGVIQIFTRRGAGPATL
                     DADARAGTYGSHDESVSIRGGVPAAGYSIGGGWHATDGVYAFNNAYQNGDVNGSLQLR
                     PDEKSEISLTTRYTGSVYHFPTDFTGAATDTNSYTREHRLVTGLDASRGVASGVRLRL
                     IAGDNELHGLSEDTKASGMTATPLEKTSSPSDGYRRFAEGRVEAAVGKLGTATVGAQY
                     QVEGQRSRQVTLDYATDPASGTAVVTPGSDDHRITRGYYVAVQGSPISLFSYDLSARH
                     DDHSDFHGVNTYHAGATVALWTGARIRAAYGTGFNAPSFDETQGSAFNIGNPLLQPEQ
                     SHSLDVGLVQTLFDGRLRASFGAFDQRFSNQIQFVSGTSGGPPDFVQLTP"
     gene            complement(1533..2315)
                     /locus_tag="VLI40_14025"
     CDS             complement(1533..2315)
                     /locus_tag="VLI40_14025"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU98349.1"
                     /translation="MIAYENVTIAYDPDAKPVVSGVSLRADRGAVTAIVGPNGSGKST
                     LVKALLGRVPLLSGRITIDGTDVAEIPRRDLAQRCAVVTQREDTTFARNVAEYIALGR
                     YPHTGAWGSAASGDSEAVLSAARRAGVEPLLGRITDELSGGEWQRVRVARALAQGGDA
                     LVLDEPTSFLDVGHEMQIFQLAVSLAESGAAVLLVSHQLNLVARFATSMVLLHHGAVV
                     ATGAPDAVMRGELLERVYDWPLVVTRDPAVNAPMLVPLRRST"
     gene            complement(2312..3298)
                     /locus_tag="VLI40_14030"
     CDS             complement(2312..3298)
                     /locus_tag="VLI40_14030"
                     /inference="COORDINATES: protein motif:HMM:NF013219.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HSU98350.1"
                     /translation="MIVHRAWHWWIGVLLLAAVCVLGVALGTVSLSPAQVLAALANRA
                     APAVHSIVVTLRLPRVVLAALVGVALGTSGTTLQATLRNPLAEPYLLGVSGGAAVGAV
                     AAMMLGASSALWPLLAFAGAGVAVLLAIGVARGAGRSGHTDVRVLLMAGVVVGAFANA
                     VIMILLANVPPNTVRGALWWMMGSVADATWYTVAWLGLYVAAGVAYLVAYAPEIDVLT
                     LGEDSAAGLGVDVHRATRRAFLASALLAAATVAAAGLIGFVGLVVPHMARAFGLSRQR
                     AMLAGCSIIGATLVVASDLLARVVIPPSELPLGAVTAVLGVPFFLIQLRRMR"
     gene            complement(3295..4284)
                     /locus_tag="VLI40_14035"
     CDS             complement(3295..4284)
                     /locus_tag="VLI40_14035"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helical backbone metal receptor"
                     /protein_id="HSU98351.1"
                     /translation="MRFAAALASPHRSTLRIRISACAAYAACATLAILAASCTPDATR
                     NATASLGATNTSATNPSSVARDDFGRAIPFVIRPHRVVSLNPTTTEVMFAIGAGTLLV
                     GRSHWDDWPDSARTIPDMGNGISPNVEKIVAAHPDLVLLYASEDNRAAAERLESAGIH
                     TVSLRIDRIADFDRSVRLLGRVLGDSARATVVADTVRASLRRVAAATSGLHKPSVVWP
                     LIDTSPMVVGGGSFMNELLAVAGARNVYAYLPQPSPIVSIEDVISKNPDFVIRGGEGG
                     SDAPLAGVWRAVPAIMQGHVIRIPLTMILRPSVQMGTAARVLARALHPGIVLP"
BASE COUNT          878 a         1433 c         1366 g          724 t
ORIGIN      
        1 atggcgtgag ctgcacgaag tccggcggac caccggacgt tcctgacacg aactgaatct
       61 gattgctgaa tcgctgatcg aacgcgccga agcttgcacg caatcggccg tcgaacaacg
      121 tctgcaccag gcccacgtcg agcgagtgcg attgctcagg ctgcagcaac ggatttccga
      181 tattgaatgc agacccctgc gtttcgtcga acgatggcgc gttgaacccg gtcccgtacg
      241 ctgcacggat ccgcgcgccg gtccacagtg cgacggttgc tccggcgtgg tacgtgttga
      301 cgccgtgaaa atcggagtga tcatcgtggc gcgcgctcag atcgtatgag aagagcgaga
      361 tcggacttcc ctgcacggcg acgtaatatc cacgcgtgat gcgatggtcg tcggagccag
      421 gcgtcacgac cgcggtgccg ctggctggat cggtggcgta gtcgagtgtc acctggcgcg
      481 agcgctgccc ttcgacctga tactgcgcgc caaccgttgc agtaccgagc ttgccaactg
      541 cggcttcgac gcgcccctcc gcgaaccggc gatagccgtc tgacggtgac gaggtcttct
      601 cgagcggcgt cgcggtcatg ccggacgctt tcgtatcctc ggacagtccg tgaagctcgt
      661 tgtcacctgc aatgaggcgc agcctcacgc cggatgcgac cccgcgcgat gcgtccagac
      721 cggtgacgag ccggtgctca cgtgtgtatg aattggtatc cgttgccgca cccgtgaaat
      781 ccgtcggaaa gtgatatacc gagccggtat atcgcgtggt cagggatatt tccgatttct
      841 catcgggacg gagctgcagc gaaccattca catcgccgtt ctgataggcg ttgttgaatg
      901 cgtacactcc atccgtcgcg tgccagcctc cgccgatgga gtatccggcg gccggtacgc
      961 cgccccggat cgacacggac tcgtcgtgcg agccgtaggt gcctgcacgc gcgtccgcgt
     1021 cgagcgtcgc cgggccggca ccgcgcctcg tgaaaatctg aatcacaccg gcgactgcgt
     1081 cggcgccata caacgcgctg gatggaccat aaacgatctc gatccggtcg acgttgtcca
     1141 tcgacagatt ctcgaagaac tgagttccgc cgaccgcgtt gatcggagtt ccatcgatca
     1201 acaccttggt gtaacggctc tccccgccgc gcaggaagag cgacgtcaca ccaccgtacg
     1261 atccgctctg agcgattgtc gcacccggcg cctcacgcaa cgcctcggcg actgtgacta
     1321 cgccacgtgc gcgcagctcg tcgcccttga gtacggtgac aggctggctg agtgatgacg
     1381 acggcgtcgg aagtgtagtc gcggtcacga tcacgggctc gagcgacgcc gttgtgtccg
     1441 cgcgctgcgc cagcgcagtc gcgggcagca gcgccagtga taatagtgcg agtcggttca
     1501 ttgtatttac gtgtatttat gtggatgtat ggtcatgtcg agcgacgcaa cgggaccagc
     1561 attggagcat tcactgcggg atcgcgagta acgaccagcg gccagtcgta cacacgctcc
     1621 agcagctcgc cacgcatcac tgcgtccggt gctccggttg cgaccacggc gccgtggtgc
     1681 agcaggacca tcgaagtcgc aaagcgcgcg acgagattca actggtgact cacgagcaac
     1741 acggcagcgc cggattccgc gagagacacc gccaactgga agatctgcat ctcgtggccg
     1801 acgtcgagaa acgacgtcgg ctcgtccagc acgagagcgt cgccgccctg cgccagcgct
     1861 cgcgcaactc gcactctctg ccactcgcca ccggacagct catccgtgat tcttccgagc
     1921 aacggctcga caccggctcg gcgcgcagct gacaaaactg cctccgagtc accggaagcc
     1981 gctgaccccc acgcaccagt gtggggatat cggccaaggg cgatgtattc agcgacgttt
     2041 cgcgcgaacg ttgtgtcctc gcgctgagtg acaactgcgc atcgctgcgc aagatcgcgg
     2101 cgcgggatct cggccacatc cgtaccgtcg atcgtgatac gaccggataa gagtggcacg
     2161 cgaccgagaa gtgccttgac gagagtgctc ttgccgcttc cgttgggtcc gacgatagcc
     2221 gtcacagctc cgcggtctgc gcggagcgat acgccggata caacaggctt tgcatccgga
     2281 tcgtacgcga tggtcacgtt ctcgtacgcg atcatcgcat tctcctcagc tgaatcagga
     2341 agaatggaac gccgagaacc gctgtcaccg cgccgagcgg aagctcggac ggtggaatga
     2401 cgacacgcgc cagaaggtct gacgccacga cgagcgtcgc gccgattatc gagcaaccag
     2461 ccagcatcgc gcgctgccgc gacaggccga acgcgcgcgc catgtgtgga acgacgagtc
     2521 cgacgaagcc gatcagaccg gcagcggcaa ccgttgcggc ggcgagcagt gcgctagcaa
     2581 gaaatgcgcg tcgcgtcgca cgatgcacgt cgacgccgag cccggcagcc gagtcctcac
     2641 cgagagtcag cacatcgatt tcgggagcgt aggcgacgag atacgcaacg ccggccgcga
     2701 catacagccc gagccaggca actgtgtacc acgtcgcgtc cgcgacagag cccatcatcc
     2761 accataaagc gccgcgaacg gtgttcggcg ggacgtttgc cagcaggatc atgatcacgg
     2821 cattcgcgaa cgctccgacg accacaccgg ccatgagcag cacgcgtacg tcggtgtgtc
     2881 cggaacgtcc ggcgccgcgc gccacgccga tcgcgagcag caccgcgact ccggctccgg
     2941 cgaacgcgag caagggccac agcgccgaag aggcgccgag catcatcgcc gcgacagcac
     3001 caaccgcagc tcctccggaa acgccgagca ggtacggctc cgcgagcgga tttcgcaacg
     3061 tggcctgcag cgtggttcca ctggttccca gcgctactcc cacgagcgct gccagcacca
     3121 cccgtggcaa ccgtagcgtc acgacgatcg agtgaaccgc cggagcggca cgattcgcca
     3181 gcgccgccag cacctgtgcc ggtgaaagcg acaccgtgcc gagcgcgacg ccaagcacac
     3241 agacagcagc aagcagcaag acgccgatcc accagtgcca cgcacgatga acgatcacgg
     3301 caatacgatc cccggatgca gcgcgcgggc gagaaccctt gccgccgttc ccatctgtac
     3361 cgatggccga aggatcatcg tgagcggaat ccggatcacg tgtccctgca taatggccgg
     3421 aaccgcgcgc catacaccgg cgagcggcgc gtcgctgccg ccctcgccgc cgcgaatgac
     3481 gaagtcggga ttcttggata tcacatcttc gatggagacg atcggcgacg gctgtggaag
     3541 atatgcgtac acgttgcgcg caccggcgac cgccagcagc tcattcatga agcttccgcc
     3601 gccgacgacc atcggcgacg tatcgatcag tggccacaca acactcggtt tgtgcagacc
     3661 actcgtcgca gccgccactc ggcgaagcga cgcacgcacg gtgtccgcaa cgactgtcgc
     3721 gcgcgcactg tcaccgagca ctcgacccag caaccgaacc gagcgatcga aatcagcgat
     3781 tcggtcgatg cgcagggaga ccgtgtgtat gccggcactt tcaaggcgct cggcggccgc
     3841 acgattgtcc tcgctcgcgt acagcagcac gagatcaggg tgtgcggcga caatcttttc
     3901 gacgttggga ctgataccat tccccatgtc ggggatcgtt cttgccgaat ccggccaatc
     3961 gtcccagtgt gagcggccca cgagcagcgt gcccgcaccg attgcgaaca tgacctcggt
     4021 cgtagtcgga ttgagcgaga cgacgcgatg cggccgtatc acaaacggta tcgcgcgtcc
     4081 gaaatcgtcc cgggcgactg acgatggatt ggtcgctgat gtgttcgtcg cgccgagcga
     4141 cgctgtcgcg ttccgagttg cgtctggcgt acaggatgcg gcgagaatcg cgagcgtggc
     4201 gcacgcagcg tacgcggcgc atgcggagat ccgtatccgt aatgtggatc tgtgcggcga
     4261 cgccagagca gccgcgaaac gcatggtcct gaaacgcaaa acgggcatcc tctttcggag
     4321 gaagcccgca acgtatgcac gagatcgaca ggcgacgact tacaacgcca ccagccctcc
     4381 cccgagggtc tgtgagatgt g
//
LOCUS       DATIMD010000627         2927 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2584215, whole genome shotgun sequence.
ACCESSION   DATIMD010000627 DATIMD010000000
VERSION     DATIMD010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2927
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2584215"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1154)
                     /locus_tag="VLI40_14040"
     CDS             complement(<1..1154)
                     /locus_tag="VLI40_14040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HSU98352.1"
                     /translation="MTHPNSFGSRATLTVAGRDYTIFRLGALSSPSGGNSDRLPVSLK
                     ILLENLLRNEDGAFVKRDDVLALANWRVKDRAEKEIAFKTARVLLQDFTGVPAVVDLA
                     AMRDALAKLGGDATLINPLQPVDLVIDHSVQVDEYGSEAAFLINADMELQRNRQRYAF
                     LRWGQTAFRNFRVVPPDTGIVHQVNLEYLASCVFTRDDNGETIAYPDSLVGTDSHTTM
                     INGLGVLGWGVGGIEAEAAMLGQPVSMLIPEVIGFKVHGKLPPGATATDLVLTVTEML
                     RKKKVVGKFVEFYGNGLSSLSLADRATLGNMAPEYGATMGFFPVDDETIRYLRFTGRD
                     DRADLAEAYCKAQGMFRTDDMPDPEFTDTVELDLSTVTPSIAGPKRPQDR"
     gene            complement(1306..>2927)
                     /locus_tag="VLI40_14045"
     CDS             complement(1306..>2927)
                     /locus_tag="VLI40_14045"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HSU98353.1"
                     /translation="SQGRANSFGRKRFVALGALQIGALAVVLASTPFKAFELDRFFVP
                     KELALHLAAFVCVLFCLGRLRTLALDRVDFFLVAFGALSVVSAILASNRWLSMRSVAI
                     TVSGLAIFWCARSLAASGLKRPLIAVIVLATVLGAASALAQAYGLDSDYFTLSRAPGG
                     TFGNRNFVAHVSAIGVPLLVWYAVTARRTIAVFLCAIGGAILAAALVLSRSRAAWLAL
                     LVVAILLAIPVWRAALRVPHADAGRRLIFLGIIAAVGVVLSLVLPNRLNWKSDSPYLD
                     SVRGVVAYNSGSGRGRIIQYRNTLRMVEAYPILGVGPGNWPVHYPRFAARNDPSLTRD
                     DNVTANPWPSSDWVALIAERGVITVVALLLAFVGIIVNAFQLTRGSTANNPDARDPFL
                     PVAVTATVLLAIAVGFFDAVLILAAPAFIVWAALGALGATGRTRSEWTPATANRTRWT
                     LVLVVPLFLFALRSAGMTAAMQVFGTGDRLGSVQQAANLDPGSYRIQMRLALLALNRR
                     GCALARPHALRAEAMLPAAGAPRTILRRCGG"
BASE COUNT          573 a          879 c          971 g          504 t
ORIGIN      
        1 atgcggtcct gcggacgctt tggtcctgcg atgctcggcg taaccgtgct gagatccagc
       61 tcgacagtgt ccgtgaactc gggatcgggc atgtcgtcgg tacggaacat cccctgcgcc
      121 ttgcagtacg cttccgcgag atcggctcga tcgtcgcgtc cggtgaaccg cagataacga
      181 atcgtctcgt cgtcaaccgg gaagaagccc atcgtcgcgc cgtattccgg cgccatgttt
      241 ccgagcgttg cgcgatcggc gagcgagagc gacgagaggc cgttgccgta gaactcgacg
      301 aacttgccga cgactttctt cttgcgaagc atctccgtga cggtgaggac gagatccgtc
      361 gccgttgcac cgggcgggag cttgccgtgc accttgaatc cgatgacttc cggaatgagc
      421 atggatacgg gctgtccgag catcgcggct tctgcttcga ttccaccgac gccccaaccg
      481 agcacgccga gtccattgat catcgtggtg tgcgagtcgg tgccgacgag ggaatcgggg
      541 tacgcaatcg tttcaccgtt gtcgtcgcgc gtgaatacgc agctcgccag atattcgaga
      601 ttgacctggt gcacgatgcc tgtgtcgggc ggaacgacgc ggaaattccg gaacgccgtc
      661 tggccccagc ggagaaatgc gtaacgctgt ctgttgcgct gcagctccat gtcggcgttg
      721 atgaggaacg ctgcttcgga gccgtactca tctacctgaa cggagtggtc gatgacgaga
      781 tcgaccggct ggagcggatt gatgagcgtg gcgtcgccgc cgagcttggc gagcgcatct
      841 cgcatcgcgg cgagatcgac gacggcgggg acgccggtga agtcctgcag cagcacacgt
      901 gcggtcttga aggcgatttc cttttccgcc ctgtccttca cgcgccagtt cgcgagagcg
      961 agaacgtcat cgcgctttac gaaagcgccg tcctcgtttc gcaacaggtt ctcgagcagg
     1021 atcttgaggc tgacgggaag tcggtccgag tttccaccgg aaggcgagga cagtgccccg
     1081 aggcggaaga tggtgtagtc gcgtccggcg acggttagcg tcgcgcggga tccgaacgaa
     1141 ttcgggtgcg tcatgttgtg gttctcggtg cggtcgcgca cggccgcgcg gaactgcgcc
     1201 ggcgggcggc ggtgcgcggt gaaaggcgga gccactgcat ggcgcgagca tccgagccat
     1261 gcaggctaca tggaatctat actatttcgt cgttccgcga agctctcagc caccgcaacg
     1321 tcgcaggatg gttcgtggcg caccggccgc ggggagcatt gcctccgcgc gaagcgcatg
     1381 ggggcgcgcg agcgcacaac ctcgccggtt gagcgcgagc agtgccagac gcatctgtat
     1441 gcgatagcta ccggggtcca gattggcggc ctgctgcacg ctgccgaggc ggtcgccggt
     1501 gccaaacacc tgcatggcgg cggtcatgcc ggcactccgg agcgcaaaaa gaaacagggg
     1561 caccaccagc acgagggtcc agcgtgttcg attggctgtt gccggcgtcc attcggacct
     1621 cgttcgtccg gtagcgccga gcgcgccaag cgcggcccag acgatgaagg cgggcgcggc
     1681 aagtatcagt accgcgtcga aaaatccgac ggctatcgcg agcagcacgg tagcggtcac
     1741 ggcaacagga agaaatggat cgcgcgcgtc aggattgttg gccgtgctgc cgcgtgtcag
     1801 ctgaaatgcg ttgacgatga tgccgacgaa tgccagcaac agcgcaacca cggtaatcac
     1861 gccgcgctcc gcgatgagcg cgacccagtc actgctcggc cacgggttgg cggtcacgtt
     1921 gtcatcgcgc gtcagcgacg gatcgttgcg tgccgcgaat ctcgggtagt gcaccggcca
     1981 gtttccggga cccacaccga ggatcggata tgcctcgacc atgcggagcg tgttgcggta
     2041 ttgtatgatg cgtccgcgcc cgctgccgct gttgtacgcc acgacgccac gtacggagtc
     2101 gagatatgga gagtcgctct tccagttgag tctgttggga agaacgagag aaagcaccac
     2161 accaacggct gcgatgattc cgagaaatat cagccgccgt ccggcatccg cgtgcgggac
     2221 gcgcagtgct gcgcgccaca ccggtatcgc gagaagaatt gcgacgacga gcagtgcgag
     2281 ccatgccgcg cgcgagcgtg acagcacgag tgcggccgcc agaatcgcac cgccgattgc
     2341 gcacaggaag actgctatcg ttcgccttgc cgtgaccgca taccacacaa ggagtggcac
     2401 accaatcgcg gatacgtgcg cgacgaagtt acgatttccg aacgttccgc caggcgcgcg
     2461 gctcagcgtg aagtaatcgc tgtcgagtcc ataagcctgc gccagcgcgc tggcggcgcc
     2521 gagtacggtc gcgagtacta tcaccgcgat gagtggacgt ttcagtccac tcgctgccag
     2581 tgatcgcgcg caccagaata tcgcgagtcc cgagaccgtg atcgccaccg agcgcatcga
     2641 aagccagcgg ttggacgcga gaattgccga tacgaccgac agtgcgccga acgcgacgag
     2701 aaaaaagtcg actcggtcga gcgccagcgt gcgcaggcga ccaaggcaga agaggacgca
     2761 gacgaaagcc gcgaggtgaa gggcaagctc tttcggaacg aagaaccggt ccagctcgaa
     2821 cgccttgaac ggcgtcgagg cgagcacgac agccagcgct ccgatctgga gcgcgcccag
     2881 agcgacgaag cgcttccgtc cgaatgagtt tgctcgtccc tgtgaaa
//
LOCUS       DATIMD010000628         3442 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1721718, whole genome shotgun sequence.
ACCESSION   DATIMD010000628 DATIMD010000000
VERSION     DATIMD010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3442
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1721718"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(382..552)
                     /locus_tag="VLI40_14050"
     CDS             complement(382..552)
                     /locus_tag="VLI40_14050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98354.1"
                     /translation="MQVNSHDNRGRWIIIGGALGATFAANTHHLPIALALGIAAGMTI
                     GTLLNRMAPRKG"
     gene            complement(662..1162)
                     /locus_tag="VLI40_14055"
     CDS             complement(662..1162)
                     /locus_tag="VLI40_14055"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSU98355.1"
                     /translation="MSIAASVLPEFDQEMATTRTMLERVPETRAQWTPHLKSRTLGQL
                     ASHIGHLPRLGLIAMEADELDVSESGSGRSPEFDSTANLIRTFDENVRRARAAIESAS
                     DSDLMEPWTLRRAGRTVWTLPRAAVLRSFILSHMIHHRGQLSVYLRLNDVPLPSVYGP
                     SADTGG"
     gene            complement(1239..1868)
                     /locus_tag="VLI40_14060"
     CDS             complement(1239..1868)
                     /locus_tag="VLI40_14060"
                     /inference="COORDINATES: protein motif:HMM:NF015423.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HSU98356.1"
                     /translation="MTLPAVLDFVGVSVFAVSGALAAGRKQLDLLGVVVLALVTAIGG
                     GTIRDVLLDRSPIFWLANASYVLVIAASALLTVAYARWRPPPRSALLLADALGLALFS
                     ITGAQIAERTGLPAVSCVVLGTITGSAGGMVRDVLSAEIPLVLKRGNLYATAAIAGTA
                     LYVALEALGVPRPIPSFAGMTVIAGLRLAAILWGLQLPVFELDSSAEKH"
     gene            complement(1883..2413)
                     /locus_tag="VLI40_14065"
     CDS             complement(1883..2413)
                     /locus_tag="VLI40_14065"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSU98357.1"
                     /translation="MTTQILSHPAADEYAPYYNTYIAPVAGQNALDTLVTQLGALDPL
                     AALDDTRALHRYGPDKWSVKEVVGHITDGERIFACRMLRIARGDKTPLPGFDQQPYVD
                     AAHFDSMAIGALVDSFRTTRAATIALANEIHGDAWLRTGTASGFTVSARALAYVITGH
                     ATHHIGILRDRYGMPV"
     gene            complement(2427..2957)
                     /locus_tag="VLI40_14070"
     CDS             complement(2427..2957)
                     /locus_tag="VLI40_14070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98358.1"
                     /translation="MNARPTLWLAALTDYVSPLALVSDMGRNAWTRRDRQRHKALQTV
                     ANSLCNMVTVDRRYPNEVRLNHPHGGLLVLDVLTRRCTLNDADVNAIGLVDRLRLWLH
                     AQLDNARIPQDRICCVRLEMDYTAGERTYLASGRVWEMQFSLRSEVATLDQSYVGTAP
                     ACTAAVPYGIGALIAW"
     gene            complement(3008..3280)
                     /locus_tag="VLI40_14075"
     CDS             complement(3008..3280)
                     /locus_tag="VLI40_14075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98359.1"
                     /translation="MSRAFVNEDAGGTVPRRNYALPPRDDPAFDAAAAAALLEAARAG
                     ETASAEDATGYYWGERRLHEHVRRIRDRAEAANDDRLVQLADRFLR"
BASE COUNT          628 a         1071 c         1111 g          632 t
ORIGIN      
        1 agtcgatatc gggacgcgtg ttgaccagag ttaccggaag gccgcgcagc gtccgcttct
       61 cggtggccca accctgcagt gcgcgcatcg cctgcacgcg ccacctttca acgaggtcgc
      121 caagcatgat tgtaacttcg ctggcgagag tggggctgtc cagttggacc gaacgttcgg
      181 gatcgtcatc cctcgcgatt ccatcgtcat tcccgctgta gggcgcggat ttatccgcgc
      241 cttgggaacc agcccgtcgt cattcccgcg aaagcgggaa tccatgttat cgatctttga
      301 gtgcgatggt agcgcaaacc tgatcggctg cagatggatt cccgctttcg cgggaatgac
      361 ggcgttggcc tgcggctccg cttacccctt ccgtggcgcc atcctgttca acagcgtgcc
      421 gatcgtcatt ccggccgcaa tgccgagcgc cagggcgatc ggaagatggt gcgtgttggc
      481 agcgaaggtg gcgccaagcg cgcctcctat gataatccag cggccgcgat tgtcatggga
      541 attgacctgc atcgctcgct ccgtgtaaag gttctgtcgc tcgaccgggc ctggaggcag
      601 cccatttata gacgtgcctg cggtggtgag gtcaccgtcc cacgtcaccg gctggccctg
      661 gtcatccccc cgtatcggcc gaagggccgt aaacagatgg taaagggacg tcgttcagtc
      721 ggagatagac actcagctgg ccgcgatgat ggatcatgtg gctaaggatg aatgacctca
      781 gaacggcggc gcgcggaagc gtccagacgg tcctgccggc cctccggagc gtccacggct
      841 ccatcaggtc cgaatccgac gccgattcga tggcggcccg cgcgcgtcgc acattctcat
      901 cgaaagtgcg gatcaggttc gccgtggaat caaattccgg acttctgcca ctgccagact
      961 cactcacatc cagctcgtcg gcctccattg caatgagacc caaccgcggc aggtggccaa
     1021 tgtgcgatgc aagctggccc agcgtccgcg acttgagatg cggcgtccac tgcgcgcgag
     1081 tctccggcac gcgttcgagc atcgtgcgag tcgtcgccat ttcctgatcg aattctggaa
     1141 gcacgcttgc ggcaatcgac atctctttct cctgacagag gtgcggcgga gcgcgcgctg
     1201 ataacgcgct cagggcgcgc tgatagtgcg aagcagtact agtgcttttc cgccgacgag
     1261 tcgagctcga atacaggaag ctgcagtccc cagaggattg ccgctagacg taacccggca
     1321 atcaccgtca ttccggcgaa cgatgggatg ggacgcggaa cccccagtgc ctccagcgcg
     1381 acgtagagcg cggtgccggc gatcgcagcg gtagcgtaca gattcccgcg tttgagcacc
     1441 agcggaatct cggcgctcag cacgtcgcga accatgccgc cggccgatcc ggtgatcgtg
     1501 ccgagcacca cacagcttac tgctggaagc cccgtgcgct cggcgatctg cgcgccggtg
     1561 atactgaaca gcgcgagccc cagcgcatcg gcgaggagaa gcgcggaacg cggcggcggt
     1621 cgccagcgcg cgtatgcgac ggtgagcagc gcggacgctg caatgacaag aacgtacgac
     1681 gcattggcga gccagaagat cgggctgcgg tccagcagca cgtcgcgtat cgtgccgccg
     1741 ccgatcgccg tcacgagcgc gagtaccacc acgcccagaa gatcgagctg ctttcgaccg
     1801 gcggcaagcg caccgctgac ggcaaacacc gacacgccta caaagtcgag tactgcgggt
     1861 agtgtcacgc gatgctcgcg cgctataccg gcattccgta acgatctctc agtatgccga
     1921 tgtgatgcgt ggcgtggccg gtgatgacgt aggcgagcgc acgcgcactg accgtaaatc
     1981 cgctcgccgt tccggttcgc agccatgcat caccgtgaat ctcgtttgcg agcgcgatcg
     2041 tcgccgcgcg cgtcgtgcgg aacgagtcga cgagtgcacc gatcgccatg ctgtcgaaat
     2101 gggccgcgtc gacgtatggc tgctgatcga agccgggtag cggtgtcttg tcaccacgcg
     2161 cgatccgcag catgcggcag gcaaagattc gctcgccgtc ggtgatgtga cccacgacct
     2221 ccttcacact ccacttgtcc ggcccgtaac gatgcagcgc gcgggtatcg tcaagcgcag
     2281 cgagcgggtc cagggcaccg agctgagtga cgagcgtgtc cagcgcgttc tggcccgcga
     2341 cgggtgcgat gtaggtgttg tagtatggcg cgtattcgtc agcggcagga tgggatagaa
     2401 tctgagtcgt catcagttcc cttgggttac caggctatca gcgctccgat gccgtatggc
     2461 acagcggccg tgcacgccgg cgcggtgccg acgtagctct ggtccaaggt agcgacttcc
     2521 gatcgtagtg agaactgcat ctcccatacg cgtccgctcg cgaggtacgt ccgctcccct
     2581 gcggtgtagt ccatctcgag ccggacgcaa cagatcctgt cctggggaat gcgcgcattg
     2641 tcgagctggg cgtgcagcca gagccgaagc cggtcaacga gcccgatcgc attcacgtcc
     2701 gcgtcattga gcgtgcagcg gcgcgtaagg acatccagca cgagcaggcc gccatgcgga
     2761 tgattgagcc gcacctcgtt gggatagcgc cgatccaccg tgaccatgtt gcacaacgag
     2821 ttggcaacgg tctggagcgc cttgtggcgc tgcctgtcgc gtctggtcca tgcatttcga
     2881 cccatgtcgg acaccagcgc caggggtgac acatagtctg taagagcggc gagccacagc
     2941 gtcggccggg cgttcatgca gcaatcctgg tgattacagt cattggcaca atgcggtggc
     3001 tccggatcta tcgtagaaaa cggtctgcaa gctggaccag gcgatcgtcg ttcgcggctt
     3061 ccgccctgtc acggatccgg cgaacatgct cgtgcagcct gcgctcgccc cagtagtatc
     3121 cggtcgcatc ttccgcgctc gcggtctcgc cagctcgcgc ggcttcgagt agcgcggcgg
     3181 cggcagcggc atcgaacgcg gggtcatcac gcgggggaag cgcgtagttg cggcgcggga
     3241 ccgttccacc tgcatcttcg ttgacaaatg ctcgcgacaa gtcgggccgg ttagggttgg
     3301 gctgtgggtg aagatgtccg cgttgcaaga tcggtactag agcccggggc gggcggcggc
     3361 gaacggcgcg gaaaagccgt catccctgcc atatggtcgt gtccggagcc gtcacggtgc
     3421 gaccatatgt ggcggaaacg cc
//
LOCUS       DATIMD010000629         1895 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_270946, whole genome shotgun sequence.
ACCESSION   DATIMD010000629 DATIMD010000000
VERSION     DATIMD010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270946"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..461)
                     /locus_tag="VLI40_14080"
     CDS             complement(<1..461)
                     /locus_tag="VLI40_14080"
                     /inference="COORDINATES: protein motif:HMM:NF025042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4147 domain-containing protein"
                     /protein_id="HSU98360.1"
                     /translation="MYDAAIDAAAPDAATARAVDALKIDRASRVWVFSFGKAAAPMAA
                     AAVASLLKSLHSIVGGVIVSPDAGASPYPTVLSMRGDHPIPGHNSFAAAAKIAEVTSG
                     RRGNDVAVVLISGGASSLIGAPLRGTSETDFIALCELLLGSGLDIAAMNAVR"
     gene            complement(526..1122)
                     /locus_tag="VLI40_14085"
     CDS             complement(526..1122)
                     /locus_tag="VLI40_14085"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_except=(pos:complement(868..870),aa:Sec)
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HSU98361.1"
                     /translation="MSTVTTARSVRLLALLALGASTRLLAQQPQPGSAATAPDVGQAA
                     PDFTLPGATRFGTLKNPVKLSDYRGQTVVLAFFPKARTKGUTVQMEAYRDQYATLFNN
                     GKKVVVIGISTDADTTQANWAHDSGFPNLFASDPDQTVAKLYGSADNKLDTRNVFVVG
                     PDGKISARIMRFNVLSGDAYTELGKDVAATLKTAGPSH"
     gene            1500..1850
                     /locus_tag="VLI40_14090"
     CDS             1500..1850
                     /locus_tag="VLI40_14090"
                     /inference="COORDINATES: protein motif:HMM:NF024879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YMGG-like glycine zipper-containing protein"
                     /protein_id="HSU98362.1"
                     /translation="MSPTEAGLAAQPQNLQAVARQPVYSAPVRRTSTVRRSSGSSRAS
                     SGGGGYYPAPTPPTRVEKHTGRDAAIGAAAGAVLGGVSSRDKIKGAVIGAAAGGILGA
                     VIGNNVDIQRKTGW"
BASE COUNT          368 a          542 c          641 g          344 t
ORIGIN      
        1 cgcacggcat tcattgcagc gatgtcgagg ccggatccga gcagcagctc gcatagcgcg
       61 atgaagtcgg tctcgctcgt gccgcgaagt ggcgcgccga tgaggctcga cgctccgcca
      121 gaaatgagca cgaccgccac atcgttgcca cggcggccag acgtcacctc ggcgatcttt
      181 gccgcggcgg cgaacgagtt gtgcccaggg atgggatgat cgccgcgcat cgacaacacg
      241 gttggatatg gcgaagcgcc agcgtcaggg ctgacgatca caccaccaac aatcgaatgc
      301 agcgatttga gcagcgaggc aacagcggcg gcagccatgg gcgccgccgc tttgccgaat
      361 gagaaaaccc aaacgcgcga tgcgcgatcg atcttgagcg cgtccaccgc gcgagccgtc
      421 gccgcatcag gcgcggcggc atcgatggcg gcgtcataca actccaataa caatcccgcg
      481 gcagcgatgc ggacgggcgc cggtgccgcg ttcgcgctaa tgctgttaat gcgacggtcc
      541 cgcggtcttc agcgtggccg ccacgtcctt gccgagctca gtgtaggcgt cgcccgaaag
      601 gacgttgaac ctcatgatgc gggcggaaat ttttccatca ggaccaacga cgaacacgtt
      661 tcgcgtgtcg agcttgttgt cggcagagcc atagagcttg gcaacggtct ggtcggggtc
      721 actggcgaac agattcggga atcccgaatc gtgtgcccag ttcgcctgcg tcgtatccgc
      781 atcggtgctg atgccaatca cgacgacttt ctttccgttg ttgaagagcg tggcgtactg
      841 atcacggtac gcctccattt gaaccgttca gccctttgtc cgcgccttgg gaaagaacgc
      901 gagtaccacc gtctgtccac ggtagtcaga gagcttgacg ggattcttca acgtgccgaa
      961 acgcgttgcg cctggcagtg taaaatctgg tgcggcttgt ccaacgtcgg gtgcggttgc
     1021 ggcggatcca ggctgaggct gttgcgcgag taggcgtgtc gacgcgccga gcgcgagcag
     1081 agcgaggagt cgaacggagc gcgcggttgt caccgtgctc atgcggcgtg aacctcagtg
     1141 tgagtatggc gggcaagatg ggaccttcgg gcttgtgatg caatgtccga gcgacgccgg
     1201 cgccatgtcg ctcggaggac acttggtgtt tcctcgagtg gacgcctgtc cgcggaaact
     1261 ccgcgaagcc ggggttaata gtcggaacgg cacgtgccta ctaaccaagg tggattttac
     1321 gaagacctta gacggagatt gcgatgcgca caatgcgtag tctgaaatgg gcggttctag
     1381 ttccggcggc ggtcttggct gtggcgtgcg gacggaacag cgcgcctgcg ctcgacgatg
     1441 ctctcaagag cgatctagca ttggcctcgc aggctcagcc atataaccca cagcagttca
     1501 tgtcgccgac tgaggcaggg ctcgcggctc agccgcaaaa tctgcaagca gtcgcgaggc
     1561 agccagtgta cagcgcgccg gttcggcgta cgtcgaccgt gcgccgctcg agcggaagct
     1621 cgcgtgcgag cagcggtggt ggcggatatt acccggcacc aactccgccg acgcgagttg
     1681 aaaagcacac cggccgagat gcggcgatcg gcgctgcggc tggtgcggtg ctcggtggcg
     1741 tgtcgagccg tgacaagatc aagggtgccg tcatcggtgc ggcggccggc ggaattcttg
     1801 gcgcggtgat cggcaacaac gtcgacattc agcggaagac tggctggtaa gacaatcggc
     1861 atctcgatgg agatgtgaat gagagaggcg ggggg
//
LOCUS       DATIMD010000630         4157 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1432046, whole genome shotgun sequence.
ACCESSION   DATIMD010000630 DATIMD010000000
VERSION     DATIMD010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4157
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1432046"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..434)
                     /locus_tag="VLI40_14095"
     CDS             complement(138..434)
                     /locus_tag="VLI40_14095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98363.1"
                     /translation="MASRPEQVTVRDTVVRYFHQRAPVDQVQQAVLEAGRSMQADGMT
                     MEDILVTLKGAVRLAADHVNQPSTPERAAWLRTQITPWLVSLYIGNGEEPADDV"
     gene            complement(436..903)
                     /locus_tag="VLI40_14100"
     CDS             complement(436..903)
                     /locus_tag="VLI40_14100"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSU98364.1"
                     /translation="MITRKATPHDAASISALIDLYVPSGTLLPRSEEFIVMHAHEFVV
                     VEREGEVVGCVHLDEYSPSLAELRSLAVAPGAQGLGIGKALVAATERFARARDYATLF
                     AVSNDTEFFARFGFARRTIPELDLERSEVSRYKGVFAKDLPPAGSGSPGVSPW"
     gene            complement(963..1271)
                     /locus_tag="VLI40_14105"
     CDS             complement(963..1271)
                     /locus_tag="VLI40_14105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98365.1"
                     /translation="MLSDYTQVAPLIEIFELYMLRDATLADLREPTVIATRAMLDAGL
                     APEMILSVLDGAVQIAADETVSAHTADHARELRENIVPWLIGECFDPIVSSGPVLPVA
                     "
     gene            1453..1824
                     /locus_tag="VLI40_14110"
     CDS             1453..1824
                     /locus_tag="VLI40_14110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSU98366.1"
                     /translation="MNTKVRHFRWDSMPKEVVTDSISRRLITGDDMMLAHVYLDKGAI
                     VPQHSHHNEQLTYIVEGALHFWIGADGKEEVIVSAGEVLHIPSNVPHRAEALEDTLDV
                     DIFSPPREDWLNGTDSYFHNK"
     gene            1827..2621
                     /locus_tag="VLI40_14115"
     CDS             1827..2621
                     /locus_tag="VLI40_14115"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU98367.1"
                     /translation="MDLGIKGKVALVTASSRGLGRAVAEELAAEGANLLLCARNESTL
                     GETAEAIRKSSSGVKVVSVVADISDPAAVERVWNSARDEFGRVDILVNNAGGPPAGPF
                     EAHSPSAWTDAWRLTFESAVNMTRSVLPGMKQRLWGRIINITSIAVKQPVDGLILSNS
                     VRAAVTGFARTLANEVATYGVTVNNVMPGYTLTDRIAHLAESNAARRGTTVESEIAGM
                     ESQIPMHRLGTPREFAAMVAFLASDRASYTTGASIPVDGGWIRSLL"
     gene            complement(2613..4061)
                     /locus_tag="VLI40_14120"
     CDS             complement(2613..4061)
                     /locus_tag="VLI40_14120"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSU98368.1"
                     /translation="MTDPILETLESDTLAESGAEIVALVAEYFNSTRDGAGAVSTDLT
                     PEEISVRFDEPLPRGGQPLGRVAQRLRTDVMADANRLYHPMYMGHQVAPPLPAAVWTE
                     PLISVMNQSVAVWEMSPTATVIEHRVIRWMTDLVGWDEASGGTLTSGGTEATFTALLA
                     ARNAIIPDAWTDGVGANPPIVLCGEHAHYAVSRALGELGLGVRNLVTIPSRDFRMDPD
                     ALDRALVHARAGDRAVMAVVATAGSTATGSFDDLEAIAEICDAHGVWLHVDGAHGASA
                     LLSASRAAALRGLARARSLAWDPHKGMLLPIATGMLLMRDDQDLQRAFAQRAPYLFHE
                     RAGARAWDLGKESFQCSRRADVLKLWVALQRYGADGIGRVYDHLCDVTHDLYNEIAAR
                     SDFEALHEPESNILCFRYVGNGDMGVDATDALNRNLRAAYNRSGKGWITLTVLEGRPV
                     LRVTLMNHRTRIHHTRALLDGLAAEAARLMSE"
BASE COUNT          827 a         1349 c         1261 g          720 t
ORIGIN      
        1 acgtgctcct ggatatgccc gggccaacgc aggcggagcg ctgggtggag cgcggttggg
       61 tctttcatgt gttgaaagtt ggcgccagag cgcgaatcta caactctgct gggacgaacg
      121 ggaaagtcac cgtacgatca gacgtcgtcg gccggctcct ctccgttgcc gatgtacagc
      181 gaaaccagcc atggagtgat ctgcgtccgg agccacgccg cgcgttccgg cgtggagggt
      241 tggttgacgt ggtccgcggc gagccggacc gcgcccttga gggtgaccag aatgtcttcc
      301 atggtcatgc cgtcggcctg catcgaccgg ccggcctcca gcacggcctg ctgcacctgg
      361 tcgaccggcg cccgctgatg gaaatagcgc acgacggtgt cgcggacggt tacctgctcc
      421 gggcggcttg ccaccttacc agggcgacac gccgggcgag ccggagcctg cggggggcag
      481 atctttcgca aagacgccct tgtatcgact gacttcgctc cgctcgagat ccagctccgg
      541 aatagtgcgg cgcgcgaatc caaaccgtgc aaagaactcg gtgtcgttgc tgactgcgaa
      601 gagcgtcgcg taatcgcgtg cgcgggcgaa ccgctcggtg gccgcgacga gtgccttgcc
      661 tattcccaga ccctgcgcgc cgggcgcaac ggcgagcgag cgcagctctg ccagactggg
      721 cgaatattcg tcgagatgca cgcagccgac cacctcgcct tcccgctcca ccactacgaa
      781 ctcatgcgca tgcatcacga tgaattcctc cgagcgcggg agaagtgtgc cgctcggcac
      841 gtagaggtcg atcagcgcgc tgatcgacgc tgcgtcatgt ggggtcgcct tgcgagtaat
      901 cacgacctca aaatgtggag ctgcgccggg acgcgccagc cccgtttttc attcatttta
      961 cgttacgcca ccggcagcac cggtccgctc gacacgatcg ggtcgaagca ctcgccgatc
     1021 agccacggca cgatgttttc cctgagctcg cgcgcgtgat cggcagtatg agcgctcacc
     1081 gtctcgtccg cggcaatctg caccgcccca tcgagcacac tcaaaatcat ttccggcgcg
     1141 agacccgcat ccagcatcgc acgcgtcgcg atgaccgtcg gctcccgaag gtcagccagg
     1201 gtcgcatccc gcagcatata gagctcgaag atctcgatga gcggtgcaac ctgcgtatag
     1261 tcagagagca taggaacgag cggcgaatcg ggttgcaggg tccggcgaat accggcgacg
     1321 aagcagggat tcgcaattcg cttgccggga cgtatgttcc cgggacatag gagcctgcaa
     1381 acaacggcat cgacgagacg ccgtatgttt cggcgccgtg agccatccat tcacccctca
     1441 actgaagcca cgatgaatac caaggtgcgc cactttcgct gggacagcat gccaaaggag
     1501 gtcgtgacag acagcatctc ccgcaggctc atcacgggcg acgacatgat gctcgcgcat
     1561 gtctatctcg acaagggcgc aatcgtgcca cagcactccc atcacaacga gcagctcact
     1621 tacatcgtcg aaggcgctct gcacttctgg atcggcgcgg acggaaagga agaagtgatc
     1681 gtaagcgcgg gcgaggttct gcacattcca tccaatgttc cgcaccgcgc cgaggcgctc
     1741 gaagacacgc tcgacgttga catcttcagc ccaccgcgcg aagactggct gaacggaacc
     1801 gacagctact tccacaacaa atagcgatgg acctgggaat caaaggcaag gttgcgctcg
     1861 tcaccgcatc cagtcgcgga cttggtcgag ccgtagcaga agagctcgcg gcagaagggg
     1921 caaacctcct gctgtgtgca cgaaacgaat ccacgctcgg cgagacagcc gaagcaatac
     1981 gaaagtcgtc cagcggagtg aaggttgttt cggtggtggc cgacatctcc gatcccgcgg
     2041 cagtcgagcg cgtctggaac agcgcgcgcg acgaattcgg acgtgtcgac attcttgtca
     2101 acaacgcagg tgggccgccg gccggtccgt tcgaggcaca ctctccgtca gcgtggaccg
     2161 atgcctggcg gctgacgttc gagagcgctg tcaacatgac gcggtcggta cttccgggaa
     2221 tgaagcagcg cttgtgggga cgcatcatca acatcacgtc gatcgccgtc aagcaacctg
     2281 tcgatggcct gatcctctcg aacagcgtga gagcggcggt taccggcttc gcgcgtacgc
     2341 tggcgaacga agtcgcgact tatggagtga ccgtgaacaa cgtgatgccc ggttacacac
     2401 tcaccgatcg catcgcacat cttgcggaga gcaacgcggc gcgccgcggt accacagtcg
     2461 aatcggagat cgcagggatg gagtcgcaga tccccatgca ccggctcgga acaccgcgtg
     2521 aattcgcggc gatggtagcg ttcctggcgt cggatcgcgc aagctatacg acaggtgcat
     2581 cgatacccgt cgacggaggc tggatccgct cgctactctg acatcagtct cgcggcttct
     2641 gccgcgaggc catcgagcag ggctcgcgta tggtgtatgc gcgtgcggtg attcatcaac
     2701 gtcacgcgca gcaccggacg tccttccaac accgtaagtg tgatccatcc cttccccgag
     2761 cggttgtagg ctgcacggag attgcggttg agggcatccg tagcgtcgac gcccatatcg
     2821 ccgttaccga cgtaacggaa gcacagaata ttcgattccg gctcatgcag cgcctcgaaa
     2881 tcgctgcgtg ccgcaatctc attgtacaga tcatgcgtca cgtcgcacag gtgatcgtaa
     2941 acgcgaccga ttccatccgc gccataccgc tgcagcgcga cccacagctt caacacgtcc
     3001 gcacggcgcg agcactggaa gctttccttg cccagatccc atgcacgcgc gccagcgcgc
     3061 tcgtgaaaca gatagggtgc gcgctgcgcg aaggctcgct gcagatcctg atcgtcgcgc
     3121 atcagcaaca tcccggtcgc gatcggcagg agcatcccct tgtgcggatc ccacgcaagc
     3181 gagcgtgcgc gtgccaatcc gcgaagcgct gccgctcgtg aggccgacag gagtgccgac
     3241 gccccatgcg cgccatccac gtgcagccac acaccgtgcg cgtcgcaaat ttcagcgatc
     3301 gcttcgagat catcgaatga tcccgtcgcg gtcgagccgg cggttgccac gaccgccatc
     3361 accgcccggt cacccgcgcg cgcgtgaacc agcgcgcgat cgagcgcgtc gggatccatc
     3421 ctgaaatcgc gcgacggaat cgtgacgagg ttgcgcacac cgagtcccaa ctcaccgagc
     3481 gcgcgggaaa ctgcgtaatg cgcgtgctcg ccgcacagaa cgatcggagg attcgcgccg
     3541 acgccatcgg tccacgcgtc cggaatgatc gcgttgcgtg cggcgagcag agccgtgaac
     3601 gttgcctcgg tgccgcccga cgtgagtgtc ccgccgctgg cctcgtccca tccgacgaga
     3661 tccgtcatcc agcgaatcac gcgatgctcg atcaccgtcg ccgtgggcga catctcccag
     3721 acagcgaccg attgattcat cacgctgatg agcggctcgg tccatacggc tgcagggagt
     3781 ggcggcgcga cctgatgacc catgtacatg gggtgataca gccggttggc gtccgccatc
     3841 acgtccgttc gcaggcgctg cgcgacgcgc ccgagcggct gtccaccgcg tggtagcggc
     3901 tcatcgaacc gcaccgaaat ctcttccggc gtgagatctg tggagacggc acccgcaccg
     3961 tctcgcgtgg agttgaagta ctctgcaacg agagcgacaa tctcggcgcc agattccgcc
     4021 agagtgtcgc tctccagtgt ttcgaggatc ggatccgtca tccgatcaat ctatcaaaac
     4081 atctcccaac acctctaccg gcgcacgcta ccagctcatc gcgatcacca gtcgcgtcca
     4141 cgcctcggca cgctcac
//
LOCUS       DATIMD010000631         3521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4318073, whole genome shotgun sequence.
ACCESSION   DATIMD010000631 DATIMD010000000
VERSION     DATIMD010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3521
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4318073"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /locus_tag="VLI40_14125"
     CDS             complement(<1..279)
                     /locus_tag="VLI40_14125"
                     /inference="COORDINATES: protein motif:HMM:NF013355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase catalytic subunit"
                     /protein_id="HSU98369.1"
                     /translation="MTDLAITAAGVQFQNPIMLASGTAAFGRALDGVVDLDALGGIVT
                     KAVSLEPRGGNAAPRVAEFDGGMLNAVGLANPGVDAVKRDDLPWLAEHV"
     gene            complement(276..1586)
                     /locus_tag="VLI40_14130"
     CDS             complement(276..1586)
                     /locus_tag="VLI40_14130"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: protein motif:HMM:NF013670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HSU98370.1"
                     /translation="MIVAGLVLLLQTAATVGRQTNARAQAAPAPPESVVVRTPARTST
                     LRLTATGGITGVDAAKLASALGGTFKLTSPSHYSLTVGDSHISFTDAVPFAGDDSTIV
                     PMTSPPRVVGKNVILPFFVVTELVPRFFSGYMYDPDLHEVRQFDSTARRVQAPATAPP
                     DTPAAGATPREIGEAAAIARVASETPVRVKRPGRRLIVVDAGHGGVDPGMHGPIGGGP
                     QILEKNITLAVSKLLAAALRDEGADVLMTRTTDTLIGLYDRGPIANKARGDIFVSIHV
                     NATGQRGAAGVRDRGYETYFLAEAKTEDAKRVERMENEAVRFETTDASAKKGDPLNFI
                     LNDMAQNEHLRESADLAEQIESGFRSFHPGPDRGVQQANFAVLRGAFMPAVLVEIGFG
                     TNKAEAAYISDPDNERKIARSIAKSIMAYMDRYDARVGGRSSGK"
     gene            complement(1583..2053)
                     /gene="smpB"
                     /locus_tag="VLI40_14135"
     CDS             complement(1583..2053)
                     /gene="smpB"
                     /locus_tag="VLI40_14135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HSU98371.1"
                     /translation="MPDVTATPARQSIAKNRRASHDYQLLETWEAGIALTGTEVKALR
                     DGKANISDAYGIVRDGEVYLLNLHISPYERGGYVNHEPTRTRKLLLHKKEIRKMIGAV
                     ERQGLTLVPLELYFKGGRAKVALALGKGKKLHDKREDARKRDDERDMARAMRRS"
     gene            2205..2288
                     /locus_tag="VLI40_14140"
     tRNA            2205..2288
                     /locus_tag="VLI40_14140"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2239..2241,aa:Leu,seq:cag)
     gene            complement(2324..2785)
                     /locus_tag="VLI40_14145"
     CDS             complement(2324..2785)
                     /locus_tag="VLI40_14145"
                     /inference="COORDINATES: protein motif:HMM:TIGR00738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HSU98372.1"
                     /translation="MMRITTWAEYGVICALHLARRSDDGPVTGRDIAAQERLPADYVE
                     QILLRLRRADVIKSVRGARGGYMLARPSSEITIRDVIHASELETFDLHCISHPVEEER
                     CAASHNCSIRPIWVMLQQKIDDVLDSVHLSDLLHDEPTVRERIGLPILETV"
     gene            complement(2835..>3521)
                     /locus_tag="VLI40_14150"
     CDS             complement(2835..>3521)
                     /locus_tag="VLI40_14150"
                     /inference="COORDINATES: protein motif:HMM:NF025015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1648 domain-containing protein"
                     /protein_id="HSU98373.1"
                     /translation="RNKMRDHNRLISFLLVVAAFAISIVAFPHLPATVPTHWGISGKP
                     DHFGSRIQGAFLLPVVMLATWFIVSFVPRYDRSLFIKYDERQSDESTVRPAYNVVIVV
                     VLASMLAIHAFAITSSLGLVAQQKLPLLLALIISVGMVLIGNYLPQVTRRNAFIGVRF
                     PWAYASEEVWRRTQRAGGYGMVAAGILGMIGAIAFPQSPVKPLFAALLAQLIVVAIYS
                     YYLAHSARVP"
BASE COUNT          646 a         1063 c         1142 g          670 t
ORIGIN      
        1 cacgtgttcg gcgagccacg gcagatcatc gcgcttcacc gcgtcgacgc cgggattcgc
       61 gagaccgacg gcgttgagca ttccgccatc gaattccgcg acgcgaggtg ccgcgttgcc
      121 gccacgcggc tcgagactga cagcctttgt tacgatgccg cccagcgcgt cgaggtcgac
      181 cacgccgtcg agcgcgcggc caaatgcggc agttccggac gcaagcatga tcgggttctg
      241 gaactgtaca ccagctgctg taatagcaag gtcggtcact tgccgctgct cctgccgcca
      301 acgcgtgcgt cgtacctgtc catgtacgcc attatcgact tcgcgatcga gcgagcgatc
      361 tttcgctcgt tgtcgggatc actaatgtac gcagcctcgg ccttgttggt accgaagccg
      421 atctcgacca gtaccgcggg catgaacgca cctcgcagaa ccgcgaagtt cgcctgctga
      481 acgccacgat cgggtcctgg atgaaaggac cggaaaccgg actcgatctg ttcggcaaga
      541 tcggcacttt cgcgcaggtg ctcgttctgc gccatgtcgt tgaggatgaa gttgagcgga
      601 tcgcccttct tcgcactcgc gtcagttgtc tcgaagcgaa cggcttcgtt ttccatgcgc
      661 tcgacgcgct ttgcgtcttc cgtcttcgct tcggcgagaa agtacgtctc gtaaccgcga
      721 tcgcgcacgc cggcggctcc gcgctggccg gtagcgttta cgtgaatcga aacgaagatg
      781 tcgccgcgcg ccttgtttgc gatcgggcca cgatcgtaca ggccgatcaa cgtatccgtg
      841 gtgcgcgtca tcagcacgtc ggcgccctcg tcacgcaacg cggcggcgag aagtttggaa
      901 acggcgagcg tgatgttctt ttcaagtatc tgcgggccgc caccgattgg tccatgcatg
      961 cccgggtcga caccgccatg gccggcatcg acgacgatca accggcgtcc gggccgtttg
     1021 acccgaacag gagtttcgga cgcgacacgt gcaattgccg cggcctcgcc gatctcacgg
     1081 ggcgtcgcac cagccgctgg cgtgtcgggc ggtgctgtcg cgggcgcctg cactcgccgg
     1141 gcggtgctgt cgaactgacg cacctcatgc agatcggggt cgtacatgta gcccgaaaaa
     1201 aagcgcggga cgagctccgt aacaacgaag aacgggagaa tgacgttctt tccgacgacg
     1261 cgtggagggg atgtcatcgg aactatcgtc gagtcatcgc ctgcaaacgg gacggcgtcg
     1321 gtgaagctga tgtgcgaatc gccgaccgtc agcgagtaat ggctgggcga ggtcagcttg
     1381 aacgtgccgc cgagcgcact tgcgagcttc gccgcgtcga cgccggtgat acctccagtg
     1441 gccgtgagcc gcaacgtcga tgtacgcgcc ggtgtgcgca ccacgacgga ttccggcggt
     1501 gcaggagctg cctgtgcacg agcgttcgtc tgacgaccaa ccgttgcagc tgtctgaagc
     1561 aggagaacaa gtcccgctac gatcatgaac gcctcatggc gcgcgccatg tcacgttcgt
     1621 cgtcgcgctt gcgcgcgtct tcacgtttgt cgtgaagctt ctttcccttg cccagtgcga
     1681 gagcgacctt ggcacggccg cccttgaaat agagctccag cggtacgagg gtgagtccct
     1741 gccgctcgac tgctccgatc atcttccgaa tctccttttt gtgcagcaga agcttgcgcg
     1801 tgcgcgttgg ctcgtggttg acatagccgc cgcgctcgta gggagagatg tggagattga
     1861 gcagatacac ttcgccatcg cggacaatac cgtaggcgtc ggagatgttt gcctttccgt
     1921 cgcgcagtgc cttgacttcg gtacccgtga gggcgatgcc cgcttcccag gtctcgagga
     1981 gttggtagtc gtgcgacgcc cttcggttct tcgcaattga ctggcgcgcc ggcgtggcgg
     2041 taacgtcggg catgggtgtc aagttaggta tgtggggcgg cgttgcgcca ccccgtccgt
     2101 gcggctatgt tgagaggctt ccggcgagtg gcgcgtgagt ggtacaccgc tctccgggat
     2161 ttgcgtcaga tcgagattgg cgcgctgcgg ctccgagccg cttcgctcgg gtggtgaaac
     2221 tggtatacac gcagcgctca gaacgctgtg gccgaaaggc cgtgcgggtt cgagtcccgc
     2281 cccgagcatg ccgcgcctgt tggcgcggcc caccacaaac cggctagacc gtttccagaa
     2341 tcggcaggcc gatgcgctcg cgcaccgtcg gctcgtcgtg cagcaggtcg gacaggtgaa
     2401 cgctgtcgag tacgtcgtcg atcttctgct gaagcatgac ccagatcggg cggatgctgc
     2461 agttgtgcga cgcagcgcag cgctcttcct cgacaggatg gctgatgcag tgcaggtcga
     2521 acgtctcgag ctcggacgcg tgtatcacgt cgcggatggt gatctcgctg gacggacggg
     2581 caagcatgta gccgccgcgg gcgccacgca cgctcttgat cacgtcggcg cgacggagtc
     2641 tcaggagaat ctgctcgacg tagtccgcag gcaagcgctc ctgcgcggcg atgtcgcggc
     2701 cggtcacagg gccgtcgtcg gaccggcgcg ccagatgcaa cgcgcagatt accccgtatt
     2761 ccgcccaagt agtgatccgc atcattggag gataccggtc ggaggggctc ggagcaaggc
     2821 cttgcggtcg agcctcaggg caccctggcg gaatgtgcga ggtagtacga gtagatcgcg
     2881 acgacgatca actgagccag gagggctgca aacagcggct tcactggcga ctgtggaaac
     2941 gcgatggcgc cgatcatccc gagaatgcct gctgcgacca tgccgtagcc gccagcgcgc
     3001 tgggttcggc gccaaacctc ctcacttgcg tatgcccacg gaaaccgcac gccgatgaag
     3061 gcgttgcgcc gcgtcacctg gggcagatag ttgccgatca ggaccatccc gaccgagatg
     3121 atcaatgcga ggaggagcgg gagtttctgc tgcgcgacga gcccgagcga gctggttatc
     3181 gcgaaggcat gtatcgcgag catcgacgca aggacaacga cgatgacaac gttgtacgcg
     3241 gggcggaccg tagactcatc cgattgccgt tcatcatact tgatgaacag ggaccgatcg
     3301 taacgcggga cgaagctcac gatgaaccac gtcgccagca tcaccacggg aagaagaaac
     3361 gctccctgga tcctgctgcc gaagtgatcc ggtttaccgg agattcccca gtgggtcgga
     3421 acagtcgccg gtagatgcgg gaatgccacg atggaaatcg cgaatgccgc aacgaccagt
     3481 agaaaggaga tcagccgatt gtggtcacgc attttgtttc g
//
LOCUS       DATIMD010000632         2851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5477649, whole genome shotgun sequence.
ACCESSION   DATIMD010000632 DATIMD010000000
VERSION     DATIMD010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2851
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5477649"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            227..751
                     /locus_tag="VLI40_14155"
     CDS             227..751
                     /locus_tag="VLI40_14155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98374.1"
                     /translation="MLRLNGDARSAPPDLLERHSIDLVQQIYSIRRLSELSHELRRHQ
                     RGFVNHFGWRAKFLHRGTETTNSTLRSAIQEVDIARRAYDAMHAQCIATYQNEIDGVL
                     VQTYDKIKEVRRQRIVVFASRVSAHPFDSAFDRAPAWRRSAEATMYACFDTSATEASR
                     FDFARSGRGSPPSS"
     gene            1246..2151
                     /locus_tag="VLI40_14160"
     CDS             1246..2151
                     /locus_tag="VLI40_14160"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU98375.1"
                     /translation="MIPVIAVSRLGKRYGRTIAVKDVSLEVFEGEIFGLIGPNGAGKT
                     TTMECVEGNRVPDTGTISVLGLDPRRDADALRQLIGVQHQEAQLQKRIKVWEAVDLWA
                     SLYPRIVDTDALLAQLGLGPKRDSWFMTLSGGQKQRLFIALALIHEPRVVFLDELTTG
                     LDPQARRAIWALVTGIRDRGTTVFLTTHLMEEAERLCDRVAIIEHGCIIESGTPAELV
                     QKHCPERTAVFTSDDADVAERMRVLGAVERNGATYTIHGAGDDFVTGVINVIAREGIR
                     VRGFRTEIPTLEDVFLKLTGHGIRD"
     gene            2151..>2851
                     /locus_tag="VLI40_14165"
     CDS             2151..>2851
                     /locus_tag="VLI40_14165"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSU98376.1"
                     /translation="MMPRGPLRGFWKLTWLETKIFMREPMGFVGALLVPLLVFVVLGR
                     AFGIGKPVAAPKPDIPFNVAILAVVLIAIGAVQSLVAIISIYREGGILKRLRSTPLTP
                     VTIMGAQVAVKLVFTVASLALLMLAGRRLFPGVMHVNVFSFTAAVVLSTFSILSLGFV
                     LASLVPTPRFAQPISAAVLYPMLALSGLFYPLDRFPRALRELAYLFPTTHAVALLQGV
                     WDGSGWGAHWENAAA"
BASE COUNT          509 a          897 c          856 g          589 t
ORIGIN      
        1 gcggcgctgg catgctacat tcctgcgcgc cgcgcagcac tcatcgatcc ggtcgttgcg
       61 ctgcgggcgg attgaatgcg tgtagtaaca gacagttgat cgccgacatg tttcagcgtt
      121 tcttccgtgc tcgcggggcg cctaacttcc gtacgtcgtc ttcgtccttt ttgcgaccag
      181 tcgcggtctt gttcgcgcga agctcgtcga gaccgattac gcgaatttgc tgcgcttgaa
      241 tggtgacgct cgtagcgccc ctccagacct gctcgaacgt cactccatcg atcttgttca
      301 gcagatctat tcgatacggc ggctttccga attgagtcat gagctgcggc gtcatcaacg
      361 aggtttcgtc aatcatttcg gttggcgcgc caaattcctc catcgcggca cagagacgac
      421 gaacagcact cttcgttcgg cgatacagga agtcgatatc gcccgtcgcg cgtacgacgc
      481 catgcacgcc caatgcatag ccacctatca gaacgaaatc gacggcgtgc tcgttcagac
      541 atatgacaaa atcaaggaag tccggcgaca gcgcatcgtt gttttcgcca gtcgcgtgtc
      601 tgctcacccg tttgactctg ccttcgatcg cgctcctgca tggcgacgct ccgccgaggc
      661 gactatgtat gcctgcttcg acacctcggc gactgaggcc agccgctttg acttcgcccg
      721 ctcgggacgt ggatccccgc cctcgtcatg aaggtagata tgacgacccg tccacgtccg
      781 tcgtcgccga gccgcccgtg ccgcgcgttc caacgctgct gccgacgcac ttcggatctc
      841 ggcagccgcg ccatccgggg ctctggcgac caccgtcact cctgcgatgc taagcagttt
      901 cagcgcggac tccaaactga cgttcgggcg ctggcccctc tccaattcag ccaccaaccg
      961 gacgctgacc cctccgcgat gagcgagttg cgcgcgactg agtttgagct ggcgacgggc
     1021 gttcttgaga agagcgccga tacggtccga aagcatgtac gctccgattg cgagatcatg
     1081 aataatatcg tcgctactat acagtcggaa gccctttatg taccagtccc tttatgtact
     1141 atccagaccc catcgtcaac tgcgtcaggg tcaggtcggt tcattgcaat ccagagcgaa
     1201 tggagattcg atggcgatga cgatctgtcg tcgctaagat tcatcgtgat tcccgtcatc
     1261 gccgtctcac ggctgggcaa gcgctacggc cgcaccattg cggtgaagga cgtctcgctc
     1321 gaagtgttcg agggcgagat ctttggactc ataggtccga acggcgccgg caagacgacc
     1381 acgatggagt gcgtggaagg caaccgcgtt cccgacacag gaaccatctc ggtgctcggc
     1441 ctcgacccac gacgcgacgc cgacgcgctc cggcagctca tcggcgtaca gcatcaggaa
     1501 gcacagctcc agaagcggat caaggtgtgg gaggcggtgg acctgtgggc ttcgctgtat
     1561 ccccgcatcg ttgataccga cgcgctgctc gcacaactcg ggctcgggcc aaagcgggac
     1621 tcctggttca tgaccctctc cggtggacag aagcagcggc tcttcatcgc gctggcgctc
     1681 atccacgagc ccagggtcgt ctttctcgac gagcttacca ccgggctcga cccacaggca
     1741 cgtcgcgcga tctgggcgct cgtgaccggc atcagagacc gtggcacgac ggtgtttctc
     1801 acaacgcacc tgatggaaga ggccgaacga ctctgcgacc gcgtcgccat catcgagcac
     1861 ggatgcatca tagagtcggg tacgcccgcc gagctggtac agaaacactg ccccgaacgg
     1921 accgccgtgt tcacgagcga tgatgcagat gtcgccgaac gcatgcgggt gctcggagcg
     1981 gtcgagcgta atggtgcgac gtacacgatt cacggcgcgg gcgacgactt cgtgaccggg
     2041 gtgatcaacg tcatcgcgcg cgaaggcatt cgcgtgcgcg gcttccgtac cgagatcccg
     2101 acgctcgagg atgtgttcct caagctgaca ggtcacggga tcagggattg atgatgccgc
     2161 gcggaccgct gcggggattc tggaagctca cctggctcga gaccaagatc ttcatgcgcg
     2221 agcctatggg cttcgtcggc gcgctgttgg tcccgctgtt ggtcttcgtc gtactgggac
     2281 gcgccttcgg catcggcaaa ccggtggctg cgccaaagcc tgacattccg ttcaacgtcg
     2341 cgattcttgc cgtggtgctg atcgcgatcg gcgcggtgca atcgctcgtg gcgatcatat
     2401 ccatctacag ggaagggggc atcctcaagc gcctccgatc cacgccgctc acaccagtga
     2461 cgatcatggg tgctcaggtc gcggtgaagc tcgtgttcac cgtggccagt ctcgcgctgt
     2521 tgatgctcgc cggccgcagg cttttcccgg gtgtgatgca tgtaaacgtg ttcagcttta
     2581 cagcggcagt ggttctcagc acgttcagca ttctctcgct cggattcgtg ctcgccagcc
     2641 tggtacccac gccgcgattc gcgcagccca tcagcgcggc ggtgctctat cccatgctcg
     2701 cgttgtcggg actgttctac ccgctggatc gattcccacg cgcgctccgg gagctggcgt
     2761 atctgttccc gacgacgcac gccgtggcgc tgctacaggg tgtgtgggac ggatcgggtt
     2821 ggggtgcgca ctgggagaac gccgcggcgt t
//
LOCUS       DATIMD010000633         3605 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_3450802, whole genome shotgun sequence.
ACCESSION   DATIMD010000633 DATIMD010000000
VERSION     DATIMD010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3605
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3450802"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(80..547)
                     /gene="tadA"
                     /locus_tag="VLI40_14170"
     CDS             complement(80..547)
                     /gene="tadA"
                     /locus_tag="VLI40_14170"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: protein motif:HMM:NF008113.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HSU98377.1"
                     /translation="MPHGSASDVEYLRQALELAREAAAAGEVPVGAVVVCGDEVVGRG
                     ANRTLRDNDPTAHAEMLAIREASRALGSWRLEGCTLYVTLEPCAMCAGAIVLARVDRV
                     VFGAWDAKAGMGGSVGDVLRHPKLNHRPEVLAGTLERECAAVLTEFFEARRID"
     gene            complement(534..3137)
                     /gene="clpB"
                     /locus_tag="VLI40_14175"
     CDS             complement(534..3137)
                     /gene="clpB"
                     /locus_tag="VLI40_14175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HSU98378.1"
                     /translation="MISQDKLTVKSGEALNDAVTRARQAGNPLVYDLHLLLALLDQDE
                     SIVVPVLQKVGVSVHALRQSALGEAARYPKQSDAQPSLSRELNQVLDRAEAIAKELGD
                     EYVSTEHMLLALSDVKGTESRTLLQTAGASYATLRDALAAVRGSHRVTDQTPENQYQA
                     LQKYTRDLTEAARKGKLDPVIGRDEEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIAEG
                     LATRIINGDVPESLRNKRLIALDLGALIAGAKYRGEFEERLKAVLKEITESEGLFVVF
                     IDELHTLVGAGKAEGSMDAGNMLKPMLARGELRVVGATTLDEYRKYIEKDAALERRFQ
                     PVFVGEPTVESTIAILRGLKERYESHHGVRITDGAVVAAATLSNRYIGDRFLPDKAID
                     LIDEAASRLRIEIDSMPQEIDEVERRVTQFEIERQALQKEKDPASVERLHTIEKDLSD
                     LRERSSAMKAQWQQEKESLGAVGRIKQQIEQARTEAEQATRNGDLGKAAEISYGRIPQ
                     LEQQMASAEKSLSSNTGGARFLKEEVGADDVAEIVAKWTGIPVSRMMEGERERLTKLE
                     SVLASRVIGQAEAVEAVSNAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTETARALAEF
                     LFDDEQAMTRIDMSEYMEKHAVARLIGAPPGYVGFEEGGQLTEAIRRRPYSVVLFDEI
                     EKAHPDVFNILLQILDDGRLTDSQGRTVDFKNTVIIMTSNVGSQYILENTGGDFDRVE
                     EQVISVLRQQFRPEFLNRVDDIIVFRPLGEEQITRIVDLQLNRLDQLLADRKLTIDLT
                     PEAKHYIAHEGYDAAFGARPLKRAIQRLLQNPLAMAVLEGRFVEGDTIRVGVDGSRGL
                     TFQSERETAAR"
     gene            complement(3252..3545)
                     /locus_tag="VLI40_14180"
     CDS             complement(3252..3545)
                     /locus_tag="VLI40_14180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98379.1"
                     /translation="MTSDIPEVIALVATLRHHLERDGTRDDVRDAVKKACLIMHANGV
                     PPQTMLVTLKSAVQTAALEAHAPVSRDAIRAVTSDLTPWMIDVCFRPQERSHR"
BASE COUNT          635 a         1202 c         1048 g          720 t
ORIGIN      
        1 gatggagcag taacaaaaga ggggagccgc gctaacggct cccctctttt gcattcggac
       61 gcgagcttcc gcccaacggt caatcgatcc ggcgcgcctc gaagaactcg gtcaacaccg
      121 ccgcgcactc acgctcgagc gtgccagcaa gcacttctgg tcggtggttc agcttcgggt
      181 gtcgcagtac gtcgccaacc gaccctccca tccccgcctt ggcgtcccac gcgccgaaca
      241 cgacacgatc gacgcgcgcg agcacgatcg caccagcaca catcgcacac ggctccagcg
      301 tcacgtacag cgtgcagcct tccagtcgcc agctacccag cgcgcgcgaa gcttcgcgga
      361 tcgcaagcat ctccgcatgc gcggtcgggt cgttgtcgcg cagcgtcctg ttcgcgccgc
      421 gtccaactac ttcgtcgccg cacacgacga ccgcgccgac cggaacttct ccggccgccg
      481 cggcttcgcg cgccagctcc agagcctgac gcaggtactc gacgtcgctc gcgctaccgt
      541 gcggcagttt cgcgctccga ctggaacgtc agtccgcgcg agccgtcaac gcccacgcga
      601 atcgtatcac cttctacaaa acgaccctcc agtacggcca tcgcaagcgg attctgcagc
      661 agacgctgaa tcgcacgctt gagtggacgc gcgccgaatg ccgcatcgta gccctcgtgc
      721 gcgatgtagt gcttcgcttc cggtgtgaga tcgatcgtca gcttgcgatc cgccaacagt
      781 tgatcgaggc ggttgagctg aagatccacg atgcgcgtga tctgctcctc gcccagcgga
      841 cggaacacga ttatgtcatc gacacggttg agaaactcgg gccggaactg ctgccgcagc
      901 accgagatca cctgctcttc cacacgatcg aaatcgccgc cggtgttctc gagaatgtac
      961 tggcttccaa cgttcgacgt catgatgatg acggtattct tgaagtccac cgtgcgaccc
     1021 tgtgaatccg tgagtcgtcc gtcatccagt atctgcaata gaatgttgaa tacgtcggga
     1081 tgcgccttct ctatctcgtc gaacagcacg accgagtacg gacgccggcg aatcgcttcg
     1141 gtgagctgcc cgccttcctc gaatccaacg taacccgggg gcgcgccgat caaccgcgcg
     1201 acagcatgct tctccatgta ctccgacatg tcgatgcgcg tcatggcctg ctcgtcgtcg
     1261 aacagaaact ccgcgagtgc acgcgcagtc tcggtctttc ccacgcccgt gggtcccagg
     1321 aaaatgaacg atccaatcgg acgattcgga tcctgcaagc ctgcgcgcga gcgccgcacg
     1381 gcgttcgata ccgcttccac ggcttcggcc tgaccgatga cacgacttgc gagcacggac
     1441 tcgagtttgg tgagacgctc tcgctcgcct tccatcatgc gcgacacggg aatgccggtc
     1501 cacttcgcga ctatctccgc aacgtcgtca gcgccgactt cctccttgag aaaacgagca
     1561 ccaccggtgt tgctcgacag cgacttctcc gcgctcgcca tctgctgctc cagctgcgga
     1621 atgcgcccat acgaaatctc cgcggccttg cccagatcgc cgttacgcgt cgcctgctcg
     1681 gcttccgtac gcgcctgctc gatctgttgc ttgatcctgc cgacagcgcc gagagattcc
     1741 ttttcctgct gccattgagc tttcatcgcg ctggagcgct cacgcagatc ggacagatcc
     1801 ttctcgatcg tatgcagtcg ctcgaccgat gccggatcct tctccttctg caacgcctgt
     1861 cgctcgatct cgaactgcgt gacccgacgc tcgacttcgt cgatctcctg cggcatcgaa
     1921 tcgatctcga tgcggagacg cgatgcagcc tcgtcgatca gatcgatggc cttgtcgggt
     1981 agaaagcggt caccgatgta gcggttcgac agtgttgcag cagcgacaac ggcgccgtcg
     2041 gtgatgcgca cgccatgatg cgattcgtag cgctccttga gtccgcgcag aatcgctatg
     2101 gtgctctcga cggtcggctc acctacgaac acgggctgga agcgacgctc gagtgcagcg
     2161 tccttctcga tgtacttgcg atactcgtcc agcgtggtcg cgccgaccac gcggagctca
     2221 ccgcgcgcta gcatcggctt gagcatgttg ccggcgtcca tcgagccttc ggccttgccc
     2281 gctccgacca gtgtgtgcag ctcgtcgatg aacacgacga acagtccttc gctctcggtg
     2341 atctccttga gcacggcctt gagccgctcc tcgaattcgc cgcgatactt cgcacccgcg
     2401 atgagcgcac ccaggtcgag cgcgatgagt cgcttgttgc ggagactctc ggggacgtcg
     2461 ccgttgatga tgcgtgtcgc gagtccttcc gcgatcgcgg tcttgcctac accaggctcg
     2521 ccgatcagta cagggttgtt cttggtgcga cgcgaaagca cctgcaccac tcggcggatc
     2581 tcttcatcgc gaccgatcac ggggtcgagc ttgcccttcc gcgccgcttc ggtgagatcg
     2641 cgcgtgtact tctggagtgc ctggtactga ttctccggag tctgatcggt tacgcgatga
     2701 ctgccacgca ccgcggcgag cgcgtcgcgc aacgtcgcgt agctcgctcc cgcggtctgc
     2761 agaagtgtcc gactttcggt tcccttgacg tcggagaggg cgagcagcat gtgctcggtc
     2821 gagacgtact cgtcgcccag ctccttcgca atcgcttcgg cgcggtcgag cacctggttc
     2881 agctcgcgcg acagcgacgg ctgggcgtcg ctctgcttgg gatatcgggc ggcctcgccg
     2941 agcgcagact ggcggagggc atgaacactt acgcccacct tctgcaggac gggcacgacg
     3001 atactctcgt cctggtcgag cagggcgaga agaagatgga gatcgtaaac gagcgggttc
     3061 cccgcctgcc gagcgcgcgt aaccgcgtcg ttcagcgcct ctccagattt gacggtgagt
     3121 ttgtcttggc tgatcatgcc cgaataatgt gcaatcgcgg tgcctcggat gtctgccgaa
     3181 acggcagagt cgggataggc actccgtcat cttcgtcgta ggcgaggatg acgacttcca
     3241 acgaacctca cctaccggtg tgacctctcc tgcggccgga agcacacgtc gatcatccac
     3301 ggggtcaggt ccgacgtcac tgcccggatt gcatcccggc tcaccggcgc gtgagcctcc
     3361 aacgccgccg tctgaacggc cgacttcagc gttacgagca tcgtttgagg gggcacgcca
     3421 ttcgcgtgca tgatgaggca ggcctttttc accgcgtcac ggacatcgtc ccgggtgccg
     3481 tcgcgctcca gatggtggcg gagcgtcgcg accagggcaa ttacctccgg gatgtcgctg
     3541 gtcatcccac atggttgcac aaaccttgag tttgcgccag tgcaaacatt cagtcgagat
     3601 gtggc
//
LOCUS       DATIMD010000634         2791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_5190944, whole genome shotgun sequence.
ACCESSION   DATIMD010000634 DATIMD010000000
VERSION     DATIMD010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5190944"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..477
                     /locus_tag="VLI40_14185"
     CDS             <1..477
                     /locus_tag="VLI40_14185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016706 - 2-oxoglutarate-dependent
                     dioxygenase activity [Evidence IEA];
                     GO_function: GO:0031418 - L-ascorbic acid binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+-dependent dioxygenase"
                     /protein_id="HSU98380.1"
                     /translation="LFMSAALPLKVFPPLFNRYEGGQSFGTHVDNSIRTVAGTPHRVR
                     TDLSATLFLSEPAEYDGGELSVEDTYGVHSIKLPAGDMILYPATSLHHVTPVTRGSRV
                     SSFFWIQSMVRDDGQRTLLFDLDATVQQLAADAPSHPAPVRLTGIYHNLLRRWADT"
     gene            536..1330
                     /locus_tag="VLI40_14190"
     CDS             536..1330
                     /locus_tag="VLI40_14190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98381.1"
                     /translation="MPITNGRPAAPDSRVLSLLAALTLVCLTSGAQVMSAQTSASAPS
                     SGVELLQRMHDRYAKSWYHSLSFTQSTEVHLPNDSVVHQTWWETASIPGYLRIRRLAN
                     DDRNVSIYRKDSLYTRRNGGPWQGRKLRNDLLVLGFDVYGQPADTSARILREEGYDLG
                     VISEGTWDGRPVWVVGAKSGDVTTPQFWIDKERLVYVHSIMRGIRDTTKTATVTFGDY
                     APLAGGWISRDVSIEEGGKLLQREVYRDIKANVDAPLAIFDPAQIP"
     gene            1401..>2791
                     /locus_tag="VLI40_14195"
     CDS             1401..>2791
                     /locus_tag="VLI40_14195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease H-like domain-containing protein"
                     /protein_id="HSU98382.1"
                     /translation="MTDATDEWLWGWDDTPGIVSIHADHDGRATVWRRIAETDALVRE
                     RERFRPWLLLAHIEDLDHLGSRLDHERKPAAEFHHRELDGPGALRHLVSAVDGRALAS
                     AVLRGASERLDRPLSHISELGHETVLALPPEEQYLVATGRNYFRNLPFDALHRMQFDL
                     ETTGLEPRLNRIFMISIRYHTGDTEVLETASDDDAAEADLIRRLVERVRVADPDVIEN
                     HNLHGFDLPFLDHRSRMLGVSLSLGRIASSGLRQRAARRGVRSDDASDRRRIRFVAPG
                     RELIDTLDAVRRYDFSTRELPGHGLKAVAKHLGIAAPDREYIRGDQIHATFRTDPDRV
                     RRYATDDVEEVAQLSRLLGGAAYALAQMVPRRYERLADAGAATGVIDPLIVRAYLRSG
                     AALPAHQPGDGTSHSGAALHLFAAGVAHRVVKADVASLYPSLMRTYRIGPKRDRLGVL
                     LALVDGLVERRLEA"
BASE COUNT          519 a          914 c          848 g          510 t
ORIGIN      
        1 ttgttcatgt ccgcggcgct gccgctcaag gtatttcccc cgctcttcaa cagatacgag
       61 ggcggtcagt ccttcgggac ccacgtcgac aactcgattc gcaccgtcgc tggaactccg
      121 catcgcgtac gcaccgatct ctccgcgacg ctcttcctgt ccgaaccggc ggagtacgat
      181 ggcggggagc tgtctgtcga ggatacgtac ggagtccaca gcatcaagct gccggccggc
      241 gacatgatac tctatcccgc taccagcctg caccacgtga cgccggtaac gcgtggctcg
      301 cgagtgtcgt ccttcttctg gatccagagc atggtgcgcg acgacggaca gcgcacgctt
      361 ctcttcgatc tcgatgcaac ggtccagcag cttgcagcgg acgcgccgag ccatccggca
      421 ccggtcagat tgacaggcat ctaccacaac ttgctgcgcc ggtgggcgga tacgtaactt
      481 ccagcggagc cagcccgtgg taagttcgta gtcgtcatcc acaccgatcc ccgaaatgcc
      541 aatcacaaac ggtcgtcccg cagcgcccga ttcgcgcgtc ctgtctctgc ttgccgcgtt
      601 gactctggtg tgcctgacga gtggtgcaca ggtcatgagt gcccagacgt cggcaagcgc
      661 gccgtcttcc ggcgtcgagc tgctccagcg catgcacgac cgctatgcca aaagctggta
      721 ccattcgctc agcttcacgc aatcgaccga agttcatctc cccaacgatt ccgtcgttca
      781 tcagacctgg tgggaaacgg catcgattcc tggctatctg cgcatccgcc gtcttgcgaa
      841 cgatgacagg aacgtcagca tctaccgcaa ggactcgctc tacacgcgtc gcaacggcgg
      901 tccctggcag ggtcgcaagc tgcgcaacga tctcctcgta ctcggcttcg atgtctacgg
      961 ccaacctgcg gatacatccg ctcggatcct ccgtgaggag ggatacgacc tcggcgtgat
     1021 ctcggaagga acgtgggatg ggcggcccgt ctgggtcgtc ggcgcgaaaa gcggtgacgt
     1081 caccactccg caattctgga tcgacaagga gcggctcgtg tacgtccact cgataatgcg
     1141 cggcatccgc gacacaacca aaacggcgac tgtcacgttc ggagattacg ctccgctcgc
     1201 cggcggttgg atctcgcgcg acgtatcgat cgaagagggc ggcaagcttc tccagcgcga
     1261 agtctaccgc gacataaagg ccaacgtcga cgcgccgctc gcgatattcg accccgcgca
     1321 aattccgtag cacgcctgcg cgaaattacg acgtcgcaaa gctggtacag tccgatcgca
     1381 accgcgcgtc tggcggccgc atgaccgatg caacggacga gtggctgtgg ggctgggacg
     1441 acacgccggg aatcgtatcg atccacgccg atcacgacgg acgtgcgacg gtctggcgcc
     1501 gcatcgcaga gaccgacgct ctcgtgcgcg agcgggagcg ctttcgaccc tggctgttgc
     1561 tggcgcacat cgaagatctc gatcatctcg gaagcaggct cgaccatgaa cgcaagccgg
     1621 ctgccgagtt tcaccaccgt gagctggatg ggccgggagc gttgcgccat ctcgtaagtg
     1681 cggtcgatgg ccgtgcactc gcctccgcgg tcctgcgcgg cgcgtcggaa cggctggacc
     1741 ggcctctcag tcacatcagc gagctcggcc acgagaccgt gctggcgcta cctccagaag
     1801 agcagtatct cgtagcgaca ggacgcaact actttcgcaa tctcccgttc gatgctctgc
     1861 accgcatgca gttcgatctc gaaaccacgg gcctcgaacc gcgactgaat cggatcttca
     1921 tgatctcgat ccgctaccac acgggcgata ccgaagtgct cgaaacagcg agcgatgacg
     1981 acgcggccga agcggacctg attcgccggc tcgtggagcg ggtgagagtt gccgacccgg
     2041 acgtgataga aaatcacaat ctgcacggct tcgacctccc cttcctggat caccgctcgc
     2101 gcatgctcgg cgtttcgctc tcgcttggca ggatcgcgag ttcgggattg cgacaacgcg
     2161 ctgcgcgacg cggagtacga tccgatgacg cgagcgatcg ccggcgcata agattcgtcg
     2221 caccgggccg tgagctgatc gacacgctcg atgccgtcag aagatacgac ttctccacgc
     2281 gcgagcttcc ggggcacgga ttaaaggcgg tcgcgaagca ccttgggatc gcggcgccgg
     2341 atcgcgagta catacgcgga gatcagatcc acgcgacgtt tcgcaccgat cctgatcgcg
     2401 tcagacgcta tgccaccgac gacgtcgagg aagtggcgca gctatcgcgc ctcctcgggg
     2461 gcgctgccta tgcgctcgcg cagatggtgc cgcggcgcta cgagcgactg gcggacgccg
     2521 gtgcggcgac tggcgtcatc gatccactta tcgtacgagc gtacctgcgt tcgggcgccg
     2581 cgctccctgc tcatcagccg ggcgacggaa cctcgcacag tggcgcggca ctgcacctgt
     2641 tcgccgctgg cgtcgcgcat cgcgtagtca aggcggatgt agcgagtctg tatccatcac
     2701 tgatgcgtac gtatcgcatc ggtcccaagc gcgatcggct tggcgttctt ctggcgctcg
     2761 tcgacggcct cgtcgagcgc cgtctggagg c
//
LOCUS       DATIMD010000635         3249 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1145265, whole genome shotgun sequence.
ACCESSION   DATIMD010000635 DATIMD010000000
VERSION     DATIMD010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1145265"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1605
                     /locus_tag="VLI40_14200"
     CDS             <1..1605
                     /locus_tag="VLI40_14200"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HSU98383.1"
                     /translation="VVESDTAVQVAASEADAAPVIQLTNMVLHAAIACNASDIHLEPG
                     RHQGVVRFRVDGVMRQYMQLPLIALTRVVSRIKILAKLDIADRLRPQDGRTRVSIAGN
                     TFDMRISTVPTRDAEKAVIRILNPDASRSLGDLGIADHELARLKYLLSFREGVVIVTG
                     PTGSGKTTTLYGGVRELAAQAINIMTVEDPVEYELPGVTQIQIDPKRDVTFASALRAI
                     LRQDPDVVFIGEIRDAETARIALQAAATGHLVLSTLHTNDAVGAVQRLIDLGLDRSAL
                     APALRGVVGQRLIRRLCSVCAIDQPEQRDAATVRLERAFGVRQARRAVGCKECGETGY
                     RGRIPLDEVLVNSPDFQEKLTRGATSQDLQRAAEKGGMRQIREVALGHVVIGNTTLDE
                     VERVLGEGEGPPERADERPRILVVDDDPVTRELAIGVLKASGFTVEQATDGQAALDLL
                     VHDSRFSLVTLDLSMPRVSGLDVLRQMRASAATSGVPIVVLTSTDGEEMEISLMNEGA
                     DDYLRKPLDPARFIARIRAVLRRSGN"
     gene            complement(1658..2173)
                     /gene="moaC"
                     /locus_tag="VLI40_14205"
     CDS             complement(1658..2173)
                     /gene="moaC"
                     /locus_tag="VLI40_14205"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001612668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HSU98384.1"
                     /translation="MSPAQNDEQNDEQPRLSHTNAAGEARMVDVSAKADTLRTATATG
                     DIRMSAAAITAIRDNTIAKGDVLGVARIAGIMAAKRTAELIPLCHQIALSHIDITLSM
                     DDAISGIHAEATAVSTGATGVEMEAIVAVSIALATIYDMAKSVDRSMVIGGVRLLRKS
                     GGKSGEYAAGA"
     gene            complement(2170..>3249)
                     /locus_tag="VLI40_14210"
     CDS             complement(2170..>3249)
                     /locus_tag="VLI40_14210"
                     /inference="COORDINATES: protein motif:HMM:NF024575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98385.1"
                     /translation="ISRMPIVPLTGHENIRRRLRRMIDAGSLPGSILFEGQRGIGKQR
                     LALWLAQLLVCEYADKPCGTCLACRSVLELRHPDVFWVYPRPRLSDSSATSDDVIEDL
                     GESSAERVENHGLYPRPSGSEAIFLATTLTIVGKAAMTPSMGHRKVFIVGDAERMVAQ
                     EGSDQAANAFLKLLEEPPSDTTILLTSSEPGALLPTVRSRVVSIRCAPLTDAEVLAFV
                     REPNVKAKLDSLDLPRGDAERVALARGAPGDLLSAAALSSARAAALTLLKASASRGAE
                     RYAVALAQGTAGARGAFSDMLAELNVLLRERAESSLSNGDTAGAYAAAKATIAVTEAQ
                     ARADGNVSPQLTAAALLDALQGVPA"
BASE COUNT          586 a         1057 c         1016 g          590 t
ORIGIN      
        1 gttgtcgaga gcgacaccgc tgtgcaggtt gcggcaagcg aggcagacgc agcgccggtc
       61 attcagctga cgaacatggt tctgcacgcg gcgattgcct gcaatgcgag cgacatccat
      121 ctcgagcccg gccggcatca gggagtggtc cggttccggg tggatggcgt catgcgacag
      181 tacatgcagc tgccgttgat tgcgctcaca cgagtggtgt cacgcatcaa gatcctcgcg
      241 aagctcgaca tcgccgacag actgcgtcca caggatggcc gcacacgcgt gtcgatcgcg
      301 gggaatacgt tcgacatgcg catctccacc gttccgacgc gtgacgccga gaaggccgtg
      361 attcgcatcc tgaaccccga cgcatcgcgc tcgctcgggg atctcggcat cgcggatcac
      421 gaactggcac ggctcaagta tctgctgtcc tttcgtgaag gtgttgtcat agtcactggt
      481 ccgacgggat ctggcaagac gacgacactc tatggcggtg ttcgtgagct ggcggcacag
      541 gcgatcaaca tcatgaccgt cgaagatccg gtggagtacg agctgccagg tgtcacgcag
      601 atccagatcg atccgaagcg cgacgtgacg tttgcgtccg cgctgcgcgc gattcttcgt
      661 caggaccccg acgtcgtgtt catcggcgag atacgcgatg cggagacggc caggattgca
      721 ctgcaggcag ccgcaaccgg ccacctcgtg ttgtccacgc ttcacaccaa cgatgcagtc
      781 ggcgcggtgc agcggctcat cgatctcggc ctcgatcgct ccgctctcgc gcccgcactg
      841 cgcggtgtcg tgggccagcg gctgattcgc cgtctgtgca gtgtttgcgc gatcgaccag
      901 ccggaacaac gcgacgctgc gaccgtgcgt ctcgagcgcg cctttggcgt ccgtcaggcg
      961 cgccgtgcag tgggttgcaa ggagtgtggc gaaaccggtt accgtggtcg cattccactc
     1021 gacgaagtac tggtgaacag tcccgacttt caggaaaagc tcacgcgcgg cgctacgtca
     1081 caggacttgc agcgcgctgc cgagaagggc ggaatgcgcc agattcgtga agtcgcgctt
     1141 ggtcacgtgg tgataggcaa cacgacactc gacgaagtgg agcgcgtact cggcgagggc
     1201 gagggtccac ccgagcgcgc agatgagcgc ccgcgcattc tcgtcgtcga cgacgatccc
     1261 gtcacgcgcg agctggcgat cggagtattg aaggcgagcg gattcaccgt cgagcaggcg
     1321 accgatgggc aggcagcgct ggacctgctg gtgcacgact cgcgattctc cctcgttaca
     1381 ctcgacctga gcatgccgcg agtgagtgga ctcgatgttc tcaggcagat gcgcgcatct
     1441 gcagcgacat cgggcgtgcc gatcgtagtg cttacgagca cagacggcga ggagatggaa
     1501 atcagtctca tgaacgaagg cgccgacgat taccttcgca agccgctcga ccccgcgcgt
     1561 ttcatcgcgc gcatccgggc ggtgttgagg cgctccggaa actagttagc tggtttttcc
     1621 ctcaagcgcc cgttcaagca ccggttcaag cgcccactca ggcgcctgcc gcgtactctc
     1681 ccgattttcc gccgctcttt cgcagcagtc gcacgccgcc gatgaccatc gatctgtcga
     1741 cgctcttcgc catgtcgtaa atagtcgcga gcgcgatcga cacggcgact atcgcttcca
     1801 tctccacacc cgttgcgccg gtgctcacag ccgtcgcctc agcgtgaatt ccggaaatcg
     1861 catcgtccat cgacagcgtg atgtctatgt gcgacagcgc gatctgatgg cacaacggaa
     1921 tcagctcagc ggttcgtttc gctgccatga ttccggcgat ccttgcaact ccaagtacgt
     1981 cgccctttgc aatcgtgtta tcacgaatcg cggtgatggc cgcggcagac atgcggatgt
     2041 cgcccgtggc ggtcgcagtg cgcagcgtgt cggccttggc gctgacgtcg accatgcgcg
     2101 cttcacctgc ggcattggtg tgactcagac gcggctgctc gtcattctgc tcgtcattct
     2161 gcgcgggact caagccggaa ctccctgtaa ggcatcgagc agtgccgcgg ccgtaagctg
     2221 cggactcaca tttccgtcag cacgagcctg cgcttcggtt actgcgatcg tcgccttggc
     2281 cgccgcgtaa gcaccggctg tgtccccgtt cgagagcgag gattccgccc gctcgcggag
     2341 cagcacgttc agttccgcga gcatgtcgct gaacgcaccg cgcgcccccg cagtcccctg
     2401 cgcaagggcg acggcataac gttcggcgcc gcgcgaagcc gatgccttga gcagcgtgag
     2461 cgcggcggcg cgcgcactcg agagtgcggc cgccgacagc agatcgcccg gcgcgccgcg
     2521 cgcaagcgcg acacgctccg catcgccgcg tggaaggtcc agcgaatcga gcttcgcctt
     2581 cacgttcggc tcgcgaacga acgccagcac ttccgcgtcc gtgagcggcg cgcagcgaat
     2641 gctcacaacg cgcgagcgca cggtcggcag cagcgcgccg ggctcgctcg acgtcaacag
     2701 aatcgtcgtg tccgaaggcg gctcctccag caatttgaga aacgcgttcg ccgcctgatc
     2761 cgagccttcc tgcgcaacca tgcgctcggc gtcaccaacg atgaagacct tgcgatgtcc
     2821 catcgacggc gtcatcgccg cctttccgac gatcgtgagt gtcgtcgcga gaaagattgc
     2881 ctcgctgccc gacgggcgcg gatacagacc gtgattctcc acgcgctccg cgctcgattc
     2941 tcccaggtcc tcgatcacgt cgtcggacgt cgctgacgaa tcgctcagtc gcggacgtgg
     3001 atagacccag aacacatcgg ggtgacgcag ctccagcaca ctcctgcacg cgaggcaggt
     3061 tccgcacggc ttgtccgcat actcgcagac gagcagctgc gccagccaca gagcaaggcg
     3121 ctgtttcccg atgccgcgct gcccctcgaa tagaatcgag ccgggaagag agccggcgtc
     3181 gatcatccgg cgaagccgcc tgcgaatgtt ttcgtggccc gtcaacggta cgatcggcat
     3241 gcgggaaat
//
LOCUS       DATIMD010000636         1881 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2298915, whole genome shotgun sequence.
ACCESSION   DATIMD010000636 DATIMD010000000
VERSION     DATIMD010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1881
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2298915"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1544
                     /locus_tag="VLI40_14215"
     CDS             <1..1544
                     /locus_tag="VLI40_14215"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HSU98386.1"
                     /translation="ENVRVVSPFTGGGFGSKGGPWSHVMLSAMAAKHVGRPVKLVLTR
                     RQMFGPVGGRPRTVQRITLGATRDGQLTAIRHISTSNSSMIEDWLEPSAMQTRMLYAS
                     PNAVTDHEIVRLNVGSPTFMRAPGESSGTYALESAMDELAVALKMDPVALRLRNYAER
                     DPQSGRPWSSKSLRQCYQVASERFGWSKRNPEPRSMRDGRLLVGWGMATATYPARTAP
                     SSTSVSVLPDGRAWVRSGTQEIGCGTYTVMSQIAADALGLPPDQVRFELGDTDMPPAP
                     VSAGSLTAASAGTSVYKAAVAARTKLIRMAITDPQSPLHGAAEQDVNVSDGRMSLASA
                     KSRGETYAALIARNGGTPVEVRVDSTPGAEQQEYSMHSFGAVFTEVHVDPDVGEIRVP
                     RVTTAHAIGRVLNAKTLQSQIIGGVVWGIGMGLLEQTLIDPHMGRYMNSDLAEYQVPI
                     NADIGTIDVTLIDEKDSYVNPIGVKGGGEIGITGVAASLANAIYHATGKRVRDLPITL
                     DKILV"
     gene            1541..>1881
                     /locus_tag="VLI40_14220"
     CDS             1541..>1881
                     /locus_tag="VLI40_14220"
                     /inference="COORDINATES: protein motif:HMM:NF014662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HSU98387.1"
                     /translation="MNDQGLVIRELERAATNGECVVLASIVRTEGSAYRGVGTRMIVR
                     ADDSPAGLVSGGCLESDLVERARDVRERNTTQIVTYDSRSDDDLVWGLGLGCDGMVQV
                     LVEPLSGEHAM"
BASE COUNT          371 a          579 c          603 g          328 t
ORIGIN      
        1 aggaaaacgt gcgcgtcgta tctccattca caggcggcgg cttcggcagc aagggcggcc
       61 cgtggtcaca tgtgatgctc tctgcaatgg ccgcgaagca cgtcgggcgg cctgtaaagc
      121 tggtgctcac acgcaggcag atgttcggtc cggtaggtgg acgtccgcgc acggttcagc
      181 gaataacgct cggcgctacg cgcgacggcc agttgacggc gatccgccac atcagcacct
      241 ccaattcgtc gatgatcgag gactggctcg agccttctgc gatgcagacg cgcatgctgt
      301 acgcatcacc gaatgcagtg accgatcacg agatcgtgcg gctgaacgtt gggtcaccga
      361 ccttcatgcg cgcgcccggc gaatcgagcg ggacatatgc gctcgaaagt gcgatggacg
      421 agcttgccgt tgcgctcaag atggatccgg tcgcgctgcg actccgcaac tatgcggaac
      481 gcgatccgca gagtggcagg ccatggtcga gtaaatcgct tcgccagtgc taccaggtcg
      541 cgagcgagcg gttcggatgg agcaagcgca atccggagcc acgctcgatg cgcgacggcc
      601 gcctgctcgt cggttgggga atggcgaccg cgacctaccc agcgcgtacc gcgccatcat
      661 ccacgtcggt gagtgtgctt cccgatggac gggcgtgggt gcgcagtggt acgcaggaga
      721 tcggctgcgg aacatacacc gtgatgtctc agatagccgc cgacgcactc ggcttgccgc
      781 ccgaccaggt gcgcttcgag ctgggcgaca ccgacatgcc gccggcgccg gtatccgctg
      841 gctcactgac cgctgcgtcg gcaggcacat ccgtctacaa ggcagcagtc gcggcacgga
      901 cgaagctgat ccgcatggcg atcaccgatc cgcaatcgcc gctccacggt gcggcagaac
      961 aggatgtgaa cgtctccgac ggccgcatgt cgctcgcgtc ggcgaagtca cgcggcgaaa
     1021 cctatgcggc gctcattgca cgcaacggcg gcacaccggt tgaagttcgt gtcgactcga
     1081 cgcccggtgc ggagcagcag gaatactcga tgcactcgtt cggcgcggtt ttcacggaag
     1141 tacatgtgga tcccgacgtc ggtgagatac gagtaccacg agtcaccacc gcgcacgcaa
     1201 ttgggcgcgt gctcaatgcc aaaacgttgc agagccagat catcggcggc gtcgtctggg
     1261 ggatcggaat gggattgctc gagcagactc tcatcgatcc gcacatgggc cgctacatga
     1321 actccgacct cgccgaatac caggttccaa tcaacgcaga catcgggacg atcgatgtaa
     1381 ctctcatcga cgagaaggat tcctacgtga atcccatcgg cgtgaagggc ggcggcgaga
     1441 ttggaatcac cggtgtcgcc gcgtcgctcg cgaatgcgat ctaccatgcc accggcaagc
     1501 gcgtgcgcga ccttccaatc accctcgaca aaatcctcgt atgaacgatc agggactggt
     1561 cattcgggaa ctggagcgcg ctgccacgaa cggcgagtgc gtggttctcg cttccatcgt
     1621 acgcaccgaa ggttctgcat atcgtggcgt cggcacgcgc atgatcgtgc gagccgacga
     1681 ttcacctgct ggtctcgtca gcggcggctg tctcgaatcc gacctagtgg agcgagcgcg
     1741 cgatgtacgc gagcgcaaca cgacacaaat cgtgacctat gactcacgct cggatgatga
     1801 cctcgtctgg ggactgggac tcggctgcga tggcatggtg caggtgctgg tcgagccgct
     1861 gtccggcgaa cacgcgatgc a
//
LOCUS       DATIMD010000637         3112 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_569501, whole genome shotgun sequence.
ACCESSION   DATIMD010000637 DATIMD010000000
VERSION     DATIMD010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569501"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(234..>3112)
                     /locus_tag="VLI40_14225"
     CDS             complement(234..>3112)
                     /locus_tag="VLI40_14225"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSU98388.1"
                     /translation="GNFHSAATPITTSRPLDAIALLRANSKLLGAADLDAVVKAAREL
                     LGALVPEAQIRRCARGVGTPVTAGAFGQQLQIPLSRREILLVTAPDNHAGIALLRPAA
                     NLIEARIEALGKQTALAESVEHLGRSERLQRALYAIADQASSAGDDLTTMSRALHSIV
                     SSLMYAENFYIALYDAARDSVRFAYYADVADPNIPDPHSDMSMAEILHGPTWYVLHDG
                     KPLMGPPELMSRCVTGPFHMVGAVCKDWLGVPLLRGTDVVGCVVVQSYDDVHHFSEQD
                     KTLLIYVAQHIQTALERRLAHAELEHRVSERTAELQQQVLERQRGERLQAALFRIAEL
                     ASTTDSIETFYATVHSVVGDLLYARNFYIALSSEDGTELTFPYLVDERDDKHEPRKLA
                     NGLTEYVVRHGKALLADSAEVSRLRAAGEVAPYGPDSECWLGVPLVCSERTVGVLVVQ
                     SYSPERRYTPRDQDLLTFVSYHIANALERIRVAESLRHAYADLERRVDERTGALGLAN
                     RDLRAEIAERERVEARLKHETLHDPLTGLPNRTQLTQRLAHALAHYRADPAKGFAVLF
                     MDLDRFKVINDSVGHLLGDDLLFEVGKRVRACLKPNDMVARMGGDEFCVLLDGVADLD
                     TASNIAGRIIHALNAPFWLASKEMFTSTSVGIALAAPHYQSPDELLRDADSAMYRAKA
                     EGRHRCVVFDDELRRETVSLLEVENDLRRGLTRCEFVPYYQPIVNLDAGNVIGYEALM
                     RWRHPRRGIVLPGEFLSVAEDTGMSEAMDWQIFTQACRDANALAGSGDAFVSVNLSAR
                     HFRDPKLDQRLLGLLAEYAVPASRFRVEVTERALLEDTPTVKRVLHIFRQAGIGVSLD
                     DFGTGYSSLSYLHQYPLQTLKIDRSFVADLTKDDQGSGVAVIRAILAMADALSMQVIA
                     EGVETTAQRDLLRELGCQHVQGFLYSKAQPVDTWIGGDAPVFAA"
BASE COUNT          594 a          993 c          967 g          558 t
ORIGIN      
        1 accggcggcg tcaacaagat cttcaagtac gcctacgccg tgcgtcacgt cggcaagaag
       61 ctgaaaaacc gcaaccgcaa gctctactac gctgccaagt ggtcgatttt cgccgtgatc
      121 ctcgcggcca tcttcgtgcc gtggcgaatg ttgtgacgcg cccgcgcggg gaacatccga
      181 acgccgcaat gaggtgcctc caagaggggc caactgtccg aagacaggtt tcgtcatgcc
      241 gcaaaaacgg gtgcgtcgcc tccgatccac gtatccaccg gctgcgcctt cgaatacaga
      301 aatccctgga catgctggca accgagctcg cgcagcaggt cgcgctgcgc ggtggtttca
      361 accccttccg cgatcacctg catcgaaagc gcatcggcca tcgccaggat cgcgcgaata
      421 accgccacgc cgctgccttg atcgtctttg gtgagatcgg cgacgaatga acggtcgatc
      481 ttgagcgttt gcaacgggta ctgatgcagg taggacagcg acgaatatcc ggttccgaaa
      541 tcgtccagtg aaacgcctat gccggcttgg cggaagatat gcagcactcg cttgaccgtg
      601 ggcgtatctt ccaacaacgc gcgctcggta acctcgacgc ggaagcgcga cgccggcacc
      661 gcatattcgg caagcagccc gagcagcctt tgatcgagct tgggatcgcg gaaatggcgt
      721 gccgacagat tgacactcac gaaggcatca ccgcttccgg ccagcgcatt ggcatcgcga
      781 cacgcctggg tgaagatctg ccaatccatg gcttcggaca tcccggtgtc ctcggcgacg
      841 ctgagaaatt cgcccggcag cacgatgccg cgccgcgggt ggcgccaacg catcagcgct
      901 tcatagccga tgacgttgcc cgcgtcgagg ttcacgatcg gctggtaata cggcacgaac
      961 tcgcagcgtg tcaggccacg gcgcaggtcg ttttcgacct ccagcagcga taccgtttcc
     1021 ctgcgcagtt cgtcgtcaaa caccacacaa cggtgacgcc cttcggcctt ggcacggtac
     1081 atggccgagt cggcgtcgcg cagcaactcg tcagggctct ggtagtgcgg cgcagccaat
     1141 gcgatgccga cggaggtgga ggtgaacatt tccttggaag cgagccagaa tggcgcattg
     1201 agcgcatgga tgatgcgccc ggcgatgttg ctggcggtat ccaagtccgc aacaccgtcc
     1261 aacagtacgc agaactcgtc accgcccatg cgcgcaacca tgtcattggg cttcagacag
     1321 gcgcgaacgc gcttgccgac ctcgaacaac aggtcatcgc ccaacaagtg accgaccgag
     1381 tcgttgatca ccttgaagcg atcgagatcc atgaacagca ccgcgaaccc cttggccggg
     1441 tccgcgcgat agtgtgcgag cgcgtgcgcc agccgctgcg tcagttgagt gcgattgggc
     1501 aggcccgtca gcgggtcgtg caaggtctcg tgcttcaggc gcgcctcgac gcgttcacgc
     1561 tcggcaatct ccgcgcgcag gtcacgattg gccaatccca gtgcaccggt gcgttcgtcc
     1621 acacggcgct caagatcggc gtaggcgtgg cgcagggatt cggcgacgcg tatccgctcc
     1681 agcgcgttgg cgatatggta ggacacaaag gtcagcaggt cctggtcgcg cggcgtatag
     1741 cgccgttccg gcgaatagct ctgcacgacc aacaccccga ccgtgcgctc cgaacacacc
     1801 agcggcacgc caagccagca ctccgaatcc ggtccgtatg gtgccacttc gcctgcggcg
     1861 cgcagcctgg aaacttccgc cgaatccgcg agcaatgcct tgccgtgtcg caccacgtat
     1921 tccgtcaggc cgttggcgag tttgcgcggc tcatgcttgt cgtcgcgttc atccaccagg
     1981 tacggaaagg tcagttcggt accatcctcg gatgacagcg caatatagaa attgcgtgcg
     2041 tacagcaggt cacctaccac gctgtgcacg gtggcataga aggtttcgat gctgtcggtg
     2101 gtactggcga gttcggcgat gcggaacagc gccgcctgca accgctcacc gcgctgacgc
     2161 tccaggacct gctgctgcag ttcagcggtg cgctcgctga cgcggtgttc cagctcggcg
     2221 tgcgccaggc gccgctccag cgcagtctgg atgtgctggg ccacatagat caggagcgtc
     2281 ttgtcctgct cggagaagtg gtgcacatcg tcgtaactct ggaccaccac gcaaccgacc
     2341 acgtcggtgc cccgaagcaa cggcaccccc agccagtcct tgcacacggc gccgaccatg
     2401 tggaacggcc ccgtgacgca gcggctcatc aattccggtg gacccatcaa cggcttgccg
     2461 tcgtggagca cgtaccaggt cgggccgtgc aggatttccg ccatcgacat gtcgctgtgc
     2521 gggtcaggga tgttcggatc ggcaacatcg gcgtagtacg caaagcgcac gctgtcgcgt
     2581 gcagcgtcat acagggcgat gtaaaagttc tctgcgtaca tcagggaact gacgatgctg
     2641 tgaagcgccc gggacatcgt ggtcaggtcg tcgcctgccg aactggcctg gtcagcgatg
     2701 gcatacagcg cgcgctgcaa gcgttcggac cggccgagat gctcgacgga ttccgccagc
     2761 gccgtctgct tgccgagcgc ctcgatccgg gcttcgatca aattggctgc cggcctcagc
     2821 aacgcgatcc cggcatggtt gtccggcgcg gtaacaagga gaatctcccg cctggaaagc
     2881 gggatctgca attgttgccc gaaggcccct gcggtgaccg gtgtcccgac gcccctggcg
     2941 cagcgccgga tctgggcttc cggcaccagg gcgcccagga gctcgcgggc agctttcacc
     3001 acggcatcaa ggtcggcggc ccccaacagt ttgctgttgg ctcgcaacaa ggcaatcgcg
     3061 tcgagtggcc ggctggtggt gatgggtgtc gctgctgaat ggaagttgcc gg
//
LOCUS       DATIMD010000638         3539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2591127, whole genome shotgun sequence.
ACCESSION   DATIMD010000638 DATIMD010000000
VERSION     DATIMD010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3539
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2591127"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..620)
                     /locus_tag="VLI40_14230"
     CDS             complement(<1..620)
                     /locus_tag="VLI40_14230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase III"
                     /protein_id="HSU98389.1"
                     /translation="MPLRTSEYFGVNTFGARQMREKLPKEIYVKLLSAVRQGKKLDRD
                     IAPTVAQVIKDWAVSRGVTHFTHWFQPQTGLTAEKHDAFLTFDDELEPMEAFSAAQLI
                     QSEPDASSFPSGGLRATWEARGYTAWNPASPVFIVESAGARTLCVPSVFIGYNGEALD
                     EMTPLLRSSDVLSQKATELLELMGDRSVRRVYTTLGAEQEYFLVDRT"
     gene            800..2122
                     /gene="glnA"
                     /locus_tag="VLI40_14235"
     CDS             800..2122
                     /gene="glnA"
                     /locus_tag="VLI40_14235"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HSU98390.1"
                     /translation="MQKQEILDITKKQGVRFLRLQFTDILGINKNVEIPASQIEKALD
                     GDMMFDGSSIEGFVRVEESDMLLVPDLSTFQVYPWGDPDARVARLICDVHTPDGDHFE
                     GDPRWVLKRAVAKAEAMGFRMNAGMEAEFFMFRPGAGGSVSTTTHDVGSYFDLAPSDL
                     GEEARRAIVVALEKMGFEVEAAHHEVAHGQHEIDFRYADALRTADNIATFRFVVKYVA
                     QQFGLVASFMPKPIFGQSGSGMHTHQSLFRGSENAFYDAAGQYELSETALHYIGGLLK
                     HARACTAITNPLVNSYKRLLTGYEAPANVAWSMRNRSPMLRIPARRKIGTRVEHRAPD
                     PSANPYLALAVMLAAGLDGIETRADYREPVNENIWEMSHRERRRLRIDDLPHDINEAC
                     DELEKDDVIRDALGPHVTRHFLAAKREEWREYMMQVSKWELDNYLAKY"
     gene            complement(2130..2288)
                     /locus_tag="VLI40_14240"
     CDS             complement(2130..2288)
                     /locus_tag="VLI40_14240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98391.1"
                     /translation="MAKILGMTGSFVCSSIGWWLGAFVGTMTACMLSIVGVGVGIYLG
                     RRIAADYF"
     gene            2523..3143
                     /locus_tag="VLI40_14245"
     CDS             2523..3143
                     /locus_tag="VLI40_14245"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSU98392.1"
                     /translation="MNPSRQDPAYTTRPTVATPGATSGDDLSVVRRIAAGDESALAAL
                     YDSWAQPVYSMVAHLLKDADGTEDVVEETFWQVWQRAASYDASRGTVRTWILTIARSR
                     ALDRLRSRKRNREDITADMSILRDPAPDPSENAESDERRHLVQRALQELPEDQRRALD
                     LAYFRGFSQSEIAEMLGEPLGTIKTRMRLGMQKLRNNLMGLRESRL"
     gene            3140..>3539
                     /locus_tag="VLI40_14250"
     CDS             3140..>3539
                     /locus_tag="VLI40_14250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98393.1"
                     /translation="MSNDNERNEEDARDHRASEDGAPDWQNTGQPIAPTPVNEPESAF
                     DVAGAALGALAPGEEADVYTAASVDPAVSAELAAMEAVVAELARLAPVQQMNRGRSAG
                     IRSRLVARAAATNVGRQASPTGAAAESEHAA"
BASE COUNT          705 a         1113 c         1073 g          648 t
ORIGIN      
        1 gtgcggtcaa ccaggaaata ttcctgctcc gcgccgagtg tcgtgtagac tcgccgtaca
       61 ctccggtcgc ccatcaactc gagcagctcg gttgccttct gcgagagcac atcggaactc
      121 cgcagcagag gcgtcatctc atccagcgcc tcgccattgt agccgatgaa tactgaagga
      181 acgcacagcg tgcgcgcccc tgcactctcc acgatgaata ccgggctcgc cggattccag
      241 gccgtgtaac ctctcgcctc ccatgtcgcg cgcaggccgc cagacggaaa gctcgatgcg
      301 tccggctcgc tctgaatcag ctgcgccgcc gaaaacgcct ccatcggctc cagctcgtcg
      361 tcaaaggtga ggaacgcgtc gtgcttctct gccgtcagtc cggtctgcgg ctggaaccag
      421 tgggtgaagt gagtcacccc gcgcgatacc gcccaatcct tgatcacctg cgccaccgtc
      481 ggcgcgatgt cccggtcgag tttcttcccc tggcgaaccg ccgacaggag cttgacgtag
      541 atctccttgg ggagcttctc gcgcatctgg cgcgcgccaa aggtgttgac accgaagtac
      601 tcggatgtgc gaagaggcac cggcgtggag gattcgtcgg ttacgcgggc tgagatgtcc
      661 tggactgcta gctggcgggc ggttggcatt tttggggcgg cttcgaggcc tggtgttatg
      721 ggaaaattgt aaaacttgca cgaacagggt agcaatctgc atatttaggt cggcaatcgc
      781 aagcaaaccc gactaaaaaa tgcaaaaaca ggaaattctg gacatcacaa agaaacaagg
      841 agtccggttc ctcaggctcc agttcaccga tatcctgggc atcaacaaga acgtcgagat
      901 ccccgcctcc cagatcgaga aggctctgga cggcgacatg atgttcgacg gctcttccat
      961 agaagggttc gtccgtgttg aggagtctga catgctcctc gtcccggacc tgtccacctt
     1021 ccaggtctat ccctggggtg accccgatgc ccgagtcgct cggctcatct gcgacgtgca
     1081 cactcccgat ggtgaccact tcgagggtga tccgcgctgg gtcctcaagc gtgcggtcgc
     1141 gaaggcggag gccatgggct tccggatgaa tgccggcatg gaggccgagt tcttcatgtt
     1201 ccggcccggc gccggcggta gtgtgtccac caccactcac gacgtcggta gctatttcga
     1261 cctcgcccca tccgatcttg gcgaggaagc gcgtcgagcg attgtggttg cgctggagaa
     1321 gatgggattc gaggtcgagg ccgcgcatca tgaggtcgcg catggccagc acgagatcga
     1381 ttttcgctat gccgatgctc tgcgcaccgc cgacaacatc gcgacgttcc gattcgttgt
     1441 aaaatatgtc gctcagcagt ttgggctcgt cgcgtcgttc atgcccaagc cgatcttcgg
     1501 tcagagcggc agcggcatgc acacgcacca gtcgctattt cgcggcagcg agaacgcgtt
     1561 ctatgatgcg gccggtcagt atgagctcag cgagaccgcg cttcattata tcggaggtct
     1621 gctcaagcat gcgcgcgcgt gtaccgcgat caccaatccg ctcgtcaatt cgtacaagcg
     1681 gcttctcacc gggtacgaag cgccggcgaa tgtagcgtgg tcgatgcgca accggtcgcc
     1741 gatgctgcgc atacctgcac gtcgcaagat cggcacgcgt gtggagcatc gcgcgcctga
     1801 cccgtcagcc aatccgtacc tggcgctggc cgtgatgctc gctgcagggc tggacgggat
     1861 cgagacacgt gccgattatc gcgagcctgt caacgagaac atctgggaga tgtcacatcg
     1921 tgagcgccgc cgcctgcgca tcgacgatct gcctcacgat atcaacgaag cctgcgacga
     1981 attggagaag gacgacgtca tccgtgacgc actcggtccg cacgtcactc ggcatttcct
     2041 cgccgccaag cgtgaggaat ggcgcgagta catgatgcag gtgagcaagt gggagctgga
     2101 caactacctc gcgaaatact gatcgaaggc tagaagtaat cggccgcgat ccggcgcccc
     2161 agatatatcc cgacgccaac gccgacgatc gacagcatgc acgctgtcat cgttccaacg
     2221 aacgctccca gccaccatcc tatcgagctg caaacgaacg aaccggtcat accaaggatc
     2281 ttcgccatgc cacctcttct ccattttgag cggcgatcgg ccccgtcgta aatagcggca
     2341 tcaggcagcc aggtacgcgg ccaggtacgc agccaggtac gcggcccgct cagcgtcttc
     2401 ctttataggg acgcgaagcg attccctttg taacgcgccc cgtagtaacg cgctcaacct
     2461 tcggcggtca cgcgcggccg ttgcatggcc cacccggggg cgccggggta gattccctcg
     2521 caatgaatcc gtcgcggcag gatccggcgt acaccacacg accaaccgtt gctacgcccg
     2581 gtgccacgtc cggtgacgat ttatctgtcg tcaggcggat cgccgcgggc gatgagtcag
     2641 ctctggcggc gctgtacgac agctgggcgc aaccggtgta ctccatggtc gctcacctcc
     2701 tcaaggatgc cgatggcacg gaggacgtcg tggaggaaac cttctggcag gtatggcaac
     2761 gcgctgcgtc ctacgatgcg tcgcgtggca ctgtgcgaac gtggattctg acgatcgctc
     2821 gcagccgcgc gctcgatcga ctccgcagcc gcaagcgcaa ccgcgaagac attaccgccg
     2881 acatgagcat tctgcgtgac ccggctcccg atccctccga gaatgccgaa agcgatgagc
     2941 gcagacatct ggtacaacga gcgctgcagg agcttccgga agatcagcgt cgtgcacttg
     3001 atctggcata cttccgcggc ttcagccaat ccgaaatcgc tgaaatgctc ggcgagccgc
     3061 tcggcaccat caagacgaga atgcggctcg gcatgcagaa actgcggaat aatttgatgg
     3121 ggctgcgaga gagcagacta tgagcaacga caacgagcgg aacgaagaag acgcgcgtga
     3181 tcaccgcgca agcgaggacg gcgcgcccga ctggcagaat acagggcaac ccatcgctcc
     3241 gactccggtg aacgagccgg agtctgcctt cgacgtcgcc ggcgcggcac ttggtgcgct
     3301 cgcgcctggc gaggaggcgg acgtgtatac cgcggcttcc gtagatcccg ccgtctccgc
     3361 tgagcttgcc gccatggaag ccgtggtcgc cgagctcgct cgcctcgcac cagtgcagca
     3421 gatgaatcgc ggtcgctcgg cgggaattcg ttccaggctc gtcgctcgcg cggccgcgac
     3481 caacgtcggt cgccaggcat cgccgacagg cgccgcagca gagagtgagc acgcggccg
//
LOCUS       DATIMD010000639         3691 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1728963, whole genome shotgun sequence.
ACCESSION   DATIMD010000639 DATIMD010000000
VERSION     DATIMD010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3691
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1728963"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(203..739)
                     /gene="msrA"
                     /locus_tag="VLI40_14255"
     CDS             complement(203..739)
                     /gene="msrA"
                     /locus_tag="VLI40_14255"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HSU98394.1"
                     /translation="MNEQQHTTHTTTAATPHTEVAVLAGGCFWGVEDILREVPGVIDT
                     DVGYTGGWVKNPTYEDTHDSKSGHAEAIRITFDPSVLSYQDLLENWFFRLHDPTTLNR
                     QGNDIGTQYRSAIFPQSPEQAKIAEQVIARVQASGKWKKPITTTIEPASTWYSAEKYH
                     QDYLKKNPGGYSCHYLRD"
     gene            complement(889..2499)
                     /locus_tag="VLI40_14260"
     CDS             complement(889..2499)
                     /locus_tag="VLI40_14260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HSU98395.1"
                     /translation="MPCTRNIRNPFSAAATARVLALVATLLNATPVSAQQRAQASAAP
                     FHVEEATIAQIHAALKDGSLTCVGLVQQYLRRIDAYDKKGPAVNAIVMVNPDALATAA
                     DLDRRFARDGITGPLQCIPVIVKDNYQTAGLRTTAGSLSLKGFIPREDAFVVRKLREA
                     GAIVLAKSNMAEFAFSPYETVSSILPGYTRNPYDLARVTAGSSGGTAAAVSSDFGAVG
                     LGTDTGNSIRGPSAFLSLVGIRPTMGLTSRSGVVPLFLSADVTGPMARSVADAVALLQ
                     VIAGPDTADTVTAHSAGKIPRSYAASLVRDGLKGARIGVLHQAYDRPSADSEVMKLFG
                     GALDDMRAHGATIVDPVAVDSLTALFRIANAPCNPFKYDLNRYLSALGNQVPVHSLDE
                     IIKSRQFHPSIELRLKDAQAVTEPPEQSAGCREQQEFRARLRQAVLHLMDTNKLDALV
                     YPTWSNVPRLIGDLNTPAGDNNQLFAPSTGFPAITVPMGFTRDGTLPAGVQFFGRAWS
                     EPELIKLAYSYEQATMHRHPPPSTPAIR"
     gene            complement(2538..>3691)
                     /locus_tag="VLI40_14265"
     CDS             complement(2538..>3691)
                     /locus_tag="VLI40_14265"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSU98396.1"
                     /translation="GIFFVGYAICEVPSNIILARVGASRWMARIMISWGLIASAMMFV
                     RTPLHFYVLRFLLGVAEAGFFPGIIYYLSQWFPVTARGRATSWFTIAVPLSAVIGGPL
                     GGALLGLDGVLQIAGWQWLFVAEGIPAVILGIVVLVALPDQPSKARWLSDEQRTWLTD
                     RLQHDQRESAAPEGLPTLRALMQRPLWLLILAYFLFFGFGFVYFFWGPTIIHETLGGS
                     ALETGFVVGIIALLSAASQLIVGASSDRTGERALHVAACGVIIAVGYAGAALFPTPIA
                     RIGGLALVSIGATAFLAPLWCIPSMLLRGTAAAAGIGLVSAIGSLGGFVGPYATGWLR
                     DRSGGTNGAFLTLACLALVAAVLMVVISMALRRAGRLAFVEASLDPVNT"
BASE COUNT          710 a         1099 c         1176 g          706 t
ORIGIN      
        1 ggagcagagc gaggagtttt tcaccgcgct caaccggatg ggcaagccgg tgcggtacgt
       61 gcgctatgcc ggcgaggagc acggcaacgc atcagcggcg aacctgatcg atctcgtcac
      121 acagatgacc aactggttcg atgcgtggtt cggatcgagc gtgaagtaag cggaacggtt
      181 gccgcgaacg accaatcggt cgctagtcgc gcagatagtg acagctgtag ccaccgggat
      241 tctttttcag gtaatcctgg tggtacttct ccgcactgta ccatgtcgaa gcgggctcga
      301 tcgtcgtcgt aattggcttc ttccacttgc ccgaagcctg cacgcgcgca atcacctgct
      361 cggcgatctt cgcctgttcc ggtgactgcg gaaagatcgc ggagcgatat tgcgtgccga
      421 tgtcgttgcc ctgccgattc aacgttgtcg gatcgtgcag gcgaaagaac cagttctcga
      481 gcaggtcttg atagctgagc accgacggat cgaaggtgat gcgaatcgct tccgcgtgcc
      541 ccgacttgct gtcgtgcgtg tcctcgtacg tgggattttt cacccagccg ccggtgtagc
      601 ccacatcagt gtcgatgacg ccggggactt cgcgaaggat gtcttccacg ccccagaagc
      661 agccgcccgc gaggacggcg acttcagtgt gtggggtggc tgctgtggtc gtgtgtgttg
      721 tgtgctgttg ttcgttcatt tccgacctcc tgctcgagca ttggtgcgtt caatgattcg
      781 tcaatgaaag ttaaatgtgc gaccgggtga atgtcatcga catcacggtc atcggcgcga
      841 ggtctgaccg tggtcccccg cacgccaagc cctcacatga gatcgggctc accgtattgc
      901 cggcgtgctc ggcggtggat gcctgtgcat cgttgcctgc tcgtatgagt aggccagctt
      961 gatcaactcc ggctcgctcc acgctcggcc gaagaactgc acgcctgccg gcagagttcc
     1021 atcacgcgtg aagcccattg gtacggtgat ggcggggaag ccggtgctcg gtgcgaacag
     1081 ctgattgttg tcgccggcgg gagtgttcag gtcgccgatc aggcgcggca cgttgctcca
     1141 ggttggatat accagtgcgt ccagcttgtt ggtgtccatg agatggagca ccgcctggcg
     1201 caatcgggca cgaaattcct gctgctcgcg acagccggcg gattgctccg gcggctcggt
     1261 caccgcctgc gcgtccttca gtcgcagctc gatggaggga tggaactgac gtgatttgat
     1321 gatctcgtcc agactgtgga ccggtacctg attgccgagt gcgctcagat accggttgag
     1381 atcgtacttg aatggattgc acggtgcatt cgcgatgcgg aagagcgcgg tgagactgtc
     1441 caccgccact ggatccacga tcgttgctcc gtgcgcacgc atgtcatcca gcgcgccacc
     1501 gaacagcttc atcacttccg aatccgcgct cggtctgtca tacgcctggt gcagcacgcc
     1561 gatgcgcgca cccttgagtc cgtcacgtac gagtgacgcg gcgtagctgc gcggaatctt
     1621 tccggcgcta tgcgcggtga ccgtgtcggc ggtatcggga ccggcaatca cctggagcaa
     1681 agccaccgca tcggccacgc tccgcgccat cggtcccgtg acatccgccg agagaaagag
     1741 cggcacgacg ccgctccggc tcgtgagtcc cattgtggga cggattccga cgagactcag
     1801 gaatgccgac ggaccgcgga tcgagttgcc ggtgtcggtg ccgagcccca cggcgccgaa
     1861 gtcggaagat accgcggccg cggtgccacc gctcgatcca gctgtgacgc gagcgagatc
     1921 gtacgggttg cgtgtgtagc ccggcaggat cgagctcacc gtctcatacg gactgaacgc
     1981 gaactcggcc atgttggatt tcgcgagcac gatcgcgccc gcctcgcgca acttgcgaac
     2041 cacgaacgcg tcctcgcgag gtatgaatcc cttgagggag agagagccgg cggtggtgcg
     2101 aagtcccgcg gtttgataat tgtccttcac tatcaccgga atgcactgca gcggtccggt
     2161 tatcccgtcg cgtgcgaagc ggcgatccag atcggcggca gtcgcgagag cgtcggggtt
     2221 gaccatcact attgcattga ctgcgggccc ctttttatcg tacgcgtcga tgcgccgcag
     2281 atattgctgc acgaggccga cgcacgtgag cgagccgtct ttcagcgcag cgtggatctg
     2341 cgcgatggtc gcttcctcga cgtggaaggg tgcagcggaa gcctgcgctc gctgctgcgc
     2401 gctgactgga gttgcgttga gaagcgttgc gaccagcgcc agaacgcgag cggttgccgc
     2461 ggcgctgaac gggttgcgga tgttgcgtgt gcagggcatg tcgttcactc tagccaaggt
     2521 cgacgccggc gaacagatca tgtgttgacc ggatccagtg atgcttccac gaacgccaaa
     2581 cgccccgctc ggcgaagtgc cattgaaatg acgaccatca atacggccgc aaccagcgca
     2641 aggcatgcga gtgtcagaaa tgcgccgttc gttcctccgg atctgtcgcg cagccagccc
     2701 gttgcatagg gaccgacgaa tccgccgagg cttccgatcg cgctcacaag tccgatgccg
     2761 gccgctgcag ctgttccacg cagcagcatc gagggaatgc accatagtgg cgcgagaaac
     2821 gcagtcgcgc cgatagacac cagtgcgagt ccgccgatgc gggcgatcgg ggtcgggaag
     2881 agcgcggctc ccgcgtatcc gaccgcgatg atgacaccgc acgcagccac gtgaagcgct
     2941 cgttctccgg tgcgatccga gctcgctccg acgatgagct gcgacgctgc cgagagaagt
     3001 gcgatgattc ccacgacaaa cccggtttcg agcgcgctgc cgccgagcgt ttcgtggatg
     3061 atggtcggtc cccagaagaa gtacacgaat ccgaaaccga agaaaaggaa gtacgcgagg
     3121 atgagcagcc atagtggccg ctgcatgagc gcgcgaagcg tcggcagccc ttccggtgcg
     3181 gcagactcgc gttgatcgtg ctgaagtcga tcagtcagcc acgtgcgctg ctcgtcggac
     3241 agccagcgag cctttgacgg ttgatccggt agcgcgacga gcacaacgat tccgagaatg
     3301 accgcgggaa tgccttcggc aacgaacagc cattgccatc ctgcaatttg gagtactcca
     3361 tccagaccca ggagtgcgcc gccgagcgga ccacctatta ccgccgatag tggaaccgcg
     3421 attgtgaacc acgacgtggc gcgcccacgc gcggttacgg gaaaccactg gctcagatag
     3481 tagatgattc ccgggaagaa gcccgcttcg gcgacgccga gcagaaatcg cagaacgtag
     3541 aagtggagcg gcgtgcgaac gaacatcatt gcggaagcaa tgagtcccca gctgatcatg
     3601 atccgcgcca tccatctgct tgcacccacg cgtgcgagga tgatgttgct gggaacttcg
     3661 cagattgcgt aaccgacaaa gaagattccc g
//
LOCUS       DATIMD010000640         3542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1438539, whole genome shotgun sequence.
ACCESSION   DATIMD010000640 DATIMD010000000
VERSION     DATIMD010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3542
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1438539"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(259..1503)
                     /locus_tag="VLI40_14270"
     CDS             complement(259..1503)
                     /locus_tag="VLI40_14270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HSU98397.1"
                     /translation="MDRRVFVKSGALALVTMGLSPSFLRRMAYGMELKNVPKGKTLVC
                     LFQRGAADGLNVVVPHGESAYYDMRPTIAVARPGQASGAIDLDGFFGLHPSLAPLKPL
                     WDQKLLAPIHAVGSPSTSRSHFDAQDFMETGTPDVKGTPDGWLNRLLAVEGTCQQCQA
                     APFRAIAMTPQTPRILEGPTETIAMNSLGEFSVRATGSEAERLEALYRTGSADLVHGA
                     GQEMFDAVKLLKSANPQQYAPRNNAAYPKTQFGQRLMQIAQLIKSNVGLEVAFADVGG
                     WDTHVNQGNGTGQLAGRLDDFAKSLAAFTQDLGDQMNDVLVLTMSEFGRTARENGNRG
                     TDHGHATAFFALGGGVKGGKVYGKWPGLAPEQLNEGRDLKLTTDFRTVFSEVAVKHLG
                     ASRVEKIFPGYTGGPQEWLGLV"
     gene            complement(1546..>3542)
                     /locus_tag="VLI40_14275"
     CDS             complement(1546..>3542)
                     /locus_tag="VLI40_14275"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1800 domain-containing protein"
                     /protein_id="HSU98398.1"
                     /translation="LTESAAGRQRGVTTISSLWRSAAARRMIAVAAVVPSLAFAQRPG
                     TSAPRGAKQAPGSATSSIREQTADQQVMQVLNRLAFGPRPGDAAMVRSIGVDAWIDQQ
                     LHPERINDDAMDQLLARYPLLQQDQAALAMQYATAQRQFRLVKRDTANRSVAQDTDMS
                     ALKEMRRSHAQLVGEIESARVARAVGSNRQLLEVMTDFWENHFNVFVGKNPIEPYYLT
                     DYDRTIREHALGKFRDLLGAVAHSPAMLVYLDNAQSRANPGQPTLDAEHRAPGGMVRV
                     GNGGLDVEAIIRRRNLDARQAQQLRQRAASAKKAGLNENYGRELMELHTLGVDGGYTQ
                     QDVIEAARALTGWSIRPPAQGGGFVFRPEWHDAGEKLFLGHKLAAGRGEQDGEDVLDI
                     LARSPATAHFISQQLARRLVSDSPSTALVDRAAQTYLRTDGDIREVVRSIVTSPEFFS
                     ARAYHSKVKSPFEVVVSAARALGAAPDSTARTALAVAYLGEPVFGHRDPNGWPETGDA
                     WMNTGAILNRINFGLAVAANRLPGANMHALPAIDSLFNAPRAAQVDAVVSNLLEGAAS
                     PDTRRILMSGEHPFAANAASAAQRAADTPAGGDGTPAGTMEDASASNALQPMGAATLQ
                     GIPGLGRALARNPIVGPTPQLTGLAQMVGFALGSPEFQRR"
BASE COUNT          621 a         1196 c         1009 g          716 t
ORIGIN      
        1 atctttctgt aaatgagccc atcgcgacgt agcgcagcat cgcactccgc gacggccggg
       61 ccctcgcgaa catccgccgt tacattagcg ccaatcctcg taactggatc gagccccgcc
      121 gttatccgtg agtcgcagca gtgcctgcac acgcaggcgc agccatgcca accgttacca
      181 cagcaaactc ccatacaaac gaaaacgtcc ggctggtctt cccagccgga cgcgtctttt
      241 ctcgtctcat ctctccgctc acacgagccc aagccactcc tgtggcccgc ccgtgtatcc
      301 gggaaatatc ttctccactc gcgatgctcc aagatgcttc acggctacct cgctgaacac
      361 cgtgcgaaag tcagtcgtca gcttgagatc gcgaccttca ttcagttgct ccggcgcgag
      421 tccaggccac ttgccataaa ccttgccacc tttcacgccg ccgccaagtg cgaagaacgc
      481 cgtcgcgtgg ccatgatcgg tgccgcgatt tccgttctct cgcgccgtac gtccgaactc
      541 cgacatcgtc aggacgagca cgtcgttcat ctggtcgccc aggtcctgcg tgaacgccgc
      601 gagtgacttc gcaaaatcat ccagtcgccc cgcaagctgc ccggtgccgt tcccctgatt
      661 cacgtgcgtg tcccatccgc caacgtcggc gaaggcaacc tccaaaccta cattcgactt
      721 gatgagttgc gcaatctgca tgagccgctg accgaactgg gttttcggat aggcagcatt
      781 gttgcgcggt gcgtactgct ggggattggc gctcttgaga agctttaccg catcgaacat
      841 ttcctggccg gctccgtgca cgagatccgc gctcccggtg cgatacagcg cctcgagtcg
      901 ctcggcctcg ctcccggtgg cacgaaccga aaattcaccc agcgagttca tcgctatcgt
      961 ttccgtggga ccctcgagta tgcgcggggt ctgcggcgtc attgcgattg cgcggaacgg
     1021 cgctgcctga cactgctggc atgtgccttc aaccgctagg agacgattca accatccgtc
     1081 cggcgttccc ttcacgtccg gcgttccggt ctccatgaag tcctgcgcgt cgaagtgcga
     1141 gcgcgacgta ctcgggcttc ctacggcgtg aatcggcgcc agtaacttct ggtcccagag
     1201 cggcttcaac ggcgcaagtg atggatgcag tccgaagaat ccatccagat cgatcgcgcc
     1261 cgacgcctgc ccgggacgtg caactgcaat ggttggtcgc atgtcatagt acgcgctctc
     1321 tccatgcgga accaccacgt tcaatccatc cgccgcaccg cgctgaaaga ggcacacgag
     1381 cgtctttccc ttgggaacgt tcttcagctc catgccatac gccattctgc gcaggaagct
     1441 cgggctcagt cccatggtga caagcgcgag cgcacccgac ttcacgaata ctcttcggtc
     1501 catgttggtt cgtcctccag ttgcgacgcg caatgcgctc gcgcgttatc tgcgttgaaa
     1561 ctcgggcgat ccgagtgcaa atccgaccat ctgcgccagg ccagtcagct gcggtgtcgg
     1621 tccaacgatc ggattgcgtg cgagcgcgcg tccgaggcct ggtataccct gcagcgtcgc
     1681 cgcgcccatc ggctgcagcg cgttcgacgc cgatgcatcc tccatcgtac cggctggcgt
     1741 tccatcaccg ccggccggag tatcagccgc gcgttgagca gcgctggcgg cgttcgccgc
     1801 aaacggatgc tcgccgctca tcaggatcct gcgtgtatcc ggcgacgccg cgccttccag
     1861 gaggttcgac accaccgcat cgacctgtgc ggcgcgcggc gcgttgaaca gcgaatcgat
     1921 cgctggcaac gcgtgcatgt tcgcaccggg caatctgttc gccgcaactg caaggccgaa
     1981 gttgatacga ttcaggatcg caccggtatt catccatgcg tcgcccgtct ctggccagcc
     2041 gttcggatcg cgatgtccaa acacaggctc gcccagatag gccaccgcca gtgcggtgcg
     2101 cgcagtcgaa tcgggtgctg ctcccagcgc gcgcgcagcg cttacgacga cctcgaatgg
     2161 cgatttcact ttcgaatgat atgcccgggc cgagaagaac tccggcgacg tgacgatact
     2221 tctcacgacc tcacgtatgt caccgtcggt cctgagatat gtctgcgccg ccctgtcgac
     2281 aagtgcagtc gacggcgaat cacttacgag tctgcgcgca agctgctgcg agatgaaatg
     2341 cgcggtcgcc ggactgcgcg cgaggatatc gagcacgtcc tcaccgtcct gctcgccgcg
     2401 acctgccgca agcttgtggc cgagaaacaa tttctcgccg gcatcatgcc actccggccg
     2461 gaagacgaag ccaccgccct gtgccggcgg ccgaatgctc cacccggtaa gtgcgcgcgc
     2521 cgcttcgatc acgtcctgct gtgtatatcc accgtcgaca ccgagcgtgt gcagctccat
     2581 cagctcgcgt ccgtagttct cgttgaggcc ggctttcttc gcggaagcgg cgcgttgcct
     2641 gagttgctgc gcctgccgcg cgtcgaggtt tctgcgtcgg attatcgctt cgacgtcgag
     2701 tcctccattc cccacgcgca ccatgccacc cggcgccctg tgttccgcgt cgagcgtcgg
     2761 ttgtcctgga ttcgctcggc tctgcgcatt gtcgaggtaa accagcatcg caggcgagtg
     2821 cgcaaccgca cccagcagat cgcggaattt gccgagcgcg tgctctcgta tggtccgatc
     2881 gtagtctgtg agatagtacg gctcgatggg attcttcccg acgaacacgt tgaagtgatt
     2941 ctcccagaaa tcagtcatca cttcgagtag ttgccggttg ctcccgaccg cgcgggcaac
     3001 gcgcgccgat tcgatctcgc cgaccagttg cgcgtgcgac cggcgcatct ccttcaacgc
     3061 gctcatgtcc gtatcctgcg ctacgctgcg gttggcggtg tcgcgcttga caagacgaaa
     3121 ttgcctctgt gccgtcgcat attgcatcgc gagcgccgcc tggtcctgct gcagcaaagg
     3181 ataccgtgcg agcagctggt ccatcgcatc gtcattgatg cgctcaggat gcagctgctg
     3241 gtctatccac gcatcgacgc cgatcgaccg caccattgcg gcatcgcccg gccgcggccc
     3301 gaatgcgagt cggttgagca cctgcatcac ctgttgatct gcagtctgct cgcgaatgct
     3361 ggacgttgcg gacccgggcg cttgctttgc tccgcgagga gcgctcgtac ccggccgctg
     3421 tgcgaacgca agcgacggca cgaccgctgc gactgcgatc atgcgtcgcg ctgccgctga
     3481 tcgccagagt gatgagatag tggtcacacc cctttgacga ccggccgcag actccgttaa
     3541 ag
//
LOCUS       DATIMD010000641         2091 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2300414, whole genome shotgun sequence.
ACCESSION   DATIMD010000641 DATIMD010000000
VERSION     DATIMD010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2300414"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..214)
                     /locus_tag="VLI40_14280"
     CDS             complement(<1..214)
                     /locus_tag="VLI40_14280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2723 domain-containing protein"
                     /protein_id="HSU98399.1"
                     /translation="MTSTRAAILRVRPDVRPDVAAAASLFLVYCVTLARGVTYWDAGE
                     FLAAIHSLGIPHPPGTPLFVLMAHVWS"
     gene            complement(211..810)
                     /locus_tag="VLI40_14285"
     CDS             complement(211..810)
                     /locus_tag="VLI40_14285"
                     /inference="COORDINATES: protein motif:HMM:NF014510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA integrity scanning protein DisA
                     nucleotide-binding domain protein"
                     /protein_id="HSU98400.1"
                     /translation="MTWIELAVIAALILFQPEVRSIFYRMRYPRTARFLRRVPRIEVA
                     EEVVDAVDRLSRSSHGAIIVLEQDMTLTEYADTGTELQANASSDLIVTIFTPYTPLHD
                     GAVIIRGNVIVGAGCILPLSQSALPDRMMGTRHRAALGLSEETDSLVVVVSEENASIS
                     VAYKGTMYHSLTTLELREILGGQMPRLTNDHVTAGEMRA"
     gene            complement(807..1622)
                     /gene="folP"
                     /locus_tag="VLI40_14290"
     CDS             complement(807..1622)
                     /gene="folP"
                     /locus_tag="VLI40_14290"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR01496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HSU98401.1"
                     /translation="MRKPTIVGILNITPDSFSDGGNFLPFDEAIDHAERMINDGADVI
                     EVGGESTRPGATPVAIDDEMARVLPVIGEIAQRWPSVSIAVDTVKSEVASAAIAAGAT
                     VVNDVSALRIDPRIADVCSATGCTLILMHSRGDVGNMASYQNAGYEDVMGEIIHELAP
                     AAATAVARGIARDRIVLDPGLGFSKRPEHSVQALAHLARLADLGFQVMVGASRKRFIG
                     ELTGVTKPAERDAGTIGANVVALTLGATWFRVHDVLNNRHALDAAAAILGARA"
     gene            complement(1615..>2091)
                     /locus_tag="VLI40_14295"
     CDS             complement(1615..>2091)
                     /locus_tag="VLI40_14295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsH"
                     /protein_id="HSU98402.1"
                     /translation="FGKEHVTTGAASDIQQATNIARRYVSQWGLSDVVGPILVGDDEQ
                     ELFLGREIQSRRHISSQTAQTVDAEISKVIREAYQRATDVLTENLDLLHSVAAALLER
                     ETLSGDEVKMLARGETLPPRAPSSLPPAPPVPVTTALPNPKPVRPPLFGGPEIAPA"
BASE COUNT          382 a          670 c          648 g          391 t
ORIGIN      
        1 tgctccacac atgcgccatc agtacgaaga gcggcgtgcc aggaggatgc ggaattccga
       61 gtgaatggat cgccgccaga aattcaccgg cgtcccagta ggtcacccct ctagcaaggg
      121 ttacgcaata aaccaggaac agtgacgctg ccgcggcgac gtcgggcctg acgtcgggcc
      181 tgacgcgcag gatcgcggcg cgggtgcttg tcacgcgcgc atttcgcccg ctgttacgtg
      241 atcgttcgtg aggcgtggca tctggccgcc caggatctcg cgtaattcga gtgtcgtgag
      301 cgaatgatac atcgtgccct tgtaagcgac ggagatcgag gcgttctcct cactcaccac
      361 gacaaccagt gaatcggttt cctcgctcag tccaagcgcg gcacgatggc gcgttcccat
      421 catgcgatcg ggcaatgctg actgcgacag cggaagtatg catccggcgc cgacgatgac
      481 gttgccgcgg attatcacag caccgtcgtg caacggcgtg tacggcgtaa aaatcgtgac
      541 gatgagatct gacgatgcgt tcgcctggag ctcagtcccg gtatccgcgt actcggtgag
      601 cgtcatgtcc tgttccagca cgatgatcgc accgtgagaa gaccggctca gacgatccac
      661 cgcgtccacg acttcttcgg cgacttctat gcgcggtacg cggcgcagaa agcgcgcggt
      721 gcgcgggtag cgcatccggt agaagatcga gcgcacctcc ggctggaaca ggatgagcgc
      781 cgcgatcacc gccaactcga tccaggtcac gcacgcgccc cgaggatcgc ggccgccgcg
      841 tcgagcgcgt gacggttgtt cagcacgtcg tgcacgcgga accaggtcgc gccgagggtc
      901 agtgcgacca cgtttgctcc gatggtcccc gcgtcccgct ccgccggctt cgtcacgcct
      961 gtcaactctc caatgaatcg tttgcgcgat gcgccaacca tcacctgaaa gccaaggtcg
     1021 gccaatcgcg caagatgcgc aagtgcctgc accgaatgct ccggccgctt ggagaatcca
     1081 agtcccggat cgagtacgat tcggtcccgc gcgattccgc gcgcgacggc agttgctgcc
     1141 gccggtgcga gctcgtgaat gatctcgccc attacatcct cgtaaccggc attctggtaa
     1201 ctggccatgt tccccacgtc gcctcgcgag tgcatgagga tgagcgtgca gcccgtcgcc
     1261 gagcacacgt cggcgatgcg aggatcgatc cggagcgcgg agacgtcgtt gacgaccgtc
     1321 gctccggcgg cgatggccgc cgatgcgact tcagatttca ctgtatccac ggcgatcgat
     1381 acggacggcc atcgctgcgc gatctccccg atgaccggca ggacacgcgc catctcatcg
     1441 tcgattgcta caggtgtcgc accgggccgc gtggattcgc cgccgacctc gatcacatcg
     1501 gcgccgtcgt tgatcatccg ctccgcatgg tcgatagcct cgtcgaatgg caaaaaatta
     1561 cccccgtcgc taaagctgtc gggggtaatg ttcagtattc cgacgatggt cggcttacgc
     1621 aggtgctatc tccggcccgc cgaacaatgg cggacggact ggcttgggat tgggtagcgc
     1681 ggtcgtgacc ggtaccggcg gagccggcgg cagcgacgat ggtgcgcgcg gcggcagcgt
     1741 ttcgccgcgc gcgagcatct taacttcatc acccgacaac gtttcgcgct cgagcaacgc
     1801 ggccgcgacg gagtgcagga gatcgaggtt ttccgtcaac acatcggtgg ctcgctggta
     1861 cgcttcgcga atcaccttcg agatctcggc gtccaccgtc tgcgccgtct ggctcgagat
     1921 gtggcgtctg ctctgaatct cgcgacccag gaacagctcc tgctcgtcat cgccgacgag
     1981 gatcggaccg acaacgtcgg acagtcccca ctgcgagacg tatctgcgag cgatgttggt
     2041 cgcctgctga atgtcgctcg ctgcaccggt cgtgacgtgc tcctttccga a
//
LOCUS       DATIMD010000642         2765 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_860416, whole genome shotgun sequence.
ACCESSION   DATIMD010000642 DATIMD010000000
VERSION     DATIMD010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2765
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_860416"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1022)
                     /locus_tag="VLI40_14300"
     CDS             complement(<1..1022)
                     /locus_tag="VLI40_14300"
                     /inference="COORDINATES: protein motif:HMM:NF040140.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98403.1"
                     /translation="MLTSTHAIEPALNADELEVSRIRALRGPNYWRLSPVIASDVRLG
                     SLKSISSVDIPGFADRLIALMPTLREHPCSRGAEGGFVARLNEGTHLPHILEHVALEL
                     QSLAGCDVSFGRVVQSGDPGVWWVIVAYEEEEVGIASVQRAVDVVKASMTGMRLDMQQ
                     LVAEMRDLYEDTRLGPSTAAIVDEARRRHIPVRRLNSHSLVQLGLGRNLRRIQSTLTD
                     HTSAIGMEIAQDKEYTKLALSTVGLPVPRGEVACTLEEAVHAADEMGYPVLLKPVDSS
                     QGRGISGVLEDRSAIVHAWDEARRFSGRVIVERFHEGRDHRVLVVNGHAVTCAERIPA
                     HVTGDG"
     gene            1370..2179
                     /locus_tag="VLI40_14305"
     CDS             1370..2179
                     /locus_tag="VLI40_14305"
                     /inference="COORDINATES: protein motif:HMM:TIGR03709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006797 - polyphosphate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPK2 family polyphosphate kinase"
                     /protein_id="HSU98404.1"
                     /translation="MQLDAVDPELPINIRDDDAVSDDAPSDSKVQKKTAKRLAKLTTL
                     QAKLYGDGRYAVLVVLQGRDASGKDGTIRRVFGACNPQGCTVTSFKEPTPLERRHDFL
                     WRVHNVVPPRGMMGIFNRSHYEDVLAARVHGIVAKPIWMSRYDQINDFERMLVQNNVI
                     VLKFFLHVSRAEQRRRLLKRVDREDKNWKFRESDLDDRRLWDAYTDAYHDMLRRTSTK
                     EAPWYVVPADDKKVRNYFVTGTVVRALRKLKLHYPEADPNVLLRAEQILTV"
     gene            2176..>2765
                     /locus_tag="VLI40_14310"
     CDS             2176..>2765
                     /locus_tag="VLI40_14310"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSU98405.1"
                     /translation="MTGNPSTRRPAAAFIGLGAIGTPIATHVAANTTLAVWNRTRAVA
                     AEFASETGARDADSPAAAATGADFLLTCLPASAQVEEVLFGANGAAAGLEAGAMVIDC
                     TSGDPATSRKIADRLARSGIAFIDAPVSGGVSGAIAGKLTVMVGGDAATLERGRPILE
                     TFAGKIVHCGGIGTGDAVKAINNALLAVHVWSTAEGL"
BASE COUNT          527 a          879 c          856 g          503 t
ORIGIN      
        1 tgtccgtccc ccgtcacatg cgcagggatg cgctccgcgc acgtaaccgc gtgaccgttc
       61 accaccagca cacgatggtc acgtccctca tgaaagcgct ccacgatgac gcgtcccgag
      121 aaccttcgcg cttcgtccca cgcgtgcact atcgcggacc tgtcctccag tacgccagaa
      181 attcctcgtc cctggctgga gtctacaggc ttgagcagta ccggatagcc catctcgtca
      241 gcagcgtgga ccgcttcctc tagcgtgcac gcaacctcgc cgcgaggcac cggcagccca
      301 accgtgctca gcgccagctt cgtgtactcc ttgtcctggg cgatctccat gccgatcgcg
      361 ctggtatggt ccgtgagcgt cgactggatg cggcgcagat tccggcccag gccgagctgg
      421 acgagtgagt gcgagttgag gcgtcgaacc gggatgtgac gccggcgagc ctcgtcgact
      481 atcgcggccg tcgatggccc gagccgcgtg tcctcgtaca gatcgcgcat ctccgccacc
      541 agttgctgca tgtcgagtcg catgccggtc atcgacgcct tcacgacatc caccgcacgc
      601 tgcaccgacg cgatgccgac ctcctcttcc tcataggcga cgatcaccca ccacacacct
      661 ggatcgcccg actgtaccac gcgcccgaag gaaacgtcgc atccggcgag cgactggagt
      721 tccagcgcga cgtgctcgag gatgtgaggg agatgcgttc cctcgttgag gcgggcgacg
      781 aagccgccct ctgcgccccg cgagcacgga tgctcacgca gggtcggcat gagcgcgatg
      841 agtcggtccg cgaagccggg aatgtcgacc gaagatatcg atttcaacga tccaagacga
      901 acgtcggatg cgattacagg agacaggcgc cagtagttcg gaccacgtaa cgcgcgaatt
      961 cttgacactt cgagctcatc agcgttaagc gctggctcga ttgcgtgggt actggtaagc
     1021 atggcgatat gggctgctga cacgttggcg atgtgcaagc ggcgagccgc ggaaacagac
     1081 ggcgctggtg ttgatcaatc ccgctctgtc gatgctcgga gccgacccgc gaattgccct
     1141 ggccgatccg cacgatggat agcggctacc gcgtacggag acatcttcaa agacgtgttc
     1201 ccttaaagcg ttgcgacggc tggtgttaac acctcacggt taatgtgact tgtaagtgat
     1261 acgaccgggg gtgtgccccg gtactacgca accacgcttc cggataatcg ccccaataat
     1321 cgcgcgttct gcgctcagat ttttggtctc tcgtgtcgta acttacggga tgcaacttga
     1381 cgcagtcgat cccgagcttc ccatcaacat tcgggacgac gatgccgtct ccgatgacgc
     1441 tcccagtgac agcaaggttc agaagaaaac cgcaaaacgc ctggcgaagt tgacgacgct
     1501 tcaggccaag ctgtatggcg acggacgcta cgcggtgctg gtagttctcc agggtcgcga
     1561 tgcgtctggc aaggatggga cgatccgtcg ggtattcggc gcgtgcaacc cgcaggggtg
     1621 cacggtgacg agcttcaagg agcccacgcc gctcgagcgc cgccacgact ttctctggcg
     1681 cgtgcacaac gtcgttccac cgcgcgggat gatggggatc ttcaaccggt cccactacga
     1741 agacgtactc gccgcacgag tccacggcat cgtcgcgaag ccgatctgga tgtcgcgcta
     1801 cgaccagatc aacgacttcg agcggatgct ggtgcagaac aacgtgatcg tcctcaagtt
     1861 ctttctgcac gtgtcgcgtg cggagcagcg acgcaggctc ctcaagcgcg tcgaccggga
     1921 agacaagaac tggaaattcc gcgagtcgga cctggacgac cggcggctct gggatgctta
     1981 cactgacgcg tatcacgaca tgctgcgccg cacgtccact aaagaagcgc cgtggtacgt
     2041 ggttcccgcg gacgacaaga aggttcgcaa ttattttgta acgggaaccg ttgtgcgtgc
     2101 actcaggaag ctcaagcttc actatcctga agcggatccg aacgttcttc tcagggcgga
     2161 gcagattctc acagtatgac cggcaatcca tccactcgcc gtccggctgc ggcgttcatc
     2221 ggcctgggcg caatcggcac gccgatcgcc actcacgttg ccgccaacac cacacttgca
     2281 gtctggaacc gcacccgcgc cgtagcggcg gagtttgcgt ccgaaacggg cgcgcgagac
     2341 gcggattcgc ccgccgccgc cgcgaccggc gcggacttcc tgctcacgtg cctccccgct
     2401 tctgcgcagg tcgaggaggt gctctttggc gcgaacggag cggccgccgg cctcgaggcc
     2461 ggcgcgatgg tcatcgactg cacatcgggc gaccctgcga catcgcggaa gatcgccgat
     2521 cgtctcgcac gaagcggcat cgcgttcatc gacgcgcctg tgagcggcgg tgtgtcgggc
     2581 gcaatcgccg gaaagctgac agtgatggtg ggtggcgatg ctgccacgct ggaacgtggt
     2641 cggccgatcc tcgagacgtt cgcgggcaag atcgtgcact gcggcgggat cggtacgggc
     2701 gacgcggtca aggcaataaa caatgcgttg ctggccgtgc acgtctggtc cacggccgag
     2761 gggct
//
LOCUS       DATIMD010000643         6985 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4903774, whole genome shotgun sequence.
ACCESSION   DATIMD010000643 DATIMD010000000
VERSION     DATIMD010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 6985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6985
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4903774"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..445)
                     /locus_tag="VLI40_14315"
     CDS             complement(<1..445)
                     /locus_tag="VLI40_14315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98406.1"
                     /translation="MRLTTRRAITTCTMLLVTAATTLPASPAHAQGNSARNSARDSTG
                     FPQPTIAATVVLLAAGAAVDRPMRRLIADRGHSSVVNSLSNAGDDMGTAGHIIPALAG
                     SYVIERIAGRRRPADDIVDAAAGYAASDIIEGLLKSAVGRERPMVS"
     gene            complement(591..1070)
                     /locus_tag="VLI40_14320"
     CDS             complement(591..1070)
                     /locus_tag="VLI40_14320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSU98407.1"
                     /translation="MNKMTTCMWFDHGEARKAAEFYASVFPDSKVGEGHLSPADNPST
                     NAGEELTVEFTVLGQSFVGLNGGPNFKPNESVSFMVLTDNQDDTDRYWNAIVGNGGEE
                     SQCGWCKDRWGFSWQITPRVLLEATTDPDRAAAKRAMDAMTTMRKIDIAKIEAARRG"
     gene            complement(1205..1588)
                     /locus_tag="VLI40_14325"
     CDS             complement(1205..1588)
                     /locus_tag="VLI40_14325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98408.1"
                     /translation="MRIVPAATNAAGVALLLAALIFDPSRTSAQQIAATRAGIAPVVM
                     SAAPMAAQPQDSVSGHRGSRKSHVVIGVVAGALAGGVLGGLSARNSKDTGTALDGVAT
                     AASVTIGALAGLIVGGVIGAFVPHN"
     gene            2163..2561
                     /locus_tag="VLI40_14330"
     CDS             2163..2561
                     /locus_tag="VLI40_14330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98409.1"
                     /translation="MRTRVEETLGYQSGDTVRGVRAGLDGDEVPEYLLIGSARFACGT
                     GGCSILILDGRTGARRGEVFGQTLVILRSTRPGTHAALETYAHGSATTGELDRWGFNG
                     ARYRIVSRRFLKPHTVDSLFTAWNRLPSIP"
     gene            complement(2686..2758)
                     /locus_tag="VLI40_14335"
     tRNA            complement(2686..2758)
                     /locus_tag="VLI40_14335"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2723..2725),aa:Phe,seq:gaa)
     gene            complement(2900..3427)
                     /locus_tag="VLI40_14340"
     CDS             complement(2900..3427)
                     /locus_tag="VLI40_14340"
                     /inference="COORDINATES: protein motif:HMM:NF018984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CGNR zinc finger domain-containing protein"
                     /protein_id="HSU98410.1"
                     /translation="MPEHRPGTPGQYYVLESFLWREFTGVDDWLEWTEEHGLARTATS
                     TREIFDQAMALRDALRSLEAMNNGERADDAPERLLNALIESLGVHPVVEPFGDVKLRA
                     RAATGRSAPIASILVMALDAMSRGVWTRFKLCQDPTCRASFYDATKNGTKTWCSVDVC
                     GARNKMRRLRERQKG"
     gene            3540..4535
                     /locus_tag="VLI40_14345"
     CDS             3540..4535
                     /locus_tag="VLI40_14345"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSU98411.1"
                     /translation="MSSATQRKARVRAFAALGLSVFCIAWSAPLVRWADVPGVTSAFY
                     RALVAAVVLVPYWLISRRAKMPSTRATLIALLGGAFFAMDLALFNTAVLKTSATTAMV
                     LTNNSPVLVGLGTWLLFRERPKLTFWIGLVLALGGCIVMVGGDMIRPGGGGVGIGDVG
                     GDMLAAAASVFFAAYLITTGRVRASMDTITFTTLAIIGSVVTMFVVCLLMNAPLAGFK
                     ASAWPSLIALGLVTQVTGYLGVTYALGRLPTTAASVGLLGVAPVTALLDVVFLGEPLQ
                     LAQIIGGTLVLAGIFVVNRRTADNTLTKRNDRPSERHTAGTTATGERLSVELERL"
     gene            4585..5355
                     /locus_tag="VLI40_14350"
     CDS             4585..5355
                     /locus_tag="VLI40_14350"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HSU98412.1"
                     /translation="MLDAPRHVRSVVASLGPPLPVPTGARPRAALGRFWYPRPPLWPA
                     ALSAALHVAVVLGLIWTVGDVLDRPEPPGQLASFIPPPPPTGPATAGGDHIAAFTSLA
                     YFSGTGDGTIGHAKETNRRAGLATTHDTPTVAPPADTAPTLGDDVYTSFEVDNAVQFS
                     DGSAVPQYPPELLARRVPGTVTVRFVVDTSGAADVQSLQIIDSSDPQFAASVRDALPR
                     MKFQPARLNGKRVRQLVEQPFRFNVDTTRPDSQDSATK"
     gene            5376..6824
                     /locus_tag="VLI40_14355"
     CDS             5376..6824
                     /locus_tag="VLI40_14355"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSU98413.1"
                     /translation="MAQSLPHFRLFVTGATTSAADATVFSPYDRSPIATFAVADAGVI
                     ETALATASALFHGRARWLEPAARIDILRKLADRMDDDVEQLAMTIAREGGKPLVDARA
                     EAIRAADSVRGCVDVLRTQHGSEIPMRLNAASSHHMAYTSLEPAGPVVAISAFNHPLN
                     LIVHQVATAIAAGCPVIAKPAERTPMSCFQFAKMLHDAGLPDGWCQVVVPMDHALSER
                     LATDPRVAFLTFIGSAKVGWMLRSKLPPGTRCALEHGGAAPVIVAQDADVEKMLPMLV
                     KGSFYHAGQVCVSIQRIFAHRSIAKQLADKLSERVKKLRVGDPTSADTEVGPLIAPSE
                     VDRVEQWVREAKDGGAKVLCGGKRISDTCYACTVLYDPPRDAKVSTLEVFGPVVCVYP
                     YDELDEAIDRANALPFAFQSAICTRSLDTALRAFRRLDATAVMVNESTTFRVDWMPFA
                     GRRTSGLGTGGIGYSIRDMQVEKMLVIKSDEL"
BASE COUNT         1256 a         2209 c         2113 g         1407 t
ORIGIN      
        1 cgctcaccat cggccgttcc cgtcctaccg cgctcttgag cagtccttcg atgatgtccg
       61 acgcggcata gccagcagcc gcatcgacga tgtcatccgc tggacgtctt cgtcccgcga
      121 tgcgctcgat cacatacgaa ccggccagcg ccggtatgat gtgtcccgcc gttcccatgt
      181 cgtcgccggc gttcgaaagc gaattgacaa ccgaactgtg accgcgatcg gcgatcagtc
      241 ggcgcatggg ccggtcgacc gcagcgccag cggcgaggag cacgacagtg gcggcgatgg
      301 tcggttgtgg aaagccggtg ctgtcgcgag cgctgttgcg agcgctgttg ccctgtgcgt
      361 gagccggcga cgctggaaga gtcgtcgccg ctgtgacgag cagcatggtg catgtcgtga
      421 tggcacgacg ggtggtgagg cgcatggcgt ggtgcatggc gaggcgcatt actggtgcca
      481 gtcgtgccgc gactcgcggg tgtactgtta cgccgcgtcg ggtgcgagtg gtgtcagcac
      541 gaccgtgtcg agcgaccgga aaccgccgcc ggtgattttg cttctcgccc tcagccccgc
      601 ctcgcggcct cgatcttcgc gatgtcgatc ttccgcatcg tcgtcattgc gtccattgcg
      661 cgcttcgctg cggcgcggtc cggatcggtc gtcgcttcga gaagcacgcg cggtgtgatc
      721 tgccaggaga agccccagcg atccttgcac cagccgcact ggctctcctc accaccattg
      781 cctacgatag cgttccagta acgatcggtg tcgtcctggt tgtcggtcag gaccatgaag
      841 cttaccgact cgttcggctt gaaatttggt ccgccattga gaccgacgaa cgactgaccc
      901 aggacggtga actcgacggt gagctcctcg cccgcgttcg tagacggatt gtccgcaggg
      961 gaaaggtggc cctcgccgac cttgctgtcg ggaaacacgc tcgcatagaa ctccgccgcc
     1021 ttgcgggcct cgccgtggtc gaaccacatg caggtggtca tcttgttcat atcattcttc
     1081 tcggttgccg ccgatgagcg cgatgccggc gcgttgcggg tgcgtattca tgatctggat
     1141 gccgcgaccg gcaactttga taccgctaag ctcgagcgca agaccagcga actcgacagc
     1201 tacttcagtt atgcgggacg aaggcaccaa tcactccgcc tacgatcagt cctgcgagcg
     1261 caccgatggt aacactcgcg gccgtggcga cgccgtccaa tgcagtgccg gtatccttgc
     1321 tgttgcgcgc actgagccca ccaagaacgc cgccggccaa cgcacctgcg acgacaccga
     1381 tcacgacatg tgatttacga gatccccgat gaccggacac ggagtcttgg ggctgcgcag
     1441 ccatcggagc ggccgacatg actacgggtg ctatccccgc gcgtgtcgcc gcgatctgtt
     1501 gagcgctcgt ccggctcggg tcgaagatta gcgcggcaag cagaagagca acgcccgcgg
     1561 cgttggtggc agccggaacg attcgcatac gctgtctgtc acaggatgga gagcgataaa
     1621 cataccgccg ccggctgccg gtggtaatca actgaacgca caaacggcat gaacgacgaa
     1681 gccctcaggt cgcctcgctg cggaggttgg gctcctcaga ggatgcatga atactgtcga
     1741 tgatgacttg cgctcgcgat tggtccataa cagactcaag ccttgagatc acgcccacat
     1801 ccgcagcgga gtagccttgg tgcatgtcgt tgatgttttc ggctcgccag cggcagtagc
     1861 ggtcggatct gcggtagcag ccttgatcgt gattggctgg taggtgacaa tcacagctgt
     1921 gagatggtgg agtggagatc gacttggtac gctctagcca tggaggcccg cgcgccgcga
     1981 attatctgtc gtctcctaca ctggctgtta ccttcgctct cgcgcttcta ataccgtcgg
     2041 cgccgaagac ggagcatgcg agccggcacg gcagtcagtt tcacacgact atccaatcct
     2101 cgcgggagac agcggttcgt tttgatgtct actcggccat cccagtgcgt attcccgcat
     2161 tagtgcgtac ccgcgtcgaa gaaacgttgg gctaccagtc cggcgacacc gtccgcggcg
     2221 ttcgcgctgg cttggatggc gatgaagtac ctgagtatct gctcatcggc agcgctcgct
     2281 tcgcctgtgg aactggcgga tgctcgattc tcattctgga cggccgcaca ggcgcgcgac
     2341 gtggcgaggt attcggtcag acgctcgtca ttttgcgctc aacgcgacca ggcacccatg
     2401 ctgcgctcga gacctacgcg cacggaagcg ccacgacggg cgagttggac aggtggggct
     2461 ttaacggcgc gcggtatcgc attgtgtcgc gacgcttcct caaaccccac actgtagact
     2521 ctctgttcac cgcatggaac aggctgccca gcattccata gccaatggcc gctcggtcac
     2581 gcgacgatgc ggtccctcag tcagtcccca gtttgcaaaa cgcgtccagc agctactgga
     2641 cgcgtcaggt ttgccaagtt gttatctggt atgatcttac ctcagtggcc aggggcggaa
     2701 tcgaaccgtc gacacgcgga ttttcagtcc gctgctctac caactgagct acctggccaa
     2761 gccattgtcc tgcaatcact taccgctttc accagaatct ggacgaatca ccccgcccac
     2821 ggttcccggt aagccctaag aatctaatga cgcccgcttc ccgacggtac cgggacaaac
     2881 agccatggca ccagcagtct catcccttct gccgctcccg tagccgtcgc atcttgttcc
     2941 gggccccgca cacgtccacc gagcaccatg tcttcgtccc gttcttcgtc gcatcataaa
     3001 acgacgccct gcaggtggga tcctggcaca gcttgaaccg ggtccacaca ccgcgcgaca
     3061 ttgcatcgag cgccatgacc agaatactgg cgatcggcgc gctgcgcccg gtcgccgccc
     3121 gcgcccttag cttcacatct ccaaacggct cgaccaccgg atgcactcca agcgactcga
     3181 tcagcgcgtt caacagtcgc tcaggcgcgt catcagctcg ctcgccattg ttcatcgctt
     3241 cgagcgagcg caacgcatct ctcagcgcca tcgcctgatc gaagatctcg cgcgtggacg
     3301 tcgcagtgcg cgcaagccca tgctcttcag tccactccag ccaatcgtcg acgccggtga
     3361 actcacgcca cagaaacgat tccagcacgt agtactggcc cggcgttccc ggccgatgct
     3421 cgggcattca gcgcctccct gttttcacag attgactttg gctacaggtc gcgttaccat
     3481 ctaacatgta ttgatggtaa cattccggag ttgatctgac aagcactact tcccagaacg
     3541 tgtcatctgc aacacaacga aaggctcgcg tccgcgcctt cgctgcgctc gggctcagcg
     3601 tcttctgcat agcatggtct gcaccgctcg ttcgatgggc ggacgtaccg ggtgtcacat
     3661 cggcgttcta tcgcgcactc gtcgcggctg tagtgctcgt cccttactgg ctcatctccc
     3721 gccgtgcgaa gatgccgtcg acgcgcgcga cgctcatcgc gctgctcggc ggcgcgttct
     3781 tcgcaatgga cctggcactc ttcaacaccg cggtgctcaa gacgtcggcg actacggcga
     3841 tggtgctcac caacaactct cctgtgctgg tggggcttgg cacatggcta ctatttcgcg
     3901 agcgtcccaa actcactttc tggatcggtc tggtgctggc actcggcggc tgcatcgtca
     3961 tggtcggcgg cgacatgatc cgaccgggcg gaggcggtgt ggggatcggc gacgtgggcg
     4021 gcgacatgct cgcagcagct gcatcggtgt tcttcgctgc ctacctgatc acgacgggac
     4081 gcgtgcgcgc cagcatggat acgataacct tcacgacact cgccataatc ggcagcgtcg
     4141 tcaccatgtt cgttgtctgt ctattgatga atgcgccact ggctggattc aaggcgtccg
     4201 catggccatc gctcatcgca ctcggactcg tcacacaggt tacgggctac ctcggcgtta
     4261 cctacgcgct cggccgtctt ccgacaactg cggcgtctgt cggcttgctg ggcgtcgcgc
     4321 cggtcactgc gcttctcgac gtggtgttcc tcggcgagcc gcttcaactg gcgcagataa
     4381 tcggcggcac gctcgttctg gcaggcatct tcgtggtaaa ccgtcgcacg gctgacaaca
     4441 ctcttacaaa gcgcaacgat cgcccgtcag aaaggcacac ggcggggacg actgccactg
     4501 gcgagcggct gtcagtcgaa ctggaacgat tgtaagtttc agaactgcgc cactgccagg
     4561 cgcgcaatct gaggggccat tccaatgctg gatgcacctc gtcatgtcag aagtgtcgta
     4621 gcgtcactcg gtccacccct accggtccca actggcgcac gtccccgcgc agcgctcgga
     4681 cgattctggt atccgcgccc gccgctctgg ccagcggcgt tgagcgcagc gctgcatgtc
     4741 gcagtagtcc ttggactgat ctggacggtc ggcgatgtac tcgaccggcc ggaaccgccg
     4801 ggtcagttgg cttccttcat tccaccccct ccacctaccg gtccagcaac agccggcggc
     4861 gatcacatcg ccgcatttac atcgctggca tacttctccg gcacgggcga cgggaccatt
     4921 ggccacgcaa aagagaccaa tcggcgcgca gggctggcga ccacacatga cactcccact
     4981 gtcgccccac ccgccgatac ggctccgaca ctcggcgacg atgtctacac cagctttgaa
     5041 gtcgacaacg ctgtgcagtt ttcagacggc agtgcggtcc ctcagtaccc gccggaactg
     5101 ctggcccgtc gtgtgccggg aacggttacc gtgcggttcg tggtcgacac atccggtgcg
     5161 gccgacgttc aatcgctcca gataatcgac tcttccgatc cgcagttcgc tgcatccgta
     5221 cgtgacgcgc ttcctcgcat gaaattccag ccggcacgtc tcaacggcaa acgcgtgcgt
     5281 caactggtgg agcagccatt tcgcttcaac gtcgacacga ccagaccgga ttcgcaggac
     5341 tcggcgacga aatagcaaca acagtagttt gaatcatggc acaatcgctc ccgcattttc
     5401 gtctcttcgt taccggcgcg accacctcgg cagccgacgc aacggtattc tctccgtacg
     5461 accgctcacc gatcgcgacc ttcgctgtcg ctgacgccgg tgtgatcgaa acggcgctcg
     5521 caactgcatc cgctctgttc cacggcaggg cgcgatggct cgagcccgcg gcacgcatcg
     5581 acattctccg caagctcgcg gaccgaatgg atgacgacgt cgagcagctc gcaatgacta
     5641 tcgcgcgtga aggtggtaaa ccactggtgg atgcgcgcgc cgaggcaatt cgcgctgcag
     5701 attcggtgcg cggatgcgtg gatgtgctgc gcactcaaca tggcagcgag attccgatgc
     5761 gattgaatgc cgcatcatcg catcacatgg cgtacacgtc gctcgagccc gcgggtccgg
     5821 tggtcgcgat aagcgcgttc aatcatccgc tcaatctcat cgtgcatcag gtcgcgactg
     5881 cgatcgcggc tggctgtccc gtgatcgcga agcccgccga gcgcacgccg atgtcgtgct
     5941 ttcagttcgc gaagatgctg cacgacgcgg gattgccgga tggctggtgt caggtggtgg
     6001 tgccgatgga tcacgcgctg tcggagcggc tcgcaaccga tccgcgcgtg gcgtttctca
     6061 cgttcattgg aagtgcgaaa gttggctgga tgctgcgatc gaagctgccg cccggtacac
     6121 gctgcgcgct ggagcacggc ggcgcggcgc cggtgatagt cgcgcaagac gccgacgtcg
     6181 agaagatgct tcctatgctg gtgaagggct cgttctatca cgcagggcag gtgtgcgttt
     6241 cgattcagcg gatcttcgcg caccgctcga tcgcgaagca gcttgccgac aagctgagcg
     6301 agcgtgtgaa gaagcttcgc gtcggtgatc cgacgagcgc ggacaccgaa gtcggtccgt
     6361 tgatcgcacc gtctgaagtc gatcgcgtcg agcagtgggt gcgcgaggcg aaagatggtg
     6421 gtgcgaaagt tttgtgcggt ggcaagcgaa tctccgacac gtgctacgcg tgtacggtgt
     6481 tgtacgatcc gccgcgggac gcgaaggtca gcactctcga agtatttggt cccgtcgtgt
     6541 gcgtgtatcc gtacgacgag ctggacgaag cgatcgatcg cgcgaacgcg ctgccgttcg
     6601 cgtttcagtc agcgatatgc actcgctcgc tcgacacggc gctgcgcgcg ttccgtcggc
     6661 tcgatgcgac cgcggtgatg gtcaacgaga gcacgacttt ccgggttgac tggatgccgt
     6721 tcgcgggacg gcggacgtca gggcttggca caggcgggat cggttattcg atccgcgaca
     6781 tgcaggttga aaagatgctc gttataaagt cggacgagct gtaggtcggt gtggtggatc
     6841 gaaccgcagg actcgtcgga aatcgtcatt cccgctttcg cggcgcctag tgcgtcgtgt
     6901 tcgctggcgc tgccggcgcg gcggccggct gaatcaccgt tgaccgctcg ttcggggaaa
     6961 tcgggttgag cggatcgtgc cagac
//
LOCUS       DATIMD010000644         8827 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1149065, whole genome shotgun sequence.
ACCESSION   DATIMD010000644 DATIMD010000000
VERSION     DATIMD010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8827
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1149065"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1455)
                     /locus_tag="VLI40_14360"
     CDS             complement(<1..1455)
                     /locus_tag="VLI40_14360"
                     /EC_number="6.2.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030729 - acetoacetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019287 - isopentenyl diphosphate
                     biosynthetic process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetate--CoA ligase"
                     /protein_id="HSU98414.1"
                     /translation="MTSSRLQPIWRPSPEQVRDANLTRFIASLRSRGELAAGETGVPL
                     PYGVLHEWSIHNREAFWRATAEFCGLIADGFDSSRCIGLDRMAPPDAELGPKWFDGAT
                     LNFAENLLRFRDDRPAIISWNETGRQQQLTFAELGGEVSRIATALRDMGVGVGDRVAG
                     FLPNLPETIIAMLAATTLGAVWSSCSPDFGVQGVLDRFGQIEPKVLVCADGYRYAGKE
                     IDCLARVREIASRIPSITNVIVVPYLNEHVDAATVPRAVRWDSLRRAGRSPAFERLPF
                     DHPVYVMYSSGTTGLPKCMVHGAGGTLLQHLKELVLHTNLTRDDRMFYFTTCGWMMWN
                     WMVSSLAVGATVVLYDGAPLQPRPDVLWNLIERERVTVFGTSAKYLALAEKAGLVPKT
                     SHDIASLRAILSTGSPLADHSYDYVYQQVDSDVHLASISGGTDIISCFALGNPTAPVY
                     RGELQCRGLGMAVDVFDAAGNGIVGTPGELVCTRA"
     gene            complement(1691..2890)
                     /locus_tag="VLI40_14365"
     CDS             complement(1691..2890)
                     /locus_tag="VLI40_14365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HSU98415.1"
                     /translation="MPIYHKLGEIPRKRHIAFRKPNGGIYAEELMGHEGFTGTSSLLY
                     HTYPPTTVKSVRRVKEMKFEEDKDVTLRHRHFLTSRVKKGGSPTMDRIPLLFNQDVAM
                     LYVEPSVEDKHFYRNAQADELVYVSKGKGVLESVFGELPFGEGDYLVIHRGIMHKYRF
                     DKDAEQPKLLIMESRGHIRWPKKYRNEFGQLVEGAPYSERDIRRPVFVPPHDEMGDFP
                     VYVKQYDGINELVLDHHPFDVVGWDGYFYPWAFNIMDFEPIVGRVHQPPPVHQTFQGD
                     GFVVCSFCPRPYDFHPEAIPAPYNHSNVDSDEVLYYASSEFMSRKGIEFGSITHHPDG
                     LPHGPHPGRAEASIGAKYTDELAVMMDTFRPLKVAKQALDIEDPNYHKSWISSQHEQA
                     AFSPPTS"
     gene            complement(2894..4036)
                     /gene="hppD"
                     /locus_tag="VLI40_14370"
     CDS             complement(2894..4036)
                     /gene="hppD"
                     /locus_tag="VLI40_14370"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003868 - 4-hydroxyphenylpyruvate
                     dioxygenase activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HSU98416.1"
                     /translation="MATATLPEQTATGDTFPINGTDYIEFYVGNAKQAAHFYVSAFGF
                     SVVAYRGPETGVRDKASYLLQQDKIRFVLTTAIRPDLSDEAKTISDHVQKHGDGVRDL
                     ALWVDDARDAYTKAVARGAESVHEPRVMRDDNGEIVIAAIKTYGETIHSLVERKNYKG
                     LFMPGFRPVTQAYQPGSVGLKYVDHCVGNVELGKMNVWVDFYATVMGFRNLLTFDDKM
                     ISTEYSSLMSKVMANGNDRIKFPINEPASGKKKSQIDEYLEFYKGPGVQHMALATDDI
                     IGTVKQLNARGVQFLSGVPGTYYTDLQARIGKIDEPIEELAKLGILVDRDPDGYLLQI
                     FTKPVEDRPTVFYEIIQRKGAKSFGAGNFKALFEAIEREQELRGNT"
     gene            complement(4074..4247)
                     /locus_tag="VLI40_14375"
     CDS             complement(4074..4247)
                     /locus_tag="VLI40_14375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98417.1"
                     /translation="MSESDVGELARLYLGNILYALELASLSLEEQGKGPDAQFYRGIA
                     RKLAEAHGASRKR"
     gene            complement(4264..5058)
                     /locus_tag="VLI40_14380"
     CDS             complement(4264..5058)
                     /locus_tag="VLI40_14380"
                     /inference="COORDINATES: protein motif:HMM:NF033484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HSU98418.1"
                     /translation="MHFAVAAGSDVGRVRKGNEDSFFADANEYRGLFIVADGMGGHAA
                     GEVASQMAVQVVSVDLEKLKDLESADALEMVSLALRHANRAVFERSAAERDKMGMGST
                     ASVLVLADERFIIGHLGDSRIYLYRDGELRQITHDHSVVQEQIDAGLITREAAKNHKQ
                     SNVITRCVGMGWDVEPDITDGDVRQGDVFLLASDGLTGMVDDWRLQQLLGSRATPDRL
                     VDAMISEANARGGVDNITAVVVRVHSSSAMATGAHPTPNPGAGSLG"
     gene            complement(5107..6915)
                     /locus_tag="VLI40_14385"
     CDS             complement(5107..6915)
                     /locus_tag="VLI40_14385"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSU98419.1"
                     /translation="MTAPALSFHEEEALGKAYDSRLMRRLLAFAAPYRALIAIALFFL
                     MIEGALQLVGPFLTQRVIDVAIPQHDYAAIRIAVALYALSLFVELGTSYGQTWFTALL
                     GQNVMRDLRLQLFSHLQRLPIAFFDRNPAGRLITRVTSDVETLNELFTAGVVSGMGDL
                     FTLLAISVAMLVTDWRLALAAFGVIPLVVLVSHVFRVKVREAYRDIRTRLARINAFLQ
                     ERLSGMRVVQLFGREHDEARRFDELNRSHLDAHLRSITVYALYFPAIEILTSVALASL
                     IVAGAARVEAATLTVGTVAAFLQLVRRFFQPLQDLSDKYNTLQTAMASSERIFHLLDT
                     EPWVDVGGDEHLTRERPRTVLVEFQNVWFAYDRPHSAAANVAGEPEWVLRNVSFTARP
                     GQTLAIVGHTGAGKTTIVSLLMRFYDPQKGRILVNGKDVRDMPVEQLRALIGYVQQDI
                     FLFAGDVASNIRLSAPLSDEQVQAAAEQVGADRIIRRLTNGYHQVLGERGASISVGER
                     QLLSFARAVAADPALLILDEATSAVDSEVEAEIQQALRVLLAGRTTIAIAHRLSTIVD
                     ADDIIVMHHGEVVEHGTHDALLALDGLYARLWRLQI"
     gene            7001..7267
                     /locus_tag="VLI40_14390"
     CDS             7001..7267
                     /locus_tag="VLI40_14390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004946303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HSU98420.1"
                     /translation="MSIIAWIILGLLAGAIAKAISPGTDPGGIIVTMIIGIIGAFIGG
                     WIGGLITGVGLTGFSLWSLVLAIVGALILLWIYRISVRGRTTTV"
     gene            7394..>8827
                     /locus_tag="VLI40_14395"
     CDS             7394..>8827
                     /locus_tag="VLI40_14395"
                     /inference="COORDINATES: protein motif:HMM:NF036484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HSU98421.1"
                     /translation="MKDHLVVRGARQHNLKGFDLEIPRRSYTVITGPSGSGKSSLAFD
                     TIYAEGQRRYVESLSAYARQFLERMEKPDVDSIEGLSPAVAIEQKNPTKTSRSTVGTA
                     TEIYDYLRLMWARIGRTFCPKCGREMRPDSVTSVTDTVLSLTPDTRFAVAFPLKLSAR
                     VTTPVVIENLRAQGFLRVSVDGAIKSLDEIGADEDLTRAKELLVVVDRLSVKPDASSR
                     LAESVGTSFREGDGDVVIVFTAPVRSPLNGEMVTRLRFTDRFECANDGTRLPAPTPQL
                     FSFNNPRGACPRCNGFGAILEYDESLVVPYPERSLRDGAIEPWTKPRYDNKRRTLAEF
                     AKKNGISMDTPWAELSSAQRDMLLNTEARRGYVGIFPFLRALEEKRYKQYIRVFLRQY
                     QTAQECPACHGAKLQPESLNVLIADRNIAQVAELPIDRLSEWLETLELSDYEIAIAEM
                     ILREARDRVRFLRDVGLDYLTLNRSTRT"
BASE COUNT         1663 a         2815 c         2611 g         1738 t
ORIGIN      
        1 cgcgcgcgtg catacgagct cgccgggcgt gcccacgatg ccgttgccag cagcgtcgaa
       61 cacgtcaacc gccattccaa gtccgcgaca ctgcagctcg ccgcgataca ccggcgccgt
      121 cgggttcccc agtgcgaagc atgagatgat gtcggttcca ccgctgatgc tggcgagatg
      181 cacgtcgcta tcgacttgct gatatacgta gtcgtagctg tggtctgcga gcgggcttcc
      241 cgtagacaga atcgcgcgca atgacgcgat gtcgtgactc gtcttgggaa ccagaccagc
      301 cttctccgcc agtgccagat atttcgcgct ggttccgaac accgtcacgc gttcgcgctc
      361 tatcagattc cacagaacgt ccggtcgcgg ctgcagggga gcgccgtcat acagcacgac
      421 agtcgcgcca accgcgagcg agctcaccat ccagttccac atcatccagc cacaggtggt
      481 gaagtagaac atccggtcgt cgcgcgtgag attggtgtgc agcaccagct ccttgagatg
      541 ctgcagcagc gtgccgccgg caccatgcac catgcacttc ggaaggcccg tcgtgccgga
      601 tgagtacatc acgtacaccg gatgatcgaa tggcaagcgc tcgaacgctg gcgagcgacc
      661 ggcgcgacgc agcgaatccc agcgcaccgc gcgtggaact gtcgccgcat ccacgtgctc
      721 gttgagatac ggcaccacta tgacgttggt gatcgatgga attcgcgacg caatctcgcg
      781 cacgcgcgcc aggcagtcga tctcctttcc cgcatacctg taaccgtccg cgcacaccag
      841 cacctttggc tcgatctgac cgaatcggtc gagcacgccc tgcactccga aatcgggcga
      901 gcacgagctc catactgcgc ccagcgtcgt cgccgcgagc attgcaatga tggtctcggg
      961 gagattcggc aggaagccgg cgacccgatc gcctacgcca acgcccatgt cgcgcagtgc
     1021 ggtcgcgatg cgactcacct cgccgcccag ctccgcgaac gtcagttgct gttgccgtcc
     1081 agtctcattc cacgagatga tcgcgggacg atcgtccctg aaacgcaaca gattctcagc
     1141 gaagttgagc gtagcaccgt cgaaccattt aggtccgagc tccgcatccg gcggagccat
     1201 gcgatccaga ccgatgcacc tgctcgaatc gaaaccgtca gcgatcaacc cgcagaactc
     1261 agccgttgcc cgccagaatg cctcgcgatt gtggatggac cattcgtgca acacaccata
     1321 cggcaacggg acgccggtct cgcccgcggc aagctcgccg cgcgagcgca gtgacgcgat
     1381 gaaccgtgtg aggttcgcgt cgcgcacctg ttccggcgac gggcgccaga taggttgcaa
     1441 tcgggagctt gtcattcccg agaaagaacg tcattcccgc tgtagggcgc ggattcatcc
     1501 gcgcctcggg aatcgatgcg cccctcgtca ttcccgcgaa agcgggaatc catgttatcg
     1561 aactctgggt atgatgacag cagagagcca gtcggcatca gatggattcc cgctttcgcg
     1621 ggaatgacgg agtcaggttc ccgcgttcgc gggaatgacg agcttcagcg acgcgcacca
     1681 gcaaccagac tcaggaggtc ggcggcgaga acgctgcctg ctcatgttgc gacgagatcc
     1741 acgacttgtg gtaattcgga tcttcgatgt cgagcgcctg cttcgcgacc ttgagtggac
     1801 ggaacgtgtc catcatcacc gcaagctcgt cggtgtactt ggcaccgatc gacgcctctg
     1861 cgcgtcccgg atgcgggccg tgcggcaatc cgtccgggtg gtgcgtgatc gagccgaact
     1921 cgattccctt gcgcgacatg aactcgctcg acgcgtagta cagcacctcg tccgagtcga
     1981 cgttcgagtg attgtacggc gccggtatcg cttctggatg gaagtcatac ggacgcgggc
     2041 agaaggagca aactacgaac ccgtcgccct ggaatgtctg atgcaccggc ggcggctggt
     2101 gcacgcgtcc gacgatcggc tcaaagtcca tgatgttgaa cgcccacgga tagaaatatc
     2161 cgtcccagcc aactacgtcg aacggatggt gatccagtac cagctcgttg atcccgtcgt
     2221 attgctttac gtacaccggg aaatcaccca tctcgtcgtg cggcggaacg aacaccggcc
     2281 ggcgaatgtc gcgctccgaa tacggcgcac cttccacgag ctggccgaac tcgttgcgat
     2341 acttcttggg ccaccgtatg tgtcccctgc tctccatgat gagaagcttg ggctgctcgg
     2401 cgtccttgtc gaaacgatac ttgtgcatga tgccgcgatg gatcacgaga tagtcaccct
     2461 cgccgaacgg cagctcgccg aagaccgact cgagcacgcc ctttcccttg ctcacataca
     2521 ccagctcgtc ggcctgcgcg ttccggtaga agtgcttgtc ctccacactc ggctcgacgt
     2581 acagcatcgc aacatcctgg ttgaacagca atggaatgcg atccatcgtc gggctgccgc
     2641 ctttcttgac gcgcgacgtg aggaagtgac gatgacgcag cgtcacgtcc ttgtcctcct
     2701 cgaacttcat ttcctttaca cgccgcaccg acttgaccgt cgtcggcgga tacgtgtggt
     2761 agagcagcga agacgttccg gtgaaacctt cgtgtcccat cagctcttcg gcgtatatcc
     2821 cgccgttggg cttccggaag gcgatgtgcc gctttctcgg gatctcgccc aacttgtgat
     2881 agataggcat ggcttacgta ttcccgcgca attcctgctc acgctcgatg gcttcgaata
     2941 gcgccttgaa gttgccagcg ccgaagctct tcgctccctt gcgctgaatg atttcgtaga
     3001 acaccgtcgg tctgtcctcg accggcttgg tgaagatctg cagcagatat ccgtccggat
     3061 cccgatcgac cagaatgccg agcttcgcaa gctcctcgat cggttcgtcg atcttgccga
     3121 tgcgcgcctg cagatctgtg tagtacgtgc ccgggacgcc gctcaggaac tgcacaccgc
     3181 gcgcgttgag ctgcttcacc gtgccgatga tgtcgtcggt ggcaagcgcc atgtgctgaa
     3241 caccgggtcc cttgtagaac tcgagatact cgtcgatctg cgacttcttc ttgcccgacg
     3301 cgggctcgtt gatcgggaac ttgatgcgat cgttgccgtt cgccatcacc ttcgacatca
     3361 gcgacgagta ttccgtgctg atcatcttgt cgtcgaacgt gagcagattg cggaagccca
     3421 tcacggtcgc atagaaatcg acccacacgt tcatcttgcc gagctcgacg ttgccgacgc
     3481 agtggtcgac gtacttgagc ccgaccgatc ccggctggta cgcctgcgta accggccgga
     3541 agcccggcat gaacagtccc ttgtagttct ttcgctccac cagcgagtga atcgtctctc
     3601 cgtacgtctt gattgcagcg atgacaatct cgccgttgtc atcacgcatc acacgcggct
     3661 cgtgcaccga ctcggcgccg cgcgcgaccg ccttcgtgta cgcgtcgcgc gcgtcgtcca
     3721 cccagagtgc aaggtcgcgc acaccgtcgc cgtgcttctg aacgtgatcg gagatggtct
     3781 tcgcttcatc gctcaggtca ggccttatcg ccgtcgtaag aacgaaacgg atcttgtcct
     3841 gctgaaggag gtagctggcc ttgtcgcgca cgccggtttc gggacctcga tacgccacca
     3901 cgctgaaccc gaatgcgctc acatagaagt gggccgcctg cttcgcgttc cccacgtaga
     3961 actcgatgta atccgttccg ttgatcggaa acgtatcgcc cgtcgccgtc tgctccggta
     4021 atgtcgctgt tgccatttgg tacctccgtt gtgttacgtg ccgacgctca ttgctagcgc
     4081 ttcctggaag ctccatgcgc ctctgccagc ttccgcgcta tgccacgata gaactgtgca
     4141 tccggaccct tgccctgctc ttccagcgag agagaggcca gttcgagagc gtagaggata
     4201 tttccaagat acagcctggc cagctcacca acgtcggatt cggacacttg ttcgagaggc
     4261 tcttcagcca agcgacccag cccccggatt tggcgtcgga tgcgcccctg tcgccatggc
     4321 tgaagatgaa tgcacccgta ccaccacggc ggtaatgttg tctacccctc cgcgcgcatt
     4381 tgcttccgag atcatggcgt ctacaaggcg gtccggcgtc gcgcgtgagc caagcagttg
     4441 ctgaagacgc cagtcgtcca ccatgccggt cagaccatca ctggcgagca ggaacacgtc
     4501 gccctgacgg acgtcgccgt cggtgatgtc gggctcgacg tcccagccca tgccgacgca
     4561 gcgcgtgatc acgttgctct gcttgtggtt cttggccgcc tcgcgcgtaa tcaggccagc
     4621 gtcgatctgt tcctggacaa cggagtggtc atgcgtgatc tggcgcagct cgccgtcgcg
     4681 gtacagatag atgcgggagt cgccgaggtg gccgatgatg aaacgctcgt cggccagcac
     4741 gagcaccgac gcggtgctcc ccatccccat cttgtcccgc tctgctgcgc tacgctcgaa
     4801 gactgctcgg ttggcgtgcc gcagcgcaag cgataccatc tcgagtgcgt ccgcgctctc
     4861 gaggtccttg agcttctcca ggtctaccga caccacctgg accgccatct ggctcgcgac
     4921 ctcgcccgcc gcgtggccgc ccatgccgtc cgcgactata aaaaggccgc gatactcgtt
     4981 ggcgtccgcg aagaagctat cctcgttccc tttccgaact cgtccgacat ccgagccggc
     5041 ggctaccgca aaatgcacta gaggctcact agaggctcac aagcgtgatc gtttcaaagg
     5101 tgattcttaa atctgcaagc gccagaggcg cgcgtacagg ccatccagcg caagaagtgc
     5161 gtcatgtgtc ccgtgttcca ccacctcgcc atggtgcatc acgataatat cgtctgcatc
     5221 cacgatcgta ctgagacggt gcgcgatggc aattgtcgtc cggccggcca gcagcacccg
     5281 cagggcctgt tgaatctcgg cttccacttc gctgtcgacc gcgctggtcg cctcgtccag
     5341 gatcagcagg gctggatcgg cggccacggc ccgtgcgaac gataacaact ggcgctctcc
     5401 cacgcttatg gaggcgccgc gctcgcccag cacctgatga tagccatttg taaggcgacg
     5461 gatgattctg tcagccccga cctgttccgc agccgcctgg acctgctcat ccgacagggg
     5521 cgcggacagc cgaatgttcg acgcgacgtc gccggcgaag agaaagatgt cctgctgcac
     5581 gtagccgatc agcgcgcgaa gctgctccac cggcatgtcg cgcacgtcct ttccgttgac
     5641 gaggatacgc cccttctgcg ggtcgtagaa tcgcatcagc aggctcacga tcgtcgtctt
     5701 tccggcgccg gtgtgtccaa caatggcgag cgtctgcccg ggtcgcgccg tgaagctgac
     5761 gttgcgaagc acccactcgg gctcgcccgc cacgtttgcc gccgcggagt gcggtctgtc
     5821 atacgcgaac cagacattct ggaattccac caggacggtt cgggggcgct cccttgtcag
     5881 gtgctcatcc ccgcccacgt ccacccacgg ctcggtatcg agcagatgaa atattcgctc
     5941 cgagctggcc atcgcggtct ggagcgtgtt gtacttgtcg gacaggtcct gcagcggctg
     6001 gaagaaccgt cgcacgagct gcagaaaggc cgctacggtc cctaccgtga gcgtagccgc
     6061 ctcgaccctt gccgcaccgg caacgatcag gctggcgagc gcgacggacg tcaggatctc
     6121 gattgccggg aagtacagcg cgtagacggt aatcgagcgc agatgcgcgt ccaggtgact
     6181 cctgttcagc tcgtcgaagc gccgagcctc gtcgtgctct cgcccgaaca attgaacgac
     6241 acgcatcccc gacagccttt cctgaagaaa ggcgttgatc cgggcgagtc gcgtgcgaat
     6301 gtcgcggtac gcctcgcgga cctttacgcg gaacacgtgc gataccagca ccacgagcgg
     6361 gatcacaccg aatgccgcga gcgccagccg ccagtcggtc acgagcatgg caacgctgat
     6421 tgcgagcagc gtgaacagat cgcccattcc gctcaccacg ccagcggtga acaactcgtt
     6481 cagcgtctcg acgtcggacg ttacacgggt gatcaggcgg ccggccgggt tgcggtcgaa
     6541 gaacgcgatc ggcagtcgtt ggagatggct gaataactgg agccgcaggt cgcgcatgac
     6601 attctggccc agcagcgcgg tgaaccacgt ctgcccgtac gacgtcccga gctccacgaa
     6661 cagcgacagc gcatagaggg cgacggcgat tcggatcgca gcgtagtcat gctgcggtat
     6721 cgcgacgtct atgacgcgct gggtcaaaaa cggccccaca agctgcaggg cgccttcgat
     6781 catgaggaag aacagcgcaa tggcgatcag cgctcggtag ggagcggcga aggccagcag
     6841 cctccgcatc aaccggctgt cataagcctt gccgagcgcc tcttcttcgt ggaatgacag
     6901 ggcgggcgcg gtcatgcggc tttcaatcta accgtgcgta attgtggtac gggggttgcc
     6961 atgatgatat gtgtcgtctt tccaccatat cggaggttgt atgagcatca ttgcctggat
     7021 catactcggc ttgctcgcag gtgccatcgc aaaggccatt tcgccgggga ccgacccggg
     7081 cggaataatt gtgacgatga tcatcggaat catcggggcc ttcataggcg gctggatcgg
     7141 cgggttgatc accggggtcg gcctcaccgg cttttcgctc tggagcctcg tgctggccat
     7201 cgtcggtgcc ctgattctcc tctggatcta ccgcataagc gttcgcggcc gtaccaccac
     7261 ggtctagggc gcggatcgct ccgtagggcg ctggttggag gcgacgcgca tgtgcctgcc
     7321 ggccatcctg cgccttacgc gtggttcccg ttagctacgg cctttcttcg cccccaccag
     7381 ctatctttca agggtgaagg atcatctcgt tgtccgcggg gctcggcaac ataacctgaa
     7441 ggggttcgac ctcgagatac cgaggcgaag ctacaccgtc atcacgggac cgtccggctc
     7501 cgggaagtcg tcgctcgcct ttgataccat ctacgcggag gggcagcgcc gctacgtcga
     7561 atcgctgtcc gcctatgcgc gccagttcct cgagcgcatg gaaaagccgg acgtcgattc
     7621 catcgaaggt ctgtcgccgg ctgtcgcgat cgagcagaag aatccgacca agacatcgcg
     7681 gtccaccgtc gggaccgcga ccgagatcta cgattatctg cgattgatgt gggccaggat
     7741 cggacgcact ttctgcccga agtgtggcag agagatgcgg ccggattcgg ttacatcggt
     7801 tacggatacg gtgctgtcgc tcacaccgga cacacggttt gcagtcgcat tcccgctcaa
     7861 gctctccgcg cgcgtcacca cgcctgtcgt gatcgagaat ctgcgcgcgc agggatttct
     7921 gcgcgtgtcg gtcgatggcg ccatcaaatc actggacgag atcggtgcgg acgaggatct
     7981 cacacgtgcg aaggagcttc tcgtcgtcgt cgacagactt tccgtcaagc ccgatgcgag
     8041 cagccgtctt gcggagtcgg tcggcacgtc gtttcgcgag ggtgacggcg acgtcgtgat
     8101 cgtgttcacc gcaccggtgc gctcaccgtt gaatggcgag atggtcacgc ggctcagatt
     8161 caccgatcgc ttcgaatgtg ccaacgacgg cacacgtctg cctgcgccga caccgcagct
     8221 gttctcgttc aacaatccgc gcggtgcatg tccgcgctgc aacgggtttg gcgcgatact
     8281 cgagtacgac gagtcgctcg tggttccata tcccgagcga tcgctgcgcg acggtgcgat
     8341 cgagccgtgg accaagccgc gctacgacaa caagcgcagg acgctcgcgg aattcgcgaa
     8401 gaagaacgga atttcgatgg atacgccgtg ggcggagctg tcgtcggcac agcgcgacat
     8461 gctcctgaac accgaagcgc ggcgcggata cgttggtata ttccccttcc ttcgcgcgct
     8521 ggaagagaag cgctacaagc agtacatacg cgtctttctc aggcaatatc agaccgcgca
     8581 ggaatgcccc gcatgtcatg gcgccaagct gcagcctgaa tcgctgaacg tgctcatcgc
     8641 cgaccgcaac atcgcgcagg tcgccgagct tccgatagac agattgagcg aatggctcga
     8701 gacgctggag ctcagcgact acgagattgc gatcgccgaa atgattcttc gcgaggcgcg
     8761 cgaccgcgtg cgtttcctgc gtgacgtggg gctcgactat ctgacactca atcgctcgac
     8821 gcgcacg
//
LOCUS       DATIMD010000645         3703 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_1730624, whole genome shotgun sequence.
ACCESSION   DATIMD010000645 DATIMD010000000
VERSION     DATIMD010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3703
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1730624"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..570)
                     /locus_tag="VLI40_14400"
     CDS             complement(<1..570)
                     /locus_tag="VLI40_14400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl--tRNA ligase-related protein"
                     /protein_id="HSU98422.1"
                     /translation="MADEKKLPTRAQDFSGWYNELVVRAELADYAPVRGCMVIRPNGY
                     GIWERMQRQLDDMFKETGHRNAYFPLFIPESFLHREAQHVEGFAPETAVVTHGGGKKL
                     EEPLIVRPTSETIIYSMFAKWVQSYRDLPLLINQWANVVRWEMRTRLFLRTLEFLWQE
                     GHTAHATHDEAEEETRRMLGVYRTFMEQWI"
     gene            complement(612..1829)
                     /gene="hisS"
                     /locus_tag="VLI40_14405"
     CDS             complement(612..1829)
                     /gene="hisS"
                     /locus_tag="VLI40_14405"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR00442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HSU98423.1"
                     /translation="MAHTTLPGFRDFYPEQFAERAYVTRAWREVTRRYAFMEYDGPPL
                     ESLELYTAKSGDEIVGQLYNFVDKGGREVALRPEMTPTFARMVSARANSLRKPTRWFS
                     IPQLFRYERQQKGRLREHYQLNVDIVGEAGVAADAELVACAIDICRELHLTSNEVVVR
                     VSDRRVMHAYLAALGIPESAFEAVLGVVDKLARQPRAISAEKLAAAGLDEPQVDAVLD
                     ITRATLDTVAAAIGNTSAPGSEHVEELRRFFQYVGTLVPDGTAWLQFDLSIVRGLAYY
                     TGIVFELFDRSGEFRAICGGGRYDNLLGAIGGAALPALGFGMGDVVLTELLRARKLLP
                     ATEASVDYWLTADEDVPLTKVMAEAAQLRAQGFSVEYALRHQTPSKQRKSATSAGART
                     IIHLTKTATGSHA"
     gene            complement(1925..3232)
                     /locus_tag="VLI40_14410"
     CDS             complement(1925..3232)
                     /locus_tag="VLI40_14410"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HSU98424.1"
                     /translation="MALDLTYRQTIERLFEKTGSRVVPGLERTEKLLDALGDPHRQYP
                     SFHVAGTNGKGSTVATLDALLRFGGRRVGRYTSPHIVDFRERIMIDGVPISEEALLDL
                     LHRIEPLAESLDATFFEITTVAAMLYFAEQKVDVAAIETGLGGALDSTNVLDPVVATV
                     TNISLDHTEYLGSTLQSIADEKGGIFKFGRPAVIGEPRLDLAKRLAERAAERGATPIS
                     IVRSEWRAWSVSLAGGMTSFTAATPLGRTRLSTPLVGEHQVRNTLTALATIHAAGPEY
                     AIRKENINRALSAVSLPARFQRVRDWIFDVAHNAAGARALAETLAARRTPPPVTIVLG
                     VLKDKDWYGMIDALAPVANRFIITNPPSAPPERAWDPLPAAAHANACKVPVSLDIDFG
                     VAMQRAASLPGTKVVCGSFHTVGDAMQVLGIDPAAVPSRGVRD"
     gene            complement(3217..>3703)
                     /locus_tag="VLI40_14415"
     CDS             complement(3217..>3703)
                     /locus_tag="VLI40_14415"
                     /EC_number="2.1.3.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012683245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HSU98425.1"
                     /translation="FMGGSMGSVVGEKIARLGQRSLEKKHPLVIVCASGGARMQEGVL
                     SLMQMAKVSAMLSQLAERRVPYVSLLTNPTTGGVSASFAMLGDAIIAEPGAVIGFAGP
                     RVIKQTIGQDLPEGFQTAEFLLEHGIVDIVVPRHELKPTVGRLLRHMSGKPAATGWLS
                     T"
BASE COUNT          671 a         1239 c         1136 g          657 t
ORIGIN      
        1 gatccactgc tccatgaagg tgcggtagac gccgagcatg cgccgcgtct cctcctccgc
       61 ctcgtcgtgc gtggcgtgcg cggtgtgccc ctcctgccag aggaactcca gggtacggag
      121 gaagaggcgc gtgcgcatct cccaccggac gacgttcgcc cactgattga tgaggagcgg
      181 gaggtcacgg tagctctgca cccacttcgc gaacatcgag tagatgatcg tctccgacgt
      241 ggggcgcacg atgagcggct cctcgagctt cttgccgccg ccgtgcgtca cgaccgcggt
      301 ctctggcgcg aagccttcga catgctgggc ttcgcgatgg aggaagctct cgggaatgaa
      361 gagcggaaag taggcgttgc ggtgacccgt ctccttgaac atgtcatcca gttgacgctg
      421 catgcgctcc cagatgccgt atccgttggg gcggatgacc atgcagccac gcaccggcgc
      481 atagtccgcg agctcggcgc gtacaacgag ctcgttgtac catccgctga agtcctgcgc
      541 gcgagtggga agcttctttt cgtcagccat cgatgcagta ttggatgcag tgtttggtga
      601 ggcgtgcgtt gtcaggcatg agaacctgtc gcagtcttgg tcagatgaat gatcgtgcgc
      661 gcgccggcgg acgtcgcaga cttgcgctgc ttggacggcg tctggtgccg tagcgcgtac
      721 tccacggaaa agccctgcgc tctgagctgc gccgcttccg ccatgacttt cgtcaacgga
      781 acgtcctcgt cggccgtgag ccagtaatcg accgatgctt ccgtcgccgg aagcagtttg
      841 cgcgcacgca gcagctcggt gagcacgacg tcgcccattc cgaagccgag cgccggaagc
      901 gccgcgccgc cgattgcacc gagcaggttg tcataacgac cgccgccgca gatcgcgcga
      961 aactcaccgg aacggtcgaa caattcgaaa acgatgccgg tgtaatatgc gagcccgcga
     1021 acgatcgaca gatcgaattg cagccacgcg gttccatccg gaacgagagt gccgacgtac
     1081 tgaaagaacc tgcgcagttc ctcgacatgc tcgctgccag gcgcggatgt gttgccgatc
     1141 gcggcggcaa ccgtatcgag tgttgcgcgt gtgatgtcga gtaccgcgtc cacttgcggc
     1201 tcgtccagcc ccgccgcagc cagcttctcc gccgagatcg cgcgcggctg ccgcgcaagc
     1261 ttgtccacaa caccaagcac cgcctcgaac gcactttccg gaataccgag cgcggcgaga
     1321 taggcatgca tcacgcgccg gtcgctcaca cgcacgacga cttcgttcga cgtgaggtgc
     1381 agctccctgc agatatcgat cgcgcacgcg accagttccg catccgccgc aactccggcc
     1441 tcgccgacga tgtcgacgtt cagttggtag tgctcgcgaa gccggccctt ctgctggcgc
     1501 tcgtacctga acagctgcgg aatcgagaac cagcgcgtcg gcttgcgcag cgaatttgcg
     1561 cgagcgctca ccatgcgcgc gaacgtcgga gtcatctccg gacgcagcgc gacctctcga
     1621 ccacccttgt cgacgaaatt gtatagctgg ccgacgatct cgtcgccgct cttggccgtg
     1681 tacagctcca gcgattcgag cggcggccca tcgtattcca tgaatgcgta gcggcgcgta
     1741 acctcacgcc acgctcgggt cacgtacgcg cgctcggcaa actgctcagg gtagaaatct
     1801 ctgaaccccg gtagtgttgt gtgcgccatc gtccaaacct attcggtcgg agaggcgcgg
     1861 gctaccaccg gagccccgca gttgcctgcg ccgcccggcg agatcgcccg acgacgcact
     1921 tcgatcagtc acgcacgcca cgcgaaggca cggctgcggg atcgatcccg agcacctgca
     1981 tggcgtcgcc caccgtgtgg aatgatccgc agaccacctt ggtcccgggc aacgacgcag
     2041 cacgctgcat cgcgacgcca aagtcgatgt cgagcgagac aggaaccttg caggcgttgg
     2101 cgtgcgcggc agccggcaac gggtcccacg cacgctccgg tggtgcgctc ggcggattgg
     2161 tgattatgaa acgattcgca accggcgcca gcgcgtcgat catgccgtac cagtccttgt
     2221 ccttgagcac accaaggaca atcgtgacgg gaggcggcgt ccgacgggcc gcgagcgtct
     2281 ccgccagcgc acgagcgcca gcggcattgt gtgccacatc gaagatccag tctcgaaccc
     2341 gctgaaaccg cgccggcaga cttacggcag agagagcgcg attgatgttc tccttccgga
     2401 tcgcgtactc gggcccggcg gcatggatcg tcgcgagcgc cgtcagcgtg ttgcggacct
     2461 ggtgctcgcc caccagcggc gtcgaaagcc gggtgcgtcc gagcggcgtc gcggcggtga
     2521 acgatgtcat gccgccagcc agcgagactg accacgcacg ccattccgac cgcacgatcg
     2581 atataggagt cgcgccacgc tccgcggctc gctcagcgag cctcttggcc agatccagcc
     2641 gcggttcgcc gatcaccgcg ggccgcccga acttgaagat cccgcccttc tcgtccgcga
     2701 tcgactgcag ggtggatccc agatactcgg tgtggtccag cgagatgttg gtgacagtcg
     2761 ccaccaccgg gtcgagcacg ttggtgctgt ccagcgcgcc tcccagtccc gtctcgatcg
     2821 ccgcgacgtc gaccttctgc tccgcgaagt acagcatcgc cgcgacggtc gtgatctcga
     2881 aaaaagtcgc gtccagcgac tcggcaagcg gctcgatccg gtgcagcaaa tcgagcagcg
     2941 cctcttcgga gatcgggacg ccgtcgatca ttatgcgctc gcgaaagtca acgatgtgcg
     3001 gcgacgtata ccgtcccacg cgtcgcccgc caaaccgcag gagggcatcg agcgttgcga
     3061 ccgtgctccc ttttccgttc gtgcctgcga cgtgaaacga gggatactgc cggtgcggat
     3121 cgccaagcgc gtcgagcagc ttttccgtcc gctccagccc gggaactacc cgcgatccag
     3181 ttttttcgaa cagtcgttcg atcgtctgcc ggtaggtcag gtcgagagcc atccagtcgc
     3241 cgccggcttg ccactcatgt gtcgcaatag ccgaccgacg gtcggcttca gctcatgccg
     3301 cggtaccacg atatccacga tcccgtgctc cagcaggaat tcggcggtct gaaatccctc
     3361 gggcaggtct tggcctatcg tctgcttgat cacgcgcggg ccggcgaatc ctatcacggc
     3421 ccccggctcg gcgattatcg catcaccgag catggcgaag ctcgcgctca caccgccggt
     3481 agttgggttg gtcagcaacg acacgtaagg gacgcgccgc tccgcaagct gtgaaagcat
     3541 cgccgatacc ttggccatct gcatcagcga cagaactccc tcctgcattc gcgcgccgcc
     3601 ggacgcgcag acgatcacca gcgggtgctt cttctccagc gatcgctggc ccaagcgagc
     3661 gatcttctca cccactacag agcccatcga gccacccatg aat
//
LOCUS       DATIMD010000646         2137 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2593290, whole genome shotgun sequence.
ACCESSION   DATIMD010000646 DATIMD010000000
VERSION     DATIMD010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2593290"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..506)
                     /gene="arfB"
                     /locus_tag="VLI40_14420"
     CDS             complement(45..506)
                     /gene="arfB"
                     /locus_tag="VLI40_14420"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: protein motif:HMM:NF006718.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue aminoacyl-tRNA
                     hydrolase ArfB"
                     /protein_id="HSU98426.1"
                     /translation="MATRSSAADGEDERAIRVNDRLAIPRAELGVRATRASGAGGQHV
                     NKTSTRVEITWNVSSSQVLSDEDRARLVTRLASRLSDDGELRVVASDTRSQLQNRELA
                     ETRLAEIVRRALVIPKARRKTRPSRAAKQARLNDKRKLSEKKRVRRSNVDD"
     gene            complement(481..1452)
                     /locus_tag="VLI40_14425"
     CDS             complement(481..1452)
                     /locus_tag="VLI40_14425"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YpdA family putative bacillithiol disulfide
                     reductase"
                     /protein_id="HSU98427.1"
                     /translation="MQKNHFEDTVIAGGGPIGLACAISARKCGIDPLIIEAGAIADSI
                     VRYPIGMGFFTTPELLEIGGHPFVSVGQKPTREEALKYYRGVARAEKLRVKTYTKLVT
                     AQRVGDTIRCTVATANGENTIDCKRLVLATGYFGEPNLMDVPGESLPFVHHYFDEPHR
                     SFGLDVVVIGGRNSAVEAALELFRAGARVTLVYRGTVFPASVKYWVKPDIENRIAAGE
                     ISARLGATVLRIEQGAVIIRNAEGMEETLHADRVYALTGFRADFALFRRIGIELEPDT
                     ERASVNPDTLETNVPGIYMAGSIVAGRYTSGIFIENGRFDGDKIFRC"
     gene            1675..>2137
                     /locus_tag="VLI40_14430"
     CDS             1675..>2137
                     /locus_tag="VLI40_14430"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSU98428.1"
                     /translation="MNVSKARVLVTGGSSGIGKATALALAELGARVAICGRDRASIEK
                     AAGEIGATPFVADVSREADVLALIPKVIEALGGYDALINNAGFGRFAPLVETTVDDMR
                     AVWETNVLGATLAARESAKHFIKQSYGNIVNVASTSAAHGSANGSAYSSSKF"
BASE COUNT          411 a          673 c          643 g          410 t
ORIGIN      
        1 tgcttgatca caatccggga taactcggga taactcaggt acgatcagtc gtcgacattg
       61 ctacgccgca cgcgcttctt ctcggaaagc ttgcgcttgt cattgagccg cgcctgcttc
      121 gctgcgcggc tcggccgcgt cttcctgcgt gccttgggga tgacgagcgc gcgccgcacg
      181 atctcggcaa gacgcgtttc ggccagctcg cgattctgaa gctgactgcg cgtatcgctc
      241 gccaccacgc ggagctcgcc atcatcgctc aaacgcgagg ccaggcgcgt gacgaggcgc
      301 gcacgatctt catcgctcaa cacctgcgac gacgagacgt tccaggtgat ctcgacgcgc
      361 gtcgacgtct tgttgacatg ctgcccgccg gcgccggatg cgcgggtcgc gcgcactccg
      421 agctcggcgc gcgggatcgc gagcctgtcg ttcacgcgta tcgcgcgctc gtcctcgccg
      481 tcagcagcgg aagatcttgt cgccatcgaa gcggccgttc tcgatgaata tgccggacgt
      541 gtagcggccg gcaacaatgc tgccagccat gtatatgccc ggcacgttcg tctccagcgt
      601 atcgggattc accgatgcgc gctcggtatc aggctcgagc tcgatcccga ttcgtcgaaa
      661 cagtgcgaag tccgcgcgga atcccgtaag agcgtacacg cgatccgcat gcagcgtctc
      721 ctccattccc tcggcgttgc gtatgatcac cgcgccctgc tcgatccgca acaccgttgc
      781 gccgagccgc gcggagatct cgccagcggc gatgcggttt tcgatgtcgg gcttgaccca
      841 gtacttgacg ctcgctggaa acaccgtacc acgatagaca agcgtaacgc gggcaccggc
      901 gcgaaacagc tccagcgcag cctcgactgc agagttgcgc ccgccaatca ccacgacgtc
      961 gagtccgaag ctgcggtgcg gctcgtcgaa atagtggtgc acaaatggaa gcgactcgcc
     1021 gggcacgtcc atcagattcg gctcaccgaa atatcccgtc gcgagcacga gacgcttgca
     1081 gtcgatggtg ttttcaccgt tcgcggtcgc gacggtgcat ctgatggtat caccaacgcg
     1141 ctgcgcggtt acgagtttcg tgtaagtctt cacgcgcagc ttctcggcgc gcgcgacacc
     1201 gcgatagtac ttgagtgctt cttcacgcgt gggcttctga cccacggaga cgaacggatg
     1261 gccaccaatc tccagcagct ccggagtggt gaaaaatccc atgccaatcg ggtagcgcac
     1321 aatcgaatcg gctatggcgc cggcttcgat tatgagcgga tcgatgccgc attttctggc
     1381 cgagatcgcg caggcaagcc cgatcggacc gccgcccgcg attacggtat cttcaaaatg
     1441 gttcttctgc atgtggagtc gagtgagagc acctgacaaa accatcgttc gcgccggaaa
     1501 ccgcacgacc gatggttttg tcagccgtta ttagctacat ccgtgccgga tctcagggtg
     1561 catacacgac cggccatcca taaacttaca atggtgtcac atgctgaccg ccgcaatcgg
     1621 ctggcagcac ttccatgatg aatttttcca cctatcgata aagagaggcc gacaatgaat
     1681 gtttccaagg cacgggtgct cgtcaccggc ggttcgagcg gcatcggaaa ggcaacggcg
     1741 ctggcgctgg ccgagcttgg cgcgagagtc gccatctgcg gacgagatcg cgcgagcatc
     1801 gagaaggctg ccggtgagat cggtgccacg ccattcgtcg cggacgtcag ccgggaagcc
     1861 gatgtccttg cgctcatacc gaaggtgatc gaggcgctcg gtggctacga cgcgctcatc
     1921 aacaacgccg gattcggtcg ttttgcgccg ctggtcgaga caactgtcga cgacatgcga
     1981 gcggtatggg agacgaacgt gctcggcgcg accctcgccg cacgtgagtc ggcaaagcat
     2041 ttcatcaagc agtcgtacgg caacatcgtg aacgtcgcat cgacatcggc ggcgcacggc
     2101 tcggcgaacg ggtcggccta ctcctcgtcc aagttcg
//
LOCUS       DATIMD010000647         4376 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2595015, whole genome shotgun sequence.
ACCESSION   DATIMD010000647 DATIMD010000000
VERSION     DATIMD010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 4376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4376
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2595015"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..479
                     /locus_tag="VLI40_14435"
     CDS             <1..479
                     /locus_tag="VLI40_14435"
                     /inference="COORDINATES: protein motif:HMM:NF016221.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HSU98429.1"
                     /translation="CRHSPTAARRMSASALRLVVLALIAPAFVACHREAPISATTFEL
                     HDAWVRATPDSGSTTAAYIRFVNGTRDTVWVSRFSSDDAAEVELHQSSDISGEMHMAM
                     FDSLAVAPDHSVTMRPGGYHLMLIGTTHALVPGTMVRIVMHLSNGAVVSTSARVRS"
     gene            complement(519..2429)
                     /locus_tag="VLI40_14440"
     CDS             complement(519..2429)
                     /locus_tag="VLI40_14440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012682012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HSU98430.1"
                     /translation="MSAPAISERPPVEEPTGRRLGKLSLLALGVVFGDIGTSPLYAFR
                     ESFRAEYGLARTPDNVYGVVSLILWALILTVSIKYIVFIMRADNRGEGGILALLALIL
                     QQRERLSKRWRVTLIMTGLIGAALLYGDGVITPAITVLSAVEGLEVVTPTLSHLVVPL
                     SVIILVLLFLVQKHGTANIGWVFGPLMLLWFGAIGALGAYSIVQHPHILLAISPVYGL
                     QLFLNDGRTAFLLLGAVVLAVTGTEALYADMGHFGRRSIRIAWFALVLPSLALNYFGQ
                     GAIVLENPPSVENPFFALAPHALLYPLIALATVAAVIASQALITGAFSLTHQCVQLGY
                     SPRFNVIHTSGEEAGQIYVPEVNHALMIGCVIMVLGFGSSAALSAAYGIAVTGTMVIT
                     TLLFTQLAQMKWNWKPWQYISFAAVFLIIDLGFAASNMVKIESGGWVPLAIAGAIFTL
                     MTTWHSGRRITRSLLRNASLPLDALLRSLAETHVVRVPGTAVFMTADSSGAPMVLLHH
                     LKHNKVLHEEVILLTIQVKEIPEVTDGERMSVTKLPLGFWRVVAQYGFMETPDAQRLL
                     ASARAFGLRAQRMETTYYLGREQLLPIGSTKLARWRKKLYAFMARNSLPATAFFGLPP
                     NRVVELGAQLEI"
     gene            2802..4283
                     /locus_tag="VLI40_14445"
     CDS             2802..4283
                     /locus_tag="VLI40_14445"
                     /inference="COORDINATES: protein motif:HMM:NF025067.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4173 domain-containing protein"
                     /protein_id="HSU98431.1"
                     /translation="MRLGFLWLLAAIAGTLGALVLYDAQPGINWAIWTVVTLAGLLAY
                     RRPDRKTLRTIALPLAFAVVLSIGAAVTTTEILLVAIVAIVASLMALAVLLANEQGAE
                     LDYGPVNIITAPIRAFLATARGAVSSVFLGVESLGSARERPALRGSLIAAPVVLVLVL
                     LFADADPLLARGRDAVYSMFTNWSALPQVVFGVLLALFVAGAYAATRATRPVSVPTLL
                     PTDSAARVGLTERRIVLGAAAAVSWLFVLLQLSYLFGASPAIAGSGVTFAEYAHRGFG
                     ELTVAATIAALLIIAAHDNVRTDADRHARNAITWPALALLAAVVCILMSAFHRIMLYE
                     GAYGYTTPRVYGQAYMLLALAVLLVLAWHVWRSFDVRALARQIMTVALATLTFLVFWN
                     GDAWVAQANLDRYARTGKIDVQYLTRDLSLDAYPTLVQALPSIRQPERAQLATALSGE
                     YVRHHSLREQPAWYEWNVRRERARSLVVIRPPANTPANTPAPL"
BASE COUNT          812 a         1373 c         1362 g          829 t
ORIGIN      
        1 attgccgaca ttcgccaact gctgcgcggc gcatgagcgc atcagctctg cgcctggtcg
       61 tgctggcgtt gatcgctcct gcattcgtcg catgtcatcg cgaagcgccg atctccgcca
      121 cgacattcga gcttcacgat gcgtgggtcc gcgcaacgcc ggattcggga tcgacgacgg
      181 ccgcctacat ccggttcgtc aacgggacca gggatacggt ctgggtttcg cgcttctcat
      241 cggatgacgc agccgaggtc gagctgcatc aatcgtccga catctccggc gagatgcaca
      301 tggcgatgtt cgattccctt gctgtagcgc cggatcacag cgtgacgatg cgtcccggcg
      361 gctaccacct gatgctgata gggacgaccc acgcactggt accgggcacc atggtgcgaa
      421 tcgtgatgca tctgtcgaac ggcgccgtgg tttcgacctc cgcacgagta agatcctgac
      481 ggatcactgg aatttcacgg gcccgtcagg accgtcggtc agatttccag ctgcgccccg
      541 agctcgacca cgcgattcgg cggcaatcca aagaacgccg tggccggcag tgaatttcgc
      601 gccatgaatg cgtacagttt cttgcgccac cgggcgagct tcgtgcttcc gattggaagc
      661 aactgctcgc gaccgagata gtatgtagtc tccatgcgct gcgcccgcag cccgaatgcg
      721 cgcgcagagg caagcagccg ctgcgcgtcc ggcgtttcca tgaagccgta ttgcgcgacg
      781 acacgccaga agccaagtgg gagcttggtg accgacatgc gctcgccgtc ggtcacttca
      841 gggatttcct tcacctgtat cgtgagcagg atgacctctt cgtgcagcac cttgttgtgc
      901 ttgaggtggt gcaacagaac cattggtgcg ccgctcgaat ccgcggtcat gaacaccgcc
      961 gtgcccggga ctcgcaccac gtgcgtctcc gccaggctcc gcaatagcgc atcgagcgga
     1021 agactcgcgt tacgcagcag cgagcgcgtg attctgcgac cggaatgcca cgtcgtcatc
     1081 agcgtgaaga tcgcacccgc gatcgcgagc ggtacccagc cgccggattc gatcttcacc
     1141 atgttggagg ccgcgaatcc gagatcgatg atcaggaaga ccgccgcgaa tgagatgtac
     1201 tgccacggtt tccagttcca cttcatctgc gccagctgag tgaacagcag cgtcgtgatc
     1261 accatcgtgc cggtcaccgc gataccgtac gccgcgctga gtgcagcgga cgacccgaag
     1321 cccagcacca tgatgacgca accgatcatg agggcgtgat tcacttccgg cacatatatc
     1381 tggccggctt cctcgcccga tgtatggatc acgttgaagc gcggactgta accgagctgc
     1441 acgcactggt gcgtcaggga gaatgcgccc gttatgagcg cctgcgatgc gatgacagcg
     1501 gcgacggtgg cgagcgcgat cagcggatac agcaacgcat gcggtgcgag cgcgaaaaac
     1561 ggattctcga cgctcggcgg gttttccagt acgatggctc cctggccgaa atagttgagc
     1621 gcgagcgacg gaagcaccag cgcgaaccat gctatgcgga tcgagcgccg tccgaagtgt
     1681 cccatgtcgg cgtagagcgc ctccgttccc gtgacggcga ggacgacggc gccaagcaga
     1741 aggaatgcag tgcgcccgtc gttcagaaac agctgcagac cgtagaccgg acttatcgca
     1801 agtagaatgt gcggatgttg cacgatcgag tatgcgccga gcgcgccgat cgcgccgaac
     1861 cagagcagca tcaacgggcc gaagacccat ccgatgttgg ccgttccgtg tttctggacc
     1921 agaaacagca ggacgagaat gattaccgac agcggcacga cgagatgact cagcgtcggt
     1981 gtcactactt cgagaccctc gactgcgctc agcacggtga tcgcaggagt gatcacaccg
     2041 tcgccgtaga gcagggcagc gccgatcagg ccggtcatga tgagagtgac gcgccatcgt
     2101 ttcgataatc gctcacgctg ctgcaggatg agcgcgagca gtgcgagaat gccgccctcg
     2161 ccgcggttat cggcacgcat gatgaaaacg atgtacttga tgctgaccgt aaggatcagc
     2221 gcccacaata tcagcgacac gacgccgtac acgttgtccg gagttcgggc gaggccgtac
     2281 tctgcccgga acgattcgcg gaatgcgtac agcgggctcg tcccgatgtc gccgaacacg
     2341 acgccgagcg cgagcaggga gagcttgccg agtctgcggc cagtcggctc ttcgaccggt
     2401 ggccgttccg agattgccgg ggccgacatc aggctgtgac ccaaatggcc agccttcggc
     2461 caacgaatat aggtatagct cgcgtgagcg aagagtacat aactaactga aaggaagccg
     2521 gcgactctgc cggccgtcgt cgcattggca accgccagcg caaccggaga aacttatagc
     2581 aaggggccgg ccgattggcg gtcccgggcg aatcgggtgc aacctactca gtttcggcac
     2641 gaggagacgt ccggatctac cgcacggcct ttgcgatgca aagtacttga ctgtttcatg
     2701 gactctgcta gaattctccg gagacggccg gcacagaccg cggtcggaca cgtcgtcgaa
     2761 cgctgccggt acctgggcgg tcacccatca caacccgcgt tatgagactc ggatttctct
     2821 ggttactcgc cgcgattgcc ggtacgctcg gcgccctcgt gctctacgat gcgcagcccg
     2881 gaatcaactg ggcgatctgg accgtcgtga cacttgcagg gcttcttgct tatcgtcgcc
     2941 cggatagaaa gacgctccgg accatcgcgc tcccgctcgc cttcgccgtc gttctctcca
     3001 tcggcgccgc ggtcaccacc accgagatcc tgctggttgc gatagttgcg atcgtcgcgt
     3061 cgctgatggc cctcgccgtt cttctggcga acgagcaggg agcggagctc gactacgggc
     3121 cggtcaacat cattaccgcg ccgattcgcg ccttcctggc caccgcccgc ggggcagttt
     3181 cgtccgtctt cctcggcgtc gaatcgcttg gctccgcacg agaacgtcct gcgctgcgcg
     3241 gcagcctgat cgccgcgcca gtggtgctcg tgctcgttct cctgttcgcg gatgccgacc
     3301 cgcttctcgc gcgaggccgc gacgcggtgt acagcatgtt caccaactgg agcgcactgc
     3361 cgcaggttgt gttcggcgtg ctgctcgcgt tgttcgtggc cggagcgtat gcggcgacgc
     3421 gtgcgacgcg cccggtttcc gtcccgactc tgctaccgac cgacagcgct gcgcgagttg
     3481 gattgaccga gcggcgcata gtgctcggtg ccgccgctgc ggtgtcgtgg ctgttcgtcc
     3541 tcctgcagct cagttatctc tttggagcct cgcccgcgat cgcgggatcc ggtgtgacct
     3601 tcgcggagta cgcgcaccgc ggctttggtg aactgaccgt cgctgcgacg atcgccgcgc
     3661 tgctgatcat cgccgcgcac gacaatgtgc gcactgacgc cgatcggcac gcgcgaaatg
     3721 cgattacgtg gccagcgttg gcattgctgg cggcggtcgt gtgcattctc atgtcggcgt
     3781 tccatcgcat catgctctac gaaggtgcgt acggctacac gactccgcgc gtgtacggcc
     3841 aggcgtacat gctgcttgcg cttgcggtgc tgctcgtgct cgcgtggcac gtatggagga
     3901 gcttcgatgt gcgcgcgctc gcgcgccaga tcatgactgt cgcgctcgca acactgacgt
     3961 ttctcgtctt ctggaacggc gacgcgtggg tcgcgcaggc gaacctcgac cgatacgcac
     4021 gcacgggcaa gatcgacgtt cagtatctga ctcgcgatct gtcgctcgac gcgtatccca
     4081 cgctggtgca ggcgctgccg agtatcaggc aaccggagcg cgcgcagctt gcgaccgcgc
     4141 tctcgggaga atacgtgcgt caccactcgc tgcgtgaaca gccagcctgg tacgagtgga
     4201 acgtgcgacg agagcgcgca cgaagccttg tcgtgatcag acctcccgcg aatacgcccg
     4261 cgaatactcc cgcgccgttg tagttttcgg tctggaggag ttgagatgac agaccagaca
     4321 gctgagcaac cgcccgaaac actcgaggga tggtatgttc tgcatcagat atacag
//
LOCUS       DATIMD010000648         5746 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_863485, whole genome shotgun sequence.
ACCESSION   DATIMD010000648 DATIMD010000000
VERSION     DATIMD010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 5746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5746
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_863485"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3306)
                     /locus_tag="VLI40_14450"
     CDS             complement(<1..3306)
                     /locus_tag="VLI40_14450"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98432.1"
                     /translation="MKRGRLTVTLISGASLLLAGLITIAAVPPRPITPVPVKSDLLAG
                     LVWRNLGPFRGGRVSAVSGAIGEPGVFYAGYPLGGVWKTSNDGHTWFPIFDSIKEASS
                     VGAIEVAPSDTNVIYVGMGDMITGGGINEGNGVYKSTDAGKTWTHLGLDATKQIPSII
                     VDPHDPNTVMIAAQGNIHAKSDMRGVFRSTDGGRTWTKTLYVDDSTGIQKLARAYDQP
                     NVILATTVRHYIAPGIPTVSTPRPTGGTALYKSTDDGLTWKEIKGGGLPALSGRTSVA
                     IAMHTNAQRMYLIENSGLYRSDDGGTSWRQMDSTDKRIANGQGGYNCGVYVNSANPDI
                     VYTVSTSSYISTDGGNTFTGFKGAPGGDDPQQMWVDPTNGQRLFFGEDQGATVSLDGG
                     RTWSPWYNQSTEQVYHISTDNSYPYWVYATQQDAGAVRTLSRGNLGEITSLDWSPVPG
                     WEWGTIVPDPLNPKIVYSSGSGIVKISYPSEQWINVSPAADPNTETRTTSSQPIMFSP
                     LNQHELVAGFQYVASTTDGGVTWKRLSPDLTYPKGETPPPEHAPAPAAGARGAAPNRS
                     AIESMSVSGAAAGMIWVGTNNGLIKLTRNHGATWEDVSIANLPNSARADISGIDASHQ
                     DPATAYVAVDFHTIGDYAPYFYRTHDYGKTWTRIVNGMETNQSNGSFARVIRSDPKKP
                     GLLFAGTESSIYVSFDDGNNWQSLMLNLPNTSYRDITFNGNDLIAGTYGRGIWVLDDY
                     AVLRQVTPAIAAEPVHFFKPDETVRVRRNVNADTPFPPEVPHALNPPDGVVFYYSLAS
                     KPSSPVTLEVVDASGNVIRHMSSIPDKPVKEAAEPPEPNFWIAPPESLTANAGTNRGN
                     WDLRHDAPPAFTHSYEINANPGLTPASPEGPMAPPGVYTLRLNVDGKTYTQTVTVRND
                     PRSPATVAAVKAQHDLLMKLDAGARESWDGYNQVQTMRTAVAALSSANPPAEAAAALK
                     AFDARLEAVAGSTTGGRGGFQRGGPPPPPDFVRVNGVMGRELTALDNGDMAPTAATLR
                     GYAADCAQLATVLKNWQAVTTKDLPALNATLAKSNITPVRAATASLPIPACGAGLSAH
                     DKRTVETHTGTTVS"
     gene            complement(3524..4177)
                     /gene="mscL"
                     /locus_tag="VLI40_14455"
     CDS             complement(3524..4177)
                     /gene="mscL"
                     /locus_tag="VLI40_14455"
                     /inference="COORDINATES: protein motif:HMM:NF013869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HSU98433.1"
                     /translation="MFSSGRQGWKAALHARHDQDDHGHVTAFHMLMGQTYSPSADRTD
                     TRWRTPRWRVSFFESVHLIAGDLPMWSDFKAFIMRGNVLDLAVAVVIGAAFGVVVKSL
                     VDDVIMPPIGLLLGHVDFSNLYVLLKDGVKAAPPYASLADAKAAGAVTLNYGLFVNNI
                     ITFLIVALAIFIVVRSANKVYKKPAPTATTKPCPYCATDIPIAATRCPHCTSDLKAA"
     gene            complement(4102..4983)
                     /locus_tag="VLI40_14460"
     CDS             complement(4102..4983)
                     /locus_tag="VLI40_14460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98434.1"
                     /translation="MRTRLAVAGSFVFIIAACTPKESSSVAKTDSTTAATVATAASTA
                     AAPNIVTVHAKDFSYPDAPAEIPAGLTTFKLINDGADLHHLDIIRLDSGKTLKDLETA
                     LALPAAPPMWAVPMGGPNAPDPTKESNATLDLTPGNYAMICFVDVPGGVPHFAKGMIK
                     AFTVGAAPAGAPAAAPVADVDIKLVDYGFDLSKPLTAGTHTFAVTNGASQPHEVELVR
                     LAPGKTVEQLLGWMNKPAGPPPGSAIGGVAGFIGDTNYFTADITPGQYALICFLPDVK
                     DGKPHFMHGMTKTITVM"
     gene            complement(5108..>5746)
                     /locus_tag="VLI40_14465"
     CDS             complement(5108..>5746)
                     /locus_tag="VLI40_14465"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSU98435.1"
                     /translation="LGLYHPLEGRILYNGTSGTEVELDALRTRIGLVAQDAQLFSGTI
                     AENLRFVRPDATDADCMRVLHEAAADSLLARADNGLDTMIGEGGVKVSGGERQRLAIA
                     RALLRRPSLLIFDEATSALDSITEEEVSRTIRDVATRRETIAILIAHRLSTIMHADTI
                     YVLERGRIVESGSHAELLEQKGLYHAMWRQQVGERRWPGAVSPPHLQPALVT"
BASE COUNT         1036 a         1678 c         1833 g         1199 t
ORIGIN      
        1 agacaccgta gtgcccgtgt gggtttccac cgttcgtttg tcgtgcgccg agaggccggc
       61 accgcaggcc gggattggca gcgacgcagt agccgcgcgc acgggtgtga tgttgctttt
      121 cgccagtgtg gcgttgagcg caggaaggtc cttcgtagtg actgcctgcc aatttttgag
      181 gaccgtcgcg agctgagcgc agtctgcggc gtagccgcga agagtcgcgg cggtgggtgc
      241 catgtcgccg ttgtccaacg cagtcagctc gcgtcccata actccgttca cgcgaacgaa
      301 gtccggcggt ggcggtggtc caccgcgctg aaagccacca cggccgccag tcgtcgatcc
      361 ggctacagcc tcgagcctcg catcgaatgc ctttagcgcc gcggcggctt cggccggcgg
      421 attcgcgctg gagagcgcgg caactgccgt gcgcatcgtc tggacctggt tgtaaccatc
      481 ccaggattcc ctggcgccag catccagctt catcagcagg tcgtgctgcg ccttcaccgc
      541 cgcgacagtg gccggtgacc gcggatcatt tctgacggtg acggtttgcg tgtacgtttt
      601 tccgtccaca ttcagcctga gcgtgtagac gcctggcggt gccatcggtc cttccggcga
      661 tgccggcgtg agacccgggt tagcgttgat ttcgtagctg tgcgtgaacg caggcggtgc
      721 gtcgtggcgc aggtcccagt tgccgcgatt ggttcctgcg ttggccgtca acgactctgg
      781 cggcgcgatc cagaagttgg gctctggcgg ctccgcggct tccttcaccg gcttgtccgg
      841 aatactcgac atgtggcgta tcacgttgcc tgatgcgtcc acaacttcga gcgtgacggg
      901 cgacgacggc ttcgatgcga gcgaatagta gaatacgacg ccatcgggtg gattgagcgc
      961 gtgcggtact tcgggcggaa acggagtgtc cgcattcacg ttgcgacgaa cgcgaaccgt
     1021 ctcgtccggc ttgaagaagt gtaccggttc cgcggcgatc gccggtgtca cctggcgcag
     1081 caccgcgtag tcgtcgagca cccaaatgcc gcggccgtag gttcccgcga tgagatcgtt
     1141 gccattgaac gtaatgtcgc gatacgacgt attcggcaga ttcaacatca gcgactgcca
     1201 gttgttgcca tcgtcgaacg acacgtagat cgagctttcg gtgcctgcga agagaaggcc
     1261 aggctttttt ggatcgctgc gaattacgcg cgcgaagctg ccgttggact ggttcgtctc
     1321 cattccgttg acgattcgcg tccacgtctt gccgtagtcg tgagtgcgat agaaatacgg
     1381 tgcatagtcg ccgatcgtat ggaagtccac cgctacatat gcggtcgcgg gatcctggtg
     1441 tgacgcgtcg attcctgaaa tatctgcgcg cgcactgttc ggaagattcg cgatgctgac
     1501 gtcttcccac gttgcgccgt gatttctcgt gagcttgatg agaccgttgt tcgtaccaac
     1561 ccagatcatg ccggcggcag ctccggaaac cgacatcgat tcgatcgcgc tccggttggg
     1621 tgcggcaccg cgtgctccag cggcaggcgc gggtgcgtgc tccggtggag gcgtctcgcc
     1681 cttggggtag gtgagatcgg ggctcaaccg cttccatgta actccgccgt ccgtcgtcga
     1741 agcgacgtac tggaacccgg cgacaagctc gtgctgattc aacggcgaga acatgatggg
     1801 ctgcgacgaa gtcgtacgcg tttcggtgtt cgggtcggca gcgggactca cgttgatcca
     1861 ctgctcgctc ggatagctga tcttgacgat gcccgatccg ctcgagtaga cgatcttcgg
     1921 attgagagga tcgggaacga tggtgcccca ttcccagcca gggacggggc tccagtcgag
     1981 actggtgatc tcgccgaggt tgccgcgcga cagcgtgcga acggcgccgg catcctgctg
     2041 cgtcgcgtat acccagtacg gatatgaatt gtcagtggag atgtggtaga cctgctcggt
     2101 cgactgattg taccacgggc tccacgtgcg accgccgtcg agtgacacgg ttgcgccctg
     2161 atcctcgccg aagaacaggc gttgaccatt ggttggatcg acccacatct gctgtggatc
     2221 atcgccaccc ggtgcaccct tgaaaccggt gaacgtgttg ccgccgtcgg tcgagatata
     2281 gctcgatgtg ctgaccgtgt agacgatgtc gggattcgcc gagttgacat acacgccgca
     2341 gttgtagccg ccctgaccgt tggcgatacg cttgtccgtc gaatccatct gacgccagct
     2401 cgtgccgcca tcgtcggagc gatacaggcc tgagttctcg atgagataca tgcgctgcgc
     2461 gttcgtgtgc attgcgatcg cgacggaggt gcggccagac agcgcaggga gtccgccgcc
     2521 cttgatctcc ttccatgtca gcccatcatc ggtcgacttg tacagcgccg tgccgcctgt
     2581 cgggcgcggt gtgctcacgg tcggtatccc gggagcgatg tagtgtcgaa ccgtggttgc
     2641 gagtatgacg ttcggctgat cgtatgcgcg agccagtttc tggatgccgg tcgagtcgtc
     2701 gacgtacagt gtcttcgtcc acgttctgcc accgtcggtg ctgcggaata cgccgcgcat
     2761 gtcggacttg gcgtggatgt ttccctgcgc cgcgatcatc accgtgttgg gatcgtgcgg
     2821 atcgacgatg atggatggaa tctgtttcgt ggcatcgagt ccgaggtgcg tccaggtctt
     2881 gccagcgtcg gtcgacttgt agacgccatt gccttcattg attccgccgc cggtgatcat
     2941 gtcgcccatt ccgacgtata tcacgttggt gtcggacggt gcgacctcga ttgcgccgac
     3001 cgacgaggct tccttgatcg agtcgaagat cgggaaccag gtatggccgt cgttgctggt
     3061 tttccagacg ccgcccagtg ggtagccggc gtagaacacg cccggctcgc cgatcgcgcc
     3121 ggagacggcg gagacgcggc cgccgcggaa cgggccgagg tttcgccaga ccagaccggc
     3181 gaggagatca gattttaccg gtaccggcgt gatgggacgc ggaggaaccg cggcgatggt
     3241 gataagtcca gcaaggagca gcgaagctcc cgaaatcaac gtgactgtga gacgaccgcg
     3301 tttcatgcag cgttccgggg cgagggtgag aatttgtagc gagtaagcat atcccgcgat
     3361 tcaggtacgc gacagagagg cagatcgctc aacggcgtcc gataatcttt attaaatctt
     3421 gccatcgtat gggtccggct gtcaaagcat gagtgccgca ctctctcact ttgagtgcgg
     3481 cactcatgct tgtcttcgct gcaacgaccg tgaccgcgct tagctaggcg gctttcaaat
     3541 cggatgtgca gtgggggcag cgcgtcgcag cgatcgggat gtcggtagcg caatatgggc
     3601 acggctttgt ggtggcggtc ggtgccggct tcttgtaaac cttgttcgcg gaacggacga
     3661 cgatgaagat cgcgagggca acgatgagga acgtgatgat gttgttgacg aagagaccgt
     3721 agttaagtgt cacagcgcca gccgccttcg catcagcgag cgaggcatac ggcggcgctg
     3781 cctttacacc gtccttgagc agcacgtaca gattggagaa atcgacgtgg cccagcaaca
     3841 agccgatcgg tggcatgatc acgtcgtcca cgagcgattt gaccacaacg ccgaacgccg
     3901 cgccgatcac gactgcaacg gccaggtcaa gcacgttgcc gcgcataatg aatgctttga
     3961 agtcactcca catcggcaga tctcccgcga taaggtgaac agactcaaaa aaagatacgc
     4021 gccagcgggg ggtccgccag cgcgtatcgg tgcgatcggc cgacgggctg tacgtctggc
     4081 ccatcagcat atgaaacgct gttacatgac cgtgatcgtc ttggtcatgc cgtgcatgaa
     4141 gtgcggcttt ccatccttga cgtccggaag aaaacatatg agcgcatact gtccgggcgt
     4201 gatatcggcg gtgaagtagt tcgtgtcgcc gatgaaacca gcaaccccac ctatggccga
     4261 ccctggtggc ggacccgccg gcttgttcat ccatccgagc agctgctcga cagtcttgcc
     4321 gggtgcgagt ctgacgagct ccacctcgtg cggctgcgat gcgccattgg tcaccgcgaa
     4381 cgtgtgtgtc ccggctgtca gcggcttcga aagatcgaat ccgtagtcaa cgagcttgat
     4441 gtccacgtcc gcgactggag ccgccgccgg tgcgccagct ggtgcggcgc cgacggtgaa
     4501 ggccttgatc atccccttcg caaagtgcgg tacgccaccc ggaacgtcca cgaagcagat
     4561 catcgcatag ttgccgggag tgaggtcgag tgtcgcgttc gactccttag tcggatcagg
     4621 ggcattcggg ccacccatcg gcacggccca catcggcggc gcggccggaa gcgcgagcgc
     4681 agtctcgaga tccttcaacg tctttccgct gtccagtcga atgatgtcga gatgatgcag
     4741 gtccgcaccg tcgttgatga gcttgaaggt cgtgaggccg gccgggatct cggcgggcgc
     4801 gtcaggatat gaaaaatctt tcgcgtggac tgtgactatg ttgggtgcgg cggccgtaga
     4861 tgcagcggtc gcaaccgtcg cagcggtcgt cgaatcagtt ttggcgaccg acgagctttc
     4921 ctttggtgta cacgcagcaa taatgaacac gaacgatcca gctacagcta gccgggtgcg
     4981 catggttttc ctccgggttg tggacttgct ggggaaggta gggtcgggcg gtggtatgtc
     5041 aagaatgtac cgaccgatat gtcaccgctc cagctgatgc atgcgaaact ggcggctgtt
     5101 aaccgcgcta cgtgaccagc gccggctgaa ggtgtggcgg cgaaacagct ccgggccaac
     5161 gccgctcccc gacctgctgg cgccacatcg cgtggtaaag ccccttctgt tccagcagct
     5221 ctgcatgact ccccgattcg acgatgcgtc cacgctccag cacgtagatc gtatccgcat
     5281 gcatgatggt cgagagcctg tgtgcgatca ggatcgcgat cgtctcccgt cgcgtcgcta
     5341 catcgcggat cgtccggctc acctcttctt cagtgatgga gtcgagcgcc gatgtcgctt
     5401 cgtcgaagat gagcagcgat gggcgtcgca gcaacgcacg tgcgatcgcg aggcgctggc
     5461 gctcgccgcc cgataccttc acgccgcctt cgccaatcat tgtgtccaga ccgttgtcgg
     5521 cacgagcgag gaggctgtct gcagccgcct cgtgcagcac tcgcatgcaa tcagcatcgg
     5581 tcgcgtccgg tctcacgaac cgcagattct cggcgatcgt tccggaaaac aactgcgcgt
     5641 cctgtgctac gagtccgata cgtgttcgca gtgcatccag ctcgacttcc gtaccggacg
     5701 taccgttata tagtatccgg ccttccagcg ggtgatacag accgag
//
LOCUS       DATIMD010000649         7222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_863505, whole genome shotgun sequence.
ACCESSION   DATIMD010000649 DATIMD010000000
VERSION     DATIMD010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 7222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7222
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_863505"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /locus_tag="VLI40_14470"
     CDS             <1..234
                     /locus_tag="VLI40_14470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98436.1"
                     /translation="FSLASLIPIAIACLRLVTLRPPRVLSLPCLRRRIALPTVELAFL
                     LYFLPDDFRLDLRPDVLWAEDFRPDRDALRAAI"
     gene            complement(351..1361)
                     /locus_tag="VLI40_14475"
     CDS             complement(351..1361)
                     /locus_tag="VLI40_14475"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSU98437.1"
                     /translation="MTDETPQTRGEHSGEHRGSPFPLYERFPALRAIPRVSLCVLPSP
                     VDRVTVDDTEIWLKLDGLNAAVCGGNKARALEFLLAGVTSGDTIITAGGEGSTHVLAT
                     AMHARRLGARTIGIRWRHDMNHSAYRVADMISDECVSSRIYGGATRALLAAQLARLTQ
                     PCRYVPLGGSTPLGVLAHVNAALELAEQIRTGELPMPARVVVPLGSGGTVAGLSLGFA
                     IAGLDIATICVQVTPAIVANRLRVRRLISRTARLIEQMTGEHVPRVPAHLLGVVHDAY
                     GGAYGRPLPAATAAARSLATSTGILLDDTYSAKAFVVALALARTADGTTLFWNTFDSR
                     LL"
     gene            complement(1416..2567)
                     /locus_tag="VLI40_14480"
     CDS             complement(1416..2567)
                     /locus_tag="VLI40_14480"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HSU98438.1"
                     /translation="MVRAAIVVLLVGGGGYVIFRAHNLIFVAYIGMLLGIAISAGAAR
                     LRRFGIGQGLGAALIVAASVALLIGFGAWTGPTVRSQYRELKQRLPEAFVKLDRWLGQ
                     RQGGVVGSLLTGEPDSIAVTPLSQQQRDSIALNEPIGVDSLVHLKALREQLLARTPGA
                     SGYVLPVLHSTVEVAAGIVIIFFLAVYIGADPRLYRRGIIELIPHRQRERGEQVLEAI
                     TLALRRWLVTQLIAMVVMGVVATAVLTALQVRAAVPLGILSGLLQFVPMAGPIISAVP
                     AIAMGFVDSPEKAAAVLVAFYIIHFLESHLLIPLLMKEGVNLPPVLTVLTQAGMALAF
                     GVMGLFVAVPLLVLVMILVKMLYVEDVVGDPTPLPFVAEPPPHPDEVTG"
     gene            2653..3789
                     /locus_tag="VLI40_14485"
     CDS             2653..3789
                     /locus_tag="VLI40_14485"
                     /inference="COORDINATES: protein motif:HMM:NF013755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HRDC domain-containing protein"
                     /protein_id="HSU98439.1"
                     /translation="MADPYQPVYLDTAEKAALFIDSVSDVREIAIDTEGASFHRYVDR
                     IYLLQLSTQHHSAIIDPLHAGPLPKLGALMENREVEVIFHDADYDLRLLRQDYGWHTT
                     HVFDTRIAAQLLGIPAFGLAALLEKFFEVKLDKQHQRADWSMRPLTPSMLEYAAQDTR
                     YLLDLRDELRTGLESLGRMSWAEEEFERLESIQFAPDDPATNFMRTKGARDLKRRELA
                     VLRELVTWRDERAAALDRATFRVMGNEAMFEIARVHPGTRDELAAIKGVPRGVVERHA
                     QDLLDAVQRGLAVPEADLPRFPRAPRWDRDPDFDANVAKLKSVRDAMAAQLKLDPGVL
                     CARDRLEAVARRKPKTIEELAEIPELRRWQAVVLGSEFVSVLRG"
     gene            3910..4437
                     /locus_tag="VLI40_14490"
     CDS             3910..4437
                     /locus_tag="VLI40_14490"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSU98440.1"
                     /translation="MSPTAAEPDVQLAASGDRRAFERLYRDNVNRVYAVCVRMCGDRM
                     RAEELAQDAFVRAWERLPQFRGESAFSTWLHRLTVNVVLEAQRTERRSRARIESDDVL
                     DEVPPIARREHHAEKMDLAVAIAALPPGARAVFALHDVEGYKHEEIAEMLDITAGGSK
                     AQLHRARRLLREALA"
     gene            4434..5231
                     /locus_tag="VLI40_14495"
     CDS             4434..5231
                     /locus_tag="VLI40_14495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98441.1"
                     /translation="MTNEEPLMDDEEAGDAVAKYLEENPELLQGIVPEHDLWPAIESR
                     ISARIIPMSARPARAARKSFGWVPMLIAASALVAASAGITYVLTTRSVVQNGAPSGAV
                     ASNATQTPTVTPSVTDTQSPVVKQGSVPATQSQVGSVATGATTQTATRVATRVAEDSP
                     NVAQRGRPAVQLASRNGTSEGDALRDTYDSEITTLRAALDARRGQLNPSTVAVIEQNL
                     RVIDEAIRQSRAALAKDPNSSLLNDQLDRTLAKKTGLLRAAALLPSA"
     gene            5305..6327
                     /locus_tag="VLI40_14500"
     CDS             5305..6327
                     /locus_tag="VLI40_14500"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HSU98442.1"
                     /translation="MQRLVLPLMIAALAIGAAPGAAQVPTPPSPPSPPDAPVSPRAPR
                     APRSPRAPRAWVGGDNGVARIDTVLPFSSNGTIDLSLVAGTMKVSTWDRNQVHVVAST
                     TGAPSLELDASSSHLTLEQTRSGGRHGRGDDVGTATYDVTVPAGSRASLSAVSGSINA
                     AGLRGAVDVSNVSGSVDLRDLGSSLNVEGVSGNITVTNVTSDAHVENVSGRISLSGVG
                     GSATAETVSGGINIAGVRGDRVHVTTVSGDIDFAGSVTGSGRYDFETHSGEANLKLAS
                     NTQATVSVETFSGSVSNDFPGAVRRRNSDPDDNSTNYEFTINRGGGRVRVETFSGSVH
                     ISKGNQ"
     gene            6324..7178
                     /locus_tag="VLI40_14505"
     CDS             6324..7178
                     /locus_tag="VLI40_14505"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HSU98443.1"
                     /translation="MIRTSGYLIAAACVAAVAATPLMAQQDLGRDGTTWKWDGPLASG
                     GSLKLFNINGALRLTASSDGSVHVQAVKHVHSGGDPRTVHYAVVREGNNLTICAMWND
                     DATCDIDGMSGNRNNDNEGNRRRNVTAEISVQVPAGVRTAGNTVNGDVSVERISSDVR
                     ANTVNGAVRVTQVTGDVNAHTVNGDVNVDTRGGTVSGETVNGSVTASMGSSGTGDMRF
                     STVNGGIDITTPSAFNADVRLSTLNGSIDSKFPLDFDRRRRRAEGTVGSGGRELRAST
                     VNGSITLQ"
BASE COUNT         1379 a         2181 c         2385 g         1277 t
ORIGIN      
        1 ttttctctcg cctcgttgat tccgattgcg attgcctgtt tgcggctcgt caccttgcgt
       61 ccgccgcgtg tcttgagctt gccgtgcttg cgccggcgca tcgcgctgcc aacggtcgag
      121 ctcgccttcc tgctgtactt cctgccggat gacttccggc tcgacttgcg tcctgatgtc
      181 ttgtgggccg aagactttcg tcccgaccgt gacgccttgc gtgctgccat ctgaacctcc
      241 ccggaaaggt tgatctgtga cgcacgtgat gttttgcaag agccgcgccc attcggcgta
      301 tgtgtgctga tcgtaccggc ttcgcgccgg tgcgacgcca gcgcgaagcg tcagagaaga
      361 cgggaatcga acgtgttcca gaacagcgtt gttccgtctg ccgtgcgcgc gagcgcgagt
      421 gccacaacga acgctttcgc ggaatacgtg tcgtcgagaa gaatccccgt gctcgtcgcg
      481 agagagcgcg cagcggcggt tgcggcggga agcggtctgc cgtacgcgcc gccatacgcg
      541 tcgtgcacga caccgagcag gtgcgcggga actcgtggaa catgctctcc ggtcatctgt
      601 tcgataaggc gcgcggttcg cgatatcaac cgccgcacgc gcaacctgtt cgcgacgatc
      661 gcgggcgtta cctgcacgca gatcgtggcg atgtcgagtc ccgcaatcgc gaatccgagt
      721 gacagtccgg cgacagttcc gccgcttccg agtggcacta ccacacgcgc cggcatcggc
      781 agctcgccgg tgcggatctg ctccgcgagc tccagtgcgg cgttgacatg cgcgagaacg
      841 ccgagcggtg tcgatccgcc gagcggaacg taacgacatg gttgcgtgag ccgcgccagt
      901 tgcgcggcaa gcagcgcgcg tgtcgctccg ccgtatatgc gcgacgacac gcactcgtcc
      961 gagatcatgt cggcaacacg gtacgcggaa tgattcatgt cgtgtcgcca gcgtatgccg
     1021 atggtgcggg cgccgagtct gcgtgcgtgc atcgcggtag ccagcacgtg cgtggaccct
     1081 tcaccaccag cggtgattat ggtgtcaccg ctcgtgacgc ctgcgagcag aaactcgagc
     1141 gctcgcgcct tgttgccacc gcagactgcg gcgttgaggc cgtccagctt gagccatatt
     1201 tccgtgtcat cgactgtgac acgatcgact ggcgacggca gcacgcacag cgagacgcgc
     1261 ggaattgcgc gaagagcggg gaaccgctcg tacagcggaa acggcgatcc tctgtgctct
     1321 ccgctgtgct ctccgcgagt ctgcggcgtc tcgtccgtca tgcgtatacc gtcactctat
     1381 cgagtcactt tatcgcgtca ctctgtcgcg tcactctatc ctgtcacttc atccgggtgc
     1441 ggcggcggct ctgcgacaaa tggcaacggg gtgggatcgc cgacgacgtc ctcgacgtac
     1501 agcatcttca cgaggatcat caccagcacg agcagcggaa cggcaacgaa caatcccatc
     1561 acgccgaacg cgagcgccat gccggcctgg gtgagcaccg tgagaaccgg cggcagattc
     1621 actccttcct tcatgaggag cgggatcagc aggtggcttt cgaggaagtg aatgatgtag
     1681 aaggcgacca gcaccgcagc ggccttttca ggcgaatcca caaagcccat cgcgatcgcc
     1741 ggtacggcgc tgatgatggg tcccgccatg gggacgaact gcagcaggcc ggacaggatc
     1801 ccgagcggga ccgctgcgcg cacctgcagc gccgtgagca ccgccgtggc gaccacgccc
     1861 atcaccacca tggcgatgag ctgggtgacc agccagcgcc gcagggccag cgttatcgcc
     1921 tcaagtacct gctccccgcg ctctcgttgt cggtgcggaa tcagttcgat gatgccgcga
     1981 cggtacagcc tgggatcggc gccgatgtaa acggccagga aaaagatgat gacgatgccc
     2041 gccgcgacct cgaccgtcga gtgcagcacc ggcaggacat agccggatgc ccccggagtc
     2101 cgcgccagga gctgctccct gagcgccttg aggtgaacca gggaatccac gccaatgggc
     2161 tcatttagcg ctatactgtc gcgctgttgc tgtgatagtg gcgtcactgc tatggagtca
     2221 ggctcgccgg taagcagtga gccgaccact ccgccctgac gttggcccag ccatctgtcc
     2281 agctttacga acgcctcggg gagtcgttgc ttgagctcgc ggtactgaga tctgaccgtt
     2341 ggccccgtcc aggcgccgaa gcctatgagg agcgcgaccg aggcggcaac gatgagagcc
     2401 gcgcccagtc cctggccgat tccgaaccgg cgcaacctcg cagcccccgc cgagatcgcg
     2461 atgccaagga gcatgccgat gtaggcgacg aagatgaggt tgtgcgcgcg gaagattacg
     2521 tagccgccgc cgcccaccag caggacgacg attgccgctc gcaccatgtc gcgcgtgcgc
     2581 cacgcgattg gacgttctgt gcgacgatct gggggacgat gggatcgctc tgaggtcatg
     2641 atagattgag gtatggcaga tccgtaccag ccagtttacc tggacaccgc agaaaaagcc
     2701 gctcttttca tcgactcggt ctcagacgtc cgcgaaatcg cgatcgatac tgaaggggcg
     2761 agctttcatc gctacgtgga ccggatatat ctgctgcagc tctccacgca gcatcatagt
     2821 gccatcatcg atcccctgca cgccggcccg cttcccaagc ttggcgcgtt gatggagaat
     2881 cgggaagtgg aggtcatctt tcatgatgcc gactatgacc tccggctgct ccgccaggat
     2941 tacggctggc atacgacgca tgtgtttgac acccgaattg ccgcacagtt gctgggaatt
     3001 cctgcgttcg ggcttgcggc gttgctggag aagttcttcg aggtgaagct ggacaagcag
     3061 catcagcgcg ccgactggtc gatgcggcca ctcacgccca gcatgctcga gtatgcagcg
     3121 caggatacgc gctatctgct ggatttgagg gacgaattgc ggacgggact ggagtcgctg
     3181 ggtcggatgt cgtgggcgga agaggaattc gagcgcctcg aatcgattca gttcgctcca
     3241 gacgatccgg caacgaattt catgcgtacc aagggggcgc gcgatctcaa gcgtcgcgag
     3301 ctggcagtgc tccgcgagct ggtcacctgg cgtgacgagc gcgcggctgc tctggaccgc
     3361 gcgacgttcc gggtgatggg caacgaggcg atgttcgaga tcgcgcgcgt ccatcccgga
     3421 acgcgcgatg agcttgctgc gatcaagggt gttccgcgtg gcgtggtcga gcgtcacgca
     3481 caggatctgc tggatgcggt acagcgcggt cttgccgttc ccgaggccga tctgccgcga
     3541 ttcccgcggg ctccgcgttg ggaccgcgac cccgatttcg atgccaacgt cgcgaagctc
     3601 aaatcagtca gggacgcgat ggcggcccag ctcaagctgg accccggggt cctgtgtgcg
     3661 cgggatcgtc tggaagccgt tgcgcgccgg aagccgaaaa cgatcgagga gctcgcggag
     3721 attcccgagt tgaggcgctg gcaggcggtg gtgttgggtt cggagttcgt gtcggtgttg
     3781 cgcgggtagg gtcgtcgtcg cgattccgac gccccgactg attcaaacct tccttcgctc
     3841 cggtccgtct tattgccagg accgatgcag acagccattg ccacctcgcc cgagaccatg
     3901 agtccaacca tgagtcccac cgccgccgag ccggatgtac agctcgcggc cagcggggac
     3961 aggcgcgcct ttgagcgact gtaccgggac aatgtgaacc gtgtctacgc ggtgtgtgtg
     4021 cggatgtgtg gtgaccgcat gcgcgccgag gagctggcgc aggatgcgtt cgtgcgagcg
     4081 tgggagcggc tgccgcagtt tcgcggggaa tcggcgttct ccacatggct tcatcgattg
     4141 acggtgaacg tcgtgctgga ggcccagcgc accgaacgac gcagccgcgc ccgaatagag
     4201 agcgacgacg tgctggatga ggtaccgccg atcgcaaggc gcgagcatca tgcggagaag
     4261 atggacctcg cagttgcgat agcggcgcta ccacccggcg cccgcgcggt gttcgcactg
     4321 catgacgttg aaggatacaa gcacgaggag atcgcggaga tgctcgacat caccgcaggt
     4381 gggagcaagg ctcagctgca tcgcgctcgg cgacttctca gggaggcact ggcatgacga
     4441 acgaagaacc gctcatggat gacgaagagg ctggagacgc ggtggcgaag tatctcgagg
     4501 aaaacccgga gctgctgcag ggcatcgtgc cggagcacga tctgtggccg gcaatcgaga
     4561 gccgcatttc ggcgcgcatc atcccgatgt cggctcggcc ggcacgagct gcacgcaagt
     4621 cgttcggatg ggtgccgatg ctgatagccg cgtcggcgct cgtcgcggca agtgcgggga
     4681 tcacgtacgt attgaccacg cgctccgtcg tacagaacgg cgcgccgagc ggcgcagtgg
     4741 cgagcaacgc gactcagacg ccgacagtta cgccctcggt gactgatacg caatcgccgg
     4801 tcgtgaagca gggtagtgtt ccggcaacgc aatcccaggt tgggagcgtt gcaacgggtg
     4861 ccacgacaca gactgcgacg cgtgttgcga cgcgtgttgc ggaagattca ccgaacgtcg
     4921 cgcagcgcgg tcgtcccgcg gtacagcttg cgtcgcgcaa tgggaccagc gaaggcgacg
     4981 cgttgcgcga cacctacgac tctgaaatca cgaccctgcg cgccgcactg gacgcgcggc
     5041 gcgggcagtt gaatccgtcg acggtcgcag tgatcgagca gaatctgcgc gtgatcgacg
     5101 aagcaattcg ccagtcaagg gcagcgctag cgaaagatcc gaacagcagt ctcctgaatg
     5161 atcagctgga ccgcacgctc gccaagaaga cagggttgtt gcgcgcggct gcactacttc
     5221 cgtcagcatg atgacgcgag aggatatgag gatatgagtg acagggacat gaaactacga
     5281 atgcagcgac gaatgaagct acgaatgcag cgactagtcc tgccgctcat gatcgcggcg
     5341 ctcgcgatcg gagcagctcc gggcgcggct caggtaccga caccaccgtc gccgcccagt
     5401 ccgcccgatg cgccggtgag cccgcgggcg ccgcgggcgc cgcgttcgcc acgggcgccg
     5461 cgggcatggg tcggtggcga taatggtgtt gcgagaatcg acactgtgct tccgttctcg
     5521 tcgaacggca ctatcgacct ctcgctggtg gcggggacga tgaaggtttc cacctgggac
     5581 aggaatcagg tgcatgtggt tgccagtacc accggcgcac catcgttgga gctcgacgcg
     5641 agcagctcgc atctgaccct ggaacagacg aggtccggag gccggcatgg ccgcggtgat
     5701 gacgtgggga ccgcgacgta cgacgtcacc gttccggcgg gatcccgcgc atcgctgtcg
     5761 gcggtatcgg gaagcatcaa tgcagccggt ctgcgcggcg cggtcgacgt gagcaacgtc
     5821 agcggatcgg tggacctgcg tgacctgggc tcgtcgctca acgttgaagg tgtatcgggt
     5881 aatatcactg tcaccaacgt cacgagcgat gcgcacgtcg agaacgtcag tgggcgcatc
     5941 tcgctctcgg gggttggcgg gtcagctacc gccgaaactg tgagcggggg catcaacata
     6001 gctggtgtgc ggggcgaccg ggttcacgtg acgacggtga gcggcgacat cgacttcgca
     6061 ggatccgtga cgggctccgg tcgatatgat ttcgagacgc attcggggga ggccaacctg
     6121 aagctggcca gcaacaccca ggcgactgta agtgtcgaaa cattcagcgg gtcggtatcg
     6181 aacgactttc ccggcgcggt gaggcgacgg aacagcgatc cggatgacaa cagtaccaat
     6241 tacgagttca caatcaaccg cggcggtgga cgagtgcgag tagaaacgtt cagtggcagc
     6301 gtgcacatct caaaggggaa ccaatgatca ggacttccgg atatctaatc gcggccgcct
     6361 gtgtcgctgc ggttgccgcc acaccgctca tggcccagca ggatcttggg cgcgatggaa
     6421 ctacgtggaa gtgggacggc ccgcttgcga gtggcggatc gctcaagctg ttcaacatca
     6481 acggggcact gcgcctcacc gcaagctccg atgggagcgt gcacgtgcag gcggtgaagc
     6541 acgttcactc gggcggcgat cctcgcaccg ttcactatgc ggtggtgcgc gagggaaata
     6601 acctcacgat ctgcgccatg tggaacgacg atgcaacgtg cgacatcgac ggcatgagcg
     6661 gcaaccggaa caacgacaac gaaggcaatc gcaggcgcaa cgtcactgcc gagatttcag
     6721 tgcaggtgcc tgccggtgtg cgcacagctg gaaacacggt caatggtgac gtttccgtgg
     6781 agcgcatcag ctcggatgtt cgcgcaaaca ccgtcaacgg cgccgttcgc gtgacgcagg
     6841 tcacgggcga cgtgaacgct cacacggtga acggcgatgt gaacgtcgac acacgcggcg
     6901 ggactgtatc cggagagacc gtaaacggct cggtcaccgc atccatggga agctccggta
     6961 ccggcgacat gcgcttctct accgtcaacg gtggcatcga catcacgaca ccgtccgctt
     7021 tcaatgccga cgtcagactg agcacgctca acggctcgat cgacagcaag ttcccgctgg
     7081 actttgacag acgcaggcga cgcgcagagg gaaccgtcgg aagcggcgga cgggaactgc
     7141 gtgcgagtac tgttaacgga tcgataacgc tgcagtaatt tccggagtgc gttgaccggc
     7201 gcggatgggc agcactgccc ct
//
LOCUS       DATIMD010000650         1700 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2597437, whole genome shotgun sequence.
ACCESSION   DATIMD010000650 DATIMD010000000
VERSION     DATIMD010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2597437"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..1045
                     /locus_tag="VLI40_14510"
     CDS             101..1045
                     /locus_tag="VLI40_14510"
                     /inference="COORDINATES: protein motif:HMM:NF044972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HSU98444.1"
                     /translation="MPIPPVVKQLAQRTRLLFIIFLAAWLVPQFVEFPRRYEARLDRA
                     LEAVAVIALFLQVGIWVNVLVNYWSRSYIHRHGHDRGDATTIQAISVLIKVTLWIILA
                     VITLEEGFRQNVTALVAGLGVGGIAIAFALQNVLADVFAAMSIVTDKPFVIGDSILVD
                     TYSGKVEHIGLKSTRVRSDTGEQIVFGNSDLLKGRIRNFGRMEERQATVLTRVAGNTP
                     PDKLALVPKIVREVIEGVPNTRFVRAAMTAMGDSTIDFTTVYYLTDPAYQVYVDSQQA
                     VMLELIRRLSDEGILLNVRLEATAKEKGAGLNVSGAPA"
     gene            complement(1073..1543)
                     /locus_tag="VLI40_14515"
     CDS             complement(1073..1543)
                     /locus_tag="VLI40_14515"
                     /inference="COORDINATES: protein motif:HMM:NF014688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HSU98445.1"
                     /translation="MGEAGRQGGEHLPEAIERVLRRFRMMDRADKMQALVQYSRKLEP
                     VPERYANVDRTAFTVPECQTRVDLFPEVHDGKMHFYADVNVRQSPTVAAVLAIVFAAV
                     NDQPPAVTLAIPHDFVPVLMEGMGLNAREVGLNAMIARLKRAAASALASNPASG"
BASE COUNT          333 a          544 c          483 g          340 t
ORIGIN      
        1 ctgcggtaac tgcgacgcat gcgaccagct cacggagtgg gaacgccggc gaaccgcgta
       61 gtcccgcgta atcccgctaa agcgctgtaa ttttatcgcc atgccgattc cgccagtagt
      121 aaagcagctc gcgcagcgca cccgcctgct cttcataatc tttctcgcgg cttggctcgt
      181 tccgcagttc gtcgagttcc cacgaagata cgaagcacgg ctcgaccgcg ccctggaagc
      241 ggtagctgtt atcgcgttgt tccttcaggt cgggatctgg gtcaacgttc tggtcaacta
      301 ctggtcccgt tcgtacatcc accgccacgg gcacgatcgt ggcgacgcga cgaccattca
      361 ggcgatctcg gtgctgatca aggtcactct gtggatcata ctcgcggtca taacactcga
      421 agaaggattc cggcagaacg tcaccgcact cgtcgccgga ctcggtgttg gcggtatcgc
      481 gattgcgttt gcgctccaga acgttctcgc tgatgtcttc gccgcgatgt cgatagtcac
      541 cgacaagcca ttcgttatcg gcgactcgat cctggtggac acgtattcag gaaaggtcga
      601 gcacatcggc ctcaagtcga cgcgcgtacg ctccgatacc ggcgagcaga tcgtcttcgg
      661 caacagcgac ctgctcaagg ggcgcattcg caacttcggg cggatggagg aacgccaggc
      721 gacagttttg acgcgcgttg ccggtaacac accccccgac aagcttgcgc tcgttccgaa
      781 aatcgtccgt gaagtaatcg agggtgttcc caatacgcgc ttcgtccgcg ccgcgatgac
      841 agcgatgggc gattccacga tcgacttcac gactgtgtac tatctcaccg atccggcgta
      901 tcaggtctac gtcgactcac agcaagcagt gatgctggag ctgatacgga ggctgtccga
      961 cgaaggcatc ctgctcaatg tccgacttga agcgaccgcg aaggaaaagg gcgccggcct
     1021 caatgtctcc ggagcaccgg cctgattcac tgcattcaca gagtcgacgt cgtcacccgg
     1081 atgccgggtt cgacgccaaa gccgacgccg cagcgcgctt gagacgcgcg atcatcgcgt
     1141 tcaagcccac ctcgcgtgcg ttgagaccca tcccttccat gagaaccggc acgaagtcat
     1201 gcgggatcgc gagcgtgacc gccggaggtt gatcgttcac cgccgcaaac acaatcgcga
     1261 gtaccgccgc aacggtcggt gattgacgca cattgacgtc tgcatagaag tgcattttgc
     1321 catcgtgtac ttccgggaac aggtcgacgc gcgtctgaca ctccggtacg gtgaacgcgg
     1381 tacgatcgac gttggcgtac cgctccggga ccggctccag cttgcgcgag tactgcacga
     1441 gcgcctgcat cttgtccgcg cgatccatca tgcggaacct gcgcagcacc cgctcgattg
     1501 cctccggaag atgctcacca ccctgtctgc cagcttcgcc caacgctatt tcccctcacc
     1561 gatcccgctc cgggcgacaa gctgcgcagc gagcacggtc tggatcacac tcgtgatgtt
     1621 gttggtcgct ccgtctgcag cactcgtacc gtcgctcgag atattgatca accgcgcctc
     1681 ggcgagtgca ctggcgatca
//
LOCUS       DATIMD010000651         2180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4330636, whole genome shotgun sequence.
ACCESSION   DATIMD010000651 DATIMD010000000
VERSION     DATIMD010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4330636"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..710)
                     /locus_tag="VLI40_14520"
     CDS             complement(<1..710)
                     /locus_tag="VLI40_14520"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSU98446.1"
                     /translation="MTLRSLHIDAGRTWRGGQRQVFLLATSLRAHGREPLVVGVGGSP
                     LLDRLQAAGIATASIPMRSDWDLRSAKRLRSVIRAWHPDVVHAHDARAHAIALIALAG
                     DTTPLVVTRRVTFPLKSVRVKYGLRVTRFIAISNAVKTAMVRSGVDAHRIIVVHSGVP
                     TPSAPSPRDWRKELGWSRDTVVAGVVGAMTAEKGIDSLRHVGTWLSEDAIRRTRIVLL
                     GGTAKGPIKLGPLTAQQAG"
     gene            complement(707..1534)
                     /locus_tag="VLI40_14525"
     CDS             complement(707..1534)
                     /locus_tag="VLI40_14525"
                     /inference="COORDINATES: protein motif:HMM:NF019342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HSU98447.1"
                     /translation="MVPRPRRSPLARGPPQSRFREECQPTPSSKPRAVSFRPIVAVSA
                     AVRSESDAPSACLRTTYLTALENARLVPIVAAPLHDPTAADALMERVDALVLTGGADL
                     NPALYNEPRHPMLGPVSDIRDHWEIALVNAAKRRGTPLLAICRGAQLVNVALGGSLIQ
                     DLPSQRPGEINHDPDRPRSSRTHGVEIQSESRLARAIGLTSLEINSVHHQSIERVADE
                     LRVVAVAPDGVIEGVESAADSPWWCVGVQWHPEDLIGTTESWDRDIFSAFARIVGKQ"
     gene            1519..>2180
                     /locus_tag="VLI40_14530"
     CDS             1519..>2180
                     /locus_tag="VLI40_14530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98448.1"
                     /translation="MDAAPPSATASGATASAAPAPLLCHGETITRIEIHTYPPFEAGG
                     TNLTARAARLATKLHATTRPEVISRFLPIRVGDRCEDVRLREAERILRAQPFLADATL
                     LVTPDGSDGVDVDVVTFDEVSLVLDGTVTSKSPVIRAVRFGEDNLSGAALSATGAWEE
                     SQSYRDIYKGRVVDYQLFGRPYQLSLQGTRNEIGGSWDALVTHPFITDLQRTSWRASA
                     GSS"
BASE COUNT          393 a          680 c          713 g          394 t
ORIGIN      
        1 cccgcctgct gcgcggttag cggccccagc ttgatcggac cctttgccgt gccgccgaga
       61 aggactatgc gcgttcggcg aatcgcgtcc tcgctgagcc aggtgccgac gtgccggagc
      121 gaatcgattc ctttttcggc cgtcattgcg cccacaacgc ccgcgacgac tgtatcgcgc
      181 gaccagccga gctccttgcg ccagtcgcgt ggtgacggcg cggacggcgt tggtacgccc
      241 gagtgtacca cgatgatccg gtgagcatca acgccggagc gcaccatggc ggttttcacg
      301 gcattcgata tcgcgatgaa gcgcgtgacg cgcaggccgt atttcacgcg cacggacttg
      361 agcggaaacg ttacacgtcg cgttacaacg agcggagtcg tgtcgccggc gagggcgata
      421 agcgcgatcg cgtgggctcg tgcatcatgc gcgtgaacga catccggatg ccatgcacga
      481 atcaccgacc gcagtcgctt ggcagagcgg agatcccagt cggagcgcat tggaatcgac
      541 gcagtggcga tccctgccgc ctgaagtcga tccagtaacg gagagccgcc gacgccgacg
      601 acgaggggct cacgcccgtg tgcgcgcagc gacgtcgcca gcagaaatac ctgccgttgc
      661 ccgccacgcc aggtgcggcc cgcgtcgatg tgcagcgagc ggagtgtcac tgcttgccga
      721 ctatccgggc gaatgcgctg aaaatatcac ggtcccatga ctcggtggtt ccaatcagat
      781 cttctggatg ccactgcact ccgacacacc accacggtga atctgcggca gattccacgc
      841 cctcgatcac tccgtcggga gcgacagcga ccacgcggag ctcatccgca acgcgctcga
      901 tcgactgatg gtgcactgaa ttgatttcca ggctcgtcaa tccgatggcg cgtgcaaggc
      961 gcgattcact ctgaatctcg acgccatggg tgcgcgagct acgcggccga tcgggatcgt
     1021 ggttgatttc gcctggacgc tgactgggaa ggtcctgtat cagcgagccg ccgagcgcta
     1081 cattgaccag ctgcgcgccg cggcagattg cgagcagcgg agttccgcgc cgcttcgcgg
     1141 cattcaccag cgcgatctcc cagtgatccc tgatgtcgga cacgggcccc agcatggggt
     1201 gccgtggctc gttgtacagt gcggggttca ggtcggcacc gccggtgagt accagggcgt
     1261 ccacgcgctc catgagcgca tcggcggcgg ttgggtcgtg aagaggcgca gcgacgattg
     1321 gtacaagccg tgcgttctcc agggccgtga ggtacgtcgt tctcaaacag gcagacggtg
     1381 cgtcgctctc gctgcggact gcggcgctaa ccgctacaat aggacggaat gacacagctc
     1441 tgggtttgga ggatggcgtc ggttggcact cttctcggaa tctgctctgc ggcggcccgc
     1501 gggcaagggg agagcgtcgt ggacgcggca ccacccagtg cgacggcaag tggggctacg
     1561 gcaagtgcgg cgccagcccc gctgctctgc catggtgaaa ccataacgcg gatcgaaatc
     1621 catacctatc cgccgttcga ggcgggtggc accaatctca ccgcgcgcgc tgcgagactg
     1681 gccacgaaac tccatgcgac gacgcgaccc gaggtaatca gccgctttct gccgatccgt
     1741 gtgggcgatc gatgcgaaga tgttcgcctg cgtgaggccg agcgaattct gcgcgcccag
     1801 ccattccttg cggatgcgac tctgctggtg actcctgacg gcagcgatgg cgtcgatgtg
     1861 gatgtcgtca ccttcgacga agtgtcgctc gtgctcgatg gaactgtcac gtcgaaatca
     1921 ccggtcattc gtgcagttcg ctttggcgag gacaatctct caggtgctgc gctgtcggca
     1981 acgggggcgt gggaggagag ccagtcctac cgcgacatct acaagggacg cgtcgtggac
     2041 tatcagttgt tcggcaggcc gtaccagctc tcgcttcagg gaacacgaaa cgagatcggc
     2101 ggcagctggg atgcgctggt gacgcacccg ttcatcaccg acctgcaacg cacgtcatgg
     2161 cgcgcgtcgg ccggttcatc
//
LOCUS       DATIMD010000652         3147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_4619219, whole genome shotgun sequence.
ACCESSION   DATIMD010000652 DATIMD010000000
VERSION     DATIMD010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 3147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3147
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4619219"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VLI40_14535"
     CDS             <1..201
                     /locus_tag="VLI40_14535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98449.1"
                     /translation="EGSTATAHVEFTRVDDEHATGKMHMTMNSTRNGRSMSGSSDSTL
                     KYKYIGADCGDVKPMGASAGAH"
     gene            290..2233
                     /locus_tag="VLI40_14540"
     CDS             290..2233
                     /locus_tag="VLI40_14540"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98450.1"
                     /translation="MEIARIASAAFLCVLSLNVHAQSGTRPIQIVADLTEAPRKLYHA
                     EVDLPVKTGPLTLITPQWIPGNHRPNGPVEDITGVVFTANGQTLPWRRDDVNLFEFHL
                     TIPRGVTTLHAHLDCIVTSRASTKMAVLEWEKLLLYPANVPVRDIPIQPSVTVPAGWG
                     IGTALSPVDKGAPPPTTGVDESAHTPPPGSTTTRYAQTTVEQLEDSPVIAGQYFHEFP
                     LAPQVTPKHYIDVVADEETDANLRPEFLAEISNLVRETGAMYASRHYNVYHFLLTLSD
                     TAGGEGLEHGQSSDNGVREKTYSDATHQIASADLLAHEFTHSWNGKYRRPARLYQPDF
                     ATPQQGDLLWVYEGMTQYLGNVLAARSGLKTQEQYRDMLALSAANLDEKPGREWRSTE
                     DSAISSSILRETEPAWSNWRRGQDYYQEGELVWLDADTLIRKLTNDTKSLNDFTRMFL
                     GKGGNTGPLIVPYELPEIVADLNQIAPYDWAKFFHDRIVNINPRADLDGIERGGYKLV
                     FTEKQTKTETALAASDSRRAAAVNVWYSLGLRITSDGTISDVRWNGPADKAKLSPGQK
                     IFAVNGLVYSPSVLKNAVRDAKGKSEPIHFILQTNQFVSMADIDYHDGERYPSLVRVD
                     GTPDDLDEITKPLTAAPQAEPAR"
     gene            2272..2763
                     /locus_tag="VLI40_14545"
     CDS             2272..2763
                     /locus_tag="VLI40_14545"
                     /inference="COORDINATES: protein motif:HMM:NF019499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin K epoxide reductase family protein"
                     /protein_id="HSU98451.1"
                     /translation="MRYLIALLAVAGVVISSMALHVHMMDPSAAPPCAVSEHWDCGAV
                     NHSKYATFPPLTLDDLDANGHPNPKSFHMPVATVGIVGYALIALFALLGRFWIVLELA
                     QIGFFCAAFLSYIEKYILEKWCIYCVWSQVTITAVLIASIVAVVLQRRKASVATPASV
                     SVT"
     gene            2773..>3147
                     /locus_tag="VLI40_14550"
     CDS             2773..>3147
                     /locus_tag="VLI40_14550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98452.1"
                     /translation="MWPKMLLEFLPHLTRLIPAADNYFSSRKESDRAQAVALTALGDE
                     VRDGLAKAAEEQASFRSEFHQLIASSAQIGVDAARARAGVEDLESRVAAVEKRLINIW
                     RLLWAALVVLTLVLILTAVRTFR"
BASE COUNT          641 a         1022 c          902 g          582 t
ORIGIN      
        1 gagggctcca cggcaaccgc ccacgtcgag ttcaccagag tggatgacga acacgcgaca
       61 ggcaagatgc acatgacgat gaactccacc cgaaacggca gaagcatgag cggctcgtcc
      121 gacagtaccc tcaagtacaa gtacatcggt gcggactgtg gcgatgtgaa gccgatggga
      181 gcctcggcag gagcgcatta gcacgatggg acgatgttgt atgcgtcttc gccgcgcgtt
      241 ctatcgtcaa acaaccaata caaacaactg atgtccatcg aaggtgtaga tggaaattgc
      301 ccgcattgcc tctgccgcgt tcctttgcgt tctttcgctg aatgtccacg cccagtccgg
      361 cacccggccg attcaaatcg tagcggacct tacagaggcg ccgcgcaagc tataccacgc
      421 cgaggttgac ctgccggtga agaccggccc gctgacactt atcacgccac agtggatccc
      481 gggcaatcac cgcccgaacg gtcctgtcga ggacatcact ggcgtggtgt tcacagcaaa
      541 cggccagacc ctgccgtggc gtcgtgatga tgtcaatcta ttcgagttcc acctcacgat
      601 tcctcgggga gtcacgacgc tccacgcgca cctcgattgc atcgtcacct cgcgtgcaag
      661 caccaagatg gccgtcctgg agtgggaaaa gctgttgctg taccccgcga atgtgcccgt
      721 tcgcgacatc cctatccagc cctccgttac cgttcctgcc ggctggggga tcggcacagc
      781 actttcgccg gtcgataaag gcgctccgcc ccctacgacc ggtgtggacg agtcggccca
      841 tacgccaccg cctggaagca caaccacgcg ctacgcccag accaccgtcg agcagctaga
      901 ggactcgccc gtgatcgccg gccaatactt ccacgaattt ccgctcgcgc cccaagtcac
      961 tccgaagcac tacatcgacg tggttgccga cgaagagact gatgccaatc tccgtccgga
     1021 gttcctcgcc gaaatctcca atctggtgcg cgagaccggc gcgatgtatg cttcgcgcca
     1081 ctacaacgtc tatcacttcc tgctcacgct ctcggatacg gccgggggcg agggcctgga
     1141 gcacggccag tcatccgata acggcgtccg cgagaagaca tattcggatg ccactcacca
     1201 gatcgctagc gcggatctgc tggcgcatga gttcacgcac tcctggaatg gcaagtaccg
     1261 caggcccgcg cgactgtacc agccggactt tgccacaccg caacagggcg acctgctctg
     1321 ggtatacgag ggcatgacgc agtatctcgg caacgtgctc gccgcgcggt cgggcctgaa
     1381 gacccaggaa cagtaccgcg acatgcttgc cctcagcgcc gcgaacctgg acgagaagcc
     1441 cgggcgcgag tggcgcagca cggaggactc tgcgatctcc tccagcattc ttcgcgaaac
     1501 agaacccgcc tggtctaact ggcgtcgcgg gcaggactac taccaggaag gcgaactggt
     1561 ctggctcgac gccgacactc tcattcgcaa gctcactaat gacacgaagt cactgaacga
     1621 tttcacccgc atgtttttgg gcaagggcgg caataccggc ccgctgatcg ttccgtacga
     1681 gctacccgag atcgttgcag accttaacca gattgctcct tacgattggg cgaagttctt
     1741 ccacgacagg atcgtgaata tcaatccgcg cgctgacctc gacggcatcg agcgaggggg
     1801 ctacaaactc gttttcacgg agaagcagac gaaaacggag accgcactgg ctgccagcga
     1861 cagccgtcgc gccgcggcgg tgaacgtctg gtactcgctc ggccttcgca tcacctctga
     1921 cgggaccatc agcgatgtcc gctggaacgg gcccgccgac aaggcgaaac tctctccagg
     1981 gcagaagatc ttcgcggtca acggactggt ctactcgccg agcgttttga agaacgccgt
     2041 gcgagacgcg aaaggcaagt ccgagccgat ccatttcatc ctgcagacta accaattcgt
     2101 ttcgatggcc gacatcgact accacgacgg cgagcgttac ccttccctgg tccgcgtcga
     2161 tggcacaccc gacgatctcg acgagatcac gaagccgctt accgcagctc ctcaagcaga
     2221 gccggcgcgg tgactcgttc gccggcaagc aggtctcgta agatggaagg catgagatac
     2281 ctgatcgcgc tccttgcggt tgccggtgta gtcatcagct cgatggcgct acatgttcac
     2341 atgatggacc cctcggcggc gccgccgtgt gccgtctcgg agcactggga ctgcggcgca
     2401 gtaaatcaca gcaagtacgc cacgttcccc cccttgacgc tcgacgacct ggacgcgaac
     2461 ggccacccta acccgaagtc gttccatatg ccagtggcga ccgttggcat cgtcggttac
     2521 gcgctaatcg cgttgttcgc cctgctaggg cgcttctgga tcgtgttgga gttggcacag
     2581 atcggcttct tctgcgccgc cttccttagc tacatcgaga agtacattct tgagaagtgg
     2641 tgcatctact gcgtctggtc gcaggtgacc atcaccgccg tcctcatcgc aagcatcgtg
     2701 gccgtcgtgc tgcagcgacg caaagccagc gtggctactc ccgccagcgt ttccgtgacg
     2761 tagactgacg ccatgtggcc caagatgctg ctcgagttcc tcccgcacct cacgcgactc
     2821 atccccgcgg cagacaacta cttcagctcg cgaaaggaga gcgacagagc gcaagccgtc
     2881 gcgctcacag cgctcggcga cgaggtccgc gatggcctcg cgaaggctgc agaggagcag
     2941 gcatcgttcc gaagcgagtt ccaccagctc attgcaagct ccgcccagat tggcgtggat
     3001 gcggcacgtg cgcgggccgg tgtggaggat ctcgaatcgc gggtcgcggc agtcgagaag
     3061 cggcttatca acatctggcg tctgctttgg gccgctctcg tcgtgctgac cttggtgctc
     3121 atcctgacgg ccgtccgaac ctttcgc
//
LOCUS       DATIMD010000653         2225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_285893, whole genome shotgun sequence.
ACCESSION   DATIMD010000653 DATIMD010000000
VERSION     DATIMD010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285893"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1002
                     /locus_tag="VLI40_14555"
     CDS             <1..1002
                     /locus_tag="VLI40_14555"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSU98453.1"
                     /translation="VFGGGVRVLSTQILNSKLNDAIGLAYVETTVLAISAVAGLLLFR
                     WLEGKRAYVAAGKGGASRQPVRSRWARIGLATAAGLIVLVLVLPHLMIVLVSFAKDGA
                     WTTQVLPPEYTTHNYAGLFTENQLWTPIRNSIVMSLLATAGNVVFCVAGAYLIVTRKF
                     SGRRLLEALVALPWAIPGTAIALGLLATFNKNDLSMGKVLLVGTFWILPLAYFVRDIP
                     LVSQAVEGSLKQMDPSLEPAARGLGASWWMAVRRVVLPAARPGIVAGALLACVTAVGE
                     FVASIVLYTHGNRPISIEILAQLRSYAFGTASAYSALLIGLVLIMALAARLAESRMQ"
     gene            1015..>2225
                     /locus_tag="VLI40_14560"
     CDS             1015..>2225
                     /locus_tag="VLI40_14560"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSU98454.1"
                     /translation="MDQEEREKLPRIVIIGGGFGGLLAAKKLGRIKARVTVLDKTNHH
                     LFQPLLYQVATASLAPTDIAAAIRHVLRYQANTSVELAEVREVDVNAQIVKCSDPSRL
                     KGDFEVPYDYLIVACGTRHSYFGHPEWEKFAPGLKAVEDALEIRRRFLLAFEEADRAA
                     TPEERDEWLTFVIVGAGPTGCELAGVMQEIAHGMRRDFRHVDTGDTSVILLEAGSRIL
                     PAFPEPLAARAARDLAELRVDVRTSSAVTRIEPNAVYVGDHQIRTRSVFWAAGNVASP
                     VSKSLGVPLTKTGQVIVERDLSIPGHPNVFVIGDLAHALQKNGQPAPGVAQVAMQEGR
                     VAAKNVIATIERRPRSDFNYFNKGDLATIGRGKAIANLFGGKIQVGGRLAWLLWLGIH
                     ITYLIGFRNRL"
BASE COUNT          416 a          641 c          714 g          454 t
ORIGIN      
        1 gttttcggcg gcggcgtgcg agttctgtcg acccagatcc tcaattccaa gctgaacgac
       61 gcgatcggtc tggcgtacgt cgagacgaca gtgcttgcga taagcgcggt tgcgggacta
      121 ttgctattca gatggctgga agggaagcgg gcgtacgtcg cagccggcaa gggcggtgcg
      181 agccgccagc cggttcgctc gcggtgggcg cgcatcggtc tcgcgactgc ggctggtctc
      241 atcgtgctcg tgctggtgtt gccacacctc atgatcgtgc tcgtatcctt cgcgaaggac
      301 ggtgcgtgga cgacccaggt attgccgccg gaatacacca cgcacaatta cgcgggcctg
      361 ttcaccgaga accagctgtg gacgcccatt cgcaacagca tagtcatgtc gttgctggcg
      421 accgccggta atgtcgtgtt ctgtgtcgcc ggcgcctacc tgatcgtgac gcgcaagttc
      481 agcggccgcc ggttgctcga agcgctcgtc gcactgccat gggcgattcc cggaacggct
      541 atcgcgctcg gcctccttgc cacgttcaac aagaacgacc tgtcgatggg caaggtattg
      601 ctggtcggca cgttctggat tcttccgctg gcgtacttcg tgcgggacat tccgctcgta
      661 tcgcaggcgg tggagggatc gctcaagcag atggatccct cgctggagcc agcagcgcgc
      721 gggctcggtg catcatggtg gatggcagtg cgtcgtgtgg tattaccggc ggcgcggccc
      781 ggtatagtcg caggtgcatt gctcgcgtgt gtcaccgctg tcggagagtt cgtcgcgagc
      841 atcgtgctgt acacgcatgg caacaggccg atatcgatcg agatactcgc ccaacttcgc
      901 tcgtacgctt ttggcaccgc atctgcgtac agtgcactcc tgatcggact ggtgctcatc
      961 atggcgctcg ccgcgcgcct cgcagagtca cggatgcaat gaggatgtga tttcgtggat
     1021 caggaagaga gagaaaagct accgcgcatc gtgatcatag gcggaggttt cgggggattg
     1081 ctcgcagcga agaagctcgg ccggatcaaa gcccgcgtaa ccgtgctcga caagacgaac
     1141 catcatctct tccagccgtt attgtatcag gtggcaaccg cgtcgctggc gccaaccgac
     1201 atcgcagctg ccatcaggca cgtgctgcga tatcaggcaa acaccagcgt cgagctggcc
     1261 gaggtgcgcg aggtcgatgt gaacgcgcag atcgtgaagt gttcggatcc gtcgcgcctc
     1321 aagggtgatt tcgaagtccc gtatgattat ctcatcgttg catgcggtac caggcattcg
     1381 tatttcggcc accctgaatg ggagaaattc gcgcctggat tgaaggccgt cgaggatgcg
     1441 ctggagattc ggcgacgctt tctgctcgca ttcgaggaag cggaccgcgc tgcgacgccg
     1501 gaagaacgtg acgaatggct cacgtttgtc attgtcggtg ccgggccaac aggttgcgag
     1561 cttgcggggg tgatgcagga gatcgcgcac ggaatgcgca gggacttccg gcacgtcgat
     1621 accggcgata catccgtcat tctgctcgaa gcggggagtc gcatcctgcc ggcatttccg
     1681 gagccgctcg ccgcgcgcgc tgcacgtgat ctcgccgagc tgcgcgtgga cgtgcgaacg
     1741 tcatcggctg tgacacgaat cgaacccaac gctgtttacg ttggtgatca ccagatcagg
     1801 acacgctccg tattctgggc tgcgggaaac gtcgcatcgc cagtttcaaa gtcgcttgga
     1861 gtgccactta ccaagacggg ccaggtgatc gtggagcgcg atctctcgat tcccggtcac
     1921 cccaatgtct ttgtcatcgg tgacctcgcg catgcgctac agaagaacgg gcagcccgca
     1981 ccgggagtcg cgcaggttgc gatgcaggaa ggtcgcgtgg ctgcgaagaa tgtgattgca
     2041 accatcgaaa gaaggccgcg ctccgacttc aactatttca acaagggcga tctcgctacg
     2101 atcggccgtg gcaaggcgat cgcgaatctg ttcggcggga agatccaggt cggtggacgg
     2161 ctcgcgtggc tcctctggct gggaatccac atcacatacc tcatcggctt ccgcaacaga
     2221 ctgag
//
LOCUS       DATIMD010000654         2296 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_2309398, whole genome shotgun sequence.
ACCESSION   DATIMD010000654 DATIMD010000000
VERSION     DATIMD010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2309398"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..945
                     /locus_tag="VLI40_14565"
     CDS             <1..945
                     /locus_tag="VLI40_14565"
                     /inference="COORDINATES: protein motif:HMM:NF028171.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase C-terminal
                     domain-containing protein"
                     /protein_id="HSU98455.1"
                     /translation="RFGPRRMRGGTLDKRHYDVARSLQLVLEETVLHLASWLRQASDS
                     PKLCMAGGIALNCVMNARLRDAKIFDDVWVQPASGDAGTALGAALLVDAEERDATSHS
                     RMEHAYLGPAYDDDEIERFLQWSRLAYRRSDDVVEDAAVLLADNKVIGWFQGAMEFGP
                     RALGARSILASPIDAGMQAKLNDIKDREDFRPVAPVVTEEDAPEWFQDAHVAPYMLFT
                     FAVRPEREQSIPAVRHVDGTARVQTIRRDQNARYYDLIQAFKRRTGVPVLVNTSFNTR
                     GEPIVCTPRDAVESFWTSPLEALVIGSFIVEKPVASPA"
     gene            942..1913
                     /locus_tag="VLI40_14570"
     CDS             942..1913
                     /locus_tag="VLI40_14570"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSU98456.1"
                     /translation="MIRISVVIPTCNRVDLLERCVAAITRQTLSPDEYELVVVDDGSS
                     AATSALIRKWQAHSRIAIRYVAIENGPRGPAAARNVGWHVGRAPIIAFTDDDTIPAPD
                     WLEQAIAGFRDVSVDAAWGRIVVPLPSTPTDYERDTAGLETAGFVTANCFVRRSVLER
                     LGGFDEAFRSAWREDSDLYFRLLRGGQRVRYLPNAAVEHPVRRAPWGVSVLQQRKASY
                     DALLYRKHPELFRQYVTPARPWQYYPIVLALTGMGVGAALGRRTLTEVAGAAWLVLTL
                     RFAMQRLRATSRAPTHVAEMLATSAVIPPLSILHRTRGAIRHGVLFW"
     gene            1993..>2296
                     /locus_tag="VLI40_14575"
     CDS             1993..>2296
                     /locus_tag="VLI40_14575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98457.1"
                     /translation="MHASGARPAAARVDTRWPPLMERCVFLGTCVALLTAMACSGSTP
                     TGVACTAIYVYGISLKVQNASTGAPITDSATVRITDGSYVESYNFLGPAGQPTSGTL"
BASE COUNT          421 a          724 c          720 g          431 t
ORIGIN      
        1 cgcttcggtc cgcggcgcat gcgcggcggg acgctcgaca agcgtcacta cgacgtcgcc
       61 cgttcgcttc agctcgtact tgaagaaacg gtgcttcatc tcgccagctg gctgcgccag
      121 gcgtccgaca gcccgaagct gtgcatggct ggcggcatcg cgctcaactg cgtgatgaac
      181 gcgcggttgc gcgacgcgaa gatattcgac gacgtatggg tgcagcccgc ctccggcgac
      241 gctggtactg cgctcggcgc tgcgctcctc gtcgatgcgg aggagcgcga cgctacatcc
      301 catagccgga tggagcatgc gtacctcgga ccggcgtatg acgacgatga gatcgagcgg
      361 tttctgcagt ggtcgcgcct cgcgtatcgc cggtccgacg atgtcgtcga ggacgctgcc
      421 gtcctgctcg ccgacaacaa ggtgatcggc tggttccagg gcgcaatgga gttcggcccg
      481 cgcgcgttgg gagcccgttc cattctcgca agtccgatcg atgccggaat gcaggcgaag
      541 ctgaacgata tcaaggaccg cgaagacttc agacccgtcg ctccagtcgt gaccgaggaa
      601 gacgcacccg agtggtttca ggatgcgcac gttgctccgt acatgttgtt cacattcgcc
      661 gtgcgaccgg agcgggaaca atcgattcca gcagtacgtc atgtcgacgg cacagcacgc
      721 gtccagacga tccggcgcga tcagaacgca cgatactacg acctgatcca ggcgttcaag
      781 cgacgcaccg gcgttccggt gctggtgaat acgtcgttca acacacgtgg tgagccgatc
      841 gtctgcacgc cgcgcgacgc tgttgagagc ttctggacgt cgccgctgga agcgctcgtg
      901 atcggctcgt tcatagtcga gaagccagtt gcatctccag catgatacga atctcagtcg
      961 taatccccac gtgcaatcgt gtggatctgc tcgagcggtg cgtcgcagcg atcacacgcc
     1021 agacgctgtc acccgacgaa tatgagctcg tcgtagttga cgacgggtcg agtgcagcga
     1081 catccgcact gattcgtaaa tggcaggccc actcgcgcat cgccatccgt tacgtcgcaa
     1141 tcgagaacgg gccgcgcggg ccggcagccg cgcgcaacgt cggatggcac gttggccgcg
     1201 caccgatcat cgcattcacg gacgacgaca cgattccagc gccggactgg ctggagcaag
     1261 ccattgcagg attccgcgat gtgagcgtcg atgcagcatg gggacggatt gtcgtcccgc
     1321 tgccatccac gcccaccgat tatgagcgcg atactgcagg gctggagacc gccggattcg
     1381 tcacggcgaa ctgctttgta cggcgtagcg ttctcgaaag gctgggtggc ttcgacgagg
     1441 ctttccgcag tgcatggaga gaagacagcg atctgtactt ccgccttctg cgcggcggtc
     1501 aacgtgttcg gtatttgccc aatgccgccg tcgagcaccc tgtgcggcgc gcgccatggg
     1561 gcgtaagcgt cctgcagcaa cgcaaggcat catacgacgc tctgctgtac aggaaacatc
     1621 ccgagctctt ccggcagtat gtgacgccgg cccggccgtg gcaatactat ccaatcgtgc
     1681 tcgcgctgac cgggatgggt gtcggcgctg cgcttggtcg gcgcacactg accgaggttg
     1741 cgggcgccgc atggctggtc ctcacccttc gattcgccat gcagcgtctg cgagccacat
     1801 cgcgcgcgcc aacacacgtc gccgagatgc ttgcaacatc ggccgtcatc cctccgctat
     1861 cgatcctgca ccgtacgcgc ggcgccatcc ggcatggggt attgttctgg taagcatgag
     1921 tgaccatcca cccaccgtga cgttccggcg atatccccgg gtcgtgcagg tatgacgatt
     1981 atcgaagagc taatgcatgc cagcggagcc cggccagctg ccgcgcgcgt cgacacccga
     2041 tggccaccgt tgatggagcg gtgcgttttt ctcgggacgt gcgttgcgct actcactgcg
     2101 atggcatgct cgggctcgac gccgacaggc gtcgcgtgca ccgcgattta cgtttatggc
     2161 atctcgctca aggtgcagaa cgcgtcaact ggcgcaccga ttaccgacag tgcgacagtg
     2221 cggatcacgg atggcagcta cgtcgagtcc tacaatttcc tcggcccggc cggccagcca
     2281 acgagtggaa cgctat
//
LOCUS       DATIMD010000655         8668 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Gemmatimonadaceae bacterium isolate SMAG_U15761
            k141_288465, whole genome shotgun sequence.
ACCESSION   DATIMD010000655 DATIMD010000000
VERSION     DATIMD010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936474
            Sequence Read Archive: SRR9650391
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gemmatimonadaceae bacterium (soil metagenome)
  ORGANISM  Gemmatimonadaceae bacterium
            Bacteria; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales;
            Gemmatimonadaceae.
REFERENCE   1  (bases 1 to 8668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 07:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,895
            Genes (coding)                    :: 2,891
            CDSs (with protein)               :: 2,891
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8668
                     /organism="Gemmatimonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288465"
                     /isolate="SMAG_U15761"
                     /isolation_source="soil"
                     /db_xref="taxon:2026741"
                     /environmental_sample
                     /country="USA: California"
                     /lat_lon="37.89 N 123.48 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..646
                     /locus_tag="VLI40_14580"
     CDS             <1..646
                     /locus_tag="VLI40_14580"
                     /inference="COORDINATES: protein motif:HMM:NF025053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein
                     phosphatase"
                     /protein_id="HSU98458.1"
                     /translation="GVGGQLAGEEASRIALETVTQYVIQSTLCYYQSDATASDFVDLL
                     QKAAITSHAAVLERARDDRDLRGMATTLTLWIGVWPWIYLLQVGDSRYYLYRHGVLTQ
                     ISRDQTMAQEFIDQGVMTRSVALASPWANVLSSSLGGEQTAPVVTRLAASWENTHLIC
                     SDGLTKHVSDARIAERLRGMTSARDACEGLLQDALDGGGTDNITIIVGRAVAKE"
     gene            complement(678..1418)
                     /locus_tag="VLI40_14585"
     CDS             complement(678..1418)
                     /locus_tag="VLI40_14585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98459.1"
                     /translation="MPHESRESRRFVPGFRSYMIAGMGVFGALSIAAFSKANQKPHFQ
                     EIDVERINIVEPNGMLRMTLSDAARSPGWVIGGKLIPGRPKTAGMIFYNDEGFEDGGL
                     IFGGKKDKDGKYSAFGHLSFDQYNQDQVINLEYSEENGIRKQGLGINDQPEMPLAEMM
                     PKYQAAMKMPAGPARDSILRVISKGSAQRVFLGRARDKSAIVQLSDAHSHPRLRLTVD
                     SAGAASIEFLDDSGHVSRRISGSDTGKP"
     gene            complement(1456..4191)
                     /locus_tag="VLI40_14590"
     CDS             complement(1456..4191)
                     /locus_tag="VLI40_14590"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98460.1"
                     /translation="MELLTTERWSLRGSFIRIAATTCASVLCAAVVHAQASKHKTQTP
                     TTSRSHAVSADSVQPALSHTLAARSIGPAVMGGRVSTIALDPRTPTTFYAGLGMGNLM
                     KTTDNGITFTAIFDHEKAGSIGDVEIAPSDPRVLWLGSGEANDRNSVSYGNGVYRSTD
                     AGATWKNVGLKDSKAIARIAVHPTDPNTAYAAVVGDLWMPNAERGLYKTSDAGATWRK
                     VLSAPAPYDTRVGAGEVAVDPSNPNIVYAAMYARQRQPWGFKYGPQATDGKDLGGIFK
                     SEDAGTTWHKLGGGLPSQTGRIGLSIYAKDPKIVYAVVQSDSGGQVDLNAVYSKEGGV
                     FRTEDGGAHWTRVSKVDPRPFYFSQIRVDPTNPQRVYLLSYVLLVSDDGGQTWREDRF
                     TNVHPDAHALVVDPANPKHLLIGTDGGLFQSFNEGTAWEHLDRFAAGEVYRINVDRST
                     PFRICGGLQDNTNWVGPSDTRSGEGIRNGDWQTLQGGDGSYCAFDPTDSTVVYAESQQ
                     ASVRRVDLKTGQITMLRPQPNEGEPAFRFNWLAPMIMSQHETGTLYLGGNVIFKLTNH
                     GENWTVISPDLSTNDLTKMRATGSGAETYGTVFTIAESPVKAGVLWAGTDDGKVWRTI
                     DDGAHWTDLSAKLPAAVRGRWINRIEAGHADVNVAYVVANAHRDGIYSPIAYRTTDGG
                     ATWKSISGNLPADEPMRVVREDPENANVLYAGTEHGLWLSLDAGTSWEPLGNLPTTPV
                     ADILIEPKTHSIVIATQGRSIWIIDQARAFSQLTPAVLSDTVHLFAPESALEYELLPS
                     FDEWTGSAQFRGKNPPVAAMLTYYIRHATGESATIDITTGSGTPVAHLTGPAVSGLNR
                     VAWNLKPTSSVLASYGGAEGAIFVHPGAYTVTITYGHAKRTQPLEVRALPGIATK"
     gene            complement(4179..5825)
                     /locus_tag="VLI40_14595"
     CDS             complement(4179..5825)
                     /locus_tag="VLI40_14595"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HSU98461.1"
                     /translation="MSTNAIAQGRRFEVSISPEAHAGPLTGRLVLAISKVDKGEPRMS
                     ISPTGPEILGVDLDQLPAGQAVTVTDSAIGFPMQLSELPEGDYSIQAVVNVYEQLHRS
                     DGHTIWAHMNDGSIEFFFFAAGNLYSDVQHVHIGRDGAFRLVVNHVIPKPKGPQDTEW
                     MKHVQIQSQILTKFWGRPVFINATVLLPKGYAEHPNTYYPSVYPLGHGDNPFGFTTRP
                     AHNTEGGEINPIELRRGARVDKNSGLESGYDFYKSWTSDPFPRVIAITLAQATPYFPD
                     SYSVNSVNNGPYGDAIVQEVVPYLEKHFRIIPKPYARQLEGASTSGWQTLALQLQHPD
                     FFGGAWVLQPDPIDFRHYQQTDIYKDDNAFSIATGQFTAEERPFRRTVTGQVTGTIRE
                     LSRFEDVLGSRGRSGYQLEAWEAVFGPIDADGYPVPLWDKRTGKIDHKVADYMRDHGF
                     DLHAYAEKNWATLGPKLQGKLHFFAGDMDNFYLNLAVYDWENFLKATTNPHLNADFTY
                     GRPERGHGSHSYTWAEMVHKMAAAITAEAPRGEDIKAWNY"
     gene            complement(5888..6643)
                     /locus_tag="VLI40_14600"
     CDS             complement(5888..6643)
                     /locus_tag="VLI40_14600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSU98462.1"
                     /translation="MTTNSVSPLRRWLGFRTYVVVSTTVIGALALAAFTKANQKPHFQ
                     EIDVERVNIVEPDGKLRMTISDAARSPGWVFHGKTYPGRPKSAGMIFFNDEGEEDGGI
                     GYGGRSVNGKVEADGGIAFDQYNQDESVSIKYSESNGKRMQGLAVNDHADMPITEMLS
                     RRDAIVKIPAGPARDSAMKAFAENNGHPLWAQRVFAGRDRSRSAVVNLADPLGRPRLR
                     MVVDSTGAASIQFLDTAGHVTRTISAQNTGDSK"
     gene            6945..7277
                     /locus_tag="VLI40_14605"
     CDS             6945..7277
                     /locus_tag="VLI40_14605"
                     /inference="COORDINATES: protein motif:HMM:NF039485.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidB family protein"
                     /protein_id="HSU98463.1"
                     /translation="MGMFDGLLGGVVGAEMATVVNGLIQKHGGVQGIVSQLESQGLGN
                     TVKSWVGPGANEPITGDQLHAALGSDAMTQLAAKLGIPPEELSAKLAQVLPGAIDKLT
                     PGGTLPAA"
     gene            complement(7304..7936)
                     /locus_tag="VLI40_14610"
     CDS             complement(7304..7936)
                     /locus_tag="VLI40_14610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HSU98464.1"
                     /translation="MSTLYTPYVIERSSRGERTYDVFSRLLMDRIIFLGTPVTDDVAN
                     VIIAQLLFLEADNAERDVHLYINSPGGSVSAGLAIYDTMQFMKAPVNTICMGFAASIS
                     CFLLAGGRAGKRSALPHSRIMQHQPSQTGGGGSASDVEIQAREIVFLRRTVNTLMAKH
                     TGRPVEQIEHDFDRDNYMSAEQAKEYGIIDHVVTHKGEVVEASRELATTV"
     gene            complement(7979..8542)
                     /locus_tag="VLI40_14615"
     CDS             complement(7979..8542)
                     /locus_tag="VLI40_14615"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HSU98465.1"
                     /translation="MNDTVIFEPLEALTGETPHTESDTVPDNDRDAIETTIDIAASPE
                     RVFAALTDPQELAAWWGSDDTYRTHDWHVDARSNGEWSARTVDRSGKEGSIAGRFTVV
                     DRPSVLESTWRASWDEIGTTTVRYDLSPAIVDDTPGTRLTVTHTGFNGFTACACINAE
                     SHATVLGVLISTIARSGHARRVLVCAV"
BASE COUNT         1586 a         2577 c         2669 g         1836 t
ORIGIN      
        1 cggagtgggc gggcagctcg ctggtgagga ggccagccgg atcgcgctcg agactgtcac
       61 gcaatacgtc atacagagca cgctctgtta ctaccagtca gacgcaactg cttccgactt
      121 cgtggatttg ctccagaaag cggccataac cagtcacgcc gccgtactcg agcgagcgcg
      181 cgacgatcga gatctgcgtg gaatggcaac gacgctcaca ctgtggatcg gcgtgtggcc
      241 gtggatctat ctgcttcagg ttggcgattc gcgctactat ctgtaccggc atggtgtgct
      301 gacgcagata tcacgcgatc agacaatggc gcaggaattc attgaccagg gtgtgatgac
      361 gcgctctgtg gcgctcgcat cgccctgggc caacgtgctc tccagctcgc tcggcgggga
      421 gcagaccgcg ccggtggtca cgcgtctggc agcaagctgg gagaacacgc atctcatatg
      481 cagcgacggt ctcacgaaac acgtctccga tgcgcgcatc gccgaacgac ttcgaggaat
      541 gacgtcagcg cgcgacgcgt gcgaaggcct gttgcaggat gcgctggacg gcggaggcac
      601 ggacaacatc accatcatcg ttggacgcgc cgtcgcaaag gagtagggcg cgggtatgat
      661 ccgcgccccg tgcagcgtta cggctttccg gtgtcgctac ccgagatgcg ccgtgacacg
      721 tgtccgctat cgtccagaaa ttcgatgctc gcggcgccag ccgaatcgac agtgagccgc
      781 agcctcggat ggctgtgcgc gtcggagagc tgtacgatcg ccgatttgtc gcgcgcgcgg
      841 ccgagaaaga cgcgttgcgc gctgcccttg ctgatcactc gtagtatcga gtcgcgagct
      901 ggccccgcgg gcatcttcat cgccgcctga tacttcggca tcatttccgc gagcggcatc
      961 tcgggctgat cgtttatccc gaggccctgt ttgcgaatgc cgttctcctc cgagtactcc
     1021 aggtttatca cctgatcctg attgtactga tcgaacgaga ggtgaccgaa cgctgagtac
     1081 ttgccgtcct tgtccttctt gccgccaaag atgaggccgc catcttcgaa gccctcgtcg
     1141 ttgtagaaga tcattcccgc cgttttcgga cgacccggaa tgagcttgcc gccaatcacc
     1201 catcccggtg agcgcgctgc atcggacagc gtcatgcgaa gcataccgtt cggctcgacg
     1261 atgttgatgc gctcgacgtc gatctcctgg aaatgaggtt tctgattcgc cttgctgaac
     1321 gctgcgatgg aaagcgcacc gaacacgccc atgcctgcaa tcatatagct tctgaatcca
     1381 ggtacgaagc ggcgcgactc gcgtgattcg tgcggcattg aagttctcat gtgaatgttg
     1441 gatgatgttg cacggctact ttgtagcgat gccgggcagg gcgcggactt ccagaggctg
     1501 ggtgcgcttg gcatgtccat aagtgatcgt caccgtataa gcgcccggat ggacaaaaat
     1561 cgctccctcg gcgccgccgt acgaagcaag cacgctgctc gtaggcttga gattccacgc
     1621 gacgcggttg agaccggaca cggccgggcc agtcagatga gctacgggcg tgccgctccc
     1681 ggtggtgatg tcgatggtcg cgctctctcc ggtagcatgc cggatgtaat acgtcagcat
     1741 cgctgcgacg ggtgggttct tcccgcgaaa ctgtgcgctg ccggtccact catcgaagct
     1801 cggcaacaac tcgtactcca gcgccgactc gggggcgaac agatggacag tgtcgctcaa
     1861 caccgctggc gtcagttggg agaacgcgcg tgcctggtcg atgatccaga tactgcgccc
     1921 ctgcgttgca atgacgatgg aatgcgtctt cggctcgatc agtatgtcgg cgacgggtgt
     1981 cgttggcaga ttgccgagcg gctcccacga ggtgcctgca tcgagcgaca gccacagtcc
     2041 gtgctccgtg ccagcgtaca acacgttggc gttctccgga tcttcacgta ccactcgcat
     2101 cggctcgtcc gctggcagat tgccgcttat gctcttccag gtagctccgc catccgtggt
     2161 gcggtacgcg atcgggctgt atatcccgtc gcggtgcgca ttggcaacta cataagcgac
     2221 gttgacgtcc gcgtgtccgg cttcgatgcg gttgatccag cgcccgcgca ctgcagctgg
     2281 aagcttcgcg ctgagatccg tccagtgtgc gccatcgtcg atcgtgcgcc acaccttgcc
     2341 gtcatcagtc cccgcccata gtactcccgc cttcactggc gattcggcga tcgtgaagac
     2401 ggttccgtaa gtctccgcgc cgcttcctgt agcgcgcatc ttcgtcagat cgttggtcga
     2461 tagatccggc gagatcacgg tccagttctc accgtgattc gtcagcttga agatgacgtt
     2521 gccgccaaga tacagcgtgc cggtctcgtg ctggctcatt atcatgggag ccagccagtt
     2581 gaagcgaaac gccggctcgc cttcgtttgg ttgcgggcgc aacattgtga tctggccggt
     2641 cttgagatcg actcggcgaa ccgatgcctg ctgcgattcc gcgtacacca cggtcgaatc
     2701 agttggatcg aacgcgcagt acgaaccgtc gccgccctgc agcgtttgcc agtcgccgtt
     2761 gcgaattcct tcaccgctgc gtgtgtcgct cggaccgacc cagttggtgt tgtcctgcag
     2821 gccgccgcaa atgcggaacg gagtcgagcg atcgacgttg atcctgtaca cttcaccggc
     2881 ggcgaatctg tcgagatgct cccacgccgt tccctcgttg aacgattgaa acaggccgcc
     2941 gtcggtaccg atcagcaggt gcttcggatt ggcgggatct acaacgagcg catgggcgtc
     3001 gggatggacg ttggtgaagc gatcctcgcg ccaggtctgg ccgccgtcgt ccgacacgag
     3061 aagtacgtac gagagcagat agacgcgctg cgggttggtc gggtcgacgc ggatctggct
     3121 gaagtagaac ggacggggat ccacctttga cacgcgggtc cagtgcgccc cgccatcttc
     3181 agtgcggaat acgccgcctt ccttgctgta caccgcgttg agatccacct gtccaccgga
     3241 atcgctctgc actaccgcgt aaacgatctt cggatctttt gcgtagatgg acaatccgat
     3301 gcggccggtc tgcgacggca gtccgccgcc gagcttgtgc cacgttgtgc cagcgtcttc
     3361 actcttgaag atgccgccga gatcctttcc gtccgttgct tgcgggccgt acttgaatcc
     3421 ccacggttgg cgctggcgcg cgtacatggc cgcgtacacg atgttcggat tggacggatc
     3481 tactgctact tctcccgctc caacacgcgt gtcgtacggc gctggcgcgg agagcacctt
     3541 gcgccacgta gcacctgcgt cggatgtctt gtacagtccg cgttcggcgt tcggcatcca
     3601 cagatctccg acgaccgcgg cgtatgccgt gttcggatct gtcggatgca ccgcgatgcg
     3661 tgcgatcgcc ttgctatcct tgagtccgac attcttccac gtcgcgccgg cgtcggtgga
     3721 gcgatagacg ccgttgccgt acgatacgga attgcgatcg ttcgcctcac cgcttccgag
     3781 ccataacacg cgcggatccg acggcgcgat ctcgacgtcg ccaatggatc ctgccttctc
     3841 gtgatcgaag atcgcggtaa aggttatccc gttgtccgtc gtcttcatga gattgcccat
     3901 gccgagtccg gcatagaacg tcgtcggtgt ccttggatcc agcgcgatgg tcgacacgcg
     3961 gccacccatg acagccggac cgatgctgcg cgccgcgaga gtgtgcgaca gcgctggctg
     4021 cacgctgtca gcggatacag catgcgaccg ggatgtcgtg ggtgtctgtg tcttgtgctt
     4081 gctcgcctgt gcatggacga cggctgcgca caacactgaa gcgcaggttg ttgcagcgat
     4141 cctgatgaac gaaccgcgca acgaccagcg ctcggtggtc agtaattcca tgccttgata
     4201 tcctcgccgc gtggcgcttc agccgtgatt gccgcagcca tcttgtgaac catttccgcc
     4261 caggtgtagg aatgcgagcc gtgtcctctt tccggacggc cgtaggtaaa gtccgcgttc
     4321 aagtgcggat tggtggtcgc cttcaggaaa ttctcccagt cgtacactgc aagattgaga
     4381 tagaagttgt ccatatcgcc ggcaaaaaag tgcagcttgc cctgaagctt gggacccagc
     4441 gtggcccagt tcttctcggc gtatgcgtgc aggtcaaagc catgatcgcg catgtagtcg
     4501 gcaaccttat ggtcgatctt gcccgtgcgc ttgtcccaga gcgggaccgg gtatccatca
     4561 gcgtcgatcg gaccgaacac cgcttcccac gcttcgagct ggtaaccgga gcggccgcga
     4621 cttcccaaca catcctcgaa gcgactcaac tcgcgtatcg tacccgtgac ctgtcccgta
     4681 acagtgcggc ggaatggacg ctcctcggcg gtgaactgtc ccgtcgcgat cgagaatgcg
     4741 ttgtcatcct tgtagatgtc ggtctgctgg taatgacgga aatcgatcgg atccggttgc
     4801 agcacccatg cgccgccgaa gaaatccgga tgctgcagtt gcagcgcgag cgtctgccat
     4861 ccactggtag aagcgccttc gagttgccgg gcatacggct tgggaatgat gcggaaatgc
     4921 ttctcgaggt atggcaccac ctcctgcacg atcgcgtcac cgtacggtcc gttgttgacg
     4981 gagttgaccg agtacgaatc cgggaaatat ggcgtcgcct gcgcgagcgt gatcgctatc
     5041 acacgcggga atggatccga cgtccacgac ttgtagaagt cgtagccgct ttccagtcct
     5101 gaattcttgt cgaccctcgc tcctctgcgc agctcgatcg ggttgatctc accgccttcc
     5161 gtgttgtgcg ccggccgcgt ggtgaatccg aatggattgt caccatgtcc cagcggatac
     5221 acgctcgggt aataagtatt cggatgctcg gcgtagccct tgggcagcag caccgttgca
     5281 ttgatgaaga ccggtcgacc ccagaatttc gtgagtatct gactctggat ctggacgtgc
     5341 ttcatccatt cggtgtcttg aggccccttt ggcttcggta tgacatgatt gactaccagg
     5401 cggaacgcgc cgtcgcgtcc aatgtgaacg tgctgtacgt cgctgtacag attgccggcg
     5461 gcgaagaaga agaactcgat gctgccatcg ttcatgtgtg cccagatcgt gtgaccgtcg
     5521 gagcggtgca gttgctcata aacattgacg acggcctgga tcgaatagtc gccttccgga
     5581 agctccgata gctgcatcgg aaatccgatc gcactatcgg tgactgtaac agcctgtcct
     5641 gctggaagct gatcgagatc cacgccgagt atttccggtc cagtgggcga gatcgacatg
     5701 cgtggctctc ccttgtcgac cttggagatc gccagcacga gtcgtccggt gagcggtccg
     5761 gcatgtgctt cgggagagat actgacttcg aagcggcgcc cctgtgcgat ggcgttggtg
     5821 ctcacgcaaa tcgtggcgag gcacgcgaca gttgccaggc ggcgcgaaat caaggcgtgc
     5881 gtactcatca cttggagtct cccgtattct gcgcagagat tgtgcgcgtt acatgaccgg
     5941 cggtatccag gaactggatg ctcgcggcgc cggtcgaatc gacgaccatt cgcaggcgtg
     6001 gccgacccag cggatcggca agatttacga ccgcgcttcg acttctgtcg cgccccgcga
     6061 aaactcgctg agcccagagc gggtgcccgt tattctcggc gaacgccttc atcgcggaat
     6121 cgcgcgctgg tcctgcggga attttgacaa ttgcgtcgcg ccgggagagc atctcggtga
     6181 taggcatgtc ggcgtgatcg ttcaccgcca gaccctgcat gcgttttccg ttgctctccg
     6241 aatacttgat gctgaccgac tcatcctggt tgtactgatc gaatgcgatc cctccatcgg
     6301 cttcgacctt gccgttgacc gaacgaccac cgtagccgat tccgccatcc tcttctccct
     6361 cgtcattgaa gaagatcatc cccgcgcttt tcggccggcc gggatatgtc ttgccatgaa
     6421 atacccatcc aggagaacgt gctgcgtcgg agatcgtcat gcggagcttt ccgtcgggct
     6481 cgacgatgtt gacgcgctcg acgtcgatct cctggaaatg aggcttctgg ttcgcttttg
     6541 tgaaagcggc cagcgcgagt gcgcctatga cggtcgtgga cactacgacg taggtcctga
     6601 acccgagcca gcggcggagt ggagagacag agttggttgt cattgttcga tgtgagtccg
     6661 aggggagagg cctgacgcgt ggcggggtag gaatgccggc gccaggacgc ggaccgcgca
     6721 gggatgagcg agccgagtcc attacgtagg acactccagc gcagaggcgt cccctacggg
     6781 tattgccacc gagtgtagtg cggcgacgct ctcggcaggc gcaaatttgc gcacgtccgc
     6841 agacgcggct gattcgcctg gagggggctt tcaacccata ttacacgacg gcgtccgaac
     6901 tctggccgcc agactgccgg gtcataccag aattgggaga aatcatggga atgttcgacg
     6961 gattactggg aggcgtcgtc ggcgccgaga tggcaaccgt tgtgaacggt ctgatccaga
     7021 agcacggcgg cgtgcagggg atagtcagcc agctggaatc gcagggactg ggcaataccg
     7081 taaagtcatg ggtaggccca ggcgcgaacg agccgataac cggcgatcag ctgcacgcgg
     7141 cactcggctc cgatgccatg acgcaactcg ccgccaagct cggcatcccg ccggaagagc
     7201 tctccgcgaa gctcgcacag gtgttgcccg gtgcgatcga caagctgacg ccgggcggga
     7261 cgctgcctgc ggcgtaacgg tgtgtagcaa gtcggcagac ttgctacact gtagttgcca
     7321 gctccctgct cgcttcgacc acctcgccct tgtgcgtcac gacgtggtcg atgatgccgt
     7381 attcctttgc ctgctcggcg gacatgtagt tgtcgcgatc gaaatcatgc tcgatctgct
     7441 ccacagggcg gccggtatgc ttcgccatca acgtgtttac cgtgcggcgc aggaacacga
     7501 tctcgcgcgc ctggatctcg acatccgacg cactgccgcc gccgccggtt tgtgacggct
     7561 ggtgctgcat gatgcgcgag tgcggcagcg cggatcgctt gccggcgcgc ccgccagcga
     7621 gtagaaagca gctgatgctc gcggcaaatc ccatgcagat cgtgttcacg ggtgccttca
     7681 tgaactgcat cgtgtcgtag atcgcgagtc cggccgatac cgatccaccg ggcgagttga
     7741 tgtaaagatg tacgtcacgc tcggcgttgt cggcttcaag aaatagcagc tgcgcgatga
     7801 tgacgttcgc gacgtcatcg gtaaccggtg tccccaggaa gatgatgcgg tccatgagga
     7861 gccgcgagaa aacgtcgtat gtgcgttctc cgcgagacga gcgctcgatg acgtacggtg
     7921 tatagagagt cgacatcgtt gtatcggtta tgtgttgatc ggtcgtgcgt gacggatgct
     7981 atactgcgca cacgagcacg cgacgcgcat gccctgaacg cgcgatcgta cttatgagaa
     8041 cgccgagcac ggtcgcgtgt gattcggcgt tgatgcaggc acatgcagtg aagccgttga
     8101 agccagtgtg agttacggtg agacgagtgc ccggagtgtc gtctactatc gctggcgaga
     8161 gatcgtatct gacagttgtg gtgccgatct cgtcccagct cgcgcgccat gttgattcca
     8221 gcacgctcgg gcgatcgacg actgtgaacc tgccagctat cgagccttcc tttccggatc
     8281 gatcgacggt gcgagcgctc cattcaccat tcgaccgcgc atcgacgtgc cagtcgtgcg
     8341 tgcgatacgt atcgtccgag ccccaccacg ctgcgagctc ctgcggatcc gtgagggcgg
     8401 cgaagacgcg ctcgggagat gcggcgatgt cgatcgtcgt ctcgatggca tcgcgatcgt
     8461 tatcgggaac ggtgtcgctc tccgtgtgcg gagtctcacc ggtcagagcc tccaagggct
     8521 cgaaaatgac tgtgtcgttc atgactgatg cttctcgggt gggcggtcga aggtccaatc
     8581 cgtggtaccc tcgagatgcc gtttgagatt cgcgagattg gccggccaga acttctgata
     8641 gccggcaatc cacttcgcaa catcggtg
//
